Query 043105
Match_columns 426
No_of_seqs 151 out of 1358
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 12:55:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043105.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043105hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304 Amino acid transporter 100.0 4.1E-56 8.9E-61 416.2 35.7 384 34-421 43-449 (449)
2 PTZ00206 amino acid transporte 100.0 8.8E-55 1.9E-59 427.4 31.1 379 36-422 58-465 (467)
3 KOG1303 Amino acid transporter 100.0 8.9E-52 1.9E-56 394.3 32.3 389 33-424 33-437 (437)
4 PLN03074 auxin influx permease 100.0 1.7E-47 3.6E-52 373.9 31.1 386 35-426 43-456 (473)
5 PF01490 Aa_trans: Transmembra 100.0 4.7E-51 1E-55 399.7 0.1 379 36-418 1-408 (409)
6 KOG1305 Amino acid transporter 100.0 1.2E-42 2.6E-47 330.2 22.8 380 35-425 3-409 (411)
7 KOG4303 Vesicular inhibitory a 100.0 2.2E-44 4.9E-49 317.6 10.0 388 32-424 111-517 (524)
8 COG0814 SdaC Amino acid permea 100.0 6.1E-33 1.3E-37 267.7 31.1 380 33-418 4-412 (415)
9 PRK10483 tryptophan permease; 100.0 1.1E-27 2.5E-32 227.1 30.8 371 34-415 7-404 (414)
10 PF03222 Trp_Tyr_perm: Tryptop 100.0 2.2E-27 4.8E-32 227.7 31.4 366 36-411 1-392 (394)
11 PRK09664 tryptophan permease T 100.0 7.8E-27 1.7E-31 221.2 30.3 370 36-415 7-405 (415)
12 PRK15132 tyrosine transporter 100.0 8E-27 1.7E-31 222.5 29.8 366 38-415 3-393 (403)
13 TIGR00837 araaP aromatic amino 100.0 5.2E-27 1.1E-31 227.1 25.1 336 44-389 3-359 (381)
14 PRK13629 threonine/serine tran 99.9 7.4E-23 1.6E-27 194.1 29.9 364 43-415 24-440 (443)
15 TIGR00814 stp serine transport 99.9 7.3E-23 1.6E-27 196.0 26.6 358 41-407 6-396 (397)
16 TIGR00912 2A0309 spore germina 99.9 4.6E-19 9.9E-24 170.3 26.6 336 36-388 1-353 (359)
17 PRK10655 potE putrescine trans 99.8 8.4E-17 1.8E-21 158.7 34.5 240 34-284 4-248 (438)
18 PRK10435 cadB lysine/cadaverin 99.8 1.2E-16 2.5E-21 157.3 33.3 241 33-285 2-247 (435)
19 KOG1287 Amino acid transporter 99.8 3.7E-18 8.1E-23 162.3 21.6 355 33-396 9-393 (479)
20 PRK11021 putative transporter; 99.8 5.3E-16 1.1E-20 151.7 35.7 337 38-390 1-363 (410)
21 TIGR00909 2A0306 amino acid tr 99.8 7.5E-17 1.6E-21 158.8 29.6 343 35-388 2-375 (429)
22 TIGR03810 arg_ornith_anti argi 99.8 2.2E-16 4.7E-21 156.9 33.0 345 36-389 1-380 (468)
23 PRK10249 phenylalanine transpo 99.8 2E-16 4.3E-21 156.5 31.2 339 33-388 18-394 (458)
24 PRK15049 L-asparagine permease 99.8 5.1E-16 1.1E-20 154.8 33.8 340 34-388 26-405 (499)
25 TIGR00905 2A0302 transporter, 99.8 5.1E-16 1.1E-20 154.4 33.1 347 35-390 6-385 (473)
26 PRK10644 arginine:agmatin anti 99.8 1.5E-15 3.3E-20 150.0 34.6 243 33-286 5-252 (445)
27 PRK11387 S-methylmethionine tr 99.8 8.4E-16 1.8E-20 152.8 32.6 284 33-330 11-318 (471)
28 TIGR00906 2A0303 cationic amin 99.8 9.3E-16 2E-20 154.5 31.8 345 33-388 25-410 (557)
29 TIGR01773 GABAperm gamma-amino 99.8 1.6E-15 3.6E-20 150.1 31.8 284 33-331 9-315 (452)
30 PRK10238 aromatic amino acid t 99.8 2.8E-15 6.1E-20 148.3 32.8 340 33-389 9-386 (456)
31 PRK10746 putative transport pr 99.7 6.9E-15 1.5E-19 145.5 33.5 341 34-389 8-388 (461)
32 PRK11049 D-alanine/D-serine/gl 99.7 7E-15 1.5E-19 146.0 33.3 340 33-389 17-399 (469)
33 PF03845 Spore_permease: Spore 99.7 1.5E-15 3.3E-20 143.3 24.7 287 37-338 1-298 (320)
34 COG1113 AnsP Gamma-aminobutyra 99.7 2E-15 4.4E-20 141.5 24.7 339 33-388 10-388 (462)
35 TIGR00911 2A0308 L-type amino 99.7 9E-15 1.9E-19 146.7 31.2 245 32-285 38-295 (501)
36 TIGR00908 2A0305 ethanolamine 99.7 1.2E-14 2.7E-19 143.5 31.0 233 33-279 4-245 (442)
37 TIGR00913 2A0310 amino acid pe 99.7 3.1E-14 6.7E-19 142.1 33.3 339 35-388 1-391 (478)
38 PRK10580 proY putative proline 99.7 2.6E-14 5.6E-19 141.7 32.4 234 33-281 6-255 (457)
39 PRK10836 lysine transporter; P 99.7 4.7E-14 1E-18 140.9 34.0 239 33-285 12-265 (489)
40 PRK11357 frlA putative fructos 99.7 1.8E-14 4E-19 142.4 30.6 238 34-283 6-253 (445)
41 TIGR00930 2a30 K-Cl cotranspor 99.7 1.8E-14 4E-19 151.7 31.1 243 33-283 73-338 (953)
42 PF13520 AA_permease_2: Amino 99.7 4.1E-14 8.9E-19 139.4 30.8 340 38-390 1-376 (426)
43 PRK10197 gamma-aminobutyrate t 99.7 1.3E-13 2.8E-18 136.1 29.4 325 47-388 3-367 (446)
44 COG0531 PotE Amino acid transp 99.6 5.9E-12 1.3E-16 125.5 32.5 347 33-389 9-389 (466)
45 TIGR03428 ureacarb_perm permea 99.5 1.4E-10 3.1E-15 115.6 35.7 245 34-286 11-274 (475)
46 KOG1286 Amino acid transporter 99.5 8.5E-13 1.8E-17 130.8 18.6 347 33-388 27-422 (554)
47 TIGR00907 2A0304 amino acid pe 99.5 2.4E-10 5.3E-15 114.2 33.2 244 34-285 10-277 (482)
48 COG0833 LysP Amino acid transp 99.5 1.5E-10 3.3E-15 111.3 29.7 342 33-388 41-427 (541)
49 TIGR03813 put_Glu_GABA_T putat 99.4 1.6E-09 3.4E-14 108.1 32.1 239 37-287 2-256 (474)
50 TIGR00910 2A0307_GadC glutamat 99.4 7.7E-10 1.7E-14 110.8 29.3 234 34-279 2-248 (507)
51 PRK15238 inner membrane transp 99.4 2.3E-09 5E-14 107.5 32.5 240 34-282 5-268 (496)
52 PF00324 AA_permease: Amino ac 99.2 7.4E-11 1.6E-15 117.9 13.6 269 46-324 5-311 (478)
53 COG3949 Uncharacterized membra 99.0 8.4E-07 1.8E-11 80.4 25.8 215 41-274 6-227 (349)
54 KOG1289 Amino acid transporter 99.0 1.8E-07 3.9E-12 90.3 22.4 367 34-411 46-473 (550)
55 PRK11375 allantoin permease; P 98.9 6.8E-06 1.5E-10 81.7 31.4 328 32-374 21-388 (484)
56 KOG3832 Predicted amino acid t 98.9 6.2E-08 1.3E-12 81.0 12.7 218 38-256 12-303 (319)
57 TIGR00800 ncs1 NCS1 nucleoside 98.8 1.5E-05 3.3E-10 78.7 30.3 291 35-334 11-329 (442)
58 TIGR02358 thia_cytX probable h 98.8 2.6E-05 5.7E-10 75.4 29.7 251 66-333 26-277 (386)
59 TIGR00813 sss transporter, SSS 98.5 0.00039 8.4E-09 68.1 31.0 147 35-197 2-150 (407)
60 COG1457 CodB Purine-cytosine p 98.5 0.00014 3E-09 70.2 26.2 252 108-370 82-343 (442)
61 PRK12488 acetate permease; Pro 98.5 0.0014 3E-08 66.6 35.1 149 34-199 65-216 (549)
62 PRK11017 codB cytosine permeas 98.5 0.00034 7.3E-09 68.2 29.2 284 65-371 38-325 (404)
63 TIGR02119 panF sodium/pantothe 98.5 0.001 2.3E-08 66.4 33.4 149 34-198 38-192 (471)
64 PF00474 SSF: Sodium:solute sy 98.5 7.8E-05 1.7E-09 73.0 24.3 146 35-196 5-153 (406)
65 PRK09442 panF sodium/panthothe 98.4 0.0023 5E-08 64.1 33.4 151 34-196 39-191 (483)
66 TIGR00796 livcs branched-chain 98.4 0.00023 4.9E-09 68.1 24.8 315 46-387 3-348 (378)
67 TIGR02711 symport_actP cation/ 98.3 0.0056 1.2E-07 62.2 35.8 147 34-197 65-214 (549)
68 PF02133 Transp_cyt_pur: Perme 98.3 3E-05 6.5E-10 76.8 17.0 241 34-283 5-259 (440)
69 TIGR00835 agcS amino acid carr 98.2 0.0023 5E-08 61.9 27.4 151 36-200 45-202 (425)
70 PRK09395 actP acetate permease 98.2 0.011 2.4E-07 60.1 34.3 146 34-195 67-214 (551)
71 TIGR02121 Na_Pro_sym sodium/pr 98.1 0.013 2.8E-07 58.8 34.1 153 34-197 34-190 (487)
72 COG1914 MntH Mn2+ and Fe2+ tra 98.1 0.0093 2E-07 57.6 28.2 366 36-418 15-412 (416)
73 COG0591 PutP Na+/proline sympo 98.0 0.019 4.1E-07 57.6 32.8 146 34-191 36-183 (493)
74 COG1953 FUI1 Cytosine/uracil/t 98.0 0.019 4.1E-07 55.9 29.7 275 20-303 23-324 (497)
75 KOG1288 Amino acid transporter 98.0 0.0014 3E-08 65.2 20.3 217 58-281 89-350 (945)
76 PRK15419 proline:sodium sympor 98.0 0.026 5.6E-07 56.8 34.7 152 34-197 38-194 (502)
77 PRK00701 manganese transport p 98.0 0.024 5.2E-07 55.8 28.8 48 106-153 93-140 (439)
78 PF01235 Na_Ala_symp: Sodium:a 97.9 0.012 2.6E-07 56.7 25.7 157 33-199 14-174 (416)
79 TIGR03648 Na_symport_lg probab 97.9 0.045 9.8E-07 55.8 34.7 148 33-196 29-178 (552)
80 COG0733 Na+-dependent transpor 97.8 0.035 7.6E-07 53.4 29.3 231 36-274 7-263 (439)
81 KOG2083 Na+/K+ symporter [Inor 97.4 0.0014 3E-08 64.3 11.3 228 35-276 27-274 (643)
82 PF01566 Nramp: Natural resist 97.4 0.11 2.3E-06 49.9 23.6 222 106-334 41-287 (358)
83 KOG2082 K+/Cl- cotransporter K 97.3 0.13 2.8E-06 52.3 23.6 114 34-153 111-226 (1075)
84 PRK10484 putative transporter; 97.3 0.23 5E-06 50.3 33.0 155 34-198 36-196 (523)
85 PF05525 Branch_AA_trans: Bran 97.3 0.16 3.4E-06 49.4 23.7 324 39-387 4-354 (427)
86 PF02554 CstA: Carbon starvati 97.0 0.033 7.1E-07 52.3 14.8 105 37-149 51-156 (376)
87 COG1115 AlsT Na+/alanine sympo 96.3 1.2 2.7E-05 43.1 27.8 157 33-199 58-218 (452)
88 PHA02764 hypothetical protein; 96.2 1 2.2E-05 41.4 21.9 95 33-136 9-106 (399)
89 COG4147 DhlC Predicted symport 96.2 1.4 3E-05 42.9 28.3 172 105-283 102-294 (529)
90 PRK15433 branched-chain amino 96.1 1.5 3.4E-05 42.7 20.6 318 39-387 9-357 (439)
91 PF00209 SNF: Sodium:neurotran 96.0 2.2 4.7E-05 43.4 27.0 101 175-275 191-299 (523)
92 COG1966 CstA Carbon starvation 95.5 0.62 1.3E-05 46.0 14.9 102 38-147 52-154 (575)
93 PRK15015 carbon starvation pro 95.1 0.41 8.9E-06 48.4 12.6 100 41-148 86-186 (701)
94 TIGR00796 livcs branched-chain 92.4 2.5 5.5E-05 40.7 12.3 51 104-154 252-302 (378)
95 PF05525 Branch_AA_trans: Bran 90.7 9.9 0.00021 37.2 14.5 82 103-191 257-338 (427)
96 TIGR01197 nramp NRAMP (natural 85.8 36 0.00078 33.1 26.8 82 105-193 62-145 (390)
97 COG1114 BrnQ Branched-chain am 84.7 40 0.00087 32.7 22.2 122 259-387 227-356 (431)
98 COG4145 PanF Na+/panthothenate 83.9 41 0.00088 32.1 29.2 243 36-290 39-302 (473)
99 COG1114 BrnQ Branched-chain am 83.8 24 0.00051 34.2 12.1 81 104-191 260-340 (431)
100 KOG2349 Na+:iodide/myo-inosito 82.7 8.1 0.00018 39.2 9.1 236 34-285 43-302 (585)
101 PF02028 BCCT: BCCT family tra 77.6 82 0.0018 31.6 27.8 115 34-153 71-207 (485)
102 KOG2466 Uridine permease/thiam 75.9 87 0.0019 31.1 14.6 247 30-288 48-321 (572)
103 PRK15433 branched-chain amino 73.8 48 0.001 32.6 11.2 76 104-187 262-337 (439)
104 PLN00151 potassium transporter 72.8 1.4E+02 0.003 31.9 15.0 134 229-366 347-499 (852)
105 PRK09928 choline transport pro 69.5 1.5E+02 0.0033 31.0 25.5 99 35-138 90-209 (679)
106 TIGR00945 tatC Twin arginine t 65.2 89 0.0019 27.5 10.3 40 297-336 53-92 (215)
107 PLN02680 carbon-monoxide oxyge 63.2 1.1E+02 0.0024 27.2 11.9 94 224-324 48-143 (232)
108 PRK09950 putative transporter; 57.7 2.2E+02 0.0047 28.8 30.0 112 35-151 81-215 (506)
109 PRK13183 psbN photosystem II r 57.5 13 0.00028 23.4 2.5 32 258-289 4-35 (46)
110 PLN00150 potassium ion transpo 54.7 2.9E+02 0.0064 29.4 17.0 134 229-366 287-439 (779)
111 CHL00020 psbN photosystem II p 54.0 12 0.00026 23.2 1.9 30 260-289 3-32 (43)
112 PF02468 PsbN: Photosystem II 53.8 15 0.00033 22.9 2.4 29 261-289 4-32 (43)
113 CHL00182 tatC Sec-independent 52.0 1.5E+02 0.0032 26.8 9.5 40 297-336 74-113 (249)
114 PRK09598 lipid A phosphoethano 51.9 67 0.0014 32.6 8.0 27 371-397 126-152 (522)
115 PLN02351 cytochromes b561 fami 49.6 1.9E+02 0.0042 25.8 10.7 73 249-325 73-147 (242)
116 PF05915 DUF872: Eukaryotic pr 46.1 96 0.0021 24.2 6.4 22 39-60 40-61 (115)
117 PF05805 L6_membrane: L6 membr 46.0 61 0.0013 27.9 5.7 61 363-423 47-117 (195)
118 COG3949 Uncharacterized membra 45.0 1.5E+02 0.0033 27.9 8.4 106 262-370 38-146 (349)
119 KOG4812 Golgi-associated prote 42.7 25 0.00055 31.0 2.9 25 395-419 222-246 (262)
120 PRK10921 twin-arginine protein 42.3 1.9E+02 0.0041 26.3 8.7 39 298-336 65-103 (258)
121 KOG1619 Cytochrome b [Energy p 41.3 2.6E+02 0.0057 24.9 9.3 76 247-325 75-153 (245)
122 KOG0569 Permease of the major 41.2 3.9E+02 0.0084 26.9 14.4 53 32-85 147-200 (485)
123 PF00902 TatC: Sec-independent 40.6 2.5E+02 0.0055 24.6 9.3 40 297-336 57-96 (215)
124 KOG1291 Mn2+ and Fe2+ transpor 39.8 3.9E+02 0.0085 26.6 21.2 48 106-153 88-135 (503)
125 COG1292 BetT Choline-glycine b 39.0 4.3E+02 0.0093 26.8 16.3 163 35-199 85-271 (537)
126 PF04835 Pox_A9: A9 protein co 38.1 77 0.0017 20.7 3.8 29 261-289 24-52 (54)
127 TIGR01912 TatC-Arch Twin argin 35.6 2.2E+02 0.0048 25.5 8.0 40 297-336 61-100 (237)
128 PF08019 DUF1705: Domain of un 35.5 2.2E+02 0.0049 23.4 7.6 23 373-395 73-95 (156)
129 KOG1289 Amino acid transporter 34.8 5.1E+02 0.011 26.4 14.5 48 106-153 324-371 (550)
130 PF02705 K_trans: K+ potassium 31.8 5.7E+02 0.012 26.1 18.9 133 227-363 202-353 (534)
131 PRK10745 trkD potassium transp 31.5 6.2E+02 0.013 26.3 16.0 26 69-94 49-74 (622)
132 COG0534 NorM Na+-driven multid 30.1 5.6E+02 0.012 25.4 10.7 129 252-386 86-217 (455)
133 PF03845 Spore_permease: Spore 28.7 4.8E+02 0.01 24.2 12.4 13 269-281 223-235 (320)
134 PRK11598 putative metal depend 28.4 3.1E+02 0.0067 28.1 8.5 13 376-388 131-143 (545)
135 TIGR00906 2A0303 cationic amin 27.6 6.8E+02 0.015 25.6 17.3 44 108-151 300-343 (557)
136 PF11990 DUF3487: Protein of u 27.4 3.1E+02 0.0068 21.6 7.5 48 36-84 19-67 (121)
137 KOG1277 Endosomal membrane pro 26.3 6.6E+02 0.014 25.0 10.9 13 46-58 293-305 (593)
138 KOG3659 Sodium-neurotransmitte 26.1 7.4E+02 0.016 25.6 19.5 57 38-94 82-143 (629)
139 TIGR00909 2A0306 amino acid tr 24.0 6.7E+02 0.015 24.3 19.0 45 108-152 265-309 (429)
140 PRK11403 hypothetical protein; 23.8 2.8E+02 0.006 21.4 5.4 69 348-418 17-86 (113)
141 PLN00148 potassium transporter 23.8 9.3E+02 0.02 25.9 18.5 133 229-365 270-421 (785)
142 PRK01766 multidrug efflux prot 23.7 5.3E+02 0.011 25.3 9.3 25 363-387 415-439 (456)
143 PRK04949 putative sulfate tran 23.0 5.7E+02 0.012 23.1 13.0 36 250-286 19-54 (251)
144 KOG2466 Uridine permease/thiam 22.6 5.8E+02 0.013 25.7 8.6 157 118-278 340-514 (572)
145 PLN00149 potassium transporter 22.5 9.9E+02 0.021 25.7 19.2 135 228-366 270-426 (779)
146 PF14256 YwiC: YwiC-like prote 22.3 4.1E+02 0.0088 21.2 7.4 50 345-396 10-60 (129)
147 COG4956 Integral membrane prot 22.0 6.6E+02 0.014 23.5 10.0 55 42-98 7-71 (356)
148 COG3752 Steroid 5-alpha reduct 22.0 6E+02 0.013 23.0 10.6 53 72-129 67-119 (272)
149 cd08766 Cyt_b561_ACYB-1_like P 21.8 3.1E+02 0.0068 22.4 5.9 70 252-324 33-104 (144)
150 COG0534 NorM Na+-driven multid 21.4 6.2E+02 0.014 25.1 9.2 29 253-281 311-339 (455)
151 PF07954 DUF1689: Protein of u 21.2 1.7E+02 0.0037 24.2 4.2 57 366-423 35-93 (152)
152 KOG3660 Sodium-neurotransmitte 20.9 9.8E+02 0.021 25.1 19.9 55 37-91 37-96 (629)
153 PF13706 PepSY_TM_3: PepSY-ass 20.6 2E+02 0.0044 17.1 3.8 30 393-422 6-35 (37)
154 PRK11560 phosphoethanolamine t 20.3 8.6E+02 0.019 25.0 9.9 20 370-389 125-144 (558)
No 1
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-56 Score=416.19 Aligned_cols=384 Identities=35% Similarity=0.524 Sum_probs=346.4
Q ss_pred CCCCCChHHHHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhH
Q 043105 34 PAPLSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLG 113 (426)
Q Consensus 34 ~~~~~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~ 113 (426)
.++..|..++..|+.+.++|+|+|++|++|+++|++.|.+..++.+.++.|+++.+++|.++..++ +.....+|.+.+
T Consensus 43 ~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~--~~~~~~~y~~~~ 120 (449)
T KOG1304|consen 43 REHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKR--FRGPSLDYAETA 120 (449)
T ss_pred CCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCccccHHHHH
Confidence 456799999999999999999999999999999999999999999999999999999999998765 222336777766
Q ss_pred H----------HHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhh
Q 043105 114 F----------VVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATL 183 (426)
Q Consensus 114 ~----------~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 183 (426)
+ +.+|++++.+++.++.+.++|.|..|+++.+++++++.+...+...+ .+.++++.++.++++++.|++
T Consensus 121 ~~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s-~~~~i~~~~~~~lll~~Ir~L 199 (449)
T KOG1304|consen 121 ESAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLS-VRLYILIQLPPLLLLNLIRNL 199 (449)
T ss_pred HHHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCcc-HHHHHHHHHHHHHHHHHHHhh
Confidence 5 56789999999999999999999999999999999999954333333 455566888888999999999
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhhhhhhhccCCccccccCChhhHHHHHHHHHhhhccceeeccchhhccccccch---h
Q 043105 184 THLAPLSIFADVVDLAATAVVMVDEVVISLKQMPEVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKEKFG---G 260 (426)
Q Consensus 184 ~~l~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~---~ 260 (426)
|.++.+|.++.++++..+++++++...... +..+.+.+.++.+++..+|+.+|||.|+.++.|++++||+|++++ +
T Consensus 200 k~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~-~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g~~g 278 (449)
T KOG1304|consen 200 KILSPFSLFANVFILVGLAIIMYYLVQDLP-PTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPGPFG 278 (449)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhccC-CccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhcCCccc
Confidence 999999999999999999999988877654 566777777899999999999999999999999999999999999 9
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhhcCCccccchhcccCCchHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcCC----c
Q 043105 261 ILGLSVTFIALMYVGFGVLGYFAFGSETKDIITANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGG----E 336 (426)
Q Consensus 261 ~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~----~ 336 (426)
++..++.+++++|..+|++||++||+++++.++.|+|++++...+++++.+.++.+||++++|+.+.+++.+++| +
T Consensus 279 VLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~~ 358 (449)
T KOG1304|consen 279 VLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQEILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSENR 358 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCccHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcch
Confidence 999999999999999999999999999999999999999999999999999999999999999999999976432 2
Q ss_pred ---chhHHHHHHHHHHHHHHhhcCCccchhhhhchhhhhhhHhHHHHHHHHHHhccc---cchHHHHHHHHHHHHHHHHH
Q 043105 337 ---YCLWLRWLLVFLVSLVAMSVPNFADFLSLVGSSVCCGLGFVLPALFHLLVFKEE---MGWKGWFLDVGIVVVGVVFG 410 (426)
Q Consensus 337 ---~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~~~---~~~~~~~~~~~~~~~g~~~~ 410 (426)
..++.|..+++++..+|..+|+++.+++++|+++++.+.+++|++++++..+++ ..+|+.+.+.+++++|++.+
T Consensus 359 ~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~ 438 (449)
T KOG1304|consen 359 KKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGF 438 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHH
Confidence 123499999999999999999999999999999999999999999999998743 34688999999999999999
Q ss_pred HHhHHHHHHHH
Q 043105 411 VSGTWYALMEI 421 (426)
Q Consensus 411 v~~~~~~i~~i 421 (426)
+.|||+++.++
T Consensus 439 v~Gty~si~~i 449 (449)
T KOG1304|consen 439 VYGTYTSIKEI 449 (449)
T ss_pred HHHHhhhhhcC
Confidence 99999999874
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=8.8e-55 Score=427.42 Aligned_cols=379 Identities=20% Similarity=0.277 Sum_probs=315.7
Q ss_pred CCCChHHHHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhHHH
Q 043105 36 PLSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGFV 115 (426)
Q Consensus 36 ~~~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~ 115 (426)
+..+..++++|+.|+++|+|+|++|+++++.||+.|++++++.+.++.|+.+++.++.++. +..+|+|++++
T Consensus 58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~--------~~~sY~~la~~ 129 (467)
T PTZ00206 58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKT--------NIRTYEGVARV 129 (467)
T ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC--------CCCCHHHHHHH
Confidence 3456789999999999999999999999999999999999999999999999999988764 44599999999
Q ss_pred HhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCC-----CchhHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q 043105 116 VCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILG-----MSAKGFYIWSCLPFQLGLNSIATLTHLAPLS 190 (426)
Q Consensus 116 ~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~-----~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 190 (426)
++||++++++++++.+.++|.|++|+++.+|.++.+++...... ...+.+...+...+++|+++.|+++.++++|
T Consensus 130 ~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S 209 (467)
T PTZ00206 130 LLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVS 209 (467)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHH
Confidence 99999999999999999999999999999999999886532110 0112223344566789999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhcc-----------CCccccccCChhhHHHHHHHHHhhhccceeeccchhhcccc--cc
Q 043105 191 IFADVVDLAATAVVMVDEVVISLK-----------QMPEVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKK--EK 257 (426)
Q Consensus 191 ~~~~~~~~~~~~~~i~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p--~~ 257 (426)
.++..++++.++.++++......+ +..+...++...+.+.++++++|||.||.+++++++||||| +|
T Consensus 210 ~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~ 289 (467)
T PTZ00206 210 TIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGK 289 (467)
T ss_pred HHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhH
Confidence 999988887776666544322111 01122233334578899999999999999999999999984 78
Q ss_pred chhhHHHHHHHHHHHHHHHHhHhhhhcCCccccchhcccC-C-chHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcCC
Q 043105 258 FGGILGLSVTFIALMYVGFGVLGYFAFGSETKDIITANLG-A-GFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGG 335 (426)
Q Consensus 258 ~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~i~~~~~-~-~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~ 335 (426)
+.+++..++.+++++|..+|++||+.||++++++++.|++ . |....+++++..+.++.+||++.+|+|+.+++.+..+
T Consensus 290 ~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~ 369 (467)
T PTZ00206 290 FVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWD 369 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999994 3 5677788888999999999999999999998886322
Q ss_pred --cchhH----HHHHHHHHHHHHHhhcCCccchhhhhchhhhhhhHhHHHHHHHHHH---hccccchHHHHHHHHHHHHH
Q 043105 336 --EYCLW----LRWLLVFLVSLVAMSVPNFADFLSLVGSSVCCGLGFVLPALFHLLV---FKEEMGWKGWFLDVGIVVVG 406 (426)
Q Consensus 336 --~~~~~----~~~~~~~~~~~~a~~~~~~~~i~~~~G~~~~~~~~~ilP~l~~l~~---~~~~~~~~~~~~~~~~~~~g 406 (426)
+...| .+..+.+++.++|+++|+++.+++++|+++++.++|++|+++|++. .+++..+++++.++.++++|
T Consensus 370 ~~~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~G 449 (467)
T PTZ00206 370 ARKVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITG 449 (467)
T ss_pred cccCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHH
Confidence 11112 3344556678899999999999999999999999999999999984 23344556678899999999
Q ss_pred HHHHHHhHHHHHHHHH
Q 043105 407 VVFGVSGTWYALMEIL 422 (426)
Q Consensus 407 ~~~~v~~~~~~i~~ii 422 (426)
++..+.|||+++++.+
T Consensus 450 v~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 450 VIAIVFGTGATIWGVT 465 (467)
T ss_pred hheEEecchhHhhHHh
Confidence 9999999999999976
No 3
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=8.9e-52 Score=394.33 Aligned_cols=389 Identities=25% Similarity=0.438 Sum_probs=339.2
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhh
Q 043105 33 KPAPLSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDL 112 (426)
Q Consensus 33 ~~~~~~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l 112 (426)
.++++.|++++.++.+|.++|+|+|+||+++++.||..|+++++..++++.||..++.+|.+..+.. ..+++++|+|+
T Consensus 33 ~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~--~~~r~~~Y~dl 110 (437)
T KOG1303|consen 33 TPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAV--PGKRRYRYPDL 110 (437)
T ss_pred ccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCccCCChHHH
Confidence 4577899999999999999999999999999999999999999999999999999999999988654 33455899999
Q ss_pred HHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCC--CchhHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q 043105 113 GFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILG--MSAKGFYIWSCLPFQLGLNSIATLTHLAPLS 190 (426)
Q Consensus 113 ~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~--~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 190 (426)
++++||++++.++.+++.+.+++.++.|++..+|+++.+++...... .. ...+++++..+.+|++++|+++.++++|
T Consensus 111 ~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~-~~~f~iif~~i~~~~s~lp~~~~l~~~S 189 (437)
T KOG1303|consen 111 GQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLD-KQYFIIIFGLIVLPLSQLPNFHSLSYLS 189 (437)
T ss_pred HHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc-ceehhhhHHHHHHHHHHCCCcchhHHHH
Confidence 99999999999999999999999999999999999999988765322 22 3445568889999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhccC-C--ccccccCChhhHHHHHHHHHhhhccceeeccchhhccccccchhhHHHHHH
Q 043105 191 IFADVVDLAATAVVMVDEVVISLKQ-M--PEVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKEKFGGILGLSVT 267 (426)
Q Consensus 191 ~~~~~~~~~~~~~~i~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~ 267 (426)
..+.+..+....+.+..+....... . .+....++....+++++++.|+|+||..+|+++.+||+|++|+|++..++.
T Consensus 190 ~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~~~lis~~ 269 (437)
T KOG1303|consen 190 LVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKKALLISYI 269 (437)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchhhhhHHHHHHH
Confidence 9999888887777766655443222 1 222222222222799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhhhcCCccccchhcccC-CchHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcCCcc---------
Q 043105 268 FIALMYVGFGVLGYFAFGSETKDIITANLG-AGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGGEY--------- 337 (426)
Q Consensus 268 ~~~~~Y~~~g~~gy~~fg~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~~--------- 337 (426)
+++++|+.+++.||++|||+++++++.|++ +.|+...+++++.++++.+++.+..|..+..|+..+.+..
T Consensus 270 ~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~~~~~~~ 349 (437)
T KOG1303|consen 270 IVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPDFKKRSLVL 349 (437)
T ss_pred HHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCccccccccce
Confidence 999999999999999999999999999996 7899999999999999999999999999999999874332
Q ss_pred hhHHHHHHHHHHHHHHhhcCCccchhhhhchhhhhhhHhHHHHHHHHHHhccccchHHHHHHHHH-HHHHHHHHHHhHHH
Q 043105 338 CLWLRWLLVFLVSLVAMSVPNFADFLSLVGSSVCCGLGFVLPALFHLLVFKEEMGWKGWFLDVGI-VVVGVVFGVSGTWY 416 (426)
Q Consensus 338 ~~~~~~~~~~~~~~~a~~~~~~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~~~~~~~~~~~~~~~-~~~g~~~~v~~~~~ 416 (426)
|...|..+++.+.++|..+|.|+++.+++|+....++.+++|+++|++.+|.++...+.+.+|.. ++++++.++.....
T Consensus 350 R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~ 429 (437)
T KOG1303|consen 350 RLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVG 429 (437)
T ss_pred eeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 22389999999999999999999999999999999999999999999998866566667778888 79999999999999
Q ss_pred HHHHHHcc
Q 043105 417 ALMEILSV 424 (426)
Q Consensus 417 ~i~~ii~~ 424 (426)
++++++.+
T Consensus 430 ~~~~li~~ 437 (437)
T KOG1303|consen 430 GVRSLIID 437 (437)
T ss_pred HHHHHhhC
Confidence 99887753
No 4
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=1.7e-47 Score=373.93 Aligned_cols=386 Identities=16% Similarity=0.144 Sum_probs=312.0
Q ss_pred CCCCChHHHHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCc-----cccch
Q 043105 35 APLSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFT-----KINSF 109 (426)
Q Consensus 35 ~~~~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~-----~~~~y 109 (426)
.++.+..++.+++.++.+|.|+|+||++|++.||+.|++.+++.++++.||.+++.+++.++.++++++. ...+|
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~ 122 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW 122 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999998776554322111 11378
Q ss_pred hhhHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 043105 110 GDLGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPL 189 (426)
Q Consensus 110 ~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~ 189 (426)
.|+++..+||+++.+...+..+++++.|+.|++..++.+..+.+.. +.+.| ..++.++++|+++.|+++.++++
T Consensus 123 ~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~-----~~~~~-~~i~~~v~~~~~~i~sl~~l~~~ 196 (473)
T PLN03074 123 FEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNL-----DKRTW-TYIFGACCATTVFIPSFHNYRIW 196 (473)
T ss_pred HHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCc-----CCCeE-EeehHHHHHHHHHccCHHHHHHH
Confidence 9999999999999999999999999999999999888877663221 22333 34666777888999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhccCCccccccCChhhHHHHHHHHHhhhccceeeccchhhccccccchhhHHHHHHHH
Q 043105 190 SIFADVVDLAATAVVMVDEVVISLKQMPEVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKEKFGGILGLSVTFI 269 (426)
Q Consensus 190 s~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~ 269 (426)
|.++..+.+.....++.........+..+...+.++...+.++++++|+|.||..+|++++|||||+|++++...+...+
T Consensus 197 S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~F~~~~~l~~~~v 276 (473)
T PLN03074 197 SFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLAATLYV 276 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHHHHhcccccHHHHHHhccChhcccchHHHHHHHH
Confidence 99998876554333333332221211111112235667777888899999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhhhhcCCcccc--chhcccCCchHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcCCcc-----hhHHH
Q 043105 270 ALMYVGFGVLGYFAFGSETKD--IITANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGGEY-----CLWLR 342 (426)
Q Consensus 270 ~~~Y~~~g~~gy~~fg~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~~-----~~~~~ 342 (426)
+.+|+.+++.||++|||++.+ +.+.|.|++.....+++++.++.+.+|++++.|+.+..|+....++. +...|
T Consensus 277 ~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~~~k~~~~r~~~R 356 (473)
T PLN03074 277 LTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSGWRDAAVILMLIHQFITFGFACTPLYFVWEKAIGVHDTKSICLRALAR 356 (473)
T ss_pred HHHHHHHHHeeeeeechhhhhchhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccccccHHHHHHHH
Confidence 999999999999999999764 55777887766788999999999999999999999999888754321 12278
Q ss_pred HHHHHHHHHHHhhcCCccchhhhhchhhhhhhHhHHHHHHHHHHhccc-------------cchH--HHHHHHHHHHH-H
Q 043105 343 WLLVFLVSLVAMSVPNFADFLSLVGSSVCCGLGFVLPALFHLLVFKEE-------------MGWK--GWFLDVGIVVV-G 406 (426)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~~~-------------~~~~--~~~~~~~~~~~-g 406 (426)
..++.++.++|..+|+|+.+++++|+++++.+++++|+++|++.++++ .++| ..+.|+.++++ +
T Consensus 357 ~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~ 436 (473)
T PLN03074 357 LPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVL 436 (473)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhh
Confidence 899999999999999999999999999999999999999999876532 2223 35889999986 4
Q ss_pred HHHHHHhHHHHHHHHHcccC
Q 043105 407 VVFGVSGTWYALMEILSVKK 426 (426)
Q Consensus 407 ~~~~v~~~~~~i~~ii~~~~ 426 (426)
++..+.|+|+++++++++.+
T Consensus 437 ~~g~~~G~~asi~~ii~~~~ 456 (473)
T PLN03074 437 VVGFGFGGWASMTNFVRQID 456 (473)
T ss_pred hHhhccchHHHHHHHHHhhh
Confidence 55468999999999998753
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=4.7e-51 Score=399.71 Aligned_cols=379 Identities=30% Similarity=0.509 Sum_probs=324.7
Q ss_pred CCCChHHHHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhHHH
Q 043105 36 PLSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGFV 115 (426)
Q Consensus 36 ~~~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~ 115 (426)
+|.|.++++++++|+++|+|+|++|+++++.||+.|++++++.+.++.+|.+++.++.+..+ ++++..+|+|++++
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~----~~~~~~~y~~l~~~ 76 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP----NGTGRRSYGDLARR 76 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc----cccccccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999988764 12578899999999
Q ss_pred HhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 043105 116 VCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFADV 195 (426)
Q Consensus 116 ~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 195 (426)
.+||++++++++++.+.++|.+++|++..+|.++.+++...+.....+.++.++..++++|+++.|+++.+++.|.++.+
T Consensus 77 ~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~ 156 (409)
T PF01490_consen 77 AFGPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLF 156 (409)
T ss_pred cccccccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHHhhhhhh
Confidence 99999999999999999999999999999999999988754322233455556778888999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhhhcc---CCcc--ccccCChhhHHHHHHHHHhhhccceeeccchhhccccccch---hhHHHHHH
Q 043105 196 VDLAATAVVMVDEVVISLK---QMPE--VAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKEKFG---GILGLSVT 267 (426)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~---~~~~~~~~ 267 (426)
+++..+.+........... +..+ .....++.++.+++++++|||.||.++|++++|||||+|++ ++...++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~ 236 (409)
T PF01490_consen 157 SIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMI 236 (409)
T ss_pred ccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhh
Confidence 8887533333222221111 1111 11233567999999999999999999999999999997766 99999999
Q ss_pred HHHHHHHHHHhHhhhhcCCccccchhcccCCc-hHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcCC-----------
Q 043105 268 FIALMYVGFGVLGYFAFGSETKDIITANLGAG-FVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGG----------- 335 (426)
Q Consensus 268 ~~~~~Y~~~g~~gy~~fg~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~----------- 335 (426)
+++++|+.+|+.||++||++++++++.|+|++ +...+++.++.++++.++|++.+|.++.+++.+.++
T Consensus 237 ~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~ 316 (409)
T PF01490_consen 237 ICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNT 316 (409)
T ss_pred hhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheeccccccccccccc
Confidence 99999999999999999999999999999886 699999999999999999999999999999988642
Q ss_pred cc----hhHHHHHHHHHHHHHHhhcCCccchhhhhchhhhhhhHhHHHHHHHHHHhccccchHHH-----HHHHHHHHHH
Q 043105 336 EY----CLWLRWLLVFLVSLVAMSVPNFADFLSLVGSSVCCGLGFVLPALFHLLVFKEEMGWKGW-----FLDVGIVVVG 406 (426)
Q Consensus 336 ~~----~~~~~~~~~~~~~~~a~~~~~~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~~~~~~~~~-----~~~~~~~~~g 406 (426)
+. +...|..++..+.++|..+||++++++++|++++..+.|++|+++|++.+++++.++++ ..++..+++|
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 396 (409)
T PF01490_consen 317 PSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFG 396 (409)
T ss_pred cccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEe
Confidence 11 11278888999999999999999999999999999999999999999999866443332 4578999999
Q ss_pred HHHHHHhHHHHH
Q 043105 407 VVFGVSGTWYAL 418 (426)
Q Consensus 407 ~~~~v~~~~~~i 418 (426)
+++.+.|+|+++
T Consensus 397 ~~~~~~~~~~~i 408 (409)
T PF01490_consen 397 VVLMVFGTYQSI 408 (409)
T ss_pred eehhHHhHHHHc
Confidence 999999999875
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-42 Score=330.23 Aligned_cols=380 Identities=23% Similarity=0.398 Sum_probs=323.3
Q ss_pred CCCCChHHHHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhHH
Q 043105 35 APLSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGF 114 (426)
Q Consensus 35 ~~~~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~~ 114 (426)
+++.|.+.+++++.|+++|+|++++|++|++.|.+.|++++...+.++.++.+++.++.++.+. .+|+++++
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~--------~ty~~l~~ 74 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGE--------RTYSSLGD 74 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCC--------CCHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999999999743 29999999
Q ss_pred HHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccc--cCC---CchhHH-HHHHHHHHHHHhhhhhhhhhhhH
Q 043105 115 VVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTST--ILG---MSAKGF-YIWSCLPFQLGLNSIATLTHLAP 188 (426)
Q Consensus 115 ~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~--~~~---~~~~~~-~~~i~~~~~~pl~~~~~l~~l~~ 188 (426)
+.+|+.++....+.......| +++|++..+|.++.+..... ++. +..+.. +++....++.|+++.|++..++.
T Consensus 75 ~~~g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~ 153 (411)
T KOG1305|consen 75 LIFGKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKY 153 (411)
T ss_pred HHcCCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHH
Confidence 999999977777777777777 79999999999996644322 110 122222 35577788899999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhc---cCCccccccCChhhHHHHHHHHHhhhccceeeccchhhcccc--ccchhhHH
Q 043105 189 LSIFADVVDLAATAVVMVDEVVISL---KQMPEVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKK--EKFGGILG 263 (426)
Q Consensus 189 ~s~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p--~~~~~~~~ 263 (426)
.|.++..+.++.+..+++....... ....+.+....+++...+++++.|||.||++..++++||||| +|++++..
T Consensus 154 tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~ 233 (411)
T KOG1305|consen 154 TSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSN 233 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHH
Confidence 9999999999998888887766332 111111111123689999999999999999999999999998 56999999
Q ss_pred HHHHHHHHHHHHHHhHhhhhcCCccccchhcccCCch-------HHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcCCc
Q 043105 264 LSVTFIALMYVGFGVLGYFAFGSETKDIITANLGAGF-------VSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGGE 336 (426)
Q Consensus 264 ~~~~~~~~~Y~~~g~~gy~~fg~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~ 336 (426)
.+...+.++|..+|.+||+.||+++.+|++.++|++. ....++..+.++++..+|+..+|+|..+++...+++
T Consensus 234 ~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~ 313 (411)
T KOG1305|consen 234 IAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQ 313 (411)
T ss_pred HHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccC
Confidence 9999999999999999999999999999999998742 247889999999999999999999999888775432
Q ss_pred c---------hhHHHHHHHHHHHHHHhhcCCccchhhhhchhhhhhhHhHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Q 043105 337 Y---------CLWLRWLLVFLVSLVAMSVPNFADFLSLVGSSVCCGLGFVLPALFHLLVFKEEMGWKGWFLDVGIVVVGV 407 (426)
Q Consensus 337 ~---------~~~~~~~~~~~~~~~a~~~~~~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~~~~~~~~~~~~~~~~~~g~ 407 (426)
. +...+..++....+.|+.+|+++++.+++|++.+..++|++|+++|++..|+ +.+++...+....+++
T Consensus 314 ~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~~~~ 391 (411)
T KOG1305|consen 314 PGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALIFLILGV 391 (411)
T ss_pred CCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHHHHHH
Confidence 1 2336677788889999999999999999999999999999999999999877 6778889999999999
Q ss_pred HHHHHhHHHHHHHHHccc
Q 043105 408 VFGVSGTWYALMEILSVK 425 (426)
Q Consensus 408 ~~~v~~~~~~i~~ii~~~ 425 (426)
...+.|+...+.++..+.
T Consensus 392 ~~~i~~~~~~i~~~~~~~ 409 (411)
T KOG1305|consen 392 LLSIIGVAVMIYDLLAKN 409 (411)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999988764
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-44 Score=317.59 Aligned_cols=388 Identities=24% Similarity=0.353 Sum_probs=343.2
Q ss_pred CCCCCCCChHHHHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhh
Q 043105 32 GKPAPLSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGD 111 (426)
Q Consensus 32 ~~~~~~~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~ 111 (426)
++.+.+++.+|+..|+.|++-|.=+++||+++...||+ ++..++.++.++.||+.++++|..+-+...+.-+.+.+|.+
T Consensus 111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYva 189 (524)
T KOG4303|consen 111 GEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVA 189 (524)
T ss_pred CCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHH
Confidence 45668999999999999999999999999999987774 69999999999999999999999876543333467789999
Q ss_pred hHHHHhccc-chhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q 043105 112 LGFVVCGSI-GRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLS 190 (426)
Q Consensus 112 l~~~~~G~~-~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 190 (426)
+++.++++. +++.+.+.+.+.+..+|+.|.++.+|.++..+|+.+ .+.+.|.+ +..+.++|.+++|++|..+.+|
T Consensus 190 IA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~s---vd~~sWm~-i~~a~LLpc~FLk~Lk~VS~lS 265 (524)
T KOG4303|consen 190 IADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLS---VDKASWMM-ITSASLLPCSFLKDLKIVSRLS 265 (524)
T ss_pred HHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCC---ccccchhh-hhhHHHhhhHHHHHHHHHHHHH
Confidence 999999887 668999999999999999999999999999998754 34456654 7788889999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhh-ccCCccccccCChhhHHHHHHHHHhhhccceeeccchhhccccccchhhHHHHHHHH
Q 043105 191 IFADVVDLAATAVVMVDEVVIS-LKQMPEVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKEKFGGILGLSVTFI 269 (426)
Q Consensus 191 ~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~ 269 (426)
+++++.-++.-++++.++.... +..+......-+..+++.++++++|+|..|..+|++...|+||.++...+.++-+.+
T Consensus 266 f~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn~Ml~WsHIAA 345 (524)
T KOG4303|consen 266 FFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFNVMLKWSHIAA 345 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhHheeeeehHHHHH
Confidence 9999999888888877776553 223333222235678889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhhhhcCCccccchhcccCCchHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcCC--------------
Q 043105 270 ALMYVGFGVLGYFAFGSETKDIITANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGG-------------- 335 (426)
Q Consensus 270 ~~~Y~~~g~~gy~~fg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~-------------- 335 (426)
.++-..+|..||++|+++++..+..|+|+..++.+++++.++--+.+||+-.+.+.+.+++.+...
T Consensus 346 aVfK~~Fg~~~fLTf~~~TqevItnnLp~qsfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscys~Dg 425 (524)
T KOG4303|consen 346 AVFKVVFGMLGFLTFGELTQEVITNNLPNQSFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSCYSPDG 425 (524)
T ss_pred HHHHHHHHHheeeeechhhHHHHhcCCCccchhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCceeeCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999876422
Q ss_pred cchhH---HHHHHHHHHHHHHhhcCCccchhhhhchhhhhhhHhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH
Q 043105 336 EYCLW---LRWLLVFLVSLVAMSVPNFADFLSLVGSSVCCGLGFVLPALFHLLVFKEEMGWKGWFLDVGIVVVGVVFGVS 412 (426)
Q Consensus 336 ~~~~~---~~~~~~~~~~~~a~~~~~~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~~~~~~~~~~~~~~~~~~g~~~~v~ 412 (426)
+.+.| .|..+++++.++|+++|.+..+++++|++.++.++|++|+++++++++++..+.++..+..++++|..+.+.
T Consensus 426 ~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vs 505 (524)
T KOG4303|consen 426 SLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVS 505 (524)
T ss_pred chhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEE
Confidence 12334 899999999999999999999999999999999999999999999999888888999999999999999999
Q ss_pred hHHHHHHHHHcc
Q 043105 413 GTWYALMEILSV 424 (426)
Q Consensus 413 ~~~~~i~~ii~~ 424 (426)
|.|.+..++++.
T Consensus 506 G~y~S~~~Li~A 517 (524)
T KOG4303|consen 506 GVYFSSMELIRA 517 (524)
T ss_pred eEehhhHHHHHH
Confidence 999999888765
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=6.1e-33 Score=267.74 Aligned_cols=380 Identities=17% Similarity=0.142 Sum_probs=296.2
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhh
Q 043105 33 KPAPLSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDL 112 (426)
Q Consensus 33 ~~~~~~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l 112 (426)
..+++.+..+++.++.+++||+|+|++|++++..|++.+++++++.+..++++..++.|+..+.++ ++.++.++
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~------~~~~~~~~ 77 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPN------GKASITSL 77 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------CcccHHHH
Confidence 356778899999999999999999999999999999999999999999999999999999999743 22699999
Q ss_pred HHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 043105 113 GFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIF 192 (426)
Q Consensus 113 ~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 192 (426)
+++.+||+++++.++.+.+.+++.+.+|.+..+|.+++.+++........+....+++..++.+++..++...++..+.+
T Consensus 78 ~~~~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l 157 (415)
T COG0814 78 VEDYLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLL 157 (415)
T ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999998743221134566666777777789999999999999998
Q ss_pred HHHHHHHHhhhhhhhhhhhhccCCccc--cccCChhhHHHHHHHHHhhhccceeeccchhhcccc-cc-chhhHHHHHHH
Q 043105 193 ADVVDLAATAVVMVDEVVISLKQMPEV--AAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKK-EK-FGGILGLSVTF 268 (426)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~-~~~~~~~~~~~ 268 (426)
....++..+....+............. .....+..+..++|++.|||+||+++|++++|||++ ++ .+|+..++..+
T Consensus 158 ~~~~v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~ 237 (415)
T COG0814 158 VFGKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLI 237 (415)
T ss_pred HHHHHHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHH
Confidence 877777766666554433211111010 002357789999999999999999999999999986 44 99999999999
Q ss_pred HHHHHHHHHhHhhhhcCCccccchhcccCCch--------------HHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcC
Q 043105 269 IALMYVGFGVLGYFAFGSETKDIITANLGAGF--------------VSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKG 334 (426)
Q Consensus 269 ~~~~Y~~~g~~gy~~fg~~~~~~i~~~~~~~~--------------~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~ 334 (426)
..++|..+++++|..+|+++.++++++.+++. .....++...+.+.++|-.+....+|..++.++.
T Consensus 238 ~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~ 317 (415)
T COG0814 238 ALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKK 317 (415)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHh
Confidence 99999999999999999999999998886532 3445556666666777666666777777777753
Q ss_pred Cc--c---hhH------HHHHHHHHHHHHHhhcCCccchhhhhchhhhhhhHhHHHHHHHHHHhccccchHHHHHHHHHH
Q 043105 335 GE--Y---CLW------LRWLLVFLVSLVAMSVPNFADFLSLVGSSVCCGLGFVLPALFHLLVFKEEMGWKGWFLDVGIV 403 (426)
Q Consensus 335 ~~--~---~~~------~~~~~~~~~~~~a~~~~~~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~~~~~~~~~~~~~~~~ 403 (426)
++ . ..+ .....+.....++...+....+.+.+|+.....+.++.|...+.+....+..+.++...++++
T Consensus 318 ~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~ 397 (415)
T COG0814 318 SNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVL 397 (415)
T ss_pred ccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHH
Confidence 11 1 111 222233444566666777887888888888888888888777777665443333235788899
Q ss_pred HHHHHHHHHhHHHHH
Q 043105 404 VVGVVFGVSGTWYAL 418 (426)
Q Consensus 404 ~~g~~~~v~~~~~~i 418 (426)
++|+..++...++..
T Consensus 398 ~~Gi~~~~~~~~~~~ 412 (415)
T COG0814 398 LFGILVILSPFLATF 412 (415)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999888887776553
No 9
>PRK10483 tryptophan permease; Provisional
Probab=99.97 E-value=1.1e-27 Score=227.11 Aligned_cols=371 Identities=11% Similarity=0.032 Sum_probs=274.1
Q ss_pred CCCCCChHHHHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhH
Q 043105 34 PAPLSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLG 113 (426)
Q Consensus 34 ~~~~~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~ 113 (426)
++++.+.+++...+.++.||+|+|++|.+.++.|...+++++++.+....+|+.++.|...+. ++..++.+++
T Consensus 7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~-------~~g~~~~tma 79 (414)
T PRK10483 7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNY-------RIGSSFDTIT 79 (414)
T ss_pred ccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCCCHHHHH
Confidence 467799999999999999999999999999999999999999999999999999999998776 4678999999
Q ss_pred HHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 043105 114 FVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFA 193 (426)
Q Consensus 114 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 193 (426)
|+.+||+|+.+.++.+.+..++.+++|+...||.+++.+++.+ .+.+ .+...+.+.+.+......+.+...+++..-
T Consensus 80 ~~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~-~~i~--~~~~~llF~~~~~~iv~~gt~~vd~~n~~l 156 (414)
T PRK10483 80 KDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMS-LNVP--ARAAGFGFALLVAFVVWLSTKAVSRMTAIV 156 (414)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcC-CCCc--HHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999987622 1112 222222222222223334556666666555
Q ss_pred HHHHHHHhhhhhhhhhhhhcc---CCccccccCChhhHHHHHHHHHhhhccceeeccchhhccc-cccchhhHHHHHHHH
Q 043105 194 DVVDLAATAVVMVDEVVISLK---QMPEVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEK-KEKFGGILGLSVTFI 269 (426)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~-p~~~~~~~~~~~~~~ 269 (426)
...++......+....+..+. ..........+..+..+++++.+||+.|+++|++.+.+++ ++|.+|++..+..+.
T Consensus 157 ~~~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~Ip 236 (414)
T PRK10483 157 LGAKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMA 236 (414)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 544444444333332222211 0111111123556889999999999999999999999886 589999999999999
Q ss_pred HHHHHHHHhHhhhhcCCcc-------ccc---hhcc----cCCchHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcCC
Q 043105 270 ALMYVGFGVLGYFAFGSET-------KDI---ITAN----LGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGG 335 (426)
Q Consensus 270 ~~~Y~~~g~~gy~~fg~~~-------~~~---i~~~----~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~ 335 (426)
.++|+..=..+....+++. .+| .++. .++.+...+..++..+.+.+||-......+|.+.+.++.+
T Consensus 237 lv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~ 316 (414)
T PRK10483 237 LALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFD 316 (414)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999986555555444221 111 1111 2334666778888999999999999999999999999865
Q ss_pred cc--hh-HHHHHHHHHHHHHHhhcCC-ccchhhhhchhhhhhhHhHHHHHHHHHHhcc-ccchH----HHHHHHHHHHHH
Q 043105 336 EY--CL-WLRWLLVFLVSLVAMSVPN-FADFLSLVGSSVCCGLGFVLPALFHLLVFKE-EMGWK----GWFLDVGIVVVG 406 (426)
Q Consensus 336 ~~--~~-~~~~~~~~~~~~~a~~~~~-~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~~-~~~~~----~~~~~~~~~~~g 406 (426)
+. .+ ....+..+.+.+++.+.|+ |-..+++.|.. ..++..++|++|.++.||+ ..+.+ .+.....++++|
T Consensus 317 ~~~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~Gg~~~l~~~~~~g 395 (414)
T PRK10483 317 DSAMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKRFGSPKFRVWGGKPMIVLILLFG 395 (414)
T ss_pred CccccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCceecCCHHHHHHHHHHH
Confidence 42 11 1233456678999999998 88999999975 7788899999999999975 22222 345557777777
Q ss_pred HHHHHHhHH
Q 043105 407 VVFGVSGTW 415 (426)
Q Consensus 407 ~~~~v~~~~ 415 (426)
+...+.-..
T Consensus 396 ~~~i~~~i~ 404 (414)
T PRK10483 396 VGNALVHIL 404 (414)
T ss_pred HHHHHHHHH
Confidence 776655443
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.96 E-value=2.2e-27 Score=227.66 Aligned_cols=366 Identities=15% Similarity=0.104 Sum_probs=272.2
Q ss_pred CCCChHHHHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhHHH
Q 043105 36 PLSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGFV 115 (426)
Q Consensus 36 ~~~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~ 115 (426)
++.+.+++.+.+.++.||+|+|+||.+..+.|...+.+.+++++..+++++.++.|...+. ++..++.+++++
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~-------~~~~~~~~~a~~ 73 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNT-------PEGSSLTSMAEK 73 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCCHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999999988876 457899999999
Q ss_pred HhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 043105 116 VCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFADV 195 (426)
Q Consensus 116 ~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 195 (426)
.+||+++++..+.+.+..++.+++|....++.++++++...+.... +.+...++.++ +......+.|...+++...+.
T Consensus 74 ~lG~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~-~~~~~~~f~~i-~~~iv~~g~~~v~~~n~~lv~ 151 (394)
T PF03222_consen 74 YLGKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLS-PWLSSLLFTII-FGGIVYFGTKAVDRINRVLVF 151 (394)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCc-HHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998876432222 22222222222 222223344456666655555
Q ss_pred HHHHHhhhhhhhhhhhhccCCc--cccccCChhhHHHHHHHHHhhhccceeeccchhhccc-cccchhhHHHHHHHHHHH
Q 043105 196 VDLAATAVVMVDEVVISLKQMP--EVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEK-KEKFGGILGLSVTFIALM 272 (426)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~-p~~~~~~~~~~~~~~~~~ 272 (426)
..+..+........+..+.+.- ..+...++...+.++++..+||+.|+.+|++.+.+++ ++|.+|++..+..+..++
T Consensus 152 ~~i~~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~ 231 (394)
T PF03222_consen 152 GMIISFIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVM 231 (394)
T ss_pred HHHHHHHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 5555544444444433321111 1122346889999999999999999999999999985 688999999999999999
Q ss_pred HHHHHhHhhhhcCC-----------cccc--chhccc-CCchHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcCCcc-
Q 043105 273 YVGFGVLGYFAFGS-----------ETKD--IITANL-GAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGGEY- 337 (426)
Q Consensus 273 Y~~~g~~gy~~fg~-----------~~~~--~i~~~~-~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~~- 337 (426)
|+..-......... +..+ ..+.+. ++.+...+..++..+.+.+||--.....+|.+.+.++.++.
T Consensus 232 yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~~~~ 311 (394)
T PF03222_consen 232 YLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLKNNS 311 (394)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 99764444432221 1111 122333 34567888899999999999999999999999999976332
Q ss_pred -hhH-HHHHHHHHHHHHHhhcCC-ccchhhhhchhhhhhhHhHHHHHHHHHHhccccc-hH----HHHHHHHHHHHHHHH
Q 043105 338 -CLW-LRWLLVFLVSLVAMSVPN-FADFLSLVGSSVCCGLGFVLPALFHLLVFKEEMG-WK----GWFLDVGIVVVGVVF 409 (426)
Q Consensus 338 -~~~-~~~~~~~~~~~~a~~~~~-~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~~~~~-~~----~~~~~~~~~~~g~~~ 409 (426)
.+. ...+....+.++|...|+ |...+++.| ....++..++|+++.+|.|+++.. .+ .+.....++++|++.
T Consensus 312 ~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~~~~~~gg~~~l~~~~~~~i~i 390 (394)
T PF03222_consen 312 SGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQPYRVPGGNFTLLLVIIFGILI 390 (394)
T ss_pred cchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCCCeEEeCcHHHHHHHHHHHHHH
Confidence 122 223334556888999988 889999999 888999999999999999875422 12 355666666666655
Q ss_pred HH
Q 043105 410 GV 411 (426)
Q Consensus 410 ~v 411 (426)
.+
T Consensus 391 ii 392 (394)
T PF03222_consen 391 II 392 (394)
T ss_pred HH
Confidence 43
No 11
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.96 E-value=7.8e-27 Score=221.16 Aligned_cols=370 Identities=11% Similarity=0.093 Sum_probs=268.7
Q ss_pred CCCChHHHHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhHHH
Q 043105 36 PLSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGFV 115 (426)
Q Consensus 36 ~~~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~ 115 (426)
+|.+.+.+...+.+++||+|+|++|.+-++.|+..+.+.+++.+....+|+.++.|...+. ++..++.+++|+
T Consensus 7 ~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~-------~~g~~l~tma~~ 79 (415)
T PRK09664 7 KKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNY-------PVGSSFNTITKD 79 (415)
T ss_pred hccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCCCHHHHHHH
Confidence 4458888999999999999999999999999999999999999999999999999998876 477899999999
Q ss_pred HhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 043105 116 VCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFADV 195 (426)
Q Consensus 116 ~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 195 (426)
.+||+|+.+.++.+.+..++.+++|+...|+.+++.+++..+...+ ..+.. +.+.+++......+.+...+.+.+-..
T Consensus 80 ~LG~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~-~~~~~-llF~~~~~~~v~~gt~~vd~~nr~l~~ 157 (415)
T PRK09664 80 LIGNTWNIISGITVAFVLYILTYAYISANGAIISETISMNLGYHAN-PRIVG-ICTAIFVASVLWISSLAASRITSLFLG 157 (415)
T ss_pred HcChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCc-HHHHH-HHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998752111112 22222 222222222333344555555554444
Q ss_pred HHHHHhhhhhhhhhhhhccCC-ccccccC----ChhhHHHHHHHHHhhhccceeeccchhhccc-cccchhhHHHHHHHH
Q 043105 196 VDLAATAVVMVDEVVISLKQM-PEVAAFG----NLSVFFYGIGVAVYAFEGIGMVLPLEAEMEK-KEKFGGILGLSVTFI 269 (426)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~-p~~~~~~~~~~~~~~ 269 (426)
.++......+....+..+.+. .+.+... .+..+..++|++.+||+.|+++|++.+.+++ ++|.+|++..+..+.
T Consensus 158 ~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~Ip 237 (415)
T PRK09664 158 LKIISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLA 237 (415)
T ss_pred HHHHHHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHHH
Confidence 444443333332222221110 1111111 1346888999999999999999999999886 588999999999999
Q ss_pred HHHHHHHHhHhhh-----------hcCCccccc---hhcccCCchHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcCC
Q 043105 270 ALMYVGFGVLGYF-----------AFGSETKDI---ITANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGG 335 (426)
Q Consensus 270 ~~~Y~~~g~~gy~-----------~fg~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~ 335 (426)
.++|+..=.+... ..|++.... ...+.+..+...+.+++..+.+.+||-......+|.+.+.++.+
T Consensus 238 LviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~ 317 (415)
T PRK09664 238 LVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKID 317 (415)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999754322222 122222221 12233445777888899999999999999999999999998765
Q ss_pred cc--hhH-HHHHHHHHHHHHHhhcCC-ccchhhhhchhhhhhhHhHHHHHHHHHHhcc-ccch----HHHHHHHHHHHHH
Q 043105 336 EY--CLW-LRWLLVFLVSLVAMSVPN-FADFLSLVGSSVCCGLGFVLPALFHLLVFKE-EMGW----KGWFLDVGIVVVG 406 (426)
Q Consensus 336 ~~--~~~-~~~~~~~~~~~~a~~~~~-~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~~-~~~~----~~~~~~~~~~~~g 406 (426)
+. .+. ...+..+.+.+++.+.|+ |-..+++.|.. ..++..++|++|.+|.||+ ..+. ..|...++++++|
T Consensus 318 ~~~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~GG~~~l~~~~~~g 396 (415)
T PRK09664 318 NSHGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVILFG 396 (415)
T ss_pred CccccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCceeeCCHHHHHHHHHHH
Confidence 42 122 233455678999999998 99999999985 6789999999999999975 2222 3466777888888
Q ss_pred HHHHHHhHH
Q 043105 407 VVFGVSGTW 415 (426)
Q Consensus 407 ~~~~v~~~~ 415 (426)
++..+.-..
T Consensus 397 ~~ii~~~~~ 405 (415)
T PRK09664 397 ITVILCWFG 405 (415)
T ss_pred HHHHHHHHH
Confidence 877765443
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.96 E-value=8e-27 Score=222.55 Aligned_cols=366 Identities=15% Similarity=0.117 Sum_probs=268.9
Q ss_pred CChHHHHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhHHHHh
Q 043105 38 SSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGFVVC 117 (426)
Q Consensus 38 ~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~ 117 (426)
.+.+.+.+.+.++.||+|+|+||.+....|.+.+++.+++++.+..++.+++.|+..+. ++..++.+++|+.+
T Consensus 3 ~~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~-------~~~~~~~~~a~~~L 75 (403)
T PRK15132 3 NRTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHV-------PADTGLGTLAKRYL 75 (403)
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------CCCCCHHHHHHHHh
Confidence 37889999999999999999999999999999999999999999999999999965543 46679999999999
Q ss_pred cccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH
Q 043105 118 GSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFADVVD 197 (426)
Q Consensus 118 G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~ 197 (426)
||+++++..+.+.+..+..+.+|....++.+.+.+++......+..... +.+.+...+....+.|...+++..-....
T Consensus 76 G~~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~--l~F~~~~~~iv~~g~~~v~~~n~~L~~~~ 153 (403)
T PRK15132 76 GRYGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGV--LLFTLVAGGVVCVGTSSVDLFNRFLFSAK 153 (403)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHH--HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999989888888765322222222222 22222222233334455555554444443
Q ss_pred HHHhhhhhhhhhhhhccCC-ccccccCChhhHHHHHHHHHhhhccceeeccchhhccc-cccchhhHHHHHHHHHHHHHH
Q 043105 198 LAATAVVMVDEVVISLKQM-PEVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEK-KEKFGGILGLSVTFIALMYVG 275 (426)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~-p~~~~~~~~~~~~~~~~~Y~~ 275 (426)
+...+.......++.+.+. .+.++ +...+..+++++.+||+.|+++|++.+.+++ ++|.+|++..+..+..++|+.
T Consensus 154 ii~~~~~~~~l~p~~~~~~L~~~~~--~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~ 231 (403)
T PRK15132 154 IIFLVVMLALMMPHIHKVNLLTLPL--QQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIF 231 (403)
T ss_pred HHHHHHHHHHHHHhcCHHHHhcCCc--cccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333221111 11111 1124889999999999999999999999886 588999999999999999998
Q ss_pred HHhHhhhhcCCccc----------cchhccc----CCchHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcCCcc---h
Q 043105 276 FGVLGYFAFGSETK----------DIITANL----GAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGGEY---C 338 (426)
Q Consensus 276 ~g~~gy~~fg~~~~----------~~i~~~~----~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~~---~ 338 (426)
.-..+....+.+.. +++++.+ +..+...+..++..+.+.+||-......+|.+.+.++.++. +
T Consensus 232 W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~~~~r 311 (403)
T PRK15132 232 WQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNTVGGR 311 (403)
T ss_pred HHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccCC
Confidence 87777766654421 1122222 33577788889999999999999999999999999864432 1
Q ss_pred hHHHHHHHHHHHHHHhhcCC-ccchhhhhchhhhhhhHhHHHHHHHHHHhccc-cchH----HHHHHHHHHHHHHHHHHH
Q 043105 339 LWLRWLLVFLVSLVAMSVPN-FADFLSLVGSSVCCGLGFVLPALFHLLVFKEE-MGWK----GWFLDVGIVVVGVVFGVS 412 (426)
Q Consensus 339 ~~~~~~~~~~~~~~a~~~~~-~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~~~-~~~~----~~~~~~~~~~~g~~~~v~ 412 (426)
.....+..+.+.++|...|+ |....++.|. ...++.+++|+++.+|.++++ .+++ .+...++++++|++..+.
T Consensus 312 ~~~~~l~flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~~ 390 (403)
T PRK15132 312 LQTGLITFLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIGI 390 (403)
T ss_pred chhehhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHHH
Confidence 12334556678899999998 8888999886 678999999999999998753 2222 467788888888887765
Q ss_pred hHH
Q 043105 413 GTW 415 (426)
Q Consensus 413 ~~~ 415 (426)
-..
T Consensus 391 ~~~ 393 (403)
T PRK15132 391 QFL 393 (403)
T ss_pred HHH
Confidence 443
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.96 E-value=5.2e-27 Score=227.12 Aligned_cols=336 Identities=14% Similarity=0.091 Sum_probs=257.8
Q ss_pred HHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhHHHHhcccchh
Q 043105 44 FANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGFVVCGSIGRG 123 (426)
Q Consensus 44 ~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~ 123 (426)
...++++++|+|++++|..+++.|+..+++.+++.+.++.++..++.|+..+. |+..++.+++++.+||++++
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~-------p~~~~~~~~~~~~~G~~~g~ 75 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTY-------PGGASFNTIAKDLLGKTGNI 75 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCCHHHHHHHHhCHHHHH
Confidence 45678999999999999999999999999999999999999999999998876 45679999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhh
Q 043105 124 IVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFADVVDLAATAV 203 (426)
Q Consensus 124 i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~ 203 (426)
+..+.+++.++..+.+|....++.+..+++........ + +...+...+++.....++.|..++++.+.+...+..+..
T Consensus 76 ~~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~-~-~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~l~~ 153 (381)
T TIGR00837 76 IAGLSLLFVLYILTYAYISGGGSILSRLIGEYFGFPWS-A-RAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIAFAL 153 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCcc-H-HHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988753222222 2 222233333344456678888888888887777666555
Q ss_pred hhhhhhhhhccC-Cccc-cccCChhhHHHHHHHHHhhhccceeeccchhhcc-ccccchhhHHHHHHHHHHHHHHHHhHh
Q 043105 204 VMVDEVVISLKQ-MPEV-AAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEME-KKEKFGGILGLSVTFIALMYVGFGVLG 280 (426)
Q Consensus 204 ~i~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~-~p~~~~~~~~~~~~~~~~~Y~~~g~~g 280 (426)
.+.....+.+.+ ..+. .....+.++..+++...++|++|++++++.+|++ |+||.+|++..+..+++++|+++....
T Consensus 154 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~ 233 (381)
T TIGR00837 154 VFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLAT 233 (381)
T ss_pred HHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544433322111 1010 0012456888999999999999989999999997 568899999999999999999988877
Q ss_pred hhhcCCccccch-------------hcc-cCCchHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcCCc---chhHHHH
Q 043105 281 YFAFGSETKDII-------------TAN-LGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGGE---YCLWLRW 343 (426)
Q Consensus 281 y~~fg~~~~~~i-------------~~~-~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~---~~~~~~~ 343 (426)
....+.+..++. ..+ .++.+...+...+..+.+.+++.....+.+|.+.+.++.++ ++.....
T Consensus 234 ~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~~~~~~~~~~ 313 (381)
T TIGR00837 234 MGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDSKKGRFKTGL 313 (381)
T ss_pred hCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCchhhh
Confidence 777665432211 111 23345677788888999999999999999999988886532 2222445
Q ss_pred HHHHHHHHHHhhcCCcc-chhhhhchhhhhhhHhHHHHHHHHHHhcc
Q 043105 344 LLVFLVSLVAMSVPNFA-DFLSLVGSSVCCGLGFVLPALFHLLVFKE 389 (426)
Q Consensus 344 ~~~~~~~~~a~~~~~~~-~i~~~~G~~~~~~~~~ilP~l~~l~~~~~ 389 (426)
+....+.++|.+.|+.. ..+++.| +...++.+++|++++++.||+
T Consensus 314 ~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 314 LTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred hhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 55567788899999844 8899999 788999999999999998765
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.93 E-value=7.4e-23 Score=194.12 Aligned_cols=364 Identities=15% Similarity=0.148 Sum_probs=262.4
Q ss_pred HHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhHHHHhcccch
Q 043105 43 TFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGFVVCGSIGR 122 (426)
Q Consensus 43 ~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~ 122 (426)
-...+.++.||+|+|+||......|.+..++.+++++..++++++.+.|.....+ ++..++.+++|+.+||+++
T Consensus 24 W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~------~~~~~i~~v~~~~lG~~g~ 97 (443)
T PRK13629 24 WTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGS------NPSGNITETVEEHFGKTGG 97 (443)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------CCCCCHHHHHHHHcChhHH
Confidence 3489999999999999999999999999999999999999999999999766542 4677999999999999999
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhh
Q 043105 123 GIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFADVVDLAATA 202 (426)
Q Consensus 123 ~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~ 202 (426)
.+.++.+.+..+..+.+|...+.+.+++.+.+..+.....+.+.. +.+++.+......+-+.+.+++..-....+..+.
T Consensus 98 ~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~s-lifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~~l~ 176 (443)
T PRK13629 98 VVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVA-LFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLV 176 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888865443211112233333 3333333333444556666666555555555555
Q ss_pred hhhhhhhhhhccCC---ccc---ccc---CChhhHHHHHHHHHhhhccceeeccchhh----cc-----c--cccchhhH
Q 043105 203 VVMVDEVVISLKQM---PEV---AAF---GNLSVFFYGIGVAVYAFEGIGMVLPLEAE----ME-----K--KEKFGGIL 262 (426)
Q Consensus 203 ~~i~~~~~~~~~~~---~~~---~~~---~~~~~~~~~~~~~~faf~~~~~i~~i~~~----m~-----~--p~~~~~~~ 262 (426)
....+.+++.+.+. .+. +.. .....+..++|++.+||+.|+.+|++... .+ | ++|.+|++
T Consensus 177 ~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii 256 (443)
T PRK13629 177 LISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQII 256 (443)
T ss_pred HHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHH
Confidence 44444444332111 010 111 11245888999999999999999999887 53 4 57789999
Q ss_pred HHHHHHHHHHHHHHHhHhhhhcCCccc-------cch----hcccCC---------chHHHHHHHHHHHHHHhhhccchh
Q 043105 263 GLSVTFIALMYVGFGVLGYFAFGSETK-------DII----TANLGA---------GFVSVLVQLGLCINLFFTFPLMMH 322 (426)
Q Consensus 263 ~~~~~~~~~~Y~~~g~~gy~~fg~~~~-------~~i----~~~~~~---------~~~~~~~~~~~~~~~~~s~pl~~~ 322 (426)
..+..+..++|+..-+.+....+++.. .++ .+.+++ .....+..+...+.+.+||-.+..
T Consensus 257 ~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~L 336 (443)
T PRK13629 257 SRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYL 336 (443)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988888887775531 121 122233 335667777888899999999999
Q ss_pred hHHHHHHHhhc-----CCc--c-hh----HHHHHHHHHHHHHHhhcCCccchhhhhchhhhhhhHhHHHHHHHHHHhccc
Q 043105 323 PVYEIVERRFK-----GGE--Y-CL----WLRWLLVFLVSLVAMSVPNFADFLSLVGSSVCCGLGFVLPALFHLLVFKEE 390 (426)
Q Consensus 323 ~~~~~~~~~~~-----~~~--~-~~----~~~~~~~~~~~~~a~~~~~~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~~~ 390 (426)
..+|.++.++. .++ . .+ .......+.+..++..-|++-.+++-+|+-....+.|++|...-.|.-.
T Consensus 337 Gl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~-- 414 (443)
T PRK13629 337 GTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPS-- 414 (443)
T ss_pred HHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHH--
Confidence 99999988873 111 1 11 1333445566788888899999999888888899999999988777643
Q ss_pred cchHH-HHHHHHHHHHHHHHHHHhHH
Q 043105 391 MGWKG-WFLDVGIVVVGVVFGVSGTW 415 (426)
Q Consensus 391 ~~~~~-~~~~~~~~~~g~~~~v~~~~ 415 (426)
.+++| +..++.+++.|++......|
T Consensus 415 l~~yr~~~~n~fv~~~Gl~~i~~~~~ 440 (443)
T PRK13629 415 LAKYRGRLDNVFVTVIGLLTILNIVY 440 (443)
T ss_pred HHHhCCCchhHHHHHHHHHHHHHHHH
Confidence 22233 34578899988887765544
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.92 E-value=7.3e-23 Score=196.02 Aligned_cols=358 Identities=14% Similarity=0.060 Sum_probs=264.3
Q ss_pred HHHHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhHHHHhccc
Q 043105 41 TKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGFVVCGSI 120 (426)
Q Consensus 41 ~~~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~ 120 (426)
..-.+.+.++++|+|+|.+|...++.||...++..+++..+.+++..++.|.....+ .+..++.|++|+.+||+
T Consensus 6 ~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~------~p~~~i~~~~~~~fGk~ 79 (397)
T TIGR00814 6 TGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSK------NPCEDITEVVEEHFGKN 79 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCCCCHHHHHHHHcCHH
Confidence 345788999999999999999999999999999999999999999999988754431 24679999999999999
Q ss_pred chhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHH
Q 043105 121 GRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFADVVDLAA 200 (426)
Q Consensus 121 ~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 200 (426)
++.+.++.+.+..+..+.+|....++.+.+++.+....... ..+...+..++.+-.....+.+.+.+++.+.....+..
T Consensus 80 ~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p-~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~ 158 (397)
T TIGR00814 80 WGILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPP-LRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLI 158 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988887653221112 23333344444444556678888888888777666665
Q ss_pred hhhhhhhhhhhhccCCc-cccc-cCChhhHHHHHHHHHhhhccceeeccch----hhcc--c--cccchhhHHHHHHHHH
Q 043105 201 TAVVMVDEVVISLKQMP-EVAA-FGNLSVFFYGIGVAVYAFEGIGMVLPLE----AEME--K--KEKFGGILGLSVTFIA 270 (426)
Q Consensus 201 ~~~~i~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~----~~m~--~--p~~~~~~~~~~~~~~~ 270 (426)
+........+..+.+.- +.+. ...+.++..++++..+||.+|+.+|+.. +|.+ | ++|.+|+...+..+..
T Consensus 159 l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~ 238 (397)
T TIGR00814 159 LVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILV 238 (397)
T ss_pred HHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHH
Confidence 55555544444321111 1111 1236789999999999999999999997 3444 3 4678999999999999
Q ss_pred HHHHHHHhHhhhhcCCcccc-----ch--hc----ccCCchHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhc----C-
Q 043105 271 LMYVGFGVLGYFAFGSETKD-----II--TA----NLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFK----G- 334 (426)
Q Consensus 271 ~~Y~~~g~~gy~~fg~~~~~-----~i--~~----~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~----~- 334 (426)
++|+..-+.+....+++... ++ +. ..+......+..+...+.+.+||-.+....+|.+.+++. .
T Consensus 239 ~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~ 318 (397)
T TIGR00814 239 ATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMK 318 (397)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccc
Confidence 99999988888888765421 11 22 234456777888889999999999999999999999882 1
Q ss_pred -C-cchhH----HHHHHHHHHHHHHhhcCCccchhhhhchhhhhhhHhHHHHHHHHHHhccccchHH-HHHHHHHHHHHH
Q 043105 335 -G-EYCLW----LRWLLVFLVSLVAMSVPNFADFLSLVGSSVCCGLGFVLPALFHLLVFKEEMGWKG-WFLDVGIVVVGV 407 (426)
Q Consensus 335 -~-~~~~~----~~~~~~~~~~~~a~~~~~~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~~~~~~~~-~~~~~~~~~~g~ 407 (426)
+ ..++. ......+.+..++..-|++-.+++-+|+-....+.|++|...-.|.-. .+++| +..++.+++.|+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~--l~~~~~~~~~~fv~~~g~ 396 (397)
T TIGR00814 319 GKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPA--LKKYRGRISNVFVTVIGL 396 (397)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHH--HHHhCCCcchheeEeeec
Confidence 1 11121 333444566788888899999999888888899999999988777643 23333 245666666554
No 16
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.85 E-value=4.6e-19 Score=170.29 Aligned_cols=336 Identities=15% Similarity=0.169 Sum_probs=238.6
Q ss_pred CCCChHHHHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhHHH
Q 043105 36 PLSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGFV 115 (426)
Q Consensus 36 ~~~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~ 115 (426)
++.|.+|..+.+.++++|+|++.+|....+.+...+++..++.+.........+.+..++.+++ +..|..++
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~--------~~~~~~~~ 72 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK--------NFSEILSK 72 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC--------CHHHHHHH
Confidence 4689999999999999999999999988776667788999999999999999999998887433 89999999
Q ss_pred HhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 043105 116 VCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFADV 195 (426)
Q Consensus 116 ~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 195 (426)
.+||+.+.+..+.+..+....+.......+|.++..+.. +...+...++..+..-....++++..++++.+...
T Consensus 73 ~~Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~ 146 (359)
T TIGR00912 73 YLGKILGRLLSILFILYFFLIAAYLIRIFADFIKTYLLP------RTPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLI 146 (359)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 999999999999988888887777777788887765422 11234443444444445667899999999988776
Q ss_pred HHHHHh-hhhhhhhhhhhccCCccccccCChhhHHHHHH-HHHhhhccceeeccchhhccccccchhhHHHHHHHHHHHH
Q 043105 196 VDLAAT-AVVMVDEVVISLKQMPEVAAFGNLSVFFYGIG-VAVYAFEGIGMVLPLEAEMEKKEKFGGILGLSVTFIALMY 273 (426)
Q Consensus 196 ~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~~~Y 273 (426)
..+... ...........+..+-......++.++..+.. ...++|.+.+.+....+++|||||.+|+...+..++.++|
T Consensus 147 ~~i~~~~~il~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~~~~~~~~~~ly 226 (359)
T TIGR00912 147 IFLILFILVLILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSIIKAIIIGVLLY 226 (359)
T ss_pred HHHHHHHHHHHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHH
Confidence 665552 32322222211111111111224556666654 7889999999999999999999999999999999999999
Q ss_pred HHHHhHhhhhcCCccccch-------h--cccCC--chHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcCCcchhHHH
Q 043105 274 VGFGVLGYFAFGSETKDII-------T--ANLGA--GFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGGEYCLWLR 342 (426)
Q Consensus 274 ~~~g~~gy~~fg~~~~~~i-------~--~~~~~--~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~ 342 (426)
....+.....+|.+..++. . .+.+. ++...+....+....+.+..+..+.....+.+.++.++++...
T Consensus 227 ~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~- 305 (359)
T TIGR00912 227 ILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRKYSILI- 305 (359)
T ss_pred HHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhH-
Confidence 9999999999997654332 1 11131 3555666778888999999999999999999999887754332
Q ss_pred HHHHHHHHHHHhhcCC-ccch---hhhhchhhhhhhHhHHHHHHHHHHhc
Q 043105 343 WLLVFLVSLVAMSVPN-FADF---LSLVGSSVCCGLGFVLPALFHLLVFK 388 (426)
Q Consensus 343 ~~~~~~~~~~a~~~~~-~~~i---~~~~G~~~~~~~~~ilP~l~~l~~~~ 388 (426)
.....+.+.++. .|| .... .+..+ ..+....+++|.++.+....
T Consensus 306 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~P~ll~~i~~i 353 (359)
T TIGR00912 306 LPVLMVIFSISF-FPDSSNQLFDYLEFLP-IIAIVFFLLLPLILFIIVKI 353 (359)
T ss_pred HHHHHHHHHHHH-ccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 222222333333 454 3322 12222 23356777889987776653
No 17
>PRK10655 potE putrescine transporter; Provisional
Probab=99.82 E-value=8.4e-17 Score=158.75 Aligned_cols=240 Identities=9% Similarity=-0.022 Sum_probs=165.5
Q ss_pred CCCCCChHHHHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhH
Q 043105 34 PAPLSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLG 113 (426)
Q Consensus 34 ~~~~~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~ 113 (426)
++|+.+.++.+...+++++|+|++.+|..+.+.|. .+++..++.++........+.|...+.+ +.....+..
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P-------~~GG~y~y~ 75 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSR-------KSGGMGGYA 75 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCC-------CCCchHHHH
Confidence 46789999999999999999999999988888776 5677888888888888888888776653 444556668
Q ss_pred HHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 043105 114 FVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFA 193 (426)
Q Consensus 114 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 193 (426)
++.+||+.+++..+.+++.......++.....+++..+++... .....+...+..+...-....++.+...+++.+.
T Consensus 76 ~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~---~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~ 152 (438)
T PRK10655 76 EYAFGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGATL---SPVQICLATIGVLWLCTVANFGGARITGQISSVT 152 (438)
T ss_pred HHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---chHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9999999999999998877766666655556677766665321 0111222222222333344566777777777665
Q ss_pred HHHHHHHhhhhhhhhhhhhcc-CCc---cccccCChhhHHHHHHHHHhhhccceeeccchhhcccc-ccchhhHHHHHHH
Q 043105 194 DVVDLAATAVVMVDEVVISLK-QMP---EVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKK-EKFGGILGLSVTF 268 (426)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~~~~~ 268 (426)
....+..++.+.......... ... +....+.+.++..++....|+|.|.+......+|+||| |+++|++..+..+
T Consensus 153 ~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~ 232 (438)
T PRK10655 153 VWGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLG 232 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHH
Confidence 554444333332221111111 111 01111123567777888999999999999999999999 5699999999999
Q ss_pred HHHHHHHHHhHhhhhc
Q 043105 269 IALMYVGFGVLGYFAF 284 (426)
Q Consensus 269 ~~~~Y~~~g~~gy~~f 284 (426)
+.++|.+.........
T Consensus 233 ~~~~Y~l~~~~~~~~~ 248 (438)
T PRK10655 233 AAVIYIVSTNVIAGIV 248 (438)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999998766554433
No 18
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.81 E-value=1.2e-16 Score=157.28 Aligned_cols=241 Identities=10% Similarity=-0.047 Sum_probs=167.2
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhh
Q 043105 33 KPAPLSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDL 112 (426)
Q Consensus 33 ~~~~~~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l 112 (426)
+++|+.+.++.+...++++||+|++.+|...++.|.. .+...+++++........+.|...+.| +.....+.
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P-------~~GG~y~y 73 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNP-------QQGGPIAY 73 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCC-------CCCChhHH
Confidence 4578999999999999999999999999999887764 566677777777777777777777764 33455555
Q ss_pred HHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 043105 113 GFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIF 192 (426)
Q Consensus 113 ~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 192 (426)
+++ +|++.++...+.++........++.....+++..+++...++ .......+......-+...++.|..++++.+
T Consensus 74 ~~~-~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~---~~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i 149 (435)
T PRK10435 74 AGE-ISPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDP---IPAGIACIAIVWVFTFVNMLGGTWVSRLTTI 149 (435)
T ss_pred HHH-HCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCh---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 778 899999999998887665556666666667777766543211 1111212222223344566777888777776
Q ss_pred HHHHHHHHhhhhhhhhhhhhccC----CccccccCChhhHHHHHHHHHhhhccceeeccchhhcccc-ccchhhHHHHHH
Q 043105 193 ADVVDLAATAVVMVDEVVISLKQ----MPEVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKK-EKFGGILGLSVT 267 (426)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~~~~ 267 (426)
..+..+..+...........+++ +.+....++..++..++....|+|.|.+.+....+|+||| |+++|++..+..
T Consensus 150 ~~~~~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~ 229 (435)
T PRK10435 150 GLVLVLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTG 229 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHH
Confidence 66554443332222221111110 0011112346788899999999999999999999999999 569999999999
Q ss_pred HHHHHHHHHHhHhhhhcC
Q 043105 268 FIALMYVGFGVLGYFAFG 285 (426)
Q Consensus 268 ~~~~~Y~~~g~~gy~~fg 285 (426)
++.++|.+..+......+
T Consensus 230 iv~ilYil~~~~~~~~~p 247 (435)
T PRK10435 230 LAGIIYIAATQVISGMFP 247 (435)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999998877665544
No 19
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.81 E-value=3.7e-18 Score=162.33 Aligned_cols=355 Identities=11% Similarity=0.102 Sum_probs=243.4
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhHHHhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchh
Q 043105 33 KPAPLSSQTKTFANVFIAIVGAGVLGLPYAFKRTG--WLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFG 110 (426)
Q Consensus 33 ~~~~~~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G--~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~ 110 (426)
+.+|+.+.+.+++.+++++||+|++..|..+.+.+ ...+++..++.++++...+.+.+|.....+++ .++..|
T Consensus 9 ~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipks----Ggd~ay- 83 (479)
T KOG1287|consen 9 QLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKS----GGDYAY- 83 (479)
T ss_pred cccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCC----Ccchhh-
Confidence 45789999999999999999999999999876544 33466777888889999999888888777542 444444
Q ss_pred hhHHHHhcccchhHHHHHHHHHhhhhH-HHHHHHHHHh-HHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhH
Q 043105 111 DLGFVVCGSIGRGIVDVLIILSQAGFC-ISYLMFIANT-LVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAP 188 (426)
Q Consensus 111 ~l~~~~~G~~~~~i~~~~~~~~~~g~~-~~y~i~~~~~-l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 188 (426)
..++||+..++...+.-.+...... ..+.+.++++ +++.++... +...... .+...++.++-+...-++|.-++
T Consensus 84 --i~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~-~p~~~~~-lla~~~l~~lt~~n~~~V~~a~~ 159 (479)
T KOG1287|consen 84 --ISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCD-VPRVASK-LLAAALLVLLTLINSFSVKWATR 159 (479)
T ss_pred --HHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCC-CchHHHH-HHHHHHHHHHHHHhhhhhhHHHH
Confidence 6788999988877776655555444 8888899998 888888422 2111122 22234444445556667888888
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhh---ccCCcc----ccccCChhhHHHHHHHHHhhhccceeeccchhhcccc-ccchh
Q 043105 189 LSIFADVVDLAATAVVMVDEVVIS---LKQMPE----VAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKK-EKFGG 260 (426)
Q Consensus 189 ~s~~~~~~~~~~~~~~i~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~ 260 (426)
++.+.+.+.+..+.+++.-+.... ..++.+ ...-.+..++..++-...|||.|+..+-.+.+|+||| |.+||
T Consensus 160 vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktLP~ 239 (479)
T KOG1287|consen 160 VQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPR 239 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccccchH
Confidence 888888888888777766554432 111111 1111256688899999999999999999999999999 55999
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhhcCCccc--cch-hcccCC---chHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcC
Q 043105 261 ILGLSVTFIALMYVGFGVLGYFAFGSETK--DII-TANLGA---GFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKG 334 (426)
Q Consensus 261 ~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~--~~i-~~~~~~---~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~ 334 (426)
++.+++.++++.|+++-+..+.+...+.. ++. -..+.+ .....+.-+...++.+.+.-..++...+.+...-++
T Consensus 240 Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~~~ip~~ValS~~G~~n~~ifs~SR~~~~~are 319 (479)
T KOG1287|consen 240 AILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFAWAIPFSVALSLIGSLNSVIFSSSRLFYAGARE 319 (479)
T ss_pred HHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHc
Confidence 99999999999999998887776554322 111 111211 112244455556666666555555544444333222
Q ss_pred ------------CcchhHHHHHHHHHHHHHHhhcCCccchhhhhchhhhhhhHhHHHHHHHHHHhccccchHHH
Q 043105 335 ------------GEYCLWLRWLLVFLVSLVAMSVPNFADFLSLVGSSVCCGLGFVLPALFHLLVFKEEMGWKGW 396 (426)
Q Consensus 335 ------------~~~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~~~~~~~~~ 396 (426)
++...+...+......++..+.+|+++++++.+-.-.......+-+++++|.++++.++.-|
T Consensus 320 G~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rPiK 393 (479)
T KOG1287|consen 320 GHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRPIK 393 (479)
T ss_pred cCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCEe
Confidence 11122334445555566666678999999999988888888888999999999876554434
No 20
>PRK11021 putative transporter; Provisional
Probab=99.80 E-value=5.3e-16 Score=151.68 Aligned_cols=337 Identities=15% Similarity=0.087 Sum_probs=200.5
Q ss_pred CChHHHHHHHHHHhhhhhhchhhHHHh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhHHHH
Q 043105 38 SSQTKTFANVFIAIVGAGVLGLPYAFK-RTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGFVV 116 (426)
Q Consensus 38 ~s~~~~~~~l~~s~iG~Gil~lP~~~~-~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~ 116 (426)
.+.+++....+++|||+|++.+|.... .+|. ..++..++.++........+.|...+.+ +.......+++.
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P-------~aGG~y~y~~~~ 72 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFP-------HAGGPAHFVGMA 72 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CCCCHHHhHHHH
Confidence 368999999999999999999997654 5554 5688888888888888888999888874 444556678999
Q ss_pred hcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 043105 117 CGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFADVV 196 (426)
Q Consensus 117 ~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 196 (426)
+||+.+++..+..++.......+.......++...++.. ....+...+...+.+-+...++.|..++++....+.
T Consensus 73 ~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~ 147 (410)
T PRK11021 73 FGPRLGRVTGWLFLSVIPVGLPAALQIAAGFGQALFGWS-----SWQLLLAELLTLALLWLLNLRGASSSANLQTVIALL 147 (410)
T ss_pred hCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCC-----CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999998876544444444444555666555432 111222222223333445667788888777765544
Q ss_pred HHHHhhhhhhhhhhhhcc-CCccccccCChhhHHHHHHHHHhhhccceeeccchhhcccc-ccchhhHHHHHHHHHHHHH
Q 043105 197 DLAATAVVMVDEVVISLK-QMPEVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKK-EKFGGILGLSVTFIALMYV 274 (426)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~~~~~~~~~Y~ 274 (426)
.+..+............+ +..+ ....++.++..++....|+|.|.+.+....+|+||| |+++|++..+..++.++|+
T Consensus 148 ~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYi 226 (410)
T PRK11021 148 IVALVVAIWWAGDIKPADIPFPA-PGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYW 226 (410)
T ss_pred HHHHHHHHHHHcCCchhcCCCCC-CCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHH
Confidence 333322222111111000 0111 111256788899999999999999999999999998 5699999999999999999
Q ss_pred HHHhHhh--hhcCCcccc-----chhcccCCchHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcCC------------
Q 043105 275 GFGVLGY--FAFGSETKD-----IITANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGG------------ 335 (426)
Q Consensus 275 ~~g~~gy--~~fg~~~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~------------ 335 (426)
+...... ..+++...+ .+.+..-.++...+..+...++.+.+....+....+.+...-+++
T Consensus 227 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k~~~~ 306 (410)
T PRK11021 227 ACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLARLSAR 306 (410)
T ss_pred HHHHHHHhcCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHhhccC
Confidence 8876532 222332111 111111111122233334444444444433333333433322211
Q ss_pred cchhH---HHHHHHHHHHHHH-hhcCCccchhhhhchhhhhhhHhHHHHHHHHHHhccc
Q 043105 336 EYCLW---LRWLLVFLVSLVA-MSVPNFADFLSLVGSSVCCGLGFVLPALFHLLVFKEE 390 (426)
Q Consensus 336 ~~~~~---~~~~~~~~~~~~a-~~~~~~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~~~ 390 (426)
+.+.. ....+.....++. ....+++.+.+... ....+.|.++.+-.++++|++
T Consensus 307 ~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~--~~~li~y~~~~~a~~~l~~~~ 363 (410)
T PRK11021 307 GVPVNALNAVLGCCAVSILLIYALGLNLEALIAYAN--GIFVLIYLLCMLAACKLLKGR 363 (410)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHHHHHHhccc
Confidence 11111 1111111111111 12356777777744 445688888888888877653
No 21
>TIGR00909 2A0306 amino acid transporter.
Probab=99.80 E-value=7.5e-17 Score=158.83 Aligned_cols=343 Identities=10% Similarity=0.018 Sum_probs=218.9
Q ss_pred CCCCChHHHHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhHH
Q 043105 35 APLSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGF 114 (426)
Q Consensus 35 ~~~~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~~ 114 (426)
+|+.+.++.+...+++++|+|++.+|......+....++..++.++........+.|..++.+ +..+..+..+
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p-------~~Gg~y~~~~ 74 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAMLP-------VAGSPYTYAY 74 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------CCCcceeeHH
Confidence 578999999999999999999999997655433334567777788888888888888887764 3345556689
Q ss_pred HHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccc---cCCCc------hhHHHHHHHHHHHHHhhhhhhhhh
Q 043105 115 VVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTST---ILGMS------AKGFYIWSCLPFQLGLNSIATLTH 185 (426)
Q Consensus 115 ~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~---~~~~~------~~~~~~~i~~~~~~pl~~~~~l~~ 185 (426)
+.+||+.+++..+.+++........+....++++..+++... +.... .......+...++.-....++.|.
T Consensus 75 ~~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~ 154 (429)
T TIGR00909 75 EAMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKE 154 (429)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHH
Confidence 999999999999999998888888888888999888876321 10000 000011233333344456678888
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhhc-cCCccccccCChhhHHHHHHHHHhhhccceeeccchhhcccc-ccchhhHH
Q 043105 186 LAPLSIFADVVDLAATAVVMVDEVVISL-KQMPEVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKK-EKFGGILG 263 (426)
Q Consensus 186 l~~~s~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~ 263 (426)
..+++.+.....+..++..+.......+ .+..+. ...+..++..++....|+|.|.+......+|+||| |+.+|++.
T Consensus 155 ~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~ 233 (429)
T TIGR00909 155 SGKVNDILVVLKVAALLLFAALGAIHFASNNYTPF-MPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAII 233 (429)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCC-CCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHH
Confidence 8888887776666555433322222111 111111 11245678888999999999999999999999998 56899999
Q ss_pred HHHHHHHHHHHHHHhHhhhhcCCccc-------cchhcccCCchHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcCCc
Q 043105 264 LSVTFIALMYVGFGVLGYFAFGSETK-------DIITANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGGE 336 (426)
Q Consensus 264 ~~~~~~~~~Y~~~g~~gy~~fg~~~~-------~~i~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~ 336 (426)
.+..++.++|.+.........+.+.. ..+..+...++...+..+...++.+.+....+....+.+...-+++.
T Consensus 234 ~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~ 313 (429)
T TIGR00909 234 LSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGL 313 (429)
T ss_pred HHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999887666544332211 11122223345555566666677766665555555555544332211
Q ss_pred c-----------hhHHHHH-H-HHHHHHHHhhcCCccchhhhhchhhhhhhHhHHHHHHHHHHhc
Q 043105 337 Y-----------CLWLRWL-L-VFLVSLVAMSVPNFADFLSLVGSSVCCGLGFVLPALFHLLVFK 388 (426)
Q Consensus 337 ~-----------~~~~~~~-~-~~~~~~~a~~~~~~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~ 388 (426)
. ..-.+.. + ..++.++ ....+++.+.++.+ ....+.|++.++-.++.+|
T Consensus 314 lP~~~~~~~~~~~~P~~a~~~~~~i~~~~-~~~~~~~~l~~~~~--~~~~~~y~~~~~a~~~lr~ 375 (429)
T TIGR00909 314 LPGSLSKVHPKTGTPHMSIIIFSLTAALL-ASLVPLEGLAELTS--IGTLIAFAAVNVAVIILRR 375 (429)
T ss_pred CcHHHHHcCCCCCCcHHHHHHHHHHHHHH-HHHcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 0 0001212 1 1222222 22355777776643 3445777777666666654
No 22
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.80 E-value=2.2e-16 Score=156.88 Aligned_cols=345 Identities=15% Similarity=0.071 Sum_probs=212.9
Q ss_pred CCCChHHHHHHHHHHhhhhhhchhhHHHh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhHH
Q 043105 36 PLSSQTKTFANVFIAIVGAGVLGLPYAFK-RTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGF 114 (426)
Q Consensus 36 ~~~s~~~~~~~l~~s~iG~Gil~lP~~~~-~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~~ 114 (426)
|+.+.++.+...++++||+|++.+|.... .+|....++..++.++........+.|...+.++. .....+.++
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~------gGG~y~y~~ 74 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPEL------DGGVYSYAK 74 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC------CCChhhhHH
Confidence 57899999999999999999999998755 45544345567777777777777777877776421 114555699
Q ss_pred HHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 043105 115 VVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFAD 194 (426)
Q Consensus 115 ~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 194 (426)
+.+||+.+++..+.+++.......++.....+.+..+++.... ......+...+.....+.....++.|..++++.+..
T Consensus 75 ~~fG~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~ 153 (468)
T TIGR03810 75 AGFGPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGG-GNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITT 153 (468)
T ss_pred hHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 9999999999999998877666677776666666666554321 111112222222333344445678888888887776
Q ss_pred HHHHHHhhhhhhhhh---hhh--ccC-Ccc----ccccCChhhHHHHHHHHHhhhccceeeccchhhccccccchhhHHH
Q 043105 195 VVDLAATAVVMVDEV---VIS--LKQ-MPE----VAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKEKFGGILGL 264 (426)
Q Consensus 195 ~~~~~~~~~~i~~~~---~~~--~~~-~~~----~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~ 264 (426)
...+..+...+.... ... ..+ ..+ ....+.+.++..++....|+|.|.+......+|.||||+++|++..
T Consensus 154 ~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip~ai~~ 233 (468)
T TIGR03810 154 IAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGKATVI 233 (468)
T ss_pred HHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCcccchHHHHH
Confidence 655443332222111 110 000 000 0011124466678889999999999999999999998899999999
Q ss_pred HHHHHHHHHHHHHhHhhhhcCCcccc--------chhcccCCchHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcCC-
Q 043105 265 SVTFIALMYVGFGVLGYFAFGSETKD--------IITANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGG- 335 (426)
Q Consensus 265 ~~~~~~~~Y~~~g~~gy~~fg~~~~~--------~i~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~- 335 (426)
+...+.++|.++.+..+...+++..+ ...++...++...+..++..++.+.+....+....+.....-+++
T Consensus 234 ~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~ 313 (468)
T TIGR03810 234 GLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKL 313 (468)
T ss_pred HHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999888776655432211 112222223445566666677776666655554444443332211
Q ss_pred -----------cchhH---HHHHHHHHHHHHHhhc-CCccchhhhhchhhhhhhHhHHHHHHHHHHhcc
Q 043105 336 -----------EYCLW---LRWLLVFLVSLVAMSV-PNFADFLSLVGSSVCCGLGFVLPALFHLLVFKE 389 (426)
Q Consensus 336 -----------~~~~~---~~~~~~~~~~~~a~~~-~~~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~~ 389 (426)
+.+.. ....+..+..++.... +.++.+.++.+ ....+.|+++++.+++.++|
T Consensus 314 lP~~f~k~~~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~--~~~li~y~~~~~~~~~l~~~ 380 (468)
T TIGR03810 314 MPKYFGKENANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLAT--SAILVPYLWSAAYQVKLSWR 380 (468)
T ss_pred ccHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh
Confidence 11111 1111111111111111 33666666643 45678999999999988754
No 23
>PRK10249 phenylalanine transporter; Provisional
Probab=99.79 E-value=2e-16 Score=156.52 Aligned_cols=339 Identities=13% Similarity=0.076 Sum_probs=208.7
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhHH-HhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhh
Q 043105 33 KPAPLSSQTKTFANVFIAIVGAGVLGLPYA-FKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGD 111 (426)
Q Consensus 33 ~~~~~~s~~~~~~~l~~s~iG~Gil~lP~~-~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~ 111 (426)
+.+|+.+.++.....++.+||+|++..|.. .++.|. ..++..++.+++.......+.|...+.+ ......+
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P-------~~Gg~~~ 89 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEP-------VSGSFAH 89 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CCCCHHH
Confidence 356889999999999999999999998865 455565 5778888899999999999999888874 4556677
Q ss_pred hHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 043105 112 LGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSI 191 (426)
Q Consensus 112 l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 191 (426)
.+++.+|++.+++..+.+++.......+.....+.+++.++++. . .+...+...++.-.....+.|..++++.
T Consensus 90 y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~-----~--~~~~~~~~~~l~~~lN~~gv~~~~~i~~ 162 (458)
T PRK10249 90 FAYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDV-----P--TWIWAAAFFIIINAVNLVNVRLYGETEF 162 (458)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC-----c--HHHHHHHHHHHHHHHHHhcchhhhhHHH
Confidence 79999999999999999988876666666666777776665432 1 2222222333334455667777777665
Q ss_pred HHHHHHHHHhhhhhh-------hhhhhhccCCcc---cc--ccCChhhHHHHHHHHHhhhccceeeccchhhccccc-cc
Q 043105 192 FADVVDLAATAVVMV-------DEVVISLKQMPE---VA--AFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKE-KF 258 (426)
Q Consensus 192 ~~~~~~~~~~~~~i~-------~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~ 258 (426)
......+..++..+. ........+..+ .. ..+++.++..++....|+|.|.+.+....+|+|||+ +.
T Consensus 163 ~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~i 242 (458)
T PRK10249 163 WFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSI 242 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHH
Confidence 554333322221111 110000000000 00 113466788999999999999999999999999985 59
Q ss_pred hhhHHHHHHHHHHHHHHHHhHhhhhcCCcccc----c---hhcccCCchHHHHHHHHHHHHHHhhhccchhhHHHHHHHh
Q 043105 259 GGILGLSVTFIALMYVGFGVLGYFAFGSETKD----I---ITANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERR 331 (426)
Q Consensus 259 ~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~----~---i~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~ 331 (426)
+|++..+...+.++|...........+++..+ . +..+...++..........+..+.+..-.++...+.+...
T Consensus 243 Prai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~ 322 (458)
T PRK10249 243 PKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSRMLFGL 322 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987655544444332211 1 1112222334444455555555555544444444444333
Q ss_pred hcCCc------------chhH---HHHHHHHHHHHHHhhcCC--ccchhhhhchhhhhhhHhHHHHHHHHHHhc
Q 043105 332 FKGGE------------YCLW---LRWLLVFLVSLVAMSVPN--FADFLSLVGSSVCCGLGFVLPALFHLLVFK 388 (426)
Q Consensus 332 ~~~~~------------~~~~---~~~~~~~~~~~~a~~~~~--~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~ 388 (426)
-+++. .+.. ....+..+..++....|+ ++.+.+.. .....+.|++|++.+++.+|
T Consensus 323 ardg~lP~~~~kv~~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~--~~~~~i~y~~~~~~~l~~r~ 394 (458)
T PRK10249 323 SVQGNAPKFLTRVSRRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALV--VATLLLNWIMICLAHLRFRA 394 (458)
T ss_pred hcCCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 22211 1111 111111111112122232 44555553 33567999999999999874
No 24
>PRK15049 L-asparagine permease; Provisional
Probab=99.79 E-value=5.1e-16 Score=154.83 Aligned_cols=340 Identities=13% Similarity=0.093 Sum_probs=207.6
Q ss_pred CCCCCChHHHHHHHHHHhhhhhhchhhH-HHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhh
Q 043105 34 PAPLSSQTKTFANVFIAIVGAGVLGLPY-AFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDL 112 (426)
Q Consensus 34 ~~~~~s~~~~~~~l~~s~iG~Gil~lP~-~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l 112 (426)
.+|+.+.++.....++.+||+|++..|. +.+..|. .+++..++++++....+..+.|..... |......+.
T Consensus 26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~-------P~aGg~y~y 97 (499)
T PRK15049 26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHR-------PSSGSFVSY 97 (499)
T ss_pred hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCCHHHH
Confidence 5788999999999999999999999887 5666675 557788888888888888888888876 455577777
Q ss_pred HHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 043105 113 GFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIF 192 (426)
Q Consensus 113 ~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 192 (426)
+++.+|++.++++.+.+++.............+.+...+ +... ....|...+...++.-.....+.|...+++..
T Consensus 98 ~~~~~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~~----~~~~~~~~~~~~~l~~~iN~~gvk~~~~i~~~ 172 (499)
T PRK15049 98 AREFLGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GAFG----GVPQWVFALAALTIVGTMNMIGVKWFAEMEFW 172 (499)
T ss_pred HHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCC----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998865544444343444444322 1111 11233333333333444566777777777766
Q ss_pred HHHHHHHHhhhhhhhhh---h--hhc-cC---C---cc-cc-ccCChhhHHHHHHHHHhhhccceeeccchhhccccc-c
Q 043105 193 ADVVDLAATAVVMVDEV---V--ISL-KQ---M---PE-VA-AFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKE-K 257 (426)
Q Consensus 193 ~~~~~~~~~~~~i~~~~---~--~~~-~~---~---~~-~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~ 257 (426)
.....+..++..+.... . ... .. . .+ .. .++++.....++....|+|.|.+.+....+|.|||+ +
T Consensus 173 ~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~ 252 (499)
T PRK15049 173 FALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTM 252 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhH
Confidence 55444333222211111 0 000 00 0 00 00 111234455667789999999999999999999995 5
Q ss_pred chhhHHHHHHHHHHHHHHHHhHhhhhcCCccc----cc---hhcccCCchHHHHHHHHHHHHHHhhhccchhhHHHHHHH
Q 043105 258 FGGILGLSVTFIALMYVGFGVLGYFAFGSETK----DI---ITANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVER 330 (426)
Q Consensus 258 ~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~----~~---i~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~ 330 (426)
++|++..++..+.++|+..........+.+.. +. +.......+...+.++...+..+.+..-.++...+.+..
T Consensus 253 iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a 332 (499)
T PRK15049 253 VPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRS 332 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999876655544442211 11 112222233445556666666666665555555555544
Q ss_pred hhcCCc------------chhH---HHHHHHHHHHHHHhhcCC--ccchhhhhchhhhhhhHhHHHHHHHHHHhc
Q 043105 331 RFKGGE------------YCLW---LRWLLVFLVSLVAMSVPN--FADFLSLVGSSVCCGLGFVLPALFHLLVFK 388 (426)
Q Consensus 331 ~~~~~~------------~~~~---~~~~~~~~~~~~a~~~~~--~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~ 388 (426)
.-+++. .+.. ...++..+..++....|+ ++.++++. .....+.|++|.+.+++.+|
T Consensus 333 ~Ardg~lP~~f~kv~k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~--~~~~li~y~~~~~~~l~~R~ 405 (499)
T PRK15049 333 MAMGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFA--SLGIIASWAFIIVCQMRLRK 405 (499)
T ss_pred HHhcCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 433211 1111 111111111122222232 56667764 45678999999999998875
No 25
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.79 E-value=5.1e-16 Score=154.42 Aligned_cols=347 Identities=14% Similarity=0.083 Sum_probs=210.5
Q ss_pred CCCCChHHHHHHHHHHhhhhhhchhhHHHhccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhH
Q 043105 35 APLSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWL-MGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLG 113 (426)
Q Consensus 35 ~~~~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G~~-~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~ 113 (426)
+|+.+.+++.+..+++++|+|++.+|....+.|.. ..++..++.++........+.|...+.+++ .....+..
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~------sGG~y~y~ 79 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPEL------DGGIYAYA 79 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC------CCChhhhH
Confidence 67899999999999999999999999987755533 345667777787888888888888777430 34455568
Q ss_pred HHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 043105 114 FVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFA 193 (426)
Q Consensus 114 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 193 (426)
++.+||+.+++..+.+++.......++.....+++..+++.... ......+...+...++.-....++.|..++++.+.
T Consensus 80 ~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~-~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~ 158 (473)
T TIGR00905 80 REGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGS-GNPVPSILGASVLLWVFTFLVLRGVRQAAFINTIT 158 (473)
T ss_pred HhHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 99999999999999998877766777777777777777663211 11112222223333334455677888888888877
Q ss_pred HHHHHHHhhhhhhhhhh---hh--ccCC-cc-ccc-cCChhhHHHHHHHHHhhhccceeeccchhhccccccchhhHHHH
Q 043105 194 DVVDLAATAVVMVDEVV---IS--LKQM-PE-VAA-FGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKEKFGGILGLS 265 (426)
Q Consensus 194 ~~~~~~~~~~~i~~~~~---~~--~~~~-~~-~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~ 265 (426)
....+..++.++..... .. ..+. ++ .+. .+.+..+..++....|+|.|.+......+|+||+|+.+|++..+
T Consensus 159 ~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~iPrai~~~ 238 (473)
T TIGR00905 159 TIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDVGKATVLG 238 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccchHHHHHH
Confidence 76655433332221111 10 0011 00 111 11345677788889999999999999999999966799999999
Q ss_pred HHHHHHHHHHHHhHhhhhcCCcccc----c----hhcccCCchHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhc----
Q 043105 266 VTFIALMYVGFGVLGYFAFGSETKD----I----ITANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFK---- 333 (426)
Q Consensus 266 ~~~~~~~Y~~~g~~gy~~fg~~~~~----~----i~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~---- 333 (426)
..++.++|++.........+.+... . +.+....++...+..++..++.+.+.-..+....+.+...-+
T Consensus 239 ~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amardg~l 318 (473)
T TIGR00905 239 TLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKDGLF 318 (473)
T ss_pred HHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 9999999998877655444432111 1 111111122333344444444444443333333333322221
Q ss_pred --------CCcchhHHHHHHHHHHH--HHHhhc--CCccchhhhhchhhhhhhHhHHHHHHHHHHhccc
Q 043105 334 --------GGEYCLWLRWLLVFLVS--LVAMSV--PNFADFLSLVGSSVCCGLGFVLPALFHLLVFKEE 390 (426)
Q Consensus 334 --------~~~~~~~~~~~~~~~~~--~~a~~~--~~~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~~~ 390 (426)
+++.+...-+....++. .+.... .+++.+.++. .....+.|.++.+-.++.++++
T Consensus 319 P~~~~~v~~~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~i~y~~~~~a~~~lr~~~ 385 (473)
T TIGR00905 319 PKIFGRVNKNGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLA--VVMILVPYLLSAAYLLKLAKVG 385 (473)
T ss_pred hHHHHhhCccCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcC
Confidence 11111111111111111 111112 3466666664 3456788888998888887643
No 26
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.78 E-value=1.5e-15 Score=149.98 Aligned_cols=243 Identities=14% Similarity=0.026 Sum_probs=163.6
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhh
Q 043105 33 KPAPLSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDL 112 (426)
Q Consensus 33 ~~~~~~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l 112 (426)
+++|+.+.++.+...+++++|+|++.+|....+.|.. .+...++.++........+.|.....+ +.....+.
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~-~~~~~~i~~~~~l~~al~~aEL~s~~P-------~aGG~y~~ 76 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSSLDP-------SPGGSYAY 76 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCC-------CCCChhHH
Confidence 3578899999999999999999999999988877653 455666667777777777788777764 33344455
Q ss_pred HHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 043105 113 GFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIF 192 (426)
Q Consensus 113 ~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 192 (426)
+++.+||+.+++..+..++.......+......++...+++.... ........+...+.+-.....+.|...+++.+
T Consensus 77 ~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i 153 (445)
T PRK10644 77 ARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKD---PLVLTITCVVVLWIFVLLNIVGPKMITRVQAV 153 (445)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 999999999999999888776655555555555666655553211 11111112222223334455667777777776
Q ss_pred HHHHHHHHhhhhhhhhhhhhcc-CC-c--cccccCChhhHHHHHHHHHhhhccceeeccchhhcccc-ccchhhHHHHHH
Q 043105 193 ADVVDLAATAVVMVDEVVISLK-QM-P--EVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKK-EKFGGILGLSVT 267 (426)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~-~~-~--~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~~~~ 267 (426)
.+...+..+...+......... .. . +....+++..+..++....|+|.|.+......+|+||| |+.+|++..+..
T Consensus 154 ~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~ 233 (445)
T PRK10644 154 ATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVL 233 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHH
Confidence 6655544333332222111111 00 0 11111234566778888999999999999999999999 569999999999
Q ss_pred HHHHHHHHHHhHhhhhcCC
Q 043105 268 FIALMYVGFGVLGYFAFGS 286 (426)
Q Consensus 268 ~~~~~Y~~~g~~gy~~fg~ 286 (426)
++.++|.+..+......++
T Consensus 234 i~~v~Y~l~~~~~~~~~~~ 252 (445)
T PRK10644 234 IAAVCYVLSSTAIMGMIPN 252 (445)
T ss_pred HHHHHHHHHHHHHHhCCCH
Confidence 9999999988776554443
No 27
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.78 E-value=8.4e-16 Score=152.81 Aligned_cols=284 Identities=9% Similarity=0.013 Sum_probs=179.7
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhHH-HhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhh
Q 043105 33 KPAPLSSQTKTFANVFIAIVGAGVLGLPYA-FKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGD 111 (426)
Q Consensus 33 ~~~~~~s~~~~~~~l~~s~iG~Gil~lP~~-~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~ 111 (426)
+.+|+.+.++.....++++||+|++..|.. .+..|....++..++.+++.......+.|...+.+ +...+.+
T Consensus 11 ~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P-------~aGG~y~ 83 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMP-------ETGAFHV 83 (471)
T ss_pred hhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCCHHH
Confidence 357889999999999999999999988866 45667544577788888889999999999888874 4445667
Q ss_pred hHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 043105 112 LGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSI 191 (426)
Q Consensus 112 l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 191 (426)
.+++.+|++.+++..+.+++.....+.......+..++.+.+.. ..+...+...+++-.....+.|...+++.
T Consensus 84 y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~~~~~~~~~~in~~gvk~~~~~~~ 156 (471)
T PRK11387 84 YAARYLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQV-------PVWPWCLLFCALIFGLNVVSTRFFAEGEF 156 (471)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcC-------cHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 79999999999999999988776666555555555555444321 12221122222233445566666666554
Q ss_pred HHHHHHHHHhhhhhhhhh-------hhhcc---C-Ccc---ccc-cCChhhHHHHHHHHHhhhccceeeccchhhccccc
Q 043105 192 FADVVDLAATAVVMVDEV-------VISLK---Q-MPE---VAA-FGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKE 256 (426)
Q Consensus 192 ~~~~~~~~~~~~~i~~~~-------~~~~~---~-~~~---~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~ 256 (426)
......+..++..+.... ..... + ..+ ..+ ..+..++..++....|+|.|.+.+....+|+|||+
T Consensus 157 ~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~ 236 (471)
T PRK11387 157 WFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPA 236 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChh
Confidence 444333332221111110 00000 0 000 111 11234577788889999999999999999999995
Q ss_pred -cchhhHHHHHHHHHHHHHHHHhHhhhhcCCcccc-------chhcccCCchHHHHHHHHHHHHHHhhhccchhhHHHHH
Q 043105 257 -KFGGILGLSVTFIALMYVGFGVLGYFAFGSETKD-------IITANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIV 328 (426)
Q Consensus 257 -~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~-------~i~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~ 328 (426)
+++|++..+..++.++|+...+......+.+..+ ...++...++...+..++..++.+.+.--.+....+.+
T Consensus 237 r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l 316 (471)
T PRK11387 237 KVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYASGRML 316 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 5999999999999999998876655444422111 11222333444455555556666555544444444444
Q ss_pred HH
Q 043105 329 ER 330 (426)
Q Consensus 329 ~~ 330 (426)
..
T Consensus 317 ~a 318 (471)
T PRK11387 317 WS 318 (471)
T ss_pred HH
Confidence 33
No 28
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.77 E-value=9.3e-16 Score=154.49 Aligned_cols=345 Identities=12% Similarity=0.074 Sum_probs=223.4
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhHHH--hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchh
Q 043105 33 KPAPLSSQTKTFANVFIAIVGAGVLGLPYAF--KRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFG 110 (426)
Q Consensus 33 ~~~~~~s~~~~~~~l~~s~iG~Gil~lP~~~--~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~ 110 (426)
+.+|+.+.++.+...+++++|+|++.+|... ...|.. .++..+++++.+...+..+.|...+.++. .+.+.|
T Consensus 25 ~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~s----Gg~Y~y- 98 (557)
T TIGR00906 25 KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKA----GSAYLY- 98 (557)
T ss_pred chhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCC----Ccceee-
Confidence 4578899999999999999999999998653 346755 57778888888889999999988887542 344444
Q ss_pred hhHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhcc-c----------cCCCchhHHHHHHHHHHHHHhhh
Q 043105 111 DLGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTS-T----------ILGMSAKGFYIWSCLPFQLGLNS 179 (426)
Q Consensus 111 ~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~-~----------~~~~~~~~~~~~i~~~~~~pl~~ 179 (426)
+++.+|+..++++.+..++.......+.....+++++.++... . .++.........+..++++-...
T Consensus 99 --~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln 176 (557)
T TIGR00906 99 --SYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLL 176 (557)
T ss_pred --HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHH
Confidence 7889999999999999998877777777777777777665421 0 01111111222222333333456
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhhhhhhhhhhhc-cCCc-----ccccc--CChhhHHHHHHHHHhhhccceeeccchhh
Q 043105 180 IATLTHLAPLSIFADVVDLAATAVVMVDEVVISL-KQMP-----EVAAF--GNLSVFFYGIGVAVYAFEGIGMVLPLEAE 251 (426)
Q Consensus 180 ~~~l~~l~~~s~~~~~~~~~~~~~~i~~~~~~~~-~~~~-----~~~~~--~~~~~~~~~~~~~~faf~~~~~i~~i~~~ 251 (426)
..+.|..++++.+.....+..+.+++..+....+ .+.. +...+ .++.++..+.....|+|.|.+.+.+..+|
T Consensus 177 ~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE 256 (557)
T TIGR00906 177 SFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEE 256 (557)
T ss_pred HhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHh
Confidence 6788888888887777666655544443332211 1111 00011 13567888999999999999999999999
Q ss_pred ccccc-cchhhHHHHHHHHHHHHHHHHhHhhhhcCCcc---cc---chhcccCCchHHHHHHHHHHHHHHhhhccchhhH
Q 043105 252 MEKKE-KFGGILGLSVTFIALMYVGFGVLGYFAFGSET---KD---IITANLGAGFVSVLVQLGLCINLFFTFPLMMHPV 324 (426)
Q Consensus 252 m~~p~-~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~---~~---~i~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~ 324 (426)
.|||+ +++|++..+..+++++|.++.+.-....+.+. .+ ......+.++...+..++....++.+....+...
T Consensus 257 ~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~ 336 (557)
T TIGR00906 257 VKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPL 336 (557)
T ss_pred ccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99995 59999999999999999988766544433221 11 1222333345555666666666666655555555
Q ss_pred HHHHHHhhcCCc------------c-hhHHHHHHHHHHHHHHhhcCCccchhhhhchhhhhhhHhHHHHHHHHHHhc
Q 043105 325 YEIVERRFKGGE------------Y-CLWLRWLLVFLVSLVAMSVPNFADFLSLVGSSVCCGLGFVLPALFHLLVFK 388 (426)
Q Consensus 325 ~~~~~~~~~~~~------------~-~~~~~~~~~~~~~~~a~~~~~~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~ 388 (426)
.+.+...-+++. . +.........++.+++. +.+++.+.++.. .+..+.|.+++...+..++
T Consensus 337 sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~-~~~~~~l~~l~s--ig~ll~y~lv~~~~l~lR~ 410 (557)
T TIGR00906 337 PRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAF-LFDLKALVDLLS--IGTLLAYSLVAACVLILRY 410 (557)
T ss_pred HHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHH-HcCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc
Confidence 555544433211 1 11122222233334443 345777777643 4567889999888877774
No 29
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.76 E-value=1.6e-15 Score=150.15 Aligned_cols=284 Identities=12% Similarity=0.081 Sum_probs=187.7
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhh-HHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhh
Q 043105 33 KPAPLSSQTKTFANVFIAIVGAGVLGLP-YAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGD 111 (426)
Q Consensus 33 ~~~~~~s~~~~~~~l~~s~iG~Gil~lP-~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~ 111 (426)
+.+|+.+.++.....++++||+|++.+| .+.++.|. .+++..++.++........+.|...+.+ ......+
T Consensus 9 ~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P-------~~Gg~~~ 80 (452)
T TIGR01773 9 KLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANP-------DTGSFST 80 (452)
T ss_pred hHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCCHHH
Confidence 4689999999999999999999999999 45667775 4678888888888888888888887763 4456677
Q ss_pred hHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 043105 112 LGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSI 191 (426)
Q Consensus 112 l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 191 (426)
.+++.+||+.+++..+.+++.....+.......+..++.++++. ..+...+...++.-.....+.|...+++.
T Consensus 81 ~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~n~~gv~~~~~~~~ 153 (452)
T TIGR01773 81 YADDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPDI-------PLWLFSLILTIVLTLTNLYSVKSYGEFEF 153 (452)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC-------cHHHHHHHHHHHHHHHHHHhcchhhHHHH
Confidence 89999999999999999998888777777788888888776542 23333333333334445667777777766
Q ss_pred HHHHHHHHHhhhhhhhh------h-hhhc-cCCc---ccc--ccCChhhHHHHHHHHHhhhccceeeccchhhcccc-cc
Q 043105 192 FADVVDLAATAVVMVDE------V-VISL-KQMP---EVA--AFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKK-EK 257 (426)
Q Consensus 192 ~~~~~~~~~~~~~i~~~------~-~~~~-~~~~---~~~--~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~ 257 (426)
......+..+...+... . ...+ .+.. +.. .++++.++..++....|+|.|.+......+|+||| |+
T Consensus 154 ~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~ 233 (452)
T TIGR01773 154 WFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKS 233 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhH
Confidence 55544333222211111 0 0000 0000 001 11234578899999999999999999999999999 56
Q ss_pred chhhHHHHHHHHHHHHHHHHhHhhhhcCCcccc-----c---hhcccCCchHHHHHHHHHHHHHHhhhccchhhHHHHHH
Q 043105 258 FGGILGLSVTFIALMYVGFGVLGYFAFGSETKD-----I---ITANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVE 329 (426)
Q Consensus 258 ~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~-----~---i~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~ 329 (426)
.+|++..+...+.++|++...+.....+.+..+ . ..+.....+...+...+..+..+.+..-.+....+.+.
T Consensus 234 iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~sR~~~ 313 (452)
T TIGR01773 234 ITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTTSRMLY 313 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888889999998655554444322111 1 11222223334444455555555555444444444444
Q ss_pred Hh
Q 043105 330 RR 331 (426)
Q Consensus 330 ~~ 331 (426)
..
T Consensus 314 a~ 315 (452)
T TIGR01773 314 SL 315 (452)
T ss_pred HH
Confidence 33
No 30
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.76 E-value=2.8e-15 Score=148.26 Aligned_cols=340 Identities=10% Similarity=0.094 Sum_probs=209.3
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhHHH-hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhh
Q 043105 33 KPAPLSSQTKTFANVFIAIVGAGVLGLPYAF-KRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGD 111 (426)
Q Consensus 33 ~~~~~~s~~~~~~~l~~s~iG~Gil~lP~~~-~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~ 111 (426)
+.+|+.+.++.....++++||+|++..|... ++.|. ..++..++.++........+.|...+. |...++.+
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~-------P~aGg~y~ 80 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEE-------PVAGSFSH 80 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCCCHHH
Confidence 4689999999999999999999999998764 45564 567777888888888888888887776 45567777
Q ss_pred hHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 043105 112 LGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSI 191 (426)
Q Consensus 112 l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 191 (426)
.+++.+||..++++.+..++.....+.+.....+++++.+.++. ..|...+...++.-.....+.|....++.
T Consensus 81 ~~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~~i~~~~~~~lN~~gv~~~~~~~~ 153 (456)
T PRK10238 81 FAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEI-------PTWVSAAVFFVVINAINLTNVKVFGEMEF 153 (456)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC-------cHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 78999999999999999999988888888888888887776532 12222222223333345556677766666
Q ss_pred HHHHHHHHHhhhhhh------hhh-hhhccCCc---ccc-c-cCChhhHHHHHHHHHhhhccceeeccchhhccccc-cc
Q 043105 192 FADVVDLAATAVVMV------DEV-VISLKQMP---EVA-A-FGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKE-KF 258 (426)
Q Consensus 192 ~~~~~~~~~~~~~i~------~~~-~~~~~~~~---~~~-~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~ 258 (426)
......+..++.++. ... ........ +.. . .+.+.++..++....|+|.|.+......+|+|||+ ++
T Consensus 154 ~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~i 233 (456)
T PRK10238 154 WFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSI 233 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHH
Confidence 554444433222111 110 00000000 001 1 12345677788889999999999999999999995 59
Q ss_pred hhhHHHHHHHHHHHHHHHHhHhhhhcCCcc----cc---chhcccCCchHHHHHHHHHHHHHHhhhccchhhHHHHHHHh
Q 043105 259 GGILGLSVTFIALMYVGFGVLGYFAFGSET----KD---IITANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERR 331 (426)
Q Consensus 259 ~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~----~~---~i~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~ 331 (426)
+|++..+.....+.|...-......-+.+. .+ .+..+....+...+.+....+..+.+..-.+....+.+...
T Consensus 234 PrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ 313 (456)
T PRK10238 234 PKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGL 313 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888888888764333221111110 01 11222232334444455555555555555555555555443
Q ss_pred hcCCc------------chhHHHHHHHHHHHHHHh---hcCC--ccchhhhhchhhhhhhHhHHHHHHHHHHhcc
Q 043105 332 FKGGE------------YCLWLRWLLVFLVSLVAM---SVPN--FADFLSLVGSSVCCGLGFVLPALFHLLVFKE 389 (426)
Q Consensus 332 ~~~~~------------~~~~~~~~~~~~~~~~a~---~~~~--~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~~ 389 (426)
-+++. .+...-.....++.+..+ ..|+ ++.+.++. ..+..+.|.+|.+.+++.+|+
T Consensus 314 ardg~lP~~f~kv~~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~--~~~~~i~y~~~~~~~l~~r~~ 386 (456)
T PRK10238 314 AQQGNAPKALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALV--VSALVINWAMISLAHMKFRRA 386 (456)
T ss_pred HhCCCccHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 32211 111111111112222222 2232 55566663 345679999999999998863
No 31
>PRK10746 putative transport protein YifK; Provisional
Probab=99.75 E-value=6.9e-15 Score=145.53 Aligned_cols=341 Identities=12% Similarity=0.046 Sum_probs=213.1
Q ss_pred CCCCCChHHHHHHHHHHhhhhhhchhhH-HHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhh
Q 043105 34 PAPLSSQTKTFANVFIAIVGAGVLGLPY-AFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDL 112 (426)
Q Consensus 34 ~~~~~s~~~~~~~l~~s~iG~Gil~lP~-~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l 112 (426)
.+|+.+.++.....++++||+|++..|. +.+.+|. ..++..++.+++.......+.|..... |...++.+.
T Consensus 8 l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~-------P~sGg~~~y 79 (461)
T PRK10746 8 LQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLE-------PVTGSFAVY 79 (461)
T ss_pred HhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCCCHHHH
Confidence 4688999999999999999999999875 4667776 456778888888888888888888776 455677888
Q ss_pred HHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 043105 113 GFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIF 192 (426)
Q Consensus 113 ~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 192 (426)
+++.+|+++++++.+.+++.......+.....+.+++.+++.. . .+.......+.+......+.|..+.++..
T Consensus 80 ~~~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~-----~--~~~~~~~~~~~~~~lN~~gv~~~~~~e~~ 152 (461)
T PRK10746 80 AHRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEM-----A--QWIPALIAVALVALANLAAVRLYGEIEFW 152 (461)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-----c--hHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999998877777777777778877776542 1 12222222223333455666666666554
Q ss_pred HHHHHHHHhhhhhh-------hhhhhh-c----cCCcccc-c-cCChhhHHHHHHHHHhhhccceeeccchhhcccc-cc
Q 043105 193 ADVVDLAATAVVMV-------DEVVIS-L----KQMPEVA-A-FGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKK-EK 257 (426)
Q Consensus 193 ~~~~~~~~~~~~i~-------~~~~~~-~----~~~~~~~-~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~ 257 (426)
.....+..+...+. ...... . .+..+.. . .+++.++..++....|+|.|.+.+....+|.||| |+
T Consensus 153 ~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~ 232 (461)
T PRK10746 153 FAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVT 232 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhH
Confidence 44333322221111 111100 0 0010111 1 1246678899999999999999999999999999 56
Q ss_pred chhhHHHHHHHHHHHHHHHHhHhhhhcCCcccc----c---hhcccCCchHHHHHHHHHHHHHHhhhccchhhHHHHHHH
Q 043105 258 FGGILGLSVTFIALMYVGFGVLGYFAFGSETKD----I---ITANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVER 330 (426)
Q Consensus 258 ~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~----~---i~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~ 330 (426)
++|++..+...+.++|....+......+.+..+ . ...+........+.+....+..+.+....++...+.+..
T Consensus 233 iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~ 312 (461)
T PRK10746 233 LRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYA 312 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888999998655544444433221 1 112222223344555666666666665556655555554
Q ss_pred hhcCCcchhH----------HHHHH-HHH----HHHHHhhcCCccchhhhhc--hhhhhhhHhHHHHHHHHHHhcc
Q 043105 331 RFKGGEYCLW----------LRWLL-VFL----VSLVAMSVPNFADFLSLVG--SSVCCGLGFVLPALFHLLVFKE 389 (426)
Q Consensus 331 ~~~~~~~~~~----------~~~~~-~~~----~~~~a~~~~~~~~i~~~~G--~~~~~~~~~ilP~l~~l~~~~~ 389 (426)
.-+++..+++ .+.++ ... ...+....|+-+.+++.+. +.....+.++++++.+++.+|+
T Consensus 313 ~a~~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~ 388 (461)
T PRK10746 313 LAKNRQLPAAMAKVSRHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRA 388 (461)
T ss_pred HHhCCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4332211000 11111 111 1222233454444444332 2234578999999999998864
No 32
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.74 E-value=7e-15 Score=146.05 Aligned_cols=340 Identities=13% Similarity=0.073 Sum_probs=202.9
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhH-HHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhh
Q 043105 33 KPAPLSSQTKTFANVFIAIVGAGVLGLPY-AFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGD 111 (426)
Q Consensus 33 ~~~~~~s~~~~~~~l~~s~iG~Gil~lP~-~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~ 111 (426)
+.+|+.+.++.....++++||+|++..|. +.++.|. ..+...++++++.......+.|..... +....+.+
T Consensus 17 ~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~-------~~~~~~~~ 88 (469)
T PRK11049 17 SLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSN-------LEYKSFSD 88 (469)
T ss_pred hhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCCcHHH
Confidence 35788999999999999999999999875 6777777 456677777777777777777765542 33445667
Q ss_pred hHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 043105 112 LGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSI 191 (426)
Q Consensus 112 l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 191 (426)
.+++.+||..++++.+.+++.......+.....+.++..+++.. . .+...+...+.+-.....+.|..++++.
T Consensus 89 ya~~~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~-----~--~~~~~~~~~~~~~~iN~~g~~~~~~i~~ 161 (469)
T PRK11049 89 FASDLLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDL-----S--DWVASLAVVLLLLSLNLATVKMFGEMEF 161 (469)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----c--HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 89999999999999999998776555556666677776665532 1 2222222223333455667777777776
Q ss_pred HHHHHHHHHhhhhhhhhhhhh-----cc-----CCcc----ccc-cCChhhHHHHHHHHHhhhccceeeccchhhccccc
Q 043105 192 FADVVDLAATAVVMVDEVVIS-----LK-----QMPE----VAA-FGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKE 256 (426)
Q Consensus 192 ~~~~~~~~~~~~~i~~~~~~~-----~~-----~~~~----~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~ 256 (426)
+.....+..+...++...... .+ ...+ ... +.++.++..++....|+|.|.+.+....+|+|||+
T Consensus 162 ~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~ 241 (469)
T PRK11049 162 WFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPE 241 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHh
Confidence 655554443333322211100 00 0000 011 12345688999999999999999999999999995
Q ss_pred -cchhhHHHHHHHHHHHHHHHHhHhhhhcCCccc----cc---hhcccCCchHHHHHHHHHHHHHHhhhccchhhHHHHH
Q 043105 257 -KFGGILGLSVTFIALMYVGFGVLGYFAFGSETK----DI---ITANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIV 328 (426)
Q Consensus 257 -~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~----~~---i~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~ 328 (426)
+++|++..+...+.++|.+........-+.+.. +. ........+...+..++..++.+.+....+....+.+
T Consensus 242 r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l 321 (469)
T PRK11049 242 KSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRML 321 (469)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999877878888888766655433222211 11 1111122233444445555555544444344333344
Q ss_pred HHhhcC------------CcchhHHHHHHH-----HHHHHHHhhcCCccchhhhhch--hhhhhhHhHHHHHHHHHHhcc
Q 043105 329 ERRFKG------------GEYCLWLRWLLV-----FLVSLVAMSVPNFADFLSLVGS--SVCCGLGFVLPALFHLLVFKE 389 (426)
Q Consensus 329 ~~~~~~------------~~~~~~~~~~~~-----~~~~~~a~~~~~~~~i~~~~G~--~~~~~~~~ilP~l~~l~~~~~ 389 (426)
...-++ ++.+ .+..++ .+...+....|+.....+.+-. .....+.++++...+++.+|+
T Consensus 322 ~a~ardg~lP~~~~kv~~~~tP--~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~ 399 (469)
T PRK11049 322 FGLAQEGVAPKAFAKLSKRAVP--AKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVYRKQ 399 (469)
T ss_pred HHHHhCCCCCHHHHhhCCCCCC--HHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333221 1111 111111 1112223344654444443322 233457888888888888754
No 33
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.73 E-value=1.5e-15 Score=143.33 Aligned_cols=287 Identities=14% Similarity=0.133 Sum_probs=226.3
Q ss_pred CCChHHHHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhHHHH
Q 043105 37 LSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGFVV 116 (426)
Q Consensus 37 ~~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~ 116 (426)
|+|..|....+..+++|+|++.+|....+.+- .|++..++.+........+..+..++.+++ +..|..++.
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~--------~l~~~~~~~ 71 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRFPGK--------TLVEISEKL 71 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCC--------CHHHHHHHH
Confidence 57899999999999999999999998776653 778888888888888888888888887655 999999999
Q ss_pred hcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 043105 117 CGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFADVV 196 (426)
Q Consensus 117 ~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 196 (426)
+||+.+.+....+.++............+|.++..+-. +...+.+..+..+..-....++++.+++.+.+....
T Consensus 72 ~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp------~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~ 145 (320)
T PF03845_consen 72 FGKWLGKIINLLYILYFLLISALVLREFSEFIKTYLLP------ETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPI 145 (320)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------cCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998876432 223455555555556667789999999977776666
Q ss_pred HHHHhhhhhhhhhhhhccCCccccccCChhhHHHHHHHHHhhhccceeeccchhhccccccchhhHHHHHHHHHHHHHHH
Q 043105 197 DLAATAVVMVDEVVISLKQMPEVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKEKFGGILGLSVTFIALMYVGF 276 (426)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~~~Y~~~ 276 (426)
.+.....+......+.+..+-.+....++.++.++.....+.|.+...+..+.+.+|||+|.+|....+...+.++|...
T Consensus 146 ~~i~~~~i~~~~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~~~~~~~~~~~~~~ 225 (320)
T PF03845_consen 146 FLILLLLILLLSIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLLIAILISGLFLLFI 225 (320)
T ss_pred HHHHHHHHHHHhcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 66655555444444322222122223467889999888999999999999999999999999999999999999999999
Q ss_pred HhHhhhhcCCccccch-------h--cccCC--chHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcCCcch
Q 043105 277 GVLGYFAFGSETKDII-------T--ANLGA--GFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGGEYC 338 (426)
Q Consensus 277 g~~gy~~fg~~~~~~i-------~--~~~~~--~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~~~ 338 (426)
-+.....||.+..++. . .++++ ++...+....+....+.+..+..+...+.+.+.++.++++
T Consensus 226 ~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 298 (320)
T PF03845_consen 226 IFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLKDYK 298 (320)
T ss_pred HHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 9999999997644332 1 11121 3556667788889999999999999999999999877654
No 34
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.73 E-value=2e-15 Score=141.53 Aligned_cols=339 Identities=15% Similarity=0.129 Sum_probs=226.1
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhc-hhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhh
Q 043105 33 KPAPLSSQTKTFANVFIAIVGAGVL-GLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGD 111 (426)
Q Consensus 33 ~~~~~~s~~~~~~~l~~s~iG~Gil-~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~ 111 (426)
+.+|+.+.++--..-++..||+|.+ +--.+.+.+|... ++..+++|.+.++-++.+.|...+. |...++.+
T Consensus 10 ~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPSv-lLaY~I~G~~~f~iMRaLGEm~~~~-------p~~gSF~~ 81 (462)
T COG1113 10 GLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPSV-LLAYLIAGIFVFLIMRALGEMLVAN-------PVSGSFSD 81 (462)
T ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcHH-HHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCcHHH
Confidence 3568899999999999999999954 6678899999766 7777888999888888888866653 56779999
Q ss_pred hHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHH---HHhhhhhhhhhhhH
Q 043105 112 LGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQ---LGLNSIATLTHLAP 188 (426)
Q Consensus 112 l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~---~pl~~~~~l~~l~~ 188 (426)
.+++.+|++++++.++.+++.....+.+.+...+.+++.++|+. ..|...+..+++ ..+...|...++.+
T Consensus 82 ~a~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v-------P~Wv~al~~~~l~~~~NL~sVk~FGE~Ef 154 (462)
T COG1113 82 YARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV-------PQWVFALAAVVLLLAVNLISVKVFGELEF 154 (462)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999874 344443333333 33344444444443
Q ss_pred H-HHHHHHHHHHHhhh--hhhh-hhhhhc--cCCccc---c--ccCChhhHHHHHHHHHhhhccceeeccchhhcccccc
Q 043105 189 L-SIFADVVDLAATAV--VMVD-EVVISL--KQMPEV---A--AFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKEK 257 (426)
Q Consensus 189 ~-s~~~~~~~~~~~~~--~i~~-~~~~~~--~~~~~~---~--~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~ 257 (426)
+ +.+-...++..++. .+.. ...... .+..+. . -++++.++..++.+.+|||++.+.+-.-..|-|||+|
T Consensus 155 WfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k 234 (462)
T COG1113 155 WFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEK 234 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhh
Confidence 2 22222222111111 1111 111111 011111 1 1245789999999999999999999999999999965
Q ss_pred -chhhHHHHHHHHHHHHHH-----HHhHhhhhcCCccccch--hcccCCchHHHHHHHHHHHHHHhhhccchhhHHHHHH
Q 043105 258 -FGGILGLSVTFIALMYVG-----FGVLGYFAFGSETKDII--TANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVE 329 (426)
Q Consensus 258 -~~~~~~~~~~~~~~~Y~~-----~g~~gy~~fg~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~ 329 (426)
.+|++..-..-..++|.. +.+.-+-.++++..+.+ ....+-.....+.|+.......+++---++...+.+.
T Consensus 235 ~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~ 314 (462)
T COG1113 235 AIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLY 314 (462)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcccccccccchHHH
Confidence 788877666666666663 33333333444333322 2333334555666677777777777777777777777
Q ss_pred HhhcCCcc------------hh---HHHHHHHHHHHHHHhhcCC--ccchhhhhchhhhhhhHhHHHHHHHHHHhc
Q 043105 330 RRFKGGEY------------CL---WLRWLLVFLVSLVAMSVPN--FADFLSLVGSSVCCGLGFVLPALFHLLVFK 388 (426)
Q Consensus 330 ~~~~~~~~------------~~---~~~~~~~~~~~~~a~~~~~--~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~ 388 (426)
.+-++.+- +. ....+...+..++....|+ |..+.+..+ ......+.+-.+.|+|.+|
T Consensus 315 ~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~--~~~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 315 SLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSG--LGLLFVWLMILLSQLKLRK 388 (462)
T ss_pred HHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 66432211 10 1344445556677777784 555555543 4556777788888999987
No 35
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.73 E-value=9e-15 Score=146.67 Aligned_cols=245 Identities=10% Similarity=0.054 Sum_probs=160.4
Q ss_pred CCCCCCCChHHHHHHHHHHhhhhhhchhhHHH-hccchhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccch
Q 043105 32 GKPAPLSSQTKTFANVFIAIVGAGVLGLPYAF-KRTGWLM-GSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSF 109 (426)
Q Consensus 32 ~~~~~~~s~~~~~~~l~~s~iG~Gil~lP~~~-~~~G~~~-g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y 109 (426)
.+.+|+.+.++.+...+++++|+|++..|... .+.|... .++..++.++.....+..+.|.....+ +....
T Consensus 38 ~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P-------~sGG~ 110 (501)
T TIGR00911 38 VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIP-------KSGGE 110 (501)
T ss_pred cccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------CCCch
Confidence 45788999999999999999999999998764 4556432 234556777777788888888887764 33445
Q ss_pred hhhHHHHhcccchhHHHHHHHH-HhhhhHHHHHHHHHHhH-HHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhh
Q 043105 110 GDLGFVVCGSIGRGIVDVLIIL-SQAGFCISYLMFIANTL-VYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLA 187 (426)
Q Consensus 110 ~~l~~~~~G~~~~~i~~~~~~~-~~~g~~~~y~i~~~~~l-~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 187 (426)
....++.+||+.+++..+..+. ...+.+..+....++++ +.+++....+. .....+.+..++..-.....+.|...
T Consensus 111 y~~~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~--~~~~~i~~~~i~~~~~ln~~Gvk~~~ 188 (501)
T TIGR00911 111 YNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPE--WAIRLVAVLCVLLLTLVNCLSVKWAT 188 (501)
T ss_pred hhhHHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCch--HHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 5558889999999988876554 22344555556566664 33343321111 11112222223334445566788888
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhh---hcc---CCcc-ccc-cCChhhHHHHHHHHHhhhccceeeccchhhcccc-ccc
Q 043105 188 PLSIFADVVDLAATAVVMVDEVVI---SLK---QMPE-VAA-FGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKK-EKF 258 (426)
Q Consensus 188 ~~s~~~~~~~~~~~~~~i~~~~~~---~~~---~~~~-~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~ 258 (426)
+++.+.....+..++..+...... ... +..+ ... .++..++..++....|+|.|.+.+....+|+||| |+.
T Consensus 189 ~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~i 268 (501)
T TIGR00911 189 RVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTL 268 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhh
Confidence 887777666555433332222111 000 0000 011 1235678888999999999999999999999999 569
Q ss_pred hhhHHHHHHHHHHHHHHHHhHhhhhcC
Q 043105 259 GGILGLSVTFIALMYVGFGVLGYFAFG 285 (426)
Q Consensus 259 ~~~~~~~~~~~~~~Y~~~g~~gy~~fg 285 (426)
+|++..+..++.++|++..+......+
T Consensus 269 PrAi~~s~~~v~~~Y~l~~~a~~~~~~ 295 (501)
T TIGR00911 269 PIAIIISMPIVTFIYVLTNIAYFTVLS 295 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999998766655444
No 36
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.72 E-value=1.2e-14 Score=143.54 Aligned_cols=233 Identities=13% Similarity=0.087 Sum_probs=163.2
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhh
Q 043105 33 KPAPLSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDL 112 (426)
Q Consensus 33 ~~~~~~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l 112 (426)
+.+|+.+.++.+...++.++|......+.+++..|+..-++..++.++.....+..+.|...+.+ +.......
T Consensus 4 ~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P-------~~Gg~y~~ 76 (442)
T TIGR00908 4 QLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIP-------TAGGGYGF 76 (442)
T ss_pred hhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCCHHHH
Confidence 35788999999999999999854556678888888865556667777777777778888888774 44555667
Q ss_pred HHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 043105 113 GFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIF 192 (426)
Q Consensus 113 ~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 192 (426)
+++.+||+.+++..+..++.......++....++++..+++... .+...+.....+-+...++.|..++++..
T Consensus 77 ~~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~~-------~~~~~~~~~~~~~~ln~~g~~~~~~i~~~ 149 (442)
T TIGR00908 77 ARRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGP-------GWLAALVFYIVFIGINILGVGEAAKLEFV 149 (442)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-------hhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 89999999999999999988888888888889999888876431 12222222223334556677777777766
Q ss_pred HHHHHHHHhhhhhhhhhhh-----hc-cCCcccccc--CChhhHHHHHHHHHhhhccceeeccchhhcccc-ccchhhHH
Q 043105 193 ADVVDLAATAVVMVDEVVI-----SL-KQMPEVAAF--GNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKK-EKFGGILG 263 (426)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~-----~~-~~~~~~~~~--~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~ 263 (426)
..+..+..+.+.+...... .. .+..+...+ ..+.++..++....|+|.|++......+|+||| |+.+|++.
T Consensus 150 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~ 229 (442)
T TIGR00908 150 VTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLI 229 (442)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHH
Confidence 5554444332222111110 00 001111111 124567888888999999999999999999999 56999999
Q ss_pred HHHHHHHHHHHHHHhH
Q 043105 264 LSVTFIALMYVGFGVL 279 (426)
Q Consensus 264 ~~~~~~~~~Y~~~g~~ 279 (426)
.+..++..+|+.....
T Consensus 230 ~s~~~~~~~~~~~~~~ 245 (442)
T TIGR00908 230 GAILTLLALAAGILVV 245 (442)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988876443
No 37
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.72 E-value=3.1e-14 Score=142.12 Aligned_cols=339 Identities=11% Similarity=-0.001 Sum_probs=206.0
Q ss_pred CCCCChHHHHHHHHHHhhhhhhchhhH-HHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhH
Q 043105 35 APLSSQTKTFANVFIAIVGAGVLGLPY-AFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLG 113 (426)
Q Consensus 35 ~~~~s~~~~~~~l~~s~iG~Gil~lP~-~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~ 113 (426)
+|+.+.++.....++++||+|++..|. +.+..|....+...++.+++.......+.|.....++ ....|.+.+
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~------~gG~~~~~~ 74 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPV------VSGSFATYA 74 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------CCCCHHHHH
Confidence 467999999999999999999998875 5666665444667788888888888888888887742 234677889
Q ss_pred HHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 043105 114 FVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFA 193 (426)
Q Consensus 114 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 193 (426)
++.+|++.++++.+.+++.......+.....+..+..+.+.. ....+.. ...++.-+...++.|..++++...
T Consensus 75 ~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~in~~gv~~~~~~~~~~ 147 (478)
T TIGR00913 75 SRFVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKV-----NPAVWIA--IFYVFIVIINLFGVKGYGEAEFWF 147 (478)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-----CHHHHHH--HHHHHHHHHHHhcchHHHHHHHHH
Confidence 999999999999999998887777777777777776554321 2222222 122223344566777777777655
Q ss_pred HHHHHHHhhhhhh-------hhhhhhc-c---CCccccccC------ChhhHHHHHHHHHhhhccceeeccchhhcccc-
Q 043105 194 DVVDLAATAVVMV-------DEVVISL-K---QMPEVAAFG------NLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKK- 255 (426)
Q Consensus 194 ~~~~~~~~~~~i~-------~~~~~~~-~---~~~~~~~~~------~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p- 255 (426)
....+..++..+. ....... . ...+...+. .+.++..++....|+|.|.+......+|+|||
T Consensus 148 ~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~ 227 (478)
T TIGR00913 148 SSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPR 227 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChh
Confidence 4333322221111 1100000 0 000011111 25678888899999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhHhhhhcCCccc-------------cc---hhcccCCchHHHHHHHHHHHHHHhhhcc
Q 043105 256 EKFGGILGLSVTFIALMYVGFGVLGYFAFGSETK-------------DI---ITANLGAGFVSVLVQLGLCINLFFTFPL 319 (426)
Q Consensus 256 ~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~-------------~~---i~~~~~~~~~~~~~~~~~~~~~~~s~pl 319 (426)
|+++|++..+..++.++|.+..+......+.+.. +. ..++....+...+..++..++.+.+.--
T Consensus 228 r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~ 307 (478)
T TIGR00913 228 KSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVILISVLSAANS 307 (478)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHHHHHHHHHHHh
Confidence 5699999999999999999876543333331110 00 1122222344445555555666555555
Q ss_pred chhhHHHHHHHhhcCC------------cchhHHHHHHHHHHHHHHhhcC-----CccchhhhhchhhhhhhHhHHHHHH
Q 043105 320 MMHPVYEIVERRFKGG------------EYCLWLRWLLVFLVSLVAMSVP-----NFADFLSLVGSSVCCGLGFVLPALF 382 (426)
Q Consensus 320 ~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~a~~~~-----~~~~i~~~~G~~~~~~~~~ilP~l~ 382 (426)
.+....+.+...-+++ +.+...-.....+..+.....+ .++.+.++. .....+.|+++++.
T Consensus 308 ~~~~~sR~l~a~ardg~lP~~f~k~~~~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~--~~~~~i~y~~~~~~ 385 (478)
T TIGR00913 308 SLYASSRTLYALAHQGLAPKIFAYVDRRGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNIS--GLSGFFTWMCICLS 385 (478)
T ss_pred hHHHHHHHHHHHHhCCcccHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 4554444443332221 1111111111111111111111 144455553 34567889999998
Q ss_pred HHHHhc
Q 043105 383 HLLVFK 388 (426)
Q Consensus 383 ~l~~~~ 388 (426)
+++.+|
T Consensus 386 ~i~~r~ 391 (478)
T TIGR00913 386 HIRFRK 391 (478)
T ss_pred HHHHHH
Confidence 888865
No 38
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.72 E-value=2.6e-14 Score=141.70 Aligned_cols=234 Identities=12% Similarity=0.053 Sum_probs=160.6
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhHH-HhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhh
Q 043105 33 KPAPLSSQTKTFANVFIAIVGAGVLGLPYA-FKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGD 111 (426)
Q Consensus 33 ~~~~~~s~~~~~~~l~~s~iG~Gil~lP~~-~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~ 111 (426)
+.+|+.+.++.....+++++|+|++.+|.. .+.+|. ..++..+++++........+.|...+.+ ......+
T Consensus 6 ~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P-------~~Gg~y~ 77 (457)
T PRK10580 6 KLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNP-------AASSFSR 77 (457)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCCHHH
Confidence 357889999999999999999999999876 555665 4688889999999999999999888774 4456666
Q ss_pred hHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 043105 112 LGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSI 191 (426)
Q Consensus 112 l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 191 (426)
.+++.+||..++++.+.+++.............+.+++.++++.. ...+. +...++.-....++.|....++.
T Consensus 78 y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~~~l~~~ln~~gv~~~~~~~~ 150 (457)
T PRK10580 78 YAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVP-----HWIWV--LSVVLIICAVNLMSVKVFGELEF 150 (457)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-----hHHHH--HHHHHHHHHHHHccchhHHHHHH
Confidence 789999999999999998887766666656666677766654321 11222 22222333445566777777665
Q ss_pred HHHHHHHHHhhhhhh-------hhhhhhcc-----C-Cccccc-cCChhhHHHHHHHHHhhhccceeeccchhhccccc-
Q 043105 192 FADVVDLAATAVVMV-------DEVVISLK-----Q-MPEVAA-FGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKE- 256 (426)
Q Consensus 192 ~~~~~~~~~~~~~i~-------~~~~~~~~-----~-~~~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~- 256 (426)
......+..+...+. ........ + ..+... ..++.++..++....|+|.|.+......+|+|||+
T Consensus 151 ~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k 230 (457)
T PRK10580 151 WFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEK 230 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhh
Confidence 544443332222111 11110000 0 011011 12345778888999999999999999999999995
Q ss_pred cchhhHHHHHHHHHHHHHHHHhHhh
Q 043105 257 KFGGILGLSVTFIALMYVGFGVLGY 281 (426)
Q Consensus 257 ~~~~~~~~~~~~~~~~Y~~~g~~gy 281 (426)
+.+|++..+...+.++|........
T Consensus 231 ~iPrAi~~~~~~~~~~y~~~~~~~~ 255 (457)
T PRK10580 231 SIPRAINSVPMRILVFYVGTLFVIM 255 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5999999888888888887755443
No 39
>PRK10836 lysine transporter; Provisional
Probab=99.71 E-value=4.7e-14 Score=140.89 Aligned_cols=239 Identities=10% Similarity=0.032 Sum_probs=153.7
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhH-HHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhh
Q 043105 33 KPAPLSSQTKTFANVFIAIVGAGVLGLPY-AFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGD 111 (426)
Q Consensus 33 ~~~~~~s~~~~~~~l~~s~iG~Gil~lP~-~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~ 111 (426)
+.+|+.+.++.....++++||+|++.+|. +.++.|....++..++++++....+..+.|...+.+ +.....+
T Consensus 12 ~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P-------~sGg~y~ 84 (489)
T PRK10836 12 GLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMP-------VSGSFAT 84 (489)
T ss_pred cccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CCCCHHH
Confidence 35688999999999999999999999996 566777655688889999999999999999888874 5556666
Q ss_pred hHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 043105 112 LGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSI 191 (426)
Q Consensus 112 l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 191 (426)
.+++.+|+..++++.+.+++................+..+++.. . .+......++++-.....+.|..+.++.
T Consensus 85 y~~~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~lN~~gv~~~~~~~~ 157 (489)
T PRK10836 85 YGQNYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDT-----P--GWIWSALFLGVIFLLNYISVRGFGEAEY 157 (489)
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-----c--hHHHHHHHHHHHHHHHHHcchhhhhhHH
Confidence 68899999999999998877543333322222322333333321 1 1111122222223344556665555554
Q ss_pred HHHHHHHHHhhhhh------hhhhhhhc-----cCCc--cccccCChhhHHHHHHHHHhhhccceeeccchhhcccc-cc
Q 043105 192 FADVVDLAATAVVM------VDEVVISL-----KQMP--EVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKK-EK 257 (426)
Q Consensus 192 ~~~~~~~~~~~~~i------~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~ 257 (426)
...+..+..++..+ ........ .+.. +.+..+++..+..+.....|+|.|.+.+....+|+||| |+
T Consensus 158 ~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~ 237 (489)
T PRK10836 158 WFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKN 237 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHH
Confidence 43333322211111 11111000 0010 00111234455556666789999999999999999999 56
Q ss_pred chhhHHHHHHHHHHHHHHHHhHhhhhcC
Q 043105 258 FGGILGLSVTFIALMYVGFGVLGYFAFG 285 (426)
Q Consensus 258 ~~~~~~~~~~~~~~~Y~~~g~~gy~~fg 285 (426)
++|++..++..+.++|...........+
T Consensus 238 iPrAi~~~~~~v~~~Yvl~~~~~~~~vp 265 (489)
T PRK10836 238 IPRAVRQVFWRILLFYVFAILIISLIIP 265 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 9999999999999999988766555444
No 40
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.71 E-value=1.8e-14 Score=142.40 Aligned_cols=238 Identities=11% Similarity=0.062 Sum_probs=158.7
Q ss_pred CCCCCChHHHHHHHHHHhhhhhhchhhHHH-hccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhh
Q 043105 34 PAPLSSQTKTFANVFIAIVGAGVLGLPYAF-KRTGWL-MGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGD 111 (426)
Q Consensus 34 ~~~~~s~~~~~~~l~~s~iG~Gil~lP~~~-~~~G~~-~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~ 111 (426)
.+|+.+.++.+...+++++|+|++..|... ...|.. ..++..++.+++.......+.|.....++. .+.+.|
T Consensus 6 L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~----GG~y~y-- 79 (445)
T PRK11357 6 LQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPEN----GADYVY-- 79 (445)
T ss_pred ccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC----CCceee--
Confidence 578899999999999999999999999764 445643 356667888888888888899988887542 344444
Q ss_pred hHHHHhcccchhHHHHHHH-HHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q 043105 112 LGFVVCGSIGRGIVDVLII-LSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLS 190 (426)
Q Consensus 112 l~~~~~G~~~~~i~~~~~~-~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 190 (426)
.++.+||..+++..+... .........+....++++..+.+.. ........+...+.+-....++.|..++++
T Consensus 80 -~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~-----~~~~~~~~~~~~~~~~~ln~~gv~~~~~v~ 153 (445)
T PRK11357 80 -LKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPID-----PLLGKFIAAGLIIAFMLLHLRSVEGGAAFQ 153 (445)
T ss_pred -HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----hHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 778999999999888754 3333445556667777766544321 111111222222233344567777777777
Q ss_pred HHHHHHHHHHhhhhhhhhh---hhhc--cCCccc-cccCChhhHHHHHHHHHhhhccceeeccchhhcccc-ccchhhHH
Q 043105 191 IFADVVDLAATAVVMVDEV---VISL--KQMPEV-AAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKK-EKFGGILG 263 (426)
Q Consensus 191 ~~~~~~~~~~~~~~i~~~~---~~~~--~~~~~~-~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~ 263 (426)
.+.....+..+++++.... .... .+.... ...+++.++..++....|+|.|.+......+|+||| |+++|++.
T Consensus 154 ~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~ 233 (445)
T PRK11357 154 TLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALI 233 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHH
Confidence 7666555543332222111 1100 010000 111124567788899999999999999999999999 55899999
Q ss_pred HHHHHHHHHHHHHHhHhhhh
Q 043105 264 LSVTFIALMYVGFGVLGYFA 283 (426)
Q Consensus 264 ~~~~~~~~~Y~~~g~~gy~~ 283 (426)
.+..++.++|.+........
T Consensus 234 ~~~~i~~~~Y~l~~~~~~~~ 253 (445)
T PRK11357 234 GSCLLVLVLYTLLALVISGL 253 (445)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99999999999877655433
No 41
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.70 E-value=1.8e-14 Score=151.74 Aligned_cols=243 Identities=14% Similarity=0.056 Sum_probs=173.9
Q ss_pred CCCCCCChHHHHHHH-HHHhhhhhhchh-hHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccccCCccccch
Q 043105 33 KPAPLSSQTKTFANV-FIAIVGAGVLGL-PYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRK-LESSEHGFTKINSF 109 (426)
Q Consensus 33 ~~~~~~s~~~~~~~l-~~s~iG~Gil~l-P~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~-~~~~~~~~~~~~~y 109 (426)
+++++.+++++++.- +.+++|+|++.- ++.+.++|...+++..+++++++..++..+.+.... . ++...-
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~-------p~aGG~ 145 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGV-------VKGGGA 145 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CCccHH
Confidence 456889999999888 999999998865 577789998888999999999999999999887775 3 233333
Q ss_pred hhhHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhcccc----CCCchhHHHHHHHHHHHHHhhhhhhhhh
Q 043105 110 GDLGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTI----LGMSAKGFYIWSCLPFQLGLNSIATLTH 185 (426)
Q Consensus 110 ~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~----~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 185 (426)
..+.++.+|+..+..+.+++++.+...+..|.+.+++++..+++.... ..... ..++.+..++++......+.+.
T Consensus 146 Y~yisralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~-~~iia~i~l~ll~~In~~Gvk~ 224 (953)
T TIGR00930 146 YYLISRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPIND-IRIYGTVTVVVLLGISFAGMEW 224 (953)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcccc-chHHHHHHHHHHHHHHHhhHHH
Confidence 344789999999999999999989899999999999999888764211 00011 1122233333344455678888
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhh-ccC-----------Ccc--ccccCC-hhhHHHHHHHHHhhhccceeeccchh
Q 043105 186 LAPLSIFADVVDLAATAVVMVDEVVIS-LKQ-----------MPE--VAAFGN-LSVFFYGIGVAVYAFEGIGMVLPLEA 250 (426)
Q Consensus 186 l~~~s~~~~~~~~~~~~~~i~~~~~~~-~~~-----------~~~--~~~~~~-~~~~~~~~~~~~faf~~~~~i~~i~~ 250 (426)
.++++.+.+++.++.++.+++..+... ... ..+ .+.+.+ ...+...++++.+||.|......+..
T Consensus 225 ~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sg 304 (953)
T TIGR00930 225 ENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISG 304 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777665555444443222110 000 000 011111 22377788888889999999999999
Q ss_pred hcccc-ccchhhHHHHHHHHHHHHHHHHhHhhhh
Q 043105 251 EMEKK-EKFGGILGLSVTFIALMYVGFGVLGYFA 283 (426)
Q Consensus 251 ~m~~p-~~~~~~~~~~~~~~~~~Y~~~g~~gy~~ 283 (426)
|+||| |+++|++..++.+++++|+++.++....
T Consensus 305 ElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~ 338 (953)
T TIGR00930 305 DLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGAC 338 (953)
T ss_pred hccChhhhhHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999 5599999999999999999987644333
No 42
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.70 E-value=4.1e-14 Score=139.35 Aligned_cols=340 Identities=17% Similarity=0.182 Sum_probs=215.4
Q ss_pred CChHHHHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccccCCccccchhhhHHHH
Q 043105 38 SSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALT-FHCMMLLVHTRRKLESSEHGFTKINSFGDLGFVV 116 (426)
Q Consensus 38 ~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~-~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~ 116 (426)
.++++++...+++++|+|++..| .....|.. .++..++.+.+. ......+.|..++. |+.....+..++.
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~-------p~~GG~y~~~~~~ 71 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAY-------PSAGGIYVWVSRA 71 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTT-------TSSTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccC-------CCcCeeeehhhhc
Confidence 37899999999999999999999 77676664 465666665555 56666677765544 4566666779999
Q ss_pred hcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 043105 117 CGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFADVV 196 (426)
Q Consensus 117 ~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 196 (426)
+||+.+++..+...+.......++.....+.+...+..... +.......+.+...+.......++.|..++++......
T Consensus 72 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 150 (426)
T PF13520_consen 72 FGPFWGFIVGWLYWVAYILSLASVASSFASYLLSLFGPDLN-PSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVI 150 (426)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGT-CSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred ccccchhcccceeEEEeeccccccccchhhhhhhccccccc-cccchheeeeecccccceEeeechhhhhhhhhhhhhhh
Confidence 99999999999999999888888888888888776543110 11112223333334444455667778888877776666
Q ss_pred HH-HHhhhhhhhhhh----hhccC---CccccccCChhhHHHHHHHHHhhhccceeeccchhhccccccchhhHHHHHHH
Q 043105 197 DL-AATAVVMVDEVV----ISLKQ---MPEVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKEKFGGILGLSVTF 268 (426)
Q Consensus 197 ~~-~~~~~~i~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~ 268 (426)
.+ ..++..+..... +.... ..+......+.....++....|+|.|.+..+...+|+|| |+.+|++..+.++
T Consensus 151 ~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~ai~~~~~~ 229 (426)
T PF13520_consen 151 KIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPRAIIISIII 229 (426)
T ss_dssp HHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHHHHHHHHHH
T ss_pred hhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc-hhheeecccchhH
Confidence 65 232222211111 11110 011111123446788999999999999999999999998 8899999999999
Q ss_pred HHHHHHHHHhHhhhhcCCcccc---ch-------hcccCCchHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcCCcc-
Q 043105 269 IALMYVGFGVLGYFAFGSETKD---II-------TANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGGEY- 337 (426)
Q Consensus 269 ~~~~Y~~~g~~gy~~fg~~~~~---~i-------~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~~- 337 (426)
+.++|.+..+......+++..+ +. .+....++...+..+...+..+.+....+....+.+...-+++..
T Consensus 230 ~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP 309 (426)
T PF13520_consen 230 VAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLP 309 (426)
T ss_dssp HHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhcccccccccchh
Confidence 9999999988877776654322 11 111122355566666666777777666666665566554433211
Q ss_pred -----------hhHHHHHHHHHHHHHHhh---cC--CccchhhhhchhhhhhhHhHHHHHHHHHHhccc
Q 043105 338 -----------CLWLRWLLVFLVSLVAMS---VP--NFADFLSLVGSSVCCGLGFVLPALFHLLVFKEE 390 (426)
Q Consensus 338 -----------~~~~~~~~~~~~~~~a~~---~~--~~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~~~ 390 (426)
+.........++.++... .| +++.+.+. +.....+.++++.+.+++.++++
T Consensus 310 ~~~~~~~k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~ 376 (426)
T PF13520_consen 310 KWFAKVNKFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSL--SSVGYLISYILVILAVLFLRRKR 376 (426)
T ss_dssp GGGGTTSSSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHH--HHHHTHHHHHHHHHHHHHTHHHS
T ss_pred hhhhhccccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhc
Confidence 111222222333233222 23 35555555 33456677888888777777644
No 43
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.66 E-value=1.3e-13 Score=136.09 Aligned_cols=325 Identities=12% Similarity=0.071 Sum_probs=203.9
Q ss_pred HHHHhhhhhhchhhH-HHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhHHHHhcccchhHH
Q 043105 47 VFIAIVGAGVLGLPY-AFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGFVVCGSIGRGIV 125 (426)
Q Consensus 47 l~~s~iG~Gil~lP~-~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~i~ 125 (426)
.++++||+|++..|. +.++.|. ..++..++.+++....+..+.|...+. |+.....+.+++.+||+.++++
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~-------P~~Gg~y~y~~~~~G~~~gf~~ 74 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVAT-------PDTGSFSTYADKAIGRWAGYTI 74 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCCHHHHHHHHcChHHHHHH
Confidence 467899999999986 6778886 478888999999999999999988877 4555677779999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhhhh
Q 043105 126 DVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFADVVDLAATAVVM 205 (426)
Q Consensus 126 ~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~i 205 (426)
.+.+++.............+..++.+.++. ..+...+...+.+-+....+.|..+.++.......+..++..+
T Consensus 75 gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~i 147 (446)
T PRK10197 75 GWLYWWFWVLVIPLEANIAAMILHSWVPGI-------PIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFI 147 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccC-------cHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHH
Confidence 999988776666555555555555543321 2222223333333345566777777777766655544333332
Q ss_pred hhhhhhh------cc--C---Ccc-cc-ccCChhhHHHHHHHHHhhhccceeeccchhhccccc-cchhhHHHHHHHHHH
Q 043105 206 VDEVVIS------LK--Q---MPE-VA-AFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKE-KFGGILGLSVTFIAL 271 (426)
Q Consensus 206 ~~~~~~~------~~--~---~~~-~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~~~~~~~~ 271 (426)
....... .+ + ..+ .. ....+.++..++....|+|.|.+.+....+|+|||+ +++|++..+...+.+
T Consensus 148 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i 227 (446)
T PRK10197 148 FLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISI 227 (446)
T ss_pred HHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHH
Confidence 2211100 00 0 000 00 112456888999999999999999999999999995 599999999999999
Q ss_pred HHHHHHhHhhhhcCCcccc--------chhcccCCchHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcCCcc------
Q 043105 272 MYVGFGVLGYFAFGSETKD--------IITANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGGEY------ 337 (426)
Q Consensus 272 ~Y~~~g~~gy~~fg~~~~~--------~i~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~~------ 337 (426)
+|+...+........+..+ ...+..+..+...+.+....++.+.+..-.++...+.+...-+++..
T Consensus 228 ~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~ 307 (446)
T PRK10197 228 FYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGK 307 (446)
T ss_pred HHHHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHh
Confidence 9998766644443322111 11233333444555666666666666666666655565544332111
Q ss_pred --h-hH-HHHHHH-----HHHHHHHhhcC--CccchhhhhchhhhhhhHhHHHHHHHHHHhc
Q 043105 338 --C-LW-LRWLLV-----FLVSLVAMSVP--NFADFLSLVGSSVCCGLGFVLPALFHLLVFK 388 (426)
Q Consensus 338 --~-~~-~~~~~~-----~~~~~~a~~~~--~~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~ 388 (426)
+ .. .+.+++ .+..+.....| .++.++++.+. ...+.|+++.+.+++.+|
T Consensus 308 ~~~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~--~~li~y~~~~~a~i~lr~ 367 (446)
T PRK10197 308 INRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGA--IALLVYLVIAVSQLRMRK 367 (446)
T ss_pred hCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 0 00 111111 11111211222 36677777654 345888889888888876
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.58 E-value=5.9e-12 Score=125.53 Aligned_cols=347 Identities=14% Similarity=0.117 Sum_probs=218.9
Q ss_pred CCCCCCChHH-HHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhh
Q 043105 33 KPAPLSSQTK-TFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGD 111 (426)
Q Consensus 33 ~~~~~~s~~~-~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~ 111 (426)
+.+++.+.++ ......++++|.|++.+|......+ ....+..++.++........+.|...+. |+...+.+
T Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~-------p~~GG~y~ 80 (466)
T COG0531 9 ELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAI-------PSAGGAYA 80 (466)
T ss_pred hcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCCCeee
Confidence 4567788888 8899999999999999998877665 2223335666666666667777777655 34446667
Q ss_pred hHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCc-hhHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q 043105 112 LGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMS-AKGFYIWSCLPFQLGLNSIATLTHLAPLS 190 (426)
Q Consensus 112 l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~-~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 190 (426)
..++.+||+.++...+.+++.......+........+..+++........ ...+...+....+.-+...++.|..++++
T Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~ 160 (466)
T COG0531 81 YAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLLNLRGIKASAKIN 160 (466)
T ss_pred ehhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 79999999999999999999999998888888888888777742100001 12223334444445556678888888888
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhccC-Ccccc----ccCChhhHHHHHHHHHhhhccceeeccchhhcccc-ccchhhHHH
Q 043105 191 IFADVVDLAATAVVMVDEVVISLKQ-MPEVA----AFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKK-EKFGGILGL 264 (426)
Q Consensus 191 ~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~ 264 (426)
.......+...+............. ..... .......+..++....++|.|.+...+..+|+||| |+.+|++..
T Consensus 161 ~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~ 240 (466)
T COG0531 161 SIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIIL 240 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHH
Confidence 7777776665555544332221111 11111 11234568888899999999999999999999998 668999999
Q ss_pred HHHHHHHHHHHHHhHhhhhcCCc-cccc--------hhcccCCchHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcCC
Q 043105 265 SVTFIALMYVGFGVLGYFAFGSE-TKDI--------ITANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGG 335 (426)
Q Consensus 265 ~~~~~~~~Y~~~g~~gy~~fg~~-~~~~--------i~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~ 335 (426)
+...+.++|....+......+++ .... ........+...+..+...++.+.+.........+.+...-+++
T Consensus 241 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg 320 (466)
T COG0531 241 SLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDG 320 (466)
T ss_pred HHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999988888777753 1111 11111112444455555555555555444433333332222211
Q ss_pred ------------c-chhHHHHHHHHHHHHHHhhcC----CccchhhhhchhhhhhhHhHHHHHHHHHHhcc
Q 043105 336 ------------E-YCLWLRWLLVFLVSLVAMSVP----NFADFLSLVGSSVCCGLGFVLPALFHLLVFKE 389 (426)
Q Consensus 336 ------------~-~~~~~~~~~~~~~~~~a~~~~----~~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~~ 389 (426)
. .+...-.....+...+....+ .++.+.++ +.....+.|+++.+..++.+++
T Consensus 321 ~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~--~~~~~~~~y~~~~~~~~~~~~~ 389 (466)
T COG0531 321 LLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSL--ASVAFLIAYLLVALALLVLRRK 389 (466)
T ss_pred CccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence 1 111111111111121222222 24555665 3456678999999999888865
No 45
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.52 E-value=1.4e-10 Score=115.58 Aligned_cols=245 Identities=11% Similarity=-0.015 Sum_probs=154.6
Q ss_pred CCCCCChHHHHHHHHHHh-hhhhhchhhHH-HhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhh
Q 043105 34 PAPLSSQTKTFANVFIAI-VGAGVLGLPYA-FKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGD 111 (426)
Q Consensus 34 ~~~~~s~~~~~~~l~~s~-iG~Gil~lP~~-~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~ 111 (426)
-+|+.+.++.+..-++.+ +|.|+..+|.. ..+.|. ..+...++.++........+.|...+.+ .......
T Consensus 11 L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P-------~aGG~Y~ 82 (475)
T TIGR03428 11 LHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYP-------ISGAIYQ 82 (475)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCC-------CCCCHHH
Confidence 468899999999999885 89999988755 555665 4567777788888888888888888774 4445556
Q ss_pred hHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccc----cCCC-----chhHHHHHHHHHHHHHhhhhhh
Q 043105 112 LGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTST----ILGM-----SAKGFYIWSCLPFQLGLNSIAT 182 (426)
Q Consensus 112 l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~----~~~~-----~~~~~~~~i~~~~~~pl~~~~~ 182 (426)
.+++.+||+.++++.+.+++.......+........+..+.+... ++.. ..+.+.+.+...++.-+....+
T Consensus 83 ~~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g 162 (475)
T TIGR03428 83 WSRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIG 162 (475)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhh
Confidence 689999999999999998887665555545455555544322110 0000 1122233223333334445566
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhhhhhhhhccCC----ccc--cccCC-hhhHHHHHHHHHhhhccceeeccchhhcccc
Q 043105 183 LTHLAPLSIFADVVDLAATAVVMVDEVVISLKQM----PEV--AAFGN-LSVFFYGIGVAVYAFEGIGMVLPLEAEMEKK 255 (426)
Q Consensus 183 l~~l~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~--~~~~~-~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p 255 (426)
.|..++++.+.....+..+..++.........+. .+. ...++ ...+..+.....|+|.|.+......+|+|||
T Consensus 163 ~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP 242 (475)
T TIGR03428 163 VEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNP 242 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCc
Confidence 7777777766555444333332221111101000 000 01111 2345556667789999999999999999999
Q ss_pred -ccchhhHHHHHHHHHHHHHHHHhHhhhhcCC
Q 043105 256 -EKFGGILGLSVTFIALMYVGFGVLGYFAFGS 286 (426)
Q Consensus 256 -~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~ 286 (426)
|+.+|++..+..++.++|.+.-+......++
T Consensus 243 ~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~ 274 (475)
T TIGR03428 243 RRVAPRTILTALSVSALGGGLMILGALMAAPS 274 (475)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 5599999999998888777665555544443
No 46
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.51 E-value=8.5e-13 Score=130.77 Aligned_cols=347 Identities=14% Similarity=0.087 Sum_probs=233.3
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchh-hHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhh
Q 043105 33 KPAPLSSQTKTFANVFIAIVGAGVLGL-PYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGD 111 (426)
Q Consensus 33 ~~~~~~s~~~~~~~l~~s~iG~Gil~l-P~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~ 111 (426)
+-+|+.+.++-...-++++||+|++-. ..+.++.|...-++..++++.....+...+.|...+.|. ...++..
T Consensus 27 ~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~------~aGs~~~ 100 (554)
T KOG1286|consen 27 ELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPV------SAGSFYT 100 (554)
T ss_pred hhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheeccc------cccccee
Confidence 567899999999999999999998865 778888888888888889999999999999998888743 0245666
Q ss_pred hHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHh---------hccccCCCchhHHHHHHHHHHHHHhhhhhh
Q 043105 112 LGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFF---------RTSTILGMSAKGFYIWSCLPFQLGLNSIAT 182 (426)
Q Consensus 112 l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~---------~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~ 182 (426)
.+++..|+.+++.+.+.+++.....+.+.+...+..++.+. ++.+...+. ...+..++.+.+.......+
T Consensus 101 ya~~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~-~~fla~~v~in~~gv~~~ge 179 (554)
T KOG1286|consen 101 YAYRFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWI-PDFLAFILIINLFGVLAYGE 179 (554)
T ss_pred eeeeeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccH-HHHHHHHHHHHHHHHhhccc
Confidence 68999999999999999999999999999999999999986 221111111 11111122222222222244
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcc-CCc------ccccc--CChhhHHHHHHHHHhhhccceeeccchhhcc
Q 043105 183 LTHLAPLSIFADVVDLAATAVVMVDEVVISLK-QMP------EVAAF--GNLSVFFYGIGVAVYAFEGIGMVLPLEAEME 253 (426)
Q Consensus 183 l~~l~~~s~~~~~~~~~~~~~~i~~~~~~~~~-~~~------~~~~~--~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~ 253 (426)
.+....+..+-+...+..+.+++..+....+. ++. +...+ ..++++..++.+..|+|.|.+.+....+|.|
T Consensus 180 ~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~k 259 (554)
T KOG1286|consen 180 VEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAK 259 (554)
T ss_pred eeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 45544444444444444444444444332221 211 11111 1378899999999999999999999999999
Q ss_pred ccc-cchhhHHHHHHHHHHHHHHHHhHhhhh--cCC-ccccch------hcccCCchHHH---HHHHHHHHHHHhhhccc
Q 043105 254 KKE-KFGGILGLSVTFIALMYVGFGVLGYFA--FGS-ETKDII------TANLGAGFVSV---LVQLGLCINLFFTFPLM 320 (426)
Q Consensus 254 ~p~-~~~~~~~~~~~~~~~~Y~~~g~~gy~~--fg~-~~~~~i------~~~~~~~~~~~---~~~~~~~~~~~~s~pl~ 320 (426)
||+ ..++++..++..++.+|....+.--+. |.+ +..++. .......+.+. +.+.+.++.++++.-..
T Consensus 260 NP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~ 339 (554)
T KOG1286|consen 260 NPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSS 339 (554)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHH
Confidence 995 599999999999999999887665443 322 122211 10112223334 88899999999998888
Q ss_pred hhhHHHHHHHhhcCCcc-----------hhHHHHHHH-HHHHHHHhhcCC-----ccchhhhhchhhhhhhHhHHHHHHH
Q 043105 321 MHPVYEIVERRFKGGEY-----------CLWLRWLLV-FLVSLVAMSVPN-----FADFLSLVGSSVCCGLGFVLPALFH 383 (426)
Q Consensus 321 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~-~~~~~~a~~~~~-----~~~i~~~~G~~~~~~~~~ilP~l~~ 383 (426)
+++..+.+..+-++... +.+...+.. ++..+.+..... ++.++++.|. ++.+.+..=++.+
T Consensus 340 ~y~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si--~tl~~w~~i~~~~ 417 (554)
T KOG1286|consen 340 LYAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSI--GTLFAWTLVALSH 417 (554)
T ss_pred hHHhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhH--HHHHHHHHHHHHH
Confidence 89888888776543221 112222222 333344444332 5888888764 5677777777777
Q ss_pred HHHhc
Q 043105 384 LLVFK 388 (426)
Q Consensus 384 l~~~~ 388 (426)
++.++
T Consensus 418 i~~R~ 422 (554)
T KOG1286|consen 418 LRFRY 422 (554)
T ss_pred eeeee
Confidence 77764
No 47
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.47 E-value=2.4e-10 Score=114.24 Aligned_cols=244 Identities=11% Similarity=0.016 Sum_probs=142.9
Q ss_pred CCCCCChHHHHHHHHHHhhh--hhhch-hhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchh
Q 043105 34 PAPLSSQTKTFANVFIAIVG--AGVLG-LPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFG 110 (426)
Q Consensus 34 ~~~~~s~~~~~~~l~~s~iG--~Gil~-lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~ 110 (426)
.+|+.+.++.+...++. +| .|+.. .+.+..+.|....+...++.+++....+..+.|...+.+ +.....
T Consensus 10 l~r~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P-------~~Gg~y 81 (482)
T TIGR00907 10 LKREFSLWSIFGFAFSI-SNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYP-------TSGGQY 81 (482)
T ss_pred eecccchhHHHHHHHHH-HHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCC-------CCccHH
Confidence 46789999988888874 44 66654 455677777765577788888888888888889888774 445566
Q ss_pred hhHHHHhcc----cchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhcccc---CCCch-hHHHHHHHHHHHHHhhhhhh
Q 043105 111 DLGFVVCGS----IGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTI---LGMSA-KGFYIWSCLPFQLGLNSIAT 182 (426)
Q Consensus 111 ~l~~~~~G~----~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~---~~~~~-~~~~~~i~~~~~~pl~~~~~ 182 (426)
..+++.+|+ ..++++.+..++.....+.+.....++.+........+ +.... ....+.+....+.-+....+
T Consensus 82 ~~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g 161 (482)
T TIGR00907 82 FWSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHALINSLP 161 (482)
T ss_pred HHHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHHHHHHhh
Confidence 667888775 55777777777776666666666666666554321110 00011 11111122222233444556
Q ss_pred hhhhhHHHHHHHHHHHHHhhhh-h---hhhhhhhccC---C---cccc-cc-CChhhHHHHHHHHHhhhccceeeccchh
Q 043105 183 LTHLAPLSIFADVVDLAATAVV-M---VDEVVISLKQ---M---PEVA-AF-GNLSVFFYGIGVAVYAFEGIGMVLPLEA 250 (426)
Q Consensus 183 l~~l~~~s~~~~~~~~~~~~~~-i---~~~~~~~~~~---~---~~~~-~~-~~~~~~~~~~~~~~faf~~~~~i~~i~~ 250 (426)
.|..++++.......++...++ + .......... . .+.. .+ ++......++....|+|.|.+......+
T Consensus 162 ~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~ 241 (482)
T TIGR00907 162 TKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAE 241 (482)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHH
Confidence 6666666655443333222211 1 1110000000 0 0000 11 1112345556667899999999999999
Q ss_pred hcccc-ccchhhHHHHHHHHHHHHHHHHhHhhhhcC
Q 043105 251 EMEKK-EKFGGILGLSVTFIALMYVGFGVLGYFAFG 285 (426)
Q Consensus 251 ~m~~p-~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg 285 (426)
|+||| |+++|++..+..++.+++.+..+..+...+
T Consensus 242 E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~ 277 (482)
T TIGR00907 242 EIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMG 277 (482)
T ss_pred hcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999 559999999888777655444333333333
No 48
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.47 E-value=1.5e-10 Score=111.34 Aligned_cols=342 Identities=13% Similarity=0.083 Sum_probs=233.6
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhc-hhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhh
Q 043105 33 KPAPLSSQTKTFANVFIAIVGAGVL-GLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGD 111 (426)
Q Consensus 33 ~~~~~~s~~~~~~~l~~s~iG~Gil-~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~ 111 (426)
+-+|+...++....-++..||+|.+ +.-.+.+++|....++..++.|.+.+..+..+.|.....| ...++.+
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P-------~sGsF~~ 113 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYP-------VSGSFST 113 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------CCCchhh
Confidence 3678999999999999999999965 7889999999999999999999999999999999998874 4456888
Q ss_pred hHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHH-HHHHHHHHhhhhhhhhhhhH-H
Q 043105 112 LGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIW-SCLPFQLGLNSIATLTHLAP-L 189 (426)
Q Consensus 112 l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~-i~~~~~~pl~~~~~l~~l~~-~ 189 (426)
.+.+.-++-.++.+.+.+++....++...++..+..++.++++. .+...|..+ .+.++++-+.-.|...+..+ +
T Consensus 114 ya~rfvdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~----v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~ 189 (541)
T COG0833 114 YATRFVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDT----VPPWIWIAIFLVLIFLLNLFGVKGFGETEFWF 189 (541)
T ss_pred hhhhhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCC----CChHHHHHHHHHHHHHHHHhcccccceehHHH
Confidence 89999999999999999999999999999999999999998654 133444432 22333344444455555443 3
Q ss_pred HHHHHHHHHHHhh--hhhhhhhhhhccC------Ccccccc-CChhhHHHHHHHHHhhhccceeeccchhhcccccc-ch
Q 043105 190 SIFADVVDLAATA--VVMVDEVVISLKQ------MPEVAAF-GNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKEK-FG 259 (426)
Q Consensus 190 s~~~~~~~~~~~~--~~i~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~-~~ 259 (426)
|.+=.+.++..+. +++..+.... ++ ..+...+ +++.++...+-+..|||+|.+.+---..|-+||+| +|
T Consensus 190 s~iKV~~ii~Fii~gii~~~Gg~~~-~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iP 268 (541)
T COG0833 190 SSIKVLTIIGFIILGIIIICGGGPT-HGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIP 268 (541)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCC-CCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhH
Confidence 3332222222222 2222221111 11 1122222 35788888999999999999999999999999965 89
Q ss_pred hhHHHHHHHHHHHHHHHHhHh-hhh-cCCcc----------ccch---hcccCCchHHHHHHHHHHHHHHhhhccchhhH
Q 043105 260 GILGLSVTFIALMYVGFGVLG-YFA-FGSET----------KDII---TANLGAGFVSVLVQLGLCINLFFTFPLMMHPV 324 (426)
Q Consensus 260 ~~~~~~~~~~~~~Y~~~g~~g-y~~-fg~~~----------~~~i---~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~ 324 (426)
|++.-.+.-+.++|++.-++- ... |.|.. .+.. .+|.+-.....+.|...+.+++++---.++..
T Consensus 269 kAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYas 348 (541)
T COG0833 269 KAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYAS 348 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHH
Confidence 999999999999998543322 222 33311 1111 12222234567888889999999888888988
Q ss_pred HHHHHHhhcCCcchh-----------HHHHHHHHHHHHHHhh---cCC---ccchhhhhchhhhhhhHhHHHHHHHHHHh
Q 043105 325 YEIVERRFKGGEYCL-----------WLRWLLVFLVSLVAMS---VPN---FADFLSLVGSSVCCGLGFVLPALFHLLVF 387 (426)
Q Consensus 325 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~a~~---~~~---~~~i~~~~G~~~~~~~~~ilP~l~~l~~~ 387 (426)
.+.+..+-+++.-++ +..........++|.. .++ ++-++++.|. +.+++++--++.|++.+
T Consensus 349 SR~L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~--s~~i~W~~I~~shirFR 426 (541)
T COG0833 349 SRMLYSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGL--SGFIAWGSICLSHIRFR 426 (541)
T ss_pred HHHHHHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 889888876543211 1112222222222222 222 5556777664 45688888888999887
Q ss_pred c
Q 043105 388 K 388 (426)
Q Consensus 388 ~ 388 (426)
|
T Consensus 427 ~ 427 (541)
T COG0833 427 R 427 (541)
T ss_pred H
Confidence 5
No 49
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.38 E-value=1.6e-09 Score=108.10 Aligned_cols=239 Identities=10% Similarity=0.073 Sum_probs=129.0
Q ss_pred CCChHHHHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccccCCccccchhhhHHH
Q 043105 37 LSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTF-HCMMLLVHTRRKLESSEHGFTKINSFGDLGFV 115 (426)
Q Consensus 37 ~~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~-~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~ 115 (426)
|.+.++-+...+.++++ +-.+|.+ ++.|... ++..++.+++.. -.+....|..... |+.....+.+++
T Consensus 2 ~~~~~~l~~~~~~~v~~--~~~~~~~-a~~G~~~-~~~~~i~~~~~~ip~al~~aEL~~~~-------P~~GG~y~~~~~ 70 (474)
T TIGR03813 2 KLTVVTLAIMNITAVVS--LRGLPAE-AEYGLSA-AFYYLFAAIFFLVPVSLVAAELATAW-------PEKGGVFRWVGE 70 (474)
T ss_pred cccHHHHHHHHHHHHHH--hhcchHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHccC-------CCCCCceeeHhh
Confidence 46777777666666655 4466755 5677533 444444444333 3555666666655 344455566999
Q ss_pred HhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccc-cCCCchhHHH---HHHHHHHHHHhhhhhhhhhhhHHHH
Q 043105 116 VCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTST-ILGMSAKGFY---IWSCLPFQLGLNSIATLTHLAPLSI 191 (426)
Q Consensus 116 ~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~-~~~~~~~~~~---~~i~~~~~~pl~~~~~l~~l~~~s~ 191 (426)
.+|+++++...+.+++........-+......+..+.+... .+......+. ..+.....+.....+++|..++++.
T Consensus 71 a~G~~~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~ 150 (474)
T TIGR03813 71 AFGARWGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATVDESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAK 150 (474)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 99999999999888876543222111122222221111100 0011112222 1222222334456777877777765
Q ss_pred HHHHH-HHHHhhhh----hhhhhhhhc--cCCc--c-ccccCChhhHHHHHHHHHhhhccceeeccchhhcccc-ccchh
Q 043105 192 FADVV-DLAATAVV----MVDEVVISL--KQMP--E-VAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKK-EKFGG 260 (426)
Q Consensus 192 ~~~~~-~~~~~~~~----i~~~~~~~~--~~~~--~-~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~ 260 (426)
+.... .++..... +........ .+.. + .+...++.....+ ..+.|+|.|.+......+|+||| |+.+|
T Consensus 151 ~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~af~G~e~~~~~a~E~knP~r~iPr 229 (474)
T TIGR03813 151 WGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLA-ASIFLFYAGMEMNAVHVKDVDNPDKNYPI 229 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHH-HHHHHHHhchhHhHHHHHhccCcccchhH
Confidence 43221 11111111 111000000 0000 0 0111123333333 34578999999999999999999 56999
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhhcCCc
Q 043105 261 ILGLSVTFIALMYVGFGVLGYFAFGSE 287 (426)
Q Consensus 261 ~~~~~~~~~~~~Y~~~g~~gy~~fg~~ 287 (426)
++..+..++.++|++..+......+++
T Consensus 230 Ai~~~~~~~~~~y~l~~~~~~~~~~~~ 256 (474)
T TIGR03813 230 AILIAALGTVLIFVLGTLAIAFIIPRE 256 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCHh
Confidence 999999999999998776665555443
No 50
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.38 E-value=7.7e-10 Score=110.80 Aligned_cols=234 Identities=12% Similarity=0.037 Sum_probs=127.8
Q ss_pred CCCCCChHHHHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHH--HHHHHHHHHHHHhhccccCCccccchhh
Q 043105 34 PAPLSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTF--HCMMLLVHTRRKLESSEHGFTKINSFGD 111 (426)
Q Consensus 34 ~~~~~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~--~t~~~l~~~~~~~~~~~~~~~~~~~y~~ 111 (426)
++++.+.++.+...+.++. ++..+| .+++.|+. .+...+.+.+.+ -.+....|.....+. +......
T Consensus 2 ~~~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G~~--~i~~~i~~~l~~~lp~al~~AELas~~p~------~~GG~y~ 70 (507)
T TIGR00910 2 KAKKLSLFGFFAITASMVL--AVYEYP-TFATSGFH--LVFFLLLGGILWFIPVALCAAEMATVDGW------EEGGIFA 70 (507)
T ss_pred CCcEeeHHHHHHHHHHHHH--HHHhhH-HHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHcccCC------CCCCeee
Confidence 3567999999888888886 456888 46677743 344444444443 355666666655320 2234555
Q ss_pred hHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCc-hhHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q 043105 112 LGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMS-AKGFYIWSCLPFQLGLNSIATLTHLAPLS 190 (426)
Q Consensus 112 l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~-~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 190 (426)
.+++.+|++++++..+..++................+........ ...+ ...+...+.....+.+...++.|...+++
T Consensus 71 wv~~a~G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~~~-~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~ 149 (507)
T TIGR00910 71 WVSNTLGERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILKFPA-LNEDPIIKFIAALIIFWALAFSQFGGTKRTAKIA 149 (507)
T ss_pred ehhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 599999999999887777775543222222111111222211110 0001 11222222233334445667777777766
Q ss_pred HHHHHHHHHH-hhhhh---hhhhhhhcc---CCccccccCChh--hHHHHHHHHHhhhccceeeccchhhcccc-ccchh
Q 043105 191 IFADVVDLAA-TAVVM---VDEVVISLK---QMPEVAAFGNLS--VFFYGIGVAVYAFEGIGMVLPLEAEMEKK-EKFGG 260 (426)
Q Consensus 191 ~~~~~~~~~~-~~~~i---~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~ 260 (426)
.++.+..... .++++ ........+ +......++++. .....+....|+|.|.+......+|+||| |+++|
T Consensus 150 ~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~Pr 229 (507)
T TIGR00910 150 KAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYPL 229 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCcccccH
Confidence 5543322111 11111 011111000 000001111221 23334455689999999999999999999 56999
Q ss_pred hHHHHHHHHHHHHHHHHhH
Q 043105 261 ILGLSVTFIALMYVGFGVL 279 (426)
Q Consensus 261 ~~~~~~~~~~~~Y~~~g~~ 279 (426)
++..+.+++.++|.+..+.
T Consensus 230 Ai~~~~i~~~~l~~l~~~~ 248 (507)
T TIGR00910 230 AMILLMIAAICLDAIGGFS 248 (507)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999865543
No 51
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.37 E-value=2.3e-09 Score=107.47 Aligned_cols=240 Identities=13% Similarity=0.088 Sum_probs=136.9
Q ss_pred CCCCCChHHHHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccccCCccccchhhh
Q 043105 34 PAPLSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALT-FHCMMLLVHTRRKLESSEHGFTKINSFGDL 112 (426)
Q Consensus 34 ~~~~~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~-~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l 112 (426)
++|+.+.++.+...+++++|.+ .+|.++.+.|.. +++..++.+.+. ......+.|.....++ ........
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~------~aGG~Y~w 75 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKD------EKGGIYSW 75 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCC------CCCcHHHH
Confidence 3678999999999999999976 678888888864 344444444443 3355566777666531 13455566
Q ss_pred HHHHhcccchhHHHHHHHHHhhhhHHHHHHHH-HHhHHHHhhccc-----cCCCchh-HH-HHHHHHHHHHHhhhhhhhh
Q 043105 113 GFVVCGSIGRGIVDVLIILSQAGFCISYLMFI-ANTLVYFFRTST-----ILGMSAK-GF-YIWSCLPFQLGLNSIATLT 184 (426)
Q Consensus 113 ~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~-~~~l~~~~~~~~-----~~~~~~~-~~-~~~i~~~~~~pl~~~~~l~ 184 (426)
.++.+||+++++..+..+.............. .......++... ..+.... .. ...+..+...-....++++
T Consensus 76 ~~~~~G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~~ 155 (496)
T PRK15238 76 MNKSVGPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFLGLNSTQVVGILAVIWMILVTFVASKGIN 155 (496)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHccchH
Confidence 99999999998877654443332221111100 000011111110 0011111 11 2222222234455677888
Q ss_pred hhhHHHHHHHHHHHHH----h-hhhhhhhh-h-hhccCC--cc-----ccccCChhhHHHHHHHHHhhhccceeeccchh
Q 043105 185 HLAPLSIFADVVDLAA----T-AVVMVDEV-V-ISLKQM--PE-----VAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEA 250 (426)
Q Consensus 185 ~l~~~s~~~~~~~~~~----~-~~~i~~~~-~-~~~~~~--~~-----~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~ 250 (426)
..++++.++....+.. + +..+.... . ....+. .+ .+.+.+...+..++....|+|.|.+......+
T Consensus 156 ~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~ 235 (496)
T PRK15238 156 KIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVD 235 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 8888876544332211 1 11111100 0 000010 00 01111123466777888999999999999999
Q ss_pred hcccc-ccchhhHHHHHHHHHHHHHHHHhHhhh
Q 043105 251 EMEKK-EKFGGILGLSVTFIALMYVGFGVLGYF 282 (426)
Q Consensus 251 ~m~~p-~~~~~~~~~~~~~~~~~Y~~~g~~gy~ 282 (426)
|+||| |+++|++..+...+.++|.+..++...
T Consensus 236 E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~ 268 (496)
T PRK15238 236 KTENPEKNFPKGIIIAAIVISIGYSLAIFLWGV 268 (496)
T ss_pred hccCCCccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998 569999999999999999987554433
No 52
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.25 E-value=7.4e-11 Score=117.86 Aligned_cols=269 Identities=15% Similarity=0.140 Sum_probs=175.5
Q ss_pred HHHHHhhhhhhc-hhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhHHHHhcccchhH
Q 043105 46 NVFIAIVGAGVL-GLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGFVVCGSIGRGI 124 (426)
Q Consensus 46 ~l~~s~iG~Gil-~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~i 124 (426)
..+++++|+|++ ..+.+..+.|....++..++.++....+...+.|..++. |+...+.+.+++.+|+..+..
T Consensus 5 ~~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~-------p~~Gg~y~y~~~~lg~~~Gf~ 77 (478)
T PF00324_consen 5 ISIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRF-------PSAGGFYAYASRGLGPALGFA 77 (478)
T ss_pred eeHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhh-------ccccchhhhhhhccCCcCCce
Confidence 346788999976 457788899987778899999999999999999988887 455567777999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhHHHH--hhccc-cCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHh
Q 043105 125 VDVLIILSQAGFCISYLMFIANTLVYF--FRTST-ILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFADVVDLAAT 201 (426)
Q Consensus 125 ~~~~~~~~~~g~~~~y~i~~~~~l~~~--~~~~~-~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~ 201 (426)
..+.+++.............+..++.+ .++.. .+.+.. ++ .....+........+.|....++.......+..+
T Consensus 78 ~gw~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~l 154 (478)
T PF00324_consen 78 AGWAYWLSYIAAIAAEATAAGSFLQFWGYFPGLPSTWVWGI--LI-AIIFILLITLLNLFGVRVSGKIEFILTIIKLIAL 154 (478)
T ss_pred eeHHHHHHHHHHHHhhhhhhhhhhccccccccccccccccc--hh-hhhhhhhhhhhhhhhhhccchHHHHHHHHhhhHh
Confidence 999998888888888888777777766 44332 111111 11 1222222223344556666655544443333333
Q ss_pred hhhhhhh-hh--hhccCCcc------------c------cccCChhhHHHHHHHHHhhhccceeeccchhhccccc-cch
Q 043105 202 AVVMVDE-VV--ISLKQMPE------------V------AAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKE-KFG 259 (426)
Q Consensus 202 ~~~i~~~-~~--~~~~~~~~------------~------~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~ 259 (426)
+..+... .. ....+..+ . +...++.++..++....++|.|.+......+|.|||| +++
T Consensus 155 i~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IP 234 (478)
T PF00324_consen 155 IAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIP 234 (478)
T ss_pred hhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhhhh
Confidence 3222222 10 00000000 0 0111367899999999999999999999999999995 599
Q ss_pred hhHHHHHHHHHHHHHHHHhHhhhhcCCccccch------------hcccCCchHHHHHHHHHHHHHHhhhccchhhH
Q 043105 260 GILGLSVTFIALMYVGFGVLGYFAFGSETKDII------------TANLGAGFVSVLVQLGLCINLFFTFPLMMHPV 324 (426)
Q Consensus 260 ~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~i------------~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~ 324 (426)
|++..++..+.++|.......-...+.+..+.. .+.....+...+.+++...+.+.+..-.++..
T Consensus 235 ra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~ 311 (478)
T PF00324_consen 235 RATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANASLYAA 311 (478)
T ss_pred hHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhhhhhhccc
Confidence 999999999999999888877766665442211 11122234445555555555555444444433
No 53
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.99 E-value=8.4e-07 Score=80.37 Aligned_cols=215 Identities=15% Similarity=0.118 Sum_probs=129.8
Q ss_pred HHHHHHHHHHhhhhhhchh---hHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhHHHHh
Q 043105 41 TKTFANVFIAIVGAGVLGL---PYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGFVVC 117 (426)
Q Consensus 41 ~~~~~~l~~s~iG~Gil~l---P~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~ 117 (426)
.+-.+..+++++|+|.-+= =.-|.+-|+.. ....++.+.+-..++..+.+..++.++. +|.|..++.+
T Consensus 6 ~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~s-~~gIivs~vlf~~~g~vim~ig~~f~a~--------~y~~~~~~v~ 76 (349)
T COG3949 6 MRWAFAFIGTVVGAGFASGQEIMQFFGKYGVYS-ILGIILSTVLFTLSGAVIMTIGKKFNAT--------SYREILKYVS 76 (349)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHhccc--------chHHHHHHHh
Confidence 4456777889999995442 12344566654 5666777777788888888888887555 9999999999
Q ss_pred cccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHH-HHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 043105 118 GSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYI-WSCLPFQLGLNSIATLTHLAPLSIFADVV 196 (426)
Q Consensus 118 G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~-~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 196 (426)
||+...+.|....++.++.++.-....+..+++.++- ..|.- ++.......+.++++.+.+-.+..+-+..
T Consensus 77 ~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~l--------P~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P~ 148 (349)
T COG3949 77 GPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGL--------PYWIGALIIILLVLILLFLGRVEGIITVNGIITPF 148 (349)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhCc--------cHHHHHHHHHHHHHHHHHHhcccceeeeheeHHHH
Confidence 9999999999999999999999888888888777554 23443 22333333344566677776665554444
Q ss_pred HHHHhhhhhh-hhhhhhccCCccccc-cCChhhHHHHHHHHHhhh-ccceeeccchhhccccccchhhHHHHHHHHHHHH
Q 043105 197 DLAATAVVMV-DEVVISLKQMPEVAA-FGNLSVFFYGIGVAVYAF-EGIGMVLPLEAEMEKKEKFGGILGLSVTFIALMY 273 (426)
Q Consensus 197 ~~~~~~~~i~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf-~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~~~Y 273 (426)
.+.....+.. +.+.......+.... -++|+. .+.+-..+.. .+...+.++-++||+++.-.+....+-++.+++-
T Consensus 149 LIi~l~~v~~~~~f~~~~~~a~~~~~~~~~W~~--~~~~Y~alNi~~~~avLv~lg~~~~~~~~~~~g~l~gglIlgvl~ 226 (349)
T COG3949 149 LIIILVLVTLSFQFTNLGNAAQIVLTKQGNWKA--SAVGYGALNILVAVAVLVPLGGRMESRKVSGIGGLIGGLILGVLL 226 (349)
T ss_pred HHHHHHHHHHHHHHhhccchhhhcCCcCCChHH--HHHhhhhHHHHhHhHhhhhhcccccccchhhhhhhhhhHHHHHHH
Confidence 4443332221 222111111111111 112322 2222223333 2355667777999998776655444443333333
Q ss_pred H
Q 043105 274 V 274 (426)
Q Consensus 274 ~ 274 (426)
.
T Consensus 227 ~ 227 (349)
T COG3949 227 F 227 (349)
T ss_pred H
Confidence 3
No 54
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.97 E-value=1.8e-07 Score=90.33 Aligned_cols=367 Identities=13% Similarity=0.094 Sum_probs=180.4
Q ss_pred CCCCCChHHHHHHHHHHh---hhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchh
Q 043105 34 PAPLSSQTKTFANVFIAI---VGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFG 110 (426)
Q Consensus 34 ~~~~~s~~~~~~~l~~s~---iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~ 110 (426)
-+|.-++++.+..-++.+ -|. .-++.+.....|...-.-..++++..+...+.-++|..+.+|+ .....
T Consensus 46 f~R~fs~~s~fg~sFs~~g~~~~i-~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~Pt-------sGgLy 117 (550)
T KOG1289|consen 46 LKREFSLFSIFGISFSLMGLLPGI-ATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPT-------SGGLY 117 (550)
T ss_pred hhhhhhHHHHHHHHHHHhcchhhh-hhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCC-------CCcHH
Confidence 467777776664433322 211 1134445554454443444677788888888888888887753 33443
Q ss_pred hhHHHHhcccchhHH----HHHHHHHhhhhHHHHHHHHHHhHHHHhhcccc-C-CCchhHHHHHHHHHHHHHhhhhhhhh
Q 043105 111 DLGFVVCGSIGRGIV----DVLIILSQAGFCISYLMFIANTLVYFFRTSTI-L-GMSAKGFYIWSCLPFQLGLNSIATLT 184 (426)
Q Consensus 111 ~l~~~~~G~~~~~i~----~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~-~-~~~~~~~~~~i~~~~~~pl~~~~~l~ 184 (426)
--+...-+|+.+.+. .+...+.+.....+-.-..++.+.....-.++ . ..+.+.+.+.....++.-+......|
T Consensus 118 ~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v~~lln~~p~r 197 (550)
T KOG1289|consen 118 FWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFVHGLLNSLPTR 197 (550)
T ss_pred HHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCCcccceEeehHHHHHHHHHHHHhcCCcH
Confidence 344455555554444 43443333333333333333333333222221 1 11112222222222222222333345
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhhh--c----------cCCccccccC-ChhhHHHHHHHHHhhhccceeeccchhh
Q 043105 185 HLAPLSIFADVVDLAATAVVMVDEVVIS--L----------KQMPEVAAFG-NLSVFFYGIGVAVYAFEGIGMVLPLEAE 251 (426)
Q Consensus 185 ~l~~~s~~~~~~~~~~~~~~i~~~~~~~--~----------~~~~~~~~~~-~~~~~~~~~~~~~faf~~~~~i~~i~~~ 251 (426)
.+++++.+++...++.+++.++.-.... . ....+...++ ....+..++-...+.+.|....+++.+|
T Consensus 198 ~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE 277 (550)
T KOG1289|consen 198 VLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEE 277 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHH
Confidence 5555555555555444443332211110 0 0011122222 3456666778888999999999999999
Q ss_pred cccc-ccchhhHHHHHHHHHHHHHHHHhHhhhhcCCccccchhccc------------CCchHHHHHHHHHHHHHHhhhc
Q 043105 252 MEKK-EKFGGILGLSVTFIALMYVGFGVLGYFAFGSETKDIITANL------------GAGFVSVLVQLGLCINLFFTFP 318 (426)
Q Consensus 252 m~~p-~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~i~~~~------------~~~~~~~~~~~~~~~~~~~s~p 318 (426)
.||+ ++.+|.+..+..+..++=..+-+.-..+.+++...-.-.+. ++... .....+..+.++..-.
T Consensus 278 ~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~-v~~~~l~ii~~f~~gi 356 (550)
T KOG1289|consen 278 TKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGA-VFLLSLIIIALFFMGI 356 (550)
T ss_pred hcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCce-EehhHHHHHHHHHhhH
Confidence 9998 56899999999888888887777777777754332222222 22111 1111111111111111
Q ss_pred cchhhHHHHHHHhhcCC---------------cchhHHHHHHHHHHHHHHhh-cCC---ccchhhhhchhhhhhhHhHHH
Q 043105 319 LMMHPVYEIVERRFKGG---------------EYCLWLRWLLVFLVSLVAMS-VPN---FADFLSLVGSSVCCGLGFVLP 379 (426)
Q Consensus 319 l~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~a~~-~~~---~~~i~~~~G~~~~~~~~~ilP 379 (426)
..+....+.....-++. +.+....+..++.+.++.+. .++ ++.+++. +.....+.|..|
T Consensus 357 ~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Alfs~--a~i~l~~Ay~iP 434 (550)
T KOG1289|consen 357 SSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNALFSA--AAIALFIAYAIP 434 (550)
T ss_pred HHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHh
Confidence 11111112222211111 11122333444444444433 355 5566665 556778999999
Q ss_pred HHHHHHHhcccc-------chHHHHHHHHHHHHHHHHHH
Q 043105 380 ALFHLLVFKEEM-------GWKGWFLDVGIVVVGVVFGV 411 (426)
Q Consensus 380 ~l~~l~~~~~~~-------~~~~~~~~~~~~~~g~~~~v 411 (426)
..+.+...|++. +++.+...++.+++-+++.+
T Consensus 435 ~~~rlf~~r~~f~~gp~~lGk~s~p~~~i~v~w~lf~~v 473 (550)
T KOG1289|consen 435 IFCRLFFGRDDFRPGPFNLGKFSKPIGIIAVLWVLFMIV 473 (550)
T ss_pred HHhheeecccccCCCCccccccccchHHHHHHHHHHHHH
Confidence 999998887531 22334455555555555444
No 55
>PRK11375 allantoin permease; Provisional
Probab=98.90 E-value=6.8e-06 Score=81.71 Aligned_cols=328 Identities=12% Similarity=-0.005 Sum_probs=163.9
Q ss_pred CCCCCCCChHHHHHHHHHHh-------hhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCc
Q 043105 32 GKPAPLSSQTKTFANVFIAI-------VGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFT 104 (426)
Q Consensus 32 ~~~~~~~s~~~~~~~l~~s~-------iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~ 104 (426)
++++|+-++++-+..-.+.. +++|.+. ...++..+++..++..++...-..+......+
T Consensus 21 p~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~-----~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~--------- 86 (484)
T PRK11375 21 TQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFI-----LGLSTFSIMLAIILSAFFIAAVMVLNGAAGSK--------- 86 (484)
T ss_pred CccccCCcHHHHHHHHHHHhccHHHHHHHHHHHH-----ccchHHHHHHHHHHHHHHHHHHHHHhcccccc---------
Confidence 34456666655554444333 3333332 23445556666666655555545444444444
Q ss_pred cccchhhhHHHHhcccchhHHHHHHH-HHhhhhHHHHHHHHHHhHHHHhhcc----cc-------CCCchhHHH-HHHHH
Q 043105 105 KINSFGDLGFVVCGSIGRGIVDVLII-LSQAGFCISYLMFIANTLVYFFRTS----TI-------LGMSAKGFY-IWSCL 171 (426)
Q Consensus 105 ~~~~y~~l~~~~~G~~~~~i~~~~~~-~~~~g~~~~y~i~~~~~l~~~~~~~----~~-------~~~~~~~~~-~~i~~ 171 (426)
...++.-++|..||+++..+..+... +..++-...-....++.+..++... .. .+.....+. ..+..
T Consensus 87 ~Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~ 166 (484)
T PRK11375 87 YGVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFW 166 (484)
T ss_pred cCCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHH
Confidence 34488889999999999888888874 4556655555666666666443221 10 111111222 22333
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhhhhhhhhhhhc-----cC-Cc-cccccCChhhHHHHHHHHHhhhc-cce
Q 043105 172 PFQLGLNSIATLTHLAPLSIFADVVDLAATAVVMVDEVVISL-----KQ-MP-EVAAFGNLSVFFYGIGVAVYAFE-GIG 243 (426)
Q Consensus 172 ~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~i~~~~~~~~-----~~-~~-~~~~~~~~~~~~~~~~~~~faf~-~~~ 243 (426)
++..+.. ..+.+.+++++.++........+........... .. +. ..........+..++...+=++. ...
T Consensus 167 ~l~~~~~-~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~ 245 (484)
T PRK11375 167 LVNVGIG-FGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAV 245 (484)
T ss_pred HHHHHHH-HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHc
Confidence 4444443 4455666655555554443333322222111110 00 00 00001112344445444444444 456
Q ss_pred eeccchhhccccccchhhHHHHHHHHHHHHHHHHhHh----hhhcCCcccc--chhcccCCchHHHHHHHHHHHHHHhh-
Q 043105 244 MVLPLEAEMEKKEKFGGILGLSVTFIALMYVGFGVLG----YFAFGSETKD--IITANLGAGFVSVLVQLGLCINLFFT- 316 (426)
Q Consensus 244 ~i~~i~~~m~~p~~~~~~~~~~~~~~~~~Y~~~g~~g----y~~fg~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~s- 316 (426)
+.|.+.|..|++++..+....+..+...+...+|+.. ...+|+...+ +++.++++......+.+.+.++..++
T Consensus 246 ~~~D~tRy~k~~~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~~~~~~~~a~l~~v~a~~~tN 325 (484)
T PRK11375 246 SASDFTQNAHSFRAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWDSLFASFFAVLVILMTTISTN 325 (484)
T ss_pred cccchhcccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 8899999999998877777777777776665555443 4456654332 23333333233333344444544444
Q ss_pred hccchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHHHhh--cCC---ccchhhhhchhhhhhh
Q 043105 317 FPLMMHPVYEIVERRFKGGEYCLWLRWLLVFLVSLVAMS--VPN---FADFLSLVGSSVCCGL 374 (426)
Q Consensus 317 ~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~~~---~~~i~~~~G~~~~~~~ 374 (426)
.....++.-..+.+.+.++..++....+.-++..+++.. +.+ +...+++.|++.+.+.
T Consensus 326 ~~~N~ys~~~~l~~l~pk~i~~~~~~~i~~iig~~~~pw~~~~~~~~f~~FL~~lg~~l~Pi~ 388 (484)
T PRK11375 326 ATGNIIPAGYQIAALAPTKLTYKNGVLIASIISLLICPWKLMENQDSIYLFLDIIGGMLGPVI 388 (484)
T ss_pred HHhhcccHHHHHHHhCcCccchhhHHHHHHHHHHHhccHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 335667777777777754322222222222233333322 223 5556666666554433
No 56
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.85 E-value=6.2e-08 Score=81.01 Aligned_cols=218 Identities=18% Similarity=0.241 Sum_probs=139.3
Q ss_pred CChHHHHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---------c-cC-----
Q 043105 38 SSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESS---------E-HG----- 102 (426)
Q Consensus 38 ~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~---------~-~~----- 102 (426)
.|..-....++|-++|+|.|++|.+|+.+||.+++.++...+..++.+...++++....+.+ + |+
T Consensus 12 ysq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~s 91 (319)
T KOG3832|consen 12 YSQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDES 91 (319)
T ss_pred hhhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhcccccc
Confidence 44445667888999999999999999999999999999999999999999888865543332 1 00
Q ss_pred ----------------------------------CccccchhhhHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhH
Q 043105 103 ----------------------------------FTKINSFGDLGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTL 148 (426)
Q Consensus 103 ----------------------------------~~~~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l 148 (426)
..++.+.+|++...|.|.+-.+.-++++++++|-..+|....--..
T Consensus 92 tasd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~ 171 (319)
T KOG3832|consen 92 TASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSA 171 (319)
T ss_pred ccCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHh
Confidence 0123356677778999999999999999999999999986655443
Q ss_pred HHHh----hccc----------c----CCC-----chhHHHHH-HHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhhh
Q 043105 149 VYFF----RTST----------I----LGM-----SAKGFYIW-SCLPFQLGLNSIATLTHLAPLSIFADVVDLAATAVV 204 (426)
Q Consensus 149 ~~~~----~~~~----------~----~~~-----~~~~~~~~-i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~ 204 (426)
-++. +..+ + |+- ...++++. ...++++|+.+ -+++.-+.++.+..+..-......
T Consensus 172 m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf-~diqktk~iqiltslmrw~~~~~g 250 (319)
T KOG3832|consen 172 MNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTF-ADIQKTKHIQILTSLMRWAAFILG 250 (319)
T ss_pred hhhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeE-eccccchhHHHHHHHHHHHhccch
Confidence 3331 1111 0 111 11223333 33444456654 356666777777666554433333
Q ss_pred hhhhhhhhccCC-ccccccCChhhHHHHHHHHHhhhccceeeccchhhccccc
Q 043105 205 MVDEVVISLKQM-PEVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKE 256 (426)
Q Consensus 205 i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~ 256 (426)
+.....+...+. +..+.-..+-++-+.++..+|+|.+|.+.|.....++.+.
T Consensus 251 ~~l~tmqaeedaa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k~ 303 (319)
T KOG3832|consen 251 ISLATMQAEEDAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTKD 303 (319)
T ss_pred hhhhhhhhcccccccCCccccccccccccchhhHHHHhhccCCCCCCCCeecc
Confidence 322222211111 1111111233445567788999999999999888776553
No 57
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.81 E-value=1.5e-05 Score=78.68 Aligned_cols=291 Identities=12% Similarity=-0.048 Sum_probs=163.6
Q ss_pred CCCCChHHHHHHHHHHhhhhhhchhhHHHhc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhh
Q 043105 35 APLSSQTKTFANVFIAIVGAGVLGLPYAFKR--TGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDL 112 (426)
Q Consensus 35 ~~~~s~~~~~~~l~~s~iG~Gil~lP~~~~~--~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l 112 (426)
+|+.+.++-+..-.+..+....+.+...... .++..+++..++...+...-..+......|+ ..++..+
T Consensus 11 ~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~---------Gl~~~v~ 81 (442)
T TIGR00800 11 ERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKY---------GLPFPVL 81 (442)
T ss_pred cCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHh---------CCCcchh
Confidence 4455766666665555555444444333222 4555666666666666555555555555554 3377888
Q ss_pred HHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCC--c-----hhHHHHHHHHHHHHHhhhhhhhhh
Q 043105 113 GFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGM--S-----AKGFYIWSCLPFQLGLNSIATLTH 185 (426)
Q Consensus 113 ~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~--~-----~~~~~~~i~~~~~~pl~~~~~l~~ 185 (426)
+|..||+++..+..++..+...|-........++.+..++....+... . .......+...+.+++......+.
T Consensus 82 sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~ 161 (442)
T TIGR00800 82 SRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKI 161 (442)
T ss_pred hhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 999999999999999999999999999999999888777665432110 1 112222344444455445555555
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhh---hc--cCCccccccCChhhHHHHHHHHH-hhhccceeeccchhhccccccch
Q 043105 186 LAPLSIFADVVDLAATAVVMVDEVVI---SL--KQMPEVAAFGNLSVFFYGIGVAV-YAFEGIGMVLPLEAEMEKKEKFG 259 (426)
Q Consensus 186 l~~~s~~~~~~~~~~~~~~i~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~-faf~~~~~i~~i~~~m~~p~~~~ 259 (426)
.......+....+..+...++..... .+ ....+.........+..++.... +.-....+.+.+.+.+|+|++-.
T Consensus 162 ~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~~~~ 241 (442)
T TIGR00800 162 RHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKKTAI 241 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCccchH
Confidence 55555555444333333332221111 00 01110011112345555555533 33355678899999999988777
Q ss_pred hhHHHHHHHHHHHHHHHHhHhhhh----cCCcccc--chhcccCCchHHHHHH------HHHHHHHH-hhhccchhhHHH
Q 043105 260 GILGLSVTFIALMYVGFGVLGYFA----FGSETKD--IITANLGAGFVSVLVQ------LGLCINLF-FTFPLMMHPVYE 326 (426)
Q Consensus 260 ~~~~~~~~~~~~~Y~~~g~~gy~~----fg~~~~~--~i~~~~~~~~~~~~~~------~~~~~~~~-~s~pl~~~~~~~ 326 (426)
+....+..........+|..+-.. +|+...+ +....+.......... ++..+..+ +.-....++...
T Consensus 242 ~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~~~vl~~~~t~~~~N~ys~~l 321 (442)
T TIGR00800 242 WGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWSPLDILARFLGLTYAVGARAVFGFGFCFVVAQLSTNISANSYSAGL 321 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhccchHH
Confidence 778888888888888888887765 7765333 2233333222111111 22222222 344556666666
Q ss_pred HHHHhhcC
Q 043105 327 IVERRFKG 334 (426)
Q Consensus 327 ~~~~~~~~ 334 (426)
.+.+.+.+
T Consensus 322 ~l~~l~~~ 329 (442)
T TIGR00800 322 DIAALLPK 329 (442)
T ss_pred HHHHhCcC
Confidence 67766643
No 58
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.76 E-value=2.6e-05 Score=75.41 Aligned_cols=251 Identities=12% Similarity=-0.053 Sum_probs=144.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHH
Q 043105 66 TGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIA 145 (426)
Q Consensus 66 ~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~ 145 (426)
.++..+++..++...+...-..+......+ ...++.-++|..||+++..+..+...+...|-........+
T Consensus 26 L~~~~ai~aiilG~~i~~~~~~l~~~~G~~---------~Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg 96 (386)
T TIGR02358 26 LGLTRGLLAILLGHLVGVLLLSAAGVIGAD---------TGLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGA 96 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhcc---------cCcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666665555555444444444444 33478888999999999999999999999998888888899
Q ss_pred HhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhhhhhhhhhhhccCCccccccCCh
Q 043105 146 NTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFADVVDLAATAVVMVDEVVISLKQMPEVAAFGNL 225 (426)
Q Consensus 146 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 225 (426)
+.++.+.+...+. ........+...+..+. ...+.+.++++..++........+...+......+.+.... ...+
T Consensus 97 ~~l~~~~~~~~~~--~~~~~~~~i~~~l~~~~-~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~- 171 (386)
T TIGR02358 97 KAASLLGGRLFGE--ESPMLWILIVGILVTLW-LLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSELWN-RAGD- 171 (386)
T ss_pred HHHHHHHHHhcCC--CchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcC-CCCC-
Confidence 9998887653211 11111222222222322 23466666666666666555554443322221111000000 0011
Q ss_pred hhHHHHHHHHH-hhhccceeeccchhhccccccchhhHHHHHHHHHHHHHHHHhHhhhhcCCccccchhcccCCchHHHH
Q 043105 226 SVFFYGIGVAV-YAFEGIGMVLPLEAEMEKKEKFGGILGLSVTFIALMYVGFGVLGYFAFGSETKDIITANLGAGFVSVL 304 (426)
Q Consensus 226 ~~~~~~~~~~~-faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~i~~~~~~~~~~~~ 304 (426)
..+..++.... +.-......+.+.+..|+|+|..+....+..+...+...+|.....+.++....++....+ ....
T Consensus 172 ~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~d~~~~~~~~g---~~~~ 248 (386)
T TIGR02358 172 MSFAVAVELVIAMPLSWLPLIADYTRFARNPRHVFLGTVLGYFIGSCWMYFLGLAVTLATGQTDIISILAGAG---LGIP 248 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHccchhhhcCCCcceehHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcc---HHHH
Confidence 22222332222 1123344589999999998888888888999999999999988877776542222222211 1122
Q ss_pred HHHHHHHHHHhhhccchhhHHHHHHHhhc
Q 043105 305 VQLGLCINLFFTFPLMMHPVYEIVERRFK 333 (426)
Q Consensus 305 ~~~~~~~~~~~s~pl~~~~~~~~~~~~~~ 333 (426)
.-+...++..++-....++.-..+.+.+.
T Consensus 249 ~~~~~~l~~~~~n~~N~ys~~l~l~~l~~ 277 (386)
T TIGR02358 249 ALLIILLSTVTTTFMDIYSAAISTGNLLP 277 (386)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555556666666666666663
No 59
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.54 E-value=0.00039 Score=68.09 Aligned_cols=147 Identities=14% Similarity=0.037 Sum_probs=95.2
Q ss_pred CCCCChHHHHHHHHHHhhhhh-hchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhH
Q 043105 35 APLSSQTKTFANVFIAIVGAG-VLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLG 113 (426)
Q Consensus 35 ~~~~s~~~~~~~l~~s~iG~G-il~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~ 113 (426)
.|+.+.+...+.+..+.+|++ .++.|....+.|+.. +...+..............+..++ .+..+.+|+.
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~T~~e~l 72 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAI-GFYELGALVLLIILGWLFVPIFIN--------NGAYTMPEYL 72 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH--------cCCCchhHHH
Confidence 467888888888888888877 557888777778543 222222222222333444443333 3567999999
Q ss_pred HHHhccc-chhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 043105 114 FVVCGSI-GRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIF 192 (426)
Q Consensus 114 ~~~~G~~-~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 192 (426)
++.||++ .+.+..+...+..+......+...+..++.+++- + .....++...++.......+++...+...+
T Consensus 73 ~~Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi------~-~~~~~ii~~~i~~~Yt~~GG~~av~~Td~i 145 (407)
T TIGR00813 73 EKRFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITGL------D-LYLSLLLLGAITILYTVFGGLKAVVWTDTI 145 (407)
T ss_pred HHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------h-HHHHHHHHHHHHHHHHHHcchHHHHHHHHH
Confidence 9999985 6666667777777778888888888888877642 1 222333444555566777888887776655
Q ss_pred HHHHH
Q 043105 193 ADVVD 197 (426)
Q Consensus 193 ~~~~~ 197 (426)
=.+.+
T Consensus 146 Q~~i~ 150 (407)
T TIGR00813 146 QAVIM 150 (407)
T ss_pred HHHHH
Confidence 44443
No 60
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.52 E-value=0.00014 Score=70.17 Aligned_cols=252 Identities=13% Similarity=-0.049 Sum_probs=141.3
Q ss_pred chhhhHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhh
Q 043105 108 SFGDLGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLA 187 (426)
Q Consensus 108 ~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 187 (426)
+--.++|..||.++.++..+.+.+.+.|-.....+..++..-.. +. ....+.+++..++.. +...=+.+.+.
T Consensus 82 pqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-~~------~~~~~~ili~g~l~~-l~~ifG~r~l~ 153 (442)
T COG1457 82 PQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-TG------LPVWAGILIIGVLMT-LVTIFGYRALH 153 (442)
T ss_pred ChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-CC------CcHHHHHHHHHHHHH-HHHHHhHHHHH
Confidence 33345889999999999999999999999999888888872221 11 122233322222222 22222444444
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhh-hccCCccccccCChhhHHHHHHHHHhhh-ccceeeccchhhccccc--cchhhHH
Q 043105 188 PLSIFADVVDLAATAVVMVDEVVI-SLKQMPEVAAFGNLSVFFYGIGVAVYAF-EGIGMVLPLEAEMEKKE--KFGGILG 263 (426)
Q Consensus 188 ~~s~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~i~~i~~~m~~p~--~~~~~~~ 263 (426)
.++..+............+..... ..........+.++.++..+++...=.+ ...+....+.+.+|+|+ |.-....
T Consensus 154 ~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~~~ 233 (442)
T COG1457 154 KLERIAVPLLLLLFLYLLALLFRSKGGLDALWVKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLAAV 233 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccceeeccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHHHH
Confidence 444444444433333333322221 1111111112334455555554433333 55677788888888877 6666677
Q ss_pred HHHHHHHHHHHHHHhHhhhhcCCcc-ccchhcccCCchHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcC-CcchhHH
Q 043105 264 LSVTFIALMYVGFGVLGYFAFGSET-KDIITANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKG-GEYCLWL 341 (426)
Q Consensus 264 ~~~~~~~~~Y~~~g~~gy~~fg~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~-~~~~~~~ 341 (426)
.+..+....-.+.|.+.-.+-|+.. ..+....+++ +...+.+...++..++-...+++..-.+.+...+ +|.+...
T Consensus 234 ~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~--~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~~l~k~~~~v 311 (442)
T COG1457 234 LGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG--FGLPAILILVLGTVTTNANNLYSAGLSFANIIPKLSKVTRVV 311 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc--HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 7888888888888999888888776 4444444443 4455556666666777677777766666666553 2222221
Q ss_pred HHHHHHHHHHHHhhcC----Cccchhhhhchhh
Q 043105 342 RWLLVFLVSLVAMSVP----NFADFLSLVGSSV 370 (426)
Q Consensus 342 ~~~~~~~~~~~a~~~~----~~~~i~~~~G~~~ 370 (426)
-..+. +..++++..| +++..+.++|+..
T Consensus 312 ~~~v~-igt~la~~~~~f~~~f~~Fl~~i~~~i 343 (442)
T COG1457 312 IAGVG-IGTLLALAGPFFYNFFENFLLLLGYFI 343 (442)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 4455555544 4555555555533
No 61
>PRK12488 acetate permease; Provisional
Probab=98.51 E-value=0.0014 Score=66.57 Aligned_cols=149 Identities=10% Similarity=0.009 Sum_probs=94.7
Q ss_pred CCCCCChHHHHHHHHHHhhhhh-hchhhHHHhccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccccCCccccchhh
Q 043105 34 PAPLSSQTKTFANVFIAIVGAG-VLGLPYAFKRTGWLMGSLMIISVSALTFHC-MMLLVHTRRKLESSEHGFTKINSFGD 111 (426)
Q Consensus 34 ~~~~~s~~~~~~~l~~s~iG~G-il~lP~~~~~~G~~~g~i~l~~~~~~~~~t-~~~l~~~~~~~~~~~~~~~~~~~y~~ 111 (426)
..|+.+++...+.+..+.++++ .++.|....+.|+..-+. .+...+.+.- ..++.+-.++. +..|.+|
T Consensus 65 aGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~~~~--~~g~~~g~~~~~~~~a~~lr~~--------g~~T~~d 134 (549)
T PRK12488 65 AGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDGLLY--ALGVLAGWPIILFLIAERLRNL--------GKYTFAD 134 (549)
T ss_pred eCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHH--HHHHHHHHHHHHHHHHHHHHHC--------CCcchHH
Confidence 4688999999999999988888 468898777778643111 1111111111 12233333332 5579999
Q ss_pred hHHHHhc-ccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q 043105 112 LGFVVCG-SIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLS 190 (426)
Q Consensus 112 l~~~~~G-~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 190 (426)
..++.|| |+.+.+..+...+....-...-+...+..++.+++- + ....+++..++........+++...+..
T Consensus 135 ~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi------~-~~~~iii~~~i~~~Yt~~GGm~av~~td 207 (549)
T PRK12488 135 VVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGI------S-YLYAVVIVGALMVLYVTFGGMLATTWVQ 207 (549)
T ss_pred HHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------C-HHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 9999998 557777777777766666677777777777777542 1 2233345555556667788888887766
Q ss_pred HHHHHHHHH
Q 043105 191 IFADVVDLA 199 (426)
Q Consensus 191 ~~~~~~~~~ 199 (426)
.+=.+.++.
T Consensus 208 ~iQ~~im~~ 216 (549)
T PRK12488 208 IIKAVLLLS 216 (549)
T ss_pred HHHHHHHHH
Confidence 655444433
No 62
>PRK11017 codB cytosine permease; Provisional
Probab=98.50 E-value=0.00034 Score=68.22 Aligned_cols=284 Identities=14% Similarity=-0.028 Sum_probs=140.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhHHHHhcccchhHHHHHHHHHhhhhHHHHHHHH
Q 043105 65 RTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGFVVCGSIGRGIVDVLIILSQAGFCISYLMFI 144 (426)
Q Consensus 65 ~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~ 144 (426)
..++..+++..++...+...-..+......+ ...++..++|..||.++..+..+...+...+-........
T Consensus 38 GLs~~~ai~aiilG~~i~~~~~~l~~~~G~k---------~G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~ 108 (404)
T PRK11017 38 GLSFVDFLLAVLIGNLLLGIYTAALGYIGAK---------TGLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMF 108 (404)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------cCcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3555566666666555555444444444444 3448888999999999999998888887777666665666
Q ss_pred HHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhhhhhhhhhhhc--cCCcccccc
Q 043105 145 ANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFADVVDLAATAVVMVDEVVISL--KQMPEVAAF 222 (426)
Q Consensus 145 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~ 222 (426)
++.++..++. ....+ .++..++..+... ...+.+++++..+........+...+....+.. .+..+.+..
T Consensus 109 ~~~l~~~~~~------~~~~~-~~i~~~l~~~~~~-~G~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 180 (404)
T PRK11017 109 AIPVVKATGL------DINLL-IVLSGLLMTVTAY-FGISALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPA 180 (404)
T ss_pred HHHHHHHhCC------CHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCC
Confidence 6666655432 11222 2222333333332 223444444444433333322222221111100 000000011
Q ss_pred CChhhHHHHHHHHHhh-hccceeeccchhhccccccchhhHHHHHHHHHHHHHHHHhHhhhhcCCccccchhcccCCchH
Q 043105 223 GNLSVFFYGIGVAVYA-FEGIGMVLPLEAEMEKKEKFGGILGLSVTFIALMYVGFGVLGYFAFGSETKDIITANLGAGFV 301 (426)
Q Consensus 223 ~~~~~~~~~~~~~~fa-f~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~i~~~~~~~~~ 301 (426)
+...+..++....=. -....+.+...+..|+|++.......+..+...+...+|...-...|+. |+.+.+..+..
T Consensus 181 -~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~~~~~~lg~~i~~~~~~~~G~~~a~~~~~~---d~~~~~~~~~~ 256 (404)
T PRK11017 181 -EPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKIAVLATMVAFFLGNSLMFIFGAAGAAVYGQA---DISDVMIAQGL 256 (404)
T ss_pred -CcccHHHHHHHHHHHHHHhHhcCCChHhhccCccceeehhHHHHHHHHHHHHHHHHHHHHHcCCc---cHHHHHHHhch
Confidence 122444444443333 3456788999999988877666667777777777777777666666653 22222211112
Q ss_pred HHHHHHHHHHHHHhhhccchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHHHhh-cCCccchhhhhchhhh
Q 043105 302 SVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGGEYCLWLRWLLVFLVSLVAMS-VPNFADFLSLVGSSVC 371 (426)
Q Consensus 302 ~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~i~~~~G~~~~ 371 (426)
.....+...+...++-...++...-.+.+..+.+++ ....+...+..+++.. ..++...+++.|....
T Consensus 257 ~~~~l~~~~l~~~t~n~~~~ys~~l~~~~l~~~~~~--~~~ii~~vi~~~i~~~~~~~~~~FL~~lg~~l~ 325 (404)
T PRK11017 257 LIPAIVMLGLNIWTTNDNALYASGLGFCNITRLSSR--TLTVVNGIIGTVLALWLYNNFVGWLTLLGSAIP 325 (404)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222223333444444344444444444555433222 2222333333333332 2455666666654443
No 63
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.50 E-value=0.001 Score=66.37 Aligned_cols=149 Identities=9% Similarity=-0.060 Sum_probs=92.6
Q ss_pred CCCCCChHHHHHHHHHHhhhhh-hchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHH----HHHHHhhccccCCccccc
Q 043105 34 PAPLSSQTKTFANVFIAIVGAG-VLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLV----HTRRKLESSEHGFTKINS 108 (426)
Q Consensus 34 ~~~~~s~~~~~~~l~~s~iG~G-il~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~----~~~~~~~~~~~~~~~~~~ 108 (426)
..|+.+.+.....+..+.+|++ .++.|....+.|+....... ......+.....+. +..++ .+..|
T Consensus 38 agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------~~~~T 108 (471)
T TIGR02119 38 GGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAM-IQVPTGYFVLGVLGKKFAIISRK--------YNAIT 108 (471)
T ss_pred eCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH--------cCCcc
Confidence 3578899999999999999888 55788877777864211111 11111112112222 22233 36679
Q ss_pred hhhhHHHHhcccc-hhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhh
Q 043105 109 FGDLGFVVCGSIG-RGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLA 187 (426)
Q Consensus 109 y~~l~~~~~G~~~-~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 187 (426)
.+|+-++.||++. +.+..+...+..++...+-+...+..++.+++- + ....+++..++........+++...
T Consensus 109 ~~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi------~-~~~~iii~~~iv~iYt~~GG~~av~ 181 (471)
T TIGR02119 109 INDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGL------S-YLTALFIFSSSVLIYTTFGGFRAVA 181 (471)
T ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------C-HHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999999764 667777777777777777777777777777652 1 2223334444455667778888887
Q ss_pred HHHHHHHHHHH
Q 043105 188 PLSIFADVVDL 198 (426)
Q Consensus 188 ~~s~~~~~~~~ 198 (426)
+...+=.+.++
T Consensus 182 ~td~iQ~~v~~ 192 (471)
T TIGR02119 182 LTDAIQGIVMF 192 (471)
T ss_pred HHHHHHHHHHH
Confidence 76655443333
No 64
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.47 E-value=7.8e-05 Score=72.97 Aligned_cols=146 Identities=12% Similarity=-0.000 Sum_probs=85.7
Q ss_pred CCCCChHHHHHHHHHHhhhhh-hchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhH
Q 043105 35 APLSSQTKTFANVFIAIVGAG-VLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLG 113 (426)
Q Consensus 35 ~~~~s~~~~~~~l~~s~iG~G-il~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~ 113 (426)
.|+.+++...+.+..+.+|++ +++.|....+.|+...+ ..+............+.+-.++ .+..|.+|.-
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~~~-~~~~~~~~~~~~~~~~~~~~r~--------~~~~T~~e~~ 75 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISGLW-YAIGYAIGFLLFALFFAPRLRR--------SGAVTIPEYL 75 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGGGH-HHHHHHHHHHHHHHHTHHHHHH--------TT--SHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceee-eccccchhHHHHHHHHHHhhcc--------cchhhhhhhh
Confidence 577889999999999998887 56789888888875432 2233233333333444444443 3667999999
Q ss_pred HHHhcccc--hhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 043105 114 FVVCGSIG--RGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSI 191 (426)
Q Consensus 114 ~~~~G~~~--~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 191 (426)
++.||++. +.+..+...+.........+...+..++.+++- + .....++...+.+......+++...+...
T Consensus 76 ~~Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi------~-~~~~~~i~~~i~~iYt~~GGl~av~~td~ 148 (406)
T PF00474_consen 76 EKRYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGI------P-YNTAILIVGVIVIIYTFFGGLRAVAWTDF 148 (406)
T ss_dssp HHHT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHTTCTT------SHHH
T ss_pred hhhcCCchhhhhhcccccchhhhhhhhccccccccchhhccch------h-hhHHHHHHHHHHHHhhhhhhHhhhhHHHH
Confidence 99999998 666656566666677777778888888877652 2 23344455556666777888888876555
Q ss_pred HHHHH
Q 043105 192 FADVV 196 (426)
Q Consensus 192 ~~~~~ 196 (426)
+=.+.
T Consensus 149 iQ~~i 153 (406)
T PF00474_consen 149 IQGVI 153 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 65
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.41 E-value=0.0023 Score=64.12 Aligned_cols=151 Identities=9% Similarity=-0.084 Sum_probs=87.3
Q ss_pred CCCCCChHHHHHHHHHHhhhhh-hchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhh
Q 043105 34 PAPLSSQTKTFANVFIAIVGAG-VLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDL 112 (426)
Q Consensus 34 ~~~~~s~~~~~~~l~~s~iG~G-il~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l 112 (426)
..|+.+.+.....+..+.+|++ .++.|....+.|+...+.. .............+..-..+..++ .+..|.+|+
T Consensus 39 agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~----~~~~T~~e~ 113 (483)
T PRK09442 39 GNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLA-MIQVPTVWLSLGILGKKFAILARK----YNAVTLNDM 113 (483)
T ss_pred eCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH----cCCccHHHH
Confidence 3577888888888888887775 5678877777776421111 111111111222222211111111 366799999
Q ss_pred HHHHhcccc-hhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 043105 113 GFVVCGSIG-RGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSI 191 (426)
Q Consensus 113 ~~~~~G~~~-~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 191 (426)
.++.||++. +.+..+...+..+......+...+..++.+++- + ..+.+++..++........+++...+...
T Consensus 114 l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~gi------~-~~~~iii~~~iv~iYt~~GGl~av~~TD~ 186 (483)
T PRK09442 114 LRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATGI------S-YETGLLIFGITVALYTAFGGFRAVVLTDA 186 (483)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------C-HHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 999999764 555555555555555666677777777776642 1 23333344445566677888888877555
Q ss_pred HHHHH
Q 043105 192 FADVV 196 (426)
Q Consensus 192 ~~~~~ 196 (426)
+=.+.
T Consensus 187 iQ~~i 191 (483)
T PRK09442 187 LQGIV 191 (483)
T ss_pred HHHHH
Confidence 44333
No 66
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=98.41 E-value=0.00023 Score=68.08 Aligned_cols=315 Identities=14% Similarity=0.137 Sum_probs=151.7
Q ss_pred HHHHHhhhhhhchhhHHHh-ccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhHHHHhcccch
Q 043105 46 NVFIAIVGAGVLGLPYAFK-RTG--WLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGFVVCGSIGR 122 (426)
Q Consensus 46 ~l~~s~iG~Gil~lP~~~~-~~G--~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~ 122 (426)
.+..--+|+|.+-.|-... ++| |..+.+..++.++..-..+.. ..-. ...+|.++.+ .+||+.+
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~----av~~--------~gG~~~~l~~-~~g~~f~ 69 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI----ALAL--------VGGGYDSLSA-RIGKVFG 69 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh----eeee--------cCCCHHHHHH-HhChHHH
Confidence 4556678999999986543 444 555555555555554443333 1111 2237777665 4567666
Q ss_pred hHHHHHHHHHhh-h------hHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 043105 123 GIVDVLIILSQA-G------FCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFADV 195 (426)
Q Consensus 123 ~i~~~~~~~~~~-g------~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 195 (426)
.+..+...+..- + ..++|-.. +.++++... .....+...+.+..+.-+...+.-|-..+++.+.+.
T Consensus 70 ~lf~~~~~l~iGP~~aiPRtaa~s~e~~----i~p~~~~~~---~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP 142 (378)
T TIGR00796 70 ILFTVILYLTIGPLFAIPRTATVSFEMG----IAPLLHSPT---SLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTP 142 (378)
T ss_pred HHHHHHHHHHHHhchhhhHHHHHHHHHH----HHhccCccc---chHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHHH
Confidence 666555543322 2 22233322 444444311 011111111222222222445666667777777777
Q ss_pred HHHHHhhhhhhhhhhhhccCCccc-cccCChhhHHHHHHHHHhhhc-------cceeeccchh-hcccccc-chhhHHHH
Q 043105 196 VDLAATAVVMVDEVVISLKQMPEV-AAFGNLSVFFYGIGVAVYAFE-------GIGMVLPLEA-EMEKKEK-FGGILGLS 265 (426)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~faf~-------~~~~i~~i~~-~m~~p~~-~~~~~~~~ 265 (426)
..+..+..++..++.....+..+. ....+-..+.+++-...+++. +...+-.+.+ |+|||++ .++....+
T Consensus 143 ~lLi~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G 222 (378)
T TIGR00796 143 ALLVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAG 222 (378)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 777766666655554321111111 001000234444444444555 5666666666 8999865 45555555
Q ss_pred H---HHHHHHHHHHHhHhhhhcC---Cc-cccchhcccCC----chHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcC
Q 043105 266 V---TFIALMYVGFGVLGYFAFG---SE-TKDIITANLGA----GFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKG 334 (426)
Q Consensus 266 ~---~~~~~~Y~~~g~~gy~~fg---~~-~~~~i~~~~~~----~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~ 334 (426)
. +....+|.-.+..|...-+ +. ..+.++.+.-+ +.-..+..+...+..+++-........+.+.+...+
T Consensus 223 ~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k 302 (378)
T TIGR00796 223 LIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK 302 (378)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4 3344444444444433321 11 11222222211 111223334444444444444444566666666543
Q ss_pred CcchhHHHHHHHHHHHHHHhhcCCccchhhhhchhhhhhhHhHHHHHHHHHHh
Q 043105 335 GEYCLWLRWLLVFLVSLVAMSVPNFADFLSLVGSSVCCGLGFVLPALFHLLVF 387 (426)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~G~~~~~~~~~ilP~l~~l~~~ 387 (426)
-+.+. .-...++.+++++. -+++.++++ +...+.+++|...-+.+.
T Consensus 303 ~~y~~-~v~~~~l~s~~ia~--~Gl~~Ii~~----~~PvL~~~YP~~i~lill 348 (378)
T TIGR00796 303 LSYKT-WVIVFTLFSFIVAN--LGLTQIISI----SIPVLMIIYPLAIVLILL 348 (378)
T ss_pred CCHHH-HHHHHHHHHHHHHH--hCHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 22222 22233334444443 367888876 556788888887765543
No 67
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.32 E-value=0.0056 Score=62.20 Aligned_cols=147 Identities=10% Similarity=0.012 Sum_probs=88.3
Q ss_pred CCCCCChHHHHHHHHHHhhhhh-hchhhHHHhccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccccCCccccchhh
Q 043105 34 PAPLSSQTKTFANVFIAIVGAG-VLGLPYAFKRTGWLMGSLMIISVSALTF-HCMMLLVHTRRKLESSEHGFTKINSFGD 111 (426)
Q Consensus 34 ~~~~~s~~~~~~~l~~s~iG~G-il~lP~~~~~~G~~~g~i~l~~~~~~~~-~t~~~l~~~~~~~~~~~~~~~~~~~y~~ 111 (426)
..|+.+.+.....+..+.+++. .++.|....+.|+.. ....+ ...+.. ....++.+-.++. +..|.+|
T Consensus 65 aGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~-~~~~~-g~~~~~~i~~~~~a~~lrr~--------g~~T~~d 134 (549)
T TIGR02711 65 AGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDG-LIYSL-GFLVGWPIILFLIAERLRNL--------GRYTFAD 134 (549)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-HHHHH-HHHHHHHHHHHHHHHHHHHc--------CCccHHH
Confidence 4577888887777777776654 678898777777643 22111 111111 1223333333332 5579999
Q ss_pred hHHHHhccc-chhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q 043105 112 LGFVVCGSI-GRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLS 190 (426)
Q Consensus 112 l~~~~~G~~-~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 190 (426)
..++-||.+ .+.+..+...+....-....+...+..++.+++- + ..+.+++..++........+++...+..
T Consensus 135 ~l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi------~-~~~~iii~~~i~~~Yt~~GGm~av~~td 207 (549)
T TIGR02711 135 VASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGL------N-YHVAVVLVGILMVMYVLFGGMLATTWVQ 207 (549)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------C-HHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 999999754 6666666666655555556666777777776542 1 2333445555566667778888877766
Q ss_pred HHHHHHH
Q 043105 191 IFADVVD 197 (426)
Q Consensus 191 ~~~~~~~ 197 (426)
.+=.+.+
T Consensus 208 ~iQ~~im 214 (549)
T TIGR02711 208 IIKAVLL 214 (549)
T ss_pred HHHHHHH
Confidence 5544333
No 68
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=98.31 E-value=3e-05 Score=76.77 Aligned_cols=241 Identities=12% Similarity=-0.027 Sum_probs=124.3
Q ss_pred CCCCCChHHHHHHHHHHhhhhhhchhhHHHh--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhh
Q 043105 34 PAPLSSQTKTFANVFIAIVGAGVLGLPYAFK--RTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGD 111 (426)
Q Consensus 34 ~~~~~s~~~~~~~l~~s~iG~Gil~lP~~~~--~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~ 111 (426)
++|+.+.++-+..-.+..+....+.+-.... ..++..+++..++..++...-..+......| ...+...
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r---------~Gl~~~v 75 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPR---------TGLPTMV 75 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHC---------C---HHH
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccc---------cCCCchh
Confidence 3566677777777666666666555444332 3455666666666666655555555444444 3347778
Q ss_pred hHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccC-C--------CchhHHHHHHHHHHHHHhhhhhh
Q 043105 112 LGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTIL-G--------MSAKGFYIWSCLPFQLGLNSIAT 182 (426)
Q Consensus 112 l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~-~--------~~~~~~~~~i~~~~~~pl~~~~~ 182 (426)
++|..||+++..+..+...+...|-........++.+..+++...+. . .....+...+...++.-......
T Consensus 76 ~sR~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g 155 (440)
T PF02133_consen 76 LSRASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFAIYG 155 (440)
T ss_dssp HTTTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHHHCTH
T ss_pred cchhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHHhcC
Confidence 89999999999999999999999999989999999999887754210 0 01111111111111111123345
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhhhhhhhhcc--CCccccccCChhhHHHHHHHHHhhh-ccceeeccchhhccccccch
Q 043105 183 LTHLAPLSIFADVVDLAATAVVMVDEVVISLK--QMPEVAAFGNLSVFFYGIGVAVYAF-EGIGMVLPLEAEMEKKEKFG 259 (426)
Q Consensus 183 l~~l~~~s~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~i~~i~~~m~~p~~~~ 259 (426)
.+.++++.......................+. .............+..++....-.+ ....+.+...+.+|++++-.
T Consensus 156 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~~~~~~~~ 235 (440)
T PF02133_consen 156 MKALRRLAVIAAPILLVVFIGMLIWALSKAGGGPLLSAPASPSPSGSFLAAIALVIGSWISWAPNASDYSRYAKSDTSAW 235 (440)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCT-HHHCCS--S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC--HHHHH
T ss_pred HHHHHhHHhhhhHHHHhhhhheeEEEeecCCcchhhhCcccchhHHHHHHHHHHHHhhhhhhhhccccHHhhCCCCCCcE
Confidence 56666655555444333322222222111111 0000001110112334433333222 23455668888899887777
Q ss_pred hhHHHHHHHHHHHHHHHHhHhhhh
Q 043105 260 GILGLSVTFIALMYVGFGVLGYFA 283 (426)
Q Consensus 260 ~~~~~~~~~~~~~Y~~~g~~gy~~ 283 (426)
+....+..........++..+...
T Consensus 236 ~~~~~~~~~~~~~~~~~g~lg~~~ 259 (440)
T PF02133_consen 236 WGFWLGFPGGFIPFVLVGILGAAA 259 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeehhhhHHHHHHHHHHHHHHH
Confidence 777777777777777766665543
No 69
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=98.23 E-value=0.0023 Score=61.91 Aligned_cols=151 Identities=14% Similarity=0.045 Sum_probs=95.1
Q ss_pred CCCChHHHHHHHHHHhhhhh-hchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccch-----
Q 043105 36 PLSSQTKTFANVFIAIVGAG-VLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSF----- 109 (426)
Q Consensus 36 ~~~s~~~~~~~l~~s~iG~G-il~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y----- 109 (426)
++.|.+|+++....+.+|.| ++++|.+.+..| ..++..+-+.+++..-+.+.......++.++ +++.+|
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~----~~~g~~~GGP~ 119 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRER----DADGVFRGGPM 119 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeee----CCCCCEecChH
Confidence 56999999999999999998 999999965554 5665555555555555555555555555332 233335
Q ss_pred hhhHHHHhcccchhHHHHHHHHHhhh-hHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhH
Q 043105 110 GDLGFVVCGSIGRGIVDVLIILSQAG-FCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAP 188 (426)
Q Consensus 110 ~~l~~~~~G~~~~~i~~~~~~~~~~g-~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 188 (426)
.++-+...|||.+.+..++ .+..++ .+........+.++..+ ....|...+...++..+....++|.+..
T Consensus 120 yyi~~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~--------~~~~~v~~i~l~~l~~~vi~GGik~Ia~ 190 (425)
T TIGR00835 120 YYIKKGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAF--------NVPKLVTGIVLTVLTALIIFGGLKRIAK 190 (425)
T ss_pred HHHHHHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHc--------CCcHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 7777788888877776666 333322 23334444444444322 1134555555555555667788999988
Q ss_pred HHHHHHHHHHHH
Q 043105 189 LSIFADVVDLAA 200 (426)
Q Consensus 189 ~s~~~~~~~~~~ 200 (426)
++......+...
T Consensus 191 v~~~lvP~m~~~ 202 (425)
T TIGR00835 191 ISSVVVPFMALL 202 (425)
T ss_pred HHHHHHHHHHHH
Confidence 887776665544
No 70
>PRK09395 actP acetate permease; Provisional
Probab=98.18 E-value=0.011 Score=60.14 Aligned_cols=146 Identities=10% Similarity=-0.028 Sum_probs=88.3
Q ss_pred CCCCCChHHHHHHHHHHhhhhh-hchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhh
Q 043105 34 PAPLSSQTKTFANVFIAIVGAG-VLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDL 112 (426)
Q Consensus 34 ~~~~~s~~~~~~~l~~s~iG~G-il~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l 112 (426)
..|+.+++...+.+..+.+|++ .++.|....+.|+...+ ..+...+-......++.+-.++ .+..|++|+
T Consensus 67 agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~~-~~~~~~~g~~~~~~~~~~~~r~--------~g~~T~~d~ 137 (551)
T PRK09395 67 AGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLI-YSIGFLVGWPIILFLIAERLRN--------LGKYTFADV 137 (551)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHHH-HHHHHHHHHHHHHHHHHHHHhh--------CCCccHHHH
Confidence 4577888888888888888876 56889877777864321 1111111111112222222222 356799999
Q ss_pred HHHHhccc-chhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 043105 113 GFVVCGSI-GRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSI 191 (426)
Q Consensus 113 ~~~~~G~~-~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 191 (426)
.++.||++ .+.+..+...+........-+...+..++.+++- + ....+++..++........+++...+...
T Consensus 138 l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~gi------~-~~~~ili~~~i~~iYt~~GGm~av~~TD~ 210 (551)
T PRK09395 138 ASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFGL------N-YHVAVVLVGVLMMVYVLFGGMLATTWVQI 210 (551)
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------C-HHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 99999954 7777776666655555555566666667666542 2 23333455555566677788888777665
Q ss_pred HHHH
Q 043105 192 FADV 195 (426)
Q Consensus 192 ~~~~ 195 (426)
+=.+
T Consensus 211 iQ~i 214 (551)
T PRK09395 211 IKAV 214 (551)
T ss_pred HHHH
Confidence 4433
No 71
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.13 E-value=0.013 Score=58.83 Aligned_cols=153 Identities=10% Similarity=-0.047 Sum_probs=85.3
Q ss_pred CCCCCChHHHHHHHHHHhhhhh-hchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhh
Q 043105 34 PAPLSSQTKTFANVFIAIVGAG-VLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDL 112 (426)
Q Consensus 34 ~~~~~s~~~~~~~l~~s~iG~G-il~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l 112 (426)
..|+.+++...+.+..+.+++. .++.|....+.|+...+.. .............+.+-.++..+ ++.+..|.+|+
T Consensus 34 agr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~~~-~g~~~~~~~~~~~~~~~~r~~~~---~~~~~~T~~e~ 109 (487)
T TIGR02121 34 GGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELWIA-IGLTIGAYINWKFVAPRLRVYTE---AAHNSITLPDF 109 (487)
T ss_pred eCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH---hhcCCccHHHH
Confidence 3577888888888888877766 5578877777787532221 11111122223333332222211 01467799999
Q ss_pred HHHHhcccchh---HHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 043105 113 GFVVCGSIGRG---IVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPL 189 (426)
Q Consensus 113 ~~~~~G~~~~~---i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~ 189 (426)
.++.||++.+. +..+...+........-+...+..++.+++- + ....+++..++........+++...+.
T Consensus 110 l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~gi------~-~~~~iii~~~i~~~Yt~~GGl~av~~T 182 (487)
T TIGR02121 110 FENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFGL------D-YKTGLLIGALIIVIYTFFGGFLAVSWT 182 (487)
T ss_pred HHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------c-HHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99999975433 3333343333333444455566666666542 1 223333455555666777888888776
Q ss_pred HHHHHHHH
Q 043105 190 SIFADVVD 197 (426)
Q Consensus 190 s~~~~~~~ 197 (426)
..+=.+.+
T Consensus 183 D~iQ~~i~ 190 (487)
T TIGR02121 183 DFVQGLLM 190 (487)
T ss_pred HHHHHHHH
Confidence 55444333
No 72
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=98.09 E-value=0.0093 Score=57.63 Aligned_cols=366 Identities=10% Similarity=-0.075 Sum_probs=174.2
Q ss_pred CCCChHHHHHHHHHHhhhhhhchhhHHH-hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhHH
Q 043105 36 PLSSQTKTFANVFIAIVGAGVLGLPYAF-KRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGF 114 (426)
Q Consensus 36 ~~~s~~~~~~~l~~s~iG~Gil~lP~~~-~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~~ 114 (426)
+.....+..+.+..+-+|.|-.+--... ++.|+-..+++++. -...+.-..+-+|.... ...+..|..+
T Consensus 15 ~~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vills-~l~~~~~Q~~~arLgiv---------TG~~laq~ir 84 (416)
T COG1914 15 KLLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVILLS-NLMAYILQELSARLGIV---------TGKGLAEAIR 84 (416)
T ss_pred HHHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---------hCCcHHHHHH
Confidence 3355555566666677777755443332 35565553333221 22222222222233332 2337888889
Q ss_pred HHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 043105 115 VVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFAD 194 (426)
Q Consensus 115 ~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 194 (426)
+.|+|+..++..+...+....++++.....+-.++.++.-+ ..+..++..+..+.....++.+.+..+...-.
T Consensus 85 ~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~ip-------~~~g~iItav~~~iil~~~~~r~~E~~v~~l~ 157 (416)
T COG1914 85 ERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFGIP-------LIIGAVITAVDVLIILLLKGYRLLERVVLILG 157 (416)
T ss_pred HHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 99999999999999999999999999998888888876532 34443343333333333445666665555444
Q ss_pred HHHHHHhhhhhhhhhhhhccCCcc--ccccCChhhHHHHHHHHH------hhhccceeecc-chhhccccccchhh---H
Q 043105 195 VVDLAATAVVMVDEVVISLKQMPE--VAAFGNLSVFFYGIGVAV------YAFEGIGMVLP-LEAEMEKKEKFGGI---L 262 (426)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------faf~~~~~i~~-i~~~m~~p~~~~~~---~ 262 (426)
..+...+........+....-... .+..++.......++++- -.|.+...+-+ ...+-+++++.++. .
T Consensus 158 ~~~~i~~~~~~~~~~p~~~~~~~~~f~P~~~~~~~l~~ii~ilGaTVmP~i~y~~s~~v~~~~~~~~~~~~~~~~~~~d~ 237 (416)
T COG1914 158 LVLVILFVYVAFVAPPPWGEVAKGDFLPSSPWTEALLLIIAILGATVMPHILYLHSSLVQDAGIKGEENLRALRYSRIDT 237 (416)
T ss_pred HHHHHHHHHHHhhcCCCHHHHhccCCCCCCcchhHHHHHHHHhccchhHHHHHhhcceeccccccchhHHHHHHHHHHHH
Confidence 444444444433332211100111 111111111222222211 11111111111 00011112223332 3
Q ss_pred HHHHHHHHHHHHHHHhHhhhhcCCccc-c---chhccc--CCchHHHHHHHHH----HHHHHhhhccchhhHHHHHHHhh
Q 043105 263 GLSVTFIALMYVGFGVLGYFAFGSETK-D---IITANL--GAGFVSVLVQLGL----CINLFFTFPLMMHPVYEIVERRF 332 (426)
Q Consensus 263 ~~~~~~~~~~Y~~~g~~gy~~fg~~~~-~---~i~~~~--~~~~~~~~~~~~~----~~~~~~s~pl~~~~~~~~~~~~~ 332 (426)
.++.....++...+-......|....+ . +...-+ -.+.........+ +.+-..+....-+.....++...
T Consensus 238 ~i~~~~a~lv~~ail~~aa~~~~~~~~~~~~~~~~~a~~~l~~~~G~~~~~lF~v~llasg~~s~~~~~~a~~~~~~g~~ 317 (416)
T COG1914 238 IIGMIIALLVNLAILIVAAAGFHNSGPNQDVADAYDAYLLLAPLLGSAAFVLFGVALLAAGLSSTVVATYAGQIVMEGFL 317 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccccccchHHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHhhh
Confidence 445555555555554444444433222 1 111111 0111111111111 11112222222222222233333
Q ss_pred cCC--cc-hh-HHHHHHHHHHHHHHhhcCCccchhhhhchhhhhhhHhHHHHHHHHHHhcc-----ccchHHHHHHHHHH
Q 043105 333 KGG--EY-CL-WLRWLLVFLVSLVAMSVPNFADFLSLVGSSVCCGLGFVLPALFHLLVFKE-----EMGWKGWFLDVGIV 403 (426)
Q Consensus 333 ~~~--~~-~~-~~~~~~~~~~~~~a~~~~~~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~~-----~~~~~~~~~~~~~~ 403 (426)
+.+ .+ ++ ..|......+.++.+...+...++.+.+...+..+-+..++++++..+|+ +.++|.++..|.+.
T Consensus 318 ~~~~~~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~~~~~~~~~~~~v~ 397 (416)
T COG1914 318 NWRIPLWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKNPRWLTVLGWIVV 397 (416)
T ss_pred cccCchHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcccchHHHHHHHHHHH
Confidence 311 11 11 13333344444444444488999999888888777777777777777664 23566677888887
Q ss_pred HHHHHHHHHhHHHHH
Q 043105 404 VVGVVFGVSGTWYAL 418 (426)
Q Consensus 404 ~~g~~~~v~~~~~~i 418 (426)
++-....+.-.+...
T Consensus 398 ~~i~~L~i~li~~~~ 412 (416)
T COG1914 398 ILIVALNIILLVGTL 412 (416)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777766666544
No 73
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.04 E-value=0.019 Score=57.56 Aligned_cols=146 Identities=14% Similarity=-0.023 Sum_probs=95.3
Q ss_pred CCCCCChHHHHHHHHHHhhh-hhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhh
Q 043105 34 PAPLSSQTKTFANVFIAIVG-AGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDL 112 (426)
Q Consensus 34 ~~~~~s~~~~~~~l~~s~iG-~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l 112 (426)
.+|+.+.+-.......+.++ .-.+++|....+.|+...++..... .........+.+-..+..+ +++..|.+|+
T Consensus 36 ~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~-~~~~~~~~~~~~rl~~~~~----~~~~~T~~d~ 110 (493)
T COG0591 36 GGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLL-IGAFLLWLLFAPRLRRLAK----ARGATTIPDF 110 (493)
T ss_pred cCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc----ccCCccHHHH
Confidence 35666676666677777777 6688999998888876655444421 2222222223222222222 2678899999
Q ss_pred HHHHhc-ccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 043105 113 GFVVCG-SIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSI 191 (426)
Q Consensus 113 ~~~~~G-~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 191 (426)
.++.|| |+.+.+..+...+....-+..-+...++.++..++ .+ .....++...++.......+++...+...
T Consensus 111 l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i~------~~~~~~~~~~~v~~Yt~~gG~~av~~Td~ 183 (493)
T COG0591 111 LEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-IS------YVTGILIGALIVALYTFLGGLRAVVWTDF 183 (493)
T ss_pred HHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CC------HHHHHHHHHHHHHHHHHHcChhHHHHHHH
Confidence 999999 78899999999999999999999999998877666 32 22222233444445556666666665443
No 74
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.99 E-value=0.019 Score=55.91 Aligned_cols=275 Identities=14% Similarity=0.027 Sum_probs=135.6
Q ss_pred CCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhhhhhhchhhHHHhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043105 20 QQPLPREDTPLIGKPAPLSSQTKTFANVFIAIVGAGVLGLPYAFKRTG--WLMGSLMIISVSALTFHCMMLLVHTRRKLE 97 (426)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G--~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~ 97 (426)
++.+.+++-.+.++++|+=++++-+..-.+...-.+.-.+-...-+.| +...++...+.-++....+.+-.+...
T Consensus 23 ~~~lyN~DL~P~~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~--- 99 (497)
T COG1953 23 SSFLYNEDLAPTPAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGS--- 99 (497)
T ss_pred CccccCCCCCCCccccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCccc---
Confidence 333444444444456777777666544443333222222211211222 333444444444444444333333333
Q ss_pred ccccCCccccchhhhHHHHhcccchh---HHHHHHHHHhhhhHHHHHH-HHHHhHHHHhhcccc-------CCCchhHHH
Q 043105 98 SSEHGFTKINSFGDLGFVVCGSIGRG---IVDVLIILSQAGFCISYLM-FIANTLVYFFRTSTI-------LGMSAKGFY 166 (426)
Q Consensus 98 ~~~~~~~~~~~y~~l~~~~~G~~~~~---i~~~~~~~~~~g~~~~y~i-~~~~~l~~~~~~~~~-------~~~~~~~~~ 166 (426)
+..-.|+.++|..||-++.. +......+.-+|..+---- .+.-.+..+++.... .+.....++
T Consensus 100 ------~~gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i 173 (497)
T COG1953 100 ------KYGIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELI 173 (497)
T ss_pred ------ccCCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCccccccCCcHHHHH
Confidence 24559999999999988655 4444555555665542111 111223333333211 111222222
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhhhhhhhhhhhc------cCCccccc-cCChhhHHHHHHHHHhhh
Q 043105 167 IWSCLPFQLGLNSIATLTHLAPLSIFADVVDLAATAVVMVDEVVISL------KQMPEVAA-FGNLSVFFYGIGVAVYAF 239 (426)
Q Consensus 167 ~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~~~faf 239 (426)
-.+++=++-.++..+..+.++++..++...+.+.+....++...+.. +.+..... ......+..++...+-.|
T Consensus 174 ~F~ifW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~ 253 (497)
T COG1953 174 CFFIFWVLQLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFW 253 (497)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHH
Confidence 22222222234456778888887777766666655544443332211 11111111 112223333332222222
Q ss_pred -ccceeeccchhhccccccchhhHHHHHHHHHHHHHHHHh----HhhhhcCCcc--ccchhcccCCchHHH
Q 043105 240 -EGIGMVLPLEAEMEKKEKFGGILGLSVTFIALMYVGFGV----LGYFAFGSET--KDIITANLGAGFVSV 303 (426)
Q Consensus 240 -~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~~~Y~~~g~----~gy~~fg~~~--~~~i~~~~~~~~~~~ 303 (426)
....|+|...+.-|+|+...+.-.++..+.+.+..++|+ .++..||+.. +.++..++++.....
T Consensus 254 Atl~lN~~DFsRfa~s~~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~ 324 (497)
T COG1953 254 ATLALNIPDFTRFAKSQKAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAA 324 (497)
T ss_pred HHHhcCCchhhcccCChhhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHH
Confidence 346788999999999876555555666666666655554 4566799884 457778887654443
No 75
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.99 E-value=0.0014 Score=65.19 Aligned_cols=217 Identities=14% Similarity=0.077 Sum_probs=112.3
Q ss_pred hhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhHHHHhcccchhHHHHHHHHHhhhhH
Q 043105 58 GLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGFVVCGSIGRGIVDVLIILSQAGFC 137 (426)
Q Consensus 58 ~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~ 137 (426)
=.++.+.++|....+..++++-.+..+|..-+.. -.+++ .-++..-|..+.+. .|+-.+--+..++.+.+...|
T Consensus 89 R~gfIvG~aGll~Tll~lliaY~I~llTvlSicA--IsTNG---aV~GGGaYymISRs-LGpEfGGSIGllFf~anV~~~ 162 (945)
T KOG1288|consen 89 RFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICA--ISTNG---AVRGGGAYYMISRS-LGPEFGGSIGLLFFVANVFNC 162 (945)
T ss_pred HHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhh--hccCC---ceecCceEEEEEcc-cCcccCCeeeehhhHHHHhcc
Confidence 4588888999998888888877777777655433 22221 11355667776654 444433334455555556666
Q ss_pred HHHHHHHHHhHHHHhhccc---------cCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhhhhhhh
Q 043105 138 ISYLMFIANTLVYFFRTST---------ILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFADVVDLAATAVVMVDE 208 (426)
Q Consensus 138 ~~y~i~~~~~l~~~~~~~~---------~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~i~~~ 208 (426)
..++..+.+-+-..++... +-+...+..+..++..+++.+|+.. -..+++.+.+..+.+......+.+..
T Consensus 163 am~isG~vE~il~nfG~~a~g~sg~~~lP~g~ww~fly~t~vl~l~~~vc~lG-salfAkas~i~f~~is~s~~si~iS~ 241 (945)
T KOG1288|consen 163 AMNISGFVEPILDNFGKEAQGASGSQFLPDGYWWRFLYTTLVLALCLIVCLLG-SALFAKASNILFVVISVSLFSIPISF 241 (945)
T ss_pred hhhhhhhhHHHHHhcCccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHhh-HHHHHhhhhhhhhHHHHHHhhhhhee
Confidence 6777777776665554221 0000111111112222333333332 23334444433333322222221111
Q ss_pred -----hhhhc--cCCcc---------cccc-------------------CChhhHHHHHHHHHhhhccceeeccchhhcc
Q 043105 209 -----VVISL--KQMPE---------VAAF-------------------GNLSVFFYGIGVAVYAFEGIGMVLPLEAEME 253 (426)
Q Consensus 209 -----~~~~~--~~~~~---------~~~~-------------------~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~ 253 (426)
..... ++.+. ...+ ....++...++++.-+-.|...=.....|+|
T Consensus 242 ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~F~g~tGimAGAnMSgELk 321 (945)
T KOG1288|consen 242 IFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGVFFPGTTGIMAGANMSGELK 321 (945)
T ss_pred EEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhheeeeccchhhhcCCCcCcccc
Confidence 11100 00000 0000 1122444455555555555555567788999
Q ss_pred ccc-cchhhHHHHHHHHHHHHHHHHhHhh
Q 043105 254 KKE-KFGGILGLSVTFIALMYVGFGVLGY 281 (426)
Q Consensus 254 ~p~-~~~~~~~~~~~~~~~~Y~~~g~~gy 281 (426)
+|+ ..+|-...++..++++|.++.+.--
T Consensus 322 ~PSkSIP~GTl~ava~Tf~~Yvl~~flm~ 350 (945)
T KOG1288|consen 322 APSKSIPKGTLSAVAFTFFVYVLVIFLMG 350 (945)
T ss_pred CccccCCccchHHHHHHHHHHHHHHHHhc
Confidence 994 5999999999999999998765543
No 76
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.97 E-value=0.026 Score=56.84 Aligned_cols=152 Identities=14% Similarity=-0.004 Sum_probs=85.8
Q ss_pred CCCCCChHHHHHHHHHHhhhhhh-chhhHHHhccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccccCCccccchhh
Q 043105 34 PAPLSSQTKTFANVFIAIVGAGV-LGLPYAFKRTGWLMGSLMIISVSALTF-HCMMLLVHTRRKLESSEHGFTKINSFGD 111 (426)
Q Consensus 34 ~~~~~s~~~~~~~l~~s~iG~Gi-l~lP~~~~~~G~~~g~i~l~~~~~~~~-~t~~~l~~~~~~~~~~~~~~~~~~~y~~ 111 (426)
..|+.+++...+.+..+.+++.. ++.|....+.|+...+.. +...+.. .....+..-..+ +. +++.+..|.+|
T Consensus 38 agr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~~~~--~~~~~~~~l~~~~~~~~l~~-~~--~~~~~~~T~~e 112 (502)
T PRK15419 38 GGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWIA--IGLTLGAWINWKLVAGRLRV-HT--EYNNNALTLPD 112 (502)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHHHHH--HHHHHHHHHHHHHHHHHHHH-HH--HHhcCceeHHH
Confidence 46888999999988888888874 578988778886532211 1111111 111111111111 00 01246679999
Q ss_pred hHHHHhcccchh---HHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhH
Q 043105 112 LGFVVCGSIGRG---IVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAP 188 (426)
Q Consensus 112 l~~~~~G~~~~~---i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 188 (426)
.-++-||++.+. +..+...+....-+..-+...+..++.+++- + ..+.+++...+........+++...+
T Consensus 113 ~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~gi------~-~~~~iii~~~iv~iYt~~GGl~aV~~ 185 (502)
T PRK15419 113 YFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGM------S-YETALWAGAAATILYTFIGGFLAVSW 185 (502)
T ss_pred HHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------C-HHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 999999975433 3444444444443444445556666665542 1 23334455566667778888888887
Q ss_pred HHHHHHHHH
Q 043105 189 LSIFADVVD 197 (426)
Q Consensus 189 ~s~~~~~~~ 197 (426)
...+=.+.+
T Consensus 186 TD~iQ~~im 194 (502)
T PRK15419 186 TDTVQASLM 194 (502)
T ss_pred HHHHHHHHH
Confidence 665544333
No 77
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.95 E-value=0.024 Score=55.77 Aligned_cols=48 Identities=8% Similarity=-0.154 Sum_probs=36.8
Q ss_pred ccchhhhHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhh
Q 043105 106 INSFGDLGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFR 153 (426)
Q Consensus 106 ~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 153 (426)
..+..|..++.+||+..++..+...+...+...+.....+..++.+++
T Consensus 93 G~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~g 140 (439)
T PRK00701 93 GRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFG 140 (439)
T ss_pred CCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 348999999999999888887777777777777777777666665543
No 78
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=97.94 E-value=0.012 Score=56.73 Aligned_cols=157 Identities=13% Similarity=0.027 Sum_probs=87.4
Q ss_pred CCCCCCChHHHHHHHHHHhhhhh-hchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhh
Q 043105 33 KPAPLSSQTKTFANVFIAIVGAG-VLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGD 111 (426)
Q Consensus 33 ~~~~~~s~~~~~~~l~~s~iG~G-il~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~ 111 (426)
+++++.|.+|+++..+.+.+|.| +.+...|+.-.| ..++..+-+.+++..-+-+.-.....+++.+.++.+-...-..
T Consensus 14 ~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GG-PGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~y 92 (416)
T PF01235_consen 14 EEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGG-PGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMY 92 (416)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHH
Confidence 34578999999999999999999 557788886444 4556666666666665555555555555433111111122233
Q ss_pred hHHHHhcccc-hhHHHHHHHHHhhhh--HHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhH
Q 043105 112 LGFVVCGSIG-RGIVDVLIILSQAGF--CISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAP 188 (426)
Q Consensus 112 l~~~~~G~~~-~~i~~~~~~~~~~g~--~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 188 (426)
..++.+|+|+ +.+..++ .+..++. ...-.-.+.+.++.-+ ....|...+...++..+....++|++..
T Consensus 93 yi~~gl~~k~la~~fai~-~~~~~~~~~~~~Q~nsi~~~~~~~f--------~i~~~~~gi~l~~l~~~vi~GGikrI~~ 163 (416)
T PF01235_consen 93 YIEKGLGSKWLAILFAIF-LIIAFGIGFNMVQANSIADALSSAF--------GIPPWITGIILAILVALVIFGGIKRIAK 163 (416)
T ss_pred HHHHHhccchHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhhc--------cccHHHHHHHHHHHHHHHHHcchhHHHH
Confidence 4567777664 3233333 2222222 1222222222222221 1234555555555566677888998888
Q ss_pred HHHHHHHHHHH
Q 043105 189 LSIFADVVDLA 199 (426)
Q Consensus 189 ~s~~~~~~~~~ 199 (426)
++..-...+..
T Consensus 164 v~~~lVP~Ma~ 174 (416)
T PF01235_consen 164 VSEKLVPFMAI 174 (416)
T ss_pred HHHHHHHHHHH
Confidence 77655544433
No 79
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.86 E-value=0.045 Score=55.82 Aligned_cols=148 Identities=8% Similarity=-0.034 Sum_probs=91.6
Q ss_pred CCCCCCChHHHHHHHHHHhhhhh-hchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhh
Q 043105 33 KPAPLSSQTKTFANVFIAIVGAG-VLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGD 111 (426)
Q Consensus 33 ~~~~~~s~~~~~~~l~~s~iG~G-il~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~ 111 (426)
...|+.+++...+.+..+.++++ .++.|....+.|+..-... +...........++.+-.++. +..|.+|
T Consensus 29 laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~-~g~~~~~~~~~~~~~p~~rr~--------~~~T~~e 99 (552)
T TIGR03648 29 VAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYL-MGWTGGYVLLALLLAPYLRKF--------GKYTVPD 99 (552)
T ss_pred eeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHH-HHHHHHHHHHHHHHHHHHHHC--------CCccHHH
Confidence 34688999999999998888776 6678877767776331121 111111112234444444443 5669999
Q ss_pred hHHHHhccc-chhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q 043105 112 LGFVVCGSI-GRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLS 190 (426)
Q Consensus 112 l~~~~~G~~-~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 190 (426)
.-++.||++ .+.+..+...+.........+...+..++.+++- + ..+.+++..++........+++...+..
T Consensus 100 ~l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi------~-~~~~iii~~~i~~iYt~~GG~~aV~~TD 172 (552)
T TIGR03648 100 FIGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEV------D-FETGVFIGMAIVFFYAVLGGMKGVTWTQ 172 (552)
T ss_pred HHHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------C-HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999999866 5666666666666666666666667777776542 1 2333344455556667778888887765
Q ss_pred HHHHHH
Q 043105 191 IFADVV 196 (426)
Q Consensus 191 ~~~~~~ 196 (426)
.+=.+.
T Consensus 173 ~iQ~ii 178 (552)
T TIGR03648 173 VAQYIV 178 (552)
T ss_pred HHHHHH
Confidence 544333
No 80
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=97.82 E-value=0.035 Score=53.40 Aligned_cols=231 Identities=13% Similarity=0.103 Sum_probs=117.8
Q ss_pred CCCChHHHHHHHHHHhhhhh-hchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhHH
Q 043105 36 PLSSQTKTFANVFIAIVGAG-VLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGF 114 (426)
Q Consensus 36 ~~~s~~~~~~~l~~s~iG~G-il~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~~ 114 (426)
.-.|...-+...+++.+|-| +--.||...+.|...-++..++.-+.......+.=-..-|.. +.+....|..+..
T Consensus 7 ~w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPlli~Ef~iGr~~----~~~~~~a~~~l~~ 82 (439)
T COG0733 7 QWSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFAIGRRG----RKNAVGAFRKLAP 82 (439)
T ss_pred chhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHHHHHHHHhhhhc----CCChhHHHHHhcc
Confidence 45677788889999999999 557899999888665444444444444443333211222211 1234445544443
Q ss_pred HHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccc---------------cCCCchhHHHHH-HHHHHHHHhh
Q 043105 115 VVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTST---------------ILGMSAKGFYIW-SCLPFQLGLN 178 (426)
Q Consensus 115 ~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~---------------~~~~~~~~~~~~-i~~~~~~pl~ 178 (426)
++....+.+......+..+.-|.++.|=.+..+..... ....+....... ....++.-+.
T Consensus 83 ----~~~~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~i 158 (439)
T COG0733 83 ----KKKWEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALI 158 (439)
T ss_pred ----CccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 33333444444555555555566665544433321110 000001111111 1222222333
Q ss_pred hhhhhhh-hhHHHHHHHHHHHHHhhhhhhhhhhhhc--cC-----CccccccCChhhHHHHHHHHHhhhc-cceeeccch
Q 043105 179 SIATLTH-LAPLSIFADVVDLAATAVVMVDEVVISL--KQ-----MPEVAAFGNLSVFFYGIGVAVYAFE-GIGMVLPLE 249 (426)
Q Consensus 179 ~~~~l~~-l~~~s~~~~~~~~~~~~~~i~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~faf~-~~~~i~~i~ 249 (426)
..+++++ +.+.+.+.+...++..+...++....+. +. .+|.....+.+-...+++...|+.+ |...+.+..
T Consensus 159 v~~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYs 238 (439)
T COG0733 159 VSRGVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYS 238 (439)
T ss_pred HHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554 6666766666666655555555433210 00 1222223345677888999888884 455556666
Q ss_pred hhccccccchhhHHHHHHHHHHHHH
Q 043105 250 AEMEKKEKFGGILGLSVTFIALMYV 274 (426)
Q Consensus 250 ~~m~~p~~~~~~~~~~~~~~~~~Y~ 274 (426)
+.+++++++.+........-+..=+
T Consensus 239 SYL~k~~~l~~sa~~v~~~n~~~s~ 263 (439)
T COG0733 239 SYLSKKSDLVSSALSIVLLNTLISL 263 (439)
T ss_pred hhcCcccchhhhHHHHHHHHHHHHH
Confidence 6777778877655444333333333
No 81
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=97.45 E-value=0.0014 Score=64.33 Aligned_cols=228 Identities=17% Similarity=0.123 Sum_probs=135.9
Q ss_pred CCCCChHHHH-----HHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccch
Q 043105 35 APLSSQTKTF-----ANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSF 109 (426)
Q Consensus 35 ~~~~s~~~~~-----~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y 109 (426)
+-+-++++.+ .|+.+-|+ .|=+++...++|...+++++.....++..|..--.-...+-. -+....|
T Consensus 27 ~v~fg~~~gv~~~cmlni~gv~l---flrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~-----vk~Gg~y 98 (643)
T KOG2083|consen 27 PVLFGWWDGVFVRCMLNIFGVIL---FLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQ-----VKSGGVY 98 (643)
T ss_pred ceEEeeeehhhhhhhHHHHHHHH---hhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecce-----eccCcEE
Confidence 3344555544 34444443 445799999999999999988888777776654333222211 1244455
Q ss_pred hhhHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 043105 110 GDLGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPL 189 (426)
Q Consensus 110 ~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~ 189 (426)
.-++ +..|+..+--+.+++.+.+...+..|.+.++|.+..++...+.+-... +..+.++++.-...-+.+.-++.
T Consensus 99 flis-~slg~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~~~i~g----i~~vt~~ill~i~~ag~~w~~k~ 173 (643)
T KOG2083|consen 99 FLIS-RSLGPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETESKEMIDG----IGSVTVLILLAINVAGVEWEAKL 173 (643)
T ss_pred EEEE-ecccccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccHHHhcc----hhHHHHHHHHHhhhccchhHHHH
Confidence 5444 556666666677888888888999999999999999988765221111 11111111212233455555556
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhc-----------cCCccccccCCh---hhHHHHHHHHHhhhccceeeccchhhcccc
Q 043105 190 SIFADVVDLAATAVVMVDEVVISL-----------KQMPEVAAFGNL---SVFFYGIGVAVYAFEGIGMVLPLEAEMEKK 255 (426)
Q Consensus 190 s~~~~~~~~~~~~~~i~~~~~~~~-----------~~~~~~~~~~~~---~~~~~~~~~~~faf~~~~~i~~i~~~m~~p 255 (426)
+.+-.+...+.+.-.++..+.... ....+ +...++ ..++..++++.=+..|...=.++..++|+|
T Consensus 174 q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~-n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~P 252 (643)
T KOG2083|consen 174 QIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVE-NLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDP 252 (643)
T ss_pred HHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhccc-CCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCc
Confidence 655443333333322222111100 00111 111122 256666777777777777778889999999
Q ss_pred c-cchhhHHHHHHHHHHHHHHH
Q 043105 256 E-KFGGILGLSVTFIALMYVGF 276 (426)
Q Consensus 256 ~-~~~~~~~~~~~~~~~~Y~~~ 276 (426)
+ ..++....+..+...+|+.+
T Consensus 253 q~~IP~GaL~Ai~vst~~yl~~ 274 (643)
T KOG2083|consen 253 QKAIPLGALLAIGVSTLLYLIF 274 (643)
T ss_pred hhhcccchhhhhhhhhhhhhhh
Confidence 5 58999999999999999654
No 82
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=97.37 E-value=0.11 Score=49.95 Aligned_cols=222 Identities=10% Similarity=-0.051 Sum_probs=108.3
Q ss_pred ccchhhhHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhh--hhhh
Q 043105 106 INSFGDLGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNS--IATL 183 (426)
Q Consensus 106 ~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~--~~~l 183 (426)
..+..|..++.+||+..+...+...+.......+.....+..++.+++ . ....+.. +..+..+.+.. .++.
T Consensus 41 g~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g-~-----~~~~~~~-~~~~~~~~ll~~~~~~y 113 (358)
T PF01566_consen 41 GKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLFG-I-----PLWIWVL-LVAVIAILLLWLSSGGY 113 (358)
T ss_pred CCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C-----CcHHHHH-HHHHHHHHHHHHHhccc
Confidence 348888889999999999998888888888888888777777776652 2 1122222 22222222223 5667
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhhhhhhhccCCccc--cccCChhhHHHHHHHHHhhhccceeeccchhhccc---c---
Q 043105 184 THLAPLSIFADVVDLAATAVVMVDEVVISLKQMPEV--AAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEK---K--- 255 (426)
Q Consensus 184 ~~l~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~---p--- 255 (426)
|.+.++.......+.+..+.......++.....+.. +..+....+...++.+-.....|.....-+-..++ +
T Consensus 114 ~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~~~~~g~~~P~~p~~~~~~~~valiGttv~p~~lf~~s~~~~~k~~~~~~~ 193 (358)
T PF01566_consen 114 RRLERILKVLVAVMVLAFLIAAFIVHPDWGEVARGLVVPSIPGPGSLLFAVALIGTTVMPHNLFLHSSLVQEKGWTGNRS 193 (358)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhhhccCCCCcchhHHHHHHHHHHHhhhHHHHHHHHHHhhhcccCCCcc
Confidence 777666655444443333322222212111000010 11111133444444433333333322211111111 1
Q ss_pred ------ccchhhHHHHHHHHHHHHHHHHhHhhhhcC-Ccc--c--cc---hhccc-CCchHHHHHHHHHHHHHHhhhccc
Q 043105 256 ------EKFGGILGLSVTFIALMYVGFGVLGYFAFG-SET--K--DI---ITANL-GAGFVSVLVQLGLCINLFFTFPLM 320 (426)
Q Consensus 256 ------~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg-~~~--~--~~---i~~~~-~~~~~~~~~~~~~~~~~~~s~pl~ 320 (426)
+..++-...++.+..++-..+=+.+...+. +.. . ++ .++.. +.++...+..++.....+.+....
T Consensus 194 ~~~~~l~~~~~D~~~g~~~~~li~~ai~i~~A~~l~~~~~~~~~~~~~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~ 273 (358)
T PF01566_consen 194 RPDEALKYARFDTIIGMIVSFLINVAILIVAAAVLYPGGSEVETAAQAAQALEPLLGSPWARYLFAIGLFAAGFSSSITA 273 (358)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHh
Confidence 112334455665555555555444444443 211 1 11 22322 224556666666666666666655
Q ss_pred hhhHHHHHHHhhcC
Q 043105 321 MHPVYEIVERRFKG 334 (426)
Q Consensus 321 ~~~~~~~~~~~~~~ 334 (426)
.......+.+.++.
T Consensus 274 ~~~~~~~~~~~~~~ 287 (358)
T PF01566_consen 274 TLAGAYVLADFLGW 287 (358)
T ss_pred ccccceehHhhhcC
Confidence 55555566666653
No 83
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=97.35 E-value=0.13 Score=52.28 Aligned_cols=114 Identities=13% Similarity=0.121 Sum_probs=76.4
Q ss_pred CCCCCChHHHHHHHHHHhhhhhhc-hhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhh
Q 043105 34 PAPLSSQTKTFANVFIAIVGAGVL-GLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDL 112 (426)
Q Consensus 34 ~~~~~s~~~~~~~l~~s~iG~Gil-~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l 112 (426)
..+-.++.....=.+..+.|.=.+ =|-+.+..+|...+..+.+++++.+.+|+.-+......= .-|...+|.-+
T Consensus 111 a~~mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNG-----VVpaGGsYfmI 185 (1075)
T KOG2082|consen 111 AARMGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNG-----VVPAGGSYFMI 185 (1075)
T ss_pred ccccceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----cccCCCeeEEE
Confidence 334555555555666666665433 467888889999999999999988888887665433321 12566678776
Q ss_pred HHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHH-Hhh
Q 043105 113 GFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVY-FFR 153 (426)
Q Consensus 113 ~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~-~~~ 153 (426)
++ .+|+-.+-.+.+++.+........|++..-+.+-. ++|
T Consensus 186 SR-sLGPEFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P 226 (1075)
T KOG2082|consen 186 SR-SLGPEFGGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFP 226 (1075)
T ss_pred ec-ccCccccceeeehhhhhhHHHHHHHHHhHHHHHHHHHcc
Confidence 64 56666666677777777777777788777776543 444
No 84
>PRK10484 putative transporter; Provisional
Probab=97.33 E-value=0.23 Score=50.35 Aligned_cols=155 Identities=14% Similarity=0.136 Sum_probs=82.2
Q ss_pred CCCCCChHHHHHHHHHHhhhhh-hchhhHHHhccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccccCCccccchhh
Q 043105 34 PAPLSSQTKTFANVFIAIVGAG-VLGLPYAFKRTGWLMGSLMIISVSALTF-HCMMLLVHTRRKLESSEHGFTKINSFGD 111 (426)
Q Consensus 34 ~~~~~s~~~~~~~l~~s~iG~G-il~lP~~~~~~G~~~g~i~l~~~~~~~~-~t~~~l~~~~~~~~~~~~~~~~~~~y~~ 111 (426)
..|+.+++-..+.+..+.++++ .++.|....+.|+.... ... .+.+.. .....+..-.++ .+..|.+|
T Consensus 36 agR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~-~~~-~~~~~~~~~~~~~~p~~~r--------~~~~T~~e 105 (523)
T PRK10484 36 AGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMA-WEV-TAAIALIILALIFLPRYLK--------SGITTIPD 105 (523)
T ss_pred cCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHH-HHH-HHHHHHHHHHHHHHHHHHh--------cCCccHHH
Confidence 4688899988888888888777 55788777677754311 111 111111 122222222222 36679999
Q ss_pred hHHHHhcccchhHHHHHHHHHhhhhHHHHH-HHHHHhHHHHhhccccCCCch--hHHH-HHHHHHHHHHhhhhhhhhhhh
Q 043105 112 LGFVVCGSIGRGIVDVLIILSQAGFCISYL-MFIANTLVYFFRTSTILGMSA--KGFY-IWSCLPFQLGLNSIATLTHLA 187 (426)
Q Consensus 112 l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~-i~~~~~l~~~~~~~~~~~~~~--~~~~-~~i~~~~~~pl~~~~~l~~l~ 187 (426)
+.++.||++.+.+......+.......... ...+..++.++......+.+. ..+. .++..++........+++...
T Consensus 106 ~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV~ 185 (523)
T PRK10484 106 FLEERYDKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELLGISYGAAIWLLVWLIGIIGAIYAVFGGLKAVA 185 (523)
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 999999999887766655544333322222 222333333322110011111 1121 122334445667778888888
Q ss_pred HHHHHHHHHHH
Q 043105 188 PLSIFADVVDL 198 (426)
Q Consensus 188 ~~s~~~~~~~~ 198 (426)
+...+=.+.++
T Consensus 186 ~TD~iQ~vim~ 196 (523)
T PRK10484 186 VSDTINGIGLL 196 (523)
T ss_pred HHHHHHHHHHH
Confidence 76655544433
No 85
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=97.32 E-value=0.16 Score=49.45 Aligned_cols=324 Identities=13% Similarity=0.137 Sum_probs=153.5
Q ss_pred ChHHHHHHHHHHhhhhhhchhhHHHh-ccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhHHH
Q 043105 39 SQTKTFANVFIAIVGAGVLGLPYAFK-RTG--WLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGFV 115 (426)
Q Consensus 39 s~~~~~~~l~~s~iG~Gil~lP~~~~-~~G--~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~ 115 (426)
.....-+.+..--.|+|=|-.|-... ++| |..+.+..++.++.--. +....... .+.++++++++
T Consensus 4 ~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~----Lgvia~~~--------~~~~~~~l~~~ 71 (427)
T PF05525_consen 4 DILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPL----LGVIAVAK--------SGGGIEDLASR 71 (427)
T ss_pred hhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHH----HHHHHHhh--------cCCCHHHHhcc
Confidence 34455667778889999999987654 333 66666666655554332 32222221 12278887776
Q ss_pred HhcccchhHHHHHHHHHhhhhHH--HHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 043105 116 VCGSIGRGIVDVLIILSQAGFCI--SYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFA 193 (426)
Q Consensus 116 ~~G~~~~~i~~~~~~~~~~g~~~--~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 193 (426)
.--+.+..+..+.+....-...+ .-.....-.+.++++.. .......+..+.+.+.+-++ .+.=|-+.++.-+-
T Consensus 72 v~~~f~~if~~~i~l~IGP~~aiPRtaa~sfe~~i~p~~~~~---~~~~~~ifs~iFF~i~~~l~-~~p~kivd~iGk~L 147 (427)
T PF05525_consen 72 VGPKFALIFTILIYLSIGPLFAIPRTAAVSFEMGIAPFFPEN---SNISLLIFSIIFFAITYLLS-LNPSKIVDRIGKFL 147 (427)
T ss_pred cCcHHHHHHHHHHHHHHHhcccCcchhhhhHHHhhhccCCcc---cccchhhhhHHHHHHHHHHH-hchhhHHHHHHHHH
Confidence 55444443332222221111110 11111112223333321 11222333333333333333 33444445555555
Q ss_pred HHHHHHHhhhhhhhhhhhhccCCcccc------cc----CChhhHHHHHHHHHhhhccceeeccchhhccccccchh---
Q 043105 194 DVVDLAATAVVMVDEVVISLKQMPEVA------AF----GNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKEKFGG--- 260 (426)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~--- 260 (426)
+...+..+.++++.++.....+..+.. .+ -+-.+..++++-+.|+-.....+- .+..+|+|+..|
T Consensus 148 TP~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~iIi~~i~--~~g~~~~k~~~~~~~ 225 (427)
T PF05525_consen 148 TPILLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGIIIINAIR--QKGYKDKKEIKKYTI 225 (427)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH--HhCCCCHHHHHHHHH
Confidence 555555555555555443221111111 11 012344455555555543221111 112334444433
Q ss_pred -hHHHHHHHHHHHHHHHHhHhhhhcCC---ccc-cchhcccCCc----hHHHHHHHHHHHHHHhhhccchhhHHHHHHHh
Q 043105 261 -ILGLSVTFIALMYVGFGVLGYFAFGS---ETK-DIITANLGAG----FVSVLVQLGLCINLFFTFPLMMHPVYEIVERR 331 (426)
Q Consensus 261 -~~~~~~~~~~~~Y~~~g~~gy~~fg~---~~~-~~i~~~~~~~----~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~ 331 (426)
+-.++...-.++|...+..|...-+. +.+ ++++.+..+. .-..+..+...+..+++-.-....+.|.+++.
T Consensus 226 ~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~ 305 (427)
T PF05525_consen 226 KAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSEL 305 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666677777777777665432 222 2333333221 11223334444444555555556677888888
Q ss_pred hcCCcchhHHHHHHHHHHHHHHhhcCCccchhhhhchhhhhhhHhHHHHHHHHHHh
Q 043105 332 FKGGEYCLWLRWLLVFLVSLVAMSVPNFADFLSLVGSSVCCGLGFVLPALFHLLVF 387 (426)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~G~~~~~~~~~ilP~l~~l~~~ 387 (426)
+++-+++.| ..+.+++++++|. -.++.++++ +..++.+++|...-+.+.
T Consensus 306 ~~kisY~~~-v~i~~i~S~~ian--~Gl~~Ii~~----s~PiL~~iYP~~IvLIll 354 (427)
T PF05525_consen 306 FPKISYKVW-VIIFTIFSFIIAN--LGLDQIIKI----SVPILMFIYPVAIVLILL 354 (427)
T ss_pred hcccChHHH-HHHHHHHHHHHHH--hCHHHHHHH----HHHHHHHHhHHHHHHHHH
Confidence 884444333 2333344444433 346777776 467899999999877763
No 86
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=96.99 E-value=0.033 Score=52.25 Aligned_cols=105 Identities=20% Similarity=0.200 Sum_probs=80.3
Q ss_pred CCChHHHHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccccCCccccchhhhHHH
Q 043105 37 LSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVH-TRRKLESSEHGFTKINSFGDLGFV 115 (426)
Q Consensus 37 ~~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~-~~~~~~~~~~~~~~~~~y~~l~~~ 115 (426)
..+.+-.+-+=..++=|+|-..=|..-..-||.++.+..++.+.+..--.....- .+.|. +..+.+|++++
T Consensus 51 P~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~--------~G~Si~~i~~~ 122 (376)
T PF02554_consen 51 PTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRH--------KGKSIGEIAGK 122 (376)
T ss_pred CCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcC--------CCccHHHHHHH
Confidence 3556677788889999999888898889999999888887776665554444433 22333 55699999999
Q ss_pred HhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHH
Q 043105 116 VCGSIGRGIVDVLIILSQAGFCISYLMFIANTLV 149 (426)
Q Consensus 116 ~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~ 149 (426)
..||+++.+..+..++.+......+.....+.+.
T Consensus 123 ~lG~~~~~lf~~f~~~~lilV~avF~~v~a~~~~ 156 (376)
T PF02554_consen 123 YLGKRAKKLFLIFIFFLLILVIAVFADVVANTFV 156 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999988887777776666655543
No 87
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=96.26 E-value=1.2 Score=43.05 Aligned_cols=157 Identities=13% Similarity=-0.008 Sum_probs=88.2
Q ss_pred CCCCCCChHHHHHHHHHHhhhhh-hchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhh
Q 043105 33 KPAPLSSQTKTFANVFIAIVGAG-VLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGD 111 (426)
Q Consensus 33 ~~~~~~s~~~~~~~l~~s~iG~G-il~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~ 111 (426)
+.++..|.+|+...-..+-+|+| +-+..-+..-.| ..++..+=+.+++..-|.+.-.....+++.+.++..-+..-.-
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GG-PGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~y 136 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGG-PGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAY 136 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCC-CccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHH
Confidence 45678999999999999999999 556777777555 3345555444444444444433344444332111111111112
Q ss_pred hHHHHhcccc-hhHHHHHHHHHhhh--hHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhH
Q 043105 112 LGFVVCGSIG-RGIVDVLIILSQAG--FCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAP 188 (426)
Q Consensus 112 l~~~~~G~~~-~~i~~~~~~~~~~g--~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 188 (426)
.-++-+|.++ +.+.. +..+..+| .+..-...+.+.++.-++- ..++.-+...++..+....++|++++
T Consensus 137 Yi~kGl~~r~l~v~FA-~~li~afg~i~n~vQ~NsIa~a~~~af~~--------~~~~~gi~la~l~~~VI~GGi~rIa~ 207 (452)
T COG1115 137 YIEKGLGMRWLAVLFA-FALIAAFGFIGNGVQSNSIASALANAFGI--------PPLVTGIVLALLVALVIFGGIKRIAK 207 (452)
T ss_pred HHHhhcCCcHHHHHHH-HHHHHHHHhhcchhhHHHHHHHHHHhcCC--------cHHHHHHHHHHHHHHHHHcchHHHHH
Confidence 2455565543 33333 33333333 3444444555555554332 34555566666666778899999999
Q ss_pred HHHHHHHHHHH
Q 043105 189 LSIFADVVDLA 199 (426)
Q Consensus 189 ~s~~~~~~~~~ 199 (426)
++......+..
T Consensus 208 v~~~vVPfMA~ 218 (452)
T COG1115 208 VSSKVVPFMAI 218 (452)
T ss_pred HHHHHHHHHHH
Confidence 88876655544
No 88
>PHA02764 hypothetical protein; Provisional
Probab=96.18 E-value=1 Score=41.41 Aligned_cols=95 Identities=9% Similarity=0.001 Sum_probs=62.0
Q ss_pred CCCCCCChHHHHH-HHHHHhhhhhhchhhHHHhcc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccch
Q 043105 33 KPAPLSSQTKTFA-NVFIAIVGAGVLGLPYAFKRT--GWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSF 109 (426)
Q Consensus 33 ~~~~~~s~~~~~~-~l~~s~iG~Gil~lP~~~~~~--G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y 109 (426)
.--|+.+.+++++ ++.....|.++ +.|+-+... |.. .+...+++++++...+...++.....|+. ++.+.|
T Consensus 9 GLVREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSAmPrA----GGdYVY 82 (399)
T PHA02764 9 GIIKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTKFPLN----GGDYAY 82 (399)
T ss_pred CceeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhCCCC----CceEEE
Confidence 3457788999998 44444445443 556533322 333 35566777777777777777877777542 444444
Q ss_pred hhhHHHHhcccchhHHHHHHHHHhhhh
Q 043105 110 GDLGFVVCGSIGRGIVDVLIILSQAGF 136 (426)
Q Consensus 110 ~~l~~~~~G~~~~~i~~~~~~~~~~g~ 136 (426)
.++++|++.+.+..+..+......
T Consensus 83 ---ISRAFGP~~GFLvG~a~WLtl~~G 106 (399)
T PHA02764 83 ---IRTAFSSKFYTIFGISLWLTYVLS 106 (399)
T ss_pred ---hHHhhCccHHHHHHHHHHHHHHhh
Confidence 889999999998888877654443
No 89
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=96.18 E-value=1.4 Score=42.92 Aligned_cols=172 Identities=10% Similarity=0.008 Sum_probs=100.7
Q ss_pred cccchhhhHHHHhcc-cchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhh
Q 043105 105 KINSFGDLGFVVCGS-IGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATL 183 (426)
Q Consensus 105 ~~~~y~~l~~~~~G~-~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 183 (426)
++++..|....-++. +.|.+..+.-.+..+.-.++-+...+..+..+++-. ...-+.+..+++.......++
T Consensus 102 GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv~-------~~vgv~ig~ilm~~Yvv~GGM 174 (529)
T COG4147 102 GKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGVP-------YHVGVVIGGILMMVYVVLGGM 174 (529)
T ss_pred CCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCC-------ceeehhhHhHHHHHHHHhcch
Confidence 667999986555554 577777766666666667777777888888877642 222233445555566778889
Q ss_pred hhhhHHHHHHHHHHHHHhhhh----hhhhhhhh---------ccCC---ccccccC-ChhhHHHHHHHHHhhhccceeec
Q 043105 184 THLAPLSIFADVVDLAATAVV----MVDEVVIS---------LKQM---PEVAAFG-NLSVFFYGIGVAVYAFEGIGMVL 246 (426)
Q Consensus 184 ~~l~~~s~~~~~~~~~~~~~~----i~~~~~~~---------~~~~---~~~~~~~-~~~~~~~~~~~~~faf~~~~~i~ 246 (426)
+...|.+.+=-+..+....+. ..+..... .++. .+...+. ..++-.+.++...--..|..-+|
T Consensus 175 ~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLP 254 (529)
T COG4147 175 KATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLP 254 (529)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCCCC
Confidence 998888765444333322221 11111000 0111 0111111 12344445554444445666777
Q ss_pred cchhhccc-c--ccchhhHHHHHHHHHHHHHHHHhHhhhh
Q 043105 247 PLEAEMEK-K--EKFGGILGLSVTFIALMYVGFGVLGYFA 283 (426)
Q Consensus 247 ~i~~~m~~-p--~~~~~~~~~~~~~~~~~Y~~~g~~gy~~ 283 (426)
++.-..-. | |+-+|++.++...+..+|+..-..|+.+
T Consensus 255 Hil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A 294 (529)
T COG4147 255 HILMRFFTVPDAKEARKSVFWATGFIGIFYILTPIIGAGA 294 (529)
T ss_pred eEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77543322 3 6788999999999999999876666653
No 90
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=96.10 E-value=1.5 Score=42.74 Aligned_cols=318 Identities=14% Similarity=0.074 Sum_probs=147.5
Q ss_pred ChHHHHHHHHHHhhhhhhchhhHHHh-ccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhHHH
Q 043105 39 SQTKTFANVFIAIVGAGVLGLPYAFK-RTG--WLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGFV 115 (426)
Q Consensus 39 s~~~~~~~l~~s~iG~Gil~lP~~~~-~~G--~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~ 115 (426)
..+..-+.++.--.|+|=|-.|-... ++| |..+.+..++.++. .-++.-..... .+.+++|++++
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~Vg----lPlLgiiava~--------~~g~~~~l~~r 76 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVG----LPVLTVVALAK--------VGGGVDSLSTP 76 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHH----HHHHHHHHHhh--------cCCCHHHHhhh
Confidence 45666778888889999999987654 344 55555555444432 33333222221 11378887776
Q ss_pred HhcccchhHHHHHHHHHhhh------hHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 043105 116 VCGSIGRGIVDVLIILSQAG------FCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPL 189 (426)
Q Consensus 116 ~~G~~~~~i~~~~~~~~~~g------~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~ 189 (426)
.-.+.+..+...++....-. ..++|-+. +++++++ +......+.++.+.+.+-++. |.=|-+.++
T Consensus 77 v~~~f~~~f~~~i~l~IGP~~aiPRtaavsfEm~----i~p~~~~----~~~~~~ifs~iFF~i~~~l~l-~p~klvd~i 147 (439)
T PRK15433 77 IGKVAGVLLATVCYLAVGPLFATPRTATVSFEVG----IAPLTGD----SALPLFIYSLVYFAIVILVSL-YPGKLLDTV 147 (439)
T ss_pred cchHHHHHHHHHHHHHHhhccccCCccccchhhe----eeccCCc----ccHHHHHHHHHHHHHHHHHHc-ChhhHHHHh
Confidence 65444433322222211111 11111111 2222221 001112222333333333333 333333444
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhccC---C-ccc--ccc----CChhhHHHHHHHHHhhhccceeeccchhhccccccch
Q 043105 190 SIFADVVDLAATAVVMVDEVVISLKQ---M-PEV--AAF----GNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKEKFG 259 (426)
Q Consensus 190 s~~~~~~~~~~~~~~i~~~~~~~~~~---~-~~~--~~~----~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~ 259 (426)
.-+-+...+..+.+++..++.....+ . .+. ..+ .+-.+..++++.+.|+......+- .+..+|+|+..
T Consensus 148 GK~LTP~LL~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~iii~~i~--~~G~~~~~~~~ 225 (439)
T PRK15433 148 GNFLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAAR--SRGVTEARLLT 225 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--HcCCCCHHHHH
Confidence 44444444444444444333321111 1 111 111 123466667777777754433321 22355655444
Q ss_pred h----hHHHHHHHHHHHHHHHHhHhhhh---cCCc-cccchhcccCC----chHHHHHHHHHHHHHHhhhccchhhHHHH
Q 043105 260 G----ILGLSVTFIALMYVGFGVLGYFA---FGSE-TKDIITANLGA----GFVSVLVQLGLCINLFFTFPLMMHPVYEI 327 (426)
Q Consensus 260 ~----~~~~~~~~~~~~Y~~~g~~gy~~---fg~~-~~~~i~~~~~~----~~~~~~~~~~~~~~~~~s~pl~~~~~~~~ 327 (426)
| +-.++.+.-.++|...+..|... +++. ..++++...-. ++...+..+...+.++++-.-....+.+.
T Consensus 226 k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~ 305 (439)
T PRK15433 226 RYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEF 305 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 34556666677787777777654 2221 12333333211 22233333444455555555555566666
Q ss_pred HHHhhcCCcchhHHHHHHHHHHHHHHhhcCCccchhhhhchhhhhhhHhHHHHHHHHHHh
Q 043105 328 VERRFKGGEYCLWLRWLLVFLVSLVAMSVPNFADFLSLVGSSVCCGLGFVLPALFHLLVF 387 (426)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~G~~~~~~~~~ilP~l~~l~~~ 387 (426)
+++.+. .+++ +...+.+.+++.+|. -.+++++++ ...++.+++|...-+.+.
T Consensus 306 f~~~~~-isY~-~~v~i~~l~S~~lSn--~G~~~II~~----s~PiL~~iYP~~IvLill 357 (439)
T PRK15433 306 FAQYVP-LSYR-TLVFILGGFSMVVSN--LGLSQLIQI----SVPVLTAIYPPCIALVVL 357 (439)
T ss_pred HHhhcC-CcHH-HHHHHHHHHHHHHHH--hHHHHHHHH----HHHHHHHHhHHHHHHHHH
Confidence 666654 2222 222333333333332 236666665 567889999998777653
No 91
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=95.98 E-value=2.2 Score=43.36 Aligned_cols=101 Identities=6% Similarity=0.097 Sum_probs=49.6
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHHhhhhhhhhhhhh--ccC-----CccccccCChhhHHHHHHHHHhhhcc-ceeec
Q 043105 175 LGLNSIATLTHLAPLSIFADVVDLAATAVVMVDEVVIS--LKQ-----MPEVAAFGNLSVFFYGIGVAVYAFEG-IGMVL 246 (426)
Q Consensus 175 ~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~i~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~faf~~-~~~i~ 246 (426)
.-+...|++|...++.......-.+.+.+..++..... .++ .+|.....+.+-...|++...|+.+. ...+.
T Consensus 191 v~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~~i 270 (523)
T PF00209_consen 191 VFFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLLDPKVWIAALGQVFFSLSIGFGIMI 270 (523)
T ss_dssp HTTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTTSHHHHHHHHHHHHHHTTTTSSHHH
T ss_pred HHHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhhHHHHHHHHHHHHhhccCCCcceEE
Confidence 44556788888877766554322222222222221110 000 11222222334457789999999954 55555
Q ss_pred cchhhccccccchhhHHHHHHHHHHHHHH
Q 043105 247 PLEAEMEKKEKFGGILGLSVTFIALMYVG 275 (426)
Q Consensus 247 ~i~~~m~~p~~~~~~~~~~~~~~~~~Y~~ 275 (426)
...+.+|++++..|........-...-++
T Consensus 271 t~~Sy~~~~~n~~~~a~~v~~~~~~~sll 299 (523)
T PF00209_consen 271 TYGSYNKFKNNIFRDALIVAFINTLVSLL 299 (523)
T ss_dssp HHHTTS-TTS-SHHHHHHHHHHHHHHHHT
T ss_pred EEcCcCCCCccccccceEEEcCchhhhHh
Confidence 56666666677777655444444444443
No 92
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=95.47 E-value=0.62 Score=46.04 Aligned_cols=102 Identities=18% Similarity=0.172 Sum_probs=73.5
Q ss_pred CChHHHHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccccCCccccchhhhHHHH
Q 043105 38 SSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVH-TRRKLESSEHGFTKINSFGDLGFVV 116 (426)
Q Consensus 38 ~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~-~~~~~~~~~~~~~~~~~y~~l~~~~ 116 (426)
.+.+-.+-+=+.++=|+|-+.=|.--++.||.++.+.+++.+++..--...+.- .+.| ++..+.+|++++.
T Consensus 52 tnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR--------~~G~Si~~ia~~~ 123 (575)
T COG1966 52 TNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVR--------HGGKSIGEIAGKY 123 (575)
T ss_pred CCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeec--------cCCccHHHHHHHH
Confidence 445566667778899999999999999999999988888777665544444332 2223 3556999999999
Q ss_pred hcccchhHHHHHHHHHhhhhHHHHHHHHHHh
Q 043105 117 CGSIGRGIVDVLIILSQAGFCISYLMFIANT 147 (426)
Q Consensus 117 ~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~ 147 (426)
.|++.+.+..+...+................
T Consensus 124 lG~~a~~~~~~~~l~iliiv~Avfa~vv~~~ 154 (575)
T COG1966 124 LGRTAKVFFLLLALILLILVGAVFAAVIAKL 154 (575)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888877775555554444444333
No 93
>PRK15015 carbon starvation protein A; Provisional
Probab=95.09 E-value=0.41 Score=48.38 Aligned_cols=100 Identities=22% Similarity=0.229 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccccCCccccchhhhHHHHhcc
Q 043105 41 TKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVH-TRRKLESSEHGFTKINSFGDLGFVVCGS 119 (426)
Q Consensus 41 ~~~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~-~~~~~~~~~~~~~~~~~y~~l~~~~~G~ 119 (426)
+-.+-|=+.++=|+|-+.=|..-.+.||.++.+..++..++..--..+..- .+.| ++.++..|++++..||
T Consensus 86 ~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R--------~~GrSig~ia~~~iG~ 157 (701)
T PRK15015 86 KVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTR--------RDGRSLGELVKEEMGP 157 (701)
T ss_pred cchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeec--------CCCccHHHHHHHHhhH
Confidence 345567778899999999999888999999988887766654443333332 2333 3556999999999999
Q ss_pred cchhHHHHHHHHHhhhhHHHHHHHHHHhH
Q 043105 120 IGRGIVDVLIILSQAGFCISYLMFIANTL 148 (426)
Q Consensus 120 ~~~~i~~~~~~~~~~g~~~~y~i~~~~~l 148 (426)
+++.+..+..++..............+.+
T Consensus 158 ~~~~lfli~i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 158 TAGVIALVACFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888877776666666555555544
No 94
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=92.38 E-value=2.5 Score=40.70 Aligned_cols=51 Identities=10% Similarity=0.120 Sum_probs=46.5
Q ss_pred ccccchhhhHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhc
Q 043105 104 TKINSFGDLGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRT 154 (426)
Q Consensus 104 ~~~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 154 (426)
++..-..+++++.+|+.++.+..+...+.|+.++++.....+|+.+++.+.
T Consensus 252 ~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k 302 (378)
T TIGR00796 252 NGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK 302 (378)
T ss_pred CcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 466677888999999999999999999999999999999999999998764
No 95
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=90.69 E-value=9.9 Score=37.22 Aligned_cols=82 Identities=16% Similarity=0.241 Sum_probs=59.7
Q ss_pred CccccchhhhHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhh
Q 043105 103 FTKINSFGDLGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIAT 182 (426)
Q Consensus 103 ~~~~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~ 182 (426)
.++..-..+++++.+|+.|..+..++..+.|+-++++-....+|+.++.++.. +.+.|.. +..++...++.. +
T Consensus 257 ~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~ki-----sY~~~v~-i~~i~S~~ian~-G 329 (427)
T PF05525_consen 257 INGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKI-----SYKVWVI-IFTIFSFIIANL-G 329 (427)
T ss_pred CCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----ChHHHHH-HHHHHHHHHHHh-C
Confidence 35666777889999999999999999999999999999999999999998843 3344443 444444433332 4
Q ss_pred hhhhhHHHH
Q 043105 183 LTHLAPLSI 191 (426)
Q Consensus 183 l~~l~~~s~ 191 (426)
++++-.++.
T Consensus 330 l~~Ii~~s~ 338 (427)
T PF05525_consen 330 LDQIIKISV 338 (427)
T ss_pred HHHHHHHHH
Confidence 455444443
No 96
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=85.81 E-value=36 Score=33.07 Aligned_cols=82 Identities=10% Similarity=-0.100 Sum_probs=46.1
Q ss_pred cccchhhhHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHH--HHHHHHHhhhhhh
Q 043105 105 KINSFGDLGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWS--CLPFQLGLNSIAT 182 (426)
Q Consensus 105 ~~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i--~~~~~~pl~~~~~ 182 (426)
...+..|..++.++|+.++...+...+...+.........+..++.+++. . ..+..++ ...+.+.+...++
T Consensus 62 Tg~~l~~~~r~~~~~~~~~~~~~~~~l~ii~~~~~e~~G~a~al~ll~g~------p-~~~~v~~~~~~~~~~~~~~~~~ 134 (390)
T TIGR01197 62 TGLDLAEVCREHYPKVPRITLWILAELAIIATDMAEVIGTAIALNLLSHI------P-LWGGVLITIVDVFLFLFLDKPG 134 (390)
T ss_pred cCCCHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------c-HHHHHHHHHHHHHHHHHHHhCC
Confidence 34489999999999887776665555555556666655555566655442 1 1222222 2222233344566
Q ss_pred hhhhhHHHHHH
Q 043105 183 LTHLAPLSIFA 193 (426)
Q Consensus 183 l~~l~~~s~~~ 193 (426)
.+.+.++-..-
T Consensus 135 yr~~E~~~~~l 145 (390)
T TIGR01197 135 LRILEAFVALL 145 (390)
T ss_pred ceeHHHHHHHH
Confidence 67766664433
No 97
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=84.66 E-value=40 Score=32.65 Aligned_cols=122 Identities=15% Similarity=0.178 Sum_probs=61.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhHhhhhc---CCccc-cchhcccCCchHHHHHH----HHHHHHHHhhhccchhhHHHHHHH
Q 043105 259 GGILGLSVTFIALMYVGFGVLGYFAF---GSETK-DIITANLGAGFVSVLVQ----LGLCINLFFTFPLMMHPVYEIVER 330 (426)
Q Consensus 259 ~~~~~~~~~~~~~~Y~~~g~~gy~~f---g~~~~-~~i~~~~~~~~~~~~~~----~~~~~~~~~s~pl~~~~~~~~~~~ 330 (426)
.++-.++.+.-..+|...+..|-..- ++..+ ..++....+..+....+ ....+..+++-......+.|.+.+
T Consensus 227 ~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~ 306 (431)
T COG1114 227 IKAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSK 306 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666777877777773322 11111 23333332222212222 222333334434444556677777
Q ss_pred hhcCCcchhHHHHHHHHHHHHHHhhcCCccchhhhhchhhhhhhHhHHHHHHHHHHh
Q 043105 331 RFKGGEYCLWLRWLLVFLVSLVAMSVPNFADFLSLVGSSVCCGLGFVLPALFHLLVF 387 (426)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~G~~~~~~~~~ilP~l~~l~~~ 387 (426)
.+.+-+++.|. .+...+++++|. -.+++++.+ +...+.+++|....+...
T Consensus 307 ~~p~~SY~~~v-~if~i~sflvan--~GL~~Ii~i----svPvL~~iYPiaI~Lv~l 356 (431)
T COG1114 307 LVPKLSYKTWV-IIFTLISFLVAN--LGLEQIIKI----SVPVLTAIYPIAIALVLL 356 (431)
T ss_pred hcccccHHHHH-HHHHHHHHHHHH--hhHHHHHHH----HHHHHHHHhHHHHHHHHH
Confidence 76644444332 233333444332 346666655 567899999988766653
No 98
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=83.94 E-value=41 Score=32.13 Aligned_cols=243 Identities=10% Similarity=-0.023 Sum_probs=121.5
Q ss_pred CCCChHHHHHHHHHHhhhhh-hchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhHH
Q 043105 36 PLSSQTKTFANVFIAIVGAG-VLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGF 114 (426)
Q Consensus 36 ~~~s~~~~~~~l~~s~iG~G-il~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~~ 114 (426)
|+.+.+--.+....+=+|+. .++=|.+..+.|..+ ..+..+=-...+++...+.+=..+..++ .+.-+..|+-+
T Consensus 39 Rsmgg~VlAmt~~aTYisaSSFigGpgaayk~Glgw-vlLa~iqvp~~~l~lgvlgkk~~~~ar~----~nAltI~D~l~ 113 (473)
T COG4145 39 RSMGGIVLAMTFTATYISASSFIGGPGAAYKYGLGW-VLLAMIQVPTVWLALGVLGKKFAILARE----YNALTINDLLF 113 (473)
T ss_pred CcccceehhhHHHHHHHHHhhhcCCCcHHHHhchHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHH----hCCeeHHHHHH
Confidence 44444444444444545544 445577777777544 2222222233444555555544443332 45668888887
Q ss_pred HHh-cccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHH---H
Q 043105 115 VVC-GSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPL---S 190 (426)
Q Consensus 115 ~~~-G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~---s 190 (426)
+.+ ++.-.++..+...+...+..++-.+..++.++...+-+ ...-+.++...........+.+..... +
T Consensus 114 ~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gid-------Y~tgL~ifa~~V~iYt~fGGFRAvvltD~IQ 186 (473)
T COG4145 114 ARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGID-------YTTGLLIFAVSVAIYTAFGGFRAVVLTDTIQ 186 (473)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCCC-------chhhHHHHHHHHHHHHhhcceeeeehHHHHH
Confidence 765 55567778888888888888888888889888876542 222223334444444455555554322 2
Q ss_pred H-HHHHHHHHHhhhhhhhh--hhhh-------ccCCccccccCC--hhhHHHHHH-HHHhhhccceeeccchhhcccccc
Q 043105 191 I-FADVVDLAATAVVMVDE--VVIS-------LKQMPEVAAFGN--LSVFFYGIG-VAVYAFEGIGMVLPLEAEMEKKEK 257 (426)
Q Consensus 191 ~-~~~~~~~~~~~~~i~~~--~~~~-------~~~~~~~~~~~~--~~~~~~~~~-~~~faf~~~~~i~~i~~~m~~p~~ 257 (426)
- +-.+..+.+..-+++.. ..+. +++...++...+ ..++..++= .++++-.+.+-...=.-..||.|.
T Consensus 187 G~vmligtv~Lf~~~i~~~GG~~~av~tl~~iDp~lv~P~~~~~~l~~~Fm~Sfwilv~~gvlglP~t~vr~ia~kDska 266 (473)
T COG4145 187 GLVMLIGTVVLFVGVIYAGGGLSNAVETLTTIDPGLVTPQGADDILDPPFMASFWILVCFGVLGLPHTAVRCIAFKDSKA 266 (473)
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHhCCccccCCCCCcccccchHHHHHHHHHHHHHhcCcHHHHHHHhccchhH
Confidence 1 11222222222222211 1111 111100011111 122222222 234444444433333334566666
Q ss_pred chhhHHHHHHHHHHHHH---HHHhHhhhhcCCcccc
Q 043105 258 FGGILGLSVTFIALMYV---GFGVLGYFAFGSETKD 290 (426)
Q Consensus 258 ~~~~~~~~~~~~~~~Y~---~~g~~gy~~fg~~~~~ 290 (426)
+.+.+.++..+..++-+ +.|.+|...+.|.+..
T Consensus 267 ih~gmiigt~vi~il~~gmhl~G~~graViPdlt~~ 302 (473)
T COG4145 267 IHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLTVV 302 (473)
T ss_pred HhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCCcc
Confidence 77777776666655554 5677777778776553
No 99
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=83.83 E-value=24 Score=34.17 Aligned_cols=81 Identities=12% Similarity=0.128 Sum_probs=58.8
Q ss_pred ccccchhhhHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhh
Q 043105 104 TKINSFGDLGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATL 183 (426)
Q Consensus 104 ~~~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 183 (426)
++..=..+.+++.||+.+..+...+..+.|.-++++-....+|+..+.++.. +.+.|.. ++.+..+..+ .-++
T Consensus 260 nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~~-----SY~~~v~-if~i~sflva-n~GL 332 (431)
T COG1114 260 NGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPKL-----SYKTWVI-IFTLISFLVA-NLGL 332 (431)
T ss_pred chHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----cHHHHHH-HHHHHHHHHH-HhhH
Confidence 4566677788999999999999999999999999999999999999998854 4445543 3333322222 2345
Q ss_pred hhhhHHHH
Q 043105 184 THLAPLSI 191 (426)
Q Consensus 184 ~~l~~~s~ 191 (426)
+++-.+|.
T Consensus 333 ~~Ii~isv 340 (431)
T COG1114 333 EQIIKISV 340 (431)
T ss_pred HHHHHHHH
Confidence 55544444
No 100
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=82.74 E-value=8.1 Score=39.15 Aligned_cols=236 Identities=12% Similarity=-0.014 Sum_probs=115.9
Q ss_pred CCCCCChHHHHHHHHHHhhhhh-hchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhh
Q 043105 34 PAPLSSQTKTFANVFIAIVGAG-VLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDL 112 (426)
Q Consensus 34 ~~~~~s~~~~~~~l~~s~iG~G-il~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l 112 (426)
..|+..++.....+..+.+|++ ++++|....+.|.......+.. ......+ ++-..+-. -..+..+-.|.
T Consensus 43 ~gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~-----l~~~~~~--~~~f~Pvf--~~~~v~~~~eY 113 (585)
T KOG2349|consen 43 GGRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFEWNA-----LLSVLLL--GWIFIPVF--YRLGVTTMYEY 113 (585)
T ss_pred cCCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHHHHH-----HHHHHhh--heEEEEEE--EecCeeehhHH
Confidence 4577788888888888888887 6789988777775542221111 1111111 11111110 01244566677
Q ss_pred HHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 043105 113 GFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIF 192 (426)
Q Consensus 113 ~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 192 (426)
-++.||++.+....+.+.++.+.-.-.++-.-+-.+++... . +.+ ....+...++.-.....++|..-+.-.+
T Consensus 114 l~~Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg----~--~~~-l~~~~~~~ic~~YT~~GGlkaVi~TDv~ 186 (585)
T KOG2349|consen 114 LEKRFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTG----I--NLY-LIVVILGLICVFYTALGGLKAVIWTDVV 186 (585)
T ss_pred HHHHhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhc----c--Cce-eehHHHHHHHHHHHHhcCeeEEEEhhHH
Confidence 88888888666655555554332222211111122222221 1 111 1122344444445566677766655544
Q ss_pred HHHHHHHHhhhhhhhhhhhh-----------ccCCcccc---------ccCChhhHHHHHHHHHhhhccceeeccchhhc
Q 043105 193 ADVVDLAATAVVMVDEVVIS-----------LKQMPEVA---------AFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEM 252 (426)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~---------~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m 252 (426)
=...++..+..+++.+.... +....+.. ....|+-++.....-...++.+++...=+-.+
T Consensus 187 Q~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~VQR~lsl 266 (585)
T KOG2349|consen 187 QTVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLIVQRYLSL 266 (585)
T ss_pred HHHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHHHhHHhcc
Confidence 44444444444443332211 00000000 11124433444445556667777776666666
Q ss_pred cccccchhhHHHHHHHHHHH---HHHHHhHhhhhcC
Q 043105 253 EKKEKFGGILGLSVTFIALM---YVGFGVLGYFAFG 285 (426)
Q Consensus 253 ~~p~~~~~~~~~~~~~~~~~---Y~~~g~~gy~~fg 285 (426)
|+-++.++.+.......++. +...|+..|..|-
T Consensus 267 ~slk~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~ 302 (585)
T KOG2349|consen 267 PSLKHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYT 302 (585)
T ss_pred ccHHHhhhhhhhhhhHHHHHHHhhcccceeEeeecc
Confidence 66677777765554444444 4445555555554
No 101
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=77.63 E-value=82 Score=31.62 Aligned_cols=115 Identities=17% Similarity=0.050 Sum_probs=58.7
Q ss_pred CCCCCChHHHHHHHHHHhhhhhhchh----hHHHhcc---c--------hhHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 043105 34 PAPLSSQTKTFANVFIAIVGAGVLGL----PYAFKRT---G--------WLMGSLMIISVSALTFHCMM---LLVHTRRK 95 (426)
Q Consensus 34 ~~~~~s~~~~~~~l~~s~iG~Gil~l----P~~~~~~---G--------~~~g~i~l~~~~~~~~~t~~---~l~~~~~~ 95 (426)
++++-|.++-+..++++-+|+|++.- |....+. | .-.+.-..+.=+.+..++.+ -+.-....
T Consensus 71 ~kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay~~ 150 (485)
T PF02028_consen 71 AKPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAYFF 150 (485)
T ss_dssp S--SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHheee
Confidence 45668999999999999999999864 2221111 1 11222222332333333333 33333444
Q ss_pred hhccccCCccccchhhhHHHHhccc----chhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhh
Q 043105 96 LESSEHGFTKINSFGDLGFVVCGSI----GRGIVDVLIILSQAGFCISYLMFIANTLVYFFR 153 (426)
Q Consensus 96 ~~~~~~~~~~~~~y~~l~~~~~G~~----~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 153 (426)
+++ ++..+.++..+-.+|++ .+.++|.+..+...+....-+-.....+..-+.
T Consensus 151 y~k-----~~~~~~ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~ 207 (485)
T PF02028_consen 151 YNK-----GKPLRISSALYPLLGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGLS 207 (485)
T ss_dssp HTS--------SSGGGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eec-----CCCCchhhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 433 34556666666666643 466777777666666555555444444444333
No 102
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=75.95 E-value=87 Score=31.10 Aligned_cols=247 Identities=11% Similarity=-0.014 Sum_probs=114.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhhhhhchhhHHHhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccc
Q 043105 30 LIGKPAPLSSQTKTFANVFIAIVGAGVLGLPYAFKRTG--WLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKIN 107 (426)
Q Consensus 30 ~~~~~~~~~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G--~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~ 107 (426)
+.++.+|.=++++-+..=....++.+.--+...-.+.| |..+++...+.-.++..-. ..+++ ....=+-
T Consensus 48 Pv~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~~~f~--------~lns~-~G~~yhI 118 (572)
T KOG2466|consen 48 PVPPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLFTAIFL--------VLNSR-PGSDYHI 118 (572)
T ss_pred cCCcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHHHHHHH--------HHccC-CCccccc
Confidence 34556788899988888777777777777776666666 4455555444333222211 11111 0001122
Q ss_pred chhhhHHHHhccc---chhHHHHHHHHHhhhhHHHHHHHHHHhHH----HHhhccc-------cCCCchhHHH-HHHHHH
Q 043105 108 SFGDLGFVVCGSI---GRGIVDVLIILSQAGFCISYLMFIANTLV----YFFRTST-------ILGMSAKGFY-IWSCLP 172 (426)
Q Consensus 108 ~y~~l~~~~~G~~---~~~i~~~~~~~~~~g~~~~y~i~~~~~l~----~~~~~~~-------~~~~~~~~~~-~~i~~~ 172 (426)
+++-..|..||-+ +..+..+.+.+..+|..+ -+.++.++ .++++.+ ..+.....+. ..+.-+
T Consensus 119 sFpv~sR~sFGiygS~~pIi~R~vma~vwYg~~a---wiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv 195 (572)
T KOG2466|consen 119 SFPVLSRSSFGIYGSLWPIINRVVMACVWYGVNA---WIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWV 195 (572)
T ss_pred ceeeeeeeehhhhHhHHHHHHHHHHHHhhhhhhh---hhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHH
Confidence 5555566666554 455666666666666544 12333333 3333322 1122222332 223334
Q ss_pred HHHHhhhhh--hhhhhhHHHHHHHHHHHHHhhhhhhhh-hh--hhccCCccccccCChhhHHHHHHHHHhhh-ccceeec
Q 043105 173 FQLGLNSIA--TLTHLAPLSIFADVVDLAATAVVMVDE-VV--ISLKQMPEVAAFGNLSVFFYGIGVAVYAF-EGIGMVL 246 (426)
Q Consensus 173 ~~~pl~~~~--~l~~l~~~s~~~~~~~~~~~~~~i~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~i~ 246 (426)
+.+|..+.+ .++.+-..+...+....+.+++....- .. ....+..........+.+..++...+-.| ....|.|
T Consensus 196 ~s~~~~~~~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N~p 275 (572)
T KOG2466|consen 196 ASLPFYWFPPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVNAP 275 (572)
T ss_pred HhhheeeccHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccchhhccCc
Confidence 444444432 344444444443333333333222211 11 11111111111111223333333333333 2355667
Q ss_pred cchhhccccccchhhHHHHHHHHHHHHHH----HHhHhhhhcCCcc
Q 043105 247 PLEAEMEKKEKFGGILGLSVTFIALMYVG----FGVLGYFAFGSET 288 (426)
Q Consensus 247 ~i~~~m~~p~~~~~~~~~~~~~~~~~Y~~----~g~~gy~~fg~~~ 288 (426)
...+--|+|.+....-.++..+.+.+.-+ .+..++..||.+-
T Consensus 276 DFsRF~ksp~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~ 321 (572)
T KOG2466|consen 276 DFSRFAKSPNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNY 321 (572)
T ss_pred hhHhhcCCCCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccc
Confidence 77777777766555444444444444444 4455677788763
No 103
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=73.76 E-value=48 Score=32.64 Aligned_cols=76 Identities=12% Similarity=0.082 Sum_probs=54.9
Q ss_pred ccccchhhhHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhh
Q 043105 104 TKINSFGDLGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATL 183 (426)
Q Consensus 104 ~~~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 183 (426)
++..-.....++.+|++++.+..+...+.|+-++++-...++|.+++.++ . . +.++..+..++..+++.. ++
T Consensus 262 ~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-i-----s-Y~~~v~i~~l~S~~lSn~-G~ 333 (439)
T PRK15433 262 NGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-L-----S-YRTLVFILGGFSMVVSNL-GL 333 (439)
T ss_pred cHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C-----c-HHHHHHHHHHHHHHHHHh-HH
Confidence 34445556688999999999999999999999999999999999999865 1 3 333344555555555543 33
Q ss_pred hhhh
Q 043105 184 THLA 187 (426)
Q Consensus 184 ~~l~ 187 (426)
+++-
T Consensus 334 ~~II 337 (439)
T PRK15433 334 SQLI 337 (439)
T ss_pred HHHH
Confidence 4333
No 104
>PLN00151 potassium transporter; Provisional
Probab=72.83 E-value=1.4e+02 Score=31.95 Aligned_cols=134 Identities=11% Similarity=0.161 Sum_probs=62.4
Q ss_pred HHHHHHHHhhhccceeeccchhhcccc-ccchhhHHHHHHHHHHHHHHHHhHhhhhcCC-ccccchhcccCCchHHHHHH
Q 043105 229 FYGIGVAVYAFEGIGMVLPLEAEMEKK-EKFGGILGLSVTFIALMYVGFGVLGYFAFGS-ETKDIITANLGAGFVSVLVQ 306 (426)
Q Consensus 229 ~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~-~~~~~i~~~~~~~~~~~~~~ 306 (426)
+.++|-++.+..|.+. ++++|-+= ++--+..+..+..-+++-.-+|-..|+.=.+ ...+......|+..+-...
T Consensus 347 w~~LGgVvLciTGaEA---LfADLGHFg~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~p~~~~npFy~svP~~~~wP~~- 422 (852)
T PLN00151 347 WSALGGCVLCATGSEA---MFADLGYFSVRSIQLAFTCLVLPCLLLAYMGQAAYLMKNPDSAEQIFFSSVPSSLFWPVF- 422 (852)
T ss_pred EEEecceeeeeccchh---hhcccCCCCccceeeeehhhHHHHHHHHHcchHHHHhcCcccccCcHHHhCCchhHHHHH-
Confidence 3456667777777765 45777762 3322333444444444444556666665322 2233344444543221122
Q ss_pred HHHHHHHHhhhccchhhHHHHHHHhhc----C-------Ccc------hhHHHHHHHHHHHHHHhhcCCccchhhhh
Q 043105 307 LGLCINLFFTFPLMMHPVYEIVERRFK----G-------GEY------CLWLRWLLVFLVSLVAMSVPNFADFLSLV 366 (426)
Q Consensus 307 ~~~~~~~~~s~pl~~~~~~~~~~~~~~----~-------~~~------~~~~~~~~~~~~~~~a~~~~~~~~i~~~~ 366 (426)
+...+.-+.+-.-.+........+... . .+. -...++++.+.+..+.+.+.+-..+-+.=
T Consensus 423 vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw~Lmv~~i~v~l~F~~s~~l~~AY 499 (852)
T PLN00151 423 LIANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINWFLLVMCLVVVCSFRSITDIGNAY 499 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHhheeeecCHHHHHHHh
Confidence 222222222222233333333333322 1 010 11277788887777777776655554443
No 105
>PRK09928 choline transport protein BetT; Provisional
Probab=69.54 E-value=1.5e+02 Score=31.04 Aligned_cols=99 Identities=14% Similarity=0.008 Sum_probs=51.9
Q ss_pred CCCCChHHHHHHHHHHhhhhhhchh----hHHHh-c--cc---h----hHHHHHHHHHHHHHHHHHHH---HHHHHHHhh
Q 043105 35 APLSSQTKTFANVFIAIVGAGVLGL----PYAFK-R--TG---W----LMGSLMIISVSALTFHCMML---LVHTRRKLE 97 (426)
Q Consensus 35 ~~~~s~~~~~~~l~~s~iG~Gil~l----P~~~~-~--~G---~----~~g~i~l~~~~~~~~~t~~~---l~~~~~~~~ 97 (426)
++.-|.++-+..++++-+|+|++.- |..-. + .| - -.+....++=+.+..++.+. +.-+...++
T Consensus 90 kPefS~~sW~aMLFaAGmGigLmfwgvaEP~~h~~~PP~g~~~s~eAa~~Am~~t~FHWG~~aWAiYalvglalAYf~yr 169 (679)
T PRK09928 90 KPEFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMALGYFSYR 169 (679)
T ss_pred CCCCCcchHHHHHHHHhhhhhheeehHHhHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhc
Confidence 4567888889999999999998853 32211 1 11 1 11233333333333333333 333333333
Q ss_pred ccccCCccccchhhhHHHHhccc----chhHHHHHHHHHhhhhHH
Q 043105 98 SSEHGFTKINSFGDLGFVVCGSI----GRGIVDVLIILSQAGFCI 138 (426)
Q Consensus 98 ~~~~~~~~~~~y~~l~~~~~G~~----~~~i~~~~~~~~~~g~~~ 138 (426)
++ ...+.+...+-++|++ .+.+++++.++...+...
T Consensus 170 ~~-----~pl~issal~pllG~ri~G~~G~~IDi~av~~tvfGia 209 (679)
T PRK09928 170 YN-----LPLTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGIA 209 (679)
T ss_pred CC-----CCCchhHhhhhhcCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 32 3356666666666654 345666665554444433
No 106
>TIGR00945 tatC Twin arginine targeting (Tat) protein translocase TatC. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=65.15 E-value=89 Score=27.46 Aligned_cols=40 Identities=10% Similarity=0.267 Sum_probs=31.5
Q ss_pred CCchHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcCCc
Q 043105 297 GAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGGE 336 (426)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~ 336 (426)
+.|....-.++...++...++|...+-.-..+.....+++
T Consensus 53 ~~e~f~~~lk~s~~~g~~~~~P~i~yqiw~Fi~PgLy~~E 92 (215)
T TIGR00945 53 PTEPFFTYIKLSLIVGIILSSPVILYQIWAFILPGLYEHE 92 (215)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 4477888889999999999999998877777766665444
No 107
>PLN02680 carbon-monoxide oxygenase
Probab=63.22 E-value=1.1e+02 Score=27.21 Aligned_cols=94 Identities=17% Similarity=0.267 Sum_probs=62.2
Q ss_pred ChhhHHHHHHHHHhhhccceeeccchhhccccccchhhHHHHHHHHHHHHHHHHhHhhhhcCCccccchhcccCC--chH
Q 043105 224 NLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKEKFGGILGLSVTFIALMYVGFGVLGYFAFGSETKDIITANLGA--GFV 301 (426)
Q Consensus 224 ~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~i~~~~~~--~~~ 301 (426)
++-.++...+.+.. .+...+. ++..+.+|+.+|.+.+..-...++...+|+.....+-++. .+ .|+.+ .|+
T Consensus 48 n~HPlLM~~Gfi~l--~geAIL~--yr~~~~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~--~~-~nfySlHSWl 120 (232)
T PLN02680 48 NVHPVLMVIGLVLL--NGEAMLA--YKTVPGTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEK--GI-DNFYSLHSWL 120 (232)
T ss_pred echHHHHHHHHHHH--HHHHHhc--cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--Cc-cccccHHHHH
Confidence 45566666555542 2222222 3445556778888999988888888889887755555443 33 34433 588
Q ss_pred HHHHHHHHHHHHHhhhccchhhH
Q 043105 302 SVLVQLGLCINLFFTFPLMMHPV 324 (426)
Q Consensus 302 ~~~~~~~~~~~~~~s~pl~~~~~ 324 (426)
.....+++.++.+..+....+|.
T Consensus 121 Gl~t~iL~~lQ~~~Gf~~f~~P~ 143 (232)
T PLN02680 121 GLACLFLFSLQWAAGFVTFWYPG 143 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHccC
Confidence 88888888888888887777774
No 108
>PRK09950 putative transporter; Provisional
Probab=57.65 E-value=2.2e+02 Score=28.81 Aligned_cols=112 Identities=13% Similarity=0.038 Sum_probs=61.2
Q ss_pred CCCCChHHHHHHHHHHhhhhhhchh----hHHHhc---cc--------hhHHHHHHHHHHHHHH---HHHHHHHHHH-HH
Q 043105 35 APLSSQTKTFANVFIAIVGAGVLGL----PYAFKR---TG--------WLMGSLMIISVSALTF---HCMMLLVHTR-RK 95 (426)
Q Consensus 35 ~~~~s~~~~~~~l~~s~iG~Gil~l----P~~~~~---~G--------~~~g~i~l~~~~~~~~---~t~~~l~~~~-~~ 95 (426)
+++-|.++-+..++++-+|+|++.- |....+ .| .-.+....+.=+-+.. |+..-+.-+. ..
T Consensus 81 kPefS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~e~~s~~A~~~A~~~t~fHWG~~aWaiY~l~~l~iaY~~~ 160 (506)
T PRK09950 81 KPEYSTLSWLFMFICAGLGSSTLYWGVMEWAYYYQTPGLNIAPRSPKALEYSVSYSFFHWGISAWATYALASLIMAYHFH 160 (506)
T ss_pred CCCccchhHHHHHHHHhhhhHHHHHhhHhHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4567888889999999999998853 322111 11 1112222222233333 3333333344 22
Q ss_pred hhccccCCccccchhhhHHHHhccc----chhHHHHHHHHHhhhhHHHHHHHHHHhHHHH
Q 043105 96 LESSEHGFTKINSFGDLGFVVCGSI----GRGIVDVLIILSQAGFCISYLMFIANTLVYF 151 (426)
Q Consensus 96 ~~~~~~~~~~~~~y~~l~~~~~G~~----~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~ 151 (426)
+++ ++..+.++..+-.+|++ .+.++|+...+...+....-+-.....+..-
T Consensus 161 ~rk-----~~pl~iss~~~pllG~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi~~g 215 (506)
T PRK09950 161 VRK-----NKGLSLSGIIAAITGVKPQGPWGRLVDLMFLIATVGALTISLVVTAATFTRG 215 (506)
T ss_pred hhc-----CCCCchHHhhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 222 35567888888888764 4567777776666655555444444444333
No 109
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=57.46 E-value=13 Score=23.42 Aligned_cols=32 Identities=31% Similarity=0.459 Sum_probs=24.1
Q ss_pred chhhHHHHHHHHHHHHHHHHhHhhhhcCCccc
Q 043105 258 FGGILGLSVTFIALMYVGFGVLGYFAFGSETK 289 (426)
Q Consensus 258 ~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~ 289 (426)
+..+...++.+.+++..+.|...|.+||+...
T Consensus 4 me~A~~~~i~i~~lL~~~TgyaiYtaFGppSk 35 (46)
T PRK13183 4 MSPALSLAITILAILLALTGFGIYTAFGPPSK 35 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhheeeeccCCccc
Confidence 34566777778888888888888899997643
No 110
>PLN00150 potassium ion transporter family protein; Provisional
Probab=54.70 E-value=2.9e+02 Score=29.41 Aligned_cols=134 Identities=14% Similarity=0.176 Sum_probs=61.5
Q ss_pred HHHHHHHHhhhccceeeccchhhcccc-ccchhhHHHHHHHHHHHHHHHHhHhhhhcCCc-cccchhcccCCchHHHHHH
Q 043105 229 FYGIGVAVYAFEGIGMVLPLEAEMEKK-EKFGGILGLSVTFIALMYVGFGVLGYFAFGSE-TKDIITANLGAGFVSVLVQ 306 (426)
Q Consensus 229 ~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~-~~~~i~~~~~~~~~~~~~~ 306 (426)
+.++|-++.+..|.+. +++||-|= ++--+..+..+..-+++-.-+|-..|+.=.++ ..+......|+. ...-.-
T Consensus 287 ~~~LG~V~L~iTGaEA---LyADlGHFg~~~Iriaw~~~V~P~LlL~Y~GQaA~ll~~p~~~~npFf~~iP~~-~~~P~~ 362 (779)
T PLN00150 287 WESLGGIVLCMTGTEA---MFADLGHFTVKSMQIAFTSLVYPCLLLTYLGQAAYLVKHMEDVNDPFYRSLPKP-IYWPIF 362 (779)
T ss_pred EEEecceeeeecchhh---hhccccCCCccceeeeehhhHHHHHHHHHcchHHHHhcCcccccCcHHHhCCch-hHHHHH
Confidence 3456667777777765 45777772 32223334444444444444566666553322 223333444543 222221
Q ss_pred HHHHHHHHhhhccchhhHHHHHHHhhc----C-------Cc-c-----hhHHHHHHHHHHHHHHhhcCCccchhhhh
Q 043105 307 LGLCINLFFTFPLMMHPVYEIVERRFK----G-------GE-Y-----CLWLRWLLVFLVSLVAMSVPNFADFLSLV 366 (426)
Q Consensus 307 ~~~~~~~~~s~pl~~~~~~~~~~~~~~----~-------~~-~-----~~~~~~~~~~~~~~~a~~~~~~~~i~~~~ 366 (426)
+...+.-+.+-.-.+........+... . .+ . -...++++.+.+..+.+.+.+-..+-+-=
T Consensus 363 vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AY 439 (779)
T PLN00150 363 VLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEINWILMVLCLVITAGFRDTDEIGNAY 439 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheEEecChHHHHHHh
Confidence 222222222222233333333333322 1 01 0 11267777777777777776655554433
No 111
>CHL00020 psbN photosystem II protein N
Probab=53.95 E-value=12 Score=23.24 Aligned_cols=30 Identities=23% Similarity=0.214 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHHHhHhhhhcCCccc
Q 043105 260 GILGLSVTFIALMYVGFGVLGYFAFGSETK 289 (426)
Q Consensus 260 ~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~ 289 (426)
.+...++.+..++..+.|...|.+||+...
T Consensus 3 ~A~~~~i~i~~ll~~~Tgy~iYtaFGppSk 32 (43)
T CHL00020 3 TATLVAIFISGLLVSFTGYALYTAFGQPSK 32 (43)
T ss_pred chhhHHHHHHHHHHHhhheeeeeccCCchh
Confidence 355667777778888888888889997543
No 112
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=53.76 E-value=15 Score=22.86 Aligned_cols=29 Identities=28% Similarity=0.281 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhhcCCccc
Q 043105 261 ILGLSVTFIALMYVGFGVLGYFAFGSETK 289 (426)
Q Consensus 261 ~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~ 289 (426)
+...++.+.+++-.+.|...|.+||+...
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppSk 32 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPSK 32 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCcc
Confidence 44566777777888888888999996543
No 113
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=52.01 E-value=1.5e+02 Score=26.85 Aligned_cols=40 Identities=8% Similarity=0.226 Sum_probs=31.2
Q ss_pred CCchHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcCCc
Q 043105 297 GAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGGE 336 (426)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~ 336 (426)
+.|.+..-.+....+++..+.|..++-.-..+...+.+++
T Consensus 74 ~~E~f~~~ikls~~~g~~~a~P~i~yqiw~Fi~PgLy~~E 113 (249)
T CHL00182 74 PGEYFFSSIKISFYTGLLISSPFIIYQIILFILPGLTKKE 113 (249)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHH
Confidence 3467888889999999999999998877767766665443
No 114
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=51.91 E-value=67 Score=32.62 Aligned_cols=27 Identities=19% Similarity=0.003 Sum_probs=16.5
Q ss_pred hhhhHhHHHHHHHHHHhccccchHHHH
Q 043105 371 CCGLGFVLPALFHLLVFKEEMGWKGWF 397 (426)
Q Consensus 371 ~~~~~~ilP~l~~l~~~~~~~~~~~~~ 397 (426)
...+..++|+++.++.+-++.++++++
T Consensus 126 ~~~~l~~lp~~~~~~~~~~~~~~~~~~ 152 (522)
T PRK09598 126 YIVVLGVLPGYIIYKIPLKNSSKKAPF 152 (522)
T ss_pred HHHHHHHHHHHHHHHhccccccHHHHH
Confidence 334556889999777764433444444
No 115
>PLN02351 cytochromes b561 family protein
Probab=49.64 E-value=1.9e+02 Score=25.85 Aligned_cols=73 Identities=18% Similarity=0.122 Sum_probs=49.4
Q ss_pred hhhccccccchhhHHHHHHHHHHHHHHHHhHhhhhcCCccccchhcccCC--chHHHHHHHHHHHHHHhhhccchhhHH
Q 043105 249 EAEMEKKEKFGGILGLSVTFIALMYVGFGVLGYFAFGSETKDIITANLGA--GFVSVLVQLGLCINLFFTFPLMMHPVY 325 (426)
Q Consensus 249 ~~~m~~p~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~s~pl~~~~~~ 325 (426)
++..+.+||.+|.+....-...++..++|+.. .|-++ +....|+-+ .|+......++.++-+..+....+|..
T Consensus 73 YR~~~~~~k~~K~lH~~Lh~~Ali~~vvGl~a--~fh~~--~~~i~nlySLHSWlGl~tv~Lf~lQwv~Gf~~F~~P~~ 147 (242)
T PLN02351 73 HRWLPGSRKTKKSVHLWLQGLALASGVFGIWT--KFHGQ--DGIVANFYSLHSWMGLICVSLFGAQWLTGFMSFWHRGE 147 (242)
T ss_pred hhcccccchHHHHHHHHHHHHHHHHHHHHHHH--HHhcc--cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44556666678888888888888888887777 34322 223344433 578778888888888887777666654
No 116
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=46.06 E-value=96 Score=24.23 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=10.5
Q ss_pred ChHHHHHHHHHHhhhhhhchhh
Q 043105 39 SQTKTFANVFIAIVGAGVLGLP 60 (426)
Q Consensus 39 s~~~~~~~l~~s~iG~Gil~lP 60 (426)
.+...+..+.=.++|+..+.+.
T Consensus 40 pwK~I~la~~Lli~G~~li~~g 61 (115)
T PF05915_consen 40 PWKSIALAVFLLIFGTVLIIIG 61 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555444
No 117
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=45.96 E-value=61 Score=27.89 Aligned_cols=61 Identities=20% Similarity=0.221 Sum_probs=46.6
Q ss_pred hhhhchhhhhhhHhHHHHHHHHHHhccc----------cchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHc
Q 043105 363 LSLVGSSVCCGLGFVLPALFHLLVFKEE----------MGWKGWFLDVGIVVVGVVFGVSGTWYALMEILS 423 (426)
Q Consensus 363 ~~~~G~~~~~~~~~ilP~l~~l~~~~~~----------~~~~~~~~~~~~~~~g~~~~v~~~~~~i~~ii~ 423 (426)
.-+.|++.+.-+..++|+.+.+...++. -++.+.....+..++|++.++++..-|...+.+
T Consensus 47 vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 47 VWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred heecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4456888888999999999999998762 244556777777888888888887777766654
No 118
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=44.97 E-value=1.5e+02 Score=27.94 Aligned_cols=106 Identities=14% Similarity=0.220 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHhHhhhh---cCCccccchhcccCCchHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcCCcch
Q 043105 262 LGLSVTFIALMYVGFGVLGYFA---FGSETKDIITANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGGEYC 338 (426)
Q Consensus 262 ~~~~~~~~~~~Y~~~g~~gy~~---fg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~~~ 338 (426)
-..+++++++++...|...+.. |......++++.+.......+......+.++.+........-..+++.++- +
T Consensus 38 s~~gIivs~vlf~~~g~vim~ig~~f~a~~y~~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~l---P 114 (349)
T COG3949 38 SILGIILSTVLFTLSGAVIMTIGKKFNATSYREILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGL---P 114 (349)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhCc---c
Confidence 4567777888887776665543 333344555555544555555566666666666555556666688888775 4
Q ss_pred hHHHHHHHHHHHHHHhhcCCccchhhhhchhh
Q 043105 339 LWLRWLLVFLVSLVAMSVPNFADFLSLVGSSV 370 (426)
Q Consensus 339 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~G~~~ 370 (426)
+|...++......+..+..+++.+....|.+.
T Consensus 115 ~wiGali~i~~v~i~lfl~~vegi~tvn~iI~ 146 (349)
T COG3949 115 YWIGALIIILLVLILLFLGRVEGIITVNGIIT 146 (349)
T ss_pred HHHHHHHHHHHHHHHHHHhcccceeeeheeHH
Confidence 56665666666666677777888877766544
No 119
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=42.70 E-value=25 Score=30.96 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Q 043105 395 GWFLDVGIVVVGVVFGVSGTWYALM 419 (426)
Q Consensus 395 ~~~~~~~~~~~g~~~~v~~~~~~i~ 419 (426)
++|+.|+++++|+++..-+++.=++
T Consensus 222 q~wLwwi~~vlG~ll~lr~~i~Yik 246 (262)
T KOG4812|consen 222 QYWLWWIFLVLGLLLFLRGFINYIK 246 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4789999999999999888876443
No 120
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=42.32 E-value=1.9e+02 Score=26.32 Aligned_cols=39 Identities=15% Similarity=0.311 Sum_probs=30.7
Q ss_pred CchHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcCCc
Q 043105 298 AGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGGE 336 (426)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~ 336 (426)
.|.+..-.++...+++..+.|..++-.-..+...+.+++
T Consensus 65 ~e~f~~~lk~sl~~g~~la~P~ilyqiw~Fi~PgLy~~E 103 (258)
T PRK10921 65 ASPFFTPIKLTFMVSLILSAPVILYQVWAFIAPALYKHE 103 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Confidence 367788888999999999999999877777766665433
No 121
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=41.31 E-value=2.6e+02 Score=24.95 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=57.1
Q ss_pred cchhhccc-cccchhhHHHHHHHHHHHHHHHHhHhhhhcCCccccchhcccCC--chHHHHHHHHHHHHHHhhhccchhh
Q 043105 247 PLEAEMEK-KEKFGGILGLSVTFIALMYVGFGVLGYFAFGSETKDIITANLGA--GFVSVLVQLGLCINLFFTFPLMMHP 323 (426)
Q Consensus 247 ~i~~~m~~-p~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~s~pl~~~~ 323 (426)
-+|+-.++ .|+.+|.+....=.+.+...++|+.....+-++.. ..|+-+ .|+....-.++.+.-...|-.+.+|
T Consensus 75 L~YR~~r~~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~---i~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~p 151 (245)
T KOG1619|consen 75 LIYRVFRYTSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVG---IANFYSLHSWLGLCVVILYSLQWVFGFFTFLFP 151 (245)
T ss_pred eeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---ccceeeHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34555444 57789999999888888888888888887766655 345543 5888888888888888888777776
Q ss_pred HH
Q 043105 324 VY 325 (426)
Q Consensus 324 ~~ 325 (426)
..
T Consensus 152 g~ 153 (245)
T KOG1619|consen 152 GS 153 (245)
T ss_pred CC
Confidence 54
No 122
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=41.22 E-value=3.9e+02 Score=26.91 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=33.9
Q ss_pred CCCCCCCChHHHHHHHHHHhhhhhhchhhHHHh-ccchhHHHHHHHHHHHHHHHH
Q 043105 32 GKPAPLSSQTKTFANVFIAIVGAGVLGLPYAFK-RTGWLMGSLMIISVSALTFHC 85 (426)
Q Consensus 32 ~~~~~~~s~~~~~~~l~~s~iG~Gil~lP~~~~-~~G~~~g~i~l~~~~~~~~~t 85 (426)
.+.++..+.+..+...++..+| .++++|..+. +..|......-.+.+.+....
T Consensus 147 ~~~RG~~g~~~~~~~~~g~ll~-~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~ 200 (485)
T KOG0569|consen 147 KNLRGALGTLLQIGVVIGILLG-QVLGLPSLLGTEDLWPYLLAFPLIPALLQLAL 200 (485)
T ss_pred hhhccHHHHHHHHHHHHHHHHH-HHHccHHhcCCCcchHHHHHHHHHHHHHHHHH
Confidence 3456777778888777777776 5789999984 555655444444444444333
No 123
>PF00902 TatC: Sec-independent protein translocase protein (TatC); InterPro: IPR002033 Proteins encoded by the mttABC operon (formerly yigTUW), mediate a novel Sec-independent membrane targeting and translocation system in Escherichia coli that interacts with cofactor-containing redox proteins having a S/TRRXFLK "twin arginine" leader motif. This family contains the E. coli mttB gene (TATC) []. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N and C termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N terminus and the first cytoplasmic loop region of the E. coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon [, ].
Probab=40.58 E-value=2.5e+02 Score=24.56 Aligned_cols=40 Identities=10% Similarity=0.299 Sum_probs=31.8
Q ss_pred CCchHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcCCc
Q 043105 297 GAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGGE 336 (426)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~ 336 (426)
+.|......+....+++..+.|..++-.-..+...+.+++
T Consensus 57 ~~e~f~~~lk~s~~~~~~~~~P~~~yq~w~Fi~PgL~~~E 96 (215)
T PF00902_consen 57 PTEAFFTYLKLSFFLGLIISLPYILYQIWAFIAPGLYKHE 96 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHH
Confidence 3467888889999999999999999877777776665443
No 124
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=39.83 E-value=3.9e+02 Score=26.57 Aligned_cols=48 Identities=8% Similarity=-0.070 Sum_probs=36.7
Q ss_pred ccchhhhHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhh
Q 043105 106 INSFGDLGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFR 153 (426)
Q Consensus 106 ~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 153 (426)
.....|.+++.+-|+.++...++-=+...++-+...+..+-.++-++.
T Consensus 88 G~hLAe~Cr~~Ypk~~~~~Lwi~aEiAiI~sDiqEVIGTAiAlniL~~ 135 (503)
T KOG1291|consen 88 GKHLAEICREEYPKWPRMVLWIMAEIAIIASDIQEVIGTAIALNILSN 135 (503)
T ss_pred cHHHHHHHHHHccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhC
Confidence 347888899999999998888877777777777777666666666655
No 125
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=39.00 E-value=4.3e+02 Score=26.80 Aligned_cols=163 Identities=15% Similarity=-0.039 Sum_probs=74.4
Q ss_pred CCCCChHHHHHHHHHHhhhhhhchhh----HHHh-c--cchh--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 043105 35 APLSSQTKTFANVFIAIVGAGVLGLP----YAFK-R--TGWL--------MGSLMIISVSALTFHCMMLLVHTRRKLESS 99 (426)
Q Consensus 35 ~~~~s~~~~~~~l~~s~iG~Gil~lP----~~~~-~--~G~~--------~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~ 99 (426)
+..-+.++-++.++++-+|.|++..+ .... + -|.- .+....+.-+.+..++.+.+.-....+-.-
T Consensus 85 ~PEfs~~SW~aMLFaAGmGigl~fwgvaEp~~~y~~pp~~~~~~t~~A~~~Al~~tffHWG~~~WaiY~lvalalaYf~~ 164 (537)
T COG1292 85 KPEFSTLSWLAMLFAAGMGIGLLFWGVAEPVYYYATPPPGAEPNTTEAAEQALAYTFFHWGLHAWAIYALVALALAYFHY 164 (537)
T ss_pred CCCcchhHHHHHHHHcccCceeeEeechhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHHhheeeE
Confidence 44577788889999999999988643 2211 1 1111 234444444444444444444322222110
Q ss_pred ccCCccccchhhhHHHHhccc----chhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHH-HHHHH
Q 043105 100 EHGFTKINSFGDLGFVVCGSI----GRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWS-CLPFQ 174 (426)
Q Consensus 100 ~~~~~~~~~y~~l~~~~~G~~----~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i-~~~~~ 174 (426)
+++.....+...+-.+|++ .+..+|++-++...+....-+-.....+..-+........+......++ +..+.
T Consensus 165 --rk~~pl~lss~l~Pllg~~~~G~~G~~IDi~aiiaTl~GiATsLG~ga~qi~~Gl~~l~gip~~~~~q~~iI~vi~~~ 242 (537)
T COG1292 165 --RKGLPLLLSSALYPLLGERIKGPIGHAVDILAIIATLFGIATSLGLGALQLTAGLSYLFGIPNSFAVQAIIIAVITAL 242 (537)
T ss_pred --ecCCCchhhhhhhhhhcccccCccchhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 0112222333344444443 3456777766665555554444444444433332221111222222222 22222
Q ss_pred HHhh----hhhhhhhhhHHHHHHHHHHHH
Q 043105 175 LGLN----SIATLTHLAPLSIFADVVDLA 199 (426)
Q Consensus 175 ~pl~----~~~~l~~l~~~s~~~~~~~~~ 199 (426)
.-.+ .-|+++.++.+.........+
T Consensus 243 ~~~S~~sGv~KGIr~LS~~n~~la~~lll 271 (537)
T COG1292 243 FTISVWSGLDKGIRVLSNINMVLAFLLLL 271 (537)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 336667777666654444433
No 126
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=38.12 E-value=77 Score=20.73 Aligned_cols=29 Identities=14% Similarity=0.289 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhhcCCccc
Q 043105 261 ILGLSVTFIALMYVGFGVLGYFAFGSETK 289 (426)
Q Consensus 261 ~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~ 289 (426)
-+.+=.++..++|+++|+.-+..+.++..
T Consensus 24 fViik~vismimylilGi~L~yis~~~~~ 52 (54)
T PF04835_consen 24 FVIIKSVISMIMYLILGIALIYISSNDDK 52 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCccc
Confidence 34556778899999999998877766554
No 127
>TIGR01912 TatC-Arch Twin arginine targeting (Tat) protein translocase TatC, Archaeal clade. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR00945) represents the bacterial clade of this family. TatC is often found (in bacteria) in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=35.56 E-value=2.2e+02 Score=25.48 Aligned_cols=40 Identities=15% Similarity=0.310 Sum_probs=31.4
Q ss_pred CCchHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcCCc
Q 043105 297 GAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGGE 336 (426)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~ 336 (426)
+.|....-.+.....++..++|..++-.-..+.....+++
T Consensus 61 ~~e~f~~~lk~s~~~g~~~~~P~i~yqiw~Fi~PgLy~~E 100 (237)
T TIGR01912 61 PFAALELRIKSAFFIGLLLASPVLAYEAYRFIKPALKPHE 100 (237)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 3477888889999999999999998877777766665443
No 128
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=35.53 E-value=2.2e+02 Score=23.38 Aligned_cols=23 Identities=39% Similarity=0.352 Sum_probs=13.0
Q ss_pred hhHhHHHHHHHHHHhccccchHH
Q 043105 373 GLGFVLPALFHLLVFKEEMGWKG 395 (426)
Q Consensus 373 ~~~~ilP~l~~l~~~~~~~~~~~ 395 (426)
.+.-++|+++.++.+-++.++.+
T Consensus 73 l~~~vlP~~~l~~~~i~~~~~~~ 95 (156)
T PF08019_consen 73 LLLGVLPALLLWRVRIKKRSWKR 95 (156)
T ss_pred HHHHHHHHHHHHHHHhhcccHHH
Confidence 34445688887776654434333
No 129
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=34.76 E-value=5.1e+02 Score=26.38 Aligned_cols=48 Identities=21% Similarity=0.136 Sum_probs=39.4
Q ss_pred ccchhhhHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhh
Q 043105 106 INSFGDLGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFR 153 (426)
Q Consensus 106 ~~~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 153 (426)
.....++-....||++........++..+..+++-+...++....+-.
T Consensus 324 g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaR 371 (550)
T KOG1289|consen 324 GQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFAR 371 (550)
T ss_pred CChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhc
Confidence 446666677899999998888888999999999888888888877743
No 130
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=31.76 E-value=5.7e+02 Score=26.07 Aligned_cols=133 Identities=14% Similarity=0.127 Sum_probs=62.7
Q ss_pred hHHHHHHHHHhhhccceeeccchhhcccc-ccchhhHHHHHHHHHHHHHHHHhHhhhhcCCccccch-hcccCCchHHHH
Q 043105 227 VFFYGIGVAVYAFEGIGMVLPLEAEMEKK-EKFGGILGLSVTFIALMYVGFGVLGYFAFGSETKDII-TANLGAGFVSVL 304 (426)
Q Consensus 227 ~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~i-~~~~~~~~~~~~ 304 (426)
.-+..+|..+.+..|.+.+ ++||-|= +|--|..+.....-+++---.|-..|+.=.++..+|. ....| ++...-
T Consensus 202 ~~~~~LG~V~L~~TGaEAL---yADmGHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~~p~~~~npFf~~~P-~~~~~p 277 (534)
T PF02705_consen 202 IGFFVLGAVFLCVTGAEAL---YADMGHFGRKPIRIAWFFLVFPALLLNYFGQGALLLSHPEAVSNPFFLLIP-EWLLWP 277 (534)
T ss_pred chhhhcchHHHHHhhHHHH---HhhhccccchhhhhhHHHHHHHHHHHHHccHHHHHHcCcchhhhHHHHHhH-HHHHHH
Confidence 3456677888888888764 5688773 3322333444333333333345555544333333333 23334 343333
Q ss_pred HHHHHHHHHHhhhccchhhHHHHHHHhhcC----C--------cc-----hhHHHHHHHHHHHHHHhhcCCccchh
Q 043105 305 VQLGLCINLFFTFPLMMHPVYEIVERRFKG----G--------EY-----CLWLRWLLVFLVSLVAMSVPNFADFL 363 (426)
Q Consensus 305 ~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~----~--------~~-----~~~~~~~~~~~~~~~a~~~~~~~~i~ 363 (426)
.-++..+..+.+-.-....+.....+..+- + +. -...++.+.+.+..+-..+.+-+.+-
T Consensus 278 ~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~la 353 (534)
T PF02705_consen 278 MVILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSNLA 353 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEECChHHHH
Confidence 323333333333333333444444443321 0 11 01267777777777666666544443
No 131
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=31.45 E-value=6.2e+02 Score=26.34 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043105 69 LMGSLMIISVSALTFHCMMLLVHTRR 94 (426)
Q Consensus 69 ~~g~i~l~~~~~~~~~t~~~l~~~~~ 94 (426)
+.|.+.+++..+.-.-+.+...-..+
T Consensus 49 vlGvlSLIfWtL~livtiKYv~ivlr 74 (622)
T PRK10745 49 VFGFLSLIFWLLILVVSIKYLTFVMR 74 (622)
T ss_pred eehhhHHHHHHHHHHHHHHhheEEEe
Confidence 45777777766666666666554443
No 132
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=30.06 E-value=5.6e+02 Score=25.42 Aligned_cols=129 Identities=19% Similarity=0.175 Sum_probs=65.1
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHhHhhhhcCCccccchhcccCC-chHHHHHHHHHHHHHHhhhccchhhHHHHHHH
Q 043105 252 MEKKEKFGGILGLSVTFIALMYVGFGVLGYFAFGSETKDIITANLGA-GFVSVLVQLGLCINLFFTFPLMMHPVYEIVER 330 (426)
Q Consensus 252 m~~p~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~ 330 (426)
-||+++.+++...+..+..++-+.+++..+.. .++++.-+.. +.....+.--.-+......+..++-..+...+
T Consensus 86 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr 160 (455)
T COG0534 86 AGDRKKAKRVLGQGLLLALLLGLLLAILLLFF-----AEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILR 160 (455)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888777776666642 1222222321 11222222222222223323333333344444
Q ss_pred hhcCCcchhHHHHHHHHHHHHHH-hhcCC-ccchhhhhchhhhhhhHhHHHHHHHHHH
Q 043105 331 RFKGGEYCLWLRWLLVFLVSLVA-MSVPN-FADFLSLVGSSVCCGLGFVLPALFHLLV 386 (426)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~a-~~~~~-~~~i~~~~G~~~~~~~~~ilP~l~~l~~ 386 (426)
...+.+.+.....+....-.++- +++-. ++. ++..|+-..+.+...+.+++.+..
T Consensus 161 ~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~-lGv~GAA~AT~ia~~~~~~~~~~~ 217 (455)
T COG0534 161 GLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGG-LGVAGAALATVIARWIGALLLLIY 217 (455)
T ss_pred hcCCCchhHHHHHHHHHHHHHhhHHHHHhcccc-ccchhHHHHHHHHHHHHHHHHHHH
Confidence 44444443333333333332222 11111 333 889998888888888888765554
No 133
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=28.70 E-value=4.8e+02 Score=24.25 Aligned_cols=13 Identities=23% Similarity=0.754 Sum_probs=6.0
Q ss_pred HHHHHHHHHhHhh
Q 043105 269 IALMYVGFGVLGY 281 (426)
Q Consensus 269 ~~~~Y~~~g~~gy 281 (426)
.......++++|.
T Consensus 223 ~~~~~~~i~vfG~ 235 (320)
T PF03845_consen 223 LFIIFITIGVFGP 235 (320)
T ss_pred HHHHHHHHHhcCH
Confidence 3344444555554
No 134
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=28.45 E-value=3.1e+02 Score=28.10 Aligned_cols=13 Identities=38% Similarity=0.306 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHhc
Q 043105 376 FVLPALFHLLVFK 388 (426)
Q Consensus 376 ~ilP~l~~l~~~~ 388 (426)
-++|+++.++.+-
T Consensus 131 gvlP~~~~~~~~i 143 (545)
T PRK11598 131 GVLPALIACWIKI 143 (545)
T ss_pred HHHHHHHHHhhhh
Confidence 4689888777664
No 135
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=27.55 E-value=6.8e+02 Score=25.64 Aligned_cols=44 Identities=11% Similarity=-0.059 Sum_probs=24.0
Q ss_pred chhhhHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHH
Q 043105 108 SFGDLGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYF 151 (426)
Q Consensus 108 ~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~ 151 (426)
.+.+..+...+++++.++.+.......+...+.....++.+..+
T Consensus 300 p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~am 343 (557)
T TIGR00906 300 PFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAM 343 (557)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33443343333455566666666666666666666666655554
No 136
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=27.36 E-value=3.1e+02 Score=21.63 Aligned_cols=48 Identities=23% Similarity=0.206 Sum_probs=26.3
Q ss_pred CCCChHHHHHHHHHHhhhhhhchhhHHHhccchh-HHHHHHHHHHHHHHH
Q 043105 36 PLSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWL-MGSLMIISVSALTFH 84 (426)
Q Consensus 36 ~~~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G~~-~g~i~l~~~~~~~~~ 84 (426)
+..|.-........+.+-.-++++|.++. .||+ .+...+++..+++.+
T Consensus 19 rGlT~~El~~~a~~~~~~g~~~gl~la~~-~g~~a~~pt~~ll~~~~~v~ 67 (121)
T PF11990_consen 19 RGLTADELGLAAGVGFVAGLVVGLPLALL-TGWWAMIPTGALLGPILGVF 67 (121)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 45555555544444444346778998887 6665 444444444444433
No 137
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.33 E-value=6.6e+02 Score=25.01 Aligned_cols=13 Identities=31% Similarity=0.506 Sum_probs=8.9
Q ss_pred HHHHHhhhhhhch
Q 043105 46 NVFIAIVGAGVLG 58 (426)
Q Consensus 46 ~l~~s~iG~Gil~ 58 (426)
.+.++.+|+|.--
T Consensus 293 ~Lfsa~lGsG~Ql 305 (593)
T KOG1277|consen 293 LLFSAVLGSGAQL 305 (593)
T ss_pred HHHHHHhccccch
Confidence 4667788888543
No 138
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=26.15 E-value=7.4e+02 Score=25.59 Aligned_cols=57 Identities=25% Similarity=0.282 Sum_probs=36.0
Q ss_pred CChHHHHHHHHHHhhhhhhc-hhhHH-Hhccch---hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043105 38 SSQTKTFANVFIAIVGAGVL-GLPYA-FKRTGW---LMGSLMIISVSALTFHCMMLLVHTRR 94 (426)
Q Consensus 38 ~s~~~~~~~l~~s~iG~Gil-~lP~~-~~~~G~---~~g~i~l~~~~~~~~~t~~~l~~~~~ 94 (426)
.+-.+.....++..++.|=. -.||- +++.|+ ++-.+.+++.|+-..|--..+.+-++
T Consensus 82 ~~K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~r 143 (629)
T KOG3659|consen 82 GSKTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYHR 143 (629)
T ss_pred hhHHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 34466677778888887744 56875 555554 34566677777776665555555433
No 139
>TIGR00909 2A0306 amino acid transporter.
Probab=23.96 E-value=6.7e+02 Score=24.33 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=37.1
Q ss_pred chhhhHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHh
Q 043105 108 SFGDLGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFF 152 (426)
Q Consensus 108 ~y~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~ 152 (426)
...+..++..|+++..+..+...+..++...+.....++.+...-
T Consensus 265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a 309 (429)
T TIGR00909 265 PLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMS 309 (429)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888888899999999999999888888888877664
No 140
>PRK11403 hypothetical protein; Provisional
Probab=23.83 E-value=2.8e+02 Score=21.44 Aligned_cols=69 Identities=16% Similarity=-0.077 Sum_probs=47.0
Q ss_pred HHHHHHhhcCCccchhhhhchhhhhhhHhHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHHHHhHHHHH
Q 043105 348 LVSLVAMSVPNFADFLSLVGSSVCCGLGFVLPALFHLLVFKEEM-GWKGWFLDVGIVVVGVVFGVSGTWYAL 418 (426)
Q Consensus 348 ~~~~~a~~~~~~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~~~~-~~~~~~~~~~~~~~g~~~~v~~~~~~i 418 (426)
..+++.+. +-.-.+|=-|-.++..+.-.+|++-+.|..|++. ...-.-.+|...+.++.....|.|++=
T Consensus 17 ~~YliGLW--nA~m~LneKGYyf~vL~~GlF~~vs~qk~vrd~~~~~~y~~~cw~~~llsi~LL~vGl~NA~ 86 (113)
T PRK11403 17 LVYLVGLW--ISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLDDFFIHICQLVALITIGLLFIGVLNAP 86 (113)
T ss_pred HHHHHHhc--ccccccCccchhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33444433 3344455567777788888899999999887543 333345778888888888888888753
No 141
>PLN00148 potassium transporter; Provisional
Probab=23.81 E-value=9.3e+02 Score=25.90 Aligned_cols=133 Identities=11% Similarity=0.111 Sum_probs=61.4
Q ss_pred HHHHHHHHhhhccceeeccchhhcccc-ccchhhHHHHHHHHHHHHHHHHhHhhhhcCC-ccccchhcccCCchHHHHHH
Q 043105 229 FYGIGVAVYAFEGIGMVLPLEAEMEKK-EKFGGILGLSVTFIALMYVGFGVLGYFAFGS-ETKDIITANLGAGFVSVLVQ 306 (426)
Q Consensus 229 ~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~-~~~~~i~~~~~~~~~~~~~~ 306 (426)
+.++|-++.+..|.+. ++++|-+= ++--+..+..+..-+++-.-+|-..|+.=.+ +..+......|+. ...-.-
T Consensus 270 ~~~LGgV~L~iTGaEA---LyADlGHFg~~~Iriaw~~~V~P~L~L~Y~GQaA~ll~~p~~~~npFf~~iP~~-~~~P~~ 345 (785)
T PLN00148 270 WISLGGILLSITGTEA---MFADLGHFTAASIRLAFATVIYPCLVVQYMGQAAFLSKNIPSIPNSFYDSIPDP-VFWPVF 345 (785)
T ss_pred EEeecchheeccchhh---hhhhccCCCccceEEeeeehHHHHHHHHHcchHHHHhcCcccccCcHHHhCCch-hHHHHH
Confidence 3456777777777765 46777772 2222333333444444444456666665322 2233344444543 222222
Q ss_pred HHHHHHHHhhhccchhhHHHHHHHhhc----C-------Ccc------hhHHHHHHHHHHHHHHhhcCCccchhhh
Q 043105 307 LGLCINLFFTFPLMMHPVYEIVERRFK----G-------GEY------CLWLRWLLVFLVSLVAMSVPNFADFLSL 365 (426)
Q Consensus 307 ~~~~~~~~~s~pl~~~~~~~~~~~~~~----~-------~~~------~~~~~~~~~~~~~~~a~~~~~~~~i~~~ 365 (426)
+...+.-+.+-.-.+........+... . .+. -...++++.+.+..+.+.+.+-..+-+-
T Consensus 346 vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~la~A 421 (785)
T PLN00148 346 VIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLAVTIGFRDTTLIGNA 421 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHHhheeeccchhHHHh
Confidence 222222222223333333333333322 1 010 1127778877777777777665555433
No 142
>PRK01766 multidrug efflux protein; Reviewed
Probab=23.74 E-value=5.3e+02 Score=25.32 Aligned_cols=25 Identities=20% Similarity=0.273 Sum_probs=13.1
Q ss_pred hhhhchhhhhhhHhHHHHHHHHHHh
Q 043105 363 LSLVGSSVCCGLGFVLPALFHLLVF 387 (426)
Q Consensus 363 ~~~~G~~~~~~~~~ilP~l~~l~~~ 387 (426)
+++.|.-.+......+.+++.+...
T Consensus 415 ~G~~G~~~~~~~~~~~~~~~~~~~~ 439 (456)
T PRK01766 415 MGPFGFWIGLIIGLTAAAILLLLRL 439 (456)
T ss_pred CCceehHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555544433
No 143
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=22.99 E-value=5.7e+02 Score=23.11 Aligned_cols=36 Identities=8% Similarity=0.020 Sum_probs=23.8
Q ss_pred hhccccccchhhHHHHHHHHHHHHHHHHhHhhhhcCC
Q 043105 250 AEMEKKEKFGGILGLSVTFIALMYVGFGVLGYFAFGS 286 (426)
Q Consensus 250 ~~m~~p~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~ 286 (426)
+.+++| ++++......++..++|...-..++-.+++
T Consensus 19 ~~l~~P-~lr~~~liPl~inllLf~~~l~~~~~~~~~ 54 (251)
T PRK04949 19 KLILQP-GLRRFVILPLLVNILLFGGAFWWLFTQLDA 54 (251)
T ss_pred HHhcCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 477888888888888888775555555553
No 144
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=22.57 E-value=5.8e+02 Score=25.65 Aligned_cols=157 Identities=11% Similarity=-0.051 Sum_probs=83.2
Q ss_pred cccchhHHHHHHHHHhhhhHHHHH-HHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhh-hHHHHHHHH
Q 043105 118 GSIGRGIVDVLIILSQAGFCISYL-MFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHL-APLSIFADV 195 (426)
Q Consensus 118 G~~~~~i~~~~~~~~~~g~~~~y~-i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l-~~~s~~~~~ 195 (426)
+|.+.+++.+.+.+.+.+..++-. +..|.-+..++|.+-+. .....+..+....+.|.-++++=+++ ..++..+.+
T Consensus 340 ~RAgvFfi~~~f~laql~~NISan~vaagnDl~~L~PkyinI--rRG~~~~a~ia~a~~PWnll~SSs~F~t~Lssysvf 417 (572)
T KOG2466|consen 340 ARAGVFFIGFGFALAQLGTNISANSVAAGNDLSALLPKYINI--RRGALICAIIAWAICPWNLLSSSSKFLTALSSYSVF 417 (572)
T ss_pred cchhhhHHHHHHHHHHHhcchhccccccchhhHhhCcceEEe--cccHHHHHHHHHHhCchHHhccccHHHHHHHHHHHH
Confidence 345777888888888888877654 34455567777765321 11122333446666777776654443 334444433
Q ss_pred HHHHHhhhhhhhhhh-h----hc---cCCccccccCChhhHHHHHHHHHhhhccceeeccchhhccccccc--------h
Q 043105 196 VDLAATAVVMVDEVV-I----SL---KQMPEVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKEKF--------G 259 (426)
Q Consensus 196 ~~~~~~~~~i~~~~~-~----~~---~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~--------~ 259 (426)
..-+.-+++.-+... + +. ...+....... .-.+-=.+..|-.++.+++|-+..|..+..++ .
T Consensus 418 LspiagViiaDyF~iRk~~~~i~~~y~~~~g~yY~~~--~G~NwRA~vA~vcG~~P~lpG~a~~V~~~~~v~~G~~~~yy 495 (572)
T KOG2466|consen 418 LSPIAGVIIADYFLIRKGYYKITHLYSLSKGSYYYFK--KGINWRAFVAYVCGMAPNLPGFAGSVGADIKVPDGAVKLYY 495 (572)
T ss_pred HhhccceEeehhheeecceeeeeeeeecCCCceeeee--cCccHHHHHHHHhccccCCcchhhhcCcccccccceEEEEe
Confidence 332222222211111 0 01 11111111110 00111134567778899999999988753222 2
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 043105 260 GILGLSVTFIALMYVGFGV 278 (426)
Q Consensus 260 ~~~~~~~~~~~~~Y~~~g~ 278 (426)
-....++.++++.|..++.
T Consensus 496 ~~yf~sf~isf~vYwiLc~ 514 (572)
T KOG2466|consen 496 LDYFFSFLISFLVYWILCL 514 (572)
T ss_pred chHHHHHHHHHHHHHHHHh
Confidence 3567889999999986643
No 145
>PLN00149 potassium transporter; Provisional
Probab=22.46 E-value=9.9e+02 Score=25.71 Aligned_cols=135 Identities=10% Similarity=0.100 Sum_probs=64.5
Q ss_pred HHHHHHHHHhhhccceeeccchhhccc-cccchhhHHHHHHHHHHHHHHHHhHhhhhcCCccccc----hhcccCCchHH
Q 043105 228 FFYGIGVAVYAFEGIGMVLPLEAEMEK-KEKFGGILGLSVTFIALMYVGFGVLGYFAFGSETKDI----ITANLGAGFVS 302 (426)
Q Consensus 228 ~~~~~~~~~faf~~~~~i~~i~~~m~~-p~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~----i~~~~~~~~~~ 302 (426)
-+.++|-++.+..|.+. ++++|-+ .++--+..+..+..-+++-.-+|-..|+.-.++..++ .....|+. ..
T Consensus 270 g~~~LGgV~L~iTG~EA---LyADlGHF~~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~p~~~~~~~~pFy~~iP~~-~~ 345 (779)
T PLN00149 270 GWMSLGGILLCITGSEA---MFADLGHFSQLSIKIAFTSLVYPSLILAYMGQAAYLSKHHVIESDYRIGFYVSVPEK-LR 345 (779)
T ss_pred eeEeecchhhcccchhh---hhhcccCCCccceeeeehhhHHHHHHHHhhhHHHHHhcCcchhccccCcHHHhCCch-hH
Confidence 34466777788888765 4677777 2332233444444445554555666666533332222 33444543 22
Q ss_pred HHHHHHHHHHHHhhhccchhhHHHHHHHhhc----C-------Cc-c-----hhHHHHHHHHHHHHHHhhcCCccchhhh
Q 043105 303 VLVQLGLCINLFFTFPLMMHPVYEIVERRFK----G-------GE-Y-----CLWLRWLLVFLVSLVAMSVPNFADFLSL 365 (426)
Q Consensus 303 ~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~----~-------~~-~-----~~~~~~~~~~~~~~~a~~~~~~~~i~~~ 365 (426)
.-.-+...+.-+.+-.-.+........+... . .+ . -...++++.+.+..+.+.+.+-..+-+-
T Consensus 346 ~P~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~A 425 (779)
T PLN00149 346 WPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPEINWTLMLLCLAVTVGFRDTKRLGNA 425 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheeEecChHHHHHH
Confidence 2222222222222223233333333333322 1 01 0 1127778887777777777665555443
Q ss_pred h
Q 043105 366 V 366 (426)
Q Consensus 366 ~ 366 (426)
=
T Consensus 426 Y 426 (779)
T PLN00149 426 S 426 (779)
T ss_pred h
Confidence 3
No 146
>PF14256 YwiC: YwiC-like protein
Probab=22.27 E-value=4.1e+02 Score=21.19 Aligned_cols=50 Identities=16% Similarity=0.092 Sum_probs=29.0
Q ss_pred HHHHHHHHHhh-cCCccchhhhhchhhhhhhHhHHHHHHHHHHhccccchHHH
Q 043105 345 LVFLVSLVAMS-VPNFADFLSLVGSSVCCGLGFVLPALFHLLVFKEEMGWKGW 396 (426)
Q Consensus 345 ~~~~~~~~a~~-~~~~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~~~~~~~~~ 396 (426)
.++..++++.. -|+...+.-+++-.++ ...-.|...++|.++++++++++
T Consensus 10 Ml~~P~l~G~~~~~~w~~~~L~~aw~~~--yl~~~p~~~~~k~r~~~~~~~~~ 60 (129)
T PF14256_consen 10 MLLVPFLLGMAGGPSWAHLPLLLAWLFG--YLAFYPFLLWLKQRRRRRPRYLK 60 (129)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHH--HHHHHHHHHHHhcccccchhHHH
Confidence 34444444442 2666666656665553 45556999999997744444443
No 147
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=22.00 E-value=6.6e+02 Score=23.53 Aligned_cols=55 Identities=15% Similarity=0.153 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhhhhhchhhHHHhccch----------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043105 42 KTFANVFIAIVGAGVLGLPYAFKRTGW----------LMGSLMIISVSALTFHCMMLLVHTRRKLES 98 (426)
Q Consensus 42 ~~~~~l~~s~iG~Gil~lP~~~~~~G~----------~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~ 98 (426)
..++.++++.+ |+...|--....|+ +.+++.-+++..++.+.........++.++
T Consensus 7 ~l~~~i~g~~l--G~~~~p~ll~~~~~~~~~~~~n~~v~~ligai~~~li~~~~~~~~~~~~~~le~ 71 (356)
T COG4956 7 ILLFIIIGAVL--GFAVIPELLADLGIQDTAFLNNEYVDALIGAIIFFLISFWFGKYVLNWLKRLEE 71 (356)
T ss_pred HHHHHHHHhhh--hHhhHHHHHhhcCcccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555554 46677877777776 334555555566666666666666666644
No 148
>COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only]
Probab=21.99 E-value=6e+02 Score=22.99 Aligned_cols=53 Identities=11% Similarity=0.003 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhHHHHhcccchhHHHHHH
Q 043105 72 SLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGFVVCGSIGRGIVDVLI 129 (426)
Q Consensus 72 ~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~i~~~~~ 129 (426)
.=-+++..+.+.++.++-.....+..++ ++...|.+ .++.+|+.......++.
T Consensus 67 ~r~~l~~~LvtlWs~RL~~hl~rR~~~~----geD~RY~~-l~~~wg~t~~~~~~l~~ 119 (272)
T COG3752 67 RRRWLLLFLVTLWSLRLGWHLYRRTRGK----GEDPRYVN-LRQRWGKTIYPLKALFI 119 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCC----CCChHHHH-HHHHhccchhHHHHHHH
Confidence 3345566677777777777766665433 55566666 34567776655444333
No 149
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=21.78 E-value=3.1e+02 Score=22.35 Aligned_cols=70 Identities=19% Similarity=0.289 Sum_probs=49.0
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHhHhhhhcCCccccchhcccCC--chHHHHHHHHHHHHHHhhhccchhhH
Q 043105 252 MEKKEKFGGILGLSVTFIALMYVGFGVLGYFAFGSETKDIITANLGA--GFVSVLVQLGLCINLFFTFPLMMHPV 324 (426)
Q Consensus 252 m~~p~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~s~pl~~~~~ 324 (426)
.+.+|+.+|.+.+..-...++..++|+.....+-++.. . .|+.+ .|+.....+++.++.+..+....+|.
T Consensus 33 ~~~~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~--~-~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (144)
T cd08766 33 VPGSREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVG--I-PNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPG 104 (144)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--c-cccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45557777888999888888888888866655554432 2 23433 47777777888888887776667775
No 150
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=21.45 E-value=6.2e+02 Score=25.08 Aligned_cols=29 Identities=10% Similarity=0.061 Sum_probs=16.9
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHhHhh
Q 043105 253 EKKEKFGGILGLSVTFIALMYVGFGVLGY 281 (426)
Q Consensus 253 ~~p~~~~~~~~~~~~~~~~~Y~~~g~~gy 281 (426)
||+++.++....+...+..+-..++..-+
T Consensus 311 ~~~~~a~~~~~~~~~~~~~~~~~~~~i~~ 339 (455)
T COG0534 311 GNYKRARRAARLALKLSLLIALLIALLLL 339 (455)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666655544433
No 151
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=21.19 E-value=1.7e+02 Score=24.16 Aligned_cols=57 Identities=12% Similarity=0.007 Sum_probs=35.7
Q ss_pred hchhhhhhhHhHHHHHHHHHHh-c-cccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHc
Q 043105 366 VGSSVCCGLGFVLPALFHLLVF-K-EEMGWKGWFLDVGIVVVGVVFGVSGTWYALMEILS 423 (426)
Q Consensus 366 ~G~~~~~~~~~ilP~l~~l~~~-~-~~~~~~~~~~~~~~~~~g~~~~v~~~~~~i~~ii~ 423 (426)
.++..+....|..|.+.+-.-. . +..+..+ -...+-+++|+..++.++..+-.....
T Consensus 35 ~~g~~~~~~gF~~Pt~y~~yk~~~~~gv~~~~-~~pflSf~lG~~~m~~~~~~~~k~~y~ 93 (152)
T PF07954_consen 35 LGGYGGFMAGFFAPTAYYRYKTGAIKGVPVPR-QKPFLSFLLGLGAMMAGSQLAGKYQYN 93 (152)
T ss_pred HHHHHHHHHHHhhHHHHHHHhcccccCCcCCc-cCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788888988776411 1 1111111 445677888988888888777665544
No 152
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=20.88 E-value=9.8e+02 Score=25.07 Aligned_cols=55 Identities=18% Similarity=0.168 Sum_probs=35.8
Q ss_pred CCChHHHHHHHHHHhhhhhhc-hhhHHHhccchhH----HHHHHHHHHHHHHHHHHHHHH
Q 043105 37 LSSQTKTFANVFIAIVGAGVL-GLPYAFKRTGWLM----GSLMIISVSALTFHCMMLLVH 91 (426)
Q Consensus 37 ~~s~~~~~~~l~~s~iG~Gil-~lP~~~~~~G~~~----g~i~l~~~~~~~~~t~~~l~~ 91 (426)
-.+..+-....++-.+|-|=. =+|+...+.|... =.+.++++|.-..+--..+.+
T Consensus 37 w~~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQ 96 (629)
T KOG3660|consen 37 WKSKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQ 96 (629)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhh
Confidence 347788889999999999955 4999877777533 344444444444444444444
No 153
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=20.63 E-value=2e+02 Score=17.09 Aligned_cols=30 Identities=10% Similarity=0.061 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 043105 393 WKGWFLDVGIVVVGVVFGVSGTWYALMEIL 422 (426)
Q Consensus 393 ~~~~~~~~~~~~~g~~~~v~~~~~~i~~ii 422 (426)
+.+++......++-.+.++.|++....+-+
T Consensus 6 ~~H~W~Gl~~g~~l~~~~~tG~~~~f~~ei 35 (37)
T PF13706_consen 6 KLHRWLGLILGLLLFVIFLTGAVMVFRDEI 35 (37)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Confidence 345566666666666666667666665543
No 154
>PRK11560 phosphoethanolamine transferase; Provisional
Probab=20.29 E-value=8.6e+02 Score=25.01 Aligned_cols=20 Identities=10% Similarity=-0.159 Sum_probs=14.0
Q ss_pred hhhhhHhHHHHHHHHHHhcc
Q 043105 370 VCCGLGFVLPALFHLLVFKE 389 (426)
Q Consensus 370 ~~~~~~~ilP~l~~l~~~~~ 389 (426)
.-..+.-++|+++.++.+-+
T Consensus 125 ~~~l~~gvlP~~~i~~~~i~ 144 (558)
T PRK11560 125 LWLVAVSALPLILIWNNRCR 144 (558)
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 33445568899998888754
Done!