Query 043105
Match_columns 426
No_of_seqs 151 out of 1358
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 22:47:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043105.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043105hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.9 3.1E-19 1E-23 175.4 31.7 344 34-390 6-379 (445)
2 3gia_A Uncharacterized protein 99.8 4.6E-17 1.6E-21 159.8 30.0 343 34-390 4-369 (444)
3 4djk_A Probable glutamate/gamm 99.7 5.1E-14 1.7E-18 140.6 28.4 277 33-323 8-311 (511)
4 2jln_A MHP1; hydantoin, transp 99.2 3.9E-08 1.3E-12 97.2 29.4 288 34-334 23-332 (501)
5 3dh4_A Sodium/glucose cotransp 98.4 0.0011 3.8E-08 65.8 32.7 149 34-198 18-168 (530)
6 2xq2_A Sodium/glucose cotransp 98.1 0.0088 3E-07 60.1 31.3 148 35-198 48-197 (593)
7 2a65_A Leutaa, Na(+):neurotran 96.9 0.35 1.2E-05 47.3 32.7 224 36-267 7-284 (519)
8 2wsw_A BCCT family betaine/car 73.4 68 0.0023 31.0 16.3 26 34-59 87-112 (509)
9 4b4a_A TATC, SEC-independent p 70.9 29 0.00098 30.1 9.7 40 297-336 57-96 (249)
10 4ain_A Glycine betaine transpo 46.0 2.2E+02 0.0075 27.7 20.9 25 34-58 92-116 (539)
11 3tx3_A Uncharacterized protein 41.4 1.7E+02 0.0059 25.1 9.6 35 251-286 23-57 (249)
12 4b4a_A TATC, SEC-independent p 33.9 2.3E+02 0.0077 24.4 10.6 57 299-357 148-204 (249)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.86 E-value=3.1e-19 Score=175.42 Aligned_cols=344 Identities=13% Similarity=0.013 Sum_probs=228.3
Q ss_pred CCCCCChHHHHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhH
Q 043105 34 PAPLSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLG 113 (426)
Q Consensus 34 ~~~~~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~ 113 (426)
++|+.+.++.+...+++++|+|++.+|....+.|. .+++..++.++........+.|...+. |+..+..+..
T Consensus 6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~-------p~~Gg~y~~~ 77 (445)
T 3l1l_A 6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLD-------PSPGGSYAYA 77 (445)
T ss_dssp -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCTTTHHHHH
T ss_pred CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccC-------CCCCCchhhH
Confidence 46889999999999999999999999998888886 478888888999988888888888876 4455677779
Q ss_pred HHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 043105 114 FVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFA 193 (426)
Q Consensus 114 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 193 (426)
++.+||+.+++..+.+++........+....++++..+++.... ....+...+...++......++.|...+++.+.
T Consensus 78 ~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~ 154 (445)
T 3l1l_A 78 RRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKD---PWVLTITCVVVLWIFVLLNIVGPKMITRVQAVA 154 (445)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGS---HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HhHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccc---cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 99999999999999999988888888888888888776664321 112233333344444455667888888888777
Q ss_pred HHHHHHHhhhhhhhhhhhhccC-Cc---cccccCChhhHHHHHHHHHhhhccceeeccchhhcccc-ccchhhHHHHHHH
Q 043105 194 DVVDLAATAVVMVDEVVISLKQ-MP---EVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKK-EKFGGILGLSVTF 268 (426)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~~~~~ 268 (426)
....+..++.++.......+.. .. +.....++.++..++....|+|.|.+......+|+||| |+.+|++..+..+
T Consensus 155 ~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~ 234 (445)
T 3l1l_A 155 TVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLI 234 (445)
T ss_dssp HHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHH
Confidence 6665555444433332221111 10 11111235678889999999999999999999999998 6699999999999
Q ss_pred HHHHHHHHHhHhhhhcCCccccc-------hhcccCCchHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcCCc-----
Q 043105 269 IALMYVGFGVLGYFAFGSETKDI-------ITANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGGE----- 336 (426)
Q Consensus 269 ~~~~Y~~~g~~gy~~fg~~~~~~-------i~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~----- 336 (426)
+.++|....+......+.+...+ +.++...++...+..+...+..+.+....++...+.+...-+++.
T Consensus 235 ~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~ 314 (445)
T 3l1l_A 235 AAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIF 314 (445)
T ss_dssp HHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGG
T ss_pred HHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 99999999988887776543211 111111234445555666666666655555554454444322211
Q ss_pred -------chhHHHHHHHHHHHHHHhh--cC----CccchhhhhchhhhhhhHhHHHHHHHHHHhccc
Q 043105 337 -------YCLWLRWLLVFLVSLVAMS--VP----NFADFLSLVGSSVCCGLGFVLPALFHLLVFKEE 390 (426)
Q Consensus 337 -------~~~~~~~~~~~~~~~~a~~--~~----~~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~~~ 390 (426)
.+.+.......+..++... .| .++.+.++.+ ....+.|.++.+.+++.++++
T Consensus 315 ~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~ 379 (445)
T 3l1l_A 315 ARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGH 379 (445)
T ss_dssp GCCCTTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSS
T ss_pred HhcCCCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 1111111112222233322 12 3555666643 456788999999999988754
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.80 E-value=4.6e-17 Score=159.80 Aligned_cols=343 Identities=10% Similarity=0.045 Sum_probs=219.6
Q ss_pred CCCCCChHHHHHHHHHHhhhhhhchhhHH-HhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhh
Q 043105 34 PAPLSSQTKTFANVFIAIVGAGVLGLPYA-FKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDL 112 (426)
Q Consensus 34 ~~~~~s~~~~~~~l~~s~iG~Gil~lP~~-~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l 112 (426)
++|+.+.++.+...+++++|+|++..|.. ....|. .+++..++.+++.......+.|...+. |+.....+.
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~-------P~~Gg~y~~ 75 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKI-------VSNAGPIAF 75 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTC-------CCTTTHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhC-------CCCCcHHHh
Confidence 47889999999999999999999998755 445565 678888899999999888888888876 344567778
Q ss_pred HHHHhcccc-hhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 043105 113 GFVVCGSIG-RGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSI 191 (426)
Q Consensus 113 ~~~~~G~~~-~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 191 (426)
.++.+||+. .....+.+++........+....++++..+++.... ........+...++.-....++.|...+++.
T Consensus 76 ~~~~~G~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~ 152 (444)
T 3gia_A 76 IHKAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPIN---TFNIAITEIGIVAFFTALNFFGSKAVGRAEF 152 (444)
T ss_dssp HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc---hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999973 233457777777777888888899999888765321 1111122233334444556678888888887
Q ss_pred HHHHHHHHHhhhhhhhhhhhhcc-CCccccccCChhhHHHHHHHHHhhhccceeeccchhhccccc-cchhhHHHHHHHH
Q 043105 192 FADVVDLAATAVVMVDEVVISLK-QMPEVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKE-KFGGILGLSVTFI 269 (426)
Q Consensus 192 ~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~~~~~~ 269 (426)
......+..++..+.......++ +..+.....++.++..++....|+|.|++.+....+|+|||+ +.+|++..+..++
T Consensus 153 ~~~~~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~~ 232 (444)
T 3gia_A 153 FIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIV 232 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHHH
Confidence 77666555554444333322111 111111112345788888999999999999999999999995 5999999999999
Q ss_pred HHHHHHHHhHhhhhcCCcccc----c-h---hcccCCchHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcC-------
Q 043105 270 ALMYVGFGVLGYFAFGSETKD----I-I---TANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKG------- 334 (426)
Q Consensus 270 ~~~Y~~~g~~gy~~fg~~~~~----~-i---~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~------- 334 (426)
.++|....+......+.+... . . ......++...+..+...+..+.+....+....+.+...-++
T Consensus 233 ~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~f 312 (444)
T 3gia_A 233 MFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFF 312 (444)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCSSC
T ss_pred HHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 999999888776666533211 0 0 111111223334445555555555444444434444332221
Q ss_pred --Cc--chhHHHHHHHHHHHHHHhhcCCccchhhhhchhhhhhhHhHHHHHHHHHHhccc
Q 043105 335 --GE--YCLWLRWLLVFLVSLVAMSVPNFADFLSLVGSSVCCGLGFVLPALFHLLVFKEE 390 (426)
Q Consensus 335 --~~--~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~~~ 390 (426)
.+ .+.+.......++.+++. ..+++.+.++.+ .+..+.|.++.+.+++.+|++
T Consensus 313 ~~~~~~~P~~a~~~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~r~~~ 369 (444)
T 3gia_A 313 ERKVWFKSTEGLYITSALGVLFAL-LFNMEGVASITS--AVFMVIYLFVILSHYILIDEV 369 (444)
T ss_dssp CTTSCCSCTHHHHHHHHHHHHHHH-HSCHHHHHHHHH--HHHHHHHHHHHHHHHHTHHHH
T ss_pred hCCCCCCCcHHHHHHHHHHHHHHH-HcCHHHHHHHHH--HHHHHHHHHHHHHHHHhhhcC
Confidence 11 111111112222223332 346777777743 456788999999888887653
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.66 E-value=5.1e-14 Score=140.61 Aligned_cols=277 Identities=10% Similarity=0.028 Sum_probs=166.7
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHH-HHHHHHHHHHH--HhhccccCCccccch
Q 043105 33 KPAPLSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTF-HCMMLLVHTRR--KLESSEHGFTKINSF 109 (426)
Q Consensus 33 ~~~~~~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~-~t~~~l~~~~~--~~~~~~~~~~~~~~y 109 (426)
+.+|+.+.++.+...+++++| +.++|. ....|.. .++..++.+.+.. .....+.|... +. | ....
T Consensus 8 ~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~-------P-~GG~ 75 (511)
T 4djk_A 8 GKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGW-------E-EGGV 75 (511)
T ss_dssp ----CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC-----------CH
T ss_pred ccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccC-------C-CCCh
Confidence 357889999999999999986 667776 4556653 3444444333332 35666667666 54 5 5677
Q ss_pred hhhHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHh--hccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhh
Q 043105 110 GDLGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFF--RTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLA 187 (426)
Q Consensus 110 ~~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~--~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 187 (426)
...+++.+||+.+++..+..++........+....++.+..++ +..... ....+...+...++.-.....+.|...
T Consensus 76 y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~in~~g~~~~~ 153 (511)
T 4djk_A 76 FAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNED--PITKTIAALIILWALALTQFGGTKYTA 153 (511)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGTSC--SSHHHHHHHHHHHHHHHHHHTCSSSHH
T ss_pred hhhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccC--cHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 7789999999999999999999888877777777777776553 222211 112233333333334445566777777
Q ss_pred HHHHHHHHHH-HHHhhhhhhhhhh---hhcc---CCccccccCC--hhhHHHHHHHHHhhhccceeeccchhhcccc-cc
Q 043105 188 PLSIFADVVD-LAATAVVMVDEVV---ISLK---QMPEVAAFGN--LSVFFYGIGVAVYAFEGIGMVLPLEAEMEKK-EK 257 (426)
Q Consensus 188 ~~s~~~~~~~-~~~~~~~i~~~~~---~~~~---~~~~~~~~~~--~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~ 257 (426)
+++.+..... +..++..+..... ...+ .......+++ ......++...+|+|.|.+......+|+||| |+
T Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ 233 (511)
T 4djk_A 154 RIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRD 233 (511)
T ss_dssp HHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccCcccc
Confidence 7766643331 1111111111110 0000 0000011111 1234456778899999999999999999999 55
Q ss_pred chhhHHHHHHHHHHHHHHHHhHhhhhcCCcccc----------chhcccC--CchHHHHHHHHHHHHHHhhhccchhh
Q 043105 258 FGGILGLSVTFIALMYVGFGVLGYFAFGSETKD----------IITANLG--AGFVSVLVQLGLCINLFFTFPLMMHP 323 (426)
Q Consensus 258 ~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~----------~i~~~~~--~~~~~~~~~~~~~~~~~~s~pl~~~~ 323 (426)
.+|++..+..++.++|++..+......+++... .+..+.+ ..+...+..+...++.+.+....+..
T Consensus 234 ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (511)
T 4djk_A 234 YPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVG 311 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988887777654321 1123333 34556666666666666554444443
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=99.16 E-value=3.9e-08 Score=97.16 Aligned_cols=288 Identities=12% Similarity=-0.010 Sum_probs=162.5
Q ss_pred CCCCCChHHHHHHHHHHhhhhhhchhhHHHh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhh
Q 043105 34 PAPLSSQTKTFANVFIAIVGAGVLGLPYAFK-RTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDL 112 (426)
Q Consensus 34 ~~~~~s~~~~~~~l~~s~iG~Gil~lP~~~~-~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l 112 (426)
++|+.+.++-+..-++..++.+.+.+..... ..++..+++..++..++......+......++. .++.++
T Consensus 23 ~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~G---------l~~~v~ 93 (501)
T 2jln_A 23 AERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWG---------INFTVA 93 (501)
T ss_dssp GGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHC---------CCHHHH
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcC---------CChhhh
Confidence 3566788888888888888777776665444 344566677777666666665555556555543 379999
Q ss_pred HHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 043105 113 GFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIF 192 (426)
Q Consensus 113 ~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 192 (426)
+|..||+++..+..+...+.+.|-...-....++.+...+.... +........++..++.++.. ..+.+.+.+++.+
T Consensus 94 ~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~--g~~~~~v~~~i~~~l~~~~~-~~G~~~i~~~~~~ 170 (501)
T 2jln_A 94 ARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLT--GFTNLPLWIVIFGAIQVVTT-FYGITFIRWMNVF 170 (501)
T ss_dssp TTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHH
T ss_pred hHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcchHHHHHHHHHHHHHHHH-HhCHHHHHHHHHH
Confidence 99999999999999999999999888888888888887764221 11112222333444444444 4566777776666
Q ss_pred HHHHHHHHhhhhhhhhhhhhcc----CCccccccCChhhHHHHHHH-HHhhhccceeeccchhhcccccc----------
Q 043105 193 ADVVDLAATAVVMVDEVVISLK----QMPEVAAFGNLSVFFYGIGV-AVYAFEGIGMVLPLEAEMEKKEK---------- 257 (426)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~faf~~~~~i~~i~~~m~~p~~---------- 257 (426)
.....+...+...+........ .....+. .....+..++.. ..+.-....+.+...+.+|++++
T Consensus 171 ~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~-~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~~~~ 249 (501)
T 2jln_A 171 ASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGE-NPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASREGQTKAD 249 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCS-SCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhhhccCCc-cchHHHHHHHHHHHHHHHHHHhccCcccccCCCCccccccchhhcc
Confidence 6555444443333322211110 0000000 112233344333 22222344677888889988766
Q ss_pred --chhhHHHHHHHHHHHHHHHHhHhhhhcCCccccchhcc-cCC-chHHHHHH-HHHHHHHHhhhcc-chhhHHHHHHHh
Q 043105 258 --FGGILGLSVTFIALMYVGFGVLGYFAFGSETKDIITAN-LGA-GFVSVLVQ-LGLCINLFFTFPL-MMHPVYEIVERR 331 (426)
Q Consensus 258 --~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~i~~~-~~~-~~~~~~~~-~~~~~~~~~s~pl-~~~~~~~~~~~~ 331 (426)
.......+..+...+...+|...-...+...+..++.. ++. ..+....- +...++.+++-.. .+++....+.+.
T Consensus 250 ~~~~~g~~lG~~i~~~~~~~lG~~~~~~~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~ 329 (501)
T 2jln_A 250 ARYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAYTLCST 329 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 33344455555665666666654333333323333333 222 22233444 4444555444332 566666667776
Q ss_pred hcC
Q 043105 332 FKG 334 (426)
Q Consensus 332 ~~~ 334 (426)
..+
T Consensus 330 ~~~ 332 (501)
T 2jln_A 330 FPR 332 (501)
T ss_dssp STT
T ss_pred Ccc
Confidence 543
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.41 E-value=0.0011 Score=65.78 Aligned_cols=149 Identities=12% Similarity=-0.025 Sum_probs=82.4
Q ss_pred CCCCCChHHHHHHHHHHhhhhh-hchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhh
Q 043105 34 PAPLSSQTKTFANVFIAIVGAG-VLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDL 112 (426)
Q Consensus 34 ~~~~~s~~~~~~~l~~s~iG~G-il~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l 112 (426)
..|+.+++...+.+..+.+++. .+++|....+.|+......... +.........+..-.++ .+..|.+|.
T Consensus 18 aGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~-~~~~~i~~~~~~p~~~~--------~~~~T~~e~ 88 (530)
T 3dh4_A 18 AGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIE--------KGIYTIPEF 88 (530)
T ss_dssp CCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHH-HHHHHHHHHHTHHHHHH--------TTCCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHHH--------cCCccHHHH
Confidence 3578899999999988888877 5688988777886542211111 11111112222222233 366799999
Q ss_pred HHHHhcccchhHHHHHHHHH-hhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 043105 113 GFVVCGSIGRGIVDVLIILS-QAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSI 191 (426)
Q Consensus 113 ~~~~~G~~~~~i~~~~~~~~-~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 191 (426)
.++.||++.+.+..+...+. .+....+-+...+..++.+++- + ....+++..++........+++...+...
T Consensus 89 l~~Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~Gi------~-~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~ 161 (530)
T 3dh4_A 89 VEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGI------P-LMYSILGLALFALVYSIYGGLSAVVWTDV 161 (530)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC------C-HHHHHHHHHHHHHHTTC------CCSHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------C-HHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 99999999887777655432 2222233333345555555442 2 23334455555566677788888877665
Q ss_pred HHHHHHH
Q 043105 192 FADVVDL 198 (426)
Q Consensus 192 ~~~~~~~ 198 (426)
+=.+.++
T Consensus 162 iQ~~im~ 168 (530)
T 3dh4_A 162 IQVFFLV 168 (530)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444443
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.08 E-value=0.0088 Score=60.12 Aligned_cols=148 Identities=12% Similarity=-0.026 Sum_probs=79.9
Q ss_pred CCCCChHHHHHHHHHHhhhhh-hchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhH
Q 043105 35 APLSSQTKTFANVFIAIVGAG-VLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLG 113 (426)
Q Consensus 35 ~~~~s~~~~~~~l~~s~iG~G-il~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~ 113 (426)
.|+.+++.....+..+.+++. .++.|....+.|+......... ..........+..-.++ .+..|.+|..
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~~-~~~~~~~~~~~~p~~~r--------~~~~T~~e~l 118 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIE--------KGIYTIPEFV 118 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHHH-HHHHHHHHHTHHHHHHH--------TTCCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHh--------CCCCCcHHHH
Confidence 577888988888888877777 4588887777886432221111 11111112222222223 3667999999
Q ss_pred HHHhcccchhHHHHHHHH-HhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 043105 114 FVVCGSIGRGIVDVLIIL-SQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIF 192 (426)
Q Consensus 114 ~~~~G~~~~~i~~~~~~~-~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 192 (426)
++.||++.+.+..++..+ +.+.....-+...+..++.+++- + .....++..++........+++...+...+
T Consensus 119 ~~Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~Gi------~-~~~~i~i~~~i~~~Yt~~GGl~av~~TD~i 191 (593)
T 2xq2_A 119 EKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGI------P-LMYSILGLALFALVYSIYGGLSAVVWTDVI 191 (593)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCC------C-HHHHHHHHHHHHHHHHHTTC---CCHHHHH
T ss_pred HHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc------c-HHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 999999988777655443 22222233333455566666542 2 223333445555666777788877665554
Q ss_pred HHHHHH
Q 043105 193 ADVVDL 198 (426)
Q Consensus 193 ~~~~~~ 198 (426)
=.+.++
T Consensus 192 Q~iiml 197 (593)
T 2xq2_A 192 QVFFLV 197 (593)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=96.93 E-value=0.35 Score=47.32 Aligned_cols=224 Identities=10% Similarity=0.049 Sum_probs=108.1
Q ss_pred CCCChHHHHHHHHHHhhhhh-hchhhHHHhccchhHH----HHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchh
Q 043105 36 PLSSQTKTFANVFIAIVGAG-VLGLPYAFKRTGWLMG----SLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFG 110 (426)
Q Consensus 36 ~~~s~~~~~~~l~~s~iG~G-il~lP~~~~~~G~~~g----~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~ 110 (426)
+=.|..+-+...+++.+|-| +-=.||-..+.|...- ++.+++.|.-..+.-..+.|-..+.. +.+-.
T Consensus 7 ~W~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~--------r~~~i 78 (519)
T 2a65_A 7 HWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQG--------HGTTP 78 (519)
T ss_dssp CCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTT--------CCSHH
T ss_pred cCCcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhcc--------CCCHH
Confidence 34677889999999999999 6678999888874433 33444444444444444444222111 11222
Q ss_pred hhHHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccc---c--C---------------------------
Q 043105 111 DLGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTST---I--L--------------------------- 158 (426)
Q Consensus 111 ~l~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~---~--~--------------------------- 158 (426)
+.-++...++....+.+...+..+....-|.++.+-.+..++.... + |
T Consensus 79 ~a~~~l~~~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~ 158 (519)
T 2a65_A 79 AIFYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGD 158 (519)
T ss_dssp HHHHHHSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSS
T ss_pred HHHHHhcCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCc
Confidence 2233332221112233333333444444444444433322211100 0 0
Q ss_pred ---CC-chhHHHHHHHHHHHHHhhhhhhh-hhhhHHHHHHHHHHHHHhhhhhhhhhhhhcc---C--------Ccccccc
Q 043105 159 ---GM-SAKGFYIWSCLPFQLGLNSIATL-THLAPLSIFADVVDLAATAVVMVDEVVISLK---Q--------MPEVAAF 222 (426)
Q Consensus 159 ---~~-~~~~~~~~i~~~~~~pl~~~~~l-~~l~~~s~~~~~~~~~~~~~~i~~~~~~~~~---~--------~~~~~~~ 222 (426)
+. ........++..++.-++..|++ |...+++.+......+.+++..++...-..+ . .+|....
T Consensus 159 ~~~g~~~~~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L 238 (519)
T 2a65_A 159 EPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKL 238 (519)
T ss_dssp SCBCCCCHHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTST
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHh
Confidence 00 01111111222333345667777 5677777766655555555554443321110 0 1111111
Q ss_pred CChhhHHHHHHHHHhhhcc-ceeeccchhhccccccchhhHHHHHH
Q 043105 223 GNLSVFFYGIGVAVYAFEG-IGMVLPLEAEMEKKEKFGGILGLSVT 267 (426)
Q Consensus 223 ~~~~~~~~~~~~~~faf~~-~~~i~~i~~~m~~p~~~~~~~~~~~~ 267 (426)
.+..-...|.+...|+.+. ...+....+.+|++++..|.......
T Consensus 239 ~~~~vw~~A~gQ~FFSLslG~G~~ity~SY~~~~~n~~~~a~~v~~ 284 (519)
T 2a65_A 239 KDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAAT 284 (519)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhHHHHhHHhhhhcccCCCcChHhhHHHHHH
Confidence 2234568899999999965 44455555556666677665443333
No 8
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=73.39 E-value=68 Score=30.95 Aligned_cols=26 Identities=23% Similarity=0.125 Sum_probs=22.6
Q ss_pred CCCCCChHHHHHHHHHHhhhhhhchh
Q 043105 34 PAPLSSQTKTFANVFIAIVGAGVLGL 59 (426)
Q Consensus 34 ~~~~~s~~~~~~~l~~s~iG~Gil~l 59 (426)
++++-|.++-+..+.++-+|.|++.-
T Consensus 87 ~kPefs~~sW~aMlF~aGmGiGl~fw 112 (509)
T 2wsw_A 87 EKPEFSTASWIFMMFASCTSAAVLFW 112 (509)
T ss_dssp SCCSSCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCccchHHHHHHHHhhhhHHhhh
Confidence 46678999999999999999998864
No 9
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=70.88 E-value=29 Score=30.12 Aligned_cols=40 Identities=13% Similarity=0.365 Sum_probs=31.8
Q ss_pred CCchHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcCCc
Q 043105 297 GAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGGE 336 (426)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~ 336 (426)
+.|.+..-.++....+++.+.|..++-.-..+...+.+++
T Consensus 57 ~~e~f~~~lkvs~~~g~~~a~P~ilyQiw~Fi~PgLy~~E 96 (249)
T 4b4a_A 57 PTEPLFILIKISLAVGFIIASPVILYQFWRFIEPALYSHE 96 (249)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhH
Confidence 4478888889999999999999988877777777665444
No 10
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=45.96 E-value=2.2e+02 Score=27.66 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.6
Q ss_pred CCCCCChHHHHHHHHHHhhhhhhch
Q 043105 34 PAPLSSQTKTFANVFIAIVGAGVLG 58 (426)
Q Consensus 34 ~~~~~s~~~~~~~l~~s~iG~Gil~ 58 (426)
++++-|.++-+..++++-+|.|++.
T Consensus 92 ~kPefS~~sW~aMlF~AGmGiGl~F 116 (539)
T 4ain_A 92 EAPEFRTVSWISMMFAAGMGIGLMF 116 (539)
T ss_dssp CCCSSCHHHHHHHHHTTSCCTHHHH
T ss_pred CCCCCcchHHHHHHHHHhhcchhee
Confidence 3556899999999999999999884
No 11
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=41.35 E-value=1.7e+02 Score=25.13 Aligned_cols=35 Identities=6% Similarity=-0.078 Sum_probs=23.5
Q ss_pred hccccccchhhHHHHHHHHHHHHHHHHhHhhhhcCC
Q 043105 251 EMEKKEKFGGILGLSVTFIALMYVGFGVLGYFAFGS 286 (426)
Q Consensus 251 ~m~~p~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~ 286 (426)
.+.+| ++++.......+..++|..........+++
T Consensus 23 ~i~~p-~lr~~vl~Pllinl~L~~~~~~~~~~~~~~ 57 (249)
T 3tx3_A 23 LIRTK-GLRRYVVVPILTNLILFSLAFTWLYGEVDY 57 (249)
T ss_dssp HHTST-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455 678888888888888877665554444443
No 12
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=33.95 E-value=2.3e+02 Score=24.36 Aligned_cols=57 Identities=12% Similarity=0.346 Sum_probs=30.3
Q ss_pred chHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHHHhhcC
Q 043105 299 GFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGGEYCLWLRWLLVFLVSLVAMSVP 357 (426)
Q Consensus 299 ~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 357 (426)
+.+....+....+.+..-.|+.+.-... ...+..+..+++-|..++.+..+-|+..|
T Consensus 148 ~Yl~fv~~l~l~fGl~FelPvi~~~L~~--~Giv~~~~l~~~Rr~~iv~~~v~aAiiTP 204 (249)
T 4b4a_A 148 MYISFVLKLVVAFGIAFEMPIVLYVLQK--AGVITPEQLASFRKYFIVIAFVIGAIIAP 204 (249)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHH--TTSSCHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcCHHHHHHHhHHHHHHHHHHHHHHCC
Confidence 3455555666666666666655442211 11222223333456666666666677789
Done!