Query 043106
Match_columns 143
No_of_seqs 121 out of 671
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 22:49:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043106.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043106hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kog_A Putative pore-forming t 55.6 2.9 0.0001 34.2 0.5 19 16-34 222-242 (256)
2 4g1u_A Hemin transport system 39.1 14 0.00049 31.0 2.2 13 92-104 92-104 (357)
3 4dve_A Biotin transporter BIOY 36.6 50 0.0017 25.5 4.8 22 37-58 11-32 (198)
4 2lm4_A Succinate dehydrogenase 31.1 1.1E+02 0.0038 21.5 5.5 40 25-64 3-48 (109)
5 3tcm_A Alanine aminotransferas 30.4 11 0.00037 31.7 0.0 7 26-32 4-10 (500)
6 3rlb_A THIT; S-component, ECF 25.6 64 0.0022 24.7 3.7 21 76-96 51-71 (192)
7 2knj_A Microplusin preprotein; 21.3 83 0.0029 21.7 3.2 28 3-30 55-90 (90)
8 3k9f_C DNA topoisomerase 4 sub 20.9 21 0.0007 29.4 0.0 15 88-102 52-66 (268)
9 4asv_A Small glutamine-rich te 20.7 47 0.0016 23.2 1.8 9 75-83 43-51 (92)
10 2l1p_A DNA-binding protein SAT 18.8 1.1E+02 0.0039 20.8 3.4 29 23-51 1-30 (83)
No 1
>3kog_A Putative pore-forming toxin; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 1.85A {Bacteroides vulgatus atcc 8482}
Probab=55.62 E-value=2.9 Score=34.18 Aligned_cols=19 Identities=47% Similarity=0.742 Sum_probs=7.8
Q ss_pred hhhhcCCCCCCC--CCCCCCC
Q 043106 16 LANEAGHGHGQR--LGHSHGF 34 (143)
Q Consensus 16 ~~~~~~~~~~h~--h~h~h~~ 34 (143)
++|.+-..|+|. |+|+|+.
T Consensus 222 ~~~~~~~~h~hap~~~hghgh 242 (256)
T 3kog_A 222 PKNEQIPGHGHAPSHGHGHGH 242 (256)
T ss_dssp EEEECCTTCSSCSBCBTBC--
T ss_pred chhcccCCcccccccccCcCC
Confidence 345554444444 4444443
No 2
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=39.08 E-value=14 Score=30.98 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=6.6
Q ss_pred HHHHHHHHhhccC
Q 043106 92 FALGGCIWQAQFN 104 (143)
Q Consensus 92 faLG~~L~~a~~~ 104 (143)
++++..+.|.-++
T Consensus 92 LavsG~~~Q~~~r 104 (357)
T 4g1u_A 92 LAVSGTIMQGLFR 104 (357)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC
Confidence 3444556665554
No 3
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=36.55 E-value=50 Score=25.54 Aligned_cols=22 Identities=14% Similarity=0.024 Sum_probs=11.5
Q ss_pred CCCchhhhHHHHHHHHHHHHHH
Q 043106 37 GDEESGVWHVVVSQVLELGIVS 58 (143)
Q Consensus 37 ~~~~~~~r~~~~~~vL~iaLs~ 58 (143)
+.+.++.|+.+..-++..-+.+
T Consensus 11 m~~~~k~r~l~~~alfaAliav 32 (198)
T 4dve_A 11 MTNNQKVKTLTYSAFMTAFIII 32 (198)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHHH
Confidence 4556677765555444433333
No 4
>2lm4_A Succinate dehydrogenase assembly factor 2, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Saccharomyces cerevisiae}
Probab=31.06 E-value=1.1e+02 Score=21.55 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=22.8
Q ss_pred CCCCCCCCCCCC-CCCchhhhHHHHHH-----HHHHHHHHHHHHhh
Q 043106 25 GQRLGHSHGFSD-GDEESGVWHVVVSQ-----VLELGIVSHSIIIG 64 (143)
Q Consensus 25 ~h~h~h~h~~~~-~~~~~~~r~~~~~~-----vL~iaLs~HSvfeG 64 (143)
.|.|+|+|.... .+..+..|+|+.-. .+|.-+.+=.+++-
T Consensus 3 ~~~~~~~~~~~~~~e~~~~rr~RL~~rs~rRGmlElDllL~~F~~~ 48 (109)
T 2lm4_A 3 HHHHHHSHMIKRTNEPLDKKRARLIYQSRKRGILETDLLLSGFAAK 48 (109)
T ss_dssp CCCCCCCCCCCCCCSCHHHHHHHHHHHHSCCSSHHHHHHHHHHHHH
T ss_pred cccccccccccCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 455667787663 33444555566554 46666666555544
No 5
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=30.42 E-value=11 Score=31.75 Aligned_cols=7 Identities=29% Similarity=0.491 Sum_probs=0.0
Q ss_pred CCCCCCC
Q 043106 26 QRLGHSH 32 (143)
Q Consensus 26 h~h~h~h 32 (143)
|+|+|+|
T Consensus 4 ~~~~~~~ 10 (500)
T 3tcm_A 4 HHHHHHH 10 (500)
T ss_dssp -------
T ss_pred ccccccc
Confidence 3333333
No 6
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=25.59 E-value=64 Score=24.73 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=11.3
Q ss_pred hhhHHHHHHhhhhHHHHHHHH
Q 043106 76 IRPLIAALSFHQFFEGFALGG 96 (143)
Q Consensus 76 ~~~L~~AI~~HK~~egfaLG~ 96 (143)
..+++++=..+-.-.|+..|.
T Consensus 51 ~iPiii~a~~~Gp~~G~~~g~ 71 (192)
T 3rlb_A 51 CIPILLLSLRRGLTAGLVGGL 71 (192)
T ss_dssp GHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHChHHHHHHHH
Confidence 345555555565555555553
No 7
>2knj_A Microplusin preprotein; antimicrobial peptide, rhipicephalus (boophilus) microplus, antimicrobial protein; NMR {Rhipicephalus microplus}
Probab=21.34 E-value=83 Score=21.71 Aligned_cols=28 Identities=11% Similarity=0.102 Sum_probs=17.3
Q ss_pred chhhhHHHHH--------HHHhhhhcCCCCCCCCCC
Q 043106 3 PKLSTHLQKV--------LLTLANEAGHGHGQRLGH 30 (143)
Q Consensus 3 ~~~~~~~~~~--------~~~~~~~~~~~~~h~h~h 30 (143)
|.+.+.|+++ +-++++.+.+...|.|+|
T Consensus 55 ~dl~~~L~~~Ft~~e~~e~h~la~~C~~~~~h~~~~ 90 (90)
T 2knj_A 55 NNLEQAMSVYFTNEQIKEIHDAATACDPEAHHEHDH 90 (90)
T ss_dssp CSTHHHHHHHSCHHHHHHHHHHHHHSCTTTCSCCCC
T ss_pred CCHhHHHHHHCCHHHHHHHHHHHHhcCccccccCCC
Confidence 5677777765 445666666665555544
No 8
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C*
Probab=20.89 E-value=21 Score=29.40 Aligned_cols=15 Identities=33% Similarity=0.477 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHhhc
Q 043106 88 FFEGFALGGCIWQAQ 102 (143)
Q Consensus 88 ~~egfaLG~~L~~a~ 102 (143)
..||=+-|+...+..
T Consensus 52 lvEGDSAgGsakqgR 66 (268)
T 3k9f_C 52 LVEGDSAGGSAKQGR 66 (268)
T ss_dssp EEECHHHHHHHHHSS
T ss_pred EeeeecccccccccC
Confidence 366766666665554
No 9
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=20.70 E-value=47 Score=23.15 Aligned_cols=9 Identities=22% Similarity=0.176 Sum_probs=5.5
Q ss_pred chhhHHHHH
Q 043106 75 TIRPLIAAL 83 (143)
Q Consensus 75 ~~~~L~~AI 83 (143)
..-+|=+||
T Consensus 43 ~~ESLEVAI 51 (92)
T 4asv_A 43 GADSLNVAM 51 (92)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345666676
No 10
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=18.84 E-value=1.1e+02 Score=20.80 Aligned_cols=29 Identities=14% Similarity=0.079 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC-CCCCchhhhHHHHHHH
Q 043106 23 GHGQRLGHSHGFS-DGDEESGVWHVVVSQV 51 (143)
Q Consensus 23 ~~~h~h~h~h~~~-~~~~~~~~r~~~~~~v 51 (143)
+..|.|+|+|..+ +--....+++++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~kLK~il 30 (83)
T 2l1p_A 1 MGHHHHHHSHMLPPEQWSHTTVRNALKDLL 30 (83)
T ss_dssp CCSCCCCSSCTTTTSCCCHHHHHHHHHHHH
T ss_pred CCcccccccccCCHHHhhHHHHHHHHHHHH
Done!