Query 043106
Match_columns 143
No_of_seqs 121 out of 671
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 22:49:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043106.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043106hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3d31c1 f.58.1.1 (C:13-260) Su 5.5 2.1E+02 0.015 19.2 3.0 27 94-120 70-96 (248)
2 d2r6gf2 f.58.1.1 (F:261-504) M 5.5 2.2E+02 0.016 19.4 3.1 24 97-120 45-68 (244)
3 d1v54m_ f.23.7.1 (M:) Mitochon 5.4 2.7E+02 0.02 15.2 3.0 19 108-126 17-35 (43)
4 d2e74f1 f.23.25.1 (F:1-32) Pet 4.8 2.6E+02 0.019 14.2 2.5 14 56-69 11-24 (32)
5 d2gmga1 a.4.5.82 (A:1-105) Hyp 4.7 1.6E+02 0.012 19.1 1.7 14 40-53 9-22 (105)
6 d1zuna1 c.26.2.2 (A:1-211) Sul 4.3 1.1E+02 0.008 19.2 0.6 10 1-11 1-10 (211)
7 d1nkua_ a.96.1.4 (A:) 3-Methyl 4.0 2.6E+02 0.019 19.4 2.7 20 87-108 30-49 (187)
8 d2r6gg1 f.58.1.1 (G:7-296) Mal 4.0 3.8E+02 0.028 18.3 3.7 34 85-118 91-124 (290)
9 d2e74e1 f.23.24.1 (E:1-32) Pet 3.2 3.5E+02 0.025 13.5 1.9 8 61-68 14-21 (32)
10 d1cola_ f.1.1.1 (A:) Colicin A 2.9 6.1E+02 0.045 17.8 3.8 26 56-83 108-133 (197)
No 1
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=5.55 E-value=2.1e+02 Score=19.21 Aligned_cols=27 Identities=7% Similarity=-0.108 Sum_probs=12.7
Q ss_pred HHHHHHhhccChhHHHHHHHHHHHhhH
Q 043106 94 LGGCIWQAQFNTQSATLMACFFRLNNS 120 (143)
Q Consensus 94 LG~~L~~a~~~~~~~~l~~~iFsl~tP 120 (143)
++..+.+.+.+.++.+.....+..+.|
T Consensus 70 ~a~~~~~~~~~~~~~~~~l~~~p~~ip 96 (248)
T d3d31c1 70 TGYILARFDFPGKRLVESIIDVPVVVP 96 (248)
T ss_dssp HHHHHTTCCCTTHHHHHHHHHGGGTSC
T ss_pred HHHHHHhcccchhhHHHHHHHHHHHHH
Confidence 333444445554444444455544544
No 2
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=5.50 E-value=2.2e+02 Score=19.37 Aligned_cols=24 Identities=0% Similarity=-0.071 Sum_probs=14.7
Q ss_pred HHHhhccChhHHHHHHHHHHHhhH
Q 043106 97 CIWQAQFNTQSATLMACFFRLNNS 120 (143)
Q Consensus 97 ~L~~a~~~~~~~~l~~~iFsl~tP 120 (143)
-+.+.+.|.++.+-..++.-.+.|
T Consensus 45 ~l~~~~~~~~~~~~~~~~~p~~ip 68 (244)
T d2r6gf2 45 LVQWEALRGKAVYRVLLILPYAVP 68 (244)
T ss_dssp HHTCSSSTTHHHHHHHTTHHHHSC
T ss_pred HHHhCcchhHHHHHHHHHHHHHhh
Confidence 344455566666666666666666
No 3
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.38 E-value=2.7e+02 Score=15.20 Aligned_cols=19 Identities=11% Similarity=-0.081 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhhHHHHHHh
Q 043106 108 ATLMACFFRLNNSSRDQHR 126 (143)
Q Consensus 108 ~~l~~~iFsl~tPiGi~iG 126 (143)
+.+.++|.++..|-|+.++
T Consensus 17 igLt~~f~~~L~PaGwVLs 35 (43)
T d1v54m_ 17 IGLSVTFLSFLLPAGWVLY 35 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHH
Confidence 3455777788889988765
No 4
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.77 E-value=2.6e+02 Score=14.20 Aligned_cols=14 Identities=36% Similarity=0.544 Sum_probs=8.7
Q ss_pred HHHHHHHhhhhhcc
Q 043106 56 IVSHSIIIGISLGV 69 (143)
Q Consensus 56 Ls~HSvfeGlaLGv 69 (143)
+||--+|.|.++|+
T Consensus 11 lsfglifvgwglga 24 (32)
T d2e74f1 11 LSFGLIFVGWGLGV 24 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhHHHH
Confidence 34445677777774
No 5
>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}
Probab=4.67 E-value=1.6e+02 Score=19.07 Aligned_cols=14 Identities=14% Similarity=0.228 Sum_probs=9.0
Q ss_pred chhhhHHHHHHHHH
Q 043106 40 ESGVWHVVVSQVLE 53 (143)
Q Consensus 40 ~~~~r~~~~~~vL~ 53 (143)
....|++++.++..
T Consensus 9 ~~T~RerIi~lL~~ 22 (105)
T d2gmga1 9 SATRREKIIELLLE 22 (105)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred cccHHHHHHHHHHc
Confidence 45568888776543
No 6
>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2, CysD {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=4.29 E-value=1.1e+02 Score=19.21 Aligned_cols=10 Identities=60% Similarity=0.956 Sum_probs=7.4
Q ss_pred CCchhhhHHHH
Q 043106 1 MVPKLSTHLQK 11 (143)
Q Consensus 1 ~~~~~~~~~~~ 11 (143)
||-||+ ||++
T Consensus 1 ~~~~~~-~l~~ 10 (211)
T d1zuna1 1 MVDKLT-HLKQ 10 (211)
T ss_dssp GSCCCC-HHHH
T ss_pred Ccchhh-HHHH
Confidence 677887 7776
No 7
>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]}
Probab=4.05 E-value=2.6e+02 Score=19.38 Aligned_cols=20 Identities=25% Similarity=0.154 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHhhccChhHH
Q 043106 87 QFFEGFALGGCIWQAQFNTQSA 108 (143)
Q Consensus 87 K~~egfaLG~~L~~a~~~~~~~ 108 (143)
++||-++| ...|+++++..+
T Consensus 30 ~LFE~L~L--e~fQaGLsW~~I 49 (187)
T d1nkua_ 30 KLFEMICL--EGQQAGLSWITV 49 (187)
T ss_dssp HHHHHHHH--HHHHTTSCHHHH
T ss_pred HHHHHHHH--HHHhccCCHHHH
Confidence 46777777 668888876543
No 8
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=4.04 E-value=3.8e+02 Score=18.33 Aligned_cols=34 Identities=6% Similarity=-0.078 Sum_probs=16.3
Q ss_pred hhhhHHHHHHHHHHHhhccChhHHHHHHHHHHHh
Q 043106 85 FHQFFEGFALGGCIWQAQFNTQSATLMACFFRLN 118 (143)
Q Consensus 85 ~HK~~egfaLG~~L~~a~~~~~~~~l~~~iFsl~ 118 (143)
.=..+-|+-.+-.+.+.+++.++.+....+...+
T Consensus 91 ~~~~~ig~~~a~~l~r~~~~~~~~~~~~~~~~~~ 124 (290)
T d2r6gg1 91 IGIVALSTTCAYAFARMRFPGKATLLKGMLIFQM 124 (290)
T ss_dssp HHHHHHHHHHHHHHHHCCCTTSHHHHHHHHHTTS
T ss_pred hhhhhHHHHHHHHHHHhhhhhHHHHHHHhhcccc
Confidence 3444555555555556555554444433333333
No 9
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.23 E-value=3.5e+02 Score=13.53 Aligned_cols=8 Identities=38% Similarity=1.036 Sum_probs=4.0
Q ss_pred HHhhhhhc
Q 043106 61 IIIGISLG 68 (143)
Q Consensus 61 vfeGlaLG 68 (143)
+|-|++.|
T Consensus 14 lffgiavg 21 (32)
T d2e74e1 14 LFFGIAVG 21 (32)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 44455555
No 10
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=2.91 E-value=6.1e+02 Score=17.76 Aligned_cols=26 Identities=12% Similarity=0.118 Sum_probs=14.0
Q ss_pred HHHHHHHhhhhhccccCccchhhHHHHH
Q 043106 56 IVSHSIIIGISLGVSHSPCTIRPLIAAL 83 (143)
Q Consensus 56 Ls~HSvfeGlaLGv~~~~~~~~~L~~AI 83 (143)
+-+-.+.+.+--|.++. +..+|++=+
T Consensus 108 ~~~~~v~~~~~~g~eTG--nW~Pl~l~~ 133 (197)
T d1cola_ 108 MKVEKVREKSIEGYETG--NWGPLMLEV 133 (197)
T ss_dssp HHHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred hhHHHHHHHHHhcccCC--CchHHHHHH
Confidence 33444555555555443 467777655
Done!