BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043107
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 213 bits (542), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 105/232 (45%), Positives = 151/232 (65%), Gaps = 7/232 (3%)
Query: 5 FTALFLGGVDRLLPLMQDSFPELGLTRKDCREMTFVESIVYLDGYEVEEPINV--DVLLG 62
F+++F GGVD L+ LM SFPELG+ + DC+E +++++ ++ G N ++LL
Sbjct: 286 FSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLD 345
Query: 63 RDFHVR-FFRGKVDYLTEPIPEEAFQGIYDIFLEQDQETNGVLMFFPYGGKISEISESEI 121
R + F K+DY+ +PIPE A I + E+D G+ + +PYGG + EISES I
Sbjct: 346 RSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGA-GMYVLYPYGGIMEEISESAI 404
Query: 122 PYPHRAGNIYTLLYYAGWDLESTDDTYQRHDNMLKKLFNYMTPYVAKNPRTAYINYRDLD 181
P+PHRAG +Y L Y A W+ + + ++H N ++ ++N+ TPYV++NPR AY+NYRDLD
Sbjct: 405 PFPHRAGIMYELWYTASWEKQEDN---EKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLD 461
Query: 182 VGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPF 233
+G N + +A +WG+KYF NF RLV VKT VDP NFFRNEQSIPP
Sbjct: 462 LGKTNHASPNNYTQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPL 513
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 181 bits (459), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 139/233 (59%), Gaps = 11/233 (4%)
Query: 3 SVFTALFLGGVDRLLPLMQDSFPELGLTRKDCREMTFVESIVYLDGYEVEEPINVDVLLG 62
++F AL+LG L+ LM FPELG+ C+EMT++ES+ Y+ + V LL
Sbjct: 273 AMFEALYLGTCKDLVLLMTARFPELGMNATHCKEMTWIESVPYI---PMGPKGTVRDLLN 329
Query: 63 RDFHVRFF-RGKVDYLTEPIPEEAFQGIYDIFLEQDQETNGVLMFFPYGGKISEISESEI 121
R +++ F + K DY+ EPIP+ ++ I+ ++ GV++ PYGG I+ + ES
Sbjct: 330 RTSNIKAFGKYKSDYVLEPIPKSDWEKIFTWLVKPGA---GVMIMDPYGGGIASVPESAT 386
Query: 122 PYPHRAGNIYTLLYYAGWDLESTDDTYQRHDNMLKKLFNYMTPYVAKNPRTAYINYRDLD 181
P+P R+G ++ + Y W E + ++++MTPYV+KNPR AY+NYRDLD
Sbjct: 387 PFPRRSGVLFNIQYVVYWFGEGAAAL---PTQWTRDIYDFMTPYVSKNPRQAYVNYRDLD 443
Query: 182 VGTNNKLGHTSV-QEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPF 233
+G N +G+ S VWG+KYFK NF RL K +DPE++FRNEQSIPP
Sbjct: 444 LGVNQVVGNVSTYASGKVWGEKYFKGNFERLARTKGKIDPEDYFRNEQSIPPL 496
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 168 bits (425), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 130/235 (55%), Gaps = 13/235 (5%)
Query: 3 SVFTALFLGGVDRLLPLMQDSFPELGLTRKDCREMTFVESI--VYLDGYEVEEPINVDVL 60
+ F A++LG L PLM FPELG+ C EM++++SI V+L + E D L
Sbjct: 271 ATFEAMYLGTCKTLTPLMSSKFPELGMNPSHCNEMSWIQSIPFVHLGHRDALE----DDL 326
Query: 61 LGRDFHVR-FFRGKVDYLTEPIPEEAFQGIYDIFLEQDQETNGVLMFFPYGGKISEISES 119
L R + F K DY+ +P P+ ++ I + +L + G+++F PYG IS ES
Sbjct: 327 LNRQNSFKPFAEYKSDYVYQPFPKTVWEQILNTWLVKPGA--GIMIFDPYGATISATPES 384
Query: 120 EIPYPHRAGNIYTLLYYAGWDLESTDDTYQRHDNMLKKLFNYMTPYVAKNPRTAYINYRD 179
P+PHR G ++ + Y W + K ++NYM PYV+KNPR AY NYRD
Sbjct: 385 ATPFPHRKGVLFNIQYVNYWFAPGAAAAPL---SWSKDIYNYMEPYVSKNPRQAYANYRD 441
Query: 180 LDVGTNNKLGHTSV-QEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPF 233
+D+G N + S VWG+KYFK NF RL K VDP ++FRNEQSIPP
Sbjct: 442 IDLGRNEVVNDVSTYASGKVWGQKYFKGNFERLAITKGKVDPTDYFRNEQSIPPL 496
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 150 bits (379), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 122/213 (57%), Gaps = 11/213 (5%)
Query: 24 FPELGLTRKDCREMTFVESIVYLDGYEVEEPINVDVLLGRDFHVRFFRGKVDYLTEPIPE 83
FPELGL +D EM++ ES YL G E +N L F R F+ KVD EP+P
Sbjct: 313 FPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFL---KFDERAFKTKVDLTKEPLPS 369
Query: 84 EAFQGIYDIFLEQDQETNGVLMFFPYGGKISEISESEIPYPHRAGNIYTLLYYAGWDLES 143
+AF G+ + +E NG + +GG++S+IS P+PHR+G + Y W+ +S
Sbjct: 370 KAFYGLLE---RLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWN-QS 425
Query: 144 TDDTYQRHDNMLKKLFNYMTPYVAKNPRTAYINYRDLDVGT----NNKLGHTSVQEASVW 199
+ L+K++ +M P+V+KNPR Y+N+ DLD+G N + + +++ + W
Sbjct: 426 EQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSW 485
Query: 200 GKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPP 232
G+ YF +N+ RL+ KT++DP N F + QSIPP
Sbjct: 486 GESYFLSNYERLIRAKTLIDPNNVFNHPQSIPP 518
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 150 bits (378), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 122/213 (57%), Gaps = 11/213 (5%)
Query: 24 FPELGLTRKDCREMTFVESIVYLDGYEVEEPINVDVLLGRDFHVRFFRGKVDYLTEPIPE 83
FPELGL +D EM++ ES YL G E +N L F R F+ KVD EP+P
Sbjct: 288 FPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFL---KFDERAFKTKVDLTKEPLPS 344
Query: 84 EAFQGIYDIFLEQDQETNGVLMFFPYGGKISEISESEIPYPHRAGNIYTLLYYAGWDLES 143
+AF G+ + +E NG + +GG++S+IS P+PHR+G + Y W+ +S
Sbjct: 345 KAFYGLLE---RLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWN-QS 400
Query: 144 TDDTYQRHDNMLKKLFNYMTPYVAKNPRTAYINYRDLDVGT----NNKLGHTSVQEASVW 199
+ L+K++ +M P+V+KNPR Y+N+ DLD+G N + + +++ + W
Sbjct: 401 EQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSW 460
Query: 200 GKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPP 232
G+ YF +N+ RL+ KT++DP N F + QSIPP
Sbjct: 461 GESYFLSNYERLIRAKTLIDPNNVFNHPQSIPP 493
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 150 bits (378), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 122/213 (57%), Gaps = 11/213 (5%)
Query: 24 FPELGLTRKDCREMTFVESIVYLDGYEVEEPINVDVLLGRDFHVRFFRGKVDYLTEPIPE 83
FPELGL +D EM++ ES YL G E +N L F R F+ KVD EP+P
Sbjct: 288 FPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFL---KFDERAFKTKVDLTKEPLPS 344
Query: 84 EAFQGIYDIFLEQDQETNGVLMFFPYGGKISEISESEIPYPHRAGNIYTLLYYAGWDLES 143
+AF G+ + +E NG + +GG++S+IS P+PHR+G + Y W+ +S
Sbjct: 345 KAFYGLLE---RLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWN-QS 400
Query: 144 TDDTYQRHDNMLKKLFNYMTPYVAKNPRTAYINYRDLDVGT----NNKLGHTSVQEASVW 199
+ L+K++ +M P+V+KNPR Y+N+ DLD+G N + + +++ + W
Sbjct: 401 EQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSW 460
Query: 200 GKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPP 232
G+ YF +N+ RL+ KT++DP N F + QSIPP
Sbjct: 461 GESYFLSNYERLIRAKTLIDPNNVFNHPQSIPP 493
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 150 bits (378), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 122/213 (57%), Gaps = 11/213 (5%)
Query: 24 FPELGLTRKDCREMTFVESIVYLDGYEVEEPINVDVLLGRDFHVRFFRGKVDYLTEPIPE 83
FPELGL +D EM++ ES YL G E +N L F R F+ KVD EP+P
Sbjct: 288 FPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFL---KFDERAFKTKVDLTKEPLPS 344
Query: 84 EAFQGIYDIFLEQDQETNGVLMFFPYGGKISEISESEIPYPHRAGNIYTLLYYAGWDLES 143
+AF G+ + +E NG + +GG++S+IS P+PHR+G + Y W+ +S
Sbjct: 345 KAFYGLLE---RLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWN-QS 400
Query: 144 TDDTYQRHDNMLKKLFNYMTPYVAKNPRTAYINYRDLDVGT----NNKLGHTSVQEASVW 199
+ L+K++ +M P+V+KNPR Y+N+ DLD+G N + + +++ + W
Sbjct: 401 EQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSW 460
Query: 200 GKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPP 232
G+ YF +N+ RL+ KT++DP N F + QSIPP
Sbjct: 461 GESYFLSNYERLIRAKTLIDPNNVFNHPQSIPP 493
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 150 bits (378), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 122/213 (57%), Gaps = 11/213 (5%)
Query: 24 FPELGLTRKDCREMTFVESIVYLDGYEVEEPINVDVLLGRDFHVRFFRGKVDYLTEPIPE 83
FPELGL +D EM++ ES YL G E +N L F R F+ KVD EP+P
Sbjct: 291 FPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFL---KFDERAFKTKVDLTKEPLPS 347
Query: 84 EAFQGIYDIFLEQDQETNGVLMFFPYGGKISEISESEIPYPHRAGNIYTLLYYAGWDLES 143
+AF G+ + +E NG + +GG++S+IS P+PHR+G + Y W+ +S
Sbjct: 348 KAFYGLLE---RLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWN-QS 403
Query: 144 TDDTYQRHDNMLKKLFNYMTPYVAKNPRTAYINYRDLDVGT----NNKLGHTSVQEASVW 199
+ L+K++ +M P+V+KNPR Y+N+ DLD+G N + + +++ + W
Sbjct: 404 EQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSW 463
Query: 200 GKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPP 232
G+ YF +N+ RL+ KT++DP N F + QSIPP
Sbjct: 464 GESYFLSNYERLIRAKTLIDPNNVFNHPQSIPP 496
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 149 bits (377), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 122/213 (57%), Gaps = 11/213 (5%)
Query: 24 FPELGLTRKDCREMTFVESIVYLDGYEVEEPINVDVLLGRDFHVRFFRGKVDYLTEPIPE 83
FPELGL +D EM++ ES YL G E +N L F R F+ KVD EP+P
Sbjct: 294 FPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFL---KFDERAFKTKVDLTKEPLPS 350
Query: 84 EAFQGIYDIFLEQDQETNGVLMFFPYGGKISEISESEIPYPHRAGNIYTLLYYAGWDLES 143
+AF G+ + +E NG + +GG++S+IS P+PHR+G + Y W+ +S
Sbjct: 351 KAFYGLLE---RLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWN-QS 406
Query: 144 TDDTYQRHDNMLKKLFNYMTPYVAKNPRTAYINYRDLDVGT----NNKLGHTSVQEASVW 199
+ L+K++ +M P+V+KNPR Y+N+ DLD+G N + + +++ + W
Sbjct: 407 EQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSW 466
Query: 200 GKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPP 232
G+ YF +N+ RL+ KT++DP N F + QSIPP
Sbjct: 467 GESYFLSNYERLIRAKTLIDPNNVFNHPQSIPP 499
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 149 bits (377), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 122/213 (57%), Gaps = 11/213 (5%)
Query: 24 FPELGLTRKDCREMTFVESIVYLDGYEVEEPINVDVLLGRDFHVRFFRGKVDYLTEPIPE 83
FPELGL +D EM++ ES YL G E +N L F R F+ KVD EP+P
Sbjct: 294 FPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFL---KFDERAFKTKVDLTKEPLPS 350
Query: 84 EAFQGIYDIFLEQDQETNGVLMFFPYGGKISEISESEIPYPHRAGNIYTLLYYAGWDLES 143
+AF G+ + +E NG + +GG++S+IS P+PHR+G + Y W+ +S
Sbjct: 351 KAFYGLLE---RLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWN-QS 406
Query: 144 TDDTYQRHDNMLKKLFNYMTPYVAKNPRTAYINYRDLDVGT----NNKLGHTSVQEASVW 199
+ L+K++ +M P+V+KNPR Y+N+ DLD+G N + + +++ + W
Sbjct: 407 EQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSW 466
Query: 200 GKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPP 232
G+ YF +N+ RL+ KT++DP N F + QSIPP
Sbjct: 467 GESYFLSNYERLIRAKTLIDPNNVFNHPQSIPP 499
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
Length = 523
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 90/229 (39%), Gaps = 27/229 (11%)
Query: 16 LLPLMQDSFPELGLTRKDCREMTFVESIVYLDGY---EVEEPINVDVLL---GRDFHVRF 69
++P+ D+ TR D R + +DG EV EPI L GR
Sbjct: 310 MMPIQVDA------TRPDARRLLDAHIEAVIDGVPPAEVPEPIEQRWLASTPGRGGRGPA 363
Query: 70 FRGKVDYLTEPIPEEAFQGIYDIFLEQDQETNGVLMFFPYGGKISEISESEIPYPHRAGN 129
+ K YL + + + Q +Y+ D G + YGGK++ + + P R
Sbjct: 364 SKTKAGYLRKRLTDRQIQAVYENMTHMDGIDYGAVWLIGYGGKVNTVDPAATALPQRDA- 422
Query: 130 IYTLLYYAGWDLESTDDTYQRHDNMLKKLFNYMTPYVAKNP------RTAYINYRDLDVG 183
I + Y GW + +H ++KL+ + P AYINY D D+
Sbjct: 423 ILKVNYITGW---ANPGNEAKHLTWVRKLYADVYAETGGVPVPNDVSDGAYINYPDSDL- 478
Query: 184 TNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPP 232
+ L + V W Y+K N RL VK DP N F + SI P
Sbjct: 479 ADPGLNTSGVP----WHDLYYKGNHPRLRKVKAAYDPRNHFHHALSIRP 523
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 102 GVLMFFPYGGKISEISESEIPYPHRAGNIYTLLYYAGWDLESTDDTYQRHDNMLKKLFNY 161
GV+ YGGK++ + R +I ++Y W+ + D + R +++L+
Sbjct: 400 GVVALIAYGGKVNAVPADRTAVAQR-DSILKIVYVTTWEDPAQDPVHVR---WIRELYRD 455
Query: 162 M------TPYVAKNPRTAYINYRDLDVGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVK 215
+ P AY+NY D+D+ + + + V W + Y+K+ + RL VK
Sbjct: 456 VYADTGGVPVPGGAADGAYVNYPDVDL-ADEEWNTSGVP----WSELYYKDAYPRLQAVK 510
Query: 216 TMVDPENFFRNEQS--IPP 232
DP N FR+ S +PP
Sbjct: 511 ARWDPRNVFRHALSVRVPP 529
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 8/164 (4%)
Query: 71 RGKVDYLTEPIPEEAFQGIYDIFLEQDQETNGVLMFFPYGGKISEISESEIPYPHRAGNI 130
+ K YL +P +Y L D + G + + YGGK++ + E+ R I
Sbjct: 362 KSKGAYLRKPWTAAQAATLYR-HLSADSQVWGEVSLYSYGGKVNSVPETATATAQRDSII 420
Query: 131 YTLLYYAGWDLESTDDTYQRHDNMLKKLFNYMTPYVAKNPRT--AYINYRDLDVGTNNKL 188
+ D D + +++F + RT +INY D+D+ + +
Sbjct: 421 KVWMSATWMDPAHDDANLAWIREIYREIFATTGGVPVPDDRTEGTFINYPDVDL-VDERW 479
Query: 189 GHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPP 232
+ V W Y+K N+ RL VK DP + FR+ S+ P
Sbjct: 480 NTSGVP----WYTLYYKGNYPRLQKVKARWDPRDVFRHALSVRP 519
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|B Chain B, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|C Chain C, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|D Chain D, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3PQB|A Chain A, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|B Chain B, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|C Chain C, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|D Chain D, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
Length = 501
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 52/129 (40%), Gaps = 7/129 (5%)
Query: 104 LMFFPYGGKISEISESEIPYPHRAGNIYTLLYYAGWDLESTDDTYQRHDNMLKKLFNYMT 163
+MF YGG+I+ S+ P R + + + A D E + + ++ F
Sbjct: 376 VMFNSYGGEINRRGPSDAAVPQRDSVVKSSWFSAWQDAELDELHLGWLRGLYEEFFAGTG 435
Query: 164 PYVAKNPRT--AYINYRDLDVGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPE 221
RT YINY D D+ L + W Y+K+N+ RL K DP
Sbjct: 436 GVPVTGGRTDGCYINYPDADL-----LDPARNRSGEPWHHLYYKDNYARLRSAKRAWDPL 490
Query: 222 NFFRNEQSI 230
N F + SI
Sbjct: 491 NTFHHSMSI 499
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 34.3 bits (77), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 65/161 (40%), Gaps = 23/161 (14%)
Query: 79 EPIPEEAFQGIYDIFLEQDQETNGVLMFFP---YGGK---ISEISESEIPYPHRAGNIYT 132
+ I +A + D + + + F+ +GGK +++++ +E YPHR ++
Sbjct: 327 KSIKGDAVKNFVDYYFDVSNKVKDRFWFYQLDVHGGKNSQVTKVTNAETAYPHR-DKLWL 385
Query: 133 LLYYAGWDLESTDDTYQRHD-NMLKKLFNYMTPYVAKNPRTAYINYRDLDVGTNNKLGHT 191
+ +Y D + TY L N +T + K+ YINY D + +
Sbjct: 386 IQFY---DRYDNNQTYPETSFKFLDGWVNSVTKALPKSDWGMYINYADPRMDRDYAT--- 439
Query: 192 SVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPP 232
K Y+ N RL +K DP + F Q++ P
Sbjct: 440 ---------KVYYGENLARLQKLKAKFDPTDRFYYPQAVRP 471
>pdb|2D7U|A Chain A, Crystal Structure Of Hypothetical Adenylosuccinate
Synthetase, Ph0438 From Pyrococcus Horikoshii Ot3
Length = 339
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 182 VGTNNKLGHTSVQEASVWGKKYFKNNFYR-----LVHVKTMVDPENFFRNEQSIPPFNLV 236
VGTN GH+ V + + F + L+ +VDPE FF + + FN V
Sbjct: 37 VGTN--AGHSVVINGKKYAVRQIPTGFMQTKARLLIGAGVLVDPEVFFHELEQLKDFN-V 93
Query: 237 KDEL 240
KD +
Sbjct: 94 KDRV 97
>pdb|1A0I|A Chain A, Atp-Dependent Dna Ligase From Bacteriophage T7 Complex
With Atp
Length = 348
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 2 VSVFTALFLGGVDRLLPLMQDSFPELGLTRKDCREMTFVESIVYLDGYEVEEPINVDVLL 61
V T L V +LPL+Q+ FPE+ + E+ + + L YE + + L+
Sbjct: 162 CDVMTLLMQEHVKNMLPLLQEYFPEIEWQAAESYEVYDMVELQQL--YEQKRAEGHEGLI 219
Query: 62 GRDFHVRFFRGKVDYLTEPIPEEAFQGI 89
+D + RGK + PE GI
Sbjct: 220 VKDPMCIYKRGKKSGWWKMKPENEADGI 247
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.141 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,804,970
Number of Sequences: 62578
Number of extensions: 350247
Number of successful extensions: 876
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 820
Number of HSP's gapped (non-prelim): 21
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)