Query 043107
Match_columns 240
No_of_seqs 194 out of 1696
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 12:56:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043107.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043107hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08031 BBE: Berberine and be 99.7 2.2E-18 4.7E-23 107.6 3.6 47 173-231 1-47 (47)
2 COG0277 GlcD FAD/FMN-containin 96.0 0.02 4.3E-07 52.3 6.8 36 197-232 423-458 (459)
3 PLN02441 cytokinin dehydrogena 96.0 0.21 4.6E-06 46.6 13.4 35 198-233 486-520 (525)
4 PF09265 Cytokin-bind: Cytokin 95.9 0.0045 9.7E-08 52.9 2.2 128 81-230 148-280 (281)
5 PLN00107 FAD-dependent oxidore 95.4 0.078 1.7E-06 44.6 7.5 59 150-227 138-197 (257)
6 PF04030 ALO: D-arabinono-1,4- 94.5 0.073 1.6E-06 45.0 5.2 58 151-227 197-254 (259)
7 TIGR01678 FAD_lactone_ox sugar 92.8 0.77 1.7E-05 42.1 9.0 58 152-227 381-438 (438)
8 PF02913 FAD-oxidase_C: FAD li 91.8 0.48 1E-05 39.0 6.0 63 147-226 182-245 (248)
9 TIGR01677 pln_FAD_oxido plant- 91.6 1.3 2.8E-05 41.9 9.2 60 149-227 443-503 (557)
10 KOG1231 Proteins containing th 91.3 0.67 1.4E-05 42.1 6.6 34 198-232 466-499 (505)
11 TIGR01679 bact_FAD_ox FAD-link 90.6 2.1 4.6E-05 38.9 9.4 23 206-228 391-413 (419)
12 TIGR00387 glcD glycolate oxida 87.3 1.3 2.8E-05 40.2 5.6 30 197-226 381-411 (413)
13 PLN02805 D-lactate dehydrogena 83.4 3.6 7.8E-05 38.9 6.7 35 197-231 515-550 (555)
14 PRK11230 glycolate oxidase sub 74.0 3.5 7.6E-05 38.5 3.5 33 198-230 439-472 (499)
15 PRK11282 glcE glycolate oxidas 71.3 2.9 6.2E-05 37.2 2.2 21 206-226 324-345 (352)
16 PLN02465 L-galactono-1,4-lacto 70.1 58 0.0013 31.1 10.6 27 198-227 538-564 (573)
17 KOG4730 D-arabinono-1, 4-lacto 63.5 3.8 8.2E-05 37.4 1.3 21 206-226 485-505 (518)
18 TIGR01676 GLDHase galactonolac 45.2 17 0.00037 34.3 2.5 20 208-227 515-534 (541)
19 PF03392 OS-D: Insect pheromon 40.6 16 0.00034 26.0 1.2 15 211-225 78-92 (95)
20 PF14658 EF-hand_9: EF-hand do 37.5 26 0.00056 23.2 1.7 15 209-223 35-49 (66)
21 KOG1233 Alkyl-dihydroxyacetone 36.2 19 0.00041 32.5 1.2 22 207-228 590-611 (613)
22 PF09129 Chol_subst-bind: Chol 32.4 22 0.00047 30.6 0.9 22 206-227 293-314 (321)
23 PF09875 DUF2102: Uncharacteri 22.2 82 0.0018 22.8 2.3 29 206-234 42-70 (104)
24 PF03941 INCENP_ARK-bind: Inne 20.7 41 0.00088 21.4 0.4 21 206-226 25-45 (57)
No 1
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=99.73 E-value=2.2e-18 Score=107.64 Aligned_cols=47 Identities=45% Similarity=0.805 Sum_probs=34.4
Q ss_pred ccccccCCCCCCCCCCCCchhHHhhHHHHHhhhhhHHHHHHHHhhcCcCCCCCCCCCCC
Q 043107 173 AYINYRDLDVGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIP 231 (240)
Q Consensus 173 ~Y~Ny~d~~~~~~~~~~~~~~~~~~~~~~~y~G~n~~RL~~iK~kyDP~nvF~~~~~I~ 231 (240)
+|+||+|.+++. ..|...|||+|++||++||++|||+|||+++|+||
T Consensus 1 aY~Ny~d~~~~~------------~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~ 47 (47)
T PF08031_consen 1 AYVNYPDPDLPG------------DDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP 47 (47)
T ss_dssp --TTS--GGGGS------------SHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred CcccCCCCccch------------hHHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence 599999987752 24889999999999999999999999999999996
No 2
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=95.98 E-value=0.02 Score=52.28 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=30.8
Q ss_pred hHHHHHhhhhhHHHHHHHHhhcCcCCCCCCCCCCCC
Q 043107 197 SVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPP 232 (240)
Q Consensus 197 ~~~~~~y~G~n~~RL~~iK~kyDP~nvF~~~~~I~~ 232 (240)
..|...|+++.+++|++||+.|||+|+|+....+++
T Consensus 423 ~~~~~~~~~~~~~~~~~~k~~~DP~~i~npg~~~~~ 458 (459)
T COG0277 423 AEFLELEPGEAWALLRAIKRAFDPNGIFNPGKLFRL 458 (459)
T ss_pred HHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCccCCC
Confidence 457778888889999999999999999998776654
No 3
>PLN02441 cytokinin dehydrogenase
Probab=95.96 E-value=0.21 Score=46.64 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=31.5
Q ss_pred HHHHHhhhhhHHHHHHHHhhcCcCCCCCCCCCCCCC
Q 043107 198 VWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPF 233 (240)
Q Consensus 198 ~~~~~y~G~n~~RL~~iK~kyDP~nvF~~~~~I~~~ 233 (240)
.| ..-||..|+|..+.|++|||.+++.-.|.|-..
T Consensus 486 ~W-~~HfG~~w~~f~~~K~~yDP~~iL~pgq~if~~ 520 (525)
T PLN02441 486 EW-KRHFGPKWETFVRRKAKFDPLAILSPGQRIFNR 520 (525)
T ss_pred HH-HHHhcchHHHHHHHHhhCCchhhcCCCCccCCC
Confidence 48 578999999999999999999999999999653
No 4
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=95.95 E-value=0.0045 Score=52.94 Aligned_cols=128 Identities=15% Similarity=0.271 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHh-cC--CCCceEEEEEecCccccccCCCCC-CCcCCCCceEEEEEEeEeCC-CCCchhHHHHHHHH
Q 043107 81 IPEEAFQGIYDIFLE-QD--QETNGVLMFFPYGGKISEISESEI-PYPHRAGNIYTLLYYAGWDL-ESTDDTYQRHDNML 155 (240)
Q Consensus 81 l~~~~~~~l~~~~~~-~~--~~~~~~~~~~~~gGav~~v~~~~t-Af~hR~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~ 155 (240)
++...|..+.+.+-+ .. .....-+.+.++.- ++.....+ ..|.-+ ..|.+.+.-.-.. .+. +.-+...+--
T Consensus 148 vP~s~i~dF~~~V~~~il~~~~~~GpiLvYP~~~--~kwd~~~s~v~Pde~-vfylv~lLrsa~P~~~~-~~l~~l~~qN 223 (281)
T PF09265_consen 148 VPKSRIEDFDRGVFKGILKDDGNSGPILVYPLNR--SKWDTRMSAVIPDED-VFYLVALLRSADPSDGP-DDLERLLEQN 223 (281)
T ss_dssp EEHHHHHHHHHHCCCCCTTTS-S-SEEEEEEEEG--GGS-TTSS----SSS-EEEEEEEEE---TTSSC-CHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhccCCCCceEEEEEecc--cccCCCCcccCCCCC-eEEEEEEeCCCCCCCCc-hhHHHHHHHH
Confidence 567778887776433 21 11224566666652 12211112 234444 5555555543311 111 1223333444
Q ss_pred HHHHHhhcccccCCCCcccccccCCCCCCCCCCCCchhHHhhHHHHHhhhhhHHHHHHHHhhcCcCCCCCCCCCC
Q 043107 156 KKLFNYMTPYVAKNPRTAYINYRDLDVGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSI 230 (240)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~Y~Ny~d~~~~~~~~~~~~~~~~~~~~~~~y~G~n~~RL~~iK~kyDP~nvF~~~~~I 230 (240)
+++.+....... ..-.|+... .+ .+.| ..-||..++|+++.|++|||.+++.-.|.|
T Consensus 224 ~~il~~c~~agi--~~k~Yl~~~---~t------------~~dW-~~HFG~~W~~f~~~K~~yDP~~IL~PGq~I 280 (281)
T PF09265_consen 224 RRILEFCRKAGI--GGKQYLPHY---TT------------QEDW-RRHFGPKWERFVERKRRYDPKAILAPGQGI 280 (281)
T ss_dssp HHHHHHHHHTT----EEESS------SS------------HHHH-HHHHGHHHHHHHHHHHHH-TT--B-GGG-S
T ss_pred HHHHHHHHHcCC--ceEECCCCC---CC------------HHHH-HHHhchHHHHHHHHHHhCCchhhcCCCCCC
Confidence 445555532211 011344222 22 2348 578999999999999999999999988887
No 5
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=95.39 E-value=0.078 Score=44.65 Aligned_cols=59 Identities=22% Similarity=0.231 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHh-hcccccCCCCcccccccCCCCCCCCCCCCchhHHhhHHHHHhhhhhHHHHHHHHhhcCcCCCCCCC
Q 043107 150 RHDNMLKKLFNY-MTPYVAKNPRTAYINYRDLDVGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNE 227 (240)
Q Consensus 150 ~~~~~~~~~~~~-l~~~~~~~~~~~Y~Ny~d~~~~~~~~~~~~~~~~~~~~~~~y~G~n~~RL~~iK~kyDP~nvF~~~ 227 (240)
....+.+++-+. |.++.+.--+|-.-|....+ ....| .++.+..+||+++||+++|.+.
T Consensus 138 ~~~~~f~eiEqial~kygGRPHWGK~h~l~~~~-----------------l~~lY--Pr~~dFlavR~~lDP~G~F~N~ 197 (257)
T PLN00107 138 LHEDAMEEIEQMAILKYGALPHWGKNRNAAFDG-----------------AIAKY--KKAGEFLKVKERLDPEGLFSSE 197 (257)
T ss_pred cHHHHHHHHHHHHHHhcCCcCCchhccCCCHHH-----------------HHHHC--cCHHHHHHHHHHhCCCCccCCH
Confidence 445566666655 77765432234333322211 33455 7999999999999999999865
No 6
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=94.51 E-value=0.073 Score=45.00 Aligned_cols=58 Identities=16% Similarity=0.283 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhcccccCCCCcccccccCCCCCCCCCCCCchhHHhhHHHHHhhhhhHHHHHHHHhhcCcCCCCCCC
Q 043107 151 HDNMLKKLFNYMTPYVAKNPRTAYINYRDLDVGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNE 227 (240)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~~~~~~Y~Ny~d~~~~~~~~~~~~~~~~~~~~~~~y~G~n~~RL~~iK~kyDP~nvF~~~ 227 (240)
...|.+.+.+.+..+.+ .-+-+.... .. .+...+.| .++.+..+||+++||+++|.+.
T Consensus 197 ~~~~~~~~e~~~~~~gg----RpHWgK~~~-~~------------~~~l~~~Y--p~~~~F~~~r~~~DP~g~F~n~ 254 (259)
T PF04030_consen 197 YEEFFRAFEQILRKYGG----RPHWGKNHT-LT------------AEQLRKLY--PRLDDFLAVRKKLDPQGVFLND 254 (259)
T ss_dssp HHHHHHHHHHHHGGGT-----EE-TTS------------------HHHHHHT---TTHHHHHHHHHHH-TT-TT--H
T ss_pred HHHHHHHHHHHHHHcCC----EECcCcCCC-CC------------HHHHHHHC--cCHHHHHHHHHHhCCCCCCCCH
Confidence 67788888887776643 223222221 11 12233444 8999999999999999999863
No 7
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=92.77 E-value=0.77 Score=42.09 Aligned_cols=58 Identities=14% Similarity=0.197 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhcccccCCCCcccccccCCCCCCCCCCCCchhHHhhHHHHHhhhhhHHHHHHHHhhcCcCCCCCCC
Q 043107 152 DNMLKKLFNYMTPYVAKNPRTAYINYRDLDVGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNE 227 (240)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~~~~~Y~Ny~d~~~~~~~~~~~~~~~~~~~~~~~y~G~n~~RL~~iK~kyDP~nvF~~~ 227 (240)
..+.+.+-..|.++.++.-+|-.-+.. . .....+.| .++.+-++|++++||+++|.++
T Consensus 381 ~~~f~~~E~i~~~~gGRPHWgK~h~~~----~------------~~~l~~~Y--P~~~~F~~vr~~~DP~g~F~N~ 438 (438)
T TIGR01678 381 LDYFLAYETIMKKFGGKPHWAKAHNVC----K------------QKDFEEMY--PTLHKFCDIRKKLDPTGVFLNS 438 (438)
T ss_pred HHHHHHHHHHHHHcCCCCCchhccccc----C------------HHHHHHHC--cCHHHHHHHHHhhCcccccCCC
Confidence 467777777787775532233322211 1 11243445 8999999999999999999874
No 8
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=91.81 E-value=0.48 Score=38.96 Aligned_cols=63 Identities=11% Similarity=0.219 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHhhcccccCCCCcccccccCCCCCCCCCCCCchhHHhhHHHHHhhhh-hHHHHHHHHhhcCcCCCCC
Q 043107 147 TYQRHDNMLKKLFNYMTPYVAKNPRTAYINYRDLDVGTNNKLGHTSVQEASVWGKKYFKN-NFYRLVHVKTMVDPENFFR 225 (240)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Y~Ny~d~~~~~~~~~~~~~~~~~~~~~~~y~G~-n~~RL~~iK~kyDP~nvF~ 225 (240)
..+...++.+++.+.+....+ -+.-.+. .+ .....|-...+|. .+.-+++||+.+||+|+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~gG------~is~eHG-~G----------~~k~~~~~~~~~~~~~~~~~~iK~~~DP~~ilN 244 (248)
T PF02913_consen 182 EPERAEALWDELYELVLELGG------SISAEHG-IG----------KLKKPYLEEEYGPAALRLMRAIKQAFDPNGILN 244 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-------BBSSSSG-GG----------HHHHHHHCHHCHHHHHHHHHHHHHHH-TTS-BS
T ss_pred HHHHHHHHHHHHHHHHHhccc------ccccccc-hh----------hhhHHHHHHhcchHHHHHHHHhhhccCCccCCC
Confidence 456677788888777765421 2211111 11 1223344455665 7999999999999999997
Q ss_pred C
Q 043107 226 N 226 (240)
Q Consensus 226 ~ 226 (240)
-
T Consensus 245 P 245 (248)
T PF02913_consen 245 P 245 (248)
T ss_dssp T
T ss_pred C
Confidence 3
No 9
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=91.59 E-value=1.3 Score=41.85 Aligned_cols=60 Identities=20% Similarity=0.208 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHh-hcccccCCCCcccccccCCCCCCCCCCCCchhHHhhHHHHHhhhhhHHHHHHHHhhcCcCCCCCCC
Q 043107 149 QRHDNMLKKLFNY-MTPYVAKNPRTAYINYRDLDVGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNE 227 (240)
Q Consensus 149 ~~~~~~~~~~~~~-l~~~~~~~~~~~Y~Ny~d~~~~~~~~~~~~~~~~~~~~~~~y~G~n~~RL~~iK~kyDP~nvF~~~ 227 (240)
.....+.+.+-+. |.++.+..-+|-.-+.... ...+.| .++.+.++|++++||+++|.++
T Consensus 443 ~~~~~~f~~~E~i~l~~yggRPHWGK~h~~~~~-----------------~l~~~Y--P~~~dF~alR~~~DP~g~F~N~ 503 (557)
T TIGR01677 443 RLYEDVIEEIEQMAFFKYGALPHWGKNRNLAFD-----------------GVIRKY--PNADKFLKVKDSYDPKGLFSSE 503 (557)
T ss_pred chHHHHHHHHHHHHHhhcCCCCCccccccchHH-----------------HHHHhC--CCHHHHHHHHHhcCCCCccCCH
Confidence 3455667777774 7777543223333222211 233455 6999999999999999999865
No 10
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=91.33 E-value=0.67 Score=42.09 Aligned_cols=34 Identities=21% Similarity=0.461 Sum_probs=29.7
Q ss_pred HHHHHhhhhhHHHHHHHHhhcCcCCCCCCCCCCCC
Q 043107 198 VWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPP 232 (240)
Q Consensus 198 ~~~~~y~G~n~~RL~~iK~kyDP~nvF~~~~~I~~ 232 (240)
.| ..=||+++.++.++|.+|||.++.+-.|-|+-
T Consensus 466 ~w-~~hfG~~w~~f~~~K~~~DPk~Il~PGq~Ifq 499 (505)
T KOG1231|consen 466 YW-VEHFGEKWVDFMRIKKAYDPKRILNPGQRIFQ 499 (505)
T ss_pred HH-HHHhChhHHHHHHHHhhcCHHHhcCCcccccc
Confidence 35 45689999999999999999999999998873
No 11
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=90.63 E-value=2.1 Score=38.93 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.8
Q ss_pred hhHHHHHHHHhhcCcCCCCCCCC
Q 043107 206 NNFYRLVHVKTMVDPENFFRNEQ 228 (240)
Q Consensus 206 ~n~~RL~~iK~kyDP~nvF~~~~ 228 (240)
.++++..+||+++||+++|.+.+
T Consensus 391 P~~~~F~~~r~~~DP~g~F~n~~ 413 (419)
T TIGR01679 391 PRWDDFAAVRDDLDPDRRFLNPY 413 (419)
T ss_pred cCHHHHHHHHHHhCCCCccCCHH
Confidence 58999999999999999998754
No 12
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=87.34 E-value=1.3 Score=40.24 Aligned_cols=30 Identities=17% Similarity=0.336 Sum_probs=24.3
Q ss_pred hHHHHHhhh-hhHHHHHHHHhhcCcCCCCCC
Q 043107 197 SVWGKKYFK-NNFYRLVHVKTMVDPENFFRN 226 (240)
Q Consensus 197 ~~~~~~y~G-~n~~RL~~iK~kyDP~nvF~~ 226 (240)
..|-...|| ..++-+++||+.+||+|+++-
T Consensus 381 ~~~~~~~~~~~~~~~~~~iK~~fDP~~ilNP 411 (413)
T TIGR00387 381 AEFMPYKFNEKELETMRAIKKAFDPDNILNP 411 (413)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHcCcCcCCCC
Confidence 346666677 479999999999999999973
No 13
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=83.43 E-value=3.6 Score=38.93 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=28.4
Q ss_pred hHHHHHhhh-hhHHHHHHHHhhcCcCCCCCCCCCCC
Q 043107 197 SVWGKKYFK-NNFYRLVHVKTMVDPENFFRNEQSIP 231 (240)
Q Consensus 197 ~~~~~~y~G-~n~~RL~~iK~kyDP~nvF~~~~~I~ 231 (240)
..|-..+|| ..++-+++||+.+||+|+++-..-++
T Consensus 515 ~~~l~~~~g~~~~~lm~~IK~a~DP~gILNPGKi~~ 550 (555)
T PLN02805 515 MKYLEKELGIEALQTMKRIKKALDPNNIMNPGKLIP 550 (555)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcCcCCCCCceeC
Confidence 457778888 47999999999999999998655454
No 14
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=74.00 E-value=3.5 Score=38.46 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=26.0
Q ss_pred HHHHHhhh-hhHHHHHHHHhhcCcCCCCCCCCCC
Q 043107 198 VWGKKYFK-NNFYRLVHVKTMVDPENFFRNEQSI 230 (240)
Q Consensus 198 ~~~~~y~G-~n~~RL~~iK~kyDP~nvF~~~~~I 230 (240)
.|-...|| +.+.-+++||+.+||+|+++-..-|
T Consensus 439 ~~l~~~~g~~~~~~m~~IK~~fDP~~iLNPGk~~ 472 (499)
T PRK11230 439 NQMCAQFNSDEITLFHAVKAAFDPDGLLNPGKNI 472 (499)
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCCCcCCCCCeEe
Confidence 35455677 6799999999999999999855544
No 15
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=71.32 E-value=2.9 Score=37.22 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=17.9
Q ss_pred hh-HHHHHHHHhhcCcCCCCCC
Q 043107 206 NN-FYRLVHVKTMVDPENFFRN 226 (240)
Q Consensus 206 ~n-~~RL~~iK~kyDP~nvF~~ 226 (240)
.+ .+-.++||++|||.++|+-
T Consensus 324 ~~~~~l~~~lK~~fDP~~ilnp 345 (352)
T PRK11282 324 APLLRIHRRLKQAFDPAGIFNP 345 (352)
T ss_pred HHHHHHHHHHHHhcCcccCCCC
Confidence 44 6888899999999999974
No 16
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=70.09 E-value=58 Score=31.07 Aligned_cols=27 Identities=15% Similarity=0.342 Sum_probs=22.2
Q ss_pred HHHHHhhhhhHHHHHHHHhhcCcCCCCCCC
Q 043107 198 VWGKKYFKNNFYRLVHVKTMVDPENFFRNE 227 (240)
Q Consensus 198 ~~~~~y~G~n~~RL~~iK~kyDP~nvF~~~ 227 (240)
...+.| . +.+.++|++++||+++|.++
T Consensus 538 ~L~~~Y--P-~d~F~~~R~~lDP~g~f~N~ 564 (573)
T PLN02465 538 RLRKRF--P-VDAFNKARKELDPKGILSNN 564 (573)
T ss_pred HHHhhC--C-HHHHHHHHHHhCCCCccCCH
Confidence 354555 4 99999999999999999864
No 17
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=63.53 E-value=3.8 Score=37.45 Aligned_cols=21 Identities=24% Similarity=0.643 Sum_probs=19.3
Q ss_pred hhHHHHHHHHhhcCcCCCCCC
Q 043107 206 NNFYRLVHVKTMVDPENFFRN 226 (240)
Q Consensus 206 ~n~~RL~~iK~kyDP~nvF~~ 226 (240)
.|+++..++|+++||.++|..
T Consensus 485 ~n~~~flkvr~~lDP~~lFss 505 (518)
T KOG4730|consen 485 KNLDKFLKVRKELDPKGLFSS 505 (518)
T ss_pred cChHHHHHHHHhcCccchhhh
Confidence 799999999999999999953
No 18
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=45.17 E-value=17 Score=34.31 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=18.0
Q ss_pred HHHHHHHHhhcCcCCCCCCC
Q 043107 208 FYRLVHVKTMVDPENFFRNE 227 (240)
Q Consensus 208 ~~RL~~iK~kyDP~nvF~~~ 227 (240)
+.+-++|++++||+++|.++
T Consensus 515 ~d~F~~~R~~lDP~g~F~N~ 534 (541)
T TIGR01676 515 VDASNKARKALDPNKILSNN 534 (541)
T ss_pred HHHHHHHHHHhCCCCccccH
Confidence 68889999999999999875
No 19
>PF03392 OS-D: Insect pheromone-binding family, A10/OS-D; InterPro: IPR005055 A class of small (14-20 Kd) water-soluble proteins, called odorant binding proteins (OBPs), first discovered in the insect sensillar lymph but also in the mucus of vertebrates, is postulated to mediate the solubilisation of hydrophobic odorant molecules, and thereby to facilitate their transport to the receptor neurons. The product of a gene expressed in the olfactory system of Drosophila melanogaster (Fruit fly), OS-D, shares features common to vertebrate odorant-binding proteins, but has a primary structure unlike odorant-binding proteins []. OS-D derivatives have subsequently been found in chemosensory organs of phylogenetically distinct insects, including cockroaches, phasmids and moths, suggesting that OS-D-like proteins seem to be conserved in the insect phylum.; PDB: 1KX9_A 1N8U_A 1KX8_A 1K19_A 1N8V_A 2GVS_A 2JNT_A.
Probab=40.64 E-value=16 Score=26.03 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=10.9
Q ss_pred HHHHHhhcCcCCCCC
Q 043107 211 LVHVKTMVDPENFFR 225 (240)
Q Consensus 211 L~~iK~kyDP~nvF~ 225 (240)
-.+|.+||||++.+.
T Consensus 78 w~~l~~KyDp~~~y~ 92 (95)
T PF03392_consen 78 WEELVKKYDPEGKYR 92 (95)
T ss_dssp HHHHHHHHTTT-TTH
T ss_pred HHHHHHHHCCCcchh
Confidence 355889999999764
No 20
>PF14658 EF-hand_9: EF-hand domain
Probab=37.52 E-value=26 Score=23.22 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=13.4
Q ss_pred HHHHHHHhhcCcCCC
Q 043107 209 YRLVHVKTMVDPENF 223 (240)
Q Consensus 209 ~RL~~iK~kyDP~nv 223 (240)
.+|+.|.+.+||++-
T Consensus 35 ~~Lq~l~~elDP~g~ 49 (66)
T PF14658_consen 35 SELQDLINELDPEGR 49 (66)
T ss_pred HHHHHHHHHhCCCCC
Confidence 489999999999885
No 21
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=36.24 E-value=19 Score=32.49 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=18.5
Q ss_pred hHHHHHHHHhhcCcCCCCCCCC
Q 043107 207 NFYRLVHVKTMVDPENFFRNEQ 228 (240)
Q Consensus 207 n~~RL~~iK~kyDP~nvF~~~~ 228 (240)
-..-|+++|...||.|+|....
T Consensus 590 G~~llka~K~~lDP~NIFa~~N 611 (613)
T KOG1233|consen 590 GIALLKAIKSELDPANIFASAN 611 (613)
T ss_pred hHHHHHHHHHhcChhhhccccc
Confidence 3678999999999999997543
No 22
>PF09129 Chol_subst-bind: Cholesterol oxidase, substrate-binding; InterPro: IPR015213 The substrate-binding domain found in cholesterol oxidase is composed of an eight-stranded mixed beta-pleated sheet and six alpha-helices. This domain is positioned over the isoalloxazine ring system of the FAD cofactor bound by the FAD-binding domain (IPR006094 from INTERPRO) and forms the roof of the active site cavity, allowing for catalysis of oxidation and isomerisation of cholesterol to cholest-4-en-3-one []. ; PDB: 3JS8_A 1I19_B 2I0K_A.
Probab=32.36 E-value=22 Score=30.63 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=13.5
Q ss_pred hhHHHHHHHHhhcCcCCCCCCC
Q 043107 206 NNFYRLVHVKTMVDPENFFRNE 227 (240)
Q Consensus 206 ~n~~RL~~iK~kyDP~nvF~~~ 227 (240)
+|+.--++.-.+|||++||+++
T Consensus 293 ~~Wd~A~atL~~~DPhriFss~ 314 (321)
T PF09129_consen 293 DNWDTARATLNRYDPHRIFSSP 314 (321)
T ss_dssp CSHHHHHHHHHHH-TT--S--H
T ss_pred CCHHHHHHHHhccCccchhccH
Confidence 4677777777999999999864
No 23
>PF09875 DUF2102: Uncharacterized protein conserved in archaea (DUF2102); InterPro: IPR012025 The exact functionof this protein unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=22.21 E-value=82 Score=22.76 Aligned_cols=29 Identities=17% Similarity=0.487 Sum_probs=23.1
Q ss_pred hhHHHHHHHHhhcCcCCCCCCCCCCCCCC
Q 043107 206 NNFYRLVHVKTMVDPENFFRNEQSIPPFN 234 (240)
Q Consensus 206 ~n~~RL~~iK~kyDP~nvF~~~~~I~~~~ 234 (240)
+-+.++.+--++.||+++|-..-+.||..
T Consensus 42 e~V~~~i~~iR~ld~~~IF~KdRGFppgD 70 (104)
T PF09875_consen 42 EEVDKVIEEIRKLDPNHIFVKDRGFPPGD 70 (104)
T ss_pred HHHHHHHHHHHhhCCCceEeecCCCCCCc
Confidence 35677777778999999999888887743
No 24
>PF03941 INCENP_ARK-bind: Inner centromere protein, ARK binding region; InterPro: IPR005635 This region of the inner centromere protein has been found to be necessary and sufficient for binding to aurora-related kinase. This interaction has been implicated in the coordination of chromosome segregation with cell division in yeast [].; PDB: 2BFX_C 2BFY_C 3ZTX_D 2VGO_D 2VGP_D 2VRX_D 4AF3_D.
Probab=20.66 E-value=41 Score=21.37 Aligned_cols=21 Identities=19% Similarity=0.453 Sum_probs=16.3
Q ss_pred hhHHHHHHHHhhcCcCCCCCC
Q 043107 206 NNFYRLVHVKTMVDPENFFRN 226 (240)
Q Consensus 206 ~n~~RL~~iK~kyDP~nvF~~ 226 (240)
.+|.+...-...+||..+|..
T Consensus 25 ~~L~~~L~~Q~~~Dpd~IFG~ 45 (57)
T PF03941_consen 25 PNLRQALKKQQNIDPDEIFGP 45 (57)
T ss_dssp HHHHHHHHHHHHS-HHHHCTT
T ss_pred HHHHHHHHHHhccCHHHHcCC
Confidence 578777777788899999974
Done!