Your job contains 1 sequence.
>043110
LFAQPLNSQTISKKKKRNDKMSKKKETVKEIFASCCFSSLGLDSTLCDQLRERLGFEAPT
KVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTS
ELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTS
SFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSA
TLNEKVNHLTKISLETPVLIGLDEKKFPEDKSNVHFGSLESDVKEEVEHPNTTLSSSTED
FMLPAKLVQRYVKGIS
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 043110
(316 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2064844 - symbol:AT2G40700 species:3702 "Arabi... 959 1.8e-96 1
DICTYBASE|DDB_G0271708 - symbol:ddx31 "DEAD/DEAH box heli... 552 3.6e-54 2
UNIPROTKB|F8WAJ0 - symbol:DDX31 "Probable ATP-dependent R... 550 3.8e-53 1
UNIPROTKB|Q9H8H2 - symbol:DDX31 "Probable ATP-dependent R... 550 1.2e-52 1
RGD|1304895 - symbol:Ddx31 "DEAD (Asp-Glu-Ala-Asp) box po... 525 1.7e-50 1
UNIPROTKB|F1N5H8 - symbol:DDX31 "Uncharacterized protein"... 520 5.8e-50 1
ZFIN|ZDB-GENE-030131-3973 - symbol:ddx31 "DEAD (Asp-Glu-A... 517 1.4e-49 1
FB|FBgn0027602 - symbol:CG8611 species:7227 "Drosophila m... 519 6.0e-49 1
UNIPROTKB|F1S0U0 - symbol:DDX31 "Uncharacterized protein"... 513 8.5e-49 1
UNIPROTKB|F1NM06 - symbol:DDX31 "Uncharacterized protein"... 506 1.8e-48 1
ASPGD|ASPL0000056064 - symbol:AN0204 species:162425 "Emer... 442 2.1e-42 2
CGD|CAL0000117 - symbol:DBP7 species:5476 "Candida albica... 452 3.2e-42 1
SGD|S000004903 - symbol:HAS1 "ATP-dependent RNA helicase"... 391 8.3e-39 2
SGD|S000001732 - symbol:DBP7 "Putative ATP-dependent RNA ... 420 1.2e-38 1
POMBASE|SPAC1F7.02c - symbol:has1 "ATP-dependent RNA heli... 413 1.3e-38 1
WB|WBGene00015232 - symbol:B0511.6 species:6239 "Caenorha... 401 2.4e-37 1
ASPGD|ASPL0000044206 - symbol:AN1949 species:162425 "Emer... 402 3.6e-37 1
POMBASE|SPBC21H7.04 - symbol:dbp7 "ATP-dependent RNA heli... 399 1.9e-36 1
ZFIN|ZDB-GENE-030131-9685 - symbol:ddx18 "DEAD (Asp-Glu-A... 395 3.6e-36 1
MGI|MGI:1914192 - symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) bo... 390 1.4e-35 1
DICTYBASE|DDB_G0282741 - symbol:ddx18 "DEAD/DEAH box heli... 386 2.2e-35 1
UNIPROTKB|F1NEQ3 - symbol:DDX18 "Uncharacterized protein"... 388 2.3e-35 1
UNIPROTKB|D4A824 - symbol:Ddx18 "Protein Ddx18" species:1... 388 2.3e-35 1
RGD|1549712 - symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box po... 388 2.5e-35 1
TAIR|locus:2152099 - symbol:AT5G65900 species:3702 "Arabi... 386 3.0e-35 1
UNIPROTKB|Q9NVP1 - symbol:DDX18 "ATP-dependent RNA helica... 385 5.2e-35 1
UNIPROTKB|E2RFA3 - symbol:DDX18 "Uncharacterized protein"... 384 6.7e-35 1
GENEDB_PFALCIPARUM|PFF1500c - symbol:PFF1500c "DEAD/DEAH ... 381 7.9e-35 1
UNIPROTKB|C6KTE4 - symbol:PFF1500c "DEAD/DEAH box ATP-dep... 381 7.9e-35 1
CGD|CAL0003050 - symbol:HAS1 species:5476 "Candida albica... 375 2.3e-34 1
UNIPROTKB|Q5AK59 - symbol:HAS1 "ATP-dependent RNA helicas... 375 2.3e-34 1
UNIPROTKB|I3L840 - symbol:DDX18 "Uncharacterized protein"... 378 3.0e-34 1
UNIPROTKB|F1RY13 - symbol:DDX18 "Uncharacterized protein"... 378 3.1e-34 1
UNIPROTKB|I3L7B7 - symbol:DDX18 "Uncharacterized protein"... 378 3.6e-34 1
UNIPROTKB|F1N533 - symbol:DDX18 "Uncharacterized protein"... 376 5.1e-34 1
UNIPROTKB|F1MSX0 - symbol:F1MSX0 "Uncharacterized protein... 376 5.2e-34 1
FB|FBgn0025140 - symbol:pit "pitchoune" species:7227 "Dro... 368 4.0e-33 1
CGD|CAL0000864 - symbol:DRS1 species:5476 "Candida albica... 365 5.5e-33 1
UNIPROTKB|Q5ACK7 - symbol:DRS1 "ATP-dependent RNA helicas... 365 5.5e-33 1
TAIR|locus:2086909 - symbol:AT3G18600 species:3702 "Arabi... 360 1.3e-32 1
SGD|S000003931 - symbol:DRS1 "Nucleolar DEAD-box protein ... 351 3.9e-31 1
UNIPROTKB|Q48AV0 - symbol:CPS_0042 "ATP-dependent RNA hel... 315 1.3e-30 2
TIGR_CMR|CPS_0042 - symbol:CPS_0042 "ATP-dependent RNA he... 315 1.3e-30 2
POMBASE|SPAC823.08c - symbol:SPAC823.08c "ATP-dependent R... 334 3.0e-30 1
UNIPROTKB|Q29S22 - symbol:DDX47 "Probable ATP-dependent R... 331 6.2e-30 1
UNIPROTKB|Q9H0S4 - symbol:DDX47 "Probable ATP-dependent R... 328 1.3e-29 1
ASPGD|ASPL0000013201 - symbol:AN4233 species:162425 "Emer... 327 1.6e-29 1
UNIPROTKB|Q83DM8 - symbol:rhlE "ATP-dependent RNA helicas... 327 1.6e-29 1
TIGR_CMR|CBU_0670 - symbol:CBU_0670 "ATP-dependent RNA he... 327 1.6e-29 1
UNIPROTKB|E2RN03 - symbol:DDX47 "Uncharacterized protein"... 327 1.9e-29 1
MGI|MGI:1915005 - symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) bo... 326 2.1e-29 1
UNIPROTKB|G3V727 - symbol:Ddx47 "Protein Ddx47" species:1... 326 2.1e-29 1
UNIPROTKB|Q5ZLB0 - symbol:DDX47 "Uncharacterized protein"... 325 2.7e-29 1
UNIPROTKB|I3L976 - symbol:DDX47 "Uncharacterized protein"... 325 2.7e-29 1
FB|FBgn0021995 - symbol:Rs1 "Rs1" species:7227 "Drosophil... 334 2.9e-29 1
POMBASE|SPAC30D11.03 - symbol:ddx27 "ATP-dependent RNA he... 333 3.4e-29 1
WB|WBGene00022148 - symbol:Y71G12B.8 species:6239 "Caenor... 332 4.2e-29 1
UNIPROTKB|A4RGU2 - symbol:DBP4 "ATP-dependent RNA helicas... 318 5.5e-29 2
TAIR|locus:2010306 - symbol:EMB1586 "embryo defective 158... 325 8.8e-29 1
ZFIN|ZDB-GENE-031001-8 - symbol:ddx27 "DEAD (Asp-Glu-Ala-... 329 1.0e-28 1
ASPGD|ASPL0000061778 - symbol:AN0589 species:162425 "Emer... 329 1.1e-28 1
UNIPROTKB|F1NQV5 - symbol:DDX27 "Uncharacterized protein"... 327 1.5e-28 1
TAIR|locus:2130918 - symbol:AT4G16630 species:3702 "Arabi... 327 1.7e-28 1
UNIPROTKB|Q8EBV7 - symbol:SO_3388 "ATP-dependent RNA heli... 316 2.4e-28 1
TIGR_CMR|SO_3388 - symbol:SO_3388 "ATP-dependent RNA heli... 316 2.4e-28 1
ZFIN|ZDB-GENE-050522-359 - symbol:zgc:112350 "zgc:112350"... 319 2.7e-28 1
TIGR_CMR|CPS_1418 - symbol:CPS_1418 "ATP-dependent RNA he... 315 3.1e-28 1
POMBASE|SPAC1093.05 - symbol:SPAC1093.05 "ATP-dependent R... 322 5.0e-28 1
UNIPROTKB|Q9KLH6 - symbol:VC_A0768 "ATP-dependent RNA hel... 311 8.2e-28 1
TIGR_CMR|VC_A0768 - symbol:VC_A0768 "ATP-dependent RNA he... 311 8.2e-28 1
TIGR_CMR|CPS_1125 - symbol:CPS_1125 "ATP-dependent RNA he... 312 8.2e-28 1
MGI|MGI:2385884 - symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) bo... 319 1.1e-27 1
WB|WBGene00012059 - symbol:T26G10.1 species:6239 "Caenorh... 312 1.3e-27 1
UNIPROTKB|E1C187 - symbol:DDX27 "Uncharacterized protein"... 318 1.5e-27 1
UNIPROTKB|F1SV16 - symbol:F1SV16 "Uncharacterized protein... 308 1.7e-27 1
UNIPROTKB|Q9KS53 - symbol:VC1407 "ATP-dependent RNA helic... 306 2.8e-27 1
TIGR_CMR|VC_1407 - symbol:VC_1407 "ATP-dependent RNA heli... 306 2.8e-27 1
UNIPROTKB|Q8ECL2 - symbol:SO_3125 "ATP-dependent RNA heli... 306 2.8e-27 1
TIGR_CMR|SO_3125 - symbol:SO_3125 "ATP-dependent RNA heli... 306 2.8e-27 1
FB|FBgn0030631 - symbol:CG6227 species:7227 "Drosophila m... 318 3.5e-27 1
DICTYBASE|DDB_G0281711 - symbol:ddx27 "DEAD/DEAH box heli... 298 4.5e-27 2
UNIPROTKB|F1Q073 - symbol:DDX27 "Uncharacterized protein"... 313 5.1e-27 1
DICTYBASE|DDB_G0284017 - symbol:ddx10 "DEAD/DEAH box heli... 314 5.3e-27 1
UNIPROTKB|J9P9C6 - symbol:DDX27 "Uncharacterized protein"... 313 5.5e-27 1
CGD|CAL0004182 - symbol:HCA4 species:5476 "Candida albica... 311 8.4e-27 1
UNIPROTKB|A1A4H6 - symbol:DDX27 "Probable ATP-dependent R... 311 8.4e-27 1
UNIPROTKB|Q96GQ7 - symbol:DDX27 "Probable ATP-dependent R... 310 1.2e-26 1
FB|FBgn0052344 - symbol:CG32344 species:7227 "Drosophila ... 291 1.2e-26 2
UNIPROTKB|Q9KNA4 - symbol:VC_A0061 "ATP-dependent RNA hel... 300 1.6e-26 1
TIGR_CMR|VC_A0061 - symbol:VC_A0061 "ATP-dependent RNA he... 300 1.6e-26 1
DICTYBASE|DDB_G0277857 - symbol:helB2 "putative U5 small ... 308 2.1e-26 1
FB|FBgn0032919 - symbol:CG9253 species:7227 "Drosophila m... 302 2.1e-26 1
TAIR|locus:2074899 - symbol:AT3G09620 species:3702 "Arabi... 307 3.7e-26 1
UNIPROTKB|I3LQ10 - symbol:LOC100626268 "Uncharacterized p... 303 4.7e-26 1
UNIPROTKB|E2RC35 - symbol:DDX10 "Uncharacterized protein"... 305 4.8e-26 1
CGD|CAL0000056 - symbol:orf19.7546 species:5476 "Candida ... 299 6.1e-26 1
UNIPROTKB|Q08DT0 - symbol:DDX10 "Uncharacterized protein"... 304 6.3e-26 1
UNIPROTKB|P96614 - symbol:cshA "DEAD-box ATP-dependent RN... 281 6.4e-26 2
GENEDB_PFALCIPARUM|PFL2475w - symbol:PFL2475w "DEAD/DEAH ... 302 6.8e-26 1
UNIPROTKB|Q8I4R9 - symbol:PFL2475w "DEAD/DEAH box helicas... 302 6.8e-26 1
WARNING: Descriptions of 742 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2064844 [details] [associations]
symbol:AT2G40700 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0006312
"mitotic recombination" evidence=RCA] [GO:0006406 "mRNA export from
nucleus" evidence=RCA] [GO:0006606 "protein import into nucleus"
evidence=RCA] [GO:0006626 "protein targeting to mitochondrion"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] [GO:0009561 "megagametogenesis" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0042991 "transcription factor
import into nucleus" evidence=RCA] [GO:0051604 "protein maturation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806 HOGENOM:HOG000268799
EMBL:AJ010468 IPI:IPI00518934 PIR:G84832 PIR:T51746
RefSeq:NP_181602.1 UniGene:At.47 ProteinModelPortal:Q7XJN0
SMR:Q7XJN0 STRING:Q7XJN0 PaxDb:Q7XJN0 PRIDE:Q7XJN0
EnsemblPlants:AT2G40700.1 GeneID:818665 KEGG:ath:AT2G40700
GeneFarm:934 TAIR:At2g40700 InParanoid:Q7XJN0 OMA:HRFHWIV
PhylomeDB:Q7XJN0 ProtClustDB:CLSN2683635 Genevestigator:Q7XJN0
GermOnline:AT2G40700 Uniprot:Q7XJN0
Length = 609
Score = 959 (342.6 bits), Expect = 1.8e-96, P = 1.8e-96
Identities = 186/285 (65%), Positives = 234/285 (82%)
Query: 31 IFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAY 90
+FASC FSSLGLD+ L DQL+ER+GFEAPT VQAQAIPVILSGRDVLVNA TGTGKT+AY
Sbjct: 25 LFASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAY 84
Query: 91 LAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGN 150
LAP+I+HLQ +SP++DRS GTFALV+VPT ELCL VYE L+KLLHRF WIVPGYVMGG
Sbjct: 85 LAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEK 144
Query: 151 RSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 210
++KEKARLRKGISIL+ATPG LLDHLK+T+SF+H NLRW+IFDEAD ILELG+GKEIE+I
Sbjct: 145 KAKEKARLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQI 204
Query: 211 LDILGSRNIASIGEGNEV--SNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFP 268
+ +LGS GE +++ +++QNLLLSATLN+KVN L K+SL+ PV+IGLD K
Sbjct: 205 IKLLGSGQNEQ-GEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLDDPVMIGLDNTKLQ 263
Query: 269 EDKSNVHFGSLESDVKEEVEHPNTTLSSSTEDFMLPAKLVQRYVK 313
++ S + +SD ++ V H N + + +ED+ +P++LVQRY++
Sbjct: 264 QNLSIESPAAPDSDAEDMVIHVNKSANPLSEDYGIPSQLVQRYLR 308
>DICTYBASE|DDB_G0271708 [details] [associations]
symbol:ddx31 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0271708 GO:GO:0005524
GenomeReviews:CM000151_GR GO:GO:0003723 EMBL:AAFI02000006
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806 HSSP:P10081
RefSeq:XP_645498.1 ProteinModelPortal:Q869P0
EnsemblProtists:DDB0234202 GeneID:8618126 KEGG:ddi:DDB_G0271708
OMA:THIQEAS Uniprot:Q869P0
Length = 908
Score = 552 (199.4 bits), Expect = 3.6e-54, Sum P(2) = 3.6e-54
Identities = 118/254 (46%), Positives = 161/254 (63%)
Query: 30 EIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVA 89
E F+S + SL L TL L + E PT +Q +I IL G D LV A TG+GKT++
Sbjct: 202 ETFSSMNWGSLQLSETLVRNLVGHMKHEKPTHIQEASITPILKGNDALVKAQTGSGKTLS 261
Query: 90 YLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGG 149
YL P++ L R+ RS G + +++ PT EL +YE LQKLL F WIVPG +MGG
Sbjct: 262 YLIPVVQKLTEQ--RVTRSDGCYCVIITPTRELSSQIYEELQKLLKPFYWIVPGIIMGGE 319
Query: 150 NRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEE 209
NRS EKAR+RKGI+ILVATPG LLDHL++T SF N++W I DEAD++L+LGF K++
Sbjct: 320 NRSAEKARIRKGINILVATPGRLLDHLQNTQSFPTDNIKWCILDEADKLLDLGFEKDVTT 379
Query: 210 ILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPE 269
I+++L S+ KRQN+L+SATL+E ++ L +SL +PV IGLD K
Sbjct: 380 IINLLDSKK--------RTMKFKRQNILVSATLSEGISRLASLSLTSPVYIGLDSKVL-- 429
Query: 270 DKSNVHFGSLESDV 283
+K F + E ++
Sbjct: 430 EKGENPFQAAEKEM 443
Score = 38 (18.4 bits), Expect = 3.6e-54, Sum P(2) = 3.6e-54
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 279 LESDVKEEVEHPNTTLSSSTEDFMLP 304
+E +KE +PN + +S F +P
Sbjct: 582 IEKQIKEATSNPNYRVKTSV--FSVP 605
>UNIPROTKB|F8WAJ0 [details] [associations]
symbol:DDX31 "Probable ATP-dependent RNA helicase DDX31"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AL354735 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:AL160165 HGNC:HGNC:16715
IPI:IPI01010837 ProteinModelPortal:F8WAJ0 SMR:F8WAJ0
Ensembl:ENST00000438527 ArrayExpress:F8WAJ0 Bgee:F8WAJ0
Uniprot:F8WAJ0
Length = 722
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 120/248 (48%), Positives = 158/248 (63%)
Query: 29 KEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTV 88
+++F S F LGL L + L + T VQ Q+IPV+L GRD LV + TG+GKT+
Sbjct: 95 EKVFTSAAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTL 154
Query: 89 AYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGG 148
AY P++ LQ+ +I RS G +ALVLVPT EL L ++ +QKLL F WIVPG +MGG
Sbjct: 155 AYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGG 214
Query: 149 GNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIE 208
R EKARLRKGI+IL++TPG L+DH+K T + + LRW++FDEADRIL+LGF K+I
Sbjct: 215 EKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDIT 274
Query: 209 EILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKF- 267
IL+ + + E KRQN+LLSATL E V L ISL PV I + +K
Sbjct: 275 VILNAVNA----------ECQ--KRQNVLLSATLTEGVTRLADISLHDPVSISVLDKSHD 322
Query: 268 ---PEDKS 272
P+DK+
Sbjct: 323 QLNPKDKA 330
>UNIPROTKB|Q9H8H2 [details] [associations]
symbol:DDX31 "Probable ATP-dependent RNA helicase DDX31"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AL354735 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K14806
EMBL:AF427339 EMBL:AF335567 EMBL:AF335568 EMBL:AF335569
EMBL:AK023695 EMBL:AK027002 EMBL:AK027484 EMBL:AL160165
EMBL:BC012726 IPI:IPI00043990 IPI:IPI00291296 IPI:IPI00552374
IPI:IPI00552716 RefSeq:NP_073616.6 RefSeq:NP_619526.1
UniGene:Hs.660767 ProteinModelPortal:Q9H8H2 SMR:Q9H8H2
IntAct:Q9H8H2 PhosphoSite:Q9H8H2 DMDM:71153334 SWISS-2DPAGE:Q9H8H2
PaxDb:Q9H8H2 PRIDE:Q9H8H2 DNASU:64794 Ensembl:ENST00000310532
Ensembl:ENST00000372153 Ensembl:ENST00000372155
Ensembl:ENST00000372159 GeneID:64794 KEGG:hsa:64794 UCSC:uc004cbq.1
UCSC:uc004cbs.2 UCSC:uc010mzu.1 CTD:64794 GeneCards:GC09M135468
HGNC:HGNC:16715 HPA:HPA020891 neXtProt:NX_Q9H8H2 PharmGKB:PA27218
HOVERGEN:HBG103793 InParanoid:Q9H8H2 OMA:ARIGCHG OrthoDB:EOG42V8FK
PhylomeDB:Q9H8H2 GenomeRNAi:64794 NextBio:66862 ArrayExpress:Q9H8H2
Bgee:Q9H8H2 CleanEx:HS_DDX31 Genevestigator:Q9H8H2
GermOnline:ENSG00000125485 Uniprot:Q9H8H2
Length = 851
Score = 550 (198.7 bits), Expect = 1.2e-52, P = 1.2e-52
Identities = 120/248 (48%), Positives = 158/248 (63%)
Query: 29 KEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTV 88
+++F S F LGL L + L + T VQ Q+IPV+L GRD LV + TG+GKT+
Sbjct: 224 EKVFTSAAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTL 283
Query: 89 AYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGG 148
AY P++ LQ+ +I RS G +ALVLVPT EL L ++ +QKLL F WIVPG +MGG
Sbjct: 284 AYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGG 343
Query: 149 GNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIE 208
R EKARLRKGI+IL++TPG L+DH+K T + + LRW++FDEADRIL+LGF K+I
Sbjct: 344 EKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDIT 403
Query: 209 EILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKF- 267
IL+ + + E KRQN+LLSATL E V L ISL PV I + +K
Sbjct: 404 VILNAVNA----------ECQ--KRQNVLLSATLTEGVTRLADISLHDPVSISVLDKSHD 451
Query: 268 ---PEDKS 272
P+DK+
Sbjct: 452 QLNPKDKA 459
>RGD|1304895 [details] [associations]
symbol:Ddx31 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 31"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304895
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 GeneTree:ENSGT00550000075041
EMBL:CH474001 UniGene:Rn.63648 Ensembl:ENSRNOT00000064323
Uniprot:G3V9V8
Length = 682
Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
Identities = 112/241 (46%), Positives = 153/241 (63%)
Query: 29 KEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTV 88
+++F+ F L L L + L + T VQ Q+IPV+L GRD LV + TG+GKT+
Sbjct: 97 EQVFSPEAFQELDLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTL 156
Query: 89 AYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGG 148
AY P++ LQ+ + +I RS G +ALVLVPT EL L ++ +QKLL F WIVPG +MGG
Sbjct: 157 AYCIPVVQSLQALTSKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGG 216
Query: 149 GNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIE 208
R EKARLRKGI+IL++TPG L+DH+K T + +RW++ DEADRIL+LGF K++
Sbjct: 217 EKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFNRVRWLVVDEADRILDLGFEKDVT 276
Query: 209 EILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFP 268
IL+ + + E KRQN+LLSATL E V L ISL PV I + +K +
Sbjct: 277 VILNAVNA----------ECQ--KRQNVLLSATLTEGVTRLADISLHNPVSISVLDKSWD 324
Query: 269 E 269
+
Sbjct: 325 Q 325
>UNIPROTKB|F1N5H8 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:DAAA02032283
IPI:IPI00837660 UniGene:Bt.35580 ProteinModelPortal:F1N5H8
PRIDE:F1N5H8 Ensembl:ENSBTAT00000042916 Uniprot:F1N5H8
Length = 736
Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
Identities = 114/237 (48%), Positives = 150/237 (63%)
Query: 29 KEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTV 88
+++F S F +L L L + L + T VQ Q+IPV+L GRD LV + TG+GKT+
Sbjct: 126 EKVFTSDAFQALDLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTL 185
Query: 89 AYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGG 148
AY P++ LQ+ +I R G +AL+LVPT EL L ++ +QKLL F WIVPG +MGG
Sbjct: 186 AYCIPVVQSLQAMQSKIQRGDGPYALILVPTRELALQSFDTVQKLLKPFTWIVPGVLMGG 245
Query: 149 GNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIE 208
R EKARLRKGI+IL++TPG L+DH+K T + +RW+I DEADRIL+LGF K++
Sbjct: 246 EKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFRQIRWLILDEADRILDLGFEKDLT 305
Query: 209 EILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIG-LDE 264
IL+ + + E E RQN+LLSATL E V L ISL PV I LDE
Sbjct: 306 VILNAVNA-------ECQE-----RQNVLLSATLTEGVARLADISLHDPVSISVLDE 350
>ZFIN|ZDB-GENE-030131-3973 [details] [associations]
symbol:ddx31 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 31" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-3973 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
KO:K14806 HOGENOM:HOG000268799 GeneTree:ENSGT00550000075041
CTD:64794 HOVERGEN:HBG103793 OrthoDB:EOG42V8FK EMBL:BX276128
IPI:IPI00614096 RefSeq:XP_683832.1 UniGene:Dr.79241
Ensembl:ENSDART00000148314 GeneID:325248 KEGG:dre:325248
InParanoid:A2BFD2 NextBio:20809193 Uniprot:A2BFD2
Length = 739
Score = 517 (187.1 bits), Expect = 1.4e-49, P = 1.4e-49
Identities = 111/238 (46%), Positives = 156/238 (65%)
Query: 28 VKE-IFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGK 86
VKE +F S F L L L L + L + T VQ Q IPV++SG+D +V + TG+GK
Sbjct: 146 VKEKVFTSNTFEELNLHPHLVATLHKVLNVSSMTSVQKQTIPVLMSGKDAVVRSQTGSGK 205
Query: 87 TVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVM 146
T+AY P++ LQ+ P++ RS G A+V+VPT EL L +++ QKLL F WIVPG +M
Sbjct: 206 TLAYGIPMVQFLQAIQPKVKRSDGPLAVVIVPTRELALQSFQMFQKLLRPFTWIVPGVLM 265
Query: 147 GGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 206
GG + EKARLRKGI++L++TPG L+DH+K+T S + +RW+I DEADRIL+LGF K+
Sbjct: 266 GGEKKKAEKARLRKGINVLISTPGRLVDHIKNTLSIAFSAVRWLILDEADRILDLGFEKD 325
Query: 207 IEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDE 264
+ IL+ L N A G + RQN+LLSAT+ E ++ L IS++ PV + + E
Sbjct: 326 LTVILNAL---NAA----GPD-----RQNVLLSATITEGLSRLASISMKDPVSVHVSE 371
>FB|FBgn0027602 [details] [associations]
symbol:CG8611 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806
GeneTree:ENSGT00550000075041 EMBL:AF145609 RefSeq:NP_573214.1
RefSeq:NP_788922.1 UniGene:Dm.3172 ProteinModelPortal:Q86B47
SMR:Q86B47 IntAct:Q86B47 MINT:MINT-776497 PaxDb:Q86B47 PRIDE:Q86B47
EnsemblMetazoa:FBtr0074440 GeneID:32725 KEGG:dme:Dmel_CG8611
UCSC:CG8611-RB FlyBase:FBgn0027602 InParanoid:Q86B47 OMA:YTERDPE
OrthoDB:EOG47SQVT PhylomeDB:Q86B47 GenomeRNAi:32725 NextBio:780053
Bgee:Q86B47 Uniprot:Q86B47
Length = 975
Score = 519 (187.8 bits), Expect = 6.0e-49, P = 6.0e-49
Identities = 106/234 (45%), Positives = 153/234 (65%)
Query: 28 VKE-IFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGK 86
VKE IF S+LGL L + L T VQ + IP +L G+DVLV + TG+GK
Sbjct: 319 VKETIFTGSKISTLGLHPHAVKNLEDLLSIRELTSVQQKTIPEVLQGKDVLVRSQTGSGK 378
Query: 87 TVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVM 146
T+AY P++ LQ PRI R G ALV+VPT EL + YE++QKL+ + WIVPG ++
Sbjct: 379 TLAYALPLVELLQKQQPRIQRKDGVLALVIVPTRELVMQTYELIQKLVKPYTWIVPGSLL 438
Query: 147 GGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 206
GG +R EKARLRKGI+IL+ TPG L+DHL HT+SF T L+++I DEADR+LELG+ ++
Sbjct: 439 GGESRKSEKARLRKGINILIGTPGRLVDHLLHTASFKLTKLQFLILDEADRLLELGYERD 498
Query: 207 IEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
++++++ + + E E+ ++R +LLSATL +V L ++L+ P+ I
Sbjct: 499 VKQLVEAIDKQRAEC--EDKELPQLQR--MLLSATLTSQVQQLAGLTLKNPLYI 548
>UNIPROTKB|F1S0U0 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:CU326339
Ensembl:ENSSSCT00000006300 Uniprot:F1S0U0
Length = 784
Score = 513 (185.6 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 117/282 (41%), Positives = 163/282 (57%)
Query: 29 KEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGT-GKT 87
+ +F S F +L L L + L + T +Q Q+IPV+L GRD LV + TG+ GKT
Sbjct: 180 ESVFTSDAFQALDLHPHLISTINTVLKMSSLTSIQKQSIPVLLEGRDALVRSQTGSEGKT 239
Query: 88 VAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMG 147
+AY P++ LQ+ P+I R G +AL+LVPT EL L ++ +QKLL F WIVPG +MG
Sbjct: 240 LAYCIPMVQSLQAVKPKIQRGDGPYALILVPTRELALQSFDTVQKLLKPFTWIVPGVLMG 299
Query: 148 GGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEI 207
G R EKARLRKGI+IL++TPG L+DH+K T + +RW+I DEADR+L+LGF K+I
Sbjct: 300 GEKRKSEKARLRKGINILISTPGRLVDHIKSTKNMRFCRIRWLILDEADRLLDLGFEKDI 359
Query: 208 EEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKF 267
IL+ + + +RQN+LLSATL E V L ISL PV I + E
Sbjct: 360 ALILNAVNAER------------PERQNVLLSATLTEGVTRLADISLHEPVRISVLEGSQ 407
Query: 268 PE--DKSNVHFGSLESDVKEEVEHPNTTLSSSTEDFMLPAKL 307
+ KS G+ E++ + ++P+KL
Sbjct: 408 DQMHPKSRAILGASPPAASSELDGFAIPVGLEQHVALVPSKL 449
>UNIPROTKB|F1NM06 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:AADN02026504
EMBL:AADN02026505 EMBL:AADN02026506 EMBL:AADN02026507
EMBL:AADN02026508 EMBL:AADN02026509 EMBL:AADN02026510
IPI:IPI00573288 ProteinModelPortal:F1NM06
Ensembl:ENSGALT00000005588 Uniprot:F1NM06
Length = 690
Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
Identities = 118/285 (41%), Positives = 163/285 (57%)
Query: 26 ETVKE-IFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGT 84
+ V+E +F + FS L L L + L + T VQ Q IPV+L G+D LV + TG+
Sbjct: 86 QQVQENVFTTDSFSQLDLHPHLIATITTVLKICSMTSVQKQTIPVLLQGKDALVRSQTGS 145
Query: 85 GKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGY 144
GKT+AY P++ LQ +I RS G +ALVLVPT EL L ++ +QKLL F WIVPG
Sbjct: 146 GKTLAYGIPLVQSLQGMQSKIQRSDGPYALVLVPTRELALQTFDTIQKLLKPFTWIVPGV 205
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 204
+MGG R EKARLRKGI+IL++TPG L+DH+K T +W+I DEADRIL+LGF
Sbjct: 206 LMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTECIHFRRTQWLIIDEADRILDLGFE 265
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDE 264
K++ IL+ L + E RQN+LLSATL E V L ISL P+ I + +
Sbjct: 266 KDVTVILNALNAER--------ET----RQNVLLSATLTEGVTRLADISLNDPIRISIAD 313
Query: 265 KKFPEDKSNVHFGSLESDVKEEVEHPNTTLSSSTEDF--MLPAKL 307
+ K + + ++ N + + + M+P+KL
Sbjct: 314 EIRESLKPALQTEKEANSSSNRMDQENFAVPEKLKQYFMMVPSKL 358
>ASPGD|ASPL0000056064 [details] [associations]
symbol:AN0204 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:BN001308 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AACD01000005
InterPro:IPR025313 Pfam:PF13959 KO:K14806 RefSeq:XP_657808.1
ProteinModelPortal:Q5BGX6 STRING:Q5BGX6
EnsemblFungi:CADANIAT00002528 GeneID:2875981 KEGG:ani:AN0204.2
HOGENOM:HOG000268799 OMA:RAYATHI OrthoDB:EOG4W6S47 Uniprot:Q5BGX6
Length = 778
Score = 442 (160.7 bits), Expect = 2.1e-42, Sum P(2) = 2.1e-42
Identities = 106/257 (41%), Positives = 147/257 (57%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGR-DVLVNAATGTGKTVAYLAPII 95
F++LGL TL L +L +APT +Q +I +L D + A TG+GKT+AYL P++
Sbjct: 153 FTNLGLSPTLAAHLLTKLELKAPTAIQKASITQLLKEETDAFIQAETGSGKTLAYLLPLV 212
Query: 96 NHLQSYS-----------PRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGY 144
+ + S + R SG FA++L PT ELC + +L+ LL WIV G
Sbjct: 213 QRIMALSRAKNEGDAKGDTSVHRDSGLFAIILAPTRELCKQISVVLEGLLRCAHWIVAGT 272
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 204
V+GG + EKARLRKG++ILVATPG L DHL++T + +N+RW++ DE DR++ELGF
Sbjct: 273 VIGGEKKKSEKARLRKGLNILVATPGRLADHLENTQALDVSNVRWLVLDEGDRLMELGFE 332
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDE 264
KE++EI+ L +R S G KR +L SATL V L +ISL+ V I D
Sbjct: 333 KELQEIISKLDARQRPSRIPGVPA---KRATILCSATLKMNVQKLGEISLKDAVHIKADP 389
Query: 265 -----KKFPEDKSNVHF 276
+K EDK F
Sbjct: 390 ADEDGEKTAEDKDGDAF 406
Score = 37 (18.1 bits), Expect = 2.1e-42, Sum P(2) = 2.1e-42
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 270 DKSNVHFGSLESDVKEEVEHPNTTLSSSTE 299
D N HF + E++E N S +E
Sbjct: 453 DSVNFHFEVFTRKLAEQLEGDNPDEGSDSE 482
>CGD|CAL0000117 [details] [associations]
symbol:DBP7 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
CGD:CAL0000117 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
EMBL:AP006852 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 EMBL:AACQ01000156
RefSeq:XP_712474.1 RefSeq:XP_888745.1 ProteinModelPortal:Q59S50
STRING:Q59S50 GeneID:3645903 GeneID:3704147 KEGG:cal:CaO19.6902
KEGG:cal:CaO19_6902 KO:K14806 Uniprot:Q59S50
Length = 727
Score = 452 (164.2 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 99/230 (43%), Positives = 141/230 (61%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGR-DVLVNAATGTGKTVAYLAPII 95
FS LGL+ L L + L F PTK+Q IP ++S D+ V A TG+GKT+A++ PI
Sbjct: 137 FSGLGLNEKLSIHLTDHLRFMHPTKIQQLVIPSLISTENDLFVKAQTGSGKTLAFVLPIF 196
Query: 96 NHLQSYSP-RIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKE 154
+ L + +I+R SG FA++L PT EL +Y +L+ L WIVPG V+GG + E
Sbjct: 197 HKLMRENKFKINRESGLFAIILTPTRELATQIYGVLETLTRCHHWIVPGIVIGGEKKKSE 256
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214
KARLRKG +ILVATPG L DHL++T + + LRW++ DE D+++ELGF I +I +
Sbjct: 257 KARLRKGCNILVATPGRLADHLENTKTLDISQLRWLVLDEGDKLMELGFEDTIAQITAKI 316
Query: 215 GSRN-IASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLD 263
S + IA E + +R N+L SATL+ V L I L+ P +I ++
Sbjct: 317 DSNSKIADTAEKWQGLPSRRINMLCSATLHSNVKKLGSIVLKDPEMISVE 366
>SGD|S000004903 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0008186 "RNA-dependent ATPase
activity" evidence=IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA;IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004903 GO:GO:0005524
GO:GO:0005635 GO:GO:0005730 GO:GO:0003723 EMBL:BK006946
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030686 GO:GO:0006364 GO:GO:0004004 EMBL:X80836
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 OrthoDB:EOG4ZKNVS
PIR:S47451 RefSeq:NP_014017.1 ProteinModelPortal:Q03532 SMR:Q03532
DIP:DIP-4396N IntAct:Q03532 MINT:MINT-482816 STRING:Q03532
PaxDb:Q03532 PeptideAtlas:Q03532 EnsemblFungi:YMR290C GeneID:855335
KEGG:sce:YMR290C CYGD:YMR290c NextBio:979064 Genevestigator:Q03532
GermOnline:YMR290C Uniprot:Q03532
Length = 505
Score = 391 (142.7 bits), Expect = 8.3e-39, Sum P(2) = 8.3e-39
Identities = 93/214 (43%), Positives = 132/214 (61%)
Query: 52 ERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQS--YSPRIDRSS 109
E++GF T VQA+ IP +L+GRDVL A TG+GKT+A+L P I L S + PR +
Sbjct: 58 EKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLHSLKFKPR----N 113
Query: 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATP 169
GT +V+ PT EL L ++ + ++L+ F G V+GG NR +E +L KG+++L+ATP
Sbjct: 114 GTGIIVITPTRELALQIFGVARELME-FHSQTFGIVIGGANRRQEAEKLMKGVNMLIATP 172
Query: 170 GHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVS 229
G LLDHL++T F+ NL+ +I DEADRILE+GF E+ +I+ IL
Sbjct: 173 GRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKIL--------------P 218
Query: 230 NVKRQNLLLSATLNEKVNHLTKISLET-PVLIGL 262
N RQ++L SAT KV L +ISL P+ I +
Sbjct: 219 NEDRQSMLFSATQTTKVEDLARISLRPGPLFINV 252
Score = 40 (19.1 bits), Expect = 8.3e-39, Sum P(2) = 8.3e-39
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 260 IGLDEKKFPEDK-SNVHFGSLESDVK 284
+ L+E +FPE+K +NV LE +K
Sbjct: 410 VPLNEYEFPENKIANVQ-SQLEKLIK 434
>SGD|S000001732 [details] [associations]
symbol:DBP7 "Putative ATP-dependent RNA helicase of the
DEAD-box family" species:4932 "Saccharomyces cerevisiae"
[GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001732
GO:GO:0005524 GO:GO:0005730 EMBL:BK006944 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000463
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806 HOGENOM:HOG000268799
OMA:RAYATHI OrthoDB:EOG4W6S47 EMBL:Z28249 PIR:S38093
RefSeq:NP_012949.1 ProteinModelPortal:P36120 SMR:P36120
DIP:DIP-1833N IntAct:P36120 MINT:MINT-395227 STRING:P36120
PaxDb:P36120 PeptideAtlas:P36120 EnsemblFungi:YKR024C GeneID:853894
KEGG:sce:YKR024C CYGD:YKR024c GeneTree:ENSGT00550000075041
NextBio:975207 Genevestigator:P36120 GermOnline:YKR024C
Uniprot:P36120
Length = 742
Score = 420 (152.9 bits), Expect = 1.2e-38, P = 1.2e-38
Identities = 94/236 (39%), Positives = 144/236 (61%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVIL--SGR-DVLVNAATGTGKTVAYLAP 93
F+SLG+ S L L +++ + PT +Q QAIP I+ +G+ D ++A TG+GKT++YL P
Sbjct: 145 FASLGVSSLLVSHLEQKMRIKKPTSIQKQAIPQIIGNAGKNDFFIHAQTGSGKTLSYLLP 204
Query: 94 IINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSK 153
II+ + + +DR+SG FALV+ PT EL +Y + L+ ++VP ++GG +
Sbjct: 205 IISTILNMDTHVDRTSGAFALVIAPTRELASQIYHVCSTLVSCCHYLVPCLLIGGERKKS 264
Query: 154 EKARLRKGISILVATPGHLLDHLKHTSSF---LHTNLRWIIFDEADRILELGFGKEIEEI 210
EKARLRKG + ++ TPG +LDHL++T L +LR+I+ DE D+++ELGF + I EI
Sbjct: 265 EKARLRKGCNFIIGTPGRVLDHLQNTKVIKEQLSQSLRYIVLDEGDKLMELGFDETISEI 324
Query: 211 LDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKK 266
+ I+ I S E K ++L SATL + VN L ++L+ LI KK
Sbjct: 325 IKIVHDIPINS--EKFPKLPHKLVHMLCSATLTDGVNRLRNVALKDYKLISNGTKK 378
>POMBASE|SPAC1F7.02c [details] [associations]
symbol:has1 "ATP-dependent RNA helicase Has1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1F7.02c GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY OrthoDB:EOG4ZKNVS PIR:S62574 RefSeq:NP_594488.1
ProteinModelPortal:Q09916 STRING:Q09916 EnsemblFungi:SPAC1F7.02c.1
GeneID:2541668 KEGG:spo:SPAC1F7.02c NextBio:20802761 Uniprot:Q09916
Length = 578
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 97/231 (41%), Positives = 142/231 (61%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
FS L L + ++E +GFE T++Q ++IP +L+GRDVL A TG+GKT+A+L P I
Sbjct: 91 FSDLQLSENIQKAIKE-MGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIE 149
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L Y+ + +GT +++ PT EL L ++ + ++LL ++ G V+GG NR E
Sbjct: 150 ML--YALKFKPRNGTGVIIISPTRELALQIFGVAKELL-KYHHQTFGIVIGGANRRAEAD 206
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216
+L KG+++LVATPG LLDHL++T F+ NLR ++ DEADRILE+GF E+ +I+ IL S
Sbjct: 207 KLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPS 266
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLET-PVLIGLDEKK 266
N RQ LL SAT KV L +ISL+ P+ + +D K
Sbjct: 267 EN--------------RQTLLFSATQTTKVEDLARISLKPGPLYVNVDSGK 303
>WB|WBGene00015232 [details] [associations]
symbol:B0511.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0043652 "engulfment of apoptotic cell"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0040007 GO:GO:0002119 GO:GO:0003723 GO:GO:0043652
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 HSSP:P10081 EMBL:FO080219
PIR:T33113 RefSeq:NP_492779.1 ProteinModelPortal:O61815 SMR:O61815
DIP:DIP-27278N MINT:MINT-1068292 STRING:O61815 PaxDb:O61815
EnsemblMetazoa:B0511.6.1 EnsemblMetazoa:B0511.6.2 GeneID:172954
KEGG:cel:CELE_B0511.6 UCSC:B0511.6.1 CTD:172954 WormBase:B0511.6
InParanoid:O61815 NextBio:877669 Uniprot:O61815
Length = 544
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 100/244 (40%), Positives = 153/244 (62%)
Query: 26 ET-VKEIFASCCFSSL-G-LDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAAT 82
ET V E F+SL G +++ L + + LGF T++QA++I +L G+DVL +A T
Sbjct: 56 ETKVSEFLTKTTFASLEGKVNANLLKAV-QGLGFTTMTEIQAKSIDPLLEGKDVLASAKT 114
Query: 83 GTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVP 142
G+GKT+A+L P I L + + + +GT +++ PT EL + Y +L +LL +
Sbjct: 115 GSGKTLAFLLPAIELLHKLNWK--QHNGTGVIIVSPTRELSMQTYGVLSELLEGSN-LTY 171
Query: 143 GYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELG 202
G VMGG NRS EK +L KG+SILVATPG LLDHL++T +FL N++ +I DEADRIL++G
Sbjct: 172 GLVMGGSNRSAEKDKLAKGVSILVATPGRLLDHLQNTDNFLVRNMKCLIIDEADRILDIG 231
Query: 203 FGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLET-PVLIG 261
F E++++L R++ +RQ++L SAT + KV+ L K++L + PV +
Sbjct: 232 FEIEMQQVL-----RHLPK----------QRQSMLFSATHSPKVDELVKLALHSNPVRVS 276
Query: 262 LDEK 265
+ EK
Sbjct: 277 VHEK 280
>ASPGD|ASPL0000044206 [details] [associations]
symbol:AN1949 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005635 "nuclear envelope" evidence=IEA] [GO:0030687
"preribosome, large subunit precursor" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 EMBL:BN001307
GO:GO:0003723 EMBL:AACD01000029 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_659553.1
ProteinModelPortal:Q5BBY1 STRING:Q5BBY1
EnsemblFungi:CADANIAT00008609 GeneID:2875602 KEGG:ani:AN1949.2
OrthoDB:EOG4ZKNVS Uniprot:Q5BBY1
Length = 609
Score = 402 (146.6 bits), Expect = 3.6e-37, P = 3.6e-37
Identities = 95/231 (41%), Positives = 137/231 (59%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+ LGL ++E +GFE T++Q + IP +L+GRDVL A TG+GKT+A+L P I
Sbjct: 130 FTELGLSEKTLQGIKE-MGFETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE 188
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L + R +GT +V+ PT EL L ++ + ++LL G V+GG NR E
Sbjct: 189 MLSAL--RFKPRNGTGVIVVSPTRELALQIFGVARELLTAHSQTY-GIVIGGANRRAEAE 245
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216
+L KG+++L+ATPG LLDHL++T F+ NL+ ++ DEADRILE+GF E+ +I+ IL
Sbjct: 246 KLTKGVNLLIATPGRLLDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIIKIL-- 303
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLET-PVLIGLDEKK 266
N RQ +L SAT KV L +ISL P+ I +D +K
Sbjct: 304 ------------PNEDRQTMLFSATQTTKVEDLARISLRPGPLYINVDHRK 342
>POMBASE|SPBC21H7.04 [details] [associations]
symbol:dbp7 "ATP-dependent RNA helicase Dbp7
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBC21H7.04
GO:GO:0005524 GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K14806
HOGENOM:HOG000268799 OrthoDB:EOG4W6S47 PIR:T39930
RefSeq:NP_595929.1 ProteinModelPortal:O60173 STRING:O60173
EnsemblFungi:SPBC21H7.04.1 GeneID:2540518 KEGG:spo:SPBC21H7.04
NextBio:20801645 Uniprot:O60173
Length = 709
Score = 399 (145.5 bits), Expect = 1.9e-36, P = 1.9e-36
Identities = 80/224 (35%), Positives = 138/224 (61%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILS--GRDVLVNAATGTGKTVAYLAPI 94
F+ + LD+ L D L ++ APT +Q+ +P +L+ +D + A TG+GKT+AYL PI
Sbjct: 140 FAGVQLDTQLADHLNNKMNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPI 199
Query: 95 INHLQSYSPRID-RSSGTFALVLVPTSELCLLVYEILQKLLHR--FRWIVPGYVMGGGNR 151
+ L + R+SG +A+++ PT ELC +Y + KL + WIV V+GG +
Sbjct: 200 VQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKK 259
Query: 152 SKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 211
EKAR+RKG++IL+ TPG L DHL++T + + +RW++ DE DR++++GF + + +IL
Sbjct: 260 KSEKARIRKGVNILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKIL 319
Query: 212 DILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLE 255
L S++ + I + + + ++ +L SAT+ + V L+ +L+
Sbjct: 320 SYLESQS-SIIKKDLSIPS-RKVTMLCSATMKDTVKRLSDSALK 361
>ZFIN|ZDB-GENE-030131-9685 [details] [associations]
symbol:ddx18 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 18" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0030099 "myeloid
cell differentiation" evidence=IMP] [GO:0030097 "hemopoiesis"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-9685
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0030099 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K13179 CTD:8886
HOVERGEN:HBG105702 EMBL:AY648748 IPI:IPI00492099
RefSeq:NP_001003411.1 UniGene:Dr.24235 ProteinModelPortal:Q6DRL1
STRING:Q6DRL1 PRIDE:Q6DRL1 GeneID:321127 KEGG:dre:321127
InParanoid:Q6DRL1 NextBio:20807243 ArrayExpress:Q6DRL1 Bgee:Q6DRL1
Uniprot:Q6DRL1
Length = 653
Score = 395 (144.1 bits), Expect = 3.6e-36, P = 3.6e-36
Identities = 98/237 (41%), Positives = 145/237 (61%)
Query: 32 FASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYL 91
FAS S + ++TL ++E +GF+ T++Q + I +L GRDVL A TG+GKT+A+L
Sbjct: 161 FAS--LSEVVSENTL-KGVKE-MGFDTMTEIQHKTIRPLLEGRDVLAAAKTGSGKTLAFL 216
Query: 92 APIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL-HRFRWIVPGYVMGGGN 150
P I + Y + +GT +VL PT EL + Y +L++L+ H G +MGG N
Sbjct: 217 IPSIELI--YKLKFMPRNGTGVIVLSPTRELAMQTYGVLKELMTHHVHTY--GLIMGGSN 272
Query: 151 RSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 210
RS E +L G++ILVATPG LLDHL++T F+ NL+ +I DEADRILE+GF +E+++I
Sbjct: 273 RSAEAQKLANGVNILVATPGRLLDHLQNTPGFMFKNLQCLIIDEADRILEVGFEEELKQI 332
Query: 211 LDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLET-PVLIGLDEKK 266
+ +L KRQ++L SAT KV L +ISL+ P+ +G+D+ K
Sbjct: 333 IKLLPK---------------KRQSMLFSATQTRKVEDLARISLKKEPLYVGVDDNK 374
>MGI|MGI:1914192 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914192
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AK075864 EMBL:AK019845 EMBL:BC028246
EMBL:BC103776 IPI:IPI00459381 RefSeq:NP_080136.2 UniGene:Mm.44219
ProteinModelPortal:Q8K363 SMR:Q8K363 STRING:Q8K363
PhosphoSite:Q8K363 PaxDb:Q8K363 PRIDE:Q8K363
Ensembl:ENSMUST00000001724 GeneID:66942 KEGG:mmu:66942
InParanoid:Q8K363 NextBio:323084 Bgee:Q8K363 CleanEx:MM_DDX18
Genevestigator:Q8K363 GermOnline:ENSMUSG00000001674 Uniprot:Q8K363
Length = 660
Score = 390 (142.3 bits), Expect = 1.4e-35, P = 1.4e-35
Identities = 95/239 (39%), Positives = 149/239 (62%)
Query: 32 FASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYL 91
FAS S+L ++TL + E +GF+ T++Q ++I +L GRD+L A TG+GKT+A+L
Sbjct: 169 FAS--LSNLVNENTL--KAIEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFL 224
Query: 92 APIINHLQS--YSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL-HRFRWIVPGYVMGG 148
P+I + + PR +GT L+L PT EL + + +L++L+ H G +MGG
Sbjct: 225 IPVIELIVKLKFMPR----NGTGVLILSPTRELAMQTFGVLKELMTHHVHTY--GLIMGG 278
Query: 149 GNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIE 208
NRS E +L GI+I+VATPG LLDH+++T F++ NL+ ++ DEADRIL++GF +E++
Sbjct: 279 SNRSAEVQKLLNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELK 338
Query: 209 EILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLET-PVLIGLDEKK 266
+I+ +L +R RQ +L SAT KV L +ISL+ P+ +G+D+ K
Sbjct: 339 QIIKLLPAR---------------RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDK 382
>DICTYBASE|DDB_G0282741 [details] [associations]
symbol:ddx18 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282741 GO:GO:0005524
GO:GO:0005730 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 InterPro:IPR025313 Pfam:PF13959
RefSeq:XP_640236.1 ProteinModelPortal:Q54S03 STRING:Q54S03
EnsemblProtists:DDB0234194 GeneID:8623775 KEGG:ddi:DDB_G0282741
KO:K13179 OMA:KDGYRSY Uniprot:Q54S03
Length = 602
Score = 386 (140.9 bits), Expect = 2.2e-35, P = 2.2e-35
Identities = 89/233 (38%), Positives = 145/233 (62%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
FS+L ++ + E +GF+ T +QA++I +L G+D+L A TG+GKT+A+L P I
Sbjct: 121 FSNLPIEENTKKSIEE-MGFKKMTPIQAKSILPLLEGKDLLGAARTGSGKTLAFLIPAIE 179
Query: 97 HL--QSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKE 154
L ++ PR +GT +++ PT EL L +Y + ++L+ ++ G V+GG ++ E
Sbjct: 180 VLVKSNFKPR----NGTGVIIISPTRELALQIYGVARELM-KYHTQTHGIVIGGASKKPE 234
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214
+ RL KG+++LVATPG LLDHL++T F+ NL+ +I DEADRILE+GF +E+ +I+
Sbjct: 235 EERLEKGVNLLVATPGRLLDHLQNTKGFITKNLKCLIIDEADRILEVGFEEEMHQII--- 291
Query: 215 GSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLE-TPVLIGLDEKK 266
+V RQ +L SAT KV+ + K+SL +PV +G+D+++
Sbjct: 292 -----------KKVPKT-RQTMLFSATQTRKVDDIAKVSLNNSPVYVGVDDER 332
>UNIPROTKB|F1NEQ3 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:AADN02016926
IPI:IPI00598837 Ensembl:ENSGALT00000019841 Uniprot:F1NEQ3
Length = 659
Score = 388 (141.6 bits), Expect = 2.3e-35, P = 2.3e-35
Identities = 93/237 (39%), Positives = 142/237 (59%)
Query: 32 FASCCFSSL-GLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAY 90
F F+SL GL S + +GF T++Q ++I +L GRD+L A TG+GKT+A+
Sbjct: 161 FEDNSFTSLAGLVSENTLKGISDMGFTHMTEIQHKSIKPLLEGRDILAAAKTGSGKTLAF 220
Query: 91 LAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGN 150
L P + + Y + +GT ++L PT EL + Y +L++L++ G +MGG N
Sbjct: 221 LIPAVELI--YKLKFMPRNGTGVIILSPTRELAMQTYGVLKELMNHHVHTY-GLIMGGSN 277
Query: 151 RSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 210
RS E +L GI+I+VATPG LLDH+++T F++ NL+ ++ DEADRILE+GF +E+++I
Sbjct: 278 RSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEEEMKQI 337
Query: 211 LDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLET-PVLIGLDEKK 266
+ +L R RQ +L SAT KV L KISL+ P+ +G+D+ K
Sbjct: 338 IKLLPKR---------------RQTMLFSATQTRKVEDLAKISLKKEPLYVGVDDNK 379
>UNIPROTKB|D4A824 [details] [associations]
symbol:Ddx18 "Protein Ddx18" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1549712 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
EMBL:AC128353 IPI:IPI00393022 Ensembl:ENSRNOT00000028172
ArrayExpress:D4A824 Uniprot:D4A824
Length = 662
Score = 388 (141.6 bits), Expect = 2.3e-35, P = 2.3e-35
Identities = 95/239 (39%), Positives = 149/239 (62%)
Query: 32 FASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYL 91
FAS S+L ++TL + E +GF+ T++Q ++I +L GRD+L A TG+GKT+A+L
Sbjct: 171 FAS--LSNLVNENTL--KAIEEMGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFL 226
Query: 92 APIINHLQS--YSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL-HRFRWIVPGYVMGG 148
P+I + + PR +GT L+L PT EL + + +L++L+ H G +MGG
Sbjct: 227 IPVIELIVKLKFMPR----NGTGVLILSPTRELAMQTFGVLKELMTHHVHTY--GLIMGG 280
Query: 149 GNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIE 208
NRS E +L GI+I+VATPG LLDH+++T F++ NL+ ++ DEADRIL++GF +E++
Sbjct: 281 SNRSAEVQKLLNGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELK 340
Query: 209 EILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLET-PVLIGLDEKK 266
+I+ +L +R RQ +L SAT KV L +ISL+ P+ +G+D+ K
Sbjct: 341 QIIKLLPAR---------------RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDK 384
>RGD|1549712 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1549712 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AC128353 EMBL:BC083919 IPI:IPI00367078
RefSeq:NP_001006997.1 UniGene:Rn.26598 STRING:Q5XHY0
Ensembl:ENSRNOT00000037203 GeneID:308490 KEGG:rno:308490
UCSC:RGD:1549712 InParanoid:Q5XHY0 NextBio:658990
Genevestigator:Q5XHY0 Uniprot:Q5XHY0
Length = 674
Score = 388 (141.6 bits), Expect = 2.5e-35, P = 2.5e-35
Identities = 95/239 (39%), Positives = 149/239 (62%)
Query: 32 FASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYL 91
FAS S+L ++TL + E +GF+ T++Q ++I +L GRD+L A TG+GKT+A+L
Sbjct: 183 FAS--LSNLVNENTL--KAIEEMGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFL 238
Query: 92 APIINHLQS--YSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL-HRFRWIVPGYVMGG 148
P+I + + PR +GT L+L PT EL + + +L++L+ H G +MGG
Sbjct: 239 IPVIELIVKLKFMPR----NGTGVLILSPTRELAMQTFGVLKELMTHHVHTY--GLIMGG 292
Query: 149 GNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIE 208
NRS E +L GI+I+VATPG LLDH+++T F++ NL+ ++ DEADRIL++GF +E++
Sbjct: 293 SNRSAEVQKLLNGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELK 352
Query: 209 EILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLET-PVLIGLDEKK 266
+I+ +L +R RQ +L SAT KV L +ISL+ P+ +G+D+ K
Sbjct: 353 QIIKLLPAR---------------RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDK 396
>TAIR|locus:2152099 [details] [associations]
symbol:AT5G65900 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
EMBL:AL021684 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 EMBL:AB018108 EMBL:AY059930
EMBL:BT001188 EMBL:AJ012745 IPI:IPI00526354 PIR:T05883 PIR:T51352
RefSeq:NP_201391.1 UniGene:At.19658 UniGene:At.66704
ProteinModelPortal:Q9SB89 SMR:Q9SB89 PaxDb:Q9SB89 PRIDE:Q9SB89
EnsemblPlants:AT5G65900.1 GeneID:836719 KEGG:ath:AT5G65900
GeneFarm:951 TAIR:At5g65900 InParanoid:Q9SB89 OMA:HLENTNG
PhylomeDB:Q9SB89 ProtClustDB:CLSN2916378 Genevestigator:Q9SB89
GermOnline:AT5G65900 Uniprot:Q9SB89
Length = 633
Score = 386 (140.9 bits), Expect = 3.0e-35, P = 3.0e-35
Identities = 92/234 (39%), Positives = 138/234 (58%)
Query: 31 IFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAY 90
I + F SL L ++E +GF T++QA+AIP ++ G DVL A TG+GKT+A+
Sbjct: 150 IMTNKTFESLSLSDNTYKSIKE-MGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAF 208
Query: 91 LAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGN 150
L P + L Y + +GT LV+ PT EL + Y + ++LL ++ G V+GG
Sbjct: 209 LIPAVELL--YRVKFTPRNGTGVLVICPTRELAIQSYGVAKELL-KYHSQTVGKVIGGEK 265
Query: 151 RSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 210
R E L KG+++LVATPG LLDHL++T+ F+ NL++++ DEADRILE F +++++I
Sbjct: 266 RKTEAEILAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKI 325
Query: 211 LDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDE 264
L++L RQ L SAT + KV L ++SL +PV I +DE
Sbjct: 326 LNLLPKT---------------RQTSLFSATQSAKVEDLARVSLTSPVYIDVDE 364
>UNIPROTKB|Q9NVP1 [details] [associations]
symbol:DDX18 "ATP-dependent RNA helicase DDX18"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY EMBL:AK001467 EMBL:BC001238 EMBL:BC003360 EMBL:BC024739
EMBL:X98743 EMBL:CR457060 IPI:IPI00301323 PIR:S71758
RefSeq:NP_006764.3 UniGene:Hs.363492 PDB:3LY5 PDBsum:3LY5
ProteinModelPortal:Q9NVP1 SMR:Q9NVP1 IntAct:Q9NVP1
MINT:MINT-1382348 STRING:Q9NVP1 PhosphoSite:Q9NVP1 DMDM:20532388
SWISS-2DPAGE:Q9NVP1 PaxDb:Q9NVP1 PeptideAtlas:Q9NVP1 PRIDE:Q9NVP1
Ensembl:ENST00000263239 GeneID:8886 KEGG:hsa:8886 UCSC:uc002tlh.1
CTD:8886 GeneCards:GC02P118572 HGNC:HGNC:2741 HPA:HPA035400
MIM:606355 neXtProt:NX_Q9NVP1 PharmGKB:PA27207 HOVERGEN:HBG105702
InParanoid:Q9NVP1 OrthoDB:EOG4894MF PhylomeDB:Q9NVP1
ChEMBL:CHEMBL5060 ChiTaRS:DDX18 EvolutionaryTrace:Q9NVP1
GenomeRNAi:8886 NextBio:33369 ArrayExpress:Q9NVP1 Bgee:Q9NVP1
CleanEx:HS_DDX18 Genevestigator:Q9NVP1 GermOnline:ENSG00000088205
Uniprot:Q9NVP1
Length = 670
Score = 385 (140.6 bits), Expect = 5.2e-35, P = 5.2e-35
Identities = 94/239 (39%), Positives = 148/239 (61%)
Query: 32 FASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYL 91
FAS C +L ++TL ++E +GF T++Q ++I +L GRD+L A TG+GKT+A+L
Sbjct: 179 FASLC--NLVNENTL-KAIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFL 234
Query: 92 APIINHLQS--YSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL-HRFRWIVPGYVMGG 148
P + + + PR +GT L+L PT EL + + +L++L+ H G +MGG
Sbjct: 235 IPAVELIVKLRFMPR----NGTGVLILSPTRELAMQTFGVLKELMTHHVHTY--GLIMGG 288
Query: 149 GNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIE 208
NRS E +L GI+I+VATPG LLDH+++T F++ NL+ ++ DEADRIL++GF +E++
Sbjct: 289 SNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELK 348
Query: 209 EILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLET-PVLIGLDEKK 266
+I+ +L +R RQ +L SAT KV L +ISL+ P+ +G+D+ K
Sbjct: 349 QIIKLLPTR---------------RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDK 392
>UNIPROTKB|E2RFA3 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K13179 OMA:KDGYRSY GeneTree:ENSGT00680000100037
CTD:8886 EMBL:AAEX03011884 RefSeq:XP_533327.3
Ensembl:ENSCAFT00000007958 GeneID:476120 KEGG:cfa:476120
Uniprot:E2RFA3
Length = 669
Score = 384 (140.2 bits), Expect = 6.7e-35, P = 6.7e-35
Identities = 94/238 (39%), Positives = 148/238 (62%)
Query: 32 FASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYL 91
FAS SSL ++TL ++E +GF T++Q ++I +L GRD+L A TG+GKT+A+L
Sbjct: 178 FAS--LSSLVNENTL-KAIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFL 233
Query: 92 APIINHLQS--YSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGG 149
P + + + PR +GT L+L PT EL + + +L++L+ + G +MGG
Sbjct: 234 IPAVELIVKLKFMPR----NGTGVLILSPTRELAMQTFGVLKELM-MYHVHTYGLIMGGS 288
Query: 150 NRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEE 209
NRS E +L GI+I+VATPG LLDH+++T F++ NL+ ++ DEADRIL++GF +E+++
Sbjct: 289 NRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQ 348
Query: 210 ILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLET-PVLIGLDEKK 266
I+ +L +R RQ +L SAT KV L +ISL+ P+ +G+D+ K
Sbjct: 349 IIKLLPTR---------------RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDK 391
>GENEDB_PFALCIPARUM|PFF1500c [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA
helicase, putative" species:5833 "Plasmodium falciparum"
[GO:0016070 "RNA metabolic process" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AL844505 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
RefSeq:XP_966291.1 ProteinModelPortal:C6KTE4
EnsemblProtists:PFF1500c:mRNA GeneID:3885813 KEGG:pfa:PFF1500c
EuPathDB:PlasmoDB:PF3D7_0630900 ProtClustDB:CLSZ2514457
Uniprot:C6KTE4
Length = 601
Score = 381 (139.2 bits), Expect = 7.9e-35, P = 7.9e-35
Identities = 91/233 (39%), Positives = 139/233 (59%)
Query: 37 FSSLGLDS-TLCDQLRE---RLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLA 92
+S L + +CD L++ L F T++QA+ IP LSG+D+L A TG+GKT+A+L
Sbjct: 145 YSELKFEELNICDALKKGLKELNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGKTLAFLV 204
Query: 93 PIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRS 152
P IN L Y+ + +GT L++ PT ELCL +Y++ + L ++ G ++GG +R+
Sbjct: 205 PSINIL--YNIKFLPKNGTGVLIISPTRELCLQIYQVCKDLC-KYIPQTNGIIIGGMSRN 261
Query: 153 KEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 212
+EK + GI+IL+ATPG LLDH+++T F++ NL +I DEADR+L++GF +EI I+
Sbjct: 262 EEKKKFIHGINILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIK 321
Query: 213 ILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265
L KRQ L SAT KV L ++SL+ P+ I + K
Sbjct: 322 RLPK---------------KRQTALFSATQTTKVESLIRLSLQKPIFIEVTTK 359
>UNIPROTKB|C6KTE4 [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA helicase,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 EMBL:AL844505 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_966291.1
ProteinModelPortal:C6KTE4 EnsemblProtists:PFF1500c:mRNA
GeneID:3885813 KEGG:pfa:PFF1500c EuPathDB:PlasmoDB:PF3D7_0630900
ProtClustDB:CLSZ2514457 Uniprot:C6KTE4
Length = 601
Score = 381 (139.2 bits), Expect = 7.9e-35, P = 7.9e-35
Identities = 91/233 (39%), Positives = 139/233 (59%)
Query: 37 FSSLGLDS-TLCDQLRE---RLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLA 92
+S L + +CD L++ L F T++QA+ IP LSG+D+L A TG+GKT+A+L
Sbjct: 145 YSELKFEELNICDALKKGLKELNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGKTLAFLV 204
Query: 93 PIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRS 152
P IN L Y+ + +GT L++ PT ELCL +Y++ + L ++ G ++GG +R+
Sbjct: 205 PSINIL--YNIKFLPKNGTGVLIISPTRELCLQIYQVCKDLC-KYIPQTNGIIIGGMSRN 261
Query: 153 KEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 212
+EK + GI+IL+ATPG LLDH+++T F++ NL +I DEADR+L++GF +EI I+
Sbjct: 262 EEKKKFIHGINILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIK 321
Query: 213 ILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265
L KRQ L SAT KV L ++SL+ P+ I + K
Sbjct: 322 RLPK---------------KRQTALFSATQTTKVESLIRLSLQKPIFIEVTTK 359
>CGD|CAL0003050 [details] [associations]
symbol:HAS1 species:5476 "Candida albicans" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IGI;ISS] [GO:0042274
"ribosomal small subunit biogenesis" evidence=IGI;ISS] [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 GO:GO:0042274
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000012
InterPro:IPR025313 Pfam:PF13959 KO:K13179 EMBL:AACQ01000011
RefSeq:XP_721871.1 RefSeq:XP_722031.1 STRING:Q5AK59 GeneID:3636361
GeneID:3636443 KEGG:cal:CaO19.11444 KEGG:cal:CaO19.3962
Uniprot:Q5AK59
Length = 565
Score = 375 (137.1 bits), Expect = 2.3e-34, P = 2.3e-34
Identities = 78/171 (45%), Positives = 119/171 (69%)
Query: 52 ERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 111
+ +GF TKVQA+ IP +L+GRDVL A TG+GKT+A+L P I L YS +I +GT
Sbjct: 124 KEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELL--YSLKIKPRNGT 181
Query: 112 FALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGH 171
+++ PT EL L ++ + ++L+ +F G V+GG +R +E +L KG+++LVATPG
Sbjct: 182 AVIIITPTRELALQIFGVARELM-QFHSQTCGIVIGGADRRQEATKLAKGVNLLVATPGR 240
Query: 172 LLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASI 222
LLDHLK+T F+ +NL+ ++ DEADRILE+GF E+++I+ +L + N S+
Sbjct: 241 LLDHLKNTQ-FVFSNLKALVIDEADRILEIGFEDEMKQIIKVLPNENRQSM 290
Score = 283 (104.7 bits), Expect = 4.1e-24, P = 4.1e-24
Identities = 66/167 (39%), Positives = 104/167 (62%)
Query: 101 YSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRK 160
YS +I +GT +++ PT EL L ++ + ++L+ +F G V+GG +R +E +L K
Sbjct: 171 YSLKIKPRNGTAVIIITPTRELALQIFGVARELM-QFHSQTCGIVIGGADRRQEATKLAK 229
Query: 161 GISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIA 220
G+++LVATPG LLDHLK+T F+ +NL+ ++ DEADRILE+GF E+++I+ +L + N
Sbjct: 230 GVNLLVATPGRLLDHLKNTQ-FVFSNLKALVIDEADRILEIGFEDEMKQIIKVLPNEN-- 286
Query: 221 SIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLET-PVLIGLDEKK 266
RQ++L SAT KV L +ISL P+ I + +K
Sbjct: 287 ------------RQSMLFSATQTTKVEDLARISLRPGPLYINVVPEK 321
>UNIPROTKB|Q5AK59 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase HAS1"
species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IGI] [GO:0042274 "ribosomal small
subunit biogenesis" evidence=IGI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0042274 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACQ01000012 InterPro:IPR025313 Pfam:PF13959 KO:K13179
EMBL:AACQ01000011 RefSeq:XP_721871.1 RefSeq:XP_722031.1
STRING:Q5AK59 GeneID:3636361 GeneID:3636443 KEGG:cal:CaO19.11444
KEGG:cal:CaO19.3962 Uniprot:Q5AK59
Length = 565
Score = 375 (137.1 bits), Expect = 2.3e-34, P = 2.3e-34
Identities = 78/171 (45%), Positives = 119/171 (69%)
Query: 52 ERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 111
+ +GF TKVQA+ IP +L+GRDVL A TG+GKT+A+L P I L YS +I +GT
Sbjct: 124 KEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELL--YSLKIKPRNGT 181
Query: 112 FALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGH 171
+++ PT EL L ++ + ++L+ +F G V+GG +R +E +L KG+++LVATPG
Sbjct: 182 AVIIITPTRELALQIFGVARELM-QFHSQTCGIVIGGADRRQEATKLAKGVNLLVATPGR 240
Query: 172 LLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASI 222
LLDHLK+T F+ +NL+ ++ DEADRILE+GF E+++I+ +L + N S+
Sbjct: 241 LLDHLKNTQ-FVFSNLKALVIDEADRILEIGFEDEMKQIIKVLPNENRQSM 290
Score = 283 (104.7 bits), Expect = 4.1e-24, P = 4.1e-24
Identities = 66/167 (39%), Positives = 104/167 (62%)
Query: 101 YSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRK 160
YS +I +GT +++ PT EL L ++ + ++L+ +F G V+GG +R +E +L K
Sbjct: 171 YSLKIKPRNGTAVIIITPTRELALQIFGVARELM-QFHSQTCGIVIGGADRRQEATKLAK 229
Query: 161 GISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIA 220
G+++LVATPG LLDHLK+T F+ +NL+ ++ DEADRILE+GF E+++I+ +L + N
Sbjct: 230 GVNLLVATPGRLLDHLKNTQ-FVFSNLKALVIDEADRILEIGFEDEMKQIIKVLPNEN-- 286
Query: 221 SIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLET-PVLIGLDEKK 266
RQ++L SAT KV L +ISL P+ I + +K
Sbjct: 287 ------------RQSMLFSATQTTKVEDLARISLRPGPLYINVVPEK 321
>UNIPROTKB|I3L840 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000025310 Uniprot:I3L840
Length = 667
Score = 378 (138.1 bits), Expect = 3.0e-34, P = 3.0e-34
Identities = 93/241 (38%), Positives = 145/241 (60%)
Query: 32 FASCCFSSLGLDSTLCDQLR--ERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVA 89
F F+SL D + LR + +GF T++Q ++I +L GRD+L A TG+GKT+A
Sbjct: 171 FEDTSFASL-TDLVNENTLRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLA 229
Query: 90 YLAPIINHLQS--YSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL-HRFRWIVPGYVM 146
+L P + + + PR +GT L+L PT EL + + +L++L+ H G +M
Sbjct: 230 FLIPAVELIVKLRFMPR----NGTGVLILSPTRELAMQTFGVLKELMTHHVHTY--GLIM 283
Query: 147 GGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 206
GG NRS E +L GI+I+VATPG LLDH+++T F++ NL+ ++ DEADRIL++GF +E
Sbjct: 284 GGSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEE 343
Query: 207 IEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLET-PVLIGLDEK 265
+++I+ +L +R RQ +L SAT KV L +ISL+ P+ +G+D+
Sbjct: 344 LKQIIKLLPTR---------------RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDD 388
Query: 266 K 266
K
Sbjct: 389 K 389
>UNIPROTKB|F1RY13 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000017112 Uniprot:F1RY13
Length = 671
Score = 378 (138.1 bits), Expect = 3.1e-34, P = 3.1e-34
Identities = 93/241 (38%), Positives = 145/241 (60%)
Query: 32 FASCCFSSLGLDSTLCDQLR--ERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVA 89
F F+SL D + LR + +GF T++Q ++I +L GRD+L A TG+GKT+A
Sbjct: 175 FEDTSFASL-TDLVNENTLRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLA 233
Query: 90 YLAPIINHLQS--YSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL-HRFRWIVPGYVM 146
+L P + + + PR +GT L+L PT EL + + +L++L+ H G +M
Sbjct: 234 FLIPAVELIVKLRFMPR----NGTGVLILSPTRELAMQTFGVLKELMTHHVHTY--GLIM 287
Query: 147 GGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 206
GG NRS E +L GI+I+VATPG LLDH+++T F++ NL+ ++ DEADRIL++GF +E
Sbjct: 288 GGSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEE 347
Query: 207 IEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLET-PVLIGLDEK 265
+++I+ +L +R RQ +L SAT KV L +ISL+ P+ +G+D+
Sbjct: 348 LKQIIKLLPTR---------------RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDD 392
Query: 266 K 266
K
Sbjct: 393 K 393
>UNIPROTKB|I3L7B7 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000025125 Uniprot:I3L7B7
Length = 696
Score = 378 (138.1 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 93/241 (38%), Positives = 145/241 (60%)
Query: 32 FASCCFSSLGLDSTLCDQLR--ERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVA 89
F F+SL D + LR + +GF T++Q ++I +L GRD+L A TG+GKT+A
Sbjct: 200 FEDTSFASL-TDLVNENTLRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLA 258
Query: 90 YLAPIINHLQS--YSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL-HRFRWIVPGYVM 146
+L P + + + PR +GT L+L PT EL + + +L++L+ H G +M
Sbjct: 259 FLIPAVELIVKLRFMPR----NGTGVLILSPTRELAMQTFGVLKELMTHHVHTY--GLIM 312
Query: 147 GGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 206
GG NRS E +L GI+I+VATPG LLDH+++T F++ NL+ ++ DEADRIL++GF +E
Sbjct: 313 GGSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEE 372
Query: 207 IEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLET-PVLIGLDEK 265
+++I+ +L +R RQ +L SAT KV L +ISL+ P+ +G+D+
Sbjct: 373 LKQIIKLLPTR---------------RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDD 417
Query: 266 K 266
K
Sbjct: 418 K 418
>UNIPROTKB|F1N533 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:DAAA02005160 IPI:IPI00904747
Ensembl:ENSBTAT00000045489 OMA:TENKGES Uniprot:F1N533
Length = 670
Score = 376 (137.4 bits), Expect = 5.1e-34, P = 5.1e-34
Identities = 91/241 (37%), Positives = 144/241 (59%)
Query: 32 FASCCFSSLG--LDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVA 89
F F SL ++ ++E +GF T++Q ++I +L GRD+L A TG+GKT+A
Sbjct: 174 FEDTSFDSLTNLVNENTLKAIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLA 232
Query: 90 YLAPIINHLQS--YSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL-HRFRWIVPGYVM 146
+L P + + + PR +GT L+L PT EL + + +L++L+ H G +M
Sbjct: 233 FLIPAVELIVKLKFMPR----NGTGVLILSPTRELAMQTFGVLKELMTHHVHTY--GLIM 286
Query: 147 GGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 206
GG NRS E +L GI+I+VATPG LLDH+++T F++ NL+ ++ DEADRIL++GF +E
Sbjct: 287 GGSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEE 346
Query: 207 IEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLET-PVLIGLDEK 265
+++I+ +L +R RQ +L SAT KV L +ISL+ P+ +G+D+
Sbjct: 347 LKQIIKLLPTR---------------RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDD 391
Query: 266 K 266
K
Sbjct: 392 K 392
>UNIPROTKB|F1MSX0 [details] [associations]
symbol:F1MSX0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:DAAA02009745
IPI:IPI00903923 Ensembl:ENSBTAT00000039166 Uniprot:F1MSX0
Length = 674
Score = 376 (137.4 bits), Expect = 5.2e-34, P = 5.2e-34
Identities = 91/241 (37%), Positives = 144/241 (59%)
Query: 32 FASCCFSSLG--LDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVA 89
F F SL ++ ++E +GF T++Q ++I +L GRD+L A TG+GKT+A
Sbjct: 178 FEDTSFDSLTNLVNENTLKAIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLA 236
Query: 90 YLAPIINHLQS--YSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL-HRFRWIVPGYVM 146
+L P + + + PR +GT L+L PT EL + + +L++L+ H G +M
Sbjct: 237 FLIPAVELIVKLKFMPR----NGTGVLILSPTRELAMQTFGVLKELMTHHVHTY--GLIM 290
Query: 147 GGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 206
GG NRS E +L GI+I+VATPG LLDH+++T F++ NL+ ++ DEADRIL++GF +E
Sbjct: 291 GGSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEE 350
Query: 207 IEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLET-PVLIGLDEK 265
+++I+ +L +R RQ +L SAT KV L +ISL+ P+ +G+D+
Sbjct: 351 LKQIIKLLPTR---------------RQTMLFSATQTRKVEDLARISLKKEPLYVGVDDD 395
Query: 266 K 266
K
Sbjct: 396 K 396
>FB|FBgn0025140 [details] [associations]
symbol:pit "pitchoune" species:7227 "Drosophila melanogaster"
[GO:0005730 "nucleolus" evidence=NAS;IDA] [GO:0016049 "cell growth"
evidence=IMP] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K13179 OMA:KDGYRSY EMBL:U84552 EMBL:AY071402
EMBL:AY119620 RefSeq:NP_524446.3 RefSeq:NP_732694.2
UniGene:Dm.33428 ProteinModelPortal:Q9VD51 SMR:Q9VD51
DIP:DIP-19700N MINT:MINT-1004790 STRING:Q9VD51 PaxDb:Q9VD51
EnsemblMetazoa:FBtr0084174 EnsemblMetazoa:FBtr0084175 GeneID:42595
KEGG:dme:Dmel_CG6375 UCSC:CG6375-RA CTD:42595 FlyBase:FBgn0025140
GeneTree:ENSGT00680000100037 InParanoid:Q9VD51 OrthoDB:EOG4H189W
PhylomeDB:Q9VD51 ChiTaRS:pit GenomeRNAi:42595 NextBio:829597
Bgee:Q9VD51 GermOnline:CG6375 Uniprot:Q9VD51
Length = 680
Score = 368 (134.6 bits), Expect = 4.0e-33, P = 4.0e-33
Identities = 88/235 (37%), Positives = 146/235 (62%)
Query: 37 FSSL-GLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAP-- 93
F+SL G S + + +GF T++Q++++ +L GRD++ A TG+GKT+A+L P
Sbjct: 187 FASLKGAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAV 246
Query: 94 -IINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRS 152
+IN L+ + PR +GT +++ PT EL + + +L++L+ G VMGG NR
Sbjct: 247 ELINKLR-FMPR----NGTGVIIISPTRELSMQTFGVLKELMAHHHHTY-GLVMGGSNRQ 300
Query: 153 KEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 212
E +L KGI+ILVATPG LLDHL+++ FL+ NL+ +I DE DRILE+GF +E+++I++
Sbjct: 301 VESEKLGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIIN 360
Query: 213 ILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLET-PVLIGLDEKK 266
+L R RQ +L SAT ++ L+K++L++ P+ +G+ + +
Sbjct: 361 LLPKR---------------RQTMLFSATQTARIEALSKLALKSEPIYVGVHDNQ 400
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 365 (133.5 bits), Expect = 5.5e-33, P = 5.5e-33
Identities = 87/230 (37%), Positives = 133/230 (57%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F +L L + + E L F PT +Q+ +IP+ L G+D++ A TG+GKT AY+ PII
Sbjct: 132 FQTLQLSRPVLKGIAE-LKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIE 190
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L Y P S+ T ++L PT EL L VYE +KL H + G +GG N +++
Sbjct: 191 RLL-YKP----STSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEE 245
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216
+L+ I++ATPG L+DH++++ SF +++ ++ DEADR+LE GF E+ EIL ++
Sbjct: 246 QLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPK 305
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKK 266
KRQ LL SAT+N ++ L ++SL+ PV I +D K
Sbjct: 306 H--------------KRQTLLFSATMNTRIQDLIQLSLQKPVRIMIDPPK 341
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 365 (133.5 bits), Expect = 5.5e-33, P = 5.5e-33
Identities = 87/230 (37%), Positives = 133/230 (57%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F +L L + + E L F PT +Q+ +IP+ L G+D++ A TG+GKT AY+ PII
Sbjct: 132 FQTLQLSRPVLKGIAE-LKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIE 190
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L Y P S+ T ++L PT EL L VYE +KL H + G +GG N +++
Sbjct: 191 RLL-YKP----STSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEE 245
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216
+L+ I++ATPG L+DH++++ SF +++ ++ DEADR+LE GF E+ EIL ++
Sbjct: 246 QLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPK 305
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKK 266
KRQ LL SAT+N ++ L ++SL+ PV I +D K
Sbjct: 306 H--------------KRQTLLFSATMNTRIQDLIQLSLQKPVRIMIDPPK 341
>TAIR|locus:2086909 [details] [associations]
symbol:AT3G18600 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
[GO:0001510 "RNA methylation" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0034968
"histone lysine methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AP001303 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY EMBL:AY070052 EMBL:AY096431 IPI:IPI00544206
RefSeq:NP_188490.1 UniGene:At.28418 ProteinModelPortal:Q9LIH9
SMR:Q9LIH9 STRING:Q9LIH9 PaxDb:Q9LIH9 PRIDE:Q9LIH9 DNASU:821391
EnsemblPlants:AT3G18600.1 GeneID:821391 KEGG:ath:AT3G18600
GeneFarm:1030 TAIR:At3g18600 InParanoid:Q9LIH9 PhylomeDB:Q9LIH9
ProtClustDB:CLSN2914752 Genevestigator:Q9LIH9 GermOnline:AT3G18600
Uniprot:Q9LIH9
Length = 568
Score = 360 (131.8 bits), Expect = 1.3e-32, P = 1.3e-32
Identities = 88/238 (36%), Positives = 136/238 (57%)
Query: 29 KEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTV 88
K I + F SL L ++E +GF+ T++QA +I +L G+DVL A TG+GKT+
Sbjct: 83 KGIMTNVTFDSLDLSEQTSIAIKE-MGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTL 141
Query: 89 AYLAPIINHL--QSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVM 146
A+L P + L + +SPR +GT +V+ PT EL + + ++LL V V+
Sbjct: 142 AFLIPAVELLFKERFSPR----NGTGVIVICPTRELAIQTKNVAEELLKHHSQTV-SMVI 196
Query: 147 GGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 206
GG NR E R+ G ++++ATPG LLDHL++T +F++ +L+ ++ DEADRILE F ++
Sbjct: 197 GGNNRRSEAQRIASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEED 256
Query: 207 IEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDE 264
+ +IL IL RQ L SAT KV L ++SL +PV + +D+
Sbjct: 257 MNKILKILPKT---------------RQTALFSATQTSKVKDLARVSLTSPVHVDVDD 299
>SGD|S000003931 [details] [associations]
symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
assembly and function" species:4932 "Saccharomyces cerevisiae"
[GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
Length = 752
Score = 351 (128.6 bits), Expect = 3.9e-31, P = 3.9e-31
Identities = 86/251 (34%), Positives = 139/251 (55%)
Query: 26 ETVKEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTG 85
E K+++ + F+SL L + L LG+ P+ +Q+ IP+ L G+D++ A TG+G
Sbjct: 224 EAKKQMYEN--FNSLSLSRPVLKGLAS-LGYVKPSPIQSATIPIALLGKDIIAGAVTGSG 280
Query: 86 KTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYV 145
KT A++ PII L Y P + + T +VL+PT EL + V ++ +++ I G
Sbjct: 281 KTAAFMIPIIERLL-YKPA--KIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLA 337
Query: 146 MGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGK 205
+GG N +++ L+ I++ATPG +DH+++++SF ++ ++ DEADR+LE GF
Sbjct: 338 VGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQD 397
Query: 206 EIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265
E+ EI+ +L S RQNLL SAT+N K+ L +SL+ PV I +D
Sbjct: 398 ELNEIMGLLPSN---------------RQNLLFSATMNSKIKSLVSLSLKKPVRIMIDPP 442
Query: 266 KFPEDKSNVHF 276
K K F
Sbjct: 443 KKAATKLTQEF 453
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 315 (115.9 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 82/232 (35%), Positives = 128/232 (55%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
FSS LDSTL + E ++ PT++Q Q+IP+IL+ DV+ A TGTGKT A+ PI+
Sbjct: 7 FSSFSLDSTLLKAITES-AYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQ 65
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLH--RFRWIVPGYVMGGGNRSKE 154
L S P ALVL PT EL V++ H +F + G GG + K+
Sbjct: 66 QLISVQPCKPELR---ALVLTPTRELAQQVHK---SFCHYGQFTDVTIGIAYGGVSTKKQ 119
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214
+ L+ G+ IL+ATPG LLD L+ T S +N+ ++FDEADR+L++GF +EI++I L
Sbjct: 120 ISELKVGVDILIATPGRLLDLLR-TESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYL 178
Query: 215 GSRNIASIGEGNEVSNVKR--QNLLLSATLNEKVNHLTKISLETPVLI-GLD 263
+ ++ + +N+L+ + E ++ K + + L+ G+D
Sbjct: 179 PKTKQTLLFSATFADDIYKMSKNILVEPKMVE-IDEKNKAADDVEQLVYGVD 229
Score = 194 (73.4 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 53/166 (31%), Positives = 90/166 (54%)
Query: 125 LVYEILQKLLH--RFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSF 182
L ++ + H +F + G GG + K+ + L+ G+ IL+ATPG LLD L+ T S
Sbjct: 88 LAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGVDILIATPGRLLDLLR-TESV 146
Query: 183 LHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATL 242
+N+ ++FDEADR+L++GF +EI++I L +Q LL SAT
Sbjct: 147 SLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKT---------------KQTLLFSATF 191
Query: 243 NEKVNHLTKISLETPVLIGLDEK-KFPEDKSNVHFGSLESDVKEEV 287
+ + ++K L P ++ +DEK K +D + +G +++D K E+
Sbjct: 192 ADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYG-VDADRKREL 236
Score = 38 (18.4 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 263 DEKKFPEDKSNVHFGSLESDVKEEVEHPNT 292
+ K P +K N +L + K + PNT
Sbjct: 386 NSNKRPINKKNARKDALSAGDKSKGHRPNT 415
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 315 (115.9 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 82/232 (35%), Positives = 128/232 (55%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
FSS LDSTL + E ++ PT++Q Q+IP+IL+ DV+ A TGTGKT A+ PI+
Sbjct: 7 FSSFSLDSTLLKAITES-AYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQ 65
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLH--RFRWIVPGYVMGGGNRSKE 154
L S P ALVL PT EL V++ H +F + G GG + K+
Sbjct: 66 QLISVQPCKPELR---ALVLTPTRELAQQVHK---SFCHYGQFTDVTIGIAYGGVSTKKQ 119
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214
+ L+ G+ IL+ATPG LLD L+ T S +N+ ++FDEADR+L++GF +EI++I L
Sbjct: 120 ISELKVGVDILIATPGRLLDLLR-TESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYL 178
Query: 215 GSRNIASIGEGNEVSNVKR--QNLLLSATLNEKVNHLTKISLETPVLI-GLD 263
+ ++ + +N+L+ + E ++ K + + L+ G+D
Sbjct: 179 PKTKQTLLFSATFADDIYKMSKNILVEPKMVE-IDEKNKAADDVEQLVYGVD 229
Score = 194 (73.4 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 53/166 (31%), Positives = 90/166 (54%)
Query: 125 LVYEILQKLLH--RFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSF 182
L ++ + H +F + G GG + K+ + L+ G+ IL+ATPG LLD L+ T S
Sbjct: 88 LAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGVDILIATPGRLLDLLR-TESV 146
Query: 183 LHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATL 242
+N+ ++FDEADR+L++GF +EI++I L +Q LL SAT
Sbjct: 147 SLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKT---------------KQTLLFSATF 191
Query: 243 NEKVNHLTKISLETPVLIGLDEK-KFPEDKSNVHFGSLESDVKEEV 287
+ + ++K L P ++ +DEK K +D + +G +++D K E+
Sbjct: 192 ADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYG-VDADRKREL 236
Score = 38 (18.4 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 263 DEKKFPEDKSNVHFGSLESDVKEEVEHPNT 292
+ K P +K N +L + K + PNT
Sbjct: 386 NSNKRPINKKNARKDALSAGDKSKGHRPNT 415
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 87/231 (37%), Positives = 129/231 (55%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F LG+ LC+ E+LGF+ PT +Q +AIPV+L+ RDV+ A TG+GKT A+ P+I
Sbjct: 48 FKELGVIDELCEAC-EKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQ 106
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRF--RWIVPGYVMGGGNRSKE 154
L + +P S FA+VL PT EL + E + + R +V ++GG + +
Sbjct: 107 ELWN-NP-----SPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVV---IVGGMDMVTQ 157
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214
L K +LV TPG L+DHL++T F NL+++I DEADR+L++ FG I++IL I+
Sbjct: 158 AVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKII 217
Query: 215 GSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265
+R+ LL SAT+ KV L + SL PV + + K
Sbjct: 218 PH---------------ERRTLLFSATMTSKVEKLQRASLHQPVRVAVSSK 253
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 86/260 (33%), Positives = 138/260 (53%)
Query: 26 ETVKEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTG 85
+T E+ + F LG+ LC+ ++LG+ PTK+Q +AIP+ L GRD++ A TG+G
Sbjct: 17 QTAVEVEETKTFKDLGVTDVLCEAC-DQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSG 75
Query: 86 KTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYV 145
KT A+ PI+N L R+ FALVL PT EL + E + L + +
Sbjct: 76 KTGAFALPILNALLETPQRL------FALVLTPTRELAFQISEQFEALGSSIG-VQCAVI 128
Query: 146 MGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGK 205
+GG + + L K I++ATPG L+DHL++T F L++++ DEADRIL + F
Sbjct: 129 VGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFET 188
Query: 206 EIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265
E+++IL ++ R+ R+ L SAT+ +KV L + +L+ PV + K
Sbjct: 189 EVDKILKVI-PRD--------------RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSK 233
Query: 266 KFPEDKSNVHFGSLESDVKE 285
+K ++ + S K+
Sbjct: 234 YQTVEKLQQYYLFIPSKFKD 253
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 84/249 (33%), Positives = 133/249 (53%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F LG+ LC+ ++LG+ PTK+Q +AIP+ L GRD++ A TG+GKT A+ PI+N
Sbjct: 26 FKDLGVTDVLCEAC-DQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L R+ FALVL PT EL + E + L + ++GG + +
Sbjct: 85 ALLETPQRL------FALVLTPTRELAFQISEQFEALGSSIG-VQSAVIVGGIDSMSQSL 137
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216
L K I++ATPG L+DHL++T F L++++ DEADRIL + F E+++IL ++
Sbjct: 138 ALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI-P 196
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKSNVHF 276
R+ R+ L SAT+ +KV L + +L+ PV + K +K ++
Sbjct: 197 RD--------------RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYY 242
Query: 277 GSLESDVKE 285
+ S K+
Sbjct: 243 IFIPSKFKD 251
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 83/229 (36%), Positives = 125/229 (54%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F LG+ LC+ E +G++APT +Q+QAIP+ L GRDV+ A TG+GKT A+ P++
Sbjct: 48 FKELGIIDQLCEAC-ENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQ 106
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L +P+ F LVL PT EL + + + L + ++GG + +
Sbjct: 107 ALME-APQT-----LFGLVLAPTRELAYQISQAFETLGSTIG-VRCAVIVGGMDMVAQSI 159
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216
L K I+VATPG LLDHL++T F NL+++ DEADR+L++ FG+ +++I+ IL
Sbjct: 160 ALGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRIL-P 218
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265
R R L SAT++ KV L + SL PV + + K
Sbjct: 219 RT--------------RHTYLFSATMSTKVESLQRASLSNPVRVSVSSK 253
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 87/226 (38%), Positives = 124/226 (54%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F LGL + L +RE+ G+ PT VQ QAIPVIL RDV+V A TGTGKT + P++
Sbjct: 12 FEVLGLSAELLRAIREQ-GYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70
Query: 97 HLQSYSPRIDRSSGTF--ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKE 154
L P + RS+ AL+L PT EL + V+E + + ++ + V GG + +
Sbjct: 71 RLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECV-RAYGKYLPLKATVVHGGVSIKPQ 129
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214
LR+G+ ILVATPG LLD L + + + + + DEADR+L++GF +I IL +L
Sbjct: 130 INHLRRGVDILVATPGRLLD-LVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLL 188
Query: 215 GSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
RQNLL SAT ++++ LT L +P LI
Sbjct: 189 PE---------------SRQNLLFSATFSKEIKELTDKLLHSPALI 219
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 87/226 (38%), Positives = 124/226 (54%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F LGL + L +RE+ G+ PT VQ QAIPVIL RDV+V A TGTGKT + P++
Sbjct: 12 FEVLGLSAELLRAIREQ-GYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70
Query: 97 HLQSYSPRIDRSSGTF--ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKE 154
L P + RS+ AL+L PT EL + V+E + + ++ + V GG + +
Sbjct: 71 RLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECV-RAYGKYLPLKATVVHGGVSIKPQ 129
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214
LR+G+ ILVATPG LLD L + + + + + DEADR+L++GF +I IL +L
Sbjct: 130 INHLRRGVDILVATPGRLLD-LVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLL 188
Query: 215 GSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
RQNLL SAT ++++ LT L +P LI
Sbjct: 189 PE---------------SRQNLLFSATFSKEIKELTDKLLHSPALI 219
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 327 (120.2 bits), Expect = 1.9e-29, P = 1.9e-29
Identities = 84/249 (33%), Positives = 133/249 (53%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F LG+ LC+ ++LG+ PTK+Q +AIP+ L GRD++ A TG+GKT A+ PI+N
Sbjct: 52 FKDLGVTDVLCEAC-DQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 110
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L R+ FALVL PT EL + E + L + ++GG + +
Sbjct: 111 ALLETPQRL------FALVLTPTRELAFQISEQFEALGSSIG-VQSAVIVGGIDSMSQSL 163
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216
L K I++ATPG L+DHL++T F L++++ DEADRIL + F E+++IL ++
Sbjct: 164 ALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI-P 222
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKSNVHF 276
R+ R+ L SAT+ +KV L + +L+ PV + K +K ++
Sbjct: 223 RD--------------RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYY 268
Query: 277 GSLESDVKE 285
+ S K+
Sbjct: 269 LFIPSKFKD 277
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 86/260 (33%), Positives = 137/260 (52%)
Query: 26 ETVKEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTG 85
+T E + F LG+ LC+ ++LG+ PTK+Q +AIP+ L GRD++ A TG+G
Sbjct: 15 QTAAEEEETKTFKDLGVTDVLCEAC-DQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSG 73
Query: 86 KTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYV 145
KT A+ PI+N L R+ FALVL PT EL + E + L + +
Sbjct: 74 KTGAFALPILNALLETPQRL------FALVLTPTRELAFQISEQFEALGSSIG-VQCAVI 126
Query: 146 MGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGK 205
+GG + + L K I++ATPG L+DHL++T F L++++ DEADRIL + F
Sbjct: 127 VGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFET 186
Query: 206 EIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265
E+++IL ++ R+ R+ L SAT+ +KV L + +L+ PV + K
Sbjct: 187 EVDKILKVI-PRD--------------RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSK 231
Query: 266 KFPEDKSNVHFGSLESDVKE 285
+K ++ + S K+
Sbjct: 232 YQTVEKLQQYYLFIPSKFKD 251
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 86/260 (33%), Positives = 137/260 (52%)
Query: 26 ETVKEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTG 85
+T E + F LG+ LC+ ++LG+ PTK+Q +AIP+ L GRD++ A TG+G
Sbjct: 15 QTAAEEEETKTFKDLGVTDVLCEAC-DQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSG 73
Query: 86 KTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYV 145
KT A+ PI+N L R+ FALVL PT EL + E + L + +
Sbjct: 74 KTGAFALPILNALLETPQRL------FALVLTPTRELAFQISEQFEALGSSIG-VQCAVI 126
Query: 146 MGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGK 205
+GG + + L K I++ATPG L+DHL++T F L++++ DEADRIL + F
Sbjct: 127 VGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFET 186
Query: 206 EIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265
E+++IL ++ R+ R+ L SAT+ +KV L + +L+ PV + K
Sbjct: 187 EVDKILKVI-PRD--------------RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSK 231
Query: 266 KFPEDKSNVHFGSLESDVKE 285
+K ++ + S K+
Sbjct: 232 YQTVEKLQQYYLFIPSKFKD 251
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 85/260 (32%), Positives = 137/260 (52%)
Query: 26 ETVKEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTG 85
E V + + F LG+ LC+ ++LG++ PTK+Q +AIPV L GRD++ A TG+G
Sbjct: 16 EEVPVVEEARSFKDLGVTDVLCEAC-DQLGWKVPTKIQVEAIPVALQGRDIIGLAETGSG 74
Query: 86 KTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYV 145
KT A+ PI+ L +D FALVL PT EL + E + L + +
Sbjct: 75 KTGAFALPILQAL------LDAPQRLFALVLTPTRELAFQISEQFEALGSSIG-VHSAVI 127
Query: 146 MGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGK 205
+GG + + L K I++ATPG L+DHL++T F L++++ DEADRIL + F
Sbjct: 128 VGGIDSMSQSLALAKKPHIIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFET 187
Query: 206 EIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265
E+++IL ++ R+ R+ L SAT+ ++V L + +L+ PV + K
Sbjct: 188 EVDKILKVI-PRD--------------RKTFLFSATMTKQVQKLQRAALKNPVKCAVSSK 232
Query: 266 KFPEDKSNVHFGSLESDVKE 285
+K ++ + S K+
Sbjct: 233 YQTVEKLQQYYIFIPSKFKD 252
>UNIPROTKB|I3L976 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
Length = 456
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 84/249 (33%), Positives = 133/249 (53%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F LG+ LC+ ++LG+ PTK+Q +AIP+ L GRD++ A TG+GKT A+ PI+N
Sbjct: 25 FKDLGVTDVLCEAC-DQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 83
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L R+ FALVL PT EL + E + L + ++GG + +
Sbjct: 84 ALLETPQRL------FALVLTPTRELAFQISEQFEALGSSIG-VQCAVIVGGIDSMSQSL 136
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216
L K I++ATPG L+DHL++T F L++++ DEADRIL + F E+++IL ++
Sbjct: 137 ALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI-P 195
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKSNVHF 276
R+ R+ L SAT+ +KV L + +L+ PV + K +K ++
Sbjct: 196 RD--------------RKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYY 241
Query: 277 GSLESDVKE 285
+ S K+
Sbjct: 242 LFIPSKFKD 250
>FB|FBgn0021995 [details] [associations]
symbol:Rs1 "Rs1" species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0042254
"ribosome biogenesis" evidence=NAS] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE013599 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0016779 HSSP:P10081 GeneTree:ENSGT00550000074997 KO:K13181
CTD:6247 EMBL:BT004908 RefSeq:NP_651970.1 UniGene:Dm.11481
SMR:Q7JQN4 STRING:Q7JQN4 EnsemblMetazoa:FBtr0088788 GeneID:44087
KEGG:dme:Dmel_CG2173 UCSC:CG2173-RA FlyBase:FBgn0021995
InParanoid:Q7JQN4 OMA:EHYIHRV OrthoDB:EOG42NGFQ GenomeRNAi:44087
NextBio:836725 Uniprot:Q7JQN4
Length = 782
Score = 334 (122.6 bits), Expect = 2.9e-29, P = 2.9e-29
Identities = 82/207 (39%), Positives = 123/207 (59%)
Query: 54 LGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 113
LG+ PT +QA IPV L GRD+ AATGTGKT AY+ P + L Y P ++ + T
Sbjct: 175 LGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLL-YRP-LNNKAITRV 232
Query: 114 LVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLL 173
LVLVPT EL VY++ ++L +F I G +GG + ++A LR+ I++ATPG L+
Sbjct: 233 LVLVPTRELGAQVYQVTKQLC-QFTTIDVGLAIGGLDVKAQEAVLRQNPDIVIATPGRLI 291
Query: 174 DHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKR 233
DH+K+T SF ++ +I DEADR+L+ F ++++EI+ N R
Sbjct: 292 DHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEII--------------NSCCKT-R 336
Query: 234 QNLLLSATLNEKVNHLTKISLETPVLI 260
Q +L SAT++E+V L +SL+ P+ +
Sbjct: 337 QTMLFSATMSEQVKDLAAVSLDKPIKV 363
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 333 (122.3 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 80/230 (34%), Positives = 127/230 (55%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F S+ L + L LGFE PT++Q + IP+ L G+D++ A TG+GKT A++ PI+
Sbjct: 261 FQSMNLSRPILKGL-SNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L Y P+ + T L+L PT EL + + + K+ F I+ +GG + ++
Sbjct: 320 RLL-YRPK--KVPTTRVLILCPTRELAMQCHSVATKIAS-FTDIMVCLCIGGLSLKLQEQ 375
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216
LRK I++ATPG +DH++++ F N+ ++ DEADR+LE GF E+ EI+
Sbjct: 376 ELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEII----- 430
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKK 266
+ RQ +L SAT+ +KV+ L ++SL PV + +D KK
Sbjct: 431 ----------QACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKK 470
>WB|WBGene00022148 [details] [associations]
symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
Length = 739
Score = 332 (121.9 bits), Expect = 4.2e-29, P = 4.2e-29
Identities = 80/210 (38%), Positives = 125/210 (59%)
Query: 55 GFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 114
G+ PT +Q IPV L+G+D+ AATGTGKT A++ PI+ + Y P+ +S T L
Sbjct: 167 GYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILERM-IYRPK--GASCTRVL 223
Query: 115 VLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLD 174
VLVPT EL + V+++ +KL F + GG + ++A LR G ++VATPG L+D
Sbjct: 224 VLVPTRELAIQVFQVFRKL-STFIQLEVCLCAGGLDLKAQEAALRSGPDVVVATPGRLID 282
Query: 175 HLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQ 234
HL ++ SF +N+ ++ DEADR+LE F ++ E++ + ++N RQ
Sbjct: 283 HLHNSPSFNLSNIEVLVLDEADRMLEEAFRDQMNELIRLC-AQN--------------RQ 327
Query: 235 NLLLSATLNEKVNHLTKISLETPVLIGLDE 264
LL SAT+ E+++ L +SL+ PV I ++E
Sbjct: 328 TLLFSATMTEEIDELASMSLQKPVKIFINE 357
>UNIPROTKB|A4RGU2 [details] [associations]
symbol:DBP4 "ATP-dependent RNA helicase DBP4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 GO:GO:0043581 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM001232 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 OrthoDB:EOG4R53B0
RefSeq:XP_003715000.1 ProteinModelPortal:A4RGU2 STRING:A4RGU2
EnsemblFungi:MGG_08049T0 GeneID:2678339 KEGG:mgr:MGG_08049
Uniprot:A4RGU2
Length = 798
Score = 318 (117.0 bits), Expect = 5.5e-29, Sum P(2) = 5.5e-29
Identities = 80/226 (35%), Positives = 129/226 (57%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+ L L +R+ FE T +QA+AIP+ L GRD+L A TG+GKT+A+L P++
Sbjct: 51 FAELPLSEPTAKGVRDS-HFETLTDIQARAIPLALKGRDILGAAKTGSGKTLAFLVPLLE 109
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L Y + + + ALVL PT EL + +++L+K+ R G V+GG + +E+A
Sbjct: 110 KL--YREQWTQEAKLGALVLSPTRELAVQTFQVLRKI-GRHHLFSAGLVIGGKS-VREEA 165
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216
++IL+ TPG +L HL T F NL+ ++ DEADRI++LGF ++++ ++ L +
Sbjct: 166 EALSRMNILIGTPGRILQHLDQTHGFDVDNLQLLVLDEADRIMDLGFQRDVDALVQHLPT 225
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGL 262
RQ LL SAT ++KV+ L ++SL+ P + +
Sbjct: 226 T---------------RQTLLFSATQSKKVSDLARLSLKDPEYVSV 256
Score = 39 (18.8 bits), Expect = 5.5e-29, Sum P(2) = 5.5e-29
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 282 DVKEEVEHPNTTLSSSTED 300
DVK P LSS +ED
Sbjct: 507 DVKRMKNAPRAPLSSGSED 525
>TAIR|locus:2010306 [details] [associations]
symbol:EMB1586 "embryo defective 1586" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009663 "plasmodesma organization"
evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0010497
"plasmodesmata-mediated intercellular transport" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524 GO:GO:0003723
EMBL:AC012187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0010497 EMBL:AC025417 EMBL:AY062618 EMBL:AY114691
EMBL:AK175587 EMBL:AK175711 EMBL:AK175751 EMBL:AK175793
EMBL:AK176044 EMBL:AK176194 EMBL:AK226229 EMBL:AK229878
EMBL:AK230085 IPI:IPI00521991 PIR:H86260 RefSeq:NP_172737.2
UniGene:At.47876 ProteinModelPortal:Q8W4E1 SMR:Q8W4E1 PaxDb:Q8W4E1
PRIDE:Q8W4E1 EnsemblPlants:AT1G12770.1 GeneID:837833
KEGG:ath:AT1G12770 GeneFarm:1026 TAIR:At1g12770
HOGENOM:HOG000239285 InParanoid:Q8W4E1 OMA:IRVSNFV PhylomeDB:Q8W4E1
ProtClustDB:CLSN2681499 Genevestigator:Q8W4E1 GO:GO:0009663
Uniprot:Q8W4E1
Length = 551
Score = 325 (119.5 bits), Expect = 8.8e-29, P = 8.8e-29
Identities = 93/283 (32%), Positives = 150/283 (53%)
Query: 26 ETVKEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTG 85
E V +F++ F LGL +L D L ER GF PT VQ+ A+P I+ G D ++ + TG+G
Sbjct: 101 EIVSPLFSAKSFEELGLPDSLLDSL-EREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSG 159
Query: 86 KTVAYLAPIINHL-------QSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFR 138
KT+AYL PI++ + +S D+ + A+++ P+ EL + + ++KLL
Sbjct: 160 KTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVH 219
Query: 139 WIVPGYVMGGGNRSKEKARLRKGI-SILVATPGHLLDHLKHTSSFLHTN-LRWIIFDEAD 196
+ ++GG NR +++ L+K +I+V TPG + + K LHT+ R+++ DE D
Sbjct: 220 RRMVQQLVGGANRMRQEEALKKNKPAIVVGTPGRIAEISK--GGKLHTHGCRFLVLDEVD 277
Query: 197 RILELGFGKEIEEILDILGSRNIASI-GEGNEVSNVKRQNLLLSATLNEKVNHLTKISLE 255
+L F ++I IL+ +G R+ A GE +E +N RQ +L+SAT+ V K
Sbjct: 278 ELLSFNFREDIHRILEHVGKRSGAGPKGEVDERAN--RQTILVSATVPFSVIRAAKSWSH 335
Query: 256 TPVLIGLDEKKFPED--KSNVHFGSLESDVKEEVEHPNTTLSS 296
PVL+ + K P D + + SL E TT+ S
Sbjct: 336 EPVLVQAN-KVTPLDTVQPSAPVMSLTPTTSEADGQIQTTIQS 377
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 329 (120.9 bits), Expect = 1.0e-28, P = 1.0e-28
Identities = 84/224 (37%), Positives = 128/224 (57%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F + L L + +GF+ PT +Q +PV L G+D+ AATGTGKT A++ P++
Sbjct: 203 FHDMNLSRPLLKAI-STMGFKQPTPIQKACVPVGLLGKDICACAATGTGKTAAFMLPVLE 261
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L Y PR + T LVLVPT EL + V+ + ++L +F I +GG + ++A
Sbjct: 262 RL-IYKPR--ETQVTRVLVLVPTRELGIQVHTVARQLA-QFTTISTCLAVGGLDLKSQEA 317
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216
LR G +L+ATPG L+DHL +T SF + + +I DEADR+L+ F ++++EI+
Sbjct: 318 ALRAGPDVLIATPGRLIDHLHNTPSFELSQIEILILDEADRMLDEYFEEQMKEII----- 372
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
R A +RQ +L SAT++E+V L +SL+ PV I
Sbjct: 373 RMCA----------YQRQTMLFSATMSEEVKDLASVSLKQPVRI 406
>ASPGD|ASPL0000061778 [details] [associations]
symbol:AN0589 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 RefSeq:XP_658193.1
ProteinModelPortal:Q5BFU1 SMR:Q5BFU1 STRING:Q5BFU1
EnsemblFungi:CADANIAT00002085 GeneID:2876356 KEGG:ani:AN0589.2
HOGENOM:HOG000268801 OMA:MFERKNQ OrthoDB:EOG4R53B0 Uniprot:Q5BFU1
Length = 812
Score = 329 (120.9 bits), Expect = 1.1e-28, P = 1.1e-28
Identities = 89/261 (34%), Positives = 144/261 (55%)
Query: 56 FEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALV 115
F+ T +Q++AI L GRDVL A TG+GKT+A+L PI+ +L Y + G AL+
Sbjct: 68 FKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPILENL--YRKQWSDHDGLGALI 125
Query: 116 LVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDH 175
+ PT EL + ++E+L+K+ R+ G V+GG + +E+ RL + ++ILV TPG +L H
Sbjct: 126 ISPTRELAIQIFEVLRKI-GRYHTFSAGLVIGGKSLKEEQERLGR-MNILVCTPGRMLQH 183
Query: 176 LKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQN 235
L T+ F NL+ ++ DEADRI+++GF K ++ I+ L +RQ
Sbjct: 184 LDQTAFFETYNLQMLVLDEADRIMDMGFQKTVDAIIGHLPP---------------ERQT 228
Query: 236 LLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKSNVHFGSLESDVKEEVE----HPN 291
LL SAT +KV+ L ++SL+ P + + E S + + + + ++++
Sbjct: 229 LLFSATQTKKVSDLARLSLQDPEYVAVHEAASSATPSKLQQHYVVTPLPQKLDTLWSFIR 288
Query: 292 TTLSSSTEDFMLPAKLVQRYV 312
+ L S T FM K V R+V
Sbjct: 289 SNLKSKTIVFMSSGKQV-RFV 308
>UNIPROTKB|F1NQV5 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
Length = 758
Score = 327 (120.2 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 86/235 (36%), Positives = 131/235 (55%)
Query: 26 ETVKEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTG 85
E E + F + L L + LGF+ PT +Q IPV L G+D+ AATGTG
Sbjct: 171 EDASEYDDNLSFQDMNLSRPLLKAITA-LGFKQPTPIQKACIPVGLLGKDICACAATGTG 229
Query: 86 KTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYV 145
KT A++ P++ L Y PR ++ T LVLVPT EL + V+ + ++L +F +
Sbjct: 230 KTAAFILPVLERL-IYKPR--QAPITRVLVLVPTRELGIQVHSVTKQLA-QFSSVTTCLA 285
Query: 146 MGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGK 205
+GG + ++A LR G IL+ATPG L+DHL + SF +++ +I DEADR+L+ F +
Sbjct: 286 VGGLDVKTQEAALRSGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEE 345
Query: 206 EIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
+++EI+ + SR+ RQ +L SAT+ E+V L +SL+ P I
Sbjct: 346 QMKEIIRLC-SRH--------------RQTMLFSATMTEEVKDLASVSLKNPTRI 385
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 327 (120.2 bits), Expect = 1.7e-28, P = 1.7e-28
Identities = 83/232 (35%), Positives = 129/232 (55%)
Query: 32 FASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYL 91
F + F L L L + E LG++ PT +QA IP+ L+GRD+ +A TG+GKT A+
Sbjct: 164 FHADTFMELNLSRPLL-RACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFA 222
Query: 92 APIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNR 151
P + L + P+ R T L+L PT EL + ++ ++Q L +F I G ++GG +
Sbjct: 223 LPTLERLL-FRPK--RVFATRVLILTPTRELAVQIHSMIQNLA-QFTDIKCGLIVGGLSV 278
Query: 152 SKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 211
+++ LR I+VATPG ++DHL+++ S +L +I DEADR+L+ GF EI E++
Sbjct: 279 REQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELV 338
Query: 212 DILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLD 263
+ R RQ +L SAT+ E+V L K+SL P+ + D
Sbjct: 339 RLCPKR---------------RQTMLFSATMTEEVKELVKLSLNKPLRLSAD 375
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 74/175 (42%), Positives = 106/175 (60%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
FS+L L++ L D L E LG++ PT +Q +AIP IL+ +DV+ A TGTGKT A+ PI+
Sbjct: 3 FSALSLNTQLVDTLAE-LGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQ 61
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L + + + ALVLVPT EL L V + K + I G GG + ++A
Sbjct: 62 LLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYA-KGTDIRVGIAYGGVSIEAQQA 120
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 211
GI +L+ATPG LLDHL+ + L+ L ++FDEADR+L++GF EI+ +L
Sbjct: 121 VFNAGIDVLIATPGRLLDHLRQGALNLN-QLNTLVFDEADRMLDMGFMDEIQAVL 174
Score = 164 (62.8 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 49/148 (33%), Positives = 76/148 (51%)
Query: 143 GYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELG 202
G GG + ++A GI +L+ATPG LLDHL+ + L+ L ++FDEADR+L++G
Sbjct: 107 GIAYGGVSIEAQQAVFNAGIDVLIATPGRLLDHLRQGALNLN-QLNTLVFDEADRMLDMG 165
Query: 203 FGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGL 262
F EI+ +L +V +RQ LL SATL++ + +K L P I +
Sbjct: 166 FMDEIQAVL--------------KQVP-AQRQTLLFSATLDDSIFSFSKNLLRDPKRIEV 210
Query: 263 DEKKFPEDKSNVHFGSLESDVKEE-VEH 289
+ + +++SD K E V H
Sbjct: 211 AKPNTTAAQIEQRVYAIDSDRKTEFVSH 238
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 74/175 (42%), Positives = 106/175 (60%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
FS+L L++ L D L E LG++ PT +Q +AIP IL+ +DV+ A TGTGKT A+ PI+
Sbjct: 3 FSALSLNTQLVDTLAE-LGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQ 61
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L + + + ALVLVPT EL L V + K + I G GG + ++A
Sbjct: 62 LLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYA-KGTDIRVGIAYGGVSIEAQQA 120
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 211
GI +L+ATPG LLDHL+ + L+ L ++FDEADR+L++GF EI+ +L
Sbjct: 121 VFNAGIDVLIATPGRLLDHLRQGALNLN-QLNTLVFDEADRMLDMGFMDEIQAVL 174
Score = 164 (62.8 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 49/148 (33%), Positives = 76/148 (51%)
Query: 143 GYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELG 202
G GG + ++A GI +L+ATPG LLDHL+ + L+ L ++FDEADR+L++G
Sbjct: 107 GIAYGGVSIEAQQAVFNAGIDVLIATPGRLLDHLRQGALNLN-QLNTLVFDEADRMLDMG 165
Query: 203 FGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGL 262
F EI+ +L +V +RQ LL SATL++ + +K L P I +
Sbjct: 166 FMDEIQAVL--------------KQVP-AQRQTLLFSATLDDSIFSFSKNLLRDPKRIEV 210
Query: 263 DEKKFPEDKSNVHFGSLESDVKEE-VEH 289
+ + +++SD K E V H
Sbjct: 211 AKPNTTAAQIEQRVYAIDSDRKTEFVSH 238
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 319 (117.4 bits), Expect = 2.7e-28, P = 2.7e-28
Identities = 85/259 (32%), Positives = 135/259 (52%)
Query: 27 TVKEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGK 86
T EI S F LG+ LC+ ++LG++ PTK+Q +AIPV L GRDV+ A TG+GK
Sbjct: 73 TTGEIHTS--FKELGVTEVLCEAC-DQLGWKKPTKIQIEAIPVALQGRDVIGLAETGSGK 129
Query: 87 TVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVM 146
T A+ P++ L + + R+ LVL PT EL + E L + ++
Sbjct: 130 TGAFAVPVLQSLLACAQRLH------TLVLTPTRELAFQIAEQFDALGSSIG-VKTAVIV 182
Query: 147 GGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 206
GG + + L K +++ATPG L+DH+++T F L++++ DEADRIL + F E
Sbjct: 183 GGIDMMSQALVLAKKPHVVIATPGRLIDHMENTKGFNLRALKYLVMDEADRILNMDFESE 242
Query: 207 IEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKK 266
+++IL ++ R+ R+ L SAT+ +KV L + +L+ PV + K
Sbjct: 243 VDKILKVI-PRD--------------RRTFLFSATMTKKVQKLQRAALQDPVKCSVSSKY 287
Query: 267 FPEDKSNVHFGSLESDVKE 285
DK + + S K+
Sbjct: 288 ATVDKLQQFYIFIPSKYKD 306
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 84/238 (35%), Positives = 132/238 (55%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
FS+L L + + + + + LG+ PT +Q +AIPV+L+G+D++ A TGTGKT +++ P++
Sbjct: 3 FSTLKLSTPILNAIAD-LGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLE 61
Query: 97 HLQSYSPRID---RSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSK 153
L S R+ AL+LVPT EL + V + + ++ I + GG + +
Sbjct: 62 QLNSQYKETGKKLRAKRIRALILVPTRELAVQVEASISQYA-KYLDISSMAMYGGVDAQE 120
Query: 154 EKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDI 213
+K RL G+ ILVATPG LLD + H L ++ DEADR+L++GF +I +I++
Sbjct: 121 QKQRLIWGVDILVATPGRLLD-MTHQRVLHFDELDMLVLDEADRMLDMGFIDDINKIIER 179
Query: 214 LGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPV--LIGLDEKKFPE 269
L RQNLL SAT++E+V L K ++ PV IG D+ P+
Sbjct: 180 LPEH---------------RQNLLFSATMSEEVRGLAKRTIHKPVEISIGADKASKPK 222
>POMBASE|SPAC1093.05 [details] [associations]
symbol:SPAC1093.05 "ATP-dependent RNA helicase Hca4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1093.05 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 PIR:T50068 RefSeq:NP_594652.1
ProteinModelPortal:Q9UTP9 SMR:Q9UTP9 STRING:Q9UTP9
EnsemblFungi:SPAC1093.05.1 GeneID:2541630 KEGG:spo:SPAC1093.05
NextBio:20802723 Uniprot:Q9UTP9
Length = 735
Score = 322 (118.4 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 84/231 (36%), Positives = 126/231 (54%)
Query: 60 TKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 119
T++Q Q IP L GRD+L A TG+GKT+A++ P+I +L Y + G ALV+ PT
Sbjct: 63 TEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENL--YRKKWTSLDGLGALVISPT 120
Query: 120 SELCLLVYEILQKL--LHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLK 177
EL + +E L K+ LH F G ++GG N +EK RL + ++ILV TPG LL H+
Sbjct: 121 RELAIQTFETLVKIGRLHSFS---AGLIIGGNNYKEEKERLSR-MNILVCTPGRLLQHID 176
Query: 178 HTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLL 237
+F + L+ +I DEADRIL++GF ++ I+ L V RQ +L
Sbjct: 177 QAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLP---------------VHRQTML 221
Query: 238 LSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKSNVHFGSLESDVKEEVE 288
SAT + V L ++SL+ P I + E SN++ L + E+++
Sbjct: 222 FSATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKLD 272
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
Identities = 85/226 (37%), Positives = 117/226 (51%)
Query: 34 SCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAP 93
S FS LGLDS L + L E LG PT +Q QAIP +L G+DVL A TGTGKT A+ P
Sbjct: 5 SITFSQLGLDSRLLNTLSE-LGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLP 63
Query: 94 IINH-LQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRS 152
+I ++ R S ALVLVPT EL V + LQ + V GG +
Sbjct: 64 LIQRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVA-VYGGTSMK 122
Query: 153 KEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 212
+ LR G+ IL+ATPG LLDH H S + ++ DEADR+L++GF +++ +L
Sbjct: 123 VQLNHLRGGVDILIATPGRLLDHA-HVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVL- 180
Query: 213 ILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPV 258
R ++ + RQ L SAT + K+ + + P+
Sbjct: 181 ----RRLSPL----------RQTLFFSATFDSKIKAVAYRIMRDPI 212
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
Identities = 85/226 (37%), Positives = 117/226 (51%)
Query: 34 SCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAP 93
S FS LGLDS L + L E LG PT +Q QAIP +L G+DVL A TGTGKT A+ P
Sbjct: 5 SITFSQLGLDSRLLNTLSE-LGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLP 63
Query: 94 IINH-LQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRS 152
+I ++ R S ALVLVPT EL V + LQ + V GG +
Sbjct: 64 LIQRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVA-VYGGTSMK 122
Query: 153 KEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 212
+ LR G+ IL+ATPG LLDH H S + ++ DEADR+L++GF +++ +L
Sbjct: 123 VQLNHLRGGVDILIATPGRLLDHA-HVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVL- 180
Query: 213 ILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPV 258
R ++ + RQ L SAT + K+ + + P+
Sbjct: 181 ----RRLSPL----------RQTLFFSATFDSKIKAVAYRIMRDPI 212
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 312 (114.9 bits), Expect = 8.2e-28, P = 8.2e-28
Identities = 69/178 (38%), Positives = 108/178 (60%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+ LGL L +R++ G+E P+ +QAQAIP ++SGRDV+ A TGTGKT + P++
Sbjct: 8 FTDLGLSEALLKAVRDK-GYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQ 66
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L S S+ AL+L PT EL + E ++ + ++ + V GG + + A
Sbjct: 67 RLSSSKGNKVSSNNVRALILTPTRELAAQISESIE-VYGKYLNLHSMVVFGGVKINPQIA 125
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214
RLR+G+ +LVATPG LLD L + + + L I DEADR+L++GF ++I++++ L
Sbjct: 126 RLRQGVDVLVATPGRLLD-LYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTAL 182
Score = 161 (61.7 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 44/127 (34%), Positives = 69/127 (54%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 204
V GG + + ARLR+G+ +LVATPG LLD L + + + L I DEADR+L++GF
Sbjct: 114 VFGGVKINPQIARLRQGVDVLVATPGRLLD-LYNQRAVKFSQLEVFILDEADRMLDMGFI 172
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDE 264
++I++++ L RQNLL SAT + ++ L K + P+ I +D
Sbjct: 173 RDIKKLMTALPK---------------DRQNLLFSATFSPEIRALAKGMVNNPLEISVDA 217
Query: 265 KKFPEDK 271
+ +K
Sbjct: 218 ENSTAEK 224
>MGI|MGI:2385884 [details] [associations]
symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2385884 GO:GO:0005524
GO:GO:0005634 EMBL:CH466551 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH OrthoDB:EOG4NVZJV
EMBL:AK134274 EMBL:AK138442 EMBL:AL591711 EMBL:BC011321
EMBL:BC024730 EMBL:BC026381 IPI:IPI00122038 IPI:IPI00230236
RefSeq:NP_694705.2 UniGene:Mm.295031 ProteinModelPortal:Q921N6
SMR:Q921N6 PhosphoSite:Q921N6 PaxDb:Q921N6 PRIDE:Q921N6
Ensembl:ENSMUST00000018143 Ensembl:ENSMUST00000150571 GeneID:228889
KEGG:mmu:228889 UCSC:uc008nza.1 InParanoid:Q3UUG2 NextBio:379240
Bgee:Q921N6 CleanEx:MM_DDX27 Genevestigator:Q921N6
GermOnline:ENSMUSG00000017999 Uniprot:Q921N6
Length = 760
Score = 319 (117.4 bits), Expect = 1.1e-27, P = 1.1e-27
Identities = 84/235 (35%), Positives = 128/235 (54%)
Query: 26 ETVKEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTG 85
E E S F + L L + +GF+ PT +Q IPV L G+D+ AATGTG
Sbjct: 175 EDASEYDKSLSFQDMNLSRPLLKAITA-MGFKQPTPIQKACIPVGLLGKDICACAATGTG 233
Query: 86 KTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYV 145
KT A+ P++ L Y PR +++ T LVLVPT EL + V+ + ++L +F I
Sbjct: 234 KTAAFALPVLERL-IYKPR--QAAVTRVLVLVPTRELGIQVHSVTKQLA-QFCSITTCLA 289
Query: 146 MGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGK 205
+GG + ++A LR IL+ATPG L+DHL + SF +++ +I DEADR+L+ F +
Sbjct: 290 VGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEE 349
Query: 206 EIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
+++EI+ + RQ +L SAT+ ++V L +SL+ PV I
Sbjct: 350 QMKEIIRMCSHH---------------RQTMLFSATMTDEVKDLASVSLKNPVRI 389
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 312 (114.9 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 80/249 (32%), Positives = 130/249 (52%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+ LG+ LCD +RLG+ P+K+Q A+P L G+DV+ A TG+GKT A+ P++
Sbjct: 46 FAELGVSQPLCDAC-QRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQ 104
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L +D F LVL PT EL + + + L ++ ++GG + + +
Sbjct: 105 SL------LDHPQAFFCLVLTPTRELAFQIGQQFEALGSGIG-LIAAVIVGGVDMAAQAM 157
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216
L + I+VATPG L+DHL++T F L+++I DEADRIL + F E+++IL ++
Sbjct: 158 ALARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPR 217
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKSNVHF 276
+R+ L SAT+ +KV+ L + SL P + + + D H+
Sbjct: 218 ---------------ERRTYLFSATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHY 262
Query: 277 GSLESDVKE 285
+ + KE
Sbjct: 263 IFVPNKYKE 271
>UNIPROTKB|E1C187 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AADN02019007
IPI:IPI00822640 Ensembl:ENSGALT00000011297 ArrayExpress:E1C187
Uniprot:E1C187
Length = 759
Score = 318 (117.0 bits), Expect = 1.5e-27, P = 1.5e-27
Identities = 86/236 (36%), Positives = 131/236 (55%)
Query: 26 ETVKEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGT- 84
E E + F + L L + LGF+ PT +Q IPV L G+D+ AATGT
Sbjct: 171 EDASEYDDNLSFQDMNLSRPLLKAITA-LGFKQPTPIQKACIPVGLLGKDICACAATGTV 229
Query: 85 GKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGY 144
GKT A++ P++ L Y PR ++ T LVLVPT EL + V+ + ++L +F +
Sbjct: 230 GKTAAFILPVLERL-IYKPR--QAPITRVLVLVPTRELGIQVHSVTKQLA-QFSSVTTCL 285
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 204
+GG + ++A LR G IL+ATPG L+DHL + SF +++ +I DEADR+L+ F
Sbjct: 286 AVGGLDVKTQEAALRSGPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFE 345
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
++++EI+ + SR+ RQ +L SAT+ E+V L +SL+ P I
Sbjct: 346 EQMKEIIRLC-SRH--------------RQTMLFSATMTEEVKDLASVSLKNPTRI 386
>UNIPROTKB|F1SV16 [details] [associations]
symbol:F1SV16 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074980 EMBL:CU930036
Ensembl:ENSSSCT00000016375 OMA:SAREVPM Uniprot:F1SV16
Length = 301
Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 83/231 (35%), Positives = 123/231 (53%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
FS L L L+E + T++Q Q I + L G+DVL A TG+GKT+A+L P++
Sbjct: 71 FSDLPLSKKTLKGLQEAQ-YRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL--LHRFRWIVPGYVMGGGNRSKE 154
L Y + + G L++ PT EL +E+L+K+ H F G ++GG + E
Sbjct: 130 AL--YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFS---AGLIIGGKDLKHE 184
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214
R+ I+ILV TPG LL H+ T F TNL+ ++ DEADRIL++GF + I++
Sbjct: 185 AERINN-INILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIE-- 241
Query: 215 GSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265
N+ KRQ LL SAT + V L ++SL+ P + + EK
Sbjct: 242 ---NLPK----------KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEK 279
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 70/180 (38%), Positives = 106/180 (58%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
FS LGL L + + LG++ PT +Q QAIPVIL GRD++ A TGTGKT +++ PI+
Sbjct: 3 FSQLGLSDVLVQTVAQ-LGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L+ + R AL+LVPT EL + V E +++ + + V GG + +K
Sbjct: 62 KLRQ--GQTQRKKRVRALILVPTRELAMQVAEKVEQY-GKDTGLKSLAVFGGVDEQAQKQ 118
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216
RL G+ +LVATPG L+D + + + ++ DEADR+L++GF + I +I+D L S
Sbjct: 119 RLIDGVDVLVATPGRLMDLYGQRAVYFE-EIEMVVLDEADRMLDMGFIESINKIIDCLPS 177
Score = 159 (61.0 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 46/130 (35%), Positives = 68/130 (52%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 204
V GG + +K RL G+ +LVATPG L+D + + + ++ DEADR+L++GF
Sbjct: 107 VFGGVDEQAQKQRLIDGVDVLVATPGRLMDLYGQRAVYFE-EIEMVVLDEADRMLDMGFI 165
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDE 264
+ I +I+D L S EV Q LL SATL+ KV L K ++ P I +
Sbjct: 166 ESINKIIDCLPS----------EV-----QFLLFSATLSRKVRELAKTAVRDPHEISIAA 210
Query: 265 KKFPEDKSNV 274
+ KSN+
Sbjct: 211 NQ--ASKSNI 218
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 70/180 (38%), Positives = 106/180 (58%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
FS LGL L + + LG++ PT +Q QAIPVIL GRD++ A TGTGKT +++ PI+
Sbjct: 3 FSQLGLSDVLVQTVAQ-LGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L+ + R AL+LVPT EL + V E +++ + + V GG + +K
Sbjct: 62 KLRQ--GQTQRKKRVRALILVPTRELAMQVAEKVEQY-GKDTGLKSLAVFGGVDEQAQKQ 118
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216
RL G+ +LVATPG L+D + + + ++ DEADR+L++GF + I +I+D L S
Sbjct: 119 RLIDGVDVLVATPGRLMDLYGQRAVYFE-EIEMVVLDEADRMLDMGFIESINKIIDCLPS 177
Score = 159 (61.0 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 46/130 (35%), Positives = 68/130 (52%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 204
V GG + +K RL G+ +LVATPG L+D + + + ++ DEADR+L++GF
Sbjct: 107 VFGGVDEQAQKQRLIDGVDVLVATPGRLMDLYGQRAVYFE-EIEMVVLDEADRMLDMGFI 165
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDE 264
+ I +I+D L S EV Q LL SATL+ KV L K ++ P I +
Sbjct: 166 ESINKIIDCLPS----------EV-----QFLLFSATLSRKVRELAKTAVRDPHEISIAA 210
Query: 265 KKFPEDKSNV 274
+ KSN+
Sbjct: 211 NQ--ASKSNI 218
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 89/226 (39%), Positives = 122/226 (53%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+ LG+ + L ++L E LG+ +PT VQA IP +LSGRDVL A TG+GKT A+ P++
Sbjct: 11 FAELGIIAPLGNRLTE-LGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQ 69
Query: 97 HLQSYSPRIDRSSGTF-ALVLVPTSELCLLVYEILQKLLHRFRW---IVPGYVMGGGNRS 152
L S + D+S+G LVLVPT EL V + F IV + GG + +
Sbjct: 70 RL-SEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAF--GGVSVN 126
Query: 153 KEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 212
+ LR G +LVATPG LLD L + L T + + DEADR+L LGF +E+E++L
Sbjct: 127 LQMQSLRAGADVLVATPGRLLDLLASNALKL-TQVSAFVLDEADRMLSLGFTEELEQVLA 185
Query: 213 ILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPV 258
L + +Q LL SAT E+V LT L P+
Sbjct: 186 ALPRQ---------------KQTLLFSATFPEEVRALTTKLLHQPL 216
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 89/226 (39%), Positives = 122/226 (53%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+ LG+ + L ++L E LG+ +PT VQA IP +LSGRDVL A TG+GKT A+ P++
Sbjct: 11 FAELGIIAPLGNRLTE-LGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQ 69
Query: 97 HLQSYSPRIDRSSGTF-ALVLVPTSELCLLVYEILQKLLHRFRW---IVPGYVMGGGNRS 152
L S + D+S+G LVLVPT EL V + F IV + GG + +
Sbjct: 70 RL-SEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAF--GGVSVN 126
Query: 153 KEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 212
+ LR G +LVATPG LLD L + L T + + DEADR+L LGF +E+E++L
Sbjct: 127 LQMQSLRAGADVLVATPGRLLDLLASNALKL-TQVSAFVLDEADRMLSLGFTEELEQVLA 185
Query: 213 ILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPV 258
L + +Q LL SAT E+V LT L P+
Sbjct: 186 ALPRQ---------------KQTLLFSATFPEEVRALTTKLLHQPL 216
>FB|FBgn0030631 [details] [associations]
symbol:CG6227 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014298 GO:GO:0005681 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
HSSP:Q58083 GeneTree:ENSGT00610000086076 KO:K12811 OMA:RGRYKVL
EMBL:FJ764847 EMBL:FJ764848 EMBL:FJ764851 EMBL:FJ764853
EMBL:FJ764855 EMBL:FJ764858 FlyBase:FBgn0030631 EMBL:BT016090
RefSeq:NP_573020.2 UniGene:Dm.168 SMR:Q9VXW2 IntAct:Q9VXW2
EnsemblMetazoa:FBtr0074011 GeneID:32464 KEGG:dme:Dmel_CG6227
UCSC:CG6227-RA InParanoid:Q9VXW2 GenomeRNAi:32464 NextBio:778600
Uniprot:Q9VXW2
Length = 1224
Score = 318 (117.0 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 80/251 (31%), Positives = 135/251 (53%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
++ G+ + LR RLGFE PT +Q QAIP I+SGRD++ A TG+GKT+A++ P+
Sbjct: 512 WAQCGVSKKEMEVLR-RLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 570
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
H+ P ++ G A+++ PT ELC+ + + ++K + + P V GG S++ A
Sbjct: 571 HILD-QPSMEDGDGAIAIIMAPTRELCMQIGKDIRKF-SKSLGLRPVCVYGGTGISEQIA 628
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILDI 213
L++G I+V TPG ++D L S + TNLR +++ DEADR+ ++GF ++ I+D
Sbjct: 629 ELKRGAEIIVCTPGRMIDMLAANSGRV-TNLRRVTYVVLDEADRMFDMGFEPQVMRIID- 686
Query: 214 LGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKSN 273
N+ RQ ++ SAT ++ L + L+ P+ + + + +
Sbjct: 687 ----NVRP----------DRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVE 732
Query: 274 VHFGSLESDVK 284
H L D K
Sbjct: 733 QHVVILNDDAK 743
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 298 (110.0 bits), Expect = 4.5e-27, Sum P(2) = 4.5e-27
Identities = 65/176 (36%), Positives = 104/176 (59%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F L L L + ++LGF PT +QA+AIP+ L+G+D+L +A+TG+GKT A+L P++
Sbjct: 192 FEELHLSRPLLKAV-QKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLE 250
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L R L+L+PT EL L +++ L +F I ++GG + ++
Sbjct: 251 RLLF---RDSEYRAIRVLILLPTRELALQCQSVMENLA-QFSNITSCLIVGGLSNKAQEV 306
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 212
LRK +++ATPG L+DHL + +L +I DEADR+L++GF EI +I++
Sbjct: 307 ELRKSPDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVE 362
Score = 214 (80.4 bits), Expect = 2.7e-15, P = 2.7e-15
Identities = 52/150 (34%), Positives = 83/150 (55%)
Query: 114 LVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLL 173
L+L+PT EL L +++ L +F I ++GG + ++ LRK +++ATPG L+
Sbjct: 265 LILLPTRELALQCQSVMENLA-QFSNITSCLIVGGLSNKAQEVELRKSPDVVIATPGRLI 323
Query: 174 DHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKR 233
DHL + +L +I DEADR+L++GF EI +I+ E R
Sbjct: 324 DHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIV---------------ESCPTNR 368
Query: 234 QNLLLSATLNEKVNHLTKISLETPVLIGLD 263
Q +L SATLN++V L K+SL+ P+ + +D
Sbjct: 369 QTMLFSATLNDEVKTLAKLSLQQPIRVQVD 398
Score = 41 (19.5 bits), Expect = 4.5e-27, Sum P(2) = 4.5e-27
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 204 GKEIEEILDILGSRNIASI 222
GK+++ +D+ G N+ SI
Sbjct: 647 GKKLKAPIDVTGVNNVPSI 665
>UNIPROTKB|F1Q073 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
Length = 767
Score = 313 (115.2 bits), Expect = 5.1e-27, P = 5.1e-27
Identities = 82/224 (36%), Positives = 124/224 (55%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F + L L + +GF+ PT +Q IPV L G+D+ AATGTGKT A+ P++
Sbjct: 189 FQDMNLSRPLLKAITA-MGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 247
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L Y PR +S T LVLVPT EL + V+ + ++L +F I +GG + ++A
Sbjct: 248 RL-IYKPR--QSPVTRVLVLVPTRELGIQVHSVTKQLA-QFCNITTCLAVGGLDVKSQEA 303
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216
LR IL+ATPG L+DHL + SF +++ +I DEADR+L+ F ++++EI+ +
Sbjct: 304 ALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSH 363
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
RQ +L SAT+ ++V L +SL+ PV I
Sbjct: 364 H---------------RQTMLFSATMTDEVKDLASVSLKNPVRI 392
>DICTYBASE|DDB_G0284017 [details] [associations]
symbol:ddx10 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0284017 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000153_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AAFI02000059 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HSSP:P26196 RefSeq:XP_638786.1 ProteinModelPortal:Q54Q94
STRING:Q54Q94 PRIDE:Q54Q94 EnsemblProtists:DDB0234197
GeneID:8624375 KEGG:ddi:DDB_G0284017 OMA:AMNILIA Uniprot:Q54Q94
Length = 878
Score = 314 (115.6 bits), Expect = 5.3e-27, P = 5.3e-27
Identities = 76/215 (35%), Positives = 122/215 (56%)
Query: 60 TKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 119
T +Q ++P L GRD+L A TG+GKT++++ PI+ L + R R G A+VL PT
Sbjct: 165 TDIQRASLPHTLCGRDILGAAKTGSGKTLSFILPILETL--WRNRWGRDDGIGAIVLSPT 222
Query: 120 SELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHT 179
EL + ++++L K + ++ G ++GG N +EK ++ ++IL+ATPG LL H+ T
Sbjct: 223 RELAIQIFDVL-KAVGKYHTFSAGLIIGGRNVQQEKDKIN-AMNILIATPGRLLQHMDET 280
Query: 180 SSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLS 239
F +NL+ ++ DEADRIL+LGF K + I++ N+ +RQ LL S
Sbjct: 281 YGFDCSNLKILVLDEADRILDLGFSKCLNSIVE-----NLPR----------ERQTLLFS 325
Query: 240 ATLNEKVNHLTKISLETPVLIGLDEKKFPEDKSNV 274
AT + + L ++SL+ P I + EK N+
Sbjct: 326 ATQTKSIRDLARLSLQEPEYISVYEKDITTTPQNL 360
>UNIPROTKB|J9P9C6 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
Length = 788
Score = 313 (115.2 bits), Expect = 5.5e-27, P = 5.5e-27
Identities = 82/224 (36%), Positives = 124/224 (55%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F + L L + +GF+ PT +Q IPV L G+D+ AATGTGKT A+ P++
Sbjct: 210 FQDMNLSRPLLKAITA-MGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 268
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L Y PR +S T LVLVPT EL + V+ + ++L +F I +GG + ++A
Sbjct: 269 RL-IYKPR--QSPVTRVLVLVPTRELGIQVHSVTKQLA-QFCNITTCLAVGGLDVKSQEA 324
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216
LR IL+ATPG L+DHL + SF +++ +I DEADR+L+ F ++++EI+ +
Sbjct: 325 ALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSH 384
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
RQ +L SAT+ ++V L +SL+ PV I
Sbjct: 385 H---------------RQTMLFSATMTDEVKDLASVSLKNPVRI 413
>CGD|CAL0004182 [details] [associations]
symbol:HCA4 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004182 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 EMBL:AACQ01000023 EMBL:AACQ01000025
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_720233.1 RefSeq:XP_720463.1 ProteinModelPortal:Q5AF95
STRING:Q5AF95 GeneID:3637911 GeneID:3638091 KEGG:cal:CaO19.10227
KEGG:cal:CaO19.2712 KO:K14776 InterPro:IPR025313 Pfam:PF13959
Uniprot:Q5AF95
Length = 765
Score = 311 (114.5 bits), Expect = 8.4e-27, P = 8.4e-27
Identities = 81/226 (35%), Positives = 122/226 (53%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
FS L + L+E F + T +Q + IP+ L G D++ A TG+GKT+A+L P+I
Sbjct: 50 FSDLPITENTLKGLKEAT-FVSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLIPVIE 108
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L +I G AL++ PT EL + ++E+L K+ ++ G V GG + EK
Sbjct: 109 SL--IRNKITEYDGLAALIVSPTRELAVQIFEVLTKI-GKYNTFSAGLVTGGKDVQFEKE 165
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216
R+ + ++ILV TPG + HL +NL+ ++ DEADR L++GF K+I+ IL L +
Sbjct: 166 RVSR-MNILVGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNILGHLPT 224
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGL 262
RQ LL SAT +E VN L ++SL P IG+
Sbjct: 225 T---------------RQTLLFSATQSESVNDLARLSLTNPNKIGV 255
>UNIPROTKB|A1A4H6 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:BC126497 IPI:IPI00734460 RefSeq:NP_001073740.1 UniGene:Bt.2644
ProteinModelPortal:A1A4H6 PRIDE:A1A4H6 Ensembl:ENSBTAT00000057089
GeneID:514567 KEGG:bta:514567 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH NextBio:20871404
Uniprot:A1A4H6
Length = 765
Score = 311 (114.5 bits), Expect = 8.4e-27, P = 8.4e-27
Identities = 81/224 (36%), Positives = 124/224 (55%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F + L L + +GF+ PT +Q IPV L G+D+ AATGTGKT A+ P++
Sbjct: 189 FQDMNLSRPLLKAITA-MGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 247
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L Y PR ++ T LVLVPT EL + V+ + ++L +F I +GG + ++A
Sbjct: 248 RL-IYKPR--QAPVTRVLVLVPTRELGIQVHSVTKQLA-QFCSITTCLAVGGLDVKSQEA 303
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216
LR IL+ATPG L+DHL + SF +++ +I DEADR+L+ F ++++EI+ +
Sbjct: 304 ALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSH 363
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
RQ +L SAT+ ++V L +SL+ PV I
Sbjct: 364 H---------------RQTMLFSATMTDEVKDLASVSLKNPVRI 392
>UNIPROTKB|Q96GQ7 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
Length = 796
Score = 310 (114.2 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 81/224 (36%), Positives = 124/224 (55%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F + L L + +GF+ PT +Q IPV L G+D+ AATGTGKT A+ P++
Sbjct: 220 FQDMNLSRPLLKAITA-MGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 278
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L Y PR ++ T LVLVPT EL + V+ + ++L +F I +GG + ++A
Sbjct: 279 RL-IYKPR--QAPVTRVLVLVPTRELGIQVHSVTRQLA-QFCNITTCLAVGGLDVKSQEA 334
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216
LR IL+ATPG L+DHL + SF +++ +I DEADR+L+ F ++++EI+ +
Sbjct: 335 ALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSH 394
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
RQ +L SAT+ ++V L +SL+ PV I
Sbjct: 395 H---------------RQTMLFSATMTDEVKDLASVSLKNPVRI 423
>FB|FBgn0052344 [details] [associations]
symbol:CG32344 species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:AE014296
GO:GO:0022008 GO:GO:0006200 GO:GO:0003723 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14808
GeneTree:ENSGT00550000075100 HSSP:P10081 EMBL:AY075397
RefSeq:NP_612028.4 UniGene:Dm.796 SMR:Q8SY39 IntAct:Q8SY39
STRING:Q8SY39 EnsemblMetazoa:FBtr0072576 GeneID:326208
KEGG:dme:Dmel_CG32344 UCSC:CG32344-RA FlyBase:FBgn0052344
InParanoid:Q8SY39 OMA:NANDEMS OrthoDB:EOG40CFZ4 GenomeRNAi:326208
NextBio:847633 Uniprot:Q8SY39
Length = 827
Score = 291 (107.5 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 66/180 (36%), Positives = 103/180 (57%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F S+GL L + +R G++ PT +Q + IP+IL GRDV+ A TG+GKT +L P+
Sbjct: 41 FQSMGLGFELIKGITKR-GYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFE 99
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
LQ P + G AL+L PT EL + Y+ +++L RF + V+GG + + +
Sbjct: 100 KLQRREP----TKGARALILSPTRELAVQTYKFIKEL-GRFMELKSILVLGGDSMDSQFS 154
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216
+ ++VATPG L HL ++ +++FDEADR+ E+GFG+++ E L L S
Sbjct: 155 AIHTCPDVIVATPGRFL-HLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPS 213
Score = 155 (59.6 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 45/139 (32%), Positives = 69/139 (49%)
Query: 132 KLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWII 191
K L RF + V+GG + + + + ++VATPG L HL ++ +++
Sbjct: 130 KELGRFMELKSILVLGGDSMDSQFSAIHTCPDVIVATPGRFL-HLCVEMDLKLNSIEYVV 188
Query: 192 FDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTK 251
FDEADR+ E+GFG+++ E L L S RQ ++ SATL + + +
Sbjct: 189 FDEADRLFEMGFGEQLNETLHRLPS---------------SRQTVMFSATLPKLLVEFAR 233
Query: 252 ISLETPVLIGLD-EKKFPE 269
L PVLI LD E K P+
Sbjct: 234 AGLNDPVLIRLDVESKLPD 252
Score = 45 (20.9 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 261 GLDEKKFPEDKSNVHFGSLESDVKEEVEH 289
GL F N F + D+ +EV+H
Sbjct: 645 GLAINNFERQAQNAEFSVSDRDLSQEVKH 673
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 300 (110.7 bits), Expect = 1.6e-26, P = 1.6e-26
Identities = 68/174 (39%), Positives = 102/174 (58%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F LGLD+ L L F+ T++Q QAIP+ ++GRD+L ++ TG+GKT+A++ P+++
Sbjct: 7 FKDLGLDNRLLKNLAH-YNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLH 65
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
+S + + L+LVPT EL VY L+ +L + + GG N + +
Sbjct: 66 --KSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTAT-LITGGENFNDQVK 122
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 210
L +G +VATPG L DHL H S FL L ++ DEADR+L+LGF KE+ I
Sbjct: 123 ALARGPRFIVATPGRLADHLDHRSLFLE-GLETLVLDEADRMLDLGFAKELRRI 175
Score = 193 (73.0 bits), Expect = 6.1e-13, P = 6.1e-13
Identities = 56/156 (35%), Positives = 79/156 (50%)
Query: 114 LVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLL 173
L+LVPT EL VY L+ +L + + GG N + + L +G +VATPG L
Sbjct: 81 LILVPTRELAKQVYGELRSMLGGLSYTAT-LITGGENFNDQVKALARGPRFIVATPGRLA 139
Query: 174 DHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKR 233
DHL H S FL L ++ DEADR+L+LGF KE+ I N + +R
Sbjct: 140 DHLDHRSLFLE-GLETLVLDEADRMLDLGFAKELRRI--------------HNAAKHRRR 184
Query: 234 QNLLLSATLNEK-VNHLTKISLETP--VLIGLDEKK 266
Q L+ SATL+ VN + L P + IG+ ++
Sbjct: 185 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEE 220
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 300 (110.7 bits), Expect = 1.6e-26, P = 1.6e-26
Identities = 68/174 (39%), Positives = 102/174 (58%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F LGLD+ L L F+ T++Q QAIP+ ++GRD+L ++ TG+GKT+A++ P+++
Sbjct: 7 FKDLGLDNRLLKNLAH-YNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLH 65
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
+S + + L+LVPT EL VY L+ +L + + GG N + +
Sbjct: 66 --KSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTAT-LITGGENFNDQVK 122
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 210
L +G +VATPG L DHL H S FL L ++ DEADR+L+LGF KE+ I
Sbjct: 123 ALARGPRFIVATPGRLADHLDHRSLFLE-GLETLVLDEADRMLDLGFAKELRRI 175
Score = 193 (73.0 bits), Expect = 6.1e-13, P = 6.1e-13
Identities = 56/156 (35%), Positives = 79/156 (50%)
Query: 114 LVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLL 173
L+LVPT EL VY L+ +L + + GG N + + L +G +VATPG L
Sbjct: 81 LILVPTRELAKQVYGELRSMLGGLSYTAT-LITGGENFNDQVKALARGPRFIVATPGRLA 139
Query: 174 DHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKR 233
DHL H S FL L ++ DEADR+L+LGF KE+ I N + +R
Sbjct: 140 DHLDHRSLFLE-GLETLVLDEADRMLDLGFAKELRRI--------------HNAAKHRRR 184
Query: 234 QNLLLSATLNEK-VNHLTKISLETP--VLIGLDEKK 266
Q L+ SATL+ VN + L P + IG+ ++
Sbjct: 185 QTLMFSATLDHADVNDMAMELLNEPKRIAIGVGSEE 220
>DICTYBASE|DDB_G0277857 [details] [associations]
symbol:helB2 "putative U5 small nuclear
ribonucleoprotein" species:44689 "Dictyostelium discoideum"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0277857 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006397
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 GO:GO:0000375 HSSP:P09052 EMBL:X81824
RefSeq:XP_642321.1 ProteinModelPortal:Q54Y81 STRING:Q54Y81
EnsemblProtists:DDB0219950 GeneID:8621527 KEGG:ddi:DDB_G0277857
OMA:DRYRDND Uniprot:Q54Y81
Length = 834
Score = 308 (113.5 bits), Expect = 2.1e-26, P = 2.1e-26
Identities = 85/258 (32%), Positives = 141/258 (54%)
Query: 42 LDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSY 101
L + + +R+ LG+E P+ +Q Q+IP+ L+GRD+L A TG+GKT A++ P++ ++ S
Sbjct: 420 LPREILEAIRQ-LGYEKPSPIQMQSIPISLTGRDILGIAETGSGKTCAFVIPMLIYI-SK 477
Query: 102 SPRIDRSS---GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA-R 157
PR+ + + G +ALV+ PT EL + + + F + V V GG +++A +
Sbjct: 478 QPRLTKDTEADGPYALVMAPTRELVQQIEKETRNFAQHFGFRVVSLV--GGQSIEDQAYQ 535
Query: 158 LRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSR 217
+ KG I++ATPG L D L+ L+ +I+ DEAD +++LGF ++ +LD + S
Sbjct: 536 VSKGCEIIIATPGRLNDCLEKRYLVLN-QCNYIVLDEADMMIDLGFEPQVTSVLDAMPSS 594
Query: 218 NIAS----IGEGNEV--SNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDE--KKFPE 269
+ S + E E S++ R +L SAT+ V L+K L P I + E K
Sbjct: 595 FLKSEDDEMAEKQESDRSHIYRTTILFSATMPPLVEKLSKKYLRRPCTITIGEAGKVVDR 654
Query: 270 DKSNVHFGSLESDVKEEV 287
+ V F E+D KE +
Sbjct: 655 IRQTVIFVKSENDKKEHL 672
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 302 (111.4 bits), Expect = 2.1e-26, P = 2.1e-26
Identities = 81/229 (35%), Positives = 126/229 (55%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
+ LGL+ LC Q + L ++AP+K+Q +AIPV L G+DV+ A TG+GKT A+ PI++
Sbjct: 63 WKDLGLNEALC-QACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILH 121
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L ++ FALVL PT EL + E + L I V+GG + +
Sbjct: 122 AL------LENPQRYFALVLTPTRELAFQIGEQFEALGSGIG-IKCCVVVGGMDMVAQGL 174
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216
+L K I++ATPG L+DHL++ F +++++ DEADRIL + F E+++IL +L
Sbjct: 175 QLAKKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPR 234
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265
+R+ L SAT+ +KV L + SL+ PV + + K
Sbjct: 235 ---------------ERRTFLFSATMTKKVKKLQRASLKDPVKVEVSNK 268
>TAIR|locus:2074899 [details] [associations]
symbol:AT3G09620 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003723 EMBL:AC016661 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 IPI:IPI00534330
RefSeq:NP_187573.1 UniGene:At.53239 ProteinModelPortal:Q9SF41
SMR:Q9SF41 PaxDb:Q9SF41 PRIDE:Q9SF41 EnsemblPlants:AT3G09620.1
GeneID:820119 KEGG:ath:AT3G09620 KEGG:dosa:Os08t0154200-01
GeneFarm:1024 TAIR:At3g09620 InParanoid:Q9SF41 OMA:RGRYKVL
PhylomeDB:Q9SF41 ArrayExpress:Q9SF41 Genevestigator:Q9SF41
GermOnline:AT3G09620 Uniprot:Q9SF41
Length = 989
Score = 307 (113.1 bits), Expect = 3.7e-26, P = 3.7e-26
Identities = 81/224 (36%), Positives = 125/224 (55%)
Query: 41 GLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQS 100
GL S + D L+ +L +E P +QAQA+P+I+SGRD + A TG+GKT+ ++ P++ H++
Sbjct: 402 GLTSKILDTLK-KLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKD 460
Query: 101 YSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWI-VPGYVMGGGNRSKEKARLR 159
P ++ G LV+ PT EL +Y ++K I VP Y GG +++ + L+
Sbjct: 461 QPP-VEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVY--GGSGVAQQISELK 517
Query: 160 KGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILDILGS 216
+G I+V TPG ++D L TSS TNLR +++ DEADR+ ++GF +I I+
Sbjct: 518 RGTEIVVCTPGRMIDILC-TSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIV----- 571
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
+NI RQ +L SAT +V L + L PV I
Sbjct: 572 QNIRP----------DRQTVLFSATFPRQVETLARKVLNKPVEI 605
>UNIPROTKB|I3LQ10 [details] [associations]
symbol:LOC100626268 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 Ensembl:ENSSSCT00000028964 OMA:RYLVALC
Uniprot:I3LQ10
Length = 684
Score = 303 (111.7 bits), Expect = 4.7e-26, P = 4.7e-26
Identities = 80/228 (35%), Positives = 125/228 (54%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F + L L + +GF+ PT +Q IPV L G+D+ AATGTGKT A+ P++
Sbjct: 213 FQDMNLSRPLLKAITV-MGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 271
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVP---GYVMGGGNRSK 153
L Y PR ++ T LVLVPT EL + V+ + ++L ++ G GG +
Sbjct: 272 RL-IYKPR--QAPVTRVLVLVPTRELGIQVHSVTKQLAQSSLCVITTISGLFAGGLDVKS 328
Query: 154 EKARLRKGI-SILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 212
++A LR IL+ATPG L+DHL + SF +++ +I DEADR+L+ F ++++EI+
Sbjct: 329 QEAALRAAXPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEII- 387
Query: 213 ILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
+ ++ RQ +L SAT+ ++V L +SL+ PV I
Sbjct: 388 --------------RMCSLHRQTMLFSATMTDEVKDLASVSLKNPVRI 421
>UNIPROTKB|E2RC35 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 GeneTree:ENSGT00550000074980
CTD:1662 OMA:ADKVIEP EMBL:AAEX03003508 RefSeq:XP_536583.2
Ensembl:ENSCAFT00000022758 GeneID:479448 KEGG:cfa:479448
Uniprot:E2RC35
Length = 871
Score = 305 (112.4 bits), Expect = 4.8e-26, P = 4.8e-26
Identities = 83/231 (35%), Positives = 122/231 (52%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
FS L L+E + T++Q Q I + L G+DVL A TG+GKT+A+L P++
Sbjct: 71 FSDFPLSKKTLKGLQEAQ-YRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL--LHRFRWIVPGYVMGGGNRSKE 154
L Y + + G L++ PT EL +E+L+K+ H F G ++GG + E
Sbjct: 130 AL--YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFS---AGLIIGGKDLKHE 184
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214
R+ I+ILV TPG LL H+ T F TNL+ ++ DEADRIL++GF + I++
Sbjct: 185 AERINN-INILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIE-- 241
Query: 215 GSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265
N+ KRQ LL SAT + V L ++SL+ P I + EK
Sbjct: 242 ---NLPK----------KRQTLLFSATQTKSVKDLARLSLKNPEYIWVHEK 279
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 299 (110.3 bits), Expect = 6.1e-26, P = 6.1e-26
Identities = 75/230 (32%), Positives = 119/230 (51%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F L L L + + E + F PT +Q++AIP L G+D++ A TG+GKT A+ PI+
Sbjct: 125 FKELNLVPDLLESI-ESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQ 183
Query: 97 HL-QSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEK 155
L + P FALVL PT EL + + L + ++GG + +
Sbjct: 184 SLWHAQQPY-------FALVLAPTRELTFQIKDTFDALGSSMG-LRSSCIVGGMDMMDQA 235
Query: 156 ARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 215
L + ++VATPG ++DHL+HT F NL++++ DEADR+L++ FG +++IL ++
Sbjct: 236 RDLMRKPHVIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIP 295
Query: 216 SRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265
+KR L SAT+ K+ L + SL PV + + K
Sbjct: 296 ---------------IKRTTYLFSATMTNKIEKLQRASLHNPVRVAVSSK 330
>UNIPROTKB|Q08DT0 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP EMBL:DAAA02040206 EMBL:DAAA02040207
EMBL:DAAA02040208 EMBL:DAAA02040209 EMBL:DAAA02040210
EMBL:DAAA02040211 EMBL:DAAA02040212 EMBL:DAAA02040213
EMBL:DAAA02040214 EMBL:DAAA02040215 EMBL:DAAA02040216
EMBL:DAAA02040217 EMBL:BC123579 IPI:IPI00717487
RefSeq:NP_001070349.1 UniGene:Bt.63620 SMR:Q08DT0
Ensembl:ENSBTAT00000003086 GeneID:528483 KEGG:bta:528483
InParanoid:Q08DT0 NextBio:20874836 Uniprot:Q08DT0
Length = 876
Score = 304 (112.1 bits), Expect = 6.3e-26, P = 6.3e-26
Identities = 82/231 (35%), Positives = 122/231 (52%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
FS L L+E + T++Q Q I + L G+DVL A TG+GKT+A+L P++
Sbjct: 71 FSDFPLSKKTLKGLQEAQ-YRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL--LHRFRWIVPGYVMGGGNRSKE 154
L Y + + G L++ PT EL +E+L+K+ H F G ++GG + E
Sbjct: 130 AL--YRLQWTSADGLGVLIISPTRELAYQTFEVLRKVGKNHDFS---AGLIIGGKDLKHE 184
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214
R+ I+ILV TPG LL H+ T F TNL+ ++ DEADRIL++GF + I++
Sbjct: 185 AERINN-INILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIE-- 241
Query: 215 GSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265
N+ KRQ LL SAT + V L ++SL+ P + + EK
Sbjct: 242 ---NLPK----------KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEK 279
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 281 (104.0 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
Identities = 78/235 (33%), Positives = 122/235 (51%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F L S L + R+GFE T +QAQ IP+ LS +DV+ A TGTGKT A+ P++
Sbjct: 5 FQDFNLSSDLMKAIN-RMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVE 63
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRW-IVPGYVMGGGNRSKEK 155
+ SP I A+V+ PT EL + V E L K+ R ++P Y GG + ++
Sbjct: 64 KINPESPNIQ------AIVIAPTRELAIQVSEELYKIGQDKRAKVLPIY--GGQDIGRQI 115
Query: 156 ARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 215
L+K +I+V TPG LLDH+ + L+ N+ ++ DEAD +L +GF +IE IL +
Sbjct: 116 RALKKNPNIIVGTPGRLLDHINRRTIRLN-NVNTVVMDEADEMLNMGFIDDIESILSNVP 174
Query: 216 SRNIASIGEGNEVSNVKR--QNLLLSAT-LNEKVNHLTKISLETPVLIGLDEKKF 267
S + + + +KR + + + K +T +++ L + KKF
Sbjct: 175 SEHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKF 229
Score = 37 (18.1 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 278 SLESDVKEEVEHPNTTLSSSTEDFMLPA 305
+LE + VE TT+S + +F + A
Sbjct: 375 ALEGQQQVTVERLRTTISENNLNFYMTA 402
>GENEDB_PFALCIPARUM|PFL2475w [details] [associations]
symbol:PFL2475w "DEAD/DEAH box helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
Uniprot:Q8I4R9
Length = 717
Score = 302 (111.4 bits), Expect = 6.8e-26, P = 6.8e-26
Identities = 81/234 (34%), Positives = 127/234 (54%)
Query: 34 SCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAP 93
+C +S L + L E+ F PT +Q IP+ L G+ +L N+ TG+GKT+A++ P
Sbjct: 86 NCLWSDLYISRPFLKVLYEQK-FSNPTYIQRDVIPLALEGKSILANSETGSGKTLAFVLP 144
Query: 94 IINHL-QSYSPRIDRSS--GTF----ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVM 146
I+ L QS + ++ R++ G++ AL+L+PT EL L Y++++ L ++ I
Sbjct: 145 ILERLLQSVNIKMRRNNMKGSYNITKALILLPTRELSLQCYDVIRSLT-KYVTITYSLFC 203
Query: 147 GGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 206
GG + +++ +K I V TPG +LD L ++SS L ++FDEAD++LELGF +E
Sbjct: 204 GGIDIKQQEYEFKKRNDIFVCTPGRILDLLLNSSSDFINYLEIVVFDEADKLLELGFKEE 263
Query: 207 IEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
+ILD V K+Q L SATL + L SL+ PV I
Sbjct: 264 CLKILD---------------VCKFKKQILFFSATLTSDIKQLANFSLKNPVFI 302
>UNIPROTKB|Q8I4R9 [details] [associations]
symbol:PFL2475w "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
Uniprot:Q8I4R9
Length = 717
Score = 302 (111.4 bits), Expect = 6.8e-26, P = 6.8e-26
Identities = 81/234 (34%), Positives = 127/234 (54%)
Query: 34 SCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAP 93
+C +S L + L E+ F PT +Q IP+ L G+ +L N+ TG+GKT+A++ P
Sbjct: 86 NCLWSDLYISRPFLKVLYEQK-FSNPTYIQRDVIPLALEGKSILANSETGSGKTLAFVLP 144
Query: 94 IINHL-QSYSPRIDRSS--GTF----ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVM 146
I+ L QS + ++ R++ G++ AL+L+PT EL L Y++++ L ++ I
Sbjct: 145 ILERLLQSVNIKMRRNNMKGSYNITKALILLPTRELSLQCYDVIRSLT-KYVTITYSLFC 203
Query: 147 GGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 206
GG + +++ +K I V TPG +LD L ++SS L ++FDEAD++LELGF +E
Sbjct: 204 GGIDIKQQEYEFKKRNDIFVCTPGRILDLLLNSSSDFINYLEIVVFDEADKLLELGFKEE 263
Query: 207 IEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
+ILD V K+Q L SATL + L SL+ PV I
Sbjct: 264 CLKILD---------------VCKFKKQILFFSATLTSDIKQLANFSLKNPVFI 302
>UNIPROTKB|E9PIF2 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HGNC:HGNC:2735 ChiTaRS:DDX10 EMBL:AP002453
EMBL:AP003027 EMBL:AP003387 IPI:IPI00982941
ProteinModelPortal:E9PIF2 SMR:E9PIF2 Ensembl:ENST00000526794
UCSC:uc001pkl.1 ArrayExpress:E9PIF2 Bgee:E9PIF2 Uniprot:E9PIF2
Length = 835
Score = 303 (111.7 bits), Expect = 7.3e-26, P = 7.3e-26
Identities = 81/231 (35%), Positives = 123/231 (53%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
FS L L+E + T++Q Q I + L G+DVL A TG+GKT+A+L P++
Sbjct: 71 FSDFPLSKKTLKGLQEAQ-YRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL--LHRFRWIVPGYVMGGGNRSKE 154
L Y + + G L++ PT EL +E+L+K+ H F G ++GG + E
Sbjct: 130 AL--YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFS---AGLIIGGKDLKHE 184
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214
R+ I+ILV TPG LL H+ T SF T+L+ ++ DEADRIL++GF + +++
Sbjct: 185 AERINN-INILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIE-- 241
Query: 215 GSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265
N+ KRQ LL SAT + V L ++SL+ P + + EK
Sbjct: 242 ---NLPK----------KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEK 279
>RGD|1308990 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1308990
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 CTD:1662 OrthoDB:EOG4BK536 OMA:ADKVIEP
IPI:IPI00869603 RefSeq:NP_001100290.1 UniGene:Rn.99481
Ensembl:ENSRNOT00000017683 GeneID:300710 KEGG:rno:300710
UCSC:RGD:1308990 NextBio:647348 Uniprot:D3ZBY5
Length = 874
Score = 303 (111.7 bits), Expect = 8.0e-26, P = 8.0e-26
Identities = 82/231 (35%), Positives = 122/231 (52%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
FS L L+E + T++Q Q I + L G+DVL A TG+GKT+A+L P++
Sbjct: 71 FSDFPLSKKTLKGLQEAQ-YRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL--LHRFRWIVPGYVMGGGNRSKE 154
L Y + + G L++ PT EL +E+L+K+ H F G ++GG + E
Sbjct: 130 AL--YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFS---AGLIIGGKDLKHE 184
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214
R+ I+ILV TPG LL H+ T F TNL+ ++ DEADRIL++GF + I++
Sbjct: 185 AERINN-INILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIE-- 241
Query: 215 GSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265
N+ KRQ LL SAT + V L ++SL+ P + + EK
Sbjct: 242 ---NLPK----------KRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEK 279
>UNIPROTKB|Q13206 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CH471065
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268801 CTD:1662 HOVERGEN:HBG102756 OrthoDB:EOG4BK536
EMBL:U28042 EMBL:AB040537 EMBL:AK315216 EMBL:BC091521 EMBL:BC093654
EMBL:BC093656 IPI:IPI00297900 RefSeq:NP_004389.2 UniGene:Hs.591931
PDB:2PL3 PDBsum:2PL3 ProteinModelPortal:Q13206 SMR:Q13206
IntAct:Q13206 STRING:Q13206 PhosphoSite:Q13206 DMDM:76803554
SWISS-2DPAGE:Q13206 PaxDb:Q13206 PeptideAtlas:Q13206 PRIDE:Q13206
Ensembl:ENST00000322536 GeneID:1662 KEGG:hsa:1662 UCSC:uc001pkm.3
GeneCards:GC11P108569 HGNC:HGNC:2735 HPA:HPA004691 MIM:601235
neXtProt:NX_Q13206 PharmGKB:PA27200 InParanoid:Q13206 OMA:ADKVIEP
ChiTaRS:DDX10 EvolutionaryTrace:Q13206 GenomeRNAi:1662 NextBio:6838
ArrayExpress:Q13206 Bgee:Q13206 CleanEx:HS_DDX10
Genevestigator:Q13206 GermOnline:ENSG00000178105 Uniprot:Q13206
Length = 875
Score = 303 (111.7 bits), Expect = 8.0e-26, P = 8.0e-26
Identities = 81/231 (35%), Positives = 123/231 (53%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
FS L L+E + T++Q Q I + L G+DVL A TG+GKT+A+L P++
Sbjct: 71 FSDFPLSKKTLKGLQEAQ-YRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL--LHRFRWIVPGYVMGGGNRSKE 154
L Y + + G L++ PT EL +E+L+K+ H F G ++GG + E
Sbjct: 130 AL--YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFS---AGLIIGGKDLKHE 184
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214
R+ I+ILV TPG LL H+ T SF T+L+ ++ DEADRIL++GF + +++
Sbjct: 185 AERINN-INILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIE-- 241
Query: 215 GSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265
N+ KRQ LL SAT + V L ++SL+ P + + EK
Sbjct: 242 ---NLPK----------KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEK 279
>MGI|MGI:1924841 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1924841 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP ChiTaRS:DDX10 EMBL:BC049261
IPI:IPI00896604 RefSeq:NP_084212.2 UniGene:Mm.133560
ProteinModelPortal:Q80Y44 SMR:Q80Y44 STRING:Q80Y44
PhosphoSite:Q80Y44 PaxDb:Q80Y44 PRIDE:Q80Y44
Ensembl:ENSMUST00000065630 GeneID:77591 KEGG:mmu:77591
UCSC:uc009plz.2 InParanoid:Q80Y44 NextBio:347162 Bgee:Q80Y44
CleanEx:MM_DDX10 Genevestigator:Q80Y44
GermOnline:ENSMUSG00000053289 Uniprot:Q80Y44
Length = 875
Score = 303 (111.7 bits), Expect = 8.0e-26, P = 8.0e-26
Identities = 82/231 (35%), Positives = 122/231 (52%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
FS L L+E + T++Q Q I + L G+DVL A TG+GKT+A+L P++
Sbjct: 71 FSDFPLSKKTLKGLQEAQ-YRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL--LHRFRWIVPGYVMGGGNRSKE 154
L Y + + G L++ PT EL +E+L+K+ H F G ++GG + E
Sbjct: 130 AL--YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFS---AGLIIGGKDLKHE 184
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214
R+ I+ILV TPG LL H+ T F TNL+ ++ DEADRIL++GF + I++
Sbjct: 185 AERINN-INILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIE-- 241
Query: 215 GSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265
N+ KRQ LL SAT + V L ++SL+ P + + EK
Sbjct: 242 ---NLPK----------KRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEK 279
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 72/176 (40%), Positives = 104/176 (59%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+ L LD L + + E +GF PT+VQA+AIP L GRDVL +A TGTGKT A++ P +
Sbjct: 5 FADLELDPILLEAIEE-MGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQ 63
Query: 97 HLQSYSPRIDRSSGTFA-LVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEK 155
+L + PR R +G L+L PT EL + V E Q L R + + + GG + +E
Sbjct: 64 YLLDF-PR--RKAGPARILILTPTRELAMQVAEQAQALAKNTRLNI--FTITGGVQYQEH 118
Query: 156 AR-LRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 210
A L I+VATPG LL+++ F + W+I DEADR+L++GFG ++ +
Sbjct: 119 ADILATTQDIVVATPGRLLEYID-AERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 72/176 (40%), Positives = 104/176 (59%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+ L LD L + + E +GF PT+VQA+AIP L GRDVL +A TGTGKT A++ P +
Sbjct: 5 FADLELDPILLEAIEE-MGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQ 63
Query: 97 HLQSYSPRIDRSSGTFA-LVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEK 155
+L + PR R +G L+L PT EL + V E Q L R + + + GG + +E
Sbjct: 64 YLLDF-PR--RKAGPARILILTPTRELAMQVAEQAQALAKNTRLNI--FTITGGVQYQEH 118
Query: 156 AR-LRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 210
A L I+VATPG LL+++ F + W+I DEADR+L++GFG ++ +
Sbjct: 119 ADILATTQDIVVATPGRLLEYID-AERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 301 (111.0 bits), Expect = 9.1e-26, P = 9.1e-26
Identities = 67/213 (31%), Positives = 119/213 (55%)
Query: 52 ERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSS-- 109
ER G++ P+ +Q AIP+ L RDV+ A TG+GKT A++ P++ ++ P + +
Sbjct: 329 ERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETE 388
Query: 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATP 169
G +A+V+ PT EL + E K H + V ++GG + ++ ++ +G I++ATP
Sbjct: 389 GPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTS-IVGGQSIEEQGLKITQGCEIVIATP 447
Query: 170 GHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVS 229
G L+D L+ + L+ +++ DEADR++++GF ++ +LD + S N+ E E+
Sbjct: 448 GRLIDCLERRYAVLN-QCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEELD 506
Query: 230 NVK--RQNLLLSATLNEKVNHLTKISLETPVLI 260
K R + SAT+ V L + L PV++
Sbjct: 507 EKKIYRTTYMFSATMPPGVERLARKYLRNPVVV 539
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 293 (108.2 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 66/181 (36%), Positives = 104/181 (57%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F SLGL + + E+ G+ PT +Q QAIP +L GRD++ +A TGTGKT + P++
Sbjct: 3 FDSLGLSPDILRAVAEQ-GYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
HL + P AL+L PT EL + E ++ ++ I V GG + + +
Sbjct: 62 HLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY-SKYLNIRSLVVFGGVSINPQMM 120
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216
+LR G+ +LVATPG LLD L+H ++ + ++ DEADR+L++GF +I +L L +
Sbjct: 121 KLRGGVDVLVATPGRLLD-LEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPA 179
Query: 217 R 217
+
Sbjct: 180 K 180
Score = 164 (62.8 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 45/143 (31%), Positives = 74/143 (51%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 204
V GG + + + +LR G+ +LVATPG LLD L+H ++ + ++ DEADR+L++GF
Sbjct: 109 VFGGVSINPQMMKLRGGVDVLVATPGRLLD-LEHQNAVKLDQVEILVLDEADRMLDMGFI 167
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDE 264
+I +L L + KRQNLL SAT ++ + L + L P+ I +
Sbjct: 168 HDIRRVLTKLPA---------------KRQNLLFSATFSDDIKALAEKLLHNPLEIEVAR 212
Query: 265 KKFPEDKSNVHFGSLESDVKEEV 287
+ D+ H ++ K E+
Sbjct: 213 RNTASDQVTQHVHFVDKKRKREL 235
>WB|WBGene00008119 [details] [associations]
symbol:C46F11.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0000003 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268793 KO:K12835 GeneTree:ENSGT00610000086076
OMA:QEYANLM EMBL:Z81449 PIR:T19974 RefSeq:NP_497743.1
ProteinModelPortal:Q93382 SMR:Q93382 STRING:Q93382 PaxDb:Q93382
EnsemblMetazoa:C46F11.4 GeneID:175469 KEGG:cel:CELE_C46F11.4
UCSC:C46F11.4 CTD:175469 WormBase:C46F11.4 InParanoid:Q93382
NextBio:888300 Uniprot:Q93382
Length = 811
Score = 301 (111.0 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 68/180 (37%), Positives = 107/180 (59%)
Query: 35 CCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPI 94
C F+ D L + +R+ +E PT +QA AIP LSGRDVL A TG+GKT AYL P
Sbjct: 265 CSFAHFSFDKLLMEAIRKS-EYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPA 323
Query: 95 INHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKE 154
I H+ P + G A+++VPT EL + V++ +K + I P GGG++ ++
Sbjct: 324 IVHIMD-QPDLKAGEGPVAVIVVPTRELAIQVFQEAKKFCKVYN-INPICAYGGGSKWEQ 381
Query: 155 KARLR-KGISILVATPGHLLDHLKH-TSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 212
L+ +G ++V TPG ++D +K ++FL T +++FDEADR+ ++GF +++ I D
Sbjct: 382 SNELQNEGAEMVVCTPGRIIDLVKMGATNFLRTT--FLVFDEADRMFDMGFEAQVKSISD 439
Score = 163 (62.4 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 46/159 (28%), Positives = 82/159 (51%)
Query: 103 PRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLR-KG 161
P + G A+++VPT EL + V++ +K + I P GGG++ ++ L+ +G
Sbjct: 331 PDLKAGEGPVAVIVVPTRELAIQVFQEAKKFCKVYN-INPICAYGGGSKWEQSNELQNEG 389
Query: 162 ISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIAS 221
++V TPG ++D +K ++ +++FDEADR+ ++GF +++ I D +
Sbjct: 390 AEMVVCTPGRIIDLVKMGATNF-LRTTFLVFDEADRMFDMGFEAQVKSISDHV------- 441
Query: 222 IGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
RQ L+ SAT +KV L + +L PV I
Sbjct: 442 --------RPDRQCLMFSATFKQKVERLARDALVDPVRI 472
>WB|WBGene00017162 [details] [associations]
symbol:ddx-23 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0040021 "hermaphrodite germ-line sex determination"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
Uniprot:Q95QN2
Length = 730
Score = 300 (110.7 bits), Expect = 1.2e-25, P = 1.2e-25
Identities = 72/237 (30%), Positives = 131/237 (55%)
Query: 49 QLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRS 108
Q + +G+ PT +Q QAIP+ L RDV+ A TG+GKT A+L P++ + S P+++R
Sbjct: 314 QAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSL-PKMERQ 372
Query: 109 S----GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISI 164
G +A+++ PT EL + E K + I V+GG +R + +LR G+ +
Sbjct: 373 EHRDLGPYAIIMAPTRELAQQIEEETNKF-GKLLGIKTVSVIGGASREDQGMKLRMGVEV 431
Query: 165 LVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGE 224
++ATPG LLD L++ L+ ++I DEADR+L++GF +++++L+ + N+ +
Sbjct: 432 VIATPGRLLDVLENRYLLLN-QCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKKDTD 490
Query: 225 --GNEVSNVK--------RQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDK 271
NE + +K RQ ++ +AT++ + L + L P ++ + P ++
Sbjct: 491 EFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKPTER 547
>SGD|S000003570 [details] [associations]
symbol:HCA4 "DEAD box RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0005730 "nucleolus" evidence=IEA;IC]
[GO:0006364 "rRNA processing" evidence=IEA;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA;IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000003570
GO:GO:0005524 GO:GO:0005730 EMBL:BK006943 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 EMBL:U72149 EMBL:Z49308 EMBL:AY693118
PIR:S56805 RefSeq:NP_012501.1 ProteinModelPortal:P20448 SMR:P20448
DIP:DIP-6819N IntAct:P20448 MINT:MINT-620511 STRING:P20448
PaxDb:P20448 PeptideAtlas:P20448 EnsemblFungi:YJL033W GeneID:853419
KEGG:sce:YJL033W CYGD:YJL033w GeneTree:ENSGT00550000074980
NextBio:973942 Genevestigator:P20448 GermOnline:YJL033W
Uniprot:P20448
Length = 770
Score = 300 (110.7 bits), Expect = 1.3e-25, P = 1.3e-25
Identities = 80/225 (35%), Positives = 117/225 (52%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F L + LRE F T++QA +IPV L G DVL A TG+GKT+A+L P+I
Sbjct: 43 FKDLPISDPTLKGLRES-SFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIE 101
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L Y + G AL++ PT EL + +YE+L K+ + G V+GG + E
Sbjct: 102 KL--YREKWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSA-GLVIGGKDVKFELE 158
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216
R+ + I+IL+ TPG +L HL +NL+ ++ DEADR L++GF K ++ I+ L
Sbjct: 159 RISR-INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSP 217
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIG 261
RQ LL SAT ++ V L ++SL +G
Sbjct: 218 ---------------SRQTLLFSATQSQSVADLARLSLTDYKTVG 247
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 81/224 (36%), Positives = 120/224 (53%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F LGL L +Q R+ +G PT VQA IP IL GRD L A TG+GKT A++ P++
Sbjct: 4 FRELGLAPWLVEQARQ-MGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQ 62
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L S P G F LVL PT EL + E ++L + + V+GG + +
Sbjct: 63 VL-SEDPY-----GIFCLVLTPTRELAYQIAEQF-RVLGKPLGLKDCVVVGGLDMVAQAL 115
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELG---FGKEIEEILDI 213
L + +++ATPG L DHL+ +++F L++++ DEADR+LE G F ++E IL+
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEA 175
Query: 214 LGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETP 257
+ +R RQ LL SATL + +N L +++ P
Sbjct: 176 VPAR---------------RQTLLFSATLTDTLNELKSLAMNRP 204
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 292 (107.8 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 67/178 (37%), Positives = 107/178 (60%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+SLGL + + + E+ G+ P+ +Q QAIP +L+G+DV+ A TGTGKT + PI+
Sbjct: 3 FTSLGLSAPILKAIEEK-GYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L + P++ R++ AL+L PT EL + + + L R + V GG + +
Sbjct: 62 -LLAKGPKV-RANQVRALILTPTRELAAQIQDNVM-LYGRHLPLKSAVVFGGVKINPQMQ 118
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214
R+ KG ILVATPG L+D L + ++ L ++ DEADR+L++GF ++I +IL +L
Sbjct: 119 RMCKGADILVATPGRLMD-LYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLL 175
Score = 155 (59.6 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 43/118 (36%), Positives = 64/118 (54%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 204
V GG + + R+ KG ILVATPG L+D L + ++ L ++ DEADR+L++GF
Sbjct: 107 VFGGVKINPQMQRMCKGADILVATPGRLMD-LYNQNAVKFDQLEILVLDEADRMLDMGFI 165
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGL 262
++I +IL +L KRQNLL SAT + ++ L K + PV I +
Sbjct: 166 RDIHKILKLLPE---------------KRQNLLFSATFSTEIRELAKGLVNNPVEISV 208
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 292 (107.8 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 67/178 (37%), Positives = 107/178 (60%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+SLGL + + + E+ G+ P+ +Q QAIP +L+G+DV+ A TGTGKT + PI+
Sbjct: 3 FTSLGLSAPILKAIEEK-GYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L + P++ R++ AL+L PT EL + + + L R + V GG + +
Sbjct: 62 -LLAKGPKV-RANQVRALILTPTRELAAQIQDNVM-LYGRHLPLKSAVVFGGVKINPQMQ 118
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214
R+ KG ILVATPG L+D L + ++ L ++ DEADR+L++GF ++I +IL +L
Sbjct: 119 RMCKGADILVATPGRLMD-LYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLL 175
Score = 155 (59.6 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 43/118 (36%), Positives = 64/118 (54%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 204
V GG + + R+ KG ILVATPG L+D L + ++ L ++ DEADR+L++GF
Sbjct: 107 VFGGVKINPQMQRMCKGADILVATPGRLMD-LYNQNAVKFDQLEILVLDEADRMLDMGFI 165
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGL 262
++I +IL +L KRQNLL SAT + ++ L K + PV I +
Sbjct: 166 RDIHKILKLLPE---------------KRQNLLFSATFSTEIRELAKGLVNNPVEISV 208
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 290 (107.1 bits), Expect = 1.5e-25, P = 1.5e-25
Identities = 70/182 (38%), Positives = 105/182 (57%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F LGL + L + + LGFE PT +Q +AIP+IL G +++ A TGTGKT AYL P++
Sbjct: 4 FKKLGLITPLLKAVND-LGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQ 62
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
RI R L++ PT EL L V + + KL + V + GG + +
Sbjct: 63 -------RIQRGKKAQVLIVTPTRELALQVADEVAKLGKYLK--VRALAVYGGQAIERQI 113
Query: 157 R-LRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 215
R LR+G+ ++V TPG +LDH+ +F ++ +I DEAD +L++GF +IE IL+ L
Sbjct: 114 RGLRQGVEVIVGTPGRILDHIGR-KTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLT 172
Query: 216 SR 217
+R
Sbjct: 173 NR 174
Score = 140 (54.3 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 61/221 (27%), Positives = 106/221 (47%)
Query: 103 PRIDR-SSGTFALVLVPTSELCLLVYEILQKLLHRFRWI-VPGYVMGGGNRSKEKAR-LR 159
P + R G A VL+ T L + ++ ++ +++ V + GG + + R LR
Sbjct: 59 PVLQRIQRGKKAQVLIVTPTRELAL-QVADEVAKLGKYLKVRALAVYGGQAIERQIRGLR 117
Query: 160 KGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNI 219
+G+ ++V TPG +LDH+ +F ++ +I DEAD +L++GF +IE IL+ L +R
Sbjct: 118 QGVEVIVGTPGRILDHIGR-KTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNR-- 174
Query: 220 ASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISL---ETPVLIGLDEKKFPEDKSNVHF 276
+Q LL SATL + + K L +T L+G EK P + V++
Sbjct: 175 -------------QQTLLFSATLPAPIKTIIKKFLGGYKTVKLVGR-EKTVPAIRQ-VYY 219
Query: 277 GSLESD-VKEEVEHPNTTLSSSTEDFMLPAKLVQRYVKGIS 316
E++ ++ V N+ L F K V V+ ++
Sbjct: 220 ELPETEKIEGLVSILNSELPIQAIVFCRTKKRVDEVVEQLN 260
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 290 (107.1 bits), Expect = 1.5e-25, P = 1.5e-25
Identities = 70/182 (38%), Positives = 105/182 (57%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F LGL + L + + LGFE PT +Q +AIP+IL G +++ A TGTGKT AYL P++
Sbjct: 4 FKKLGLITPLLKAVND-LGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQ 62
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
RI R L++ PT EL L V + + KL + V + GG + +
Sbjct: 63 -------RIQRGKKAQVLIVTPTRELALQVADEVAKLGKYLK--VRALAVYGGQAIERQI 113
Query: 157 R-LRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 215
R LR+G+ ++V TPG +LDH+ +F ++ +I DEAD +L++GF +IE IL+ L
Sbjct: 114 RGLRQGVEVIVGTPGRILDHIGR-KTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLT 172
Query: 216 SR 217
+R
Sbjct: 173 NR 174
Score = 140 (54.3 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 61/221 (27%), Positives = 106/221 (47%)
Query: 103 PRIDR-SSGTFALVLVPTSELCLLVYEILQKLLHRFRWI-VPGYVMGGGNRSKEKAR-LR 159
P + R G A VL+ T L + ++ ++ +++ V + GG + + R LR
Sbjct: 59 PVLQRIQRGKKAQVLIVTPTRELAL-QVADEVAKLGKYLKVRALAVYGGQAIERQIRGLR 117
Query: 160 KGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNI 219
+G+ ++V TPG +LDH+ +F ++ +I DEAD +L++GF +IE IL+ L +R
Sbjct: 118 QGVEVIVGTPGRILDHIGR-KTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNR-- 174
Query: 220 ASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISL---ETPVLIGLDEKKFPEDKSNVHF 276
+Q LL SATL + + K L +T L+G EK P + V++
Sbjct: 175 -------------QQTLLFSATLPAPIKTIIKKFLGGYKTVKLVGR-EKTVPAIRQ-VYY 219
Query: 277 GSLESD-VKEEVEHPNTTLSSSTEDFMLPAKLVQRYVKGIS 316
E++ ++ V N+ L F K V V+ ++
Sbjct: 220 ELPETEKIEGLVSILNSELPIQAIVFCRTKKRVDEVVEQLN 260
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 290 (107.1 bits), Expect = 1.6e-25, P = 1.6e-25
Identities = 83/230 (36%), Positives = 121/230 (52%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+ LGL + L +L E L + PT +QA+AIP + +GRD++ A TG+GKT + P++
Sbjct: 10 FTELGLITPLLARLAE-LEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQ 68
Query: 97 HL-QSYSPRIDRSSGTFA--LVLVPTSELCLLVYEILQKLLHRFRWIVPGY-VMGGGNRS 152
L + S S G F LVLVPT EL V + ++ F + V GG + +
Sbjct: 69 KLREDISSGSKNSKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSVN 128
Query: 153 KEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 212
+ LR G+ ILVATPG LLD + + L ++ ++ DEADR+L LGF +E+ +L
Sbjct: 129 IQMLALRGGVDILVATPGRLLDLISSNAIKLD-KVKTLVLDEADRMLSLGFTEELTALLA 187
Query: 213 ILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGL 262
+ K+Q LL SAT E+V LT+ L P+ I L
Sbjct: 188 LTPK---------------KKQTLLFSATFPEQVTTLTQELLNNPIEIQL 222
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 299 (110.3 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 75/230 (32%), Positives = 123/230 (53%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F S+ L + L +GF PT +Q++ IP+ L G+DV+ A TG+GKT A++ PI+
Sbjct: 257 FQSMSLSRPILRGLTS-VGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPILE 315
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L Y P+ +S ++L PT EL + + + KL I +GG + +++
Sbjct: 316 RLL-YRPKKVPTSRV--VILAPTRELAIQCHAVATKLASHTD-IKFCLAVGGLSLKVQES 371
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216
LR +++ATPG +DH+++++SF + ++ DEADR+LE GF E+ EIL L
Sbjct: 372 ELRLRPDVIIATPGRFIDHMRNSASFAVDTVEILVLDEADRMLEDGFADELNEILTTLPK 431
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKK 266
RQ +L SAT+ V++L ++ L PV + +D +K
Sbjct: 432 ---------------SRQTMLFSATMTSSVDNLIRVGLNKPVRLMVDSQK 466
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 291 (107.5 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 72/176 (40%), Positives = 106/176 (60%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F LG+ T LRE G T +Q +AIPVILSG+D++ A TGTGKT+A++ PI
Sbjct: 7 FLELGISETFNHTLREN-GITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPI-- 63
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L+ P SS AL++ PT EL L + ++K+L + I + GG + +++
Sbjct: 64 -LEKIDPE---SSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLR 119
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 212
+L+ I+VATPG LLDH++ + L +NL I+ DEAD++L GF +IE+ILD
Sbjct: 120 KLKGNTHIVVATPGRLLDHIRRETIDL-SNLSTIVLDEADQMLYFGFLYDIEDILD 174
Score = 181 (68.8 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 55/168 (32%), Positives = 90/168 (53%)
Query: 104 RID-RSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGI 162
+ID SS AL++ PT EL L + ++K+L + I + GG + +++ +L+
Sbjct: 66 KIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125
Query: 163 SILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASI 222
I+VATPG LLDH++ + L +NL I+ DEAD++L GF +IE+ILD
Sbjct: 126 HIVVATPGRLLDHIRRETIDL-SNLSTIVLDEADQMLYFGFLYDIEDILD---------- 174
Query: 223 GEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPED 270
E K Q +L SAT+ + + L K ++ P +I + ++ D
Sbjct: 175 ----ETPGSK-QTMLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVD 217
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 291 (107.5 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 72/176 (40%), Positives = 106/176 (60%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F LG+ T LRE G T +Q +AIPVILSG+D++ A TGTGKT+A++ PI
Sbjct: 7 FLELGISETFNHTLREN-GITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPI-- 63
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L+ P SS AL++ PT EL L + ++K+L + I + GG + +++
Sbjct: 64 -LEKIDPE---SSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLR 119
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 212
+L+ I+VATPG LLDH++ + L +NL I+ DEAD++L GF +IE+ILD
Sbjct: 120 KLKGNTHIVVATPGRLLDHIRRETIDL-SNLSTIVLDEADQMLYFGFLYDIEDILD 174
Score = 181 (68.8 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 55/168 (32%), Positives = 90/168 (53%)
Query: 104 RID-RSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGI 162
+ID SS AL++ PT EL L + ++K+L + I + GG + +++ +L+
Sbjct: 66 KIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125
Query: 163 SILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASI 222
I+VATPG LLDH++ + L +NL I+ DEAD++L GF +IE+ILD
Sbjct: 126 HIVVATPGRLLDHIRRETIDL-SNLSTIVLDEADQMLYFGFLYDIEDILD---------- 174
Query: 223 GEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPED 270
E K Q +L SAT+ + + L K ++ P +I + ++ D
Sbjct: 175 ----ETPGSK-QTMLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVD 217
>FB|FBgn0032690 [details] [associations]
symbol:CG10333 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5
snRNP" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
GO:GO:0022008 GO:GO:0005682 GO:GO:0003676 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
OMA:PIRNWKE FlyBase:FBgn0032690 EMBL:BT021222 RefSeq:NP_609888.2
UniGene:Dm.456 SMR:Q9VJ74 STRING:Q9VJ74 EnsemblMetazoa:FBtr0081072
GeneID:35112 KEGG:dme:Dmel_CG10333 UCSC:CG10333-RA
InParanoid:Q9VJ74 GenomeRNAi:35112 NextBio:791924 Uniprot:Q9VJ74
Length = 822
Score = 299 (110.3 bits), Expect = 1.9e-25, P = 1.9e-25
Identities = 80/264 (30%), Positives = 147/264 (55%)
Query: 41 GLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQS 100
G + D + +++G++ PT +Q QAIP+ L RD++ A TG+GKT+A+L P+++ +QS
Sbjct: 400 GFPKEIIDII-DKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQS 458
Query: 101 YSPRIDR----SSGTFALVLVPTSELCLLVYEILQKLLHRF--RWIVPGYVMGGGNRSKE 154
P+I+R G +A+++ PT EL + E K R +V V+GG +R ++
Sbjct: 459 L-PKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVV---VVGGLSREEQ 514
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214
RLR G I++ATPG L+D L++ L+ +I+ DEADR++++GF ++++IL+ +
Sbjct: 515 GFRLRLGCEIVIATPGRLIDVLENRYLVLN-QCTYIVLDEADRMIDMGFEPDVQKILEYM 573
Query: 215 GSRNIASIGEGNE-----VSN--VK---RQNLLLSATLNEKVNHLTKISLETPVLIGLDE 264
N+ E E + N K RQ ++ +AT+ V L + L P + +
Sbjct: 574 PVTNLKPDTEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGS 633
Query: 265 KKFPEDKSN-VHFGSLESDVKEEV 287
P +++ + + E+D ++++
Sbjct: 634 VGKPTERTEQIVYMMGENDKRKKL 657
>GENEDB_PFALCIPARUM|MAL7P1.113 [details] [associations]
symbol:MAL7P1.113 "DEAD box helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0003723
"RNA binding" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AL844506 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
InterPro:IPR025313 Pfam:PF13959 KO:K01509 RefSeq:XP_001349115.1
ProteinModelPortal:Q8IBN8 EnsemblProtists:MAL7P1.113:mRNA
GeneID:2654935 KEGG:pfa:MAL7P1.113 EuPathDB:PlasmoDB:PF3D7_0721300
OMA:NDSHNEL ProtClustDB:CLSZ2514714 Uniprot:Q8IBN8
Length = 899
Score = 299 (110.3 bits), Expect = 2.3e-25, P = 2.3e-25
Identities = 80/230 (34%), Positives = 121/230 (52%)
Query: 29 KEIF-ASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKT 87
K IF C L +L + L E+ F T +Q +IP+ D+ + + TG+GKT
Sbjct: 166 KNIFDGKFCDLKYILSESLINTL-EKNEFIKMTSIQKMSIPLFFKPNDIFLKSMTGSGKT 224
Query: 88 VAYLAPIINHLQSYSPR--IDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYV 145
+ Y P I + + + I R G F LVL PT EL + + + L + +IV +
Sbjct: 225 LCYAIPSIEKILNMKEKVKITRDMGIFVLVLSPTRELAIQINNLFCILTKPYPYIVASCI 284
Query: 146 MGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGK 205
GG + EK RL+KGISIL TPG LLDHL++T S T L+ +I DEAD+I+ LG
Sbjct: 285 TGGEKKKSEKNRLKKGISILTCTPGRLLDHLENTKSLKLTFLKMVILDEADKIIYLGTQD 344
Query: 206 EIEEILDILGSRNIASIGEGNEVSNVKR--QNLLLSATLNEKVNHLTKIS 253
+I+ I D++ R I E ++V K+ +N +L + ++ + IS
Sbjct: 345 KIKLIYDMI--RKIKQ-EEFSKVHKKKKKEENEVLDHINDTNMSDMNNIS 391
>UNIPROTKB|Q8IBN8 [details] [associations]
symbol:MAL7P1.113 "DEAD box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AL844506 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
InterPro:IPR025313 Pfam:PF13959 KO:K01509 RefSeq:XP_001349115.1
ProteinModelPortal:Q8IBN8 EnsemblProtists:MAL7P1.113:mRNA
GeneID:2654935 KEGG:pfa:MAL7P1.113 EuPathDB:PlasmoDB:PF3D7_0721300
OMA:NDSHNEL ProtClustDB:CLSZ2514714 Uniprot:Q8IBN8
Length = 899
Score = 299 (110.3 bits), Expect = 2.3e-25, P = 2.3e-25
Identities = 80/230 (34%), Positives = 121/230 (52%)
Query: 29 KEIF-ASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKT 87
K IF C L +L + L E+ F T +Q +IP+ D+ + + TG+GKT
Sbjct: 166 KNIFDGKFCDLKYILSESLINTL-EKNEFIKMTSIQKMSIPLFFKPNDIFLKSMTGSGKT 224
Query: 88 VAYLAPIINHLQSYSPR--IDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYV 145
+ Y P I + + + I R G F LVL PT EL + + + L + +IV +
Sbjct: 225 LCYAIPSIEKILNMKEKVKITRDMGIFVLVLSPTRELAIQINNLFCILTKPYPYIVASCI 284
Query: 146 MGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGK 205
GG + EK RL+KGISIL TPG LLDHL++T S T L+ +I DEAD+I+ LG
Sbjct: 285 TGGEKKKSEKNRLKKGISILTCTPGRLLDHLENTKSLKLTFLKMVILDEADKIIYLGTQD 344
Query: 206 EIEEILDILGSRNIASIGEGNEVSNVKR--QNLLLSATLNEKVNHLTKIS 253
+I+ I D++ R I E ++V K+ +N +L + ++ + IS
Sbjct: 345 KIKLIYDMI--RKIKQ-EEFSKVHKKKKKEENEVLDHINDTNMSDMNNIS 391
>ASPGD|ASPL0000062195 [details] [associations]
symbol:AN10125 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
Length = 814
Score = 298 (110.0 bits), Expect = 2.4e-25, P = 2.4e-25
Identities = 72/213 (33%), Positives = 119/213 (55%)
Query: 54 LGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 113
+ F PT +Q + IPV L G+D++ +A TG+GKT A++ PI+ L + PR +S
Sbjct: 316 VNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLL-FRPRKVPTSRV-- 372
Query: 114 LVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLL 173
+L+PT EL + Y + KL + I ++GG + +++ L+K +++ATPG +
Sbjct: 373 AILMPTRELAVQCYNVATKLA-TYTDITFCQLVGGFSLREQENVLKKRPDVIIATPGRFI 431
Query: 174 DHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKR 233
DH+++++SF L ++ DEADR+LE GF E+ EIL + R
Sbjct: 432 DHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPK---------------SR 476
Query: 234 QNLLLSATLNEKVNHLTKISLETPVLIGLDEKK 266
Q +L SAT+ + V+ L ++ L PV + +D KK
Sbjct: 477 QTMLFSATMTDSVDKLIRVGLNRPVRLMVDTKK 509
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 291 (107.5 bits), Expect = 2.6e-25, P = 2.6e-25
Identities = 68/179 (37%), Positives = 113/179 (63%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
FS LGL S L + E LG+++PT +Q QAIP IL+G++VL A TGTGKT +++ P++
Sbjct: 3 FSQLGLHSALVKAVTE-LGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLL- 60
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
H + +P+I R +++L PT EL L V + + + ++ + + GG + + +K
Sbjct: 61 HRFADAPKI-RPKRVRSIILTPTRELALQVEQNINQYA-KYLPLTAMAMYGGVDAAPQKK 118
Query: 157 RLRKGISILVATPGHLLD-HLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214
RL +G+ +LVATPG LLD + + F ++ ++ DEADR+L++GF ++I I++ L
Sbjct: 119 RLIEGVDLLVATPGRLLDMYTQRAIRFDEVSV--LVLDEADRMLDMGFIEDINNIIEKL 175
Score = 150 (57.9 bits), Expect = 7.6e-08, P = 7.6e-08
Identities = 45/138 (32%), Positives = 75/138 (54%)
Query: 147 GGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 206
GG + + +K RL +G+ +LVATPG LLD + + + ++ DEADR+L++GF
Sbjct: 109 GGVDAAPQKKRLIEGVDLLVATPGRLLD-MYTQRAIRFDEVSVLVLDEADRMLDMGF--- 164
Query: 207 IEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKK 266
IE+I +I I + E +RQNLL SATL+++V L K ++ + I + K
Sbjct: 165 IEDINNI-----IEKLPE-------QRQNLLFSATLSKQVKALAKTAIPDAIEIEISRKN 212
Query: 267 FPEDKSNVHFGSLESDVK 284
+ + +++ D K
Sbjct: 213 AASTQIDQWLTTVDKDRK 230
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 291 (107.5 bits), Expect = 2.6e-25, P = 2.6e-25
Identities = 68/179 (37%), Positives = 113/179 (63%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
FS LGL S L + E LG+++PT +Q QAIP IL+G++VL A TGTGKT +++ P++
Sbjct: 3 FSQLGLHSALVKAVTE-LGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLL- 60
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
H + +P+I R +++L PT EL L V + + + ++ + + GG + + +K
Sbjct: 61 HRFADAPKI-RPKRVRSIILTPTRELALQVEQNINQYA-KYLPLTAMAMYGGVDAAPQKK 118
Query: 157 RLRKGISILVATPGHLLD-HLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214
RL +G+ +LVATPG LLD + + F ++ ++ DEADR+L++GF ++I I++ L
Sbjct: 119 RLIEGVDLLVATPGRLLDMYTQRAIRFDEVSV--LVLDEADRMLDMGFIEDINNIIEKL 175
Score = 150 (57.9 bits), Expect = 7.6e-08, P = 7.6e-08
Identities = 45/138 (32%), Positives = 75/138 (54%)
Query: 147 GGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 206
GG + + +K RL +G+ +LVATPG LLD + + + ++ DEADR+L++GF
Sbjct: 109 GGVDAAPQKKRLIEGVDLLVATPGRLLD-MYTQRAIRFDEVSVLVLDEADRMLDMGF--- 164
Query: 207 IEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKK 266
IE+I +I I + E +RQNLL SATL+++V L K ++ + I + K
Sbjct: 165 IEDINNI-----IEKLPE-------QRQNLLFSATLSKQVKALAKTAIPDAIEIEISRKN 212
Query: 267 FPEDKSNVHFGSLESDVK 284
+ + +++ D K
Sbjct: 213 AASTQIDQWLTTVDKDRK 230
>SGD|S000000441 [details] [associations]
symbol:PRP5 "RNA helicase in the DEAD-box family"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0000348 "mRNA branch
site recognition" evidence=TAS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000000441 GO:GO:0005524
GO:GO:0005681 EMBL:BK006936 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008186
GeneTree:ENSGT00610000086076 KO:K12811 HOGENOM:HOG000007229
GO:GO:0000348 OMA:SLVIIYN OrthoDB:EOG40CMR1 EMBL:M33191 EMBL:Z36106
EMBL:AY692817 PIR:A35791 RefSeq:NP_009796.1
ProteinModelPortal:P21372 SMR:P21372 DIP:DIP-88N IntAct:P21372
MINT:MINT-403988 STRING:P21372 PaxDb:P21372 EnsemblFungi:YBR237W
GeneID:852539 KEGG:sce:YBR237W CYGD:YBR237w NextBio:971604
Genevestigator:P21372 GermOnline:YBR237W Uniprot:P21372
Length = 849
Score = 298 (110.0 bits), Expect = 2.6e-25, P = 2.6e-25
Identities = 83/273 (30%), Positives = 140/273 (51%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
+S LGL + + E+L F + T +Q+QA+P I+SGRDV+ + TG+GKT++YL P++
Sbjct: 257 WSQLGLSTDTMVLITEKLHFGSLTPIQSQALPAIMSGRDVIGISKTGSGKTISYLLPLLR 316
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
+++ P +G L+L PT EL L ++E + K I GG K+
Sbjct: 317 QVKAQRPLSKHETGPMGLILAPTRELALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQIT 376
Query: 157 RLRKGISILVATPGHLLDHLK-HTSSFLHTN-LRWIIFDEADRILELGFGKEIEEILDIL 214
L++G I+VATPG +D L + L T + +++ DEADR+ +LGF +I +I+ +
Sbjct: 377 DLKRGTEIVVATPGRFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMKTV 436
Query: 215 GSRN---IASIGEGNEVSN--VKRQNLLLSATLNEK--VNHLTKISLETPVLIGLDEKKF 267
+ S N++ + V+ + +S T+N K VN K + +++KF
Sbjct: 437 RPDKQCVLFSATFPNKLRSFAVRVLHSPISITINSKGMVNENVKQKFR---ICHSEDEKF 493
Query: 268 PEDKSNVHFGSLESDVKEEVEHPNTTLSSSTED 300
+H S+ +EV+ N SS E+
Sbjct: 494 DNLVQLIHE---RSEFFDEVQSENDGQSSDVEE 523
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 289 (106.8 bits), Expect = 3.4e-25, P = 3.4e-25
Identities = 80/230 (34%), Positives = 122/230 (53%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+ LG+ L ERLG++ P+K+QA+A+P L G+DV+ A TG+GKT A+ PI+
Sbjct: 11 FAELGVREELVKAC-ERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQ 69
Query: 97 HLQSY----SPRIDR--SSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGN 150
L Y P+ R FA VL PT EL + + E + L + ++GG +
Sbjct: 70 ALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADIS-LRCAVLVGGID 128
Query: 151 RSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 210
R ++ L K ++VATPG L DH+ T F +L++++ DEADR+L F K + +I
Sbjct: 129 RMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQI 188
Query: 211 LDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
L+ E+ ++R+ L SAT+ +KV L + L PV I
Sbjct: 189 LE--------------EIP-LERKTFLFSATMTKKVRKLQRACLRNPVKI 223
>UNIPROTKB|F1NYX0 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
ArrayExpress:F1NYX0 Uniprot:F1NYX0
Length = 482
Score = 290 (107.1 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 81/224 (36%), Positives = 120/224 (53%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F LGL L +Q R+ +G PT VQA IP IL GRD L A TG+GKT A++ P++
Sbjct: 7 FRELGLAPWLVEQARQ-MGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQ 65
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L S P G F LVL PT EL + E ++L + + V+GG + +
Sbjct: 66 VL-SEDPY-----GIFCLVLTPTRELAYQIAEQF-RVLGKPLGLKDCVVVGGLDMVAQAL 118
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELG---FGKEIEEILDI 213
L + +++ATPG L DHL+ +++F L++++ DEADR+LE G F ++E IL+
Sbjct: 119 ELSRKPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEA 178
Query: 214 LGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETP 257
+ +R RQ LL SATL + +N L +++ P
Sbjct: 179 VPAR---------------RQTLLFSATLTDTLNELKSLAMNRP 207
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 275 (101.9 bits), Expect = 5.0e-25, Sum P(2) = 5.0e-25
Identities = 79/225 (35%), Positives = 116/225 (51%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+SLGL L + E G+ PT VQ +AIP +L GRD++V A TGTGKT + PI+
Sbjct: 3 FASLGLSEALVGAI-EAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 97 HL-QSYSPRIDRSSGTF---ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRS 152
L + P + G LVL PT EL V++ KL R V + GG +
Sbjct: 62 RLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSF-KLYARDLKFVSACIFGGVGMN 120
Query: 153 KEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 212
+ + +G+ +LVA PG LLD L S +++ ++ DEADR+L++GF +++++L
Sbjct: 121 PQVQAMARGVDVLVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLA 179
Query: 213 ILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETP 257
L + KRQNLL SAT ++ + L L P
Sbjct: 180 RLPA---------------KRQNLLFSATFSKDITDLAGKLLHNP 209
Score = 41 (19.5 bits), Expect = 5.0e-25, Sum P(2) = 5.0e-25
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 267 FPEDKSNVHFGSLESDVKEEVEHPNTTLSSSTED-FMLPA 305
F +D +++ L + + EV PNTT+ + F LPA
Sbjct: 194 FSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPA 233
>FB|FBgn0030855 [details] [associations]
symbol:CG5800 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007526 "larval somatic muscle development"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0022008 EMBL:AE014298
GO:GO:0006200 GO:GO:0003723 GO:GO:0007526 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
KO:K14776 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 OMA:ADKVIEP HSSP:P10081 EMBL:AY119628
RefSeq:NP_573230.1 UniGene:Dm.13464 SMR:Q9VX34 STRING:Q9VX34
EnsemblMetazoa:FBtr0074453 GeneID:32742 KEGG:dme:Dmel_CG5800
UCSC:CG5800-RA FlyBase:FBgn0030855 InParanoid:Q9VX34
OrthoDB:EOG4MCVFH GenomeRNAi:32742 NextBio:780142 Uniprot:Q9VX34
Length = 826
Score = 295 (108.9 bits), Expect = 5.2e-25, P = 5.2e-25
Identities = 71/206 (34%), Positives = 113/206 (54%)
Query: 56 FEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALV 115
F PT+VQ +I L G+DVL A TG+GKT+A+L P++ HL + + R+ G A++
Sbjct: 92 FVHPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVLEHL--FMNKWSRTDGVGAII 149
Query: 116 LVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDH 175
+ PT EL ++E L+K+ + G ++GG N E+ R+ + +IL+ TPG LL H
Sbjct: 150 ISPTRELAYQIFETLKKV-GKHHDFSAGLIIGGKNLKFERTRMDQ-CNILICTPGRLLQH 207
Query: 176 LKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQN 235
+ F + + ++ DEADR L++GF K + I++ N + RQ
Sbjct: 208 MDENPLFNTSTMEMLVLDEADRCLDMGFQKTLNSIIE-----NFPPV----------RQT 252
Query: 236 LLLSATLNEKVNHLTKISLETPVLIG 261
LL SAT V L +++L+ PV +G
Sbjct: 253 LLFSATQTNTVQDLARLNLKDPVYVG 278
>CGD|CAL0005725 [details] [associations]
symbol:PRP5 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 295 (108.9 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 77/227 (33%), Positives = 121/227 (53%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
+S L L + L + ++L FE P+ +Q+QA+P ILSGRDV+ A TG+GKT++Y+ P++
Sbjct: 295 WSHLALPTNLSSVIHDKLKFEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLR 354
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
H+Q D + G L+L PT EL L + + + R + GG + +
Sbjct: 355 HIQDQQFSKD-NQGPIGLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQIN 413
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILDI 213
L+KG+ I+V TPG ++D L S + NL+ +++ DEADR+ +LGF ++ +IL
Sbjct: 414 ELKKGVEIIVGTPGRVIDLLAANSGRV-LNLKRCTFVVLDEADRMFDLGFEPQVNKILTQ 472
Query: 214 LGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
+ RQ +L SAT K+ L K L PV+I
Sbjct: 473 I---------------RPDRQTVLFSATFPRKMETLAKQILTDPVVI 504
>UNIPROTKB|Q5ADL0 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 295 (108.9 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 77/227 (33%), Positives = 121/227 (53%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
+S L L + L + ++L FE P+ +Q+QA+P ILSGRDV+ A TG+GKT++Y+ P++
Sbjct: 295 WSHLALPTNLSSVIHDKLKFEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLR 354
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
H+Q D + G L+L PT EL L + + + R + GG + +
Sbjct: 355 HIQDQQFSKD-NQGPIGLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQIN 413
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILDI 213
L+KG+ I+V TPG ++D L S + NL+ +++ DEADR+ +LGF ++ +IL
Sbjct: 414 ELKKGVEIIVGTPGRVIDLLAANSGRV-LNLKRCTFVVLDEADRMFDLGFEPQVNKILTQ 472
Query: 214 LGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
+ RQ +L SAT K+ L K L PV+I
Sbjct: 473 I---------------RPDRQTVLFSATFPRKMETLAKQILTDPVVI 504
>UNIPROTKB|F8VRX4 [details] [associations]
symbol:DDX54 "ATP-dependent RNA helicase DDX54"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC089999 HGNC:HGNC:20084 ChiTaRS:DDX54 IPI:IPI01022245
ProteinModelPortal:F8VRX4 SMR:F8VRX4 Ensembl:ENST00000552375
ArrayExpress:F8VRX4 Bgee:F8VRX4 Uniprot:F8VRX4
Length = 208
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 60/175 (34%), Positives = 105/175 (60%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F S+GL + + ++ G++ PT +Q + IPVIL G+DV+ A TG+GKT +L P+
Sbjct: 15 FQSMGLSYPVFKGIMKK-GYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFE 73
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L+++S + +G AL+L PT EL L + ++L +F + ++GG + A
Sbjct: 74 RLKTHSAQ----TGARALILSPTRELALQTLKFTKEL-GKFTGLKTALILGGDRMEDQFA 128
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 211
L + I++ATPG L+ H+ S ++ +++FDEADR+ E+GF ++++EI+
Sbjct: 129 ALHENPDIIIATPGRLV-HVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEII 182
>UNIPROTKB|F1S7D9 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
Length = 483
Score = 288 (106.4 bits), Expect = 6.2e-25, P = 6.2e-25
Identities = 81/224 (36%), Positives = 119/224 (53%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+ LGL S L +Q R+ LG + PT VQ IP IL GRD L A TG+GKT A++ PI+
Sbjct: 4 FAELGLSSWLVEQCRQ-LGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQ 62
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L S P G F LVL PT EL + E ++L + + ++GG + +
Sbjct: 63 KL-SEDPY-----GIFCLVLTPTRELAYQIAEQF-RVLGKPLGLKDCIIVGGMDMVAQAL 115
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELG---FGKEIEEILDI 213
L + +++ATPG L DHL+ +++F +R+++ DEADR+LE G F ++E IL
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAA 175
Query: 214 LGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETP 257
+ +R RQ LL SATL + + L ++ P
Sbjct: 176 VPAR---------------RQTLLFSATLTDTLRELQSLATNQP 204
>FB|FBgn0263231 [details] [associations]
symbol:bel "belle" species:7227 "Drosophila melanogaster"
[GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0016442 "RNA-induced silencing complex" evidence=IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
Length = 798
Score = 294 (108.6 bits), Expect = 6.2e-25, P = 6.2e-25
Identities = 74/216 (34%), Positives = 116/216 (53%)
Query: 56 FEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHL---------QSYSPRID 106
++ PT VQ AIP+I++GRD++ A TG+GKT A+L PI+N + QS
Sbjct: 315 YDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSR 374
Query: 107 RSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILV 166
R LVL PT EL ++E +K +R R + P + GG N S++ L +G ++V
Sbjct: 375 RKQYPLGLVLAPTRELATQIFEEAKKFAYRSR-MRPAVLYGGNNTSEQMRELDRGCHLIV 433
Query: 167 ATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGN 226
ATPG L D + L N+R+++ DEADR+L++GF +I I++ L N+ G+
Sbjct: 434 ATPGRLEDMITRGKVGLE-NIRFLVLDEADRMLDMGFEPQIRRIVEQL---NMPPTGQ-- 487
Query: 227 EVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGL 262
RQ L+ SAT +++ L L + + +
Sbjct: 488 ------RQTLMFSATFPKQIQELASDFLSNYIFLAV 517
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 291 (107.5 bits), Expect = 6.3e-25, P = 6.3e-25
Identities = 81/233 (34%), Positives = 128/233 (54%)
Query: 43 DSTLCDQLRE---RLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQ 99
D+ D + E +LGF PT +QAQ P+ L GRD++ A TG+GKT+AYL P + H+
Sbjct: 169 DANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHV- 227
Query: 100 SYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLR 159
S PR+ + G L+L PT EL + + E +K R + + GG + + LR
Sbjct: 228 SAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLR-SGVRSTCIYGGAPKGPQIRDLR 286
Query: 160 KGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILD-ILG 215
+G+ I++ATPG L+D L+ HTNL+ +++ DEADR+L++GF +I +I+ I
Sbjct: 287 RGVEIVIATPGRLIDMLECQ----HTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 342
Query: 216 SRN--IASIGEGNEVSNVKRQNL------LLSAT---LNEKVNHLTKISLETP 257
R + S EV + RQ L ++ +T N+ +N + +I + TP
Sbjct: 343 DRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEI-VPTP 394
>FB|FBgn0036104 [details] [associations]
symbol:CG6418 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
NextBio:812543 Uniprot:Q9VTC1
Length = 791
Score = 272 (100.8 bits), Expect = 6.8e-25, Sum P(2) = 6.8e-25
Identities = 60/175 (34%), Positives = 99/175 (56%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F G D L +R + + PT +QAQA+P LSGRD++ A TG+GKT A++ P++
Sbjct: 271 FGHFGFDEQLIKAVR-KAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLM 329
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRW-IVPGYVMGGGNRSKEK 155
H+ ++ G L+L PT EL L +Y +K + +V Y GGG++ ++
Sbjct: 330 HVMDQK-QLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCY--GGGSKWEQS 386
Query: 156 ARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 210
L +G I+VATPG ++D +K ++ L + +++ DEADR+ +GF ++ I
Sbjct: 387 KALEQGAEIIVATPGRMIDMVKMKATNLR-RVTFLVLDEADRMFHMGFEPQVRSI 440
Score = 130 (50.8 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 35/114 (30%), Positives = 59/114 (51%)
Query: 147 GGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 206
GGG++ ++ L +G I+VATPG ++D +K ++ L + +++ DEADR+ +GF +
Sbjct: 378 GGGSKWEQSKALEQGAEIIVATPGRMIDMVKMKATNLR-RVTFLVLDEADRMFHMGFEPQ 436
Query: 207 IEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
+ I N V RQ L+ SAT +++ L + L PV I
Sbjct: 437 VRSIC--------------NHV-RPDRQCLMFSATFKKRIERLARDVLSDPVRI 475
Score = 47 (21.6 bits), Expect = 6.8e-25, Sum P(2) = 6.8e-25
Identities = 23/76 (30%), Positives = 33/76 (43%)
Query: 203 FGKEIEEIL-DILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVN----HLTKISLETP 257
F K IE + D+L G+ NE + Q++ + +K N HL K E
Sbjct: 457 FKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNWLLCHLVKFLSEGS 516
Query: 258 VLIGLDEKKFPEDKSN 273
VLI + +K E SN
Sbjct: 517 VLIFVTKKVDAETVSN 532
>ZFIN|ZDB-GENE-071022-2 [details] [associations]
symbol:ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
10" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-071022-2 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 EMBL:CR450711 IPI:IPI00898518
Ensembl:ENSDART00000125785 ArrayExpress:F1QMM9 Bgee:F1QMM9
Uniprot:F1QMM9
Length = 875
Score = 294 (108.6 bits), Expect = 7.4e-25, P = 7.4e-25
Identities = 80/234 (34%), Positives = 122/234 (52%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
FS L L E + PT++Q Q I L GRDVL A TG+GKT+A+L P++
Sbjct: 72 FSDFPLSKKTLKGLLEAQ-YRQPTEIQRQTIGFALQGRDVLGAAKTGSGKTLAFLIPVLE 130
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL--LHRFRWIVPGYVMGGGNRSKE 154
L Y + G AL++ PT EL +E+L+K+ H F G V+GG + E
Sbjct: 131 CL--YREQWTAMDGLGALIISPTRELAYQTFEVLRKVGKNHEFS---AGLVIGGKDLKDE 185
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214
++ + +I++ TPG LL H+ T++F ++L ++ DEADRIL++GF + I++
Sbjct: 186 SEKIHR-TNIIICTPGRLLQHMDETATFHASDLHMLVLDEADRILDMGFADTLNAIVE-- 242
Query: 215 GSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK-KF 267
N+ RQ LL SAT V L ++SL+ P + + E+ KF
Sbjct: 243 ---NLPK----------SRQTLLFSATQTRSVKDLARLSLKDPEYVWVHEQAKF 283
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 289 (106.8 bits), Expect = 7.5e-25, P = 7.5e-25
Identities = 69/181 (38%), Positives = 109/181 (60%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
FS+LGL + L + E+ G++ P+ +QAQAIP +L+G+DV+ A TGTGKT + P++
Sbjct: 3 FSALGLSAPLQKAVSEQ-GYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L +S T ALVL PT EL V E ++ ++ + V GG + +
Sbjct: 62 LLAKGHKA--KSGQTRALVLTPTRELAAQVGESVETY-GKYLPLRSAVVFGGVPINPQIN 118
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216
+LR G+ +LVATPG LLD L ++ L ++ DEADR+L++GF ++I++IL +L +
Sbjct: 119 KLRHGVDVLVATPGRLLD-LVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPA 177
Query: 217 R 217
+
Sbjct: 178 K 178
Score = 156 (60.0 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 42/118 (35%), Positives = 67/118 (56%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 204
V GG + + +LR G+ +LVATPG LLD L ++ L ++ DEADR+L++GF
Sbjct: 107 VFGGVPINPQINKLRHGVDVLVATPGRLLD-LVQQNAVKFNQLEILVLDEADRMLDMGFI 165
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGL 262
++I++IL +L + KRQNL+ SAT ++++ L K + PV I +
Sbjct: 166 RDIKKILALLPA---------------KRQNLMFSATFSDEIRELAKGLVNHPVEISV 208
>POMBASE|SPAC31A2.07c [details] [associations]
symbol:dbp10 "ATP-dependent RNA helicase Dbp10
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC31A2.07c
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OrthoDB:EOG4JWZP1
EMBL:AB027882 PIR:S59645 RefSeq:NP_592919.1
ProteinModelPortal:Q09719 STRING:Q09719 EnsemblFungi:SPAC31A2.07c.1
GeneID:2543197 KEGG:spo:SPAC31A2.07c OMA:FYIPYRP NextBio:20804220
Uniprot:Q09719
Length = 848
Score = 279 (103.3 bits), Expect = 8.4e-25, Sum P(2) = 8.4e-25
Identities = 67/178 (37%), Positives = 107/178 (60%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F S+GL+ TL + ++ GF+APT +Q + IP++L GRDV+ A TG+GKT A++ P+I
Sbjct: 71 FQSMGLNQTLLRAIFKK-GFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIE 129
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
HL+S +S T AL+L P EL L +++ K + + ++GG + ++ +
Sbjct: 130 HLKSTLA----NSNTRALILSPNRELALQTVKVV-KDFSKGTDLRSVAIVGGVSLEEQFS 184
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214
L I+VATPG L HLK +++ +++FDEADR+ E+GF ++ EIL L
Sbjct: 185 LLSGKPDIVVATPGRFL-HLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHAL 241
Score = 156 (60.0 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 47/142 (33%), Positives = 73/142 (51%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 204
++GG + ++ + L I+VATPG L HLK +++ +++FDEADR+ E+GF
Sbjct: 173 IVGGVSLEEQFSLLSGKPDIVVATPGRFL-HLKVEMKLELSSIEYVVFDEADRLFEMGFA 231
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLD- 263
++ EIL L + RQ LL SATL + K L+ PVL+ LD
Sbjct: 232 AQLTEILHALPT---------------SRQTLLFSATLPRTLVDFAKAGLQDPVLVRLDV 276
Query: 264 EKKFPEDKSNVHFGSLESDVKE 285
E K D + F S+++ +E
Sbjct: 277 ESKVSADLQSAFF-SVKTAERE 297
Score = 40 (19.1 bits), Expect = 8.4e-25, Sum P(2) = 8.4e-25
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 266 KFPEDKSNVHFGSLESDVKEEVEHPNTTLSS 296
+F E K++ FG+ +S ++E + + L +
Sbjct: 756 RFDEWKASKAFGANDSPIRENKRYKHNKLQT 786
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 285 (105.4 bits), Expect = 8.5e-25, P = 8.5e-25
Identities = 66/175 (37%), Positives = 98/175 (56%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
FS GLDS L + E +GF PT++Q QAIP ++G D++ ++ TG+GKT+A++ P +
Sbjct: 3 FSDFGLDSALMSTI-EHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQ 61
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L R ++L PT EL V+ L+ ++ ++GG N + +
Sbjct: 62 RLSKNRALSKRDPRV--VILTPTRELAKQVFSQLRLFTANTQYKAV-LILGGENFNDQVK 118
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTN-LRWIIFDEADRILELGFGKEIEEI 210
L+K +VATPG L DHL T H N L +I DEADR+L+LGF KE+ +I
Sbjct: 119 VLQKEPEFIVATPGRLADHL--TQGHFHLNGLELLILDEADRMLDLGFSKELTQI 171
Score = 170 (64.9 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 65/187 (34%), Positives = 90/187 (48%)
Query: 80 AATGTGKTVAYLAPIINHLQSYSP-RIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFR 138
A++ TG LA II LQ S R ++L PT EL V+ L+ +
Sbjct: 43 ASSKTGSGKT-LAFIIPALQRLSKNRALSKRDPRVVILTPTRELAKQVFSQLRLFTANTQ 101
Query: 139 WIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTN-LRWIIFDEADR 197
+ ++GG N + + L+K +VATPG L DHL T H N L +I DEADR
Sbjct: 102 YKAV-LILGGENFNDQVKVLQKEPEFIVATPGRLADHL--TQGHFHLNGLELLILDEADR 158
Query: 198 ILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNE-KVNHLTKISLET 256
+L+LGF KE+ +I N A+ + KRQ LL SATL+ +VN L
Sbjct: 159 MLDLGFSKELTQI-------NKAA-------DHRKRQTLLFSATLDHAQVNEFATELLTK 204
Query: 257 PVLIGLD 263
P I ++
Sbjct: 205 PKRIAIN 211
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 285 (105.4 bits), Expect = 8.5e-25, P = 8.5e-25
Identities = 66/175 (37%), Positives = 98/175 (56%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
FS GLDS L + E +GF PT++Q QAIP ++G D++ ++ TG+GKT+A++ P +
Sbjct: 3 FSDFGLDSALMSTI-EHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQ 61
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L R ++L PT EL V+ L+ ++ ++GG N + +
Sbjct: 62 RLSKNRALSKRDPRV--VILTPTRELAKQVFSQLRLFTANTQYKAV-LILGGENFNDQVK 118
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTN-LRWIIFDEADRILELGFGKEIEEI 210
L+K +VATPG L DHL T H N L +I DEADR+L+LGF KE+ +I
Sbjct: 119 VLQKEPEFIVATPGRLADHL--TQGHFHLNGLELLILDEADRMLDLGFSKELTQI 171
Score = 170 (64.9 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 65/187 (34%), Positives = 90/187 (48%)
Query: 80 AATGTGKTVAYLAPIINHLQSYSP-RIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFR 138
A++ TG LA II LQ S R ++L PT EL V+ L+ +
Sbjct: 43 ASSKTGSGKT-LAFIIPALQRLSKNRALSKRDPRVVILTPTRELAKQVFSQLRLFTANTQ 101
Query: 139 WIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTN-LRWIIFDEADR 197
+ ++GG N + + L+K +VATPG L DHL T H N L +I DEADR
Sbjct: 102 YKAV-LILGGENFNDQVKVLQKEPEFIVATPGRLADHL--TQGHFHLNGLELLILDEADR 158
Query: 198 ILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNE-KVNHLTKISLET 256
+L+LGF KE+ +I N A+ + KRQ LL SATL+ +VN L
Sbjct: 159 MLDLGFSKELTQI-------NKAA-------DHRKRQTLLFSATLDHAQVNEFATELLTK 204
Query: 257 PVLIGLD 263
P I ++
Sbjct: 205 PKRIAIN 211
>UNIPROTKB|Q2KEF1 [details] [associations]
symbol:MGCH7_ch7g1085 "Putative uncharacterized protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM000230
GO:GO:0008026 ProteinModelPortal:Q2KEF1 Uniprot:Q2KEF1
Length = 568
Score = 289 (106.8 bits), Expect = 9.2e-25, P = 9.2e-25
Identities = 84/249 (33%), Positives = 130/249 (52%)
Query: 32 FASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGR-DVLVNAATGTGKTVAY 90
FA +L LD L D + + L F+ + VQA I +++ R DVL A TGTGKT+A+
Sbjct: 74 FADLASENL-LDPVLLDTITQDLKFDRMSPVQAATIRHLIADRGDVLAQAKTGTGKTIAF 132
Query: 91 LAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGN 150
L P + L P R + LV+ PT EL L + + + LL R +GG N
Sbjct: 133 LLPALQTLLR-RPS-SRGNDVSVLVISPTRELALQIAKEAEALLQRLPQYKVCTAIGGTN 190
Query: 151 RSKEKARLRKGISILVATPGHLLDHLKHTS-SFLHTNLRWIIFDEADRILELGFGKEIEE 209
+ E+ R+ +G IL+ TPG L+DHL+ S + + ++ + DEADR+L++GF ++++
Sbjct: 191 KDAEQRRILRGCQILIGTPGRLMDHLEEQSVAEMLQSVDTFVLDEADRLLDMGFMPQLKK 250
Query: 210 ILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK---K 266
I+ L +R V RQ +L SAT+ E H+ K+S + + D K
Sbjct: 251 IVAALPNRQ-----------KVPRQGMLFSATVAE---HVAKVS---SIALAPDYKFIST 293
Query: 267 FPEDKSNVH 275
P+ +SN H
Sbjct: 294 IPKGESNTH 302
>DICTYBASE|DDB_G0280407 [details] [associations]
symbol:ddx56 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IEA;ISS]
[GO:0000027 "ribosomal large subunit assembly" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0280407 GO:GO:0005524 GO:GO:0005730
GenomeReviews:CM000152_GR GO:GO:0003723 EMBL:AAFI02000036
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0000027 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HSSP:P10081 RefSeq:XP_641158.1
STRING:Q54VF1 EnsemblProtists:DDB0234216 GeneID:8622538
KEGG:ddi:DDB_G0280407 OMA:CARETEM ProtClustDB:CLSZ2730700
Uniprot:Q54VF1
Length = 685
Score = 291 (107.5 bits), Expect = 9.3e-25, P = 9.3e-25
Identities = 78/233 (33%), Positives = 124/233 (53%)
Query: 35 CCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPI 94
C F S+GLD+ + L+ ++GF+ P+ VQ+++IP+ L G+D+L A TG+GKT AY PI
Sbjct: 23 CTFESMGLDNRILRALK-KMGFQNPSLVQSKSIPLSLQGKDILAKARTGSGKTAAYSIPI 81
Query: 95 INHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKE 154
I + + G A+VLVPT ELC V ++ + + +V +G E
Sbjct: 82 IQKVLMAKEK-SNIKGVKAVVLVPTRELCEQVKNHFNQVSYYCQQLVSVVQLGNDKTLDE 140
Query: 155 KARLRKGI-SILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDI 213
+ L + I ++V+TP L+ HL++ + L + L ++ DEAD +L G +I I
Sbjct: 141 QKGLLRDIPDVIVSTPTRLVQHLENKTIQLQSTLDILVIDEADLVLNYGHQNDINIIKSF 200
Query: 214 LGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKK 266
L +V Q L+SATL ++V L K+ L TP ++ L+E K
Sbjct: 201 LP-----------KVC----QCFLMSATLTKEVEELKKLVLHTPAVLKLEEDK 238
>DICTYBASE|DDB_G0292992 [details] [associations]
symbol:helA "putative RNA helicase" species:44689
"Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0292992 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000199 KO:K14808 HSSP:P10081 EMBL:X81822
RefSeq:XP_629281.1 ProteinModelPortal:Q54CD8 STRING:Q54CD8
EnsemblProtists:DDB0215372 GeneID:8629004 KEGG:ddi:DDB_G0292992
OMA:RLPKDGH ProtClustDB:CLSZ2429315 Uniprot:Q54CD8
Length = 1091
Score = 276 (102.2 bits), Expect = 9.4e-25, Sum P(2) = 9.4e-25
Identities = 64/184 (34%), Positives = 108/184 (58%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F S+ L L + ++ GF PT +Q ++IP+IL G D++ A TG+GKT A++ P+I
Sbjct: 232 FQSMDLTKNLLKAILKK-GFNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMIQ 290
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLH--RFRWIVPGYVMGGGNRSKE 154
L +S + G A++L PT EL + +++++ + R I+ ++GG + +
Sbjct: 291 KLGDHSTTV----GVRAVILSPTRELAIQTFKVVKDFSQGTQLRTIL---IVGGDSMEDQ 343
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214
L + I++ATPG L+ HL T L + +++I+FDEADR+ E+GF +++ EIL L
Sbjct: 344 FTDLARNPDIIIATPGRLMHHLLETGMSL-SKVQYIVFDEADRLFEMGFNEQLTEILSKL 402
Query: 215 GSRN 218
S N
Sbjct: 403 -SEN 405
Score = 168 (64.2 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 49/141 (34%), Positives = 74/141 (52%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 204
++GG + + L + I++ATPG L+ HL T L + +++I+FDEADR+ E+GF
Sbjct: 334 IVGGDSMEDQFTDLARNPDIIIATPGRLMHHLLETGMSL-SKVQYIVFDEADRLFEMGFN 392
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLD- 263
+++ EIL L S N RQ LL SATL + + L P LI LD
Sbjct: 393 EQLTEILSKL-SEN--------------RQTLLFSATLPSLLVDFVRAGLNNPKLINLDT 437
Query: 264 EKKFPEDKSNVHFGSLESDVK 284
+ K E+ S + F +L + K
Sbjct: 438 DTKISENLS-LSFFTLRHEEK 457
Score = 46 (21.3 bits), Expect = 9.4e-25, Sum P(2) = 9.4e-25
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 269 EDKSNVHFGSLESDVKE-EVEHPNTTLSSSTEDF 301
+DK VH +ES K+ ++ T L E+F
Sbjct: 748 KDKRKVHTNVIESQQKKLYLQQSETNLGPENEEF 781
>UNIPROTKB|Q9Y6V7 [details] [associations]
symbol:DDX49 "Probable ATP-dependent RNA helicase DDX49"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC002985 KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
HOVERGEN:HBG100512 EMBL:AK223294 EMBL:BC002674 IPI:IPI00003739
RefSeq:NP_061943.2 UniGene:Hs.143187 ProteinModelPortal:Q9Y6V7
SMR:Q9Y6V7 IntAct:Q9Y6V7 STRING:Q9Y6V7 PhosphoSite:Q9Y6V7
DMDM:74753527 PaxDb:Q9Y6V7 PRIDE:Q9Y6V7 DNASU:54555
Ensembl:ENST00000247003 GeneID:54555 KEGG:hsa:54555 UCSC:uc002nkq.2
CTD:54555 GeneCards:GC19P019030 HGNC:HGNC:18684 neXtProt:NX_Q9Y6V7
PharmGKB:PA134956171 InParanoid:Q9Y6V7 OrthoDB:EOG4C87SC
PhylomeDB:Q9Y6V7 GenomeRNAi:54555 NextBio:57032 ArrayExpress:Q9Y6V7
Bgee:Q9Y6V7 CleanEx:HS_DDX49 Genevestigator:Q9Y6V7
GermOnline:ENSG00000105671 Uniprot:Q9Y6V7
Length = 483
Score = 286 (105.7 bits), Expect = 1.0e-24, P = 1.0e-24
Identities = 81/224 (36%), Positives = 119/224 (53%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+ LGL S L +Q R+ LG + PT VQ IP IL GRD L A TG+GKT A++ PI+
Sbjct: 4 FAELGLSSWLVEQCRQ-LGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQ 62
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L S P G F LVL PT EL + E ++L + + ++GG + +
Sbjct: 63 KL-SEDPY-----GIFCLVLTPTRELAYQIAEQF-RVLGKPLGLKDCIIVGGMDMVAQAL 115
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELG---FGKEIEEILDI 213
L + +++ATPG L DHL+ +++F +R+++ DEADR+LE G F ++E IL
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAA 175
Query: 214 LGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETP 257
+ +R RQ LL SATL + + L ++ P
Sbjct: 176 VPAR---------------RQTLLFSATLTDTLRELQGLATNQP 204
>UNIPROTKB|E2RBM7 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
OMA:EVRTVEQ GeneTree:ENSGT00670000098028 CTD:54555
EMBL:AAEX03012274 RefSeq:XP_541930.1 ProteinModelPortal:E2RBM7
Ensembl:ENSCAFT00000023054 GeneID:484814 KEGG:cfa:484814
NextBio:20858886 Uniprot:E2RBM7
Length = 488
Score = 286 (105.7 bits), Expect = 1.1e-24, P = 1.1e-24
Identities = 81/224 (36%), Positives = 119/224 (53%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+ LGL S L +Q R+ LG + PT VQ IP IL GRD L A TG+GKT A++ PI+
Sbjct: 4 FAELGLSSWLVEQCRQ-LGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQ 62
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L S P G F LVL PT EL + E ++L + + ++GG + +
Sbjct: 63 KL-SEDPY-----GIFCLVLTPTRELAYQIAEQF-RVLGKPLGLKDCIIVGGMDMVAQAL 115
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELG---FGKEIEEILDI 213
L + +++ATPG L DHL+ +++F +R+++ DEADR+LE G F ++E IL
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAA 175
Query: 214 LGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETP 257
+ +R RQ LL SATL + + L ++ P
Sbjct: 176 VPTR---------------RQTLLFSATLTDTLKELQGLATNQP 204
>UNIPROTKB|F1P0I3 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074980 IPI:IPI00595697
OMA:ADKVIEP EMBL:AADN02005060 Ensembl:ENSGALT00000027709
Uniprot:F1P0I3
Length = 875
Score = 292 (107.8 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 80/234 (34%), Positives = 125/234 (53%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
FS L L+E + T++Q Q I + L G+DVL A TG+GKT+A++ P +
Sbjct: 75 FSDFPLSKKTLKGLQEAQ-YRMVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPALE 133
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL--LHRFRWIVPGYVMGGGNRSKE 154
L Y + + G L++ PT EL +++L+K+ H F G ++GG + +E
Sbjct: 134 LL--YRLQWTSADGLGVLIISPTRELAFQTFKVLRKVGKNHDFS---AGLIIGGKDLKEE 188
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214
R+ I++L+ TPG LL H+ TS F ++L+ +I DEADRIL++GF + I++
Sbjct: 189 SERIHH-INMLICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMGFADTMNAIIE-- 245
Query: 215 GSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK-KF 267
N+ KRQ LL SAT + V L ++SL+ P + + EK KF
Sbjct: 246 ---NLPK----------KRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKF 286
>UNIPROTKB|Q5ZJF6 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
EMBL:AJ720478 IPI:IPI00595697 RefSeq:NP_001073193.1
UniGene:Gga.15096 HSSP:P26196 ProteinModelPortal:Q5ZJF6 SMR:Q5ZJF6
STRING:Q5ZJF6 GeneID:418965 KEGG:gga:418965 CTD:1662
HOVERGEN:HBG102756 InParanoid:Q5ZJF6 OrthoDB:EOG4BK536
NextBio:20822084 Uniprot:Q5ZJF6
Length = 875
Score = 292 (107.8 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 80/234 (34%), Positives = 125/234 (53%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
FS L L+E + T++Q Q I + L G+DVL A TG+GKT+A++ P +
Sbjct: 75 FSDFPLSKKTLKGLQEAQ-YRMVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPALE 133
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL--LHRFRWIVPGYVMGGGNRSKE 154
L Y + + G L++ PT EL +++L+K+ H F G ++GG + +E
Sbjct: 134 LL--YRLQWTSADGLGVLIISPTRELAFQTFKVLRKVGKNHDFS---AGLIIGGKDLKEE 188
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214
R+ I++L+ TPG LL H+ TS F ++L+ +I DEADRIL++GF + I++
Sbjct: 189 SERIHH-INMLICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMGFADTMNAIIE-- 245
Query: 215 GSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK-KF 267
N+ KRQ LL SAT + V L ++SL+ P + + EK KF
Sbjct: 246 ---NLPK----------KRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKF 286
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 291 (107.5 bits), Expect = 1.4e-24, P = 1.4e-24
Identities = 60/175 (34%), Positives = 105/175 (60%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F G + +++R++ GF PT +QAQ P+ +SGRD++ A TG+GKT+AY+ P +
Sbjct: 159 FEEGGFPDYVMNEIRKQ-GFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVV 217
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
H+ + PR++R G ALVL PT EL + ++ + + + GG + ++
Sbjct: 218 HINN-QPRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTH-VRNTCIFGGAPKGQQAR 275
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 211
L +G+ I++ATPG L+D L+ ++ L +++ DEADR+L++GF +I +I+
Sbjct: 276 DLERGVEIVIATPGRLIDFLERGTTSLK-RCTYLVLDEADRMLDMGFEPQIRKIM 329
>TAIR|locus:2037416 [details] [associations]
symbol:RCF1 "regulator of CBF gene expression 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003723 EMBL:AC007369
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
HOGENOM:HOG000007229 EMBL:BT002030 IPI:IPI00537100 PIR:H86341
RefSeq:NP_173516.1 UniGene:At.41680 UniGene:At.48212
ProteinModelPortal:Q8H0U8 SMR:Q8H0U8 PaxDb:Q8H0U8 PRIDE:Q8H0U8
EnsemblPlants:AT1G20920.1 GeneID:838685 KEGG:ath:AT1G20920
KEGG:dosa:Os08t0154225-00 KEGG:dosa:Os08t0159900-01 GeneFarm:1021
TAIR:At1g20920 InParanoid:Q8H0U8 OMA:QIHSDIR PhylomeDB:Q8H0U8
ProtClustDB:CLSN2679447 Genevestigator:Q8H0U8 GermOnline:AT1G20920
Uniprot:Q8H0U8
Length = 1166
Score = 292 (107.8 bits), Expect = 1.9e-24, P = 1.9e-24
Identities = 77/224 (34%), Positives = 124/224 (55%)
Query: 41 GLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQS 100
GL S + D ++ +L +E P +Q QA+P+I+SGRD + A TG+GKT+ ++ P++ H++
Sbjct: 535 GLTSKILDTMK-KLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKD 593
Query: 101 YSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRW-IVPGYVMGGGNRSKEKARLR 159
P ++ G LV+ PT EL ++ ++K VP Y GG +++ + L+
Sbjct: 594 QPP-VEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVY--GGSGVAQQISELK 650
Query: 160 KGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILDILGS 216
+G I+V TPG ++D L TSS TNLR +++ DEADR+ ++GF +I I+
Sbjct: 651 RGTEIVVCTPGRMIDILC-TSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRII----- 704
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
+NI +RQ +L SAT +V L + L PV I
Sbjct: 705 QNIRP----------ERQTVLFSATFPRQVETLARKVLNKPVEI 738
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 284 (105.0 bits), Expect = 2.1e-24, P = 2.1e-24
Identities = 78/236 (33%), Positives = 120/236 (50%)
Query: 30 EIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVA 89
E F S FS L L L Q + L + PT +Q++AIP L G D++ A TG+GKT A
Sbjct: 78 ESFES--FSELNLVPELI-QACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAA 134
Query: 90 YLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGG 149
+ PI+N L D+ +A +L PT EL + E L + ++GG
Sbjct: 135 FAIPILNRLWH-----DQEP-YYACILAPTRELAQQIKETFDSL-GSLMGVRSTCIVGGM 187
Query: 150 NRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEE 209
N + L + I++ATPG L+DHL++T F L++++ DEADR+L++ FG ++
Sbjct: 188 NMMDQARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDR 247
Query: 210 ILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265
IL I+ ++ +R L SAT+ K++ L + SL PV + K
Sbjct: 248 ILKIIPTQ--------------ERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNK 289
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 290 (107.1 bits), Expect = 2.3e-24, P = 2.3e-24
Identities = 63/177 (35%), Positives = 108/177 (61%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F L + + ++++ R GF PT +Q+Q P+ LSGRD++ A TG+GKT+AY+ P I
Sbjct: 239 FEESSLPAHVIEEMK-RQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIV 297
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
H+ + P I R G ALVL PT EL + +++ H + + + GG+ +A
Sbjct: 298 HIGNQPPII-RGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQA 356
Query: 157 R-LRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 212
R L +G+ +++ATPG L+D L++ ++ L +++ DEADR+L++GF +I +I++
Sbjct: 357 RDLDRGVEVIIATPGRLIDFLENRNTNLQ-RCTYLVLDEADRMLDMGFEPQIRKIIE 412
>POMBASE|SPCC63.11 [details] [associations]
symbol:prp28 "U5 snRNP-associated protein Prp28
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
Length = 662
Score = 287 (106.1 bits), Expect = 2.3e-24, P = 2.3e-24
Identities = 77/229 (33%), Positives = 130/229 (56%)
Query: 41 GLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQS 100
GL S + L+ ++ ++ P+ +Q AIPV+L +D++ A TG+GKT A++ P+I +
Sbjct: 255 GLPSEMLKVLK-KVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISK 313
Query: 101 YSPRIDRSS--GTFALVLVPTSELCLLVYEILQKLLHR--FRWIVPGYVMGGGNRSKEKA 156
P + + G +A+VL PT EL + K FR + V+GG ++
Sbjct: 314 LPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVS---VVGGHAFEEQSF 370
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216
++ +G I+VATPG LLD L+ F+ + +++ DEADR+L++GF ++ +IL L S
Sbjct: 371 QMSQGAHIVVATPGRLLDCLERRL-FVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPS 429
Query: 217 RNIASIGEGNEV-----SNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
N AS +G+ + S+ +RQ ++ SATL +V +L K L PV++
Sbjct: 430 SN-ASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVML 477
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 283 (104.7 bits), Expect = 2.5e-24, P = 2.5e-24
Identities = 71/189 (37%), Positives = 105/189 (55%)
Query: 29 KEIFA--SCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGK 86
K +FA C F +D+ L DQ F PT +Q Q P+ LSGRD++ A TG+GK
Sbjct: 87 KPVFAFHQCSFPQYVMDA-LMDQ-----NFTEPTPIQCQGFPLALSGRDMVGIAQTGSGK 140
Query: 87 TVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVM 146
T+AYL P I H+ ++ P ++R G LVL PT EL V ++ R + +
Sbjct: 141 TLAYLLPAIVHI-NHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSR-LKSTCIY 198
Query: 147 GGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILELGF 203
GG + + L +G+ I +ATPG L+D L+ TNLR +++ DEADR+L++GF
Sbjct: 199 GGAPKGPQIRDLERGVEICIATPGRLIDFLEAGK----TNLRRCTYLVLDEADRMLDMGF 254
Query: 204 GKEIEEILD 212
+I +I+D
Sbjct: 255 EPQIRKIVD 263
Score = 122 (48.0 bits), Expect = 0.00012, P = 0.00012
Identities = 38/121 (31%), Positives = 62/121 (51%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILEL 201
+ GG + + L +G+ I +ATPG L+D L+ TNLR +++ DEADR+L++
Sbjct: 197 IYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGK----TNLRRCTYLVLDEADRMLDM 252
Query: 202 GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIG 261
GF +I +I+D + RQ L+ SAT ++V L + L+ V I
Sbjct: 253 GFEPQIRKIVDQI---------------RPDRQTLMWSATWPKEVRQLAEDFLQDYVQIN 297
Query: 262 L 262
+
Sbjct: 298 V 298
>UNIPROTKB|Q7L014 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12811 EMBL:AF106680 EMBL:AB018344 EMBL:BC012304 EMBL:BK000565
IPI:IPI00329791 RefSeq:NP_055644.2 UniGene:Hs.406549
ProteinModelPortal:Q7L014 SMR:Q7L014 IntAct:Q7L014
MINT:MINT-3002486 STRING:Q7L014 PhosphoSite:Q7L014 DMDM:116241326
PaxDb:Q7L014 PeptideAtlas:Q7L014 PRIDE:Q7L014
Ensembl:ENST00000354283 Ensembl:ENST00000452510 GeneID:9879
KEGG:hsa:9879 UCSC:uc003kzw.3 CTD:9879 GeneCards:GC05P134094
HGNC:HGNC:18681 HPA:HPA036554 neXtProt:NX_Q7L014
PharmGKB:PA134894452 HOGENOM:HOG000007229 HOVERGEN:HBG081426
InParanoid:Q7L014 OrthoDB:EOG441Q9T ChiTaRS:DDX46 GenomeRNAi:9879
NextBio:37233 PMAP-CutDB:Q7L014 ArrayExpress:Q7L014 Bgee:Q7L014
CleanEx:HS_DDX46 Genevestigator:Q7L014 GermOnline:ENSG00000145833
Uniprot:Q7L014
Length = 1031
Score = 290 (107.1 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 73/233 (31%), Positives = 124/233 (53%)
Query: 41 GLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQS 100
G+ + + L++ G+E PT +Q QAIP I+SGRD++ A TG+GKT+A+L P+ H+
Sbjct: 378 GISMKILNSLKKH-GYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD 436
Query: 101 YSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRK 160
++ G A+++ PT EL L + + +K V V GG S++ A L++
Sbjct: 437 QRS-LEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVV-CVYGGTGISEQIAELKR 494
Query: 161 GISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILD-ILGS 216
G I+V TPG ++D L S + TNLR +++ DEADR+ ++GF ++ I+D +
Sbjct: 495 GAEIIVCTPGRMIDMLAANSGRV-TNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPD 553
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKI--SLETPVLIGLDEKKF 267
R + +LS + +V + + +E V++ +EKKF
Sbjct: 554 RQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKF 606
>UNIPROTKB|F1MX40 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:DAAA02020348
EMBL:DAAA02020349 IPI:IPI00703383 Ensembl:ENSBTAT00000028682
Uniprot:F1MX40
Length = 1032
Score = 290 (107.1 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 73/233 (31%), Positives = 124/233 (53%)
Query: 41 GLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQS 100
G+ + + L++ G+E PT +Q QAIP I+SGRD++ A TG+GKT+A+L P+ H+
Sbjct: 378 GISMKILNSLKKH-GYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD 436
Query: 101 YSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRK 160
++ G A+++ PT EL L + + +K V V GG S++ A L++
Sbjct: 437 QRS-LEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVV-CVYGGTGISEQIAELKR 494
Query: 161 GISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILD-ILGS 216
G I+V TPG ++D L S + TNLR +++ DEADR+ ++GF ++ I+D +
Sbjct: 495 GAEIIVCTPGRMIDMLAANSGRV-TNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPD 553
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKI--SLETPVLIGLDEKKF 267
R + +LS + +V + + +E V++ +EKKF
Sbjct: 554 RQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKF 606
>UNIPROTKB|F1PK90 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AAEX03007786
Ensembl:ENSCAFT00000001619 Uniprot:F1PK90
Length = 1032
Score = 290 (107.1 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 73/233 (31%), Positives = 124/233 (53%)
Query: 41 GLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQS 100
G+ + + L++ G+E PT +Q QAIP I+SGRD++ A TG+GKT+A+L P+ H+
Sbjct: 378 GISMKILNSLKKH-GYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD 436
Query: 101 YSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRK 160
++ G A+++ PT EL L + + +K V V GG S++ A L++
Sbjct: 437 QRS-LEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVV-CVYGGTGISEQIAELKR 494
Query: 161 GISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILD-ILGS 216
G I+V TPG ++D L S + TNLR +++ DEADR+ ++GF ++ I+D +
Sbjct: 495 GAEIIVCTPGRMIDMLAANSGRV-TNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPD 553
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKI--SLETPVLIGLDEKKF 267
R + +LS + +V + + +E V++ +EKKF
Sbjct: 554 RQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKF 606
>UNIPROTKB|I3LR20 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:FP312757
Ensembl:ENSSSCT00000027801 Uniprot:I3LR20
Length = 1032
Score = 290 (107.1 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 73/233 (31%), Positives = 124/233 (53%)
Query: 41 GLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQS 100
G+ + + L++ G+E PT +Q QAIP I+SGRD++ A TG+GKT+A+L P+ H+
Sbjct: 378 GISMKILNSLKKH-GYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD 436
Query: 101 YSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRK 160
++ G A+++ PT EL L + + +K V V GG S++ A L++
Sbjct: 437 QRS-LEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVV-CVYGGTGISEQIAELKR 494
Query: 161 GISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILD-ILGS 216
G I+V TPG ++D L S + TNLR +++ DEADR+ ++GF ++ I+D +
Sbjct: 495 GAEIIVCTPGRMIDMLAANSGRV-TNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPD 553
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKI--SLETPVLIGLDEKKF 267
R + +LS + +V + + +E V++ +EKKF
Sbjct: 554 RQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKF 606
>MGI|MGI:1920895 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1920895
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T ChiTaRS:DDX46 EMBL:AK129220 EMBL:BC026492
EMBL:BC092240 IPI:IPI00468896 IPI:IPI00660556 RefSeq:NP_666087.3
UniGene:Mm.202725 ProteinModelPortal:Q569Z5 SMR:Q569Z5
STRING:Q569Z5 PhosphoSite:Q569Z5 PaxDb:Q569Z5 PRIDE:Q569Z5
Ensembl:ENSMUST00000172272 GeneID:212880 KEGG:mmu:212880
UCSC:uc011yzx.1 InParanoid:Q569Z5 OMA:IEEENKF NextBio:373723
Bgee:Q569Z5 CleanEx:MM_DDX46 Genevestigator:Q569Z5
GermOnline:ENSMUSG00000021500 Uniprot:Q569Z5
Length = 1032
Score = 290 (107.1 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 73/233 (31%), Positives = 124/233 (53%)
Query: 41 GLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQS 100
G+ + + L++ G+E PT +Q QAIP I+SGRD++ A TG+GKT+A+L P+ H+
Sbjct: 378 GISMKILNSLKKH-GYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD 436
Query: 101 YSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRK 160
++ G A+++ PT EL L + + +K V V GG S++ A L++
Sbjct: 437 QRS-LEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVV-CVYGGTGISEQIAELKR 494
Query: 161 GISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILD-ILGS 216
G I+V TPG ++D L S + TNLR +++ DEADR+ ++GF ++ I+D +
Sbjct: 495 GAEIIVCTPGRMIDMLAANSGRV-TNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPD 553
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKI--SLETPVLIGLDEKKF 267
R + +LS + +V + + +E V++ +EKKF
Sbjct: 554 RQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKF 606
>RGD|708480 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:708480
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0003723 GO:GO:0015030
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 KO:K12811 CTD:9879
HOGENOM:HOG000007229 HOVERGEN:HBG081426 OrthoDB:EOG441Q9T
EMBL:U25746 EMBL:BC107590 IPI:IPI00208266 PIR:A57514
RefSeq:NP_620798.1 UniGene:Rn.3436 ProteinModelPortal:Q62780
STRING:Q62780 PhosphoSite:Q62780 PRIDE:Q62780
Ensembl:ENSRNOT00000029885 GeneID:245957 KEGG:rno:245957
UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 290 (107.1 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 73/233 (31%), Positives = 124/233 (53%)
Query: 41 GLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQS 100
G+ + + L++ G+E PT +Q QAIP I+SGRD++ A TG+GKT+A+L P+ H+
Sbjct: 378 GISMKILNSLKKH-GYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD 436
Query: 101 YSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRK 160
++ G A+++ PT EL L + + +K V V GG S++ A L++
Sbjct: 437 QRS-LEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVV-CVYGGTGISEQIAELKR 494
Query: 161 GISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILD-ILGS 216
G I+V TPG ++D L S + TNLR +++ DEADR+ ++GF ++ I+D +
Sbjct: 495 GAEIIVCTPGRMIDMLAANSGRV-TNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPD 553
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKI--SLETPVLIGLDEKKF 267
R + +LS + +V + + +E V++ +EKKF
Sbjct: 554 RQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKF 606
>UNIPROTKB|Q62780 [details] [associations]
symbol:Ddx46 "Probable ATP-dependent RNA helicase DDX46"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:708480 GO:GO:0005524
GO:GO:0005634 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T EMBL:U25746 EMBL:BC107590 IPI:IPI00208266
PIR:A57514 RefSeq:NP_620798.1 UniGene:Rn.3436
ProteinModelPortal:Q62780 STRING:Q62780 PhosphoSite:Q62780
PRIDE:Q62780 Ensembl:ENSRNOT00000029885 GeneID:245957
KEGG:rno:245957 UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 290 (107.1 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 73/233 (31%), Positives = 124/233 (53%)
Query: 41 GLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQS 100
G+ + + L++ G+E PT +Q QAIP I+SGRD++ A TG+GKT+A+L P+ H+
Sbjct: 378 GISMKILNSLKKH-GYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMD 436
Query: 101 YSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRK 160
++ G A+++ PT EL L + + +K V V GG S++ A L++
Sbjct: 437 QRS-LEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVV-CVYGGTGISEQIAELKR 494
Query: 161 GISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILD-ILGS 216
G I+V TPG ++D L S + TNLR +++ DEADR+ ++GF ++ I+D +
Sbjct: 495 GAEIIVCTPGRMIDMLAANSGRV-TNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPD 553
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKI--SLETPVLIGLDEKKF 267
R + +LS + +V + + +E V++ +EKKF
Sbjct: 554 RQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKF 606
>SGD|S000004266 [details] [associations]
symbol:DBP9 "DEAD-box protein required for 27S rRNA
processing" species:4932 "Saccharomyces cerevisiae" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000463 "maturation
of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IDA] [GO:0033680 "ATP-dependent DNA/RNA helicase
activity" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004266 GO:GO:0005524
GO:GO:0005730 EMBL:BK006945 GO:GO:0003723 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000463
GO:GO:0004004 GO:GO:0033680 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:U17245 KO:K14810 HOGENOM:HOG000253015
OMA:TFLMSAT OrthoDB:EOG4DFSWQ EMBL:AY723847 PIR:S51412
RefSeq:NP_013378.1 ProteinModelPortal:Q06218 SMR:Q06218
DIP:DIP-4771N IntAct:Q06218 MINT:MINT-487200 STRING:Q06218
PaxDb:Q06218 PeptideAtlas:Q06218 EnsemblFungi:YLR276C GeneID:850982
KEGG:sce:YLR276C CYGD:YLR276c GeneTree:ENSGT00550000074946
NextBio:967498 Genevestigator:Q06218 GermOnline:YLR276C
Uniprot:Q06218
Length = 594
Score = 285 (105.4 bits), Expect = 2.9e-24, P = 2.9e-24
Identities = 77/246 (31%), Positives = 132/246 (53%)
Query: 34 SCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSG-RDVLVNAATGTGKTVAYLA 92
S F + LDS L ++ +GF+ PT +Q+ AIP+ L RD++ AATG+GKT+AYL
Sbjct: 16 STTFEAFHLDSRLLQAIKN-IGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLAYLI 74
Query: 93 PIINHLQSYSPRIDRS--SGTFALVLVPTSELCLLVYEILQKL-LHRFRWIVPGYVMGGG 149
P+I + Y ID +GT ++LVPT EL VY +L+KL L+ + I +
Sbjct: 75 PVIETILEYKKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCSKDIRTLNISSDM 134
Query: 150 NRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTN-LRWIIFDEADRILELGFGKEIE 208
+ S L I+V TPG LLD L+ + + N L++++ DE D +L G+ ++
Sbjct: 135 SDSVLSTLLMDQPEIIVGTPGKLLDLLQTKINSISLNELKFLVVDEVDLVLTFGYQDDLN 194
Query: 209 EILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFP 268
+I + L + N+ Q L+SATLN+ + L + +P ++ ++++
Sbjct: 195 KIGEYLPLKK-----------NL--QTFLMSATLNDDIQALKQKFCRSPAILKFNDEEIN 241
Query: 269 EDKSNV 274
++++ +
Sbjct: 242 KNQNKL 247
>UNIPROTKB|F1NTK9 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003714 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00550000075100
EMBL:AADN02043183 IPI:IPI00582285 ProteinModelPortal:F1NTK9
Ensembl:ENSGALT00000012108 Uniprot:F1NTK9
Length = 822
Score = 288 (106.4 bits), Expect = 2.9e-24, P = 2.9e-24
Identities = 64/175 (36%), Positives = 104/175 (59%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F S+GL + + ++ G++ PT +Q + IPVIL GRDV+ A TG+GKT +L P+
Sbjct: 38 FQSMGLSYPVFKGVMKK-GYKVPTPIQRKTIPVILRGRDVVAMARTGSGKTACFLLPMFE 96
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L++ SP SG AL+L PT EL L + ++L +F + V+GG + A
Sbjct: 97 RLKAPSP-----SGARALILSPTRELALQTLKFTKEL-GKFTGLKTALVLGGDKMEDQFA 150
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 211
L + I++ATPG L+ H+ + ++ +++FDEADR+ E+GF ++++EIL
Sbjct: 151 ALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIL 204
Score = 151 (58.2 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 48/157 (30%), Positives = 78/157 (49%)
Query: 132 KLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWII 191
K L +F + V+GG + A L + I++ATPG L+ H+ + ++ +++
Sbjct: 126 KELGKFTGLKTALVLGGDKMEDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVV 184
Query: 192 FDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTK 251
FDEADR+ E+GF ++++EIL L G+ Q +L SATL + + +
Sbjct: 185 FDEADRLFEMGFAEQLQEILARL---------PGSH------QTVLFSATLPKLLVEFAR 229
Query: 252 ISLETPVLIGLD-EKKFPEDKSNVHFGSLESDVKEEV 287
L P+LI LD E K E + + F + D K V
Sbjct: 230 AGLTEPMLIRLDVESKLSE-QLKLAFFHVRGDDKPAV 265
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 284 (105.0 bits), Expect = 2.9e-24, P = 2.9e-24
Identities = 66/176 (37%), Positives = 102/176 (57%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F G + + ++++ LGFEAPT +Q QA P+ +SGRD++ +ATG+GKT++Y P I
Sbjct: 124 FEEAGFPNYVLKEVKQ-LGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIV 182
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
H+ + P + G LVL PT EL + + + K R I V GG R +
Sbjct: 183 HINA-QPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSR-IRNTCVYGGVPRGPQIR 240
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 212
L +G+ I +ATPG LLD L + L + +++ DEADR+L++GF +I +I+D
Sbjct: 241 DLIRGVEICIATPGRLLDMLDSNKTNLR-RVTYLVLDEADRMLDMGFEPQIRKIVD 295
Score = 119 (46.9 bits), Expect = 0.00030, P = 0.00030
Identities = 34/107 (31%), Positives = 55/107 (51%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 204
V GG R + L +G+ I +ATPG LLD L + L + +++ DEADR+L++GF
Sbjct: 229 VYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTNLR-RVTYLVLDEADRMLDMGFE 287
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTK 251
+I +I+D + RQ ++ SAT ++V L +
Sbjct: 288 PQIRKIVDQI---------------RPDRQTVMFSATWPKEVQRLAR 319
>RGD|1311124 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1311124 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 IPI:IPI00362462 PRIDE:E9PTF0
Ensembl:ENSRNOT00000004891 UCSC:RGD:1311124 Uniprot:E9PTF0
Length = 480
Score = 281 (104.0 bits), Expect = 3.7e-24, P = 3.7e-24
Identities = 80/224 (35%), Positives = 118/224 (52%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+ L L S L +Q R+ LG + PT VQ IP IL GRD L A TG+GKT A++ PI+
Sbjct: 4 FAELRLSSWLVEQCRQ-LGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQ 62
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L S P G F LVL PT EL + E ++L + + ++GG + +
Sbjct: 63 KL-SEDPY-----GIFCLVLTPTRELAYQIAEQF-RVLGKPLGLKDCIIVGGMDMVTQAL 115
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELG---FGKEIEEILDI 213
L + +++ATPG L DHL+ +++F +R+++ DEADR+LE G F ++E IL
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFNMKKIRFLVLDEADRLLEQGCTDFTADLETILSA 175
Query: 214 LGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETP 257
+ +R RQ LL SATL + + L ++ P
Sbjct: 176 VPAR---------------RQTLLFSATLTDTLKELQGLATNQP 204
>DICTYBASE|DDB_G0275443 [details] [associations]
symbol:helB1 "putative RNA splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
ProtClustDB:CLSZ2500419 Uniprot:Q553B1
Length = 1151
Score = 289 (106.8 bits), Expect = 4.0e-24, P = 4.0e-24
Identities = 75/214 (35%), Positives = 120/214 (56%)
Query: 50 LRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSS 109
L ++ +E PT +QAQ IP I++GRD++ A TG+GKT+A+L P+ H+ + P+
Sbjct: 523 LLKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFRHILA-QPKSAPGE 581
Query: 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATP 169
G AL++ PT EL L ++ +K + + V GG + S++ A L++G I+V TP
Sbjct: 582 GMIALIMSPTRELALQIHVECKKF-SKVLGLRTACVYGGASISEQIAELKRGADIVVCTP 640
Query: 170 GHLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGN 226
G ++D L + + TNLR +++ DEADR+ ++GFG +I I+D SI
Sbjct: 641 GRMIDILCANNRRI-TNLRRVTFLVLDEADRMFDMGFGPQINCIVD--------SI---- 687
Query: 227 EVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
RQ ++ SAT KV ++ K L P+ I
Sbjct: 688 ---RPDRQTIMFSATFPPKVENVAKKILNKPLEI 718
>SGD|S000006040 [details] [associations]
symbol:DBP1 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
Uniprot:P24784
Length = 617
Score = 283 (104.7 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 76/235 (32%), Positives = 119/235 (50%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
FSS LD L + ++ F PT VQ +IP++ GRD++ A TG+GKT +L P+
Sbjct: 156 FSSPPLDELLMENIK-LASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFT 214
Query: 97 HLQSYSPR-IDRSSGTF--------ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMG 147
L P + + +F ALVL PT EL ++E +K +R W+ P V G
Sbjct: 215 ELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYR-SWVRPCVVYG 273
Query: 148 GGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEI 207
G + + +G +LVATPG L D L+ L N+++++ DEADR+L++GF +I
Sbjct: 274 GAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSL-ANIKYLVLDEADRMLDMGFEPQI 332
Query: 208 EEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGL 262
I++ E + S RQ L+ SAT + HL + L+ + + +
Sbjct: 333 RHIVE-----------ECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSV 376
>TIGR_CMR|CPS_4097 [details] [associations]
symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
Uniprot:Q47WS0
Length = 430
Score = 277 (102.6 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 69/185 (37%), Positives = 100/185 (54%)
Query: 27 TVKEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGK 86
T+ E+ S F LDS L + ++G+ PT +Q IP + G+DVL +A TGTGK
Sbjct: 7 TLSEL--SLMFEQFDLDSELLASIN-KIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGK 63
Query: 87 TVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVM 146
T A+L PI HL Y PR + L+L PT EL + + E ++L + I G +
Sbjct: 64 TAAFLLPIAQHLLDY-PRT-KPGFPRVLILTPTRELAIQIGEDSEQLTELTK-IKTGVIT 120
Query: 147 GGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 206
GG N L ILVATPG LL+++++ F + ++ DEADR+L+LGF +
Sbjct: 121 GGVNYGSHADILTSTTDILVATPGRLLEYIEN-EQFDAREIEILVLDEADRMLDLGFSET 179
Query: 207 IEEIL 211
I I+
Sbjct: 180 INRIV 184
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 256 (95.2 bits), Expect = 6.7e-24, Sum P(2) = 6.7e-24
Identities = 64/185 (34%), Positives = 106/185 (57%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+ G + + + R G+ PT VQ +IP +L+ RD++ A TG+GKT A+L PII
Sbjct: 141 FNEAGFGPAVMENVN-RSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQ 199
Query: 97 HLQSYSPRIDR----SSG--TF---ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMG 147
H+ + P + + ++G T+ ALVL PT EL + +++ K ++ I + G
Sbjct: 200 HILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSN-IQTAILYG 258
Query: 148 GGNRSKEKA-RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 206
G +++ RLR G IL+ATPG L+D ++ L R+++ DEADR+L++GF +
Sbjct: 259 GRENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGL-AGCRYLVLDEADRMLDMGFEPQ 317
Query: 207 IEEIL 211
I +I+
Sbjct: 318 IRKIV 322
Score = 51 (23.0 bits), Expect = 6.7e-24, Sum P(2) = 6.7e-24
Identities = 18/81 (22%), Positives = 39/81 (48%)
Query: 228 VSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKSNVHFGSLESDVKEEV 287
V+ +++++ L+ +NE +L + +ET G +E + ++ + S+ D+K+
Sbjct: 379 VNEMEKRSNLMEILMNEHSENLVLVFVETKR--GANELAYFLNRQQIRSVSIHGDLKQIE 436
Query: 288 EHPNTTLSSSTEDFMLPAKLV 308
N L S + +L A V
Sbjct: 437 RERNLELFRSGQCPILVATAV 457
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 286 (105.7 bits), Expect = 7.1e-24, P = 7.1e-24
Identities = 73/233 (31%), Positives = 125/233 (53%)
Query: 41 GLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQS 100
G+ + + L++ +E PT +QAQAIP I+SGRD++ A TG+GKT+A+L P+ H+
Sbjct: 363 GISMKVLNALKKH-NYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILD 421
Query: 101 YSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRK 160
P + + G A+++ PT EL L + + +K V V GG S++ A L++
Sbjct: 422 QRP-VGEAEGPLAVIMTPTRELALQITKECKKFSKSLALRVV-CVYGGTGISEQIAELKR 479
Query: 161 GISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILD-ILGS 216
G I+V TPG ++D L + + TNLR +++ DEADR+ ++GF ++ I+D +
Sbjct: 480 GAEIIVCTPGRMIDMLGANNGRV-TNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNVRPD 538
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKI--SLETPVLIGLDEKKF 267
R + +LS + +V + + +E V++ +EKKF
Sbjct: 539 RQTVMFSATFPRTMEALARRILSKPVEVQVGGRSVVCSDVEQHVIVIEEEKKF 591
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 283 (104.7 bits), Expect = 7.2e-24, P = 7.2e-24
Identities = 58/176 (32%), Positives = 103/176 (58%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+ G D L Q+R+ + PT +Q Q +PV +SGRD++ A TG+GKT A++ P++
Sbjct: 250 FAHFGFDEQLMHQIRKS-EYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLI 308
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL--LHRFRWIVPGYVMGGGNRSKE 154
H+ ++ G A+++ PT ELC ++ ++ + R + V GGG+ ++
Sbjct: 309 HIMDQK-ELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVA---VYGGGSMWEQ 364
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 210
L++G I+V TPG L+DH+K ++ L + +++FDEADR+ ++GF ++ I
Sbjct: 365 AKALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVTYLVFDEADRMFDMGFEYQVRSI 419
Score = 150 (57.9 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 40/116 (34%), Positives = 65/116 (56%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 204
V GGG+ ++ L++G I+V TPG L+DH+K ++ L + +++FDEADR+ ++GF
Sbjct: 355 VYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVTYLVFDEADRMFDMGFE 413
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
++ R+IAS V RQ LL SAT +K+ L + L P+ +
Sbjct: 414 YQV---------RSIAS-----HV-RPDRQTLLFSATFRKKIEKLARDILIDPIRV 454
>CGD|CAL0001091 [details] [associations]
symbol:orf19.672 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116 RefSeq:XP_713805.1
RefSeq:XP_713845.1 ProteinModelPortal:Q59W52 GeneID:3644491
GeneID:3644552 KEGG:cal:CaO19.672 KEGG:cal:CaO19.8289
Uniprot:Q59W52
Length = 581
Score = 281 (104.0 bits), Expect = 7.4e-24, P = 7.4e-24
Identities = 68/212 (32%), Positives = 125/212 (58%)
Query: 53 RLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSP---RIDR-S 108
+LG+E PT VQ +IP+ L RDV+ A TG+GKT+A+L P++N++ S + ++ S
Sbjct: 185 QLGYEEPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLNYILSIDENYLKYEKIS 244
Query: 109 SGTFALVLVPTSELCLLVYEILQKLLHRFRW-IVPGYVMGGGNRSKEKARL-RKGISILV 166
+ L+L PT EL L + + +K + + ++P ++GG + ++ + G+ ++V
Sbjct: 245 NEPVGLILAPTRELALQITKEAEKFCKKLGYQVLP--IIGGHHYQDTINKIDQTGVHLIV 302
Query: 167 ATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS-RNIASIGEG 225
ATPG L+D ++ L + ++ DEADR++++GF K++ ++LD L + + ++S +G
Sbjct: 303 ATPGRLVDSIERKIVDL-SKCYCLVMDEADRMIDMGFEKDLNKVLDKLPTEKQLSSTIDG 361
Query: 226 NEVSNVKRQNLLLSATLNEKVNHLTKISLETP 257
KR ++ +AT++ V LTK L P
Sbjct: 362 RIFHLEKRSTMMFTATISPTVEKLTKKYLIDP 393
>UNIPROTKB|Q59W52 [details] [associations]
symbol:PRP28 "Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28" species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116
RefSeq:XP_713805.1 RefSeq:XP_713845.1 ProteinModelPortal:Q59W52
GeneID:3644491 GeneID:3644552 KEGG:cal:CaO19.672
KEGG:cal:CaO19.8289 Uniprot:Q59W52
Length = 581
Score = 281 (104.0 bits), Expect = 7.4e-24, P = 7.4e-24
Identities = 68/212 (32%), Positives = 125/212 (58%)
Query: 53 RLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSP---RIDR-S 108
+LG+E PT VQ +IP+ L RDV+ A TG+GKT+A+L P++N++ S + ++ S
Sbjct: 185 QLGYEEPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLNYILSIDENYLKYEKIS 244
Query: 109 SGTFALVLVPTSELCLLVYEILQKLLHRFRW-IVPGYVMGGGNRSKEKARL-RKGISILV 166
+ L+L PT EL L + + +K + + ++P ++GG + ++ + G+ ++V
Sbjct: 245 NEPVGLILAPTRELALQITKEAEKFCKKLGYQVLP--IIGGHHYQDTINKIDQTGVHLIV 302
Query: 167 ATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS-RNIASIGEG 225
ATPG L+D ++ L + ++ DEADR++++GF K++ ++LD L + + ++S +G
Sbjct: 303 ATPGRLVDSIERKIVDL-SKCYCLVMDEADRMIDMGFEKDLNKVLDKLPTEKQLSSTIDG 361
Query: 226 NEVSNVKRQNLLLSATLNEKVNHLTKISLETP 257
KR ++ +AT++ V LTK L P
Sbjct: 362 RIFHLEKRSTMMFTATISPTVEKLTKKYLIDP 393
>UNIPROTKB|Q8TDD1 [details] [associations]
symbol:DDX54 "ATP-dependent RNA helicase DDX54"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=IDA] [GO:0005102
"receptor binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006396
"RNA processing" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0030520 "intracellular estrogen receptor signaling pathway"
evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 GO:GO:0030520 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
EMBL:AF478457 EMBL:AC089999 EMBL:AY148094 EMBL:BC005848
IPI:IPI00152510 IPI:IPI00879999 RefSeq:NP_001104792.1
RefSeq:NP_076977.3 UniGene:Hs.506861 ProteinModelPortal:Q8TDD1
SMR:Q8TDD1 IntAct:Q8TDD1 STRING:Q8TDD1 PhosphoSite:Q8TDD1
DMDM:46576615 SWISS-2DPAGE:Q8TDD1 PaxDb:Q8TDD1 PRIDE:Q8TDD1
DNASU:79039 Ensembl:ENST00000306014 Ensembl:ENST00000314045
GeneID:79039 KEGG:hsa:79039 UCSC:uc001tup.3 UCSC:uc001tuq.4
CTD:79039 GeneCards:GC12M113595 HGNC:HGNC:20084 HPA:HPA028244
MIM:611665 neXtProt:NX_Q8TDD1 PharmGKB:PA134992026
HOVERGEN:HBG051333 InParanoid:Q8TDD1 ChiTaRS:DDX54 GenomeRNAi:79039
NextBio:67773 ArrayExpress:Q8TDD1 Bgee:Q8TDD1 CleanEx:HS_DDX54
Genevestigator:Q8TDD1 GermOnline:ENSG00000123064 Uniprot:Q8TDD1
Length = 881
Score = 284 (105.0 bits), Expect = 8.8e-24, P = 8.8e-24
Identities = 60/175 (34%), Positives = 105/175 (60%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F S+GL + + ++ G++ PT +Q + IPVIL G+DV+ A TG+GKT +L P+
Sbjct: 98 FQSMGLSYPVFKGIMKK-GYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFE 156
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L+++S + +G AL+L PT EL L + ++L +F + ++GG + A
Sbjct: 157 RLKTHSAQ----TGARALILSPTRELALQTLKFTKEL-GKFTGLKTALILGGDRMEDQFA 211
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 211
L + I++ATPG L+ H+ S ++ +++FDEADR+ E+GF ++++EI+
Sbjct: 212 ALHENPDIIIATPGRLV-HVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEII 265
Score = 157 (60.3 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 46/156 (29%), Positives = 76/156 (48%)
Query: 132 KLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWII 191
K L +F + ++GG + A L + I++ATPG L+ H+ S ++ +++
Sbjct: 187 KELGKFTGLKTALILGGDRMEDQFAALHENPDIIIATPGRLV-HVAVEMSLKLQSVEYVV 245
Query: 192 FDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTK 251
FDEADR+ E+GF ++++EI IA + G+ Q +L SATL + + +
Sbjct: 246 FDEADRLFEMGFAEQLQEI--------IARLPGGH-------QTVLFSATLPKLLVEFAR 290
Query: 252 ISLETPVLIGLDEKKFPEDKSNVHFGSLESDVKEEV 287
L PVLI LD ++ F + D K V
Sbjct: 291 AGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAV 326
>MGI|MGI:1919297 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
Genevestigator:Q810A7 Uniprot:Q810A7
Length = 929
Score = 284 (105.0 bits), Expect = 9.7e-24, P = 9.7e-24
Identities = 59/176 (33%), Positives = 103/176 (58%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+ G D L Q+R+ + PT +Q Q +PV LSGRD++ A TG+GKT A++ P++
Sbjct: 255 FAHFGFDEQLMHQIRKS-EYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL--LHRFRWIVPGYVMGGGNRSKE 154
H+ ++ G A+++ PT ELC ++ ++ + R + V GGG+ ++
Sbjct: 314 HIMDQK-ELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVA---VYGGGSMWEQ 369
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 210
L++G I+V TPG L+DH+K ++ L + +++FDEADR+ ++GF ++ I
Sbjct: 370 AKALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFEYQVRSI 424
Score = 150 (57.9 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 40/116 (34%), Positives = 65/116 (56%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 204
V GGG+ ++ L++G I+V TPG L+DH+K ++ L + +++FDEADR+ ++GF
Sbjct: 360 VYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFE 418
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
++ R+IAS V RQ LL SAT +K+ L + L P+ +
Sbjct: 419 YQV---------RSIAS-----HV-RPDRQTLLFSATFRKKIEKLARDILIDPIRV 459
>RGD|1304909 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
Length = 929
Score = 284 (105.0 bits), Expect = 9.7e-24, P = 9.7e-24
Identities = 59/176 (33%), Positives = 103/176 (58%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+ G D L Q+R+ + PT +Q Q +PV LSGRD++ A TG+GKT A++ P++
Sbjct: 255 FAHFGFDEQLMHQIRKS-EYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL--LHRFRWIVPGYVMGGGNRSKE 154
H+ ++ G A+++ PT ELC ++ ++ + R + V GGG+ ++
Sbjct: 314 HIMDQK-ELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVA---VYGGGSMWEQ 369
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 210
L++G I+V TPG L+DH+K ++ L + +++FDEADR+ ++GF ++ I
Sbjct: 370 AKALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFEYQVRSI 424
Score = 150 (57.9 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 40/116 (34%), Positives = 65/116 (56%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 204
V GGG+ ++ L++G I+V TPG L+DH+K ++ L + +++FDEADR+ ++GF
Sbjct: 360 VYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFE 418
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
++ R+IAS V RQ LL SAT +K+ L + L P+ +
Sbjct: 419 YQV---------RSIAS-----HV-RPDRQTLLFSATFRKKIEKLARDILIDPIRV 459
>UNIPROTKB|E2RFF1 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
Length = 933
Score = 284 (105.0 bits), Expect = 9.7e-24, P = 9.7e-24
Identities = 59/176 (33%), Positives = 103/176 (58%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+ G D L Q+R+ + PT +Q Q +PV LSGRD++ A TG+GKT A++ P++
Sbjct: 255 FAHFGFDEQLMHQIRKS-EYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL--LHRFRWIVPGYVMGGGNRSKE 154
H+ ++ G A+++ PT ELC ++ ++ + R + V GGG+ ++
Sbjct: 314 HIMDQK-ELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVA---VYGGGSMWEQ 369
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 210
L++G I+V TPG L+DH+K ++ L + +++FDEADR+ ++GF ++ I
Sbjct: 370 AKALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFEYQVRSI 424
Score = 150 (57.9 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 40/116 (34%), Positives = 65/116 (56%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 204
V GGG+ ++ L++G I+V TPG L+DH+K ++ L + +++FDEADR+ ++GF
Sbjct: 360 VYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFE 418
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
++ R+IAS V RQ LL SAT +K+ L + L P+ +
Sbjct: 419 YQV---------RSIAS-----HV-RPDRQTLLFSATFRKKIEKLARDILIDPIRV 459
>UNIPROTKB|Q86XP3 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
Ensembl:ENST00000389924 Ensembl:ENST00000457800
Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
Genevestigator:Q86XP3 Uniprot:Q86XP3
Length = 938
Score = 284 (105.0 bits), Expect = 9.8e-24, P = 9.8e-24
Identities = 59/176 (33%), Positives = 103/176 (58%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+ G D L Q+R+ + PT +Q Q +PV LSGRD++ A TG+GKT A++ P++
Sbjct: 255 FAHFGFDEQLMHQIRKS-EYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL--LHRFRWIVPGYVMGGGNRSKE 154
H+ ++ G A+++ PT ELC ++ ++ + R + V GGG+ ++
Sbjct: 314 HIMDQK-ELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVA---VYGGGSMWEQ 369
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 210
L++G I+V TPG L+DH+K ++ L + +++FDEADR+ ++GF ++ I
Sbjct: 370 AKALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFEYQVRSI 424
Score = 150 (57.9 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 40/116 (34%), Positives = 65/116 (56%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 204
V GGG+ ++ L++G I+V TPG L+DH+K ++ L + +++FDEADR+ ++GF
Sbjct: 360 VYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFE 418
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
++ R+IAS V RQ LL SAT +K+ L + L P+ +
Sbjct: 419 YQV---------RSIAS-----HV-RPDRQTLLFSATFRKKIEKLARDILIDPIRV 459
>UNIPROTKB|F1RSJ7 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
Length = 941
Score = 284 (105.0 bits), Expect = 9.9e-24, P = 9.9e-24
Identities = 59/176 (33%), Positives = 103/176 (58%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+ G D L Q+R+ + PT +Q Q +PV LSGRD++ A TG+GKT A++ P++
Sbjct: 255 FAHFGFDEQLMHQIRKS-EYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL--LHRFRWIVPGYVMGGGNRSKE 154
H+ ++ G A+++ PT ELC ++ ++ + R + V GGG+ ++
Sbjct: 314 HIMDQK-ELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVA---VYGGGSMWEQ 369
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 210
L++G I+V TPG L+DH+K ++ L + +++FDEADR+ ++GF ++ I
Sbjct: 370 AKALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFEYQVRSI 424
Score = 150 (57.9 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 40/116 (34%), Positives = 65/116 (56%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 204
V GGG+ ++ L++G I+V TPG L+DH+K ++ L + +++FDEADR+ ++GF
Sbjct: 360 VYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFE 418
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
++ R+IAS V RQ LL SAT +K+ L + L P+ +
Sbjct: 419 YQV---------RSIAS-----HV-RPDRQTLLFSATFRKKIEKLARDILIDPIRV 459
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 284 (105.0 bits), Expect = 1.0e-23, P = 1.0e-23
Identities = 59/176 (33%), Positives = 103/176 (58%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+ G D L Q+R+ + PT +Q Q +PV LSGRD++ A TG+GKT A++ P++
Sbjct: 255 FAHFGFDEQLMHQIRKS-EYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL--LHRFRWIVPGYVMGGGNRSKE 154
H+ ++ G A+++ PT ELC ++ ++ + R + V GGG+ ++
Sbjct: 314 HIMDQK-ELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVA---VYGGGSMWEQ 369
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 210
L++G I+V TPG L+DH+K ++ L + +++FDEADR+ ++GF ++ I
Sbjct: 370 AKALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFEYQVRSI 424
Score = 150 (57.9 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 40/116 (34%), Positives = 65/116 (56%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 204
V GGG+ ++ L++G I+V TPG L+DH+K ++ L + +++FDEADR+ ++GF
Sbjct: 360 VYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFE 418
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
++ R+IAS V RQ LL SAT +K+ L + L P+ +
Sbjct: 419 YQV---------RSIAS-----HV-RPDRQTLLFSATFRKKIEKLARDILIDPIRV 459
>ZFIN|ZDB-GENE-040825-3 [details] [associations]
symbol:ddx56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
56" species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040825-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14810 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 CTD:54606 HOVERGEN:HBG051334
EMBL:CR394525 EMBL:AY648812 IPI:IPI00491475 RefSeq:NP_001003876.1
UniGene:Dr.79779 STRING:Q6DRE7 Ensembl:ENSDART00000034555
GeneID:445399 KEGG:dre:445399 InParanoid:Q6DRE7 NextBio:20832104
Uniprot:Q6DRE7
Length = 557
Score = 279 (103.3 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 78/251 (31%), Positives = 131/251 (52%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F +GLD L L + LG+ PT +Q +AIP+ L G+D+L A TG+GKT AY P+I
Sbjct: 8 FHEMGLDDRLLKALAD-LGWSQPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAVPLIQ 66
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL-HRFRWIVPGYVMGGGNRSKEK 155
+ + S + R A+VLVPT EL V ++++L + R + + G + S +K
Sbjct: 67 RVLT-SKQTVREQAVRAVVLVPTKELGQQVQTMIRQLTAYCSRDVRVADISGKADLSAQK 125
Query: 156 ARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 215
L + I+V+TP + H+ + LH++L ++ DEAD + GF +++ +L
Sbjct: 126 PILMEKPDIVVSTPSRIQAHINAQNLQLHSSLEMLVIDEADLLFSFGFEADLKNLLC--- 182
Query: 216 SRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKSNVH 275
++ I Q L+SATLN+ V L ++ L PV + L + P D S +
Sbjct: 183 --HLPKI----------YQAFLMSATLNDDVQALKELVLHNPVTLKLQGSQLP-DSSQLQ 229
Query: 276 FGSLESDVKEE 286
S++ + +++
Sbjct: 230 QFSIKCEEEDK 240
>ASPGD|ASPL0000055571 [details] [associations]
symbol:AN1266 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000017
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
OMA:SVVAPEI HOGENOM:HOG000007229 OrthoDB:EOG40CMR1
RefSeq:XP_658870.1 ProteinModelPortal:Q5BDW4
EnsemblFungi:CADANIAT00001356 GeneID:2877043 KEGG:ani:AN1266.2
Uniprot:Q5BDW4
Length = 1173
Score = 285 (105.4 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 76/228 (33%), Positives = 121/228 (53%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
+S GL D + ++LGF + T +QAQAIP I+SGRDV+ A TG+GKT+A+L P+
Sbjct: 543 WSQCGLGIQTLDVI-DKLGFASLTSIQAQAIPAIMSGRDVIGVAKTGSGKTMAFLIPMFR 601
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRW-IVPGYVMGGGNRSKEK 155
H++ P ++ G L++ PT EL +++ + L V Y GG +
Sbjct: 602 HIKDQRP-LENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAY--GGAPIKDQI 658
Query: 156 ARLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILD 212
A L++G I+V TPG ++D L + + TNLR +++ DEADR+ ++GF ++ +IL
Sbjct: 659 AELKRGAEIIVCTPGRMIDLLAANAGRV-TNLRRVTYVVLDEADRMFDMGFEPQVMKILS 717
Query: 213 ILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
N+ RQ +L SAT + L + +L P+ I
Sbjct: 718 -----NVRP----------DRQTVLFSATFPRNMEALARKTLTKPIEI 750
>UNIPROTKB|G3V0G3 [details] [associations]
symbol:DDX56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 56,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
EMBL:CH471128 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 EMBL:AC004938
UniGene:Hs.654762 HGNC:HGNC:18193 ProteinModelPortal:G3V0G3
SMR:G3V0G3 Ensembl:ENST00000421223 ArrayExpress:G3V0G3 Bgee:G3V0G3
Uniprot:G3V0G3
Length = 375
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 75/236 (31%), Positives = 121/236 (51%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F +GLD L + + LG+ PT +Q +AIP+ L G+D+L A TG+GKT AY P++
Sbjct: 9 FEHMGLDPRLLQAVTD-LGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQ 67
Query: 97 ---HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL-HRFRWIVPGYVMGGGNRS 152
H ++ P ++++ LVLVPT EL ++Q+L + R + V +
Sbjct: 68 LLLHRKATGPVVEQA--VRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSV 125
Query: 153 KEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 212
++A L + ++V TP +L HL+ S L +L ++ DEAD + GF +E++ +L
Sbjct: 126 SQRAVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLC 185
Query: 213 ILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFP 268
++ I Q L+SAT NE V L ++ L PV + L E + P
Sbjct: 186 -----HLPRI----------YQAFLMSATFNEDVQALKELILHNPVTLKLQESQLP 226
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 283 (104.7 bits), Expect = 1.2e-23, P = 1.2e-23
Identities = 59/176 (33%), Positives = 102/176 (57%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+ G D L Q+R+ + PT +Q Q +P+ LSGRD + A TG+GKT A++ PI+
Sbjct: 259 FAHFGFDEQLMHQIRKS-EYTQPTPIQCQGVPIALSGRDAIGIAKTGSGKTAAFIWPILV 317
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL--LHRFRWIVPGYVMGGGNRSKE 154
H+ ++ G A+++ PT ELC ++ ++ + R + V GGG+ ++
Sbjct: 318 HIMDQK-ELEPGEGPIAVIVCPTRELCQQIHAECKRFGKAYGLRSVA---VYGGGSMWEQ 373
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 210
L++G I+V TPG L+DH+K ++ L + +++FDEADR+ ++GF ++ I
Sbjct: 374 AKALQEGAEIVVCTPGRLIDHVKKKATSLQ-RVTFLVFDEADRMFDMGFEYQVRSI 428
Score = 151 (58.2 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 40/116 (34%), Positives = 65/116 (56%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 204
V GGG+ ++ L++G I+V TPG L+DH+K ++ L + +++FDEADR+ ++GF
Sbjct: 364 VYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQ-RVTFLVFDEADRMFDMGFE 422
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
++ R+IAS V RQ LL SAT +K+ L + L P+ +
Sbjct: 423 YQV---------RSIAS-----HV-RPDRQTLLFSATFRKKIEKLARDILVDPIRV 463
>POMBASE|SPBC17D1.06 [details] [associations]
symbol:dbp3 "ATP-dependent RNA helicase Dbp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
"ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
Uniprot:Q10202
Length = 578
Score = 279 (103.3 bits), Expect = 1.2e-23, P = 1.2e-23
Identities = 82/219 (37%), Positives = 115/219 (52%)
Query: 49 QLRERL-GFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDR 107
+LRE L ++ PT +QA P +L+GRDV+ A TG+GKTVA+ P + +L S D
Sbjct: 177 KLREGLKNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLS---DN 233
Query: 108 SSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVA 167
S LV+ PT EL + YE L L+ + V+ GG E+AR K S+++
Sbjct: 234 KSVPRVLVVSPTRELAIQTYENLNSLIQGTN--LKAVVVYGGAPKSEQARAAKNASVIIG 291
Query: 168 TPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNE 227
TPG LLD L + S + + +++ DEADR+L+ GF ++I RNI S +
Sbjct: 292 TPGRLLD-LINDGSIDCSQVGYLVLDEADRMLDTGFEQDI---------RNIIS-HTPDP 340
Query: 228 VSNVKRQNLLLSATLNEKVNHLTKISLETPV--LIGLDE 264
N RQ + SAT E V L L+ PV IG DE
Sbjct: 341 TRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDE 379
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 275 (101.9 bits), Expect = 1.2e-23, P = 1.2e-23
Identities = 63/174 (36%), Positives = 100/174 (57%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+ LD L L+ +G PT +Q QA+P+ L+G+D++ ++ TG+GKT+A+L P +
Sbjct: 3 FTDFSLDQRLLQSLKH-MGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQ 61
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
+ S R L+L+PT EL VY L+ L+ ++ V+GG N + +
Sbjct: 62 RV--ISTRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAIS-VLGGENFNDQAK 118
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 210
L K +VATPG + DHL+ + FL+ L +I DEADR+L+LGF +++ I
Sbjct: 119 ALAKEPHFIVATPGRIADHLEQKNLFLN-GLELLILDEADRMLDLGFAPQLKAI 171
Score = 176 (67.0 bits), Expect = 6.7e-11, P = 6.7e-11
Identities = 51/151 (33%), Positives = 82/151 (54%)
Query: 114 LVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLL 173
L+L+PT EL VY L+ L+ ++ V+GG N + + L K +VATPG +
Sbjct: 77 LILLPTRELAHQVYSQLRLLVANTQYKAIS-VLGGENFNDQAKALAKEPHFIVATPGRIA 135
Query: 174 DHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKR 233
DHL+ + FL+ L +I DEADR+L+LGF +++ I NE ++ KR
Sbjct: 136 DHLEQKNLFLN-GLELLILDEADRMLDLGFAPQLKAI---------------NEAADHKR 179
Query: 234 -QNLLLSATLNE-KVNHLTKISLETPVLIGL 262
Q L+ SATL+ ++N + L+ P+ + +
Sbjct: 180 RQTLMFSATLDHSEINEIAAALLKNPLHVAI 210
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 275 (101.9 bits), Expect = 1.2e-23, P = 1.2e-23
Identities = 63/174 (36%), Positives = 100/174 (57%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+ LD L L+ +G PT +Q QA+P+ L+G+D++ ++ TG+GKT+A+L P +
Sbjct: 3 FTDFSLDQRLLQSLKH-MGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQ 61
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
+ S R L+L+PT EL VY L+ L+ ++ V+GG N + +
Sbjct: 62 RV--ISTRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAIS-VLGGENFNDQAK 118
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 210
L K +VATPG + DHL+ + FL+ L +I DEADR+L+LGF +++ I
Sbjct: 119 ALAKEPHFIVATPGRIADHLEQKNLFLN-GLELLILDEADRMLDLGFAPQLKAI 171
Score = 176 (67.0 bits), Expect = 6.7e-11, P = 6.7e-11
Identities = 51/151 (33%), Positives = 82/151 (54%)
Query: 114 LVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLL 173
L+L+PT EL VY L+ L+ ++ V+GG N + + L K +VATPG +
Sbjct: 77 LILLPTRELAHQVYSQLRLLVANTQYKAIS-VLGGENFNDQAKALAKEPHFIVATPGRIA 135
Query: 174 DHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKR 233
DHL+ + FL+ L +I DEADR+L+LGF +++ I NE ++ KR
Sbjct: 136 DHLEQKNLFLN-GLELLILDEADRMLDLGFAPQLKAI---------------NEAADHKR 179
Query: 234 -QNLLLSATLNE-KVNHLTKISLETPVLIGL 262
Q L+ SATL+ ++N + L+ P+ + +
Sbjct: 180 RQTLMFSATLDHSEINEIAAALLKNPLHVAI 210
>UNIPROTKB|F1NQ09 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
IPI:IPI00819782 ProteinModelPortal:F1NQ09
Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
Length = 451
Score = 275 (101.9 bits), Expect = 1.2e-23, P = 1.2e-23
Identities = 68/168 (40%), Positives = 101/168 (60%)
Query: 53 RLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 112
+ GF+ PT +Q+QA P+IL G D++ A TGTGKT+AYL P HL S D+ G
Sbjct: 70 KTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQPIPKDKRGGPG 129
Query: 113 ALVLVPTSELCLLVY-EILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGH 171
LVL PT EL L V E L+ F+ I + GGG+R + + KG+ I++ATPG
Sbjct: 130 MLVLAPTRELALQVEAECLKYTYKGFKSIC---IYGGGDRKAQINVVTKGVDIVIATPGR 186
Query: 172 LLDHLKHTSSFLHT-NLRWIIFDEADRILELGFGKEIEEIL-DILGSR 217
L D ++F++ ++ +++ DEADR+L++GF +I +IL D+ R
Sbjct: 187 LND--LQMNNFINLKSITYLVLDEADRMLDMGFEPQIMKILIDVRPDR 232
Score = 131 (51.2 bits), Expect = 9.9e-06, P = 9.9e-06
Identities = 37/118 (31%), Positives = 67/118 (56%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHT-NLRWIIFDEADRILELGF 203
+ GGG+R + + KG+ I++ATPG L D L+ ++F++ ++ +++ DEADR+L++GF
Sbjct: 160 IYGGGDRKAQINVVTKGVDIVIATPGRLND-LQ-MNNFINLKSITYLVLDEADRMLDMGF 217
Query: 204 GKEIEEIL-DILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
+I +IL D+ RQ +++SAT + V L K L P+++
Sbjct: 218 EPQIMKILIDV----------------RPDRQTVMMSATWPDGVRRLAKSYLRNPMIV 259
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 283 (104.7 bits), Expect = 1.3e-23, P = 1.3e-23
Identities = 58/176 (32%), Positives = 103/176 (58%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+ G D L Q+R+ + PT +Q Q +PV +SGRD++ A TG+GKT A++ P++
Sbjct: 255 FARFGFDEQLMHQIRKS-EYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLI 313
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL--LHRFRWIVPGYVMGGGNRSKE 154
H+ ++ G A+++ PT ELC ++ ++ + R + V GGG+ ++
Sbjct: 314 HIMDQK-ELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVA---VYGGGSMWEQ 369
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 210
L++G I+V TPG L+DH+K ++ L + +++FDEADR+ ++GF ++ I
Sbjct: 370 AKALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVTYLVFDEADRMFDMGFEYQVRSI 424
Score = 150 (57.9 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 40/116 (34%), Positives = 65/116 (56%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 204
V GGG+ ++ L++G I+V TPG L+DH+K ++ L + +++FDEADR+ ++GF
Sbjct: 360 VYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVTYLVFDEADRMFDMGFE 418
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
++ R+IAS V RQ LL SAT +K+ L + L P+ +
Sbjct: 419 YQV---------RSIAS-----HV-RPDRQTLLFSATFRKKIEKLARDILIDPIRV 459
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 283 (104.7 bits), Expect = 1.3e-23, P = 1.3e-23
Identities = 58/176 (32%), Positives = 103/176 (58%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+ G D L Q+R+ + PT +Q Q +PV +SGRD++ A TG+GKT A++ P++
Sbjct: 257 FAHFGFDEQLMHQIRKS-EYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLI 315
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL--LHRFRWIVPGYVMGGGNRSKE 154
H+ ++ G A+++ PT ELC ++ ++ + R + V GGG+ ++
Sbjct: 316 HIMDQK-ELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVA---VYGGGSMWEQ 371
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 210
L++G I+V TPG L+DH+K ++ L + +++FDEADR+ ++GF ++ I
Sbjct: 372 AKALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVTYLVFDEADRMFDMGFEYQVRSI 426
Score = 150 (57.9 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 40/116 (34%), Positives = 65/116 (56%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 204
V GGG+ ++ L++G I+V TPG L+DH+K ++ L + +++FDEADR+ ++GF
Sbjct: 362 VYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVTYLVFDEADRMFDMGFE 420
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
++ R+IAS V RQ LL SAT +K+ L + L P+ +
Sbjct: 421 YQV---------RSIAS-----HV-RPDRQTLLFSATFRKKIEKLARDILIDPIRV 461
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 274 (101.5 bits), Expect = 1.5e-23, P = 1.5e-23
Identities = 69/174 (39%), Positives = 98/174 (56%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
FS L LD +L + L+++ GF PT +QA AIP L GRDVL +A TGTGKT AYL P +
Sbjct: 6 FSELELDESLLEALQDK-GFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
HL + PR +S L+L PT EL + V + ++L + + GG
Sbjct: 65 HLLDF-PR-KKSGPPRILILTPTRELAMQVSDHARELAKHTHLDI-ATITGGVAYMNHAE 121
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 210
+ I+VAT G LL ++K +F + +I DEADR+L++GF ++IE I
Sbjct: 122 VFSENQDIVVATTGRLLQYIKE-ENFDCRAVETLILDEADRMLDMGFAQDIEHI 174
>ASPGD|ASPL0000051195 [details] [associations]
symbol:AN1634 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 EMBL:BN001307
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000026 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:P09052
HOGENOM:HOG000268796 OMA:PIRNWKE RefSeq:XP_659238.1
ProteinModelPortal:Q5BCU6 EnsemblFungi:CADANIAT00008272
GeneID:2874876 KEGG:ani:AN1634.2 OrthoDB:EOG4KPXK0 Uniprot:Q5BCU6
Length = 782
Score = 281 (104.0 bits), Expect = 1.5e-23, P = 1.5e-23
Identities = 77/236 (32%), Positives = 126/236 (53%)
Query: 41 GLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQS 100
GL L + L +R+G++ PT +Q AIP+ + RD++ A TG+GKT A+L P++ ++
Sbjct: 352 GLPKRLLE-LVDRVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLCYIAE 410
Query: 101 YSPRID-----RSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEK 155
PRID ++ G +A+VL PT EL + +K + V V GG+ +E+
Sbjct: 411 L-PRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIV--GGHSFEEQ 467
Query: 156 A-RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214
A LR G I++ATPG L+D ++ L + ++I DEADR+++LGF + + +ILD L
Sbjct: 468 AYSLRNGAEIIIATPGRLVDCIERRMLVL-SQCCYVIMDEADRMIDLGFEEPVNKILDAL 526
Query: 215 GSRNIASIGEGNEVSNVK----------RQNLLLSATLNEKVNHLTKISLETPVLI 260
N E E S+ RQ ++ +AT+ V + + L P ++
Sbjct: 527 PVTNEKPDTEEAEDSSAMSRHLGSKDRYRQTMMYTATMPTAVERIARKYLRRPAIV 582
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 281 (104.0 bits), Expect = 1.5e-23, P = 1.5e-23
Identities = 62/157 (39%), Positives = 95/157 (60%)
Query: 55 GFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 114
GF PT +Q+QA P+ L GRD++ A TG+GKT+A+L P I H+ + P + G L
Sbjct: 403 GFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINA-QPVLREDDGPIVL 461
Query: 115 VLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLD 174
VL PT EL L + E K + I V GG ++ + A L+KG+ I++ATPG L+D
Sbjct: 462 VLAPTRELALQIQEETNKFGGTSQ-ISNTCVYGGASKHTQVAALKKGVEIVIATPGRLID 520
Query: 175 HLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 211
L+ + L + +++ DEADR+L++GF +I +I+
Sbjct: 521 ILESGKTNLR-RVTYLVLDEADRMLDMGFEPQIRKII 556
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 274 (101.5 bits), Expect = 1.7e-23, P = 1.7e-23
Identities = 82/249 (32%), Positives = 133/249 (53%)
Query: 39 SLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPII--- 95
S+GL + L ++ G++ T +Q +AIPVI G D+L +A TGTGKT A+ PI+
Sbjct: 5 SIGLSADLLKAVKA-CGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILDAI 63
Query: 96 ---NHL-QSYSPRIDRSSGTF---------ALVLVPTSELCLLVYEILQKLLHRFRWIVP 142
NH +S + D +S AL+L PT EL V + + K ++ I
Sbjct: 64 AKANHAAKSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNI-KQFSQYLPIKS 122
Query: 143 GYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELG 202
G V GGG + + L++G+ +LVATPG LL+HL + L + +++++ DEADR+L++G
Sbjct: 123 GVVYGGGKMASQTKMLKQGLDVLVATPGRLLEHLALRNVDL-SQVKFLVLDEADRMLDMG 181
Query: 203 FGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGL 262
F +IE++L L ++ K Q L+ SAT +++V L L++P I +
Sbjct: 182 FLTDIEKLL--LAVKH-------------KHQTLMFSATFSDRVKSLANQLLKSPKTISV 226
Query: 263 DEKKFPEDK 271
++ K
Sbjct: 227 SKENTTSGK 235
>UNIPROTKB|Q9KV52 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 273 (101.2 bits), Expect = 1.7e-23, P = 1.7e-23
Identities = 83/261 (31%), Positives = 139/261 (53%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+ GL + D L E+ GF T +QA A+PV+LSG+D+ A TGTGKT+A+L N
Sbjct: 11 FADFGLQPQVIDGL-EKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFN 69
Query: 97 HLQSYSPRIDRSSGTF--ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKE 154
HL + +P + + T A+++ PT EL + ++ + LL + GG + K+
Sbjct: 70 HLLT-TPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLAS-TGLKAALAYGGESYDKQ 127
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214
A+L+ G+ IL+ T G ++D K L+ +++ ++ DEADR+ +LGF K+I +
Sbjct: 128 LAKLQSGVDILIGTTGRIIDFYKQRVFNLN-HIQAVVLDEADRMFDLGFIKDIRFLF--- 183
Query: 215 GSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETP--VLIGLDEK---KFPE 269
R + E + R N+L SATL+ +V L + P V++ ++K + E
Sbjct: 184 --RRMP---EPKD-----RLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQE 233
Query: 270 D---KSNVH-FGSLESDVKEE 286
+ SN H L++ ++EE
Sbjct: 234 ELFYPSNEHKMALLQTLIEEE 254
>TIGR_CMR|VC_0305 [details] [associations]
symbol:VC_0305 "ATP-dependent RNA helicase RhlB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 273 (101.2 bits), Expect = 1.7e-23, P = 1.7e-23
Identities = 83/261 (31%), Positives = 139/261 (53%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+ GL + D L E+ GF T +QA A+PV+LSG+D+ A TGTGKT+A+L N
Sbjct: 11 FADFGLQPQVIDGL-EKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFN 69
Query: 97 HLQSYSPRIDRSSGTF--ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKE 154
HL + +P + + T A+++ PT EL + ++ + LL + GG + K+
Sbjct: 70 HLLT-TPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLAS-TGLKAALAYGGESYDKQ 127
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214
A+L+ G+ IL+ T G ++D K L+ +++ ++ DEADR+ +LGF K+I +
Sbjct: 128 LAKLQSGVDILIGTTGRIIDFYKQRVFNLN-HIQAVVLDEADRMFDLGFIKDIRFLF--- 183
Query: 215 GSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETP--VLIGLDEK---KFPE 269
R + E + R N+L SATL+ +V L + P V++ ++K + E
Sbjct: 184 --RRMP---EPKD-----RLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQE 233
Query: 270 D---KSNVH-FGSLESDVKEE 286
+ SN H L++ ++EE
Sbjct: 234 ELFYPSNEHKMALLQTLIEEE 254
>WB|WBGene00019245 [details] [associations]
symbol:sacy-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
NextBio:875413 Uniprot:Q9N5K1
Length = 630
Score = 278 (102.9 bits), Expect = 1.9e-23, P = 1.9e-23
Identities = 71/234 (30%), Positives = 125/234 (53%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F + +L + ++++ G PT +Q Q IPV LSGRD++ A+TG+GKT+ ++ P++
Sbjct: 191 FLEMKFPKSLLEFMQKQKGIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLVM 250
Query: 97 HLQSYSPRID--RSSGTFALVLVPTSELCLLVYEILQKLLHRF-RWIVP----GYVMGGG 149
++ RS G F L++VP+ EL +++++ ++ + +P G +GG
Sbjct: 251 FCLEQEMKLPFMRSEGPFGLIIVPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCIGGV 310
Query: 150 NRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNL-RWIIFDEADRILELGFGKEIE 208
++ +R GI I+VATPG L D L T ++ + R+++ DEADR+L++GF EI+
Sbjct: 311 PIGEQAKDVRDGIHIVVATPGRLSDML--TKKIINLEVCRYLVLDEADRMLDMGFEDEIK 368
Query: 209 EILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGL 262
I +RQ LL SAT+ K+ K +L P+++ +
Sbjct: 369 SIFYFF---------------KAQRQTLLFSATMPRKIQFFAKSALVKPIVVNV 407
>UNIPROTKB|Q5R7D1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
Length = 942
Score = 281 (104.0 bits), Expect = 2.1e-23, P = 2.1e-23
Identities = 59/176 (33%), Positives = 103/176 (58%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+ G D L Q+R+ + PT +Q Q +PV LSGRD++ A TG+GKT A++ P++
Sbjct: 255 FAHFGFDEQLMHQIRKS-EYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL--LHRFRWIVPGYVMGGGNRSKE 154
H+ ++ G A+++ PT ELC ++ ++ + R + V GGG+ ++
Sbjct: 314 HIMDQK-ELEPGDGPIAVIVCPTRELCQQIHAEGKRFGKAYNLRSVA---VYGGGSMWEQ 369
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 210
L++G I+V TPG L+DH+K ++ L + +++FDEADR+ ++GF ++ I
Sbjct: 370 AKALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFEYQVRSI 424
Score = 150 (57.9 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 40/116 (34%), Positives = 65/116 (56%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 204
V GGG+ ++ L++G I+V TPG L+DH+K ++ L + +++FDEADR+ ++GF
Sbjct: 360 VYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQ-RVSYLVFDEADRMFDMGFE 418
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
++ R+IAS V RQ LL SAT +K+ L + L P+ +
Sbjct: 419 YQV---------RSIAS-----HV-RPDRQTLLFSATFRKKIEKLARDILIDPIRV 459
>UNIPROTKB|Q3SZ40 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 HSSP:P60842 EMBL:BC103169
IPI:IPI00695179 RefSeq:NP_001029501.1 UniGene:Bt.48952
ProteinModelPortal:Q3SZ40 STRING:Q3SZ40 PRIDE:Q3SZ40
Ensembl:ENSBTAT00000014014 GeneID:508728 KEGG:bta:508728 CTD:54606
HOVERGEN:HBG051334 InParanoid:Q3SZ40 OrthoDB:EOG47H5PT
NextBio:20868656 Uniprot:Q3SZ40
Length = 546
Score = 276 (102.2 bits), Expect = 2.1e-23, P = 2.1e-23
Identities = 75/236 (31%), Positives = 124/236 (52%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F +GLD L + + LG+ PT +Q +AIP+ L G+D+L A TG+GKT AY P++
Sbjct: 9 FEHMGLDHRLLQAVTD-LGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQ 67
Query: 97 ---HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL-HRFRWIVPGYVMGGGNRS 152
H ++ P ++++ ALVLVPT EL ++Q+L + R I V + +
Sbjct: 68 LLLHRKATGPVVEQA--VRALVLVPTKELARQAQSMIQQLAAYCARDIRVANVSAAEDSA 125
Query: 153 KEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 212
++A L + ++V TP +L+HL+ + L ++ ++ DEAD + GF +E++ +L
Sbjct: 126 SQRAVLMEKPDVVVGTPSRILNHLQQDNLKLRDSMELLVVDEADLLFSFGFEEELKSLLC 185
Query: 213 ILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFP 268
++ I Q L+SAT NE V L ++ L PV + L E + P
Sbjct: 186 -----HLPRI----------YQAFLMSATFNEDVQALKELVLHNPVTLKLQESQLP 226
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 281 (104.0 bits), Expect = 2.2e-23, P = 2.2e-23
Identities = 60/176 (34%), Positives = 101/176 (57%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F G D L + ++ E PT +Q QAIP+ LSGRD++ A TG+GKT ++ P I+
Sbjct: 307 FGHYGFDDILLQAIAKQ-SIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSIS 365
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
H+ P +++ G AL L PT EL +Y K F+ + + GG ++ ++
Sbjct: 366 HIMD-QPYLEKGDGPIALFLAPTRELAHQIYLETLKYSKYFK-LKTTVLYGGVSKQQQCK 423
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 212
L+ G I+VATPG L+D +K ++ L+ + +++ DEAD++ + GFG ++ I++
Sbjct: 424 ELKAGCEIIVATPGRLIDMIKLKATKLN-RVSYLVLDEADKMFDFGFGPQVLSIVN 478
Score = 131 (51.2 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 35/116 (30%), Positives = 59/116 (50%)
Query: 147 GGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 206
GG ++ ++ L+ G I+VATPG L+D +K ++ L+ + +++ DEAD++ + GFG +
Sbjct: 414 GGVSKQQQCKELKAGCEIIVATPGRLIDMIKLKATKLN-RVSYLVLDEADKMFDFGFGPQ 472
Query: 207 IEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGL 262
+ I+ N V RQ LL SAT V + L P+ I +
Sbjct: 473 VLSIV--------------NHV-RPDRQTLLFSATFKPNVEEFARTILSDPIKISI 513
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 278 (102.9 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 65/160 (40%), Positives = 95/160 (59%)
Query: 56 FEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALV 115
F+ PT +QAQ P+ LSGRD++ A TG+GKT+AYL P I H+ ++ P ++R G LV
Sbjct: 115 FKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHI-NHQPYLERGDGPICLV 173
Query: 116 LVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDH 175
L PT EL V ++ R I V GG + + L +G+ I +ATPG L+D
Sbjct: 174 LAPTRELAQQVQQVAFDYGKSSR-IKSTCVYGGAPKGPQIRDLERGVEICIATPGRLIDF 232
Query: 176 LKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILD 212
L+ TNLR +++ DEADR+L++GF +I +I+D
Sbjct: 233 LEVGK----TNLRRCTYLVLDEADRMLDMGFEPQIRKIVD 268
Score = 123 (48.4 bits), Expect = 0.00014, P = 0.00014
Identities = 39/121 (32%), Positives = 62/121 (51%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILEL 201
V GG + + L +G+ I +ATPG L+D L+ TNLR +++ DEADR+L++
Sbjct: 202 VYGGAPKGPQIRDLERGVEICIATPGRLIDFLEVGK----TNLRRCTYLVLDEADRMLDM 257
Query: 202 GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIG 261
GF +I +I+D + RQ L+ SAT ++V L + L+ V I
Sbjct: 258 GFEPQIRKIVDQI---------------RPDRQTLMWSATWPKEVRQLAEDFLQDYVQIN 302
Query: 262 L 262
+
Sbjct: 303 I 303
>ZFIN|ZDB-GENE-021220-2 [details] [associations]
symbol:ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
54" species:7955 "Danio rerio" [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021220-2 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14808
HOGENOM:HOG000246455 GeneTree:ENSGT00550000075100 CTD:79039
HOVERGEN:HBG051333 OrthoDB:EOG469QTB EMBL:CU929062 EMBL:FP236447
EMBL:AY099535 IPI:IPI00481864 RefSeq:NP_775375.1 UniGene:Dr.18320
STRING:Q8JGR2 Ensembl:ENSDART00000026416 Ensembl:ENSDART00000128587
GeneID:286777 KEGG:dre:286777 NextBio:20806437 Uniprot:Q8JGR2
Length = 862
Score = 280 (103.6 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 59/175 (33%), Positives = 105/175 (60%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F S+GL + + ++ G++ PT +Q + IPVIL G+DV+ A TG+GKT A+L P+
Sbjct: 80 FQSMGLSYPVYKGIMKK-GYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTAAFLVPLFE 138
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L++ P+ +G AL+L PT EL L + ++L +F + ++GG + + A
Sbjct: 139 KLKA--PQAQ--TGARALILTPTRELALQTMKFTKEL-GKFTGLRTALILGGDSMDDQFA 193
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 211
L + I++ TPG L+ H+ + ++ +++FDEADR+ E+GF ++++EI+
Sbjct: 194 ALHENPDIIIGTPGRLM-HVIQEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEII 247
Score = 160 (61.4 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 45/153 (29%), Positives = 76/153 (49%)
Query: 132 KLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWII 191
K L +F + ++GG + + A L + I++ TPG L+ H+ + ++ +++
Sbjct: 169 KELGKFTGLRTALILGGDSMDDQFAALHENPDIIIGTPGRLM-HVIQEMNLKLQSVEYVV 227
Query: 192 FDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTK 251
FDEADR+ E+GF ++++EI+ R + RQ LL SATL + + +
Sbjct: 228 FDEADRLFEMGFAEQLQEII-----RRLPDA----------RQTLLFSATLPKLIVEFAR 272
Query: 252 ISLETPVLIGLDEKKFPEDKSNVHFGSLESDVK 284
L PVLI LD ++ + F SL D K
Sbjct: 273 AGLTEPVLIRLDVDTKLSEQLKLSFFSLRLDDK 305
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 279 (103.3 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 59/175 (33%), Positives = 98/175 (56%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F G S + ++++ +E PT +Q QA+P++LSGRDV+ A TG+GKT A++ P+I
Sbjct: 230 FEDCGFSSQIMSAIKKQ-AYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIV 288
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
H+ P + R G ++ PT EL ++ +K + V V GG ++ ++
Sbjct: 289 HIMD-QPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSA-VYGGMSKHEQFK 346
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 211
L+ G I+VATPG L+D LK + +++ DEADR+ +LGF ++ I+
Sbjct: 347 ELKAGCEIVVATPGRLIDMLK-MKALTMMRASYLVLDEADRMFDLGFEPQVRSIV 400
Score = 132 (51.5 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 38/120 (31%), Positives = 60/120 (50%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 204
V GG ++ ++ L+ G I+VATPG L+D LK + +++ DEADR+ +LGF
Sbjct: 335 VYGGMSKHEQFKELKAGCEIVVATPGRLIDMLK-MKALTMMRASYLVLDEADRMFDLGFE 393
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDE 264
++ I +G+ RQ LL SAT+ KV L + L P+ + + E
Sbjct: 394 PQVRSI-----------VGQ----IRPDRQTLLFSATMPWKVEKLAREILSDPIRVTVGE 438
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 276 (102.2 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 67/160 (41%), Positives = 92/160 (57%)
Query: 55 GFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 114
G++ PT +QAQAIP IL G DV+ A TGTGKT AY P+I + S +PR L
Sbjct: 20 GYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVIQKMLS-TPR----GRVRTL 74
Query: 115 VLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLD 174
VL PT EL + E + L R R I + GG N ++ RLR G+ ++VA PG LLD
Sbjct: 75 VLAPTRELACQIAESFRSLGQRAR-IRECSIYGGVNMDQQIRRLRSGVDVVVACPGRLLD 133
Query: 175 HLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214
H+ + + + +I DEADR+ ++GF +I+ IL L
Sbjct: 134 HIWRGTIDI-CGVETLIIDEADRMFDMGFQPDIQSILKCL 172
Score = 136 (52.9 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 39/116 (33%), Positives = 59/116 (50%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 204
+ GG N ++ RLR G+ ++VA PG LLDH+ + + + +I DEADR+ ++GF
Sbjct: 104 IYGGVNMDQQIRRLRSGVDVVVACPGRLLDHIWRGTIDI-CGVETLIIDEADRMFDMGFQ 162
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
+I+ IL L + Q LL SAT+ +V LT + PV I
Sbjct: 163 PDIQSILKCLVQPH---------------QTLLFSATMPPEVRKLTLETQTNPVTI 203
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 281 (104.0 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 76/227 (33%), Positives = 117/227 (51%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
+S GL + + LG+E PT +QAQAIP I SGRDV+ A TG+GKT+A+L P+
Sbjct: 420 WSQCGLSAQTISVINS-LGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFR 478
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
H++ P + G A+++ PT EL + ++ + L I GG + A
Sbjct: 479 HIKDQRP-LKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLN-IRACCAYGGAPIKDQIA 536
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILDI 213
L++G I+V TPG ++D L + + TNL +++ DEADR+ +LGF ++ I++
Sbjct: 537 DLKRGAEIVVCTPGRMIDVLSANAGRV-TNLHRCTYLVLDEADRMFDLGFEPQVMRIIN- 594
Query: 214 LGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
NI RQ +L SAT + L + L+ PV I
Sbjct: 595 ----NIRP----------DRQTVLFSATFPRAMEALARKVLKKPVEI 627
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 274 (101.5 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 76/235 (32%), Positives = 123/235 (52%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F L S L ++ R+GFE T +QAQ IP+ L+ +DV+ A TGTGKT A+ P++
Sbjct: 5 FQDFQLSSDLTKAIK-RMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVE 63
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRW-IVPGYVMGGGNRSKEK 155
+ SP I A+V+ PT EL + V E L K+ R ++P Y GG + ++
Sbjct: 64 KINPESPNIQ------AIVIAPTRELAIQVSEELYKIGQDKRARVLPIY--GGQDIGRQI 115
Query: 156 ARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 215
L+K I+V TPG LLDH+ + L T + ++ DEAD +L +GF ++IE IL +
Sbjct: 116 RALKKNPHIIVGTPGRLLDHINRRTMRLQT-VNTVVLDEADEMLNMGFIEDIESILSNVP 174
Query: 216 SRNIASIGEGNEVSNVKR--QNLLLSAT-LNEKVNHLTKISLETPVLIGLDEKKF 267
+ + + + +KR + + + + K +T +++ L + KKF
Sbjct: 175 AEHQTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKF 229
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 277 (102.6 bits), Expect = 2.4e-23, P = 2.4e-23
Identities = 76/226 (33%), Positives = 125/226 (55%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F LGL L L E LG+E PT +Q+ +I +++G+D+L A TGTGKT A+ P++N
Sbjct: 8 FRELGLSENLLRALDE-LGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLN 66
Query: 97 HLQSYS-PRIDRSSGTFALVLVPTSELCLLVYEILQ---KLLHRFRWIVPGYVMGGGNRS 152
+ S + P+I LVL PT EL + V E K + F ++P Y GG +
Sbjct: 67 KVTSQTTPQI--------LVLAPTRELAVQVAEAFSSYAKFMKNFH-VLPIY--GGQSMQ 115
Query: 153 KEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 212
++ L++G ++V TPG ++DH++ + L T L+ ++ DEAD +L++GF +IE IL+
Sbjct: 116 QQLNALKRGPQVIVGTPGRVMDHMRRGTLKLET-LQALVLDEADEMLKMGFIDDIEWILE 174
Query: 213 ILG-SRNIA--SIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLE 255
R +A S ++ V ++L + ++ +H T S+E
Sbjct: 175 HTPPQRQLALFSATMPEQIKRVANKHLKNATNISIAASHTTVDSIE 220
Score = 138 (53.6 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 43/149 (28%), Positives = 73/149 (48%)
Query: 114 LVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLL 173
LVL PT EL + V E + + GG + ++ L++G ++V TPG ++
Sbjct: 77 LVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKRGPQVIVGTPGRVM 136
Query: 174 DHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKR 233
DH++ + L T L+ ++ DEAD +L++GF +IE IL E + +R
Sbjct: 137 DHMRRGTLKLET-LQALVLDEADEMLKMGFIDDIEWIL---------------EHTPPQR 180
Query: 234 QNLLLSATLNEKVNHLTKISLETPVLIGL 262
Q L SAT+ E++ + L+ I +
Sbjct: 181 QLALFSATMPEQIKRVANKHLKNATNISI 209
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 277 (102.6 bits), Expect = 2.5e-23, P = 2.5e-23
Identities = 67/175 (38%), Positives = 100/175 (57%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+ LGL + + + L + LG+E P+ +QA+ IP +L+GRDVL A TG+GKT A+ P+
Sbjct: 8 FADLGLKAPILEALND-LGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL-- 64
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
LQ+ P + LVL PT EL + V E + R + + GG +
Sbjct: 65 -LQNLDPELKAPQ---ILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 211
LR+G I+V TPG LLDHLK + L + L ++ DEAD +L +GF +++E I+
Sbjct: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDL-SKLSGLVLDEADEMLRMGFIEDVETIM 174
Score = 168 (64.2 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 49/144 (34%), Positives = 73/144 (50%)
Query: 114 LVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLL 173
LVL PT EL + V E + R + + GG + LR+G I+V TPG LL
Sbjct: 78 LVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLL 137
Query: 174 DHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKR 233
DHLK + L + L ++ DEAD +L +GF +++E I+ A I EG+
Sbjct: 138 DHLKRGTLDL-SKLSGLVLDEADEMLRMGFIEDVETIM--------AQIPEGH------- 181
Query: 234 QNLLLSATLNEKVNHLTKISLETP 257
Q L SAT+ E + +T+ ++ P
Sbjct: 182 QTALFSATMPEAIRRITRRFMKEP 205
>GENEDB_PFALCIPARUM|PFE0925c [details] [associations]
symbol:PFE0925c "snrnp protein, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
HSSP:Q58083 HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 281 (104.0 bits), Expect = 2.7e-23, P = 2.7e-23
Identities = 70/220 (31%), Positives = 116/220 (52%)
Query: 56 FEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSS--GTFA 113
+E PT +Q QAIP+ L RD++ A TG+GKT A++ P++++++ P +S G +A
Sbjct: 718 YEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQLPPLTYETSQDGPYA 777
Query: 114 LVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLL 173
LV+ P+ EL + +YE K V+GG N + LR+G+ I++ TPG L
Sbjct: 778 LVIAPSRELAIQIYEETNKFASYCSCRTVA-VVGGRNAEAQAFELRRGVEIVIGTPGRLQ 836
Query: 174 DHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEG---NEVSN 230
D L+ + L+ ++I DEADR++++GF + ILD + + N+ S + E
Sbjct: 837 DCLEKAYTVLN-QCNYVILDEADRMMDMGFEDTVHYILDKIPTSNLKSEDDALALQEEMM 895
Query: 231 VK------RQNLLLSATLNEKVNHLTKISLETPVLIGLDE 264
K R + SAT+ V L++ L P I + +
Sbjct: 896 TKAGHRLYRLTQMFSATMPPSVERLSRKYLRAPAYISIGD 935
>UNIPROTKB|Q8I0W7 [details] [associations]
symbol:PFE0925c "Snrnp protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 281 (104.0 bits), Expect = 2.7e-23, P = 2.7e-23
Identities = 70/220 (31%), Positives = 116/220 (52%)
Query: 56 FEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSS--GTFA 113
+E PT +Q QAIP+ L RD++ A TG+GKT A++ P++++++ P +S G +A
Sbjct: 718 YEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQLPPLTYETSQDGPYA 777
Query: 114 LVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLL 173
LV+ P+ EL + +YE K V+GG N + LR+G+ I++ TPG L
Sbjct: 778 LVIAPSRELAIQIYEETNKFASYCSCRTVA-VVGGRNAEAQAFELRRGVEIVIGTPGRLQ 836
Query: 174 DHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEG---NEVSN 230
D L+ + L+ ++I DEADR++++GF + ILD + + N+ S + E
Sbjct: 837 DCLEKAYTVLN-QCNYVILDEADRMMDMGFEDTVHYILDKIPTSNLKSEDDALALQEEMM 895
Query: 231 VK------RQNLLLSATLNEKVNHLTKISLETPVLIGLDE 264
K R + SAT+ V L++ L P I + +
Sbjct: 896 TKAGHRLYRLTQMFSATMPPSVERLSRKYLRAPAYISIGD 935
>ASPGD|ASPL0000077157 [details] [associations]
symbol:AN10557 species:162425 "Emericella nidulans"
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:0002183 "cytoplasmic translational initiation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0010628 "positive regulation of gene expression" evidence=IEA]
[GO:0097308 "cellular response to farnesol" evidence=IEP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GNWANAN EMBL:AACD01000077 ProteinModelPortal:C8V8H4 SMR:C8V8H4
PRIDE:C8V8H4 EnsemblFungi:CADANIAT00005985 Uniprot:C8V8H4
Length = 668
Score = 277 (102.6 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 74/238 (31%), Positives = 124/238 (52%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F++ LD L + ++ PT VQ +IP++++GRD++ A TG+GKT +L PI++
Sbjct: 188 FTNPPLDDHLISNIA-LARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILS 246
Query: 97 HLQSYSPRIDRSS--GTF---------ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYV 145
P S G F +L+L PT EL +++ +K +R W+ P V
Sbjct: 247 QAYQNGPAAPPPSAAGQFGRQRKAYPTSLILAPTRELVSQIFDEARKFAYR-SWVRPCVV 305
Query: 146 MGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGK 205
GG + + ++ +G +LVATPG L+D ++ L N++++I DEADR+L++GF
Sbjct: 306 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISL-VNIKYLILDEADRMLDMGFEP 364
Query: 206 EIEEILDILGSRNIASIGEGNEVSNVK-RQNLLLSATLNEKVNHLTKISLETPVLIGL 262
+I I+ EG ++ NV RQ L+ SAT + L + L+ V + +
Sbjct: 365 QIRRIV------------EGEDMPNVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSV 410
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 276 (102.2 bits), Expect = 3.1e-23, P = 3.1e-23
Identities = 82/230 (35%), Positives = 116/230 (50%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+SLGL L + E G+ PT VQ +AIP +L GRD++V A TGTGKT + PI+
Sbjct: 3 FASLGLSEALVRAI-EAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 97 HL---------QSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMG 147
L Q + PR R LVL PT EL V+E KL R V + G
Sbjct: 62 RLFPNGVPDKSQRHGPRQPR-----VLVLTPTRELAAQVHESF-KLYARDLKFVSACIFG 115
Query: 148 GGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEI 207
G + + + +G+ +LVA PG LLD L S +++ ++ DEADR+L++GF ++
Sbjct: 116 GVGMNPQVQAMSRGVDVLVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDV 174
Query: 208 EEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETP 257
+++L L + KRQNLL SAT + + L L P
Sbjct: 175 KKVLARLPA---------------KRQNLLFSATFSNDITSLAGKLLHNP 209
>FB|FBgn0037549 [details] [associations]
symbol:CG7878 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
Length = 703
Score = 277 (102.6 bits), Expect = 3.2e-23, P = 3.2e-23
Identities = 68/174 (39%), Positives = 104/174 (59%)
Query: 48 DQLRE--RLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYS-PR 104
D L E ++GF P+ +Q+QA P++L G D++ A TGTGKT+A+L P + H + S PR
Sbjct: 293 DMLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTPR 352
Query: 105 IDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISI 164
R G LVL PT EL L + ++K + FR + V GGGNR+ + + L +G I
Sbjct: 353 GTRG-GANVLVLAPTRELALQIEMEVKK--YSFRGMKAVCVYGGGNRNMQISDLERGAEI 409
Query: 165 LVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI-LDILGSR 217
++ TPG L D + + T + +++ DEADR+L++GF +I ++ LDI R
Sbjct: 410 IICTPGRLNDLIMANVIDVST-ITYLVLDEADRMLDMGFEPQIRKVMLDIRPDR 462
Score = 126 (49.4 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 37/127 (29%), Positives = 64/127 (50%)
Query: 135 HRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDE 194
+ FR + V GGGNR+ + + L +G I++ TPG L D + + T + +++ DE
Sbjct: 380 YSFRGMKAVCVYGGGNRNMQISDLERGAEIIICTPGRLNDLIMANVIDVST-ITYLVLDE 438
Query: 195 ADRILELGFGKEIEEI-LDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKIS 253
ADR+L++GF +I ++ LDI RQ ++ SAT V L +
Sbjct: 439 ADRMLDMGFEPQIRKVMLDI----------------RPDRQTIMTSATWPPGVRRLAQSY 482
Query: 254 LETPVLI 260
++ P+ +
Sbjct: 483 MKNPIQV 489
>ZFIN|ZDB-GENE-030131-6215 [details] [associations]
symbol:ddx23 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 23" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-6215
GO:GO:0005524 GO:GO:0003676 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
CTD:9416 HOGENOM:HOG000268796 HOVERGEN:HBG102054 OrthoDB:EOG46T312
EMBL:CR936486 EMBL:CR354537 EMBL:BC060524 IPI:IPI00509665
RefSeq:NP_956176.1 UniGene:Dr.78688 STRING:Q6P9Z2
Ensembl:ENSDART00000019620 GeneID:334283 KEGG:dre:334283
InParanoid:Q6P9Z2 NextBio:20810336 Uniprot:Q6P9Z2
Length = 807
Score = 278 (102.9 bits), Expect = 3.3e-23, P = 3.3e-23
Identities = 73/235 (31%), Positives = 127/235 (54%)
Query: 52 ERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDR---- 107
E+ G++ PT +Q QAIP+ L RD++ A TG+GKT A+L P++ + + P+IDR
Sbjct: 394 EKCGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL-PKIDRIEDS 452
Query: 108 SSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVA 167
G +A++L PT EL + E K + I V+GG +R + RLR G I++A
Sbjct: 453 DQGPYAIILAPTRELAQQIEEETIKF-GKPLGIRTVAVIGGISREDQGFRLRMGCEIVIA 511
Query: 168 TPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNE 227
TPG L+D L++ L + +++ DEADR++++GF ++++IL+ + N + E
Sbjct: 512 TPGRLIDVLENRYLVL-SRCTYVVLDEADRMIDMGFEPDVQKILEYIPVTNQKPDTDDAE 570
Query: 228 -----VSNVK------RQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDK 271
+ N + RQ ++ +AT+ V L + L P ++ + P ++
Sbjct: 571 DPEKMMQNFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHER 625
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 275 (101.9 bits), Expect = 3.5e-23, P = 3.5e-23
Identities = 63/164 (38%), Positives = 96/164 (58%)
Query: 52 ERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 111
+R F PT +QAQ PV LSG D++ A TG+GKT++YL P I H+ ++ P ++R G
Sbjct: 98 QRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHI-NHQPFLERGDGP 156
Query: 112 FALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGH 171
LVL PT EL V ++ + R + + GG + + L +G+ I +ATPG
Sbjct: 157 ICLVLAPTRELAQQVQQVAAEYSRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGR 215
Query: 172 LLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILD 212
L+D L+ TNLR +++ DEADR+L++GF +I +I+D
Sbjct: 216 LIDFLEAGK----TNLRRCTYLVLDEADRMLDMGFEPQIRKIVD 255
Score = 122 (48.0 bits), Expect = 0.00015, P = 0.00015
Identities = 40/145 (27%), Positives = 72/145 (49%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILEL 201
+ GG + + L +G+ I +ATPG L+D L+ TNLR +++ DEADR+L++
Sbjct: 189 IYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGK----TNLRRCTYLVLDEADRMLDM 244
Query: 202 GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIG 261
GF +I +I+D + RQ L+ SAT ++V L + L+ V I
Sbjct: 245 GFEPQIRKIVDQI---------------RPDRQTLMWSATWPKEVRQLAEDFLKEYVHIN 289
Query: 262 LDEKKFPEDKSNVHFGSLESDVKEE 286
+ + + + + + DV+++
Sbjct: 290 IGALELSANHNILQIVDVCHDVEKD 314
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 275 (101.9 bits), Expect = 3.7e-23, P = 3.7e-23
Identities = 63/164 (38%), Positives = 96/164 (58%)
Query: 52 ERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 111
+R F PT +QAQ PV LSG D++ A TG+GKT++YL P I H+ ++ P ++R G
Sbjct: 106 QRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHI-NHQPFLERGDGP 164
Query: 112 FALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGH 171
LVL PT EL V ++ + R + + GG + + L +G+ I +ATPG
Sbjct: 165 ICLVLAPTRELAQQVQQVAAEYSRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGR 223
Query: 172 LLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILD 212
L+D L+ TNLR +++ DEADR+L++GF +I +I+D
Sbjct: 224 LIDFLEAGK----TNLRRCTYLVLDEADRMLDMGFEPQIRKIVD 263
Score = 122 (48.0 bits), Expect = 0.00016, P = 0.00016
Identities = 40/145 (27%), Positives = 72/145 (49%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILEL 201
+ GG + + L +G+ I +ATPG L+D L+ TNLR +++ DEADR+L++
Sbjct: 197 IYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGK----TNLRRCTYLVLDEADRMLDM 252
Query: 202 GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIG 261
GF +I +I+D + RQ L+ SAT ++V L + L+ V I
Sbjct: 253 GFEPQIRKIVDQI---------------RPDRQTLMWSATWPKEVRQLAEDFLKEYVHIN 297
Query: 262 LDEKKFPEDKSNVHFGSLESDVKEE 286
+ + + + + + DV+++
Sbjct: 298 IGALELSANHNILQIVDVCHDVEKD 322
>MGI|MGI:2136689 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2136689 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 HOVERGEN:HBG100512 CTD:54555
OrthoDB:EOG4C87SC EMBL:BC099554 IPI:IPI00354271
RefSeq:NP_001020093.2 UniGene:Mm.388127 UniGene:Mm.440659
ProteinModelPortal:Q4FZF3 SMR:Q4FZF3 PhosphoSite:Q4FZF3
PRIDE:Q4FZF3 Ensembl:ENSMUST00000008004 GeneID:234374
KEGG:mmu:234374 UCSC:uc009lzu.1 InParanoid:Q4FZF3 NextBio:382139
Bgee:Q4FZF3 CleanEx:MM_DDX49 Genevestigator:Q4FZF3
GermOnline:ENSMUSG00000057788 Uniprot:Q4FZF3
Length = 480
Score = 272 (100.8 bits), Expect = 3.7e-23, P = 3.7e-23
Identities = 69/184 (37%), Positives = 105/184 (57%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+ +GL S L +Q R+ LG + PT VQ IP IL GRD L A TG+GKT A++ PI+
Sbjct: 4 FAEIGLSSWLVEQCRQ-LGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQ 62
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L S P G F LVL PT EL + E ++L + + ++GG + +
Sbjct: 63 KL-SEDPY-----GIFCLVLTPTRELAYQIAEQF-RVLGKPLGLKDCIIVGGMDMVAQAL 115
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELG---FGKEIEEILDI 213
L + +++ATPG L DHL+ +++F +++++ DEADR+LE G F ++E IL
Sbjct: 116 ELSRKPHVVIATPGRLADHLRSSNTFNMKKIQFLVMDEADRLLEQGCTDFTTDLETILAA 175
Query: 214 LGSR 217
+ +R
Sbjct: 176 VPAR 179
Score = 158 (60.7 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 46/151 (30%), Positives = 77/151 (50%)
Query: 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATP 169
G F LVL PT EL + E ++L + + ++GG + + L + +++ATP
Sbjct: 70 GIFCLVLTPTRELAYQIAEQF-RVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATP 128
Query: 170 GHLLDHLKHTSSFLHTNLRWIIFDEADRILELG---FGKEIEEILDILGSRNIASIGEGN 226
G L DHL+ +++F +++++ DEADR+LE G F ++E IL + +R
Sbjct: 129 GRLADHLRSSNTFNMKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVPAR--------- 179
Query: 227 EVSNVKRQNLLLSATLNEKVNHLTKISLETP 257
RQ LL SATL + + L ++ P
Sbjct: 180 ------RQTLLFSATLTDTLKELQGLATNEP 204
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 271 (100.5 bits), Expect = 3.7e-23, P = 3.7e-23
Identities = 66/174 (37%), Positives = 105/174 (60%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F +LGL S L + + E G++ T+VQ Q IP+ L G+D++ A TGTGKT A+ P++
Sbjct: 3 FDTLGLSSPLLNAITE-CGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLE 61
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L + P D+ ALV+ PT EL + V +QK +F + V GG N + ++
Sbjct: 62 QLAA-KPA-DKPL-LRALVMTPTRELAIQVCANIQKY-SQFLPLKTLAVYGGANMNPQRK 117
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 210
+ +G+ ILVATPG L D + + L +++ ++ DEADR+L+LGF ++IE++
Sbjct: 118 GVEQGVDILVATPGRLFDIIGQFNLDL-SSVTTLVIDEADRMLDLGFVRDIEKV 170
Score = 140 (54.3 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 39/120 (32%), Positives = 65/120 (54%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 204
V GG N + ++ + +G+ ILVATPG L D + + L +++ ++ DEADR+L+LGF
Sbjct: 106 VYGGANMNPQRKGVEQGVDILVATPGRLFDIIGQFNLDL-SSVTTLVIDEADRMLDLGFV 164
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDE 264
++IE++ R IA + Q +L SAT ++ V L+ L P + + E
Sbjct: 165 RDIEKV-----KRLIAPV----------HQTMLFSATYSDAVKQLSHKMLNQPQWVNVAE 209
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 271 (100.5 bits), Expect = 3.7e-23, P = 3.7e-23
Identities = 66/174 (37%), Positives = 105/174 (60%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F +LGL S L + + E G++ T+VQ Q IP+ L G+D++ A TGTGKT A+ P++
Sbjct: 3 FDTLGLSSPLLNAITE-CGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLE 61
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L + P D+ ALV+ PT EL + V +QK +F + V GG N + ++
Sbjct: 62 QLAA-KPA-DKPL-LRALVMTPTRELAIQVCANIQKY-SQFLPLKTLAVYGGANMNPQRK 117
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 210
+ +G+ ILVATPG L D + + L +++ ++ DEADR+L+LGF ++IE++
Sbjct: 118 GVEQGVDILVATPGRLFDIIGQFNLDL-SSVTTLVIDEADRMLDLGFVRDIEKV 170
Score = 140 (54.3 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 39/120 (32%), Positives = 65/120 (54%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 204
V GG N + ++ + +G+ ILVATPG L D + + L +++ ++ DEADR+L+LGF
Sbjct: 106 VYGGANMNPQRKGVEQGVDILVATPGRLFDIIGQFNLDL-SSVTTLVIDEADRMLDLGFV 164
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDE 264
++IE++ R IA + Q +L SAT ++ V L+ L P + + E
Sbjct: 165 RDIEKV-----KRLIAPV----------HQTMLFSATYSDAVKQLSHKMLNQPQWVNVAE 209
>UNIPROTKB|E1BGI6 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030331 "estrogen receptor binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0003714 "transcription corepressor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:DAAA02045421
IPI:IPI00690851 Ensembl:ENSBTAT00000029525 Uniprot:E1BGI6
Length = 877
Score = 278 (102.9 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 58/175 (33%), Positives = 105/175 (60%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F S+GL + + ++ G++ PT +Q + IP+IL G+DV+ A TG+GKT +L P+
Sbjct: 98 FQSMGLSYPVFKGIMKK-GYKVPTPIQRKTIPMILDGKDVVAMARTGSGKTACFLIPMFE 156
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L+++S + +G AL+L PT EL L + ++L +F + ++GG + A
Sbjct: 157 RLKTHSAQ----TGARALILSPTRELALQTMKFTKEL-GKFTGLKTALILGGDKMEDQFA 211
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 211
L + I++ATPG L+ H+ + ++ +++FDEADR+ E+GF ++++EI+
Sbjct: 212 ALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEII 265
Score = 151 (58.2 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 44/156 (28%), Positives = 75/156 (48%)
Query: 132 KLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWII 191
K L +F + ++GG + A L + I++ATPG L+ H+ + ++ +++
Sbjct: 187 KELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVV 245
Query: 192 FDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTK 251
FDEADR+ E+GF ++++EI I + G+ Q +L SATL + + +
Sbjct: 246 FDEADRLFEMGFAEQLQEI--------IGRLPGGH-------QTVLFSATLPKLLVEFAR 290
Query: 252 ISLETPVLIGLDEKKFPEDKSNVHFGSLESDVKEEV 287
L PVLI LD ++ F + D K V
Sbjct: 291 AGLTEPVLIRLDVDSKLNEQLKTSFFLVREDAKAAV 326
>TAIR|locus:2159527 [details] [associations]
symbol:STRS2 "STRESS RESPONSE SUPPRESSOR 2" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IEP] [GO:0009414 "response
to water deprivation" evidence=IMP] [GO:0009651 "response to salt
stress" evidence=IMP] [GO:0042991 "transcription factor import into
nucleus" evidence=RCA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009651 GO:GO:0009409 GO:GO:0009414 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268799 EMBL:AB006697 EMBL:AJ010473 EMBL:AY035114
EMBL:AY142638 IPI:IPI00534387 PIR:T51348 RefSeq:NP_196479.1
UniGene:At.47465 ProteinModelPortal:Q94C75 SMR:Q94C75 STRING:Q94C75
PRIDE:Q94C75 EnsemblPlants:AT5G08620.1 GeneID:830763
KEGG:ath:AT5G08620 GeneFarm:945 TAIR:At5g08620 InParanoid:Q94C75
OMA:RELACQA PhylomeDB:Q94C75 ProtClustDB:CLSN2687472
Genevestigator:Q94C75 GermOnline:AT5G08620 Uniprot:Q94C75
Length = 563
Score = 274 (101.5 bits), Expect = 3.9e-23, P = 3.9e-23
Identities = 77/209 (36%), Positives = 111/209 (53%)
Query: 52 ERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSP--RIDRSS 109
E GF+ T VQ +P+IL G+D+L A TGTGKTVA+L P I + P R +R
Sbjct: 96 EDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHP 155
Query: 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKG-ISILVAT 168
LV+ PT EL LL I V+GG E+ RL+K ILVAT
Sbjct: 156 PIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQILVAT 215
Query: 169 PGHLLDHLKHTSSFLHT--NLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGN 226
PG L DH+ +TS F ++ ++ DEAD +L++GF +EIE I IA++ +
Sbjct: 216 PGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERI--------IAAVPK-- 265
Query: 227 EVSNVKRQNLLLSATLNEKVNHLTKISLE 255
+RQ L SAT++++V + ++L+
Sbjct: 266 -----QRQTFLFSATVSDEVRQICHVALK 289
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 279 (103.3 bits), Expect = 3.9e-23, P = 3.9e-23
Identities = 61/175 (34%), Positives = 103/175 (58%)
Query: 41 GLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQS 100
G+ + L++ G+E PT +Q+QAIP I++GRD++ A TG+GKT+A+L P+ H+
Sbjct: 377 GISMKILTALKKH-GYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRHIMD 435
Query: 101 YSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRK 160
++ G A+++ PT EL L + + +K V V GG S++ A L++
Sbjct: 436 QRA-LEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVV-CVYGGTGISEQIAELKR 493
Query: 161 GISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILD 212
G I+V TPG ++D L + + TNLR +++ DEADR+ ++GF ++ I+D
Sbjct: 494 GAEIIVCTPGRMIDMLAANNGRV-TNLRRVTYVVLDEADRMFDMGFEPQVMRIVD 547
>RGD|1308685 [details] [associations]
symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 23"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005682 "U5 snRNP"
evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005886 "plasma membrane" evidence=IEA;ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1308685 GO:GO:0005524
GO:GO:0003676 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH474035 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE
RefSeq:NP_001100263.2 UniGene:Rn.2319 Ensembl:ENSRNOT00000055529
GeneID:300208 KEGG:rno:300208 NextBio:646540 Uniprot:G3V9M1
Length = 819
Score = 277 (102.6 bits), Expect = 4.3e-23, P = 4.3e-23
Identities = 76/247 (30%), Positives = 133/247 (53%)
Query: 43 DSTLCDQLRE---RLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQ 99
DS+L + E + G++ PT +Q QAIP+ L RD++ A TG+GKT A+L P++ +
Sbjct: 394 DSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWIT 453
Query: 100 SYSPRIDR----SSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEK 155
+ P+IDR G +A++L PT EL + E K + I V+GG +R +
Sbjct: 454 TL-PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKF-GKPLGIRTVAVIGGISREDQG 511
Query: 156 ARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 215
RLR G I++ATPG L+D L++ L + +++ DEADR++++GF ++++IL+ +
Sbjct: 512 FRLRMGCEIVIATPGRLIDVLENRYLVL-SRCTYVVLDEADRMIDMGFEPDVQKILEHMP 570
Query: 216 -SRNIASIGEGNE----VSNVK------RQNLLLSATLNEKVNHLTKISLETPVLIGLDE 264
S E + ++N + RQ ++ +AT+ V L + L P ++ +
Sbjct: 571 VSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGS 630
Query: 265 KKFPEDK 271
P ++
Sbjct: 631 AGKPHER 637
>UNIPROTKB|A6QLB2 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 HOGENOM:HOG000268796
HOVERGEN:HBG102054 OMA:PIRNWKE OrthoDB:EOG46T312 EMBL:DAAA02012954
EMBL:BC147902 IPI:IPI00866828 RefSeq:NP_001095672.1
UniGene:Bt.14027 STRING:A6QLB2 Ensembl:ENSBTAT00000029071
GeneID:537395 KEGG:bta:537395 InParanoid:A6QLB2 NextBio:20877127
Uniprot:A6QLB2
Length = 820
Score = 277 (102.6 bits), Expect = 4.4e-23, P = 4.4e-23
Identities = 76/247 (30%), Positives = 133/247 (53%)
Query: 43 DSTLCDQLRE---RLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQ 99
DS+L + E + G++ PT +Q QAIP+ L RD++ A TG+GKT A+L P++ +
Sbjct: 395 DSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWIT 454
Query: 100 SYSPRIDR----SSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEK 155
+ P+IDR G +A++L PT EL + E K + I V+GG +R +
Sbjct: 455 TL-PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKF-GKPLGIRTVAVIGGISREDQG 512
Query: 156 ARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 215
RLR G I++ATPG L+D L++ L + +++ DEADR++++GF ++++IL+ +
Sbjct: 513 FRLRMGCEIVIATPGRLIDVLENRYLVL-SRCTYVVLDEADRMIDMGFEPDVQKILEHMP 571
Query: 216 -SRNIASIGEGNE----VSNVK------RQNLLLSATLNEKVNHLTKISLETPVLIGLDE 264
S E + ++N + RQ ++ +AT+ V L + L P ++ +
Sbjct: 572 VSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGS 631
Query: 265 KKFPEDK 271
P ++
Sbjct: 632 AGKPHER 638
>UNIPROTKB|E2RTL6 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005682 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE EMBL:AAEX03015077
RefSeq:XP_851051.1 ProteinModelPortal:E2RTL6
Ensembl:ENSCAFT00000013894 GeneID:477624 KEGG:cfa:477624
NextBio:20853071 Uniprot:E2RTL6
Length = 820
Score = 277 (102.6 bits), Expect = 4.4e-23, P = 4.4e-23
Identities = 76/247 (30%), Positives = 133/247 (53%)
Query: 43 DSTLCDQLRE---RLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQ 99
DS+L + E + G++ PT +Q QAIP+ L RD++ A TG+GKT A+L P++ +
Sbjct: 395 DSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWIT 454
Query: 100 SYSPRIDR----SSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEK 155
+ P+IDR G +A++L PT EL + E K + I V+GG +R +
Sbjct: 455 TL-PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKF-GKPLGIRTVAVIGGISREDQG 512
Query: 156 ARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 215
RLR G I++ATPG L+D L++ L + +++ DEADR++++GF ++++IL+ +
Sbjct: 513 FRLRMGCEIVIATPGRLIDVLENRYLVL-SRCTYVVLDEADRMIDMGFEPDVQKILEHMP 571
Query: 216 -SRNIASIGEGNE----VSNVK------RQNLLLSATLNEKVNHLTKISLETPVLIGLDE 264
S E + ++N + RQ ++ +AT+ V L + L P ++ +
Sbjct: 572 VSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGS 631
Query: 265 KKFPEDK 271
P ++
Sbjct: 632 AGKPHER 638
>UNIPROTKB|Q9BUQ8 [details] [associations]
symbol:DDX23 "Probable ATP-dependent RNA helicase DDX23"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=IC]
[GO:0005682 "U5 snRNP" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:AF026402 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0005682 GO:GO:0003676 EMBL:CH471111 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
KO:K12858 EMBL:AK312379 EMBL:BC002366 IPI:IPI00006725
RefSeq:NP_004809.2 UniGene:Hs.130098 ProteinModelPortal:Q9BUQ8
SMR:Q9BUQ8 DIP:DIP-34974N IntAct:Q9BUQ8 MINT:MINT-1572793
STRING:Q9BUQ8 PhosphoSite:Q9BUQ8 DMDM:160385708 PaxDb:Q9BUQ8
PRIDE:Q9BUQ8 DNASU:9416 Ensembl:ENST00000308025 GeneID:9416
KEGG:hsa:9416 UCSC:uc001rsm.3 CTD:9416 GeneCards:GC12M049223
HGNC:HGNC:17347 HPA:HPA038680 MIM:612172 neXtProt:NX_Q9BUQ8
PharmGKB:PA134934941 HOGENOM:HOG000268796 HOVERGEN:HBG102054
InParanoid:Q9BUQ8 OMA:PIRNWKE OrthoDB:EOG46T312 PhylomeDB:Q9BUQ8
GenomeRNAi:9416 NextBio:35278 ArrayExpress:Q9BUQ8 Bgee:Q9BUQ8
CleanEx:HS_DDX23 Genevestigator:Q9BUQ8 GermOnline:ENSG00000174243
Uniprot:Q9BUQ8
Length = 820
Score = 277 (102.6 bits), Expect = 4.4e-23, P = 4.4e-23
Identities = 76/247 (30%), Positives = 133/247 (53%)
Query: 43 DSTLCDQLRE---RLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQ 99
DS+L + E + G++ PT +Q QAIP+ L RD++ A TG+GKT A+L P++ +
Sbjct: 395 DSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWIT 454
Query: 100 SYSPRIDR----SSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEK 155
+ P+IDR G +A++L PT EL + E K + I V+GG +R +
Sbjct: 455 TL-PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKF-GKPLGIRTVAVIGGISREDQG 512
Query: 156 ARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 215
RLR G I++ATPG L+D L++ L + +++ DEADR++++GF ++++IL+ +
Sbjct: 513 FRLRMGCEIVIATPGRLIDVLENRYLVL-SRCTYVVLDEADRMIDMGFEPDVQKILEHMP 571
Query: 216 -SRNIASIGEGNE----VSNVK------RQNLLLSATLNEKVNHLTKISLETPVLIGLDE 264
S E + ++N + RQ ++ +AT+ V L + L P ++ +
Sbjct: 572 VSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGS 631
Query: 265 KKFPEDK 271
P ++
Sbjct: 632 AGKPHER 638
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 275 (101.9 bits), Expect = 4.4e-23, P = 4.4e-23
Identities = 68/187 (36%), Positives = 103/187 (55%)
Query: 29 KEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTV 88
K +FA F + D L ++ F PT +Q Q P+ LSGRD++ A TG+GKT+
Sbjct: 89 KPVFA---FHHANFPQYVMDVLMDQ-HFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTL 144
Query: 89 AYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGG 148
AYL P I H+ ++ P ++R G LVL PT EL V ++ R + + GG
Sbjct: 145 AYLLPAIVHI-NHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSR-LKSTCIYGG 202
Query: 149 GNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGK 205
+ + L +G+ I +ATPG L+D L+ TNLR +++ DEADR+L++GF
Sbjct: 203 APKGPQIRDLERGVEICIATPGRLIDFLESGK----TNLRRCTYLVLDEADRMLDMGFEP 258
Query: 206 EIEEILD 212
+I +I+D
Sbjct: 259 QIRKIVD 265
Score = 120 (47.3 bits), Expect = 0.00029, P = 0.00029
Identities = 38/122 (31%), Positives = 62/122 (50%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILEL 201
+ GG + + L +G+ I +ATPG L+D L+ TNLR +++ DEADR+L++
Sbjct: 199 IYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGK----TNLRRCTYLVLDEADRMLDM 254
Query: 202 GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLE--TPVL 259
GF +I +I+D + RQ L+ SAT ++V L + L T +
Sbjct: 255 GFEPQIRKIVDQI---------------RPDRQTLMWSATWPKEVRQLAEDFLRDYTQIN 299
Query: 260 IG 261
+G
Sbjct: 300 VG 301
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 275 (101.9 bits), Expect = 4.4e-23, P = 4.4e-23
Identities = 68/187 (36%), Positives = 103/187 (55%)
Query: 29 KEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTV 88
K +FA F + D L ++ F PT +Q Q P+ LSGRD++ A TG+GKT+
Sbjct: 89 KPVFA---FHHANFPQYVMDVLMDQ-HFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTL 144
Query: 89 AYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGG 148
AYL P I H+ ++ P ++R G LVL PT EL V ++ R + + GG
Sbjct: 145 AYLLPAIVHI-NHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSR-LKSTCIYGG 202
Query: 149 GNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGK 205
+ + L +G+ I +ATPG L+D L+ TNLR +++ DEADR+L++GF
Sbjct: 203 APKGPQIRDLERGVEICIATPGRLIDFLESGK----TNLRRCTYLVLDEADRMLDMGFEP 258
Query: 206 EIEEILD 212
+I +I+D
Sbjct: 259 QIRKIVD 265
Score = 120 (47.3 bits), Expect = 0.00029, P = 0.00029
Identities = 38/122 (31%), Positives = 62/122 (50%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILEL 201
+ GG + + L +G+ I +ATPG L+D L+ TNLR +++ DEADR+L++
Sbjct: 199 IYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGK----TNLRRCTYLVLDEADRMLDM 254
Query: 202 GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLE--TPVL 259
GF +I +I+D + RQ L+ SAT ++V L + L T +
Sbjct: 255 GFEPQIRKIVDQI---------------RPDRQTLMWSATWPKEVRQLAEDFLRDYTQIN 299
Query: 260 IG 261
+G
Sbjct: 300 VG 301
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 275 (101.9 bits), Expect = 4.4e-23, P = 4.4e-23
Identities = 68/187 (36%), Positives = 103/187 (55%)
Query: 29 KEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTV 88
K +FA F + D L ++ F PT +Q Q P+ LSGRD++ A TG+GKT+
Sbjct: 89 KPVFA---FHHANFPQYVMDVLMDQ-HFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTL 144
Query: 89 AYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGG 148
AYL P I H+ ++ P ++R G LVL PT EL V ++ R + + GG
Sbjct: 145 AYLLPAIVHI-NHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSR-LKSTCIYGG 202
Query: 149 GNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGK 205
+ + L +G+ I +ATPG L+D L+ TNLR +++ DEADR+L++GF
Sbjct: 203 APKGPQIRDLERGVEICIATPGRLIDFLESGK----TNLRRCTYLVLDEADRMLDMGFEP 258
Query: 206 EIEEILD 212
+I +I+D
Sbjct: 259 QIRKIVD 265
Score = 120 (47.3 bits), Expect = 0.00029, P = 0.00029
Identities = 38/122 (31%), Positives = 62/122 (50%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILEL 201
+ GG + + L +G+ I +ATPG L+D L+ TNLR +++ DEADR+L++
Sbjct: 199 IYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGK----TNLRRCTYLVLDEADRMLDM 254
Query: 202 GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLE--TPVL 259
GF +I +I+D + RQ L+ SAT ++V L + L T +
Sbjct: 255 GFEPQIRKIVDQI---------------RPDRQTLMWSATWPKEVRQLAEDFLRDYTQIN 299
Query: 260 IG 261
+G
Sbjct: 300 VG 301
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 275 (101.9 bits), Expect = 4.5e-23, P = 4.5e-23
Identities = 68/187 (36%), Positives = 103/187 (55%)
Query: 29 KEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTV 88
K +FA F + D L ++ F PT +Q Q P+ LSGRD++ A TG+GKT+
Sbjct: 89 KPVFA---FHHANFPQYVMDVLMDQ-HFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTL 144
Query: 89 AYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGG 148
AYL P I H+ ++ P ++R G LVL PT EL V ++ R + + GG
Sbjct: 145 AYLLPAIVHI-NHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSR-LKSTCIYGG 202
Query: 149 GNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGK 205
+ + L +G+ I +ATPG L+D L+ TNLR +++ DEADR+L++GF
Sbjct: 203 APKGPQIRDLERGVEICIATPGRLIDFLESGK----TNLRRCTYLVLDEADRMLDMGFEP 258
Query: 206 EIEEILD 212
+I +I+D
Sbjct: 259 QIRKIVD 265
Score = 120 (47.3 bits), Expect = 0.00029, P = 0.00029
Identities = 38/122 (31%), Positives = 62/122 (50%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILEL 201
+ GG + + L +G+ I +ATPG L+D L+ TNLR +++ DEADR+L++
Sbjct: 199 IYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGK----TNLRRCTYLVLDEADRMLDM 254
Query: 202 GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLE--TPVL 259
GF +I +I+D + RQ L+ SAT ++V L + L T +
Sbjct: 255 GFEPQIRKIVDQI---------------RPDRQTLMWSATWPKEVRQLAEDFLRDYTQIN 299
Query: 260 IG 261
+G
Sbjct: 300 VG 301
>MGI|MGI:1919240 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005102 "receptor binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016070 "RNA metabolic process" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1919240 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
GeneTree:ENSGT00550000075100 CTD:79039 HOVERGEN:HBG051333
EMBL:AF319547 EMBL:BC043699 IPI:IPI00875042 RefSeq:NP_082317.1
UniGene:Mm.24495 ProteinModelPortal:Q8K4L0 SMR:Q8K4L0 STRING:Q8K4L0
PhosphoSite:Q8K4L0 PaxDb:Q8K4L0 PRIDE:Q8K4L0
Ensembl:ENSMUST00000031598 GeneID:71990 KEGG:mmu:71990
UCSC:uc008zhq.1 NextBio:335150 Bgee:Q8K4L0 CleanEx:MM_DDX54
Genevestigator:Q8K4L0 Uniprot:Q8K4L0
Length = 874
Score = 277 (102.6 bits), Expect = 4.9e-23, P = 4.9e-23
Identities = 59/175 (33%), Positives = 104/175 (59%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F S+GL + + ++ G++ PT +Q + IPVIL G+DV+ A TG+GKT +L P+
Sbjct: 97 FQSMGLSYPVFKGIMKK-GYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFE 155
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L++ S + +G AL+L PT EL L + ++L +F + ++GG + A
Sbjct: 156 RLKARSAQ----TGARALILSPTRELALQTMKFTKEL-GKFTGLKTALILGGDKMEDQFA 210
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 211
L + I++ATPG L+ H+ + ++ +++FDEADR+ E+GF ++++EI+
Sbjct: 211 ALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEII 264
Score = 152 (58.6 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 50/182 (27%), Positives = 86/182 (47%)
Query: 107 RSSGTFALVLVPTSELCLLVYEI-LQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISIL 165
RS+ T A L+ + L + + K L +F + ++GG + A L + I+
Sbjct: 160 RSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDII 219
Query: 166 VATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEG 225
+ATPG L+ H+ + ++ +++FDEADR+ E+GF ++++EI I + G
Sbjct: 220 IATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEI--------IGRLPGG 270
Query: 226 NEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKSNVHFGSLESDVKE 285
+ Q +L SATL + + + L PVLI LD ++ F + D K
Sbjct: 271 H-------QTVLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFLLVREDTKA 323
Query: 286 EV 287
V
Sbjct: 324 AV 325
>RGD|1562539 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10116 "Rattus norvegicus" [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006396
"RNA processing" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=ISO] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:1562539 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730 GO:GO:0003723
GO:GO:0006396 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000075100 IPI:IPI00193685
Ensembl:ENSRNOT00000001859 UCSC:RGD:1562539 OrthoDB:EOG469QTB
Uniprot:D3ZHY6
Length = 906
Score = 277 (102.6 bits), Expect = 5.2e-23, P = 5.2e-23
Identities = 59/175 (33%), Positives = 104/175 (59%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F S+GL + + ++ G++ PT +Q + IPVIL G+DV+ A TG+GKT +L P+
Sbjct: 97 FQSMGLSYPVFKGIMKK-GYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFE 155
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L++ S + +G AL+L PT EL L + ++L +F + ++GG + A
Sbjct: 156 RLKARSAQ----TGARALILSPTRELALQTMKFTKEL-GKFTGLKTALILGGDKMEDQFA 210
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 211
L + I++ATPG L+ H+ + ++ +++FDEADR+ E+GF ++++EI+
Sbjct: 211 ALHENPDIIIATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEII 264
Score = 153 (58.9 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 50/182 (27%), Positives = 86/182 (47%)
Query: 107 RSSGTFALVLVPTSELCLLVYEI-LQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISIL 165
RS+ T A L+ + L + + K L +F + ++GG + A L + I+
Sbjct: 160 RSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDII 219
Query: 166 VATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEG 225
+ATPG L+ H+ + ++ +++FDEADR+ E+GF ++++EI I + G
Sbjct: 220 IATPGRLV-HVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEI--------IGRLPGG 270
Query: 226 NEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKSNVHFGSLESDVKE 285
+ Q +L SATL + + + L PVLI LD ++ F + D K
Sbjct: 271 H-------QTVLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFFLVREDTKT 323
Query: 286 EV 287
V
Sbjct: 324 AV 325
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 270 (100.1 bits), Expect = 5.7e-23, P = 5.7e-23
Identities = 66/177 (37%), Positives = 97/177 (54%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
FS L L+ + + E G+E PT +QA AIP L GRDVL A TGTGKT ++ P+I
Sbjct: 4 FSELNLNPKVLKAIEEA-GYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMIT 62
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L R +LVL PT EL V E + + ++GG + ++ A
Sbjct: 63 LLARGRARARMPR---SLVLCPTRELAAQVAENFDTYTKHLK-LTKALLIGGVSFKEQDA 118
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDI 213
+ +G+ +L+ATPG LLDH + L T ++ ++ DEADR+L++GF +IE I +
Sbjct: 119 LIDRGVDVLIATPGRLLDHFER-GKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSL 174
Score = 144 (55.7 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 36/116 (31%), Positives = 61/116 (52%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 204
++GG + ++ A + +G+ +L+ATPG LLDH + L T ++ ++ DEADR+L++GF
Sbjct: 107 LIGGVSFKEQDALIDRGVDVLIATPGRLLDHFER-GKLLLTGVQIMVVDEADRMLDMGFI 165
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
+IE I + + RQ L SAT+ ++ +T L P I
Sbjct: 166 PDIERIFSL---------------TPFTRQTLFFSATMAPEIERITNTFLSAPARI 206
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 275 (101.9 bits), Expect = 5.7e-23, P = 5.7e-23
Identities = 68/187 (36%), Positives = 103/187 (55%)
Query: 29 KEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTV 88
K +FA F + D L ++ F PT +Q Q P+ LSGRD++ A TG+GKT+
Sbjct: 168 KPVFA---FHHANFPQYVMDVLMDQ-HFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTL 223
Query: 89 AYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGG 148
AYL P I H+ ++ P ++R G LVL PT EL V ++ R + + GG
Sbjct: 224 AYLLPAIVHI-NHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSR-LKSTCIYGG 281
Query: 149 GNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGK 205
+ + L +G+ I +ATPG L+D L+ TNLR +++ DEADR+L++GF
Sbjct: 282 APKGPQIRDLERGVEICIATPGRLIDFLESGK----TNLRRCTYLVLDEADRMLDMGFEP 337
Query: 206 EIEEILD 212
+I +I+D
Sbjct: 338 QIRKIVD 344
Score = 120 (47.3 bits), Expect = 0.00034, P = 0.00034
Identities = 38/122 (31%), Positives = 62/122 (50%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILEL 201
+ GG + + L +G+ I +ATPG L+D L+ TNLR +++ DEADR+L++
Sbjct: 278 IYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGK----TNLRRCTYLVLDEADRMLDM 333
Query: 202 GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLE--TPVL 259
GF +I +I+D + RQ L+ SAT ++V L + L T +
Sbjct: 334 GFEPQIRKIVDQI---------------RPDRQTLMWSATWPKEVRQLAEDFLRDYTQIN 378
Query: 260 IG 261
+G
Sbjct: 379 VG 380
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 275 (101.9 bits), Expect = 5.7e-23, P = 5.7e-23
Identities = 68/187 (36%), Positives = 103/187 (55%)
Query: 29 KEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTV 88
K +FA F + D L ++ F PT +Q Q P+ LSGRD++ A TG+GKT+
Sbjct: 168 KPVFA---FHHANFPQYVMDVLMDQ-HFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTL 223
Query: 89 AYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGG 148
AYL P I H+ ++ P ++R G LVL PT EL V ++ R + + GG
Sbjct: 224 AYLLPAIVHI-NHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSR-LKSTCIYGG 281
Query: 149 GNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGK 205
+ + L +G+ I +ATPG L+D L+ TNLR +++ DEADR+L++GF
Sbjct: 282 APKGPQIRDLERGVEICIATPGRLIDFLESGK----TNLRRCTYLVLDEADRMLDMGFEP 337
Query: 206 EIEEILD 212
+I +I+D
Sbjct: 338 QIRKIVD 344
Score = 120 (47.3 bits), Expect = 0.00034, P = 0.00034
Identities = 38/122 (31%), Positives = 62/122 (50%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILEL 201
+ GG + + L +G+ I +ATPG L+D L+ TNLR +++ DEADR+L++
Sbjct: 278 IYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGK----TNLRRCTYLVLDEADRMLDM 333
Query: 202 GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLE--TPVL 259
GF +I +I+D + RQ L+ SAT ++V L + L T +
Sbjct: 334 GFEPQIRKIVDQI---------------RPDRQTLMWSATWPKEVRQLAEDFLRDYTQIN 378
Query: 260 IG 261
+G
Sbjct: 379 VG 380
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 275 (101.9 bits), Expect = 5.8e-23, P = 5.8e-23
Identities = 68/187 (36%), Positives = 103/187 (55%)
Query: 29 KEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTV 88
K +FA F + D L ++ F PT +Q Q P+ LSGRD++ A TG+GKT+
Sbjct: 170 KPVFA---FHHANFPQYVMDVLMDQ-HFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTL 225
Query: 89 AYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGG 148
AYL P I H+ ++ P ++R G LVL PT EL V ++ R + + GG
Sbjct: 226 AYLLPAIVHI-NHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSR-LKSTCIYGG 283
Query: 149 GNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGK 205
+ + L +G+ I +ATPG L+D L+ TNLR +++ DEADR+L++GF
Sbjct: 284 APKGPQIRDLERGVEICIATPGRLIDFLESGK----TNLRRCTYLVLDEADRMLDMGFEP 339
Query: 206 EIEEILD 212
+I +I+D
Sbjct: 340 QIRKIVD 346
Score = 120 (47.3 bits), Expect = 0.00034, P = 0.00034
Identities = 38/122 (31%), Positives = 62/122 (50%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILEL 201
+ GG + + L +G+ I +ATPG L+D L+ TNLR +++ DEADR+L++
Sbjct: 280 IYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGK----TNLRRCTYLVLDEADRMLDM 335
Query: 202 GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLE--TPVL 259
GF +I +I+D + RQ L+ SAT ++V L + L T +
Sbjct: 336 GFEPQIRKIVDQI---------------RPDRQTLMWSATWPKEVRQLAEDFLRDYTQIN 380
Query: 260 IG 261
+G
Sbjct: 381 VG 382
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 275 (101.9 bits), Expect = 5.8e-23, P = 5.8e-23
Identities = 68/187 (36%), Positives = 103/187 (55%)
Query: 29 KEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTV 88
K +FA F + D L ++ F PT +Q Q P+ LSGRD++ A TG+GKT+
Sbjct: 170 KPVFA---FHHANFPQYVMDVLMDQ-HFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTL 225
Query: 89 AYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGG 148
AYL P I H+ ++ P ++R G LVL PT EL V ++ R + + GG
Sbjct: 226 AYLLPAIVHI-NHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSR-LKSTCIYGG 283
Query: 149 GNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGK 205
+ + L +G+ I +ATPG L+D L+ TNLR +++ DEADR+L++GF
Sbjct: 284 APKGPQIRDLERGVEICIATPGRLIDFLESGK----TNLRRCTYLVLDEADRMLDMGFEP 339
Query: 206 EIEEILD 212
+I +I+D
Sbjct: 340 QIRKIVD 346
Score = 120 (47.3 bits), Expect = 0.00034, P = 0.00034
Identities = 38/122 (31%), Positives = 62/122 (50%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILEL 201
+ GG + + L +G+ I +ATPG L+D L+ TNLR +++ DEADR+L++
Sbjct: 280 IYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGK----TNLRRCTYLVLDEADRMLDM 335
Query: 202 GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLE--TPVL 259
GF +I +I+D + RQ L+ SAT ++V L + L T +
Sbjct: 336 GFEPQIRKIVDQI---------------RPDRQTLMWSATWPKEVRQLAEDFLRDYTQIN 380
Query: 260 IG 261
+G
Sbjct: 381 VG 382
>TAIR|locus:2828586 [details] [associations]
symbol:AT3G02065 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003723 EMBL:AC011664 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000006599 OMA:VTRPIID EMBL:AY065172
EMBL:BT001184 IPI:IPI00516794 IPI:IPI00525607 RefSeq:NP_001030621.1
RefSeq:NP_850499.1 RefSeq:NP_974208.1 UniGene:At.41185
UniGene:At.47211 ProteinModelPortal:Q3EBD3 SMR:Q3EBD3 IntAct:Q3EBD3
PaxDb:Q3EBD3 PRIDE:Q3EBD3 EnsemblPlants:AT3G02065.2
EnsemblPlants:AT3G02065.3 GeneID:821155 KEGG:ath:AT3G02065
GeneFarm:1017 TAIR:At3g02065 InParanoid:Q3EBD3 PhylomeDB:Q3EBD3
ProtClustDB:PLN00206 Genevestigator:Q3EBD3 Uniprot:Q3EBD3
Length = 505
Score = 271 (100.5 bits), Expect = 5.8e-23, P = 5.8e-23
Identities = 65/186 (34%), Positives = 102/186 (54%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+S GL L L E G++ PT +Q QAIP L+G+ +L +A TG+GKT ++L PII+
Sbjct: 112 FTSCGLPPKLLLNL-ETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIIS 170
Query: 97 HLQSYSPR--IDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKE 154
+Y D+ A+VL PT ELC+ V E K+L + V+GG S +
Sbjct: 171 RCTTYHSEHPSDQRRNPLAMVLAPTRELCVQV-EDQAKMLGKGLPFKTALVVGGDPMSGQ 229
Query: 155 KARLRKGISILVATPGHLLDHL-KHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDI 213
R+++G+ +++ TPG ++D L KHT N+ + DE D +L+ GF ++ +I
Sbjct: 230 LYRIQQGVELIIGTPGRVVDLLSKHTIEL--DNIMTFVLDEVDCMLQRGFRDQVMQIFQA 287
Query: 214 LGSRNI 219
L +
Sbjct: 288 LSQPQV 293
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 277 (102.6 bits), Expect = 5.8e-23, P = 5.8e-23
Identities = 76/230 (33%), Positives = 123/230 (53%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
++ G++ + + L+ + + PT +QAQAIP I+SGRDV+ A TG+GKT+A+L P+
Sbjct: 306 WAQCGVNLKMMNVLK-KFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFR 364
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
H+ P ++ G A++L PT EL + Y+ K V GG S++ A
Sbjct: 365 HILD-QPELEEGDGPIAVILAPTRELAMQTYKEANKFAKPLGLKV-ACTYGGVGISEQIA 422
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILDI 213
L++G I+V TPG ++D L S + TNLR +++ DEADR+ + GF +I ++++
Sbjct: 423 DLKRGAEIVVCTPGRMIDVLAANSGKV-TNLRRVTYLVLDEADRMFDKGFEPQIMKVVN- 480
Query: 214 LGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPV--LIG 261
NI +Q +L SAT + L + L+ PV L+G
Sbjct: 481 ----NIRP----------DKQTVLFSATFPRHMEALARKVLDKPVEILVG 516
>UNIPROTKB|Q9NY93 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 GO:GO:0003723 EMBL:CH236960 EMBL:CH471128
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
CleanEx:HS_DDX21 CTD:54606 HOVERGEN:HBG051334 OrthoDB:EOG47H5PT
EMBL:AJ131712 EMBL:AF247666 EMBL:AL136700 EMBL:AK022774
EMBL:AK315363 EMBL:CR457213 EMBL:AC004938 EMBL:BC001235
IPI:IPI00302281 IPI:IPI00925037 RefSeq:NP_001244118.1
RefSeq:NP_061955.1 UniGene:Hs.654762 ProteinModelPortal:Q9NY93
SMR:Q9NY93 IntAct:Q9NY93 STRING:Q9NY93 PhosphoSite:Q9NY93
DMDM:20139238 SWISS-2DPAGE:Q9NY93 PaxDb:Q9NY93 PRIDE:Q9NY93
DNASU:54606 Ensembl:ENST00000258772 Ensembl:ENST00000431640
GeneID:54606 KEGG:hsa:54606 UCSC:uc003tlg.3 GeneCards:GC07M044571
HGNC:HGNC:18193 HPA:HPA019749 MIM:608023 neXtProt:NX_Q9NY93
PharmGKB:PA134916346 InParanoid:Q9NY93 PhylomeDB:Q9NY93
GenomeRNAi:54606 NextBio:57133 ArrayExpress:Q9NY93 Bgee:Q9NY93
CleanEx:HS_DDX56 Genevestigator:Q9NY93 GermOnline:ENSG00000136271
Uniprot:Q9NY93
Length = 547
Score = 272 (100.8 bits), Expect = 5.9e-23, P = 5.9e-23
Identities = 75/236 (31%), Positives = 121/236 (51%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F +GLD L + + LG+ PT +Q +AIP+ L G+D+L A TG+GKT AY P++
Sbjct: 9 FEHMGLDPRLLQAVTD-LGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQ 67
Query: 97 ---HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL-HRFRWIVPGYVMGGGNRS 152
H ++ P ++++ LVLVPT EL ++Q+L + R + V +
Sbjct: 68 LLLHRKATGPVVEQA--VRGLVLVPTKELARQAQSMIQQLATYCARDVRVANVSAAEDSV 125
Query: 153 KEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 212
++A L + ++V TP +L HL+ S L +L ++ DEAD + GF +E++ +L
Sbjct: 126 SQRAVLMEKPDVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLC 185
Query: 213 ILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFP 268
++ I Q L+SAT NE V L ++ L PV + L E + P
Sbjct: 186 -----HLPRI----------YQAFLMSATFNEDVQALKELILHNPVTLKLQESQLP 226
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 273 (101.2 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 70/235 (29%), Positives = 121/235 (51%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+S LD L + ++ F PT VQ ++P++ +GRD++ A TG+GKT +L P+++
Sbjct: 144 FTSPPLDGLLLENIK-LARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLS 202
Query: 97 HLQSYSPRID-RSSGTF--------ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMG 147
P S G+F A+++ PT EL +++ +K +R W+ V G
Sbjct: 203 ESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYR-SWVKACVVYG 261
Query: 148 GGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEI 207
G + + +G +LVATPG L D L+ L N+++++ DEADR+L++GF +I
Sbjct: 262 GSPIGNQLREIERGCDLLVATPGRLNDLLERGKISL-ANVKYLVLDEADRMLDMGFEPQI 320
Query: 208 EEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGL 262
I++ ++ +GE RQ L+ SAT + HL + L + + +
Sbjct: 321 RHIVE---DCDMTPVGE--------RQTLMFSATFPADIQHLARDFLSDYIFLSV 364
>UNIPROTKB|F1MBQ8 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
of intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
Length = 614
Score = 273 (101.2 bits), Expect = 6.3e-23, P = 6.3e-23
Identities = 63/163 (38%), Positives = 95/163 (58%)
Query: 53 RLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 112
R F PT +QAQ PV LSG D++ A TG+GKT++YL P I H+ ++ P ++R G
Sbjct: 111 RQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHI-NHQPFLERGDGPI 169
Query: 113 ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHL 172
LVL PT EL V ++ + R + + GG + + L +G+ I +ATPG L
Sbjct: 170 CLVLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRL 228
Query: 173 LDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILD 212
+D L+ TNLR +++ DEADR+L++GF +I +I+D
Sbjct: 229 IDFLECGK----TNLRRTTYLVLDEADRMLDMGFEPQIRKIVD 267
Score = 120 (47.3 bits), Expect = 0.00027, P = 0.00027
Identities = 39/145 (26%), Positives = 72/145 (49%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILEL 201
+ GG + + L +G+ I +ATPG L+D L+ TNLR +++ DEADR+L++
Sbjct: 201 IYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK----TNLRRTTYLVLDEADRMLDM 256
Query: 202 GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIG 261
GF +I +I+D + RQ L+ SAT ++V L + L+ + I
Sbjct: 257 GFEPQIRKIVDQI---------------RPDRQTLMWSATWPKEVRQLAEDFLKDYIHIN 301
Query: 262 LDEKKFPEDKSNVHFGSLESDVKEE 286
+ + + + + + DV+++
Sbjct: 302 IGALELSANHNILQIVDVCHDVEKD 326
>UNIPROTKB|J3KTA4 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
Ensembl:ENST00000578804 Uniprot:J3KTA4
Length = 614
Score = 273 (101.2 bits), Expect = 6.3e-23, P = 6.3e-23
Identities = 63/163 (38%), Positives = 95/163 (58%)
Query: 53 RLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 112
R F PT +QAQ PV LSG D++ A TG+GKT++YL P I H+ ++ P ++R G
Sbjct: 111 RQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHI-NHQPFLERGDGPI 169
Query: 113 ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHL 172
LVL PT EL V ++ + R + + GG + + L +G+ I +ATPG L
Sbjct: 170 CLVLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRL 228
Query: 173 LDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILD 212
+D L+ TNLR +++ DEADR+L++GF +I +I+D
Sbjct: 229 IDFLECGK----TNLRRTTYLVLDEADRMLDMGFEPQIRKIVD 267
Score = 120 (47.3 bits), Expect = 0.00027, P = 0.00027
Identities = 39/145 (26%), Positives = 72/145 (49%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILEL 201
+ GG + + L +G+ I +ATPG L+D L+ TNLR +++ DEADR+L++
Sbjct: 201 IYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK----TNLRRTTYLVLDEADRMLDM 256
Query: 202 GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIG 261
GF +I +I+D + RQ L+ SAT ++V L + L+ + I
Sbjct: 257 GFEPQIRKIVDQI---------------RPDRQTLMWSATWPKEVRQLAEDFLKDYIHIN 301
Query: 262 LDEKKFPEDKSNVHFGSLESDVKEE 286
+ + + + + + DV+++
Sbjct: 302 IGALELSANHNILQIVDVCHDVEKD 326
>UNIPROTKB|P17844 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0045069 "regulation of viral genome replication"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
[GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IMP] [GO:0072332
"intrinsic apoptotic signaling pathway by p53 class mediator"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
"regulation of skeletal muscle cell differentiation" evidence=ISS]
[GO:0045667 "regulation of osteoblast differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0050681
"androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
"positive regulation of intracellular estrogen receptor signaling
pathway" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
"pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
Length = 614
Score = 273 (101.2 bits), Expect = 6.3e-23, P = 6.3e-23
Identities = 63/163 (38%), Positives = 95/163 (58%)
Query: 53 RLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 112
R F PT +QAQ PV LSG D++ A TG+GKT++YL P I H+ ++ P ++R G
Sbjct: 111 RQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHI-NHQPFLERGDGPI 169
Query: 113 ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHL 172
LVL PT EL V ++ + R + + GG + + L +G+ I +ATPG L
Sbjct: 170 CLVLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRL 228
Query: 173 LDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILD 212
+D L+ TNLR +++ DEADR+L++GF +I +I+D
Sbjct: 229 IDFLECGK----TNLRRTTYLVLDEADRMLDMGFEPQIRKIVD 267
Score = 120 (47.3 bits), Expect = 0.00027, P = 0.00027
Identities = 39/145 (26%), Positives = 72/145 (49%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILEL 201
+ GG + + L +G+ I +ATPG L+D L+ TNLR +++ DEADR+L++
Sbjct: 201 IYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK----TNLRRTTYLVLDEADRMLDM 256
Query: 202 GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIG 261
GF +I +I+D + RQ L+ SAT ++V L + L+ + I
Sbjct: 257 GFEPQIRKIVDQI---------------RPDRQTLMWSATWPKEVRQLAEDFLKDYIHIN 301
Query: 262 LDEKKFPEDKSNVHFGSLESDVKEE 286
+ + + + + + DV+++
Sbjct: 302 IGALELSANHNILQIVDVCHDVEKD 326
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 273 (101.2 bits), Expect = 6.3e-23, P = 6.3e-23
Identities = 63/163 (38%), Positives = 95/163 (58%)
Query: 53 RLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 112
R F PT +QAQ PV LSG D++ A TG+GKT++YL P I H+ ++ P ++R G
Sbjct: 111 RQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHI-NHQPFLERGDGPI 169
Query: 113 ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHL 172
LVL PT EL V ++ + R + + GG + + L +G+ I +ATPG L
Sbjct: 170 CLVLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRL 228
Query: 173 LDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILD 212
+D L+ TNLR +++ DEADR+L++GF +I +I+D
Sbjct: 229 IDFLECGK----TNLRRTTYLVLDEADRMLDMGFEPQIRKIVD 267
Score = 120 (47.3 bits), Expect = 0.00027, P = 0.00027
Identities = 39/145 (26%), Positives = 72/145 (49%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILEL 201
+ GG + + L +G+ I +ATPG L+D L+ TNLR +++ DEADR+L++
Sbjct: 201 IYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK----TNLRRTTYLVLDEADRMLDM 256
Query: 202 GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIG 261
GF +I +I+D + RQ L+ SAT ++V L + L+ + I
Sbjct: 257 GFEPQIRKIVDQI---------------RPDRQTLMWSATWPKEVRQLAEDFLKDYIHIN 301
Query: 262 LDEKKFPEDKSNVHFGSLESDVKEE 286
+ + + + + + DV+++
Sbjct: 302 IGALELSANHNILQIVDVCHDVEKD 326
>UNIPROTKB|Q5R4I9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
Uniprot:Q5R4I9
Length = 614
Score = 273 (101.2 bits), Expect = 6.3e-23, P = 6.3e-23
Identities = 63/163 (38%), Positives = 95/163 (58%)
Query: 53 RLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 112
R F PT +QAQ PV LSG D++ A TG+GKT++YL P I H+ ++ P ++R G
Sbjct: 111 RQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHI-NHQPFLERGDGPI 169
Query: 113 ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHL 172
LVL PT EL V ++ + R + + GG + + L +G+ I +ATPG L
Sbjct: 170 CLVLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRL 228
Query: 173 LDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILD 212
+D L+ TNLR +++ DEADR+L++GF +I +I+D
Sbjct: 229 IDFLECGK----TNLRRTTYLVLDEADRMLDMGFEPQIRKIVD 267
Score = 120 (47.3 bits), Expect = 0.00027, P = 0.00027
Identities = 39/145 (26%), Positives = 72/145 (49%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILEL 201
+ GG + + L +G+ I +ATPG L+D L+ TNLR +++ DEADR+L++
Sbjct: 201 IYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK----TNLRRTTYLVLDEADRMLDM 256
Query: 202 GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIG 261
GF +I +I+D + RQ L+ SAT ++V L + L+ + I
Sbjct: 257 GFEPQIRKIVDQI---------------RPDRQTLMWSATWPKEVRQLAEDFLKDYIHIN 301
Query: 262 LDEKKFPEDKSNVHFGSLESDVKEE 286
+ + + + + + DV+++
Sbjct: 302 IGALELSANHNILQIVDVCHDVEKD 326
>MGI|MGI:105037 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
differentiation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0060765 "regulation of androgen receptor signaling pathway"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
Length = 614
Score = 273 (101.2 bits), Expect = 6.3e-23, P = 6.3e-23
Identities = 63/163 (38%), Positives = 95/163 (58%)
Query: 53 RLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 112
R F PT +QAQ PV LSG D++ A TG+GKT++YL P I H+ ++ P ++R G
Sbjct: 111 RQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHI-NHQPFLERGDGPI 169
Query: 113 ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHL 172
LVL PT EL V ++ + R + + GG + + L +G+ I +ATPG L
Sbjct: 170 CLVLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRL 228
Query: 173 LDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILD 212
+D L+ TNLR +++ DEADR+L++GF +I +I+D
Sbjct: 229 IDFLECGK----TNLRRTTYLVLDEADRMLDMGFEPQIRKIVD 267
Score = 120 (47.3 bits), Expect = 0.00027, P = 0.00027
Identities = 39/145 (26%), Positives = 72/145 (49%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILEL 201
+ GG + + L +G+ I +ATPG L+D L+ TNLR +++ DEADR+L++
Sbjct: 201 IYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK----TNLRRTTYLVLDEADRMLDM 256
Query: 202 GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIG 261
GF +I +I+D + RQ L+ SAT ++V L + L+ + I
Sbjct: 257 GFEPQIRKIVDQI---------------RPDRQTLMWSATWPKEVRQLAEDFLKDYIHIN 301
Query: 262 LDEKKFPEDKSNVHFGSLESDVKEE 286
+ + + + + + DV+++
Sbjct: 302 IGALELSANHNILQIVDVCHDVEKD 326
>RGD|619906 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IDA] [GO:0030331 "estrogen receptor binding"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
"pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=IDA] [GO:0050681 "androgen receptor binding"
evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
signaling pathway by p53 class mediator" evidence=IEA;ISO]
[GO:2001014 "regulation of skeletal muscle cell differentiation"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
Genevestigator:Q6AYI1 Uniprot:Q6AYI1
Length = 615
Score = 273 (101.2 bits), Expect = 6.4e-23, P = 6.4e-23
Identities = 63/163 (38%), Positives = 95/163 (58%)
Query: 53 RLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 112
R F PT +QAQ PV LSG D++ A TG+GKT++YL P I H+ ++ P ++R G
Sbjct: 111 RQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHI-NHQPFLERGDGPI 169
Query: 113 ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHL 172
LVL PT EL V ++ + R + + GG + + L +G+ I +ATPG L
Sbjct: 170 CLVLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRL 228
Query: 173 LDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILD 212
+D L+ TNLR +++ DEADR+L++GF +I +I+D
Sbjct: 229 IDFLECGK----TNLRRTTYLVLDEADRMLDMGFEPQIRKIVD 267
Score = 120 (47.3 bits), Expect = 0.00027, P = 0.00027
Identities = 39/145 (26%), Positives = 72/145 (49%)
Query: 145 VMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLR---WIIFDEADRILEL 201
+ GG + + L +G+ I +ATPG L+D L+ TNLR +++ DEADR+L++
Sbjct: 201 IYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK----TNLRRTTYLVLDEADRMLDM 256
Query: 202 GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIG 261
GF +I +I+D + RQ L+ SAT ++V L + L+ + I
Sbjct: 257 GFEPQIRKIVDQI---------------RPDRQTLMWSATWPKEVRQLAEDFLKDYIHIN 301
Query: 262 LDEKKFPEDKSNVHFGSLESDVKEE 286
+ + + + + + DV+++
Sbjct: 302 IGALELSANHNILQIVDVCHDVEKD 326
WARNING: HSPs involving 592 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.385 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 316 303 0.00097 115 3 11 22 0.40 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 842
No. of states in DFA: 602 (64 KB)
Total size of DFA: 187 KB (2107 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.43u 0.12s 26.55t Elapsed: 00:00:01
Total cpu time: 26.48u 0.12s 26.60t Elapsed: 00:00:01
Start: Mon May 20 14:59:12 2013 End: Mon May 20 14:59:13 2013
WARNINGS ISSUED: 2