BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043110
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/235 (38%), Positives = 144/235 (61%), Gaps = 31/235 (13%)
Query: 32 FASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYL 91
FAS C +L ++TL + + +GF T++Q ++I +L GRD+L A TG+GKT+A+L
Sbjct: 54 FASLC--NLVNENTL--KAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFL 109
Query: 92 APIINHLQS--YSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL--HRFRWIVPGYVMG 147
P + + + PR +GT L+L PT EL + + +L++L+ H + G +MG
Sbjct: 110 IPAVELIVKLRFMPR----NGTGVLILSPTRELAMQTFGVLKELMTHHVHTY---GLIMG 162
Query: 148 GGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEI 207
G NRS E +L GI+I+VATPG LLDH+++T F++ NL+ ++ DEADRIL++GF +E+
Sbjct: 163 GSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEEL 222
Query: 208 EEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLET-PVLIG 261
++I+ +L +R RQ +L SAT KV L +ISL+ P+ +G
Sbjct: 223 KQIIKLLPTR---------------RQTMLFSATQTRKVEDLARISLKKEPLYVG 262
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 134 bits (336), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 123/222 (55%), Gaps = 23/222 (10%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F LG+ LC+ ++LG+ PTK+Q +AIP+ L GRD++ A TG+GKT A+ PI+N
Sbjct: 45 FKDLGVTDVLCEAC-DQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 103
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L R+ FALVL PT EL + E + L + ++GG + +
Sbjct: 104 ALLETPQRL------FALVLTPTRELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSL 156
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216
L K I++ATPG L+DHL++T F L++++ DEADRIL + F E+++IL ++
Sbjct: 157 ALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVI-P 215
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPV 258
R+ R+ L SAT+ +KV L + +L+ PV
Sbjct: 216 RD--------------RKTFLFSATMTKKVQKLQRAALKNPV 243
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 122/231 (52%), Gaps = 24/231 (10%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
FS L L+E + T++Q Q I + L G+DVL A TG+GKT+A+L P++
Sbjct: 27 FSDFPLSKKTLKGLQEA-QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 85
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL--LHRFRWIVPGYVMGGGNRSKE 154
L Y + + G L++ PT EL +E+L+K+ H F G ++GG + E
Sbjct: 86 AL--YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFS---AGLIIGGKDLKHE 140
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214
R+ I+ILV TPG LL H+ T SF T+L+ ++ DEADRIL++GF + +++ L
Sbjct: 141 AERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENL 199
Query: 215 GSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265
KRQ LL SAT + V L ++SL+ P + + EK
Sbjct: 200 PK---------------KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEK 235
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 113/218 (51%), Gaps = 21/218 (9%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F L LD T+ + + ++ PT +Q AIP IL RD++ A TG+GKT A+L PIIN
Sbjct: 25 FDELKLDPTIRNNIL-LASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIIN 83
Query: 97 HLQSYSPRIDRSSGTF---ALVLVPTSELCLLVYEILQK--LLHRFRWIVPGYVMGGGNR 151
HL R S T L+L PT EL + + QK L R V V GG +
Sbjct: 84 HLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCV---VYGGADT 140
Query: 152 SKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 211
+ ++ G +LVATPG L+D ++ L ++I+ DEADR+L++GF +I +I+
Sbjct: 141 HSQIREVQMGCHLLVATPGRLVDFIEKNKISLEF-CKYIVLDEADRMLDMGFEPQIRKII 199
Query: 212 DILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHL 249
+ E N S + RQ L+ SAT +++ L
Sbjct: 200 E-----------ESNMPSGINRQTLMFSATFPKEIQKL 226
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 118/231 (51%), Gaps = 38/231 (16%)
Query: 53 RLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 112
R F PT +QAQ PV LSG D++ A TG+GKT++YL P I H+ ++ P ++R G
Sbjct: 46 RQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHI-NHQPFLERGDGPI 104
Query: 113 ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHL 172
LVL PT EL V ++ + R + + GG + + L +G+ I +ATPG L
Sbjct: 105 CLVLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRL 163
Query: 173 LDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVS 229
+D L+ TNLR +++ DEADR+L++GF +I +I+D +
Sbjct: 164 IDFLECGK----TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI--------------- 204
Query: 230 NVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKSNVHFGSLE 280
RQ L+ SAT ++V L + F +D +++ G+LE
Sbjct: 205 RPDRQTLMWSATWPKEVRQLA--------------EDFLKDYIHINIGALE 241
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 114 bits (285), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 113/213 (53%), Gaps = 24/213 (11%)
Query: 53 RLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 112
R F PT +QAQ PV LSG D++ A TG+GKT++YL P I H+ ++ P ++R G
Sbjct: 60 RQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHI-NHQPFLERGDGPI 118
Query: 113 ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHL 172
LVL PT EL V ++ + R + + GG + + L +G+ I +ATPG L
Sbjct: 119 CLVLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRL 177
Query: 173 LDHLKHTSSFLHTNLR---WIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVS 229
+D L+ TNLR +++ DEADR+L++GF +I +I+D +
Sbjct: 178 IDFLECGK----TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI--------------- 218
Query: 230 NVKRQNLLLSATLNEKVNHLTKISLETPVLIGL 262
RQ L+ SAT ++V L + L+ + I +
Sbjct: 219 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINI 251
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 109/224 (48%), Gaps = 23/224 (10%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F L + + L R G PT +QA A+P+ L G+D++ A TGTGKT+A+ PI
Sbjct: 3 FKDFPLKPEILEALHGR-GLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAE 61
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L +P +R ALVL PT EL L V L + + + V GG K+K
Sbjct: 62 RL---APSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVA---VYGGTGYGKQKE 115
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216
L +G +VATPG LD+L+ L + + + DEAD +L +GF +E+E +L
Sbjct: 116 ALLRGADAVVATPGRALDYLRQGVLDL-SRVEVAVLDEADEMLSMGFEEEVEALLS---- 170
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
+ RQ LL SATL L + ++ PVLI
Sbjct: 171 -----------ATPPSRQTLLFSATLPSWAKRLAERYMKNPVLI 203
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 109/224 (48%), Gaps = 23/224 (10%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F L + + L R G PT ++A A+P+ L G+D++ A TGTGKT+A+ PI
Sbjct: 3 FKDFPLKPEILEALHGR-GLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPIAE 61
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L +P +R ALVL PT EL L V L + + + V GG K+K
Sbjct: 62 RL---APSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVA---VYGGTGYGKQKE 115
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216
L +G +VATPG LD+L+ L + + + DEAD +L +GF +E+E +L
Sbjct: 116 ALLRGADAVVATPGRALDYLRQGVLDL-SRVEVAVLDEADEMLSMGFEEEVEALLS---- 170
Query: 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
+ RQ LL SATL L + ++ PVLI
Sbjct: 171 -----------ATPPSRQTLLFSATLPSWAKRLAERYMKNPVLI 203
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 114/208 (54%), Gaps = 18/208 (8%)
Query: 53 RLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 112
R+G PT +Q+QA P+IL G D++V A TGTGKT++YL P HL S ++ +G
Sbjct: 37 RVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPG 96
Query: 113 ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHL 172
LVL PT EL L V K + ++ + + GG NR+ + + KG+ I++ATPG L
Sbjct: 97 MLVLTPTRELALHVEAECSK--YSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRL 154
Query: 173 LDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVK 232
D L+ +S ++ +++ DEAD++L++ F +I +IL L R
Sbjct: 155 ND-LQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKIL--LDVRP-------------D 198
Query: 233 RQNLLLSATLNEKVNHLTKISLETPVLI 260
RQ ++ SAT + V L L+ P+++
Sbjct: 199 RQTVMTSATWPDTVRQLALSYLKDPMIV 226
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 116/221 (52%), Gaps = 29/221 (13%)
Query: 56 FEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSP----RIDRSSGT 111
+ PT VQ AIP+I RD++ A TG+GKT A+L PI++ + S P R + +G
Sbjct: 35 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGR 94
Query: 112 F--------ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGIS 163
+ +LVL PT EL + +YE +K +R R + P V GG + ++ L +G
Sbjct: 95 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSR-VRPCVVYGGADIGQQIRDLERGCH 153
Query: 164 ILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL--DILGSRNIAS 221
+LVATPG L+D ++ L ++++ DEADR+L++GF +I I+ D + + +
Sbjct: 154 LLVATPGRLVDMMERGKIGLDF-CKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGV-- 210
Query: 222 IGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGL 262
R ++ SAT +++ L + L+ + + +
Sbjct: 211 -----------RHTMMFSATFPKEIQMLARDFLDEYIFLAV 240
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 118/228 (51%), Gaps = 21/228 (9%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F+S L + D + + G++ PT +Q +IPVI SGRD++ A TG+GKT A+L PI++
Sbjct: 58 FTSADLRDIIIDNV-NKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILS 116
Query: 97 HL--QSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKE 154
L + + R +++ PT EL + ++ +K ++ G V GG + +
Sbjct: 117 KLLEDPHELELGRPQ---VVIVSPTRELAIQIFNEARKFAFE-SYLKIGIVYGGTSFRHQ 172
Query: 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214
+ +G +++ATPG LLD + T + R+++ DEADR+L++GF +++ I+ +
Sbjct: 173 NECITRGCHVVIATPGRLLDFVDRT-FITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHV 231
Query: 215 GSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGL 262
R + Q L+ SAT E++ + L+ V + +
Sbjct: 232 TMRP-------------EHQTLMFSATFPEEIQRMAGEFLKNYVFVAI 266
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 116/226 (51%), Gaps = 20/226 (8%)
Query: 53 RLGFEAPTKVQAQAIPVILSGRD--VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSG 110
R+ F T VQ + I ILS D V+ A TGTGKT A+L PI HL + + D
Sbjct: 38 RMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHL--INTKFDSQYM 95
Query: 111 TFALVLVPTSELCLLVYEILQKLLHRFRWIVPGY----VMGGGNRSKEKARLRK-GISIL 165
A+++ PT +L L + E K +H + + Y ++GG + ++ K +I+
Sbjct: 96 VKAVIVAPTRDLALQI-EAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIV 154
Query: 166 VATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEG 225
+ATPG L+D L+ S+ + + + DEADR+LE+GF ++E I IL +N S
Sbjct: 155 IATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKS---- 210
Query: 226 NEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLD--EKKFPE 269
N+K LL SATL++KV L + + LD +K PE
Sbjct: 211 --ADNIK--TLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPE 252
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 116/226 (51%), Gaps = 20/226 (8%)
Query: 53 RLGFEAPTKVQAQAIPVILSGRD--VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSG 110
R+ F T VQ + I ILS D V+ A TGTGKT A+L PI HL + + D
Sbjct: 89 RMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHL--INTKFDSQYM 146
Query: 111 TFALVLVPTSELCLLVYEILQKLLHRFRWIVPGY----VMGGGNRSKEKARLRK-GISIL 165
A+++ PT +L L + E K +H + + Y ++GG + ++ K +I+
Sbjct: 147 VKAVIVAPTRDLALQI-EAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIV 205
Query: 166 VATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEG 225
+ATPG L+D L+ S+ + + + DEADR+LE+GF ++E I IL +N S
Sbjct: 206 IATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKS---- 261
Query: 226 NEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLD--EKKFPE 269
N+K LL SATL++KV L + + LD +K PE
Sbjct: 262 --ADNIK--TLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPE 303
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 108/205 (52%), Gaps = 18/205 (8%)
Query: 53 RLGFEAPTKVQAQAIPVILSGRD--VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSG 110
R+ F T VQ + I ILS D V+ A TGTGKT A+L PI HL + + D
Sbjct: 38 RMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHL--INTKFDSQYM 95
Query: 111 TFALVLVPTSELCLLVYEILQKLLHRFRWIVPGY----VMGGGNRSKEKARLRK-GISIL 165
A+++ PT +L L + E K +H + + Y ++GG + ++ K +I+
Sbjct: 96 VKAVIVAPTRDLALQI-EAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIV 154
Query: 166 VATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEG 225
+ATPG L+D L+ S+ + + + DEADR+LE+GF ++E I IL +N S
Sbjct: 155 IATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKS---- 210
Query: 226 NEVSNVKRQNLLLSATLNEKVNHLT 250
N+K LL SATL++KV L
Sbjct: 211 --ADNIK--TLLFSATLDDKVQKLA 231
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 104/211 (49%), Gaps = 23/211 (10%)
Query: 55 GFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 114
GFE P+ +Q +AIPV ++GRD+L A GTGKT A++ P L+ P++++ AL
Sbjct: 40 GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPT---LEKVKPKLNKIQ---AL 93
Query: 115 VLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLD 174
++VPT EL L +++ + L + I GG N + RL + + ILV TPG +LD
Sbjct: 94 IMVPTRELALQTSQVV-RTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLD 152
Query: 175 HLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQ 234
+ L ++ I DEAD++L F IE+IL L + Q
Sbjct: 153 LASRKVADL-SDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTH---------------Q 196
Query: 235 NLLLSATLNEKVNHLTKISLETPVLIGLDEK 265
+LL SAT V L P I L E+
Sbjct: 197 SLLFSATFPLTVKEFMVKHLHKPYEINLMEE 227
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 101/204 (49%), Gaps = 22/204 (10%)
Query: 54 LGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 113
+G+E P+ +Q ++IP+ LSGRD+L A GTGK+ AYL P++ L I A
Sbjct: 21 MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQ------A 74
Query: 114 LVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLL 173
+V+VPT EL L V +I ++ GG N + RL + +++ATPG +L
Sbjct: 75 MVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRIL 134
Query: 174 DHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKR 233
D +K + + +++ I+ DEAD++L F + +E+I+ L R
Sbjct: 135 DLIKKGVAKVD-HVQMIVLDEADKLLSQDFVQIMEDIILTLPK---------------NR 178
Query: 234 QNLLLSATLNEKVNHLTKISLETP 257
Q LL SAT V LE P
Sbjct: 179 QILLYSATFPLSVQKFMNSHLEKP 202
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 97/177 (54%), Gaps = 12/177 (6%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGR-DVLVNAATGTGKTVAYLAPII 95
F+ L L + + +R + GFE PT +Q + IP+ L+ +++ A TG+GKT ++ P+I
Sbjct: 8 FNELNLSDNILNAIRNK-GFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66
Query: 96 NHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEK 155
++ ++G A++L PT EL + V + ++ L + + GG +
Sbjct: 67 -------ELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAK--IYGGKAIYPQ 117
Query: 156 ARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 212
+ K +I+V TPG +LDH+ + L N+++ I DEAD L GF K++E+IL+
Sbjct: 118 IKALKNANIVVGTPGRILDHINRGTLNLK-NVKYFILDEADEXLNXGFIKDVEKILN 173
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 98/207 (47%), Gaps = 26/207 (12%)
Query: 55 GFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRS-SGTFA 113
GFE P+ +Q +AI I+ G DVL A +GTGKT + I LQ RID S A
Sbjct: 41 GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS---IAALQ----RIDTSVKAPQA 93
Query: 114 LVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLL 173
L+L PT EL L + +++ L F + + GG E A + I+V TPG +
Sbjct: 94 LMLAPTRELALQIQKVVMALA--FHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVF 151
Query: 174 DHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKR 233
D+++ F ++ I DEAD +L GF ++I +I +L
Sbjct: 152 DNIQR-RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT--------------- 195
Query: 234 QNLLLSATLNEKVNHLTKISLETPVLI 260
Q +LLSAT+ V +T + PV I
Sbjct: 196 QVVLLSATMPNDVLEVTTKFMRNPVRI 222
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 98/207 (47%), Gaps = 26/207 (12%)
Query: 55 GFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRS-SGTFA 113
GFE P+ +Q +AI I+ G DVL A +GTGKT + I LQ RID S A
Sbjct: 33 GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS---IAALQ----RIDTSVKAPQA 85
Query: 114 LVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLL 173
L+L PT EL L + +++ L F + + GG E A + I+V TPG +
Sbjct: 86 LMLAPTRELALQIQKVVMALA--FHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVF 143
Query: 174 DHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKR 233
D+++ F ++ I DEAD +L GF ++I +I +L
Sbjct: 144 DNIQR-RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT--------------- 187
Query: 234 QNLLLSATLNEKVNHLTKISLETPVLI 260
Q +LLSAT+ V +T + PV I
Sbjct: 188 QVVLLSATMPNDVLEVTTKFMRNPVRI 214
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 98/207 (47%), Gaps = 26/207 (12%)
Query: 55 GFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRS-SGTFA 113
GFE P+ +Q +AI I+ G DVL A +GTGKT + I LQ RID S A
Sbjct: 40 GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS---IAALQ----RIDTSVKAPQA 92
Query: 114 LVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLL 173
L+L PT EL L + +++ L F + + GG E A + I+V TPG +
Sbjct: 93 LMLAPTRELALQIQKVVMAL--AFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVF 150
Query: 174 DHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKR 233
D+++ F ++ I DEAD +L GF ++I +I +L
Sbjct: 151 DNIQR-RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT--------------- 194
Query: 234 QNLLLSATLNEKVNHLTKISLETPVLI 260
Q +LLSAT+ V +T + PV I
Sbjct: 195 QVVLLSATMPNDVLEVTTKFMRNPVRI 221
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 113/236 (47%), Gaps = 26/236 (11%)
Query: 26 ETVKEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTG 85
ET +E+ + F ++GL L + GFE P+ +Q +AI I+ GRDV+ + +GTG
Sbjct: 7 ETSEEVDVTPTFDTMGLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTG 65
Query: 86 KTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYV 145
KT + ++ L + T AL+L PT EL + + + L L + +
Sbjct: 66 KTATFSISVLQCLDI------QVRETQALILAPTRELAVQIQKGLLA-LGDYMNVQCHAC 118
Query: 146 MGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTN-LRWIIFDEADRILELGFG 204
+GG N ++ +L G ++ TPG + D ++ S L T ++ ++ DEAD +L GF
Sbjct: 119 IGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS--LRTRAIKMLVLDEADEMLNKGFK 176
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
++I ++ L Q +L+SATL ++ +T + P+ I
Sbjct: 177 EQIYDVYRYLPPAT---------------QVVLISATLPHEILEMTNKFMTDPIRI 217
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 113/236 (47%), Gaps = 26/236 (11%)
Query: 26 ETVKEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTG 85
ET +E+ + F ++GL L + GFE P+ +Q +AI I+ GRDV+ + +GTG
Sbjct: 29 ETSEEVDVTPTFDTMGLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTG 87
Query: 86 KTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYV 145
KT + ++ L + T AL+L PT EL + + + L L + +
Sbjct: 88 KTATFSISVLQCLDI------QVRETQALILAPTRELAVQIQKGLLA-LGDYMNVQCHAC 140
Query: 146 MGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTN-LRWIIFDEADRILELGFG 204
+GG N ++ +L G ++ TPG + D ++ S L T ++ ++ DEAD +L GF
Sbjct: 141 IGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS--LRTRAIKMLVLDEADEMLNKGFK 198
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
++I ++ L Q +L+SATL ++ +T + P+ I
Sbjct: 199 EQIYDVYRYLPPAT---------------QVVLISATLPHEILEMTNKFMTDPIRI 239
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 113/236 (47%), Gaps = 26/236 (11%)
Query: 26 ETVKEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTG 85
ET +E+ + F ++GL L + GFE P+ +Q +AI I+ GRDV+ + +GTG
Sbjct: 29 ETSEEVDVTPTFDTMGLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTG 87
Query: 86 KTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYV 145
KT + ++ L + T AL+L PT EL + + + L L + +
Sbjct: 88 KTATFSISVLQCLDI------QVRETQALILAPTRELAVQIQKGLLA-LGDYMNVQCHAC 140
Query: 146 MGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTN-LRWIIFDEADRILELGFG 204
+GG N ++ +L G ++ TPG + D ++ S L T ++ ++ DEAD +L GF
Sbjct: 141 IGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS--LRTRAIKMLVLDEADEMLNKGFK 198
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
++I ++ L Q +L+SATL ++ +T + P+ I
Sbjct: 199 EQIYDVYRYLPPAT---------------QVVLISATLPHEILEMTNKFMTDPIRI 239
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 113/236 (47%), Gaps = 26/236 (11%)
Query: 26 ETVKEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTG 85
ET +E+ + F ++GL L + GFE P+ +Q +AI I+ GRDV+ + +GTG
Sbjct: 28 ETSEEVDVTPTFDTMGLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTG 86
Query: 86 KTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYV 145
KT + ++ L + T AL+L PT EL + + + L L + +
Sbjct: 87 KTATFSISVLQCLDI------QVRETQALILAPTRELAVQIQKGLLA-LGDYMNVQCHAC 139
Query: 146 MGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTN-LRWIIFDEADRILELGFG 204
+GG N ++ +L G ++ TPG + D ++ S L T ++ ++ DEAD +L GF
Sbjct: 140 IGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS--LRTRAIKMLVLDEADEMLNKGFK 197
Query: 205 KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
++I ++ L Q +L+SATL ++ +T + P+ I
Sbjct: 198 EQIYDVYRYLPPAT---------------QVVLISATLPHEILEMTNKFMTDPIRI 238
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 25/210 (11%)
Query: 54 LGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 113
L F PT++Q + IP L G + + TGTGKT AYL PI ++ + A
Sbjct: 22 LRFYKPTEIQERIIPGALRGESXVGQSQTGTGKTHAYLLPIXEKIKPERAEVQ------A 75
Query: 114 LVLVPTSELCLLVY-EILQ--KLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPG 170
++ PT EL +Y E L+ K + R IV ++GG ++ K +L I++ TPG
Sbjct: 76 VITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGGTDKQKALEKLNVQPHIVIGTPG 135
Query: 171 HLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSN 230
+ D ++ + +HT ++ DEAD L+ GF ++++I +R +
Sbjct: 136 RINDFIREQALDVHTA-HILVVDEADLXLDXGFITDVDQI----AARXPKDL-------- 182
Query: 231 VKRQNLLLSATLNEKVNHLTKISLETPVLI 260
Q L+ SAT+ EK+ K E P +
Sbjct: 183 ---QXLVFSATIPEKLKPFLKKYXENPTFV 209
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 103/210 (49%), Gaps = 31/210 (14%)
Query: 42 LDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSY 101
++ + +RE +GF+ T+VQ++ IP++L G++V+V A TG+GKT AY PI+
Sbjct: 1 MNEKIEQAIRE-MGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPIL------ 53
Query: 102 SPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKG 161
G +LV+ PT EL V ++ + R+ V GG + R+R
Sbjct: 54 ------ELGMKSLVVTPTRELTRQVASHIRD-IGRYMDTKVAEVYGGMPYKAQINRVRNA 106
Query: 162 ISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIAS 221
I+VATPG LLD L ++ +I DEAD + E+GF +I+ IL +R I
Sbjct: 107 -DIVVATPGRLLD-LWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITG 164
Query: 222 IGEGNEVSNVKRQNLLLSATLNEKVNHLTK 251
L SAT+ E++ + K
Sbjct: 165 ---------------LFSATIPEEIRKVVK 179
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 94/207 (45%), Gaps = 26/207 (12%)
Query: 55 GFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRS-SGTFA 113
GFE P+ +Q +AI I+ G DVL A +GTGKT + I LQ RID S A
Sbjct: 40 GFEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGTFS---IAALQ----RIDTSVKAPQA 92
Query: 114 LVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLL 173
L L PT EL L + +++ L F + + GG E A + I+V TPG +
Sbjct: 93 LXLAPTRELALQIQKVVXALA--FHXDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVF 150
Query: 174 DHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKR 233
D+++ F ++ I DEAD L GF ++I +I +L
Sbjct: 151 DNIQR-RRFRTDKIKXFILDEADEXLSSGFKEQIYQIFTLLPPTT--------------- 194
Query: 234 QNLLLSATLNEKVNHLTKISLETPVLI 260
Q +LLSAT V +T PV I
Sbjct: 195 QVVLLSATXPNDVLEVTTKFXRNPVRI 221
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 107/225 (47%), Gaps = 26/225 (11%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F ++GL L + GFE P+ +Q +AI I+ GRDV+ + +GTGKT + ++
Sbjct: 3 FDTMGLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 61
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L + T AL+L PT EL + V + L L + + +GG N ++
Sbjct: 62 CLDI------QVRETQALILAPTRELAVQVQKGLLA-LGDYMNVQSHACIGGTNVGEDIR 114
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTN-LRWIIFDEADRILELGFGKEIEEILDILG 215
+L G ++ TPG + D ++ S L T ++ ++ DEAD +L GF ++I ++ L
Sbjct: 115 KLDYGQHVVAGTPGRVFDMIRRRS--LRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP 172
Query: 216 SRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
Q +L+SATL +V +T + P+ I
Sbjct: 173 PAT---------------QVVLISATLPHEVLEMTNKFMTDPIRI 202
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 96/210 (45%), Gaps = 30/210 (14%)
Query: 55 GFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 114
GFE P+ +Q +AI + G DV+ A +GTGKT + I+ L+ T AL
Sbjct: 49 GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI------EFKETQAL 102
Query: 115 VLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLR-KGISILVATPGHLL 173
VL PT EL + +++ L + +GG N E +L+ + I+V TPG +
Sbjct: 103 VLAPTRELAQQIQKVILA-LGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVF 161
Query: 174 DHLKHTSSFLHTNLRWI---IFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSN 230
D L + + +WI + DEAD +L GF +I EI L N
Sbjct: 162 DMLNRR----YLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKL---------------N 202
Query: 231 VKRQNLLLSATLNEKVNHLTKISLETPVLI 260
Q +LLSAT+ V +TK + P+ I
Sbjct: 203 TSIQVVLLSATMPTDVLEVTKKFMRDPIRI 232
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 19/210 (9%)
Query: 55 GFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 114
GF+ PT +Q QAIPV+L GR++L +A TG+GKT+A+ PI+ L+ + + G AL
Sbjct: 48 GFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPA-----NKGFRAL 102
Query: 115 VLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLD 174
++ PT EL ++ L K+ + + K + K ILV TP L+
Sbjct: 103 IISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIY 162
Query: 175 HLKHTSSFLH-TNLRWIIFDEADRILELGFGKEIEEILDILGSRN-IASIGEGNEVSNVK 232
LK + ++ W++ DE+D++ E G G R+ +ASI V+
Sbjct: 163 LLKQDPPGIDLASVEWLVVDESDKLFEDG----------KTGFRDQLASIFLACTSHKVR 212
Query: 233 RQNLLLSATLNEKVNHLTKISLETPVLIGL 262
R + SAT V K++L+ + + +
Sbjct: 213 RA--MFSATFAYDVEQWCKLNLDNVISVSI 240
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 107/225 (47%), Gaps = 26/225 (11%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F ++GL L + GFE P+ +Q +AI I+ GRDV+ + +GTGKT + ++
Sbjct: 3 FDTMGLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 61
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L + T AL+L PT EL + V + L L + + +GG N ++
Sbjct: 62 CLDI------QVRETQALILAPTRELAVQVQKGLLA-LGDYMNVQCHACIGGTNVGEDIR 114
Query: 157 RLRKGISILVATPGHLLDHLKHTSSFLHTN-LRWIIFDEADRILELGFGKEIEEILDILG 215
+L G ++ TPG + D ++ S L T ++ ++ DEAD +L GF ++I ++ L
Sbjct: 115 KLDYGQHVVAGTPGRVFDMIRRRS--LRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP 172
Query: 216 SRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
Q +L+SATL ++ +T + P+ I
Sbjct: 173 PAT---------------QVVLISATLPHEILEMTNKFMTDPIRI 202
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 98/208 (47%), Gaps = 26/208 (12%)
Query: 55 GFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 114
GFE P+ +Q +AI + G DV+ A +GTGKT + I+ ++ +D + T AL
Sbjct: 59 GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-----LDLKA-TQAL 112
Query: 115 VLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLR-KGISILVATPGHLL 173
VL PT EL + +++ L + +GG N E +L+ + I+V TPG +
Sbjct: 113 VLAPTRELAQQIQKVVMA-LGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVF 171
Query: 174 DHLKHTSSFLHTN-LRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVK 232
D L +L ++ + DEAD +L GF +I +I L S
Sbjct: 172 DMLNR--RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT-------------- 215
Query: 233 RQNLLLSATLNEKVNHLTKISLETPVLI 260
Q +LLSAT+ V +TK + P+ I
Sbjct: 216 -QVVLLSATMPSDVLEVTKKFMRDPIRI 242
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 98/208 (47%), Gaps = 26/208 (12%)
Query: 55 GFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 114
GFE P+ +Q +AI + G DV+ A +GTGKT + I+ ++ +D + T AL
Sbjct: 33 GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIE-----LDLKA-TQAL 86
Query: 115 VLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLR-KGISILVATPGHLL 173
VL PT EL + +++ L + +GG N E +L+ + I+V TPG +
Sbjct: 87 VLAPTRELAQQIQKVVMA-LGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVF 145
Query: 174 DHLKHTSSFLHTN-LRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVK 232
D L +L ++ + DEAD +L GF +I +I L S
Sbjct: 146 DMLNR--RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT-------------- 189
Query: 233 RQNLLLSATLNEKVNHLTKISLETPVLI 260
Q +LLSAT+ V +TK + P+ I
Sbjct: 190 -QVVLLSATMPSDVLEVTKKFMRDPIRI 216
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 106/217 (48%), Gaps = 32/217 (14%)
Query: 55 GFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 114
GFE P++VQ + IP + G DVL A +G GKT ++ + L+ + ++ L
Sbjct: 26 GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVS------VL 79
Query: 115 VLVPTSELCLLVYEILQKLLHRFRWIVP----GYVMGGGNRSKEKARLRKGI-SILVATP 169
V+ T EL + K RF +P GG + K++ L+K I+V TP
Sbjct: 80 VMCHTRELAFQI----SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP 135
Query: 170 GHLLDHLKHTSSFLHTNLRWIIFDEADRILE-LGFGKEIEEILDILGSRNIASIGEGNEV 228
G +L L S +++ I DEAD++LE L ++++EI +
Sbjct: 136 GRIL-ALARNKSLNLKHIKHFILDEADKMLEQLDMRRDVQEIF---------------RM 179
Query: 229 SNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265
+ ++Q ++ SATL++++ + + ++ P+ I +D++
Sbjct: 180 TPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDE 216
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 113/234 (48%), Gaps = 37/234 (15%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIIN 96
F SL L + + LR GFE P+ VQ +AIP+ G D++V A +GTGKT + ++
Sbjct: 26 FESLLLSRPVLEGLRAA-GFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALD 84
Query: 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA 156
L + + T L+L PT E+ + ++ ++ + + + +GG S++K
Sbjct: 85 SL------VLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKT 138
Query: 157 RLRKGISILVATPGHL-----LDHLKHTSSFLHTNLRWIIFDEADRILELG-FGKEIEEI 210
RL+K I V +PG + LD+L S +R I DEAD++LE G F ++I I
Sbjct: 139 RLKK-CHIAVGSPGRIKQLIELDYLNPGS------IRLFILDEADKLLEEGSFQEQINWI 191
Query: 211 LDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKV-NHLTKISLETPVLIGLD 263
L + +Q L +SAT E + N LTK + P + L+
Sbjct: 192 YSSLPA---------------SKQMLAVSATYPEFLANALTKY-MRDPTFVRLN 229
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 105/217 (48%), Gaps = 32/217 (14%)
Query: 55 GFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 114
GFE P++VQ + IP + G DVL A +G GKT ++ + L+ + ++ L
Sbjct: 27 GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVS------VL 80
Query: 115 VLVPTSELCLLVYEILQKLLHRFRWIVP----GYVMGGGNRSKEKARLRKGI-SILVATP 169
V+ T EL + K RF +P GG + K++ L+K I+V TP
Sbjct: 81 VMCHTRELAFQI----SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP 136
Query: 170 GHLLDHLKHTSSFLHTNLRWIIFDEADRILE-LGFGKEIEEILDILGSRNIASIGEGNEV 228
G +L L S +++ I DE D++LE L ++++EI +
Sbjct: 137 GRIL-ALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIF---------------RM 180
Query: 229 SNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265
+ ++Q ++ SATL++++ + + ++ P+ I +D++
Sbjct: 181 TPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDE 217
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 105/217 (48%), Gaps = 32/217 (14%)
Query: 55 GFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 114
GFE P++VQ + IP + G DVL A +G GKT ++ + L+ + ++ L
Sbjct: 27 GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVS------VL 80
Query: 115 VLVPTSELCLLVYEILQKLLHRFRWIVP----GYVMGGGNRSKEKARLRKGIS-ILVATP 169
V+ T EL + K RF +P GG + K++ L+K I+V TP
Sbjct: 81 VMCHTRELAFQI----SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP 136
Query: 170 GHLLDHLKHTSSFLHTNLRWIIFDEADRILE-LGFGKEIEEILDILGSRNIASIGEGNEV 228
G +L L S +++ I DE D++LE L ++++EI +
Sbjct: 137 GRIL-ALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIF---------------RM 180
Query: 229 SNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265
+ ++Q ++ SATL++++ + + ++ P+ I +D++
Sbjct: 181 TPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDE 217
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 91/207 (43%), Gaps = 24/207 (11%)
Query: 55 GFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 114
GFE P+ +Q +AI + G DV+ A +GTG T + I+ ++ +D + T AL
Sbjct: 34 GFEXPSAIQQRAILPCIXGYDVIAQAQSGTGXTATFAISILQQIE-----LDLXA-TQAL 87
Query: 115 VLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLD 174
VL PT EL + ++ L + G R++ + + I+V TPG + D
Sbjct: 88 VLAPTRELAQQIQXVVMALGDYMGASCHACIGGTNVRAEVQXLQMEAPHIIVGTPGRVFD 147
Query: 175 HLKHTSSFLH-TNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKR 233
L +L + + DEAD +L GF +I +I L S
Sbjct: 148 MLNR--RYLSPXYIXMFVLDEADEMLSRGFXDQIYDIFQXLNSNT--------------- 190
Query: 234 QNLLLSATLNEKVNHLTKISLETPVLI 260
Q +LLSAT+ V +T + P+ I
Sbjct: 191 QVVLLSATMPSDVLEVTXXFMRDPIRI 217
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 102/211 (48%), Gaps = 30/211 (14%)
Query: 55 GFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 114
GFE P++VQ + IP + G DVL A +G GKT ++ + L+ + ++ L
Sbjct: 33 GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVS------VL 86
Query: 115 VLVPTSELCLLV---YEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGIS-ILVATPG 170
V+ T EL + YE K + + V GG + K++ L+K I+V TPG
Sbjct: 87 VMCHTRELAFQISKEYERFSKYMPNVKVAV---FFGGLSIKKDEEVLKKNCPHIVVGTPG 143
Query: 171 HLLDHLKHTSSFLHTNLRWIIFDEADRILE-LGFGKEIEEILDILGSRNIASIGEGNEVS 229
+L L S +++ I DE D++LE L ++++EI ++
Sbjct: 144 RILA-LARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIF---------------RMT 187
Query: 230 NVKRQNLLLSATLNEKVNHLTKISLETPVLI 260
++Q ++ SATL++++ + + ++ P+ I
Sbjct: 188 PHEKQVMMFSATLSKEIRPVCRKFMQDPMEI 218
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 106/231 (45%), Gaps = 45/231 (19%)
Query: 31 IFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSG--RDVLVNAATGTGKTV 88
++++ F LGL L + + F+ P+K+Q +A+P++L R+++ + +GTGKT
Sbjct: 18 LYSAKSFDELGLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTA 76
Query: 89 AYLAPIINHL--QSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVM 146
A+ ++ + + SP+ A+ L P+ EL E++Q+ + +F I ++
Sbjct: 77 AFSLTMLTRVNPEDASPQ--------AICLAPSRELARQTLEVVQE-MGKFTKITSQLIV 127
Query: 147 GGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 206
S EK + + ++V TPG +LD ++ L ++ + DEAD +L+
Sbjct: 128 PD---SFEKNK-QINAQVIVGTPGTVLDLMRRKLMQLQ-KIKIFVLDEADNMLD------ 176
Query: 207 IEEILDILGSRNIASIGEGNEVSNVKR------QNLLLSATLNEKVNHLTK 251
G G++ VKR Q +L SAT + V K
Sbjct: 177 --------------QQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAK 213
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 102/225 (45%), Gaps = 45/225 (20%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSG--RDVLVNAATGTGKTVAYLAPI 94
F LGL L + + F+ P+K+Q +A+P++L R+++ + +GTGKT A+ +
Sbjct: 7 FDELGLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65
Query: 95 INHL--QSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRS 152
+ + + SP+ A+ L P+ EL E++Q+ + +F I ++ S
Sbjct: 66 LTRVNPEDASPQ--------AICLAPSRELARQTLEVVQE-MGKFTKITSQLIVPD---S 113
Query: 153 KEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 212
EK + + ++V TPG +LD ++ L ++ + DEAD +L+
Sbjct: 114 FEKNK-QINAQVIVGTPGTVLDLMRRKLMQLQ-KIKIFVLDEADNMLD------------ 159
Query: 213 ILGSRNIASIGEGNEVSNVKR------QNLLLSATLNEKVNHLTK 251
G G++ VKR Q +L SAT + V K
Sbjct: 160 --------QQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAK 196
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 102/225 (45%), Gaps = 45/225 (20%)
Query: 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSG--RDVLVNAATGTGKTVAYLAPI 94
F LGL L + + F+ P+K+Q +A+P++L R+++ + +GTGKT A+ +
Sbjct: 7 FDELGLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65
Query: 95 INHL--QSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRS 152
+ + + SP+ A+ L P+ EL E++Q+ + +F I ++ S
Sbjct: 66 LTRVNPEDASPQ--------AICLAPSRELARQTLEVVQE-MGKFTKITSQLIVPD---S 113
Query: 153 KEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILD 212
EK + + ++V TPG +LD ++ L ++ + DEAD +L+
Sbjct: 114 FEKNK-QINAQVIVGTPGTVLDLMRRKLMQLQ-KIKIFVLDEADNMLD------------ 159
Query: 213 ILGSRNIASIGEGNEVSNVKR------QNLLLSATLNEKVNHLTK 251
G G++ VKR Q +L SAT + V K
Sbjct: 160 --------QQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAK 196
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 99/217 (45%), Gaps = 37/217 (17%)
Query: 54 LGFEAPTKVQAQAIPVILS--GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 111
+GF P+K+Q A+P++L+ ++++ + +GTGKT A++ +++ ++ +
Sbjct: 43 MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP------ANKYP 96
Query: 112 FALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGH 171
L L PT EL L ++++++ + + Y + GN+ + ++ + I++ TPG
Sbjct: 97 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAV-RGNKLERGQKISE--QIVIGTPGT 153
Query: 172 LLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNV 231
+LD ++ + DEAD + IA+ G ++ +
Sbjct: 154 VLDWCSKLKFIDPKKIKVFVLDEADVM--------------------IATQGHQDQSIRI 193
Query: 232 KR------QNLLLSATLNEKVNHLTKISLETPVLIGL 262
+R Q LL SAT + V + + P +I L
Sbjct: 194 QRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 230
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 101/219 (46%), Gaps = 41/219 (18%)
Query: 54 LGFEAPTKVQAQAIPVILS--GRDVLVNAATGTGKTVAYLAPIINHLQSYS--PRIDRSS 109
+GF P+K+Q A+P++L+ ++++ + +GTGKT A++ +++ ++ + P+
Sbjct: 80 MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ----- 134
Query: 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATP 169
L L PT EL L ++++++ + + Y + GN+ + ++ + I++ TP
Sbjct: 135 ---CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAV-RGNKLERGQKISE--QIVIGTP 188
Query: 170 GHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVS 229
G +LD ++ + DEAD + IA+ G ++
Sbjct: 189 GTVLDWCSKLKFIDPKKIKVFVLDEADVM--------------------IATQGHQDQSI 228
Query: 230 NVKR------QNLLLSATLNEKVNHLTKISLETPVLIGL 262
++R Q LL SAT + V + + P +I L
Sbjct: 229 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 267
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 101/219 (46%), Gaps = 41/219 (18%)
Query: 54 LGFEAPTKVQAQAIPVILS--GRDVLVNAATGTGKTVAYLAPIINHLQSYS--PRIDRSS 109
+GF P+K+Q A+P++L+ ++++ + +GTGKT A++ +++ ++ + P+
Sbjct: 43 MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ----- 97
Query: 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATP 169
L L PT EL L ++++++ + + Y + GN+ + ++ + I++ TP
Sbjct: 98 ---CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAV-RGNKLERGQKISE--QIVIGTP 151
Query: 170 GHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVS 229
G +LD ++ + DEAD + IA+ G ++
Sbjct: 152 GTVLDWCSKLKFIDPKKIKVFVLDEADVM--------------------IATQGHQDQSI 191
Query: 230 NVKR------QNLLLSATLNEKVNHLTKISLETPVLIGL 262
++R Q LL SAT + V + + P +I L
Sbjct: 192 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 230
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 99/217 (45%), Gaps = 37/217 (17%)
Query: 54 LGFEAPTKVQAQAIPVILS--GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 111
+GF P+K+Q A+P++L+ ++++ + +GTGKT A++ +++ ++ +
Sbjct: 59 MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ----- 113
Query: 112 FALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGH 171
L L PT EL L ++++++ + + Y + GN+ + ++ + I++ TPG
Sbjct: 114 -CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAV-RGNKLERGQKISE--QIVIGTPGT 169
Query: 172 LLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNV 231
+LD ++ + DEAD + IA+ G ++ +
Sbjct: 170 VLDWCSKLKFIDPKKIKVFVLDEADVM--------------------IATQGHQDQSIRI 209
Query: 232 KR------QNLLLSATLNEKVNHLTKISLETPVLIGL 262
+R Q LL SAT + V + + P +I L
Sbjct: 210 QRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 246
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 101/219 (46%), Gaps = 41/219 (18%)
Query: 54 LGFEAPTKVQAQAIPVILS--GRDVLVNAATGTGKTVAYLAPIINHLQSYS--PRIDRSS 109
+GF P+K+Q A+P++L+ ++++ + +GTGKT A++ +++ ++ + P+
Sbjct: 110 MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ----- 164
Query: 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATP 169
L L PT EL L ++++++ + + Y + GN+ + ++ + I++ TP
Sbjct: 165 ---CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAV-RGNKLERGQKISE--QIVIGTP 218
Query: 170 GHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVS 229
G +LD ++ + DEAD + IA+ G ++
Sbjct: 219 GTVLDWCSKLKFIDPKKIKVFVLDEADVM--------------------IATQGHQDQSI 258
Query: 230 NVKR------QNLLLSATLNEKVNHLTKISLETPVLIGL 262
++R Q LL SAT + V + + P +I L
Sbjct: 259 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 297
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 99/217 (45%), Gaps = 37/217 (17%)
Query: 54 LGFEAPTKVQAQAIPVILS--GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 111
+GF P+K+Q A+P++L+ ++++ + +GTGKT A++ +++ ++ +
Sbjct: 110 MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ----- 164
Query: 112 FALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGH 171
L L PT EL L ++++++ + + Y + GN+ + ++ + I++ TPG
Sbjct: 165 -CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAV-RGNKLERGQKISE--QIVIGTPGT 220
Query: 172 LLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNV 231
+LD ++ + DEAD + IA+ G ++ +
Sbjct: 221 VLDWCSKLKFIDPKKIKVFVLDEADVM--------------------IATQGHQDQSIRI 260
Query: 232 KR------QNLLLSATLNEKVNHLTKISLETPVLIGL 262
+R Q LL SAT + V + + P +I L
Sbjct: 261 QRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 297
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 92/189 (48%), Gaps = 30/189 (15%)
Query: 61 KVQAQAIPVILSG--RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP 118
K+Q +A+P++LS R+++ + +GTGKT A+ +++ + + P+ A+ L P
Sbjct: 144 KIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQ------AICLAP 197
Query: 119 TSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKH 178
+ EL + +++ ++ ++ G + + A++ I++ TPG ++D +K
Sbjct: 198 SRELARQIMDVVTEM---GKYTEVKTAFGIKDSVPKGAKI--DAQIVIGTPGTVMDLMKR 252
Query: 179 TSSFLHTNLRWIIFDEADRIL-ELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLL 237
+++ + DEAD +L + G G + I +L RN Q +L
Sbjct: 253 -RQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLL-PRNT--------------QIVL 296
Query: 238 LSATLNEKV 246
SAT +E+V
Sbjct: 297 FSATFSERV 305
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 40 LGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPII 95
L L+S L+E G++ Q + I +LSGRD LV TG GK++ Y P +
Sbjct: 7 LNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVXPTGGGKSLCYQIPAL 62
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To
Atp-Gamma-S
Length = 523
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 40 LGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPII 95
L L+S L+E G++ Q + I +LSGRD LV TG GK++ Y P +
Sbjct: 7 LNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPAL 62
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 14/134 (10%)
Query: 66 AIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLL 125
A+P + G++ ++ A TG GKT L +HL+ + P+ + F +P
Sbjct: 21 ALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLKKF-PQGQKGKVVFFANQIP------- 71
Query: 126 VYE----ILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSS 181
VYE + K R + V G + G + ++ + I++ TP L+++LK +
Sbjct: 72 VYEQQKSVFSKYFERHGYRVTG-ISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 130
Query: 182 FLHTNLRWIIFDEA 195
+ +IFDE
Sbjct: 131 PSLSIFTLMIFDEC 144
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 14/134 (10%)
Query: 66 AIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLL 125
A+P + G++ ++ A TG GKT L +HL+ + P+ + F +P
Sbjct: 22 ALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLKKF-PQGQKGKVVFFANQIP------- 72
Query: 126 VYE----ILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSS 181
VYE + K R + V G + G + ++ + I++ TP L+++LK +
Sbjct: 73 VYEQNKSVFSKYFERHGYRVTG-ISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 131
Query: 182 FLHTNLRWIIFDEA 195
+ +IFDE
Sbjct: 132 PSLSIFTLMIFDEC 145
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 14/134 (10%)
Query: 66 AIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLL 125
A+P + G++ ++ A TG GKT L +HL+ + P+ + F +P
Sbjct: 13 ALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLKKF-PQGQKGKVVFFANQIP------- 63
Query: 126 VYE----ILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSS 181
VYE + K R + V G + G + ++ + I++ TP L+++LK +
Sbjct: 64 VYEQNKSVFSKYFERHGYRVTG-ISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 122
Query: 182 FLHTNLRWIIFDEA 195
+ +IFDE
Sbjct: 123 PSLSIFTLMIFDEC 136
>pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain
pdb|4A36|A Chain A, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
pdb|4A36|B Chain B, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
Length = 556
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 76/180 (42%), Gaps = 34/180 (18%)
Query: 66 AIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLL 125
A P I +G++ L+ A TG+GKT + +H Q+ P ++ F VP
Sbjct: 16 AQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNM-PAGRKAKVVFLATKVP------- 66
Query: 126 VYEILQKLLHRFRWIVPGYVMGG------GNRSKEKARLRKGISILVATPGHLLDHLKHT 179
VYE QK + + + GY + G N S EK + + I+V TP L++ +
Sbjct: 67 VYE-QQKNVFKHHFERQGYSVQGISGENFSNVSVEK--VIEDSDIIVVTPQILVNSFEDG 123
Query: 180 SSFLHTNLRWIIFDEA-------------DRILELGFGKEIEEILDILGSRNIASIGEGN 226
+ + +IFDE R LE F ++ ILG AS+G GN
Sbjct: 124 TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNS-ASQLPQILGL--TASVGVGN 180
>pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I
pdb|4A2W|B Chain B, Structure Of Full-Length Duck Rig-I
Length = 936
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 76/180 (42%), Gaps = 34/180 (18%)
Query: 66 AIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLL 125
A P I +G++ L+ A TG+GKT + +H Q+ P ++ F VP
Sbjct: 257 AQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNM-PAGRKAKVVFLATKVP------- 307
Query: 126 VYEILQKLLHRFRWIVPGYVMGG------GNRSKEKARLRKGISILVATPGHLLDHLKHT 179
VYE QK + + + GY + G N S EK + + I+V TP L++ +
Sbjct: 308 VYE-QQKNVFKHHFERQGYSVQGISGENFSNVSVEK--VIEDSDIIVVTPQILVNSFEDG 364
Query: 180 SSFLHTNLRWIIFDEA-------------DRILELGFGKEIEEILDILGSRNIASIGEGN 226
+ + +IFDE R LE F ++ ILG AS+G GN
Sbjct: 365 TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNS-ASQLPQILGL--TASVGVGN 421
>pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|B Chain B, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|D Chain D, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|E Chain E, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
Length = 797
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 76/180 (42%), Gaps = 34/180 (18%)
Query: 66 AIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLL 125
A P I +G++ L+ A TG+GKT + +H Q+ P ++ F VP
Sbjct: 257 AQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNM-PAGRKAKVVFLATKVP------- 307
Query: 126 VYEILQKLLHRFRWIVPGYVMGG------GNRSKEKARLRKGISILVATPGHLLDHLKHT 179
VYE QK + + + GY + G N S EK + + I+V TP L++ +
Sbjct: 308 VYE-QQKNVFKHHFERQGYSVQGISGENFSNVSVEK--VIEDSDIIVVTPQILVNSFEDG 364
Query: 180 SSFLHTNLRWIIFDEA-------------DRILELGFGKEIEEILDILGSRNIASIGEGN 226
+ + +IFDE R LE F ++ ILG AS+G GN
Sbjct: 365 TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNS-ASQLPQILGL--TASVGVGN 421
>pdb|3MHZ|A Chain A, 1.7a Structure Of 2-Fluorohistidine Labeled Protective
Antigen
pdb|3Q8F|A Chain A, Crystal Structure Of 2-Fluorohistine Labeled Protective
Antigen (Ph 5.8)
Length = 735
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 230 NVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKSNVHFGSLESDVKEEVEH 289
N+K Q L+AT V L KI L + I + +K+F D++N+ G+ ES VKE
Sbjct: 561 NIKNQLAELNATNIYTV--LDKIKLNAKMNILIRDKRFXYDRNNIAVGADESVVKEAXRE 618
Query: 290 PNTTLSSSTEDFML 303
++SSTE +L
Sbjct: 619 ---VINSSTEGLLL 629
>pdb|1TZN|A Chain A, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|B Chain B, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|C Chain C, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|D Chain D, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|E Chain E, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|F Chain F, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|G Chain G, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|H Chain H, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|I Chain I, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|J Chain J, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|K Chain K, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|L Chain L, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|M Chain M, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|O Chain O, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZO|A Chain A, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|B Chain B, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|C Chain C, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|D Chain D, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|E Chain E, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|F Chain F, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|G Chain G, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|H Chain H, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|I Chain I, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|J Chain J, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|K Chain K, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|L Chain L, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|M Chain M, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
pdb|1TZO|O Chain O, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore
Length = 562
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 230 NVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKSNVHFGSLESDVKEEVEH 289
N+K Q L+AT V L KI L + I + +K+F D++N+ G+ ES VKE
Sbjct: 388 NIKNQLAELNATNIYTV--LDKIKLNAKMNILIRDKRFHYDRNNIAVGADESVVKEAHRE 445
Query: 290 PNTTLSSSTEDFML 303
++SSTE +L
Sbjct: 446 ---VINSSTEGLLL 456
>pdb|3HVD|A Chain A, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|B Chain B, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|C Chain C, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|D Chain D, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|E Chain E, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|F Chain F, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|G Chain G, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
pdb|3HVD|H Chain H, The Protective Antigen Component Of Anthrax Toxin Forms
Functional Octameric Complexes
Length = 548
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 230 NVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKSNVHFGSLESDVKEEVEH 289
N+K Q L+AT V L KI L + I + +K+F D++N+ G+ ES VKE
Sbjct: 374 NIKNQLAELNATNIYTV--LDKIKLNAKMNILIRDKRFHYDRNNIAVGADESVVKEAHRE 431
Query: 290 PNTTLSSSTEDFML 303
++SSTE +L
Sbjct: 432 ---VINSSTEGLLL 442
>pdb|3KWV|A Chain A, Structural Basis For The Unfolding Of Anthrax Lethal
Factor By Protective Antigen Oligomers
pdb|3KWV|B Chain B, Structural Basis For The Unfolding Of Anthrax Lethal
Factor By Protective Antigen Oligomers
pdb|3KWV|D Chain D, Structural Basis For The Unfolding Of Anthrax Lethal
Factor By Protective Antigen Oligomers
pdb|3KWV|E Chain E, Structural Basis For The Unfolding Of Anthrax Lethal
Factor By Protective Antigen Oligomers
Length = 548
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 230 NVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKSNVHFGSLESDVKEEVEH 289
N+K Q L+AT V L KI L + I + +K+F D++N+ G+ ES VKE
Sbjct: 374 NIKNQLAELNATNIYTV--LDKIKLNAKMNILIRDKRFHYDRNNIAVGADESVVKEAHRE 431
Query: 290 PNTTLSSSTEDFML 303
++SSTE +L
Sbjct: 432 ---VINSSTEGLLL 442
>pdb|3TEZ|A Chain A, Crystal Structure Of Anthrax Protective Antigen Mutant
S337c N664c And Dithiolacetone Modified To 1.8-A
Resolution
Length = 735
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 230 NVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKSNVHFGSLESDVKEEVEH 289
N+K Q L+AT V L KI L + I + +K+F D++N+ G+ ES VKE
Sbjct: 561 NIKNQLAELNATNIYTV--LDKIKLNAKMNILIRDKRFHYDRNNIAVGADESVVKEAHRE 618
Query: 290 PNTTLSSSTEDFML 303
++SSTE +L
Sbjct: 619 ---VINSSTEGLLL 629
>pdb|1T6B|X Chain X, Crystal Structure Of B. Anthracis Protective Antigen
Complexed With Human Anthrax Toxin Receptor
pdb|3Q8A|A Chain A, Crystal Structure Of Wt Protective Antigen (Ph 5.5)
pdb|3Q8B|A Chain A, Crystal Structure Of Wt Protective Antigen (Ph 9.0)
Length = 735
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 230 NVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKSNVHFGSLESDVKEEVEH 289
N+K Q L+AT V L KI L + I + +K+F D++N+ G+ ES VKE
Sbjct: 561 NIKNQLAELNATNIYTV--LDKIKLNAKMNILIRDKRFHYDRNNIAVGADESVVKEAHRE 618
Query: 290 PNTTLSSSTEDFML 303
++SSTE +L
Sbjct: 619 ---VINSSTEGLLL 629
>pdb|4EE2|A Chain A, Crystal Structure Of Anthrax Protective Antigen K446m
Mutant To 1.91-A Resolution
Length = 736
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 230 NVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKSNVHFGSLESDVKEEVEH 289
N+K Q L+AT V L KI L + I + +K+F D++N+ G+ ES VKE
Sbjct: 562 NIKNQLAELNATNIYTV--LDKIKLNAKMNILIRDKRFHYDRNNIAVGADESVVKEAHRE 619
Query: 290 PNTTLSSSTEDFML 303
++SSTE +L
Sbjct: 620 ---VINSSTEGLLL 630
>pdb|3Q8C|A Chain A, Crystal Structure Of Protective Antigen W346f (Ph 5.5)
pdb|3Q8E|A Chain A, Crystal Structure Of Protective Antigen W346f (Ph 8.5)
Length = 735
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 230 NVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKSNVHFGSLESDVKEEVEH 289
N+K Q L+AT V L KI L + I + +K+F D++N+ G+ ES VKE
Sbjct: 561 NIKNQLAELNATNIYTV--LDKIKLNAKMNILIRDKRFHYDRNNIAVGADESVVKEAHRE 618
Query: 290 PNTTLSSSTEDFML 303
++SSTE +L
Sbjct: 619 ---VINSSTEGLLL 629
>pdb|1ACC|A Chain A, Anthrax Protective Antigen
Length = 735
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 230 NVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKSNVHFGSLESDVKEEVEH 289
N+K Q L+AT V L KI L + I + +K+F D++N+ G+ ES VKE
Sbjct: 561 NIKNQLAELNATNIYTV--LDKIKLNAKMNILIRDKRFHYDRNNIAVGADESVVKEAHRE 618
Query: 290 PNTTLSSSTEDFML 303
++SSTE +L
Sbjct: 619 ---VINSSTEGLLL 629
>pdb|2CYB|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
pdb|2CYB|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
Length = 323
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 210 ILDILGSRNIASIGEGNEVSNVKRQNLLLSATLN-EKVNHLTKISLETPVLIGLDEKKFP 268
I ++ + +IA +G V + ++ + + A N ++ + + + L TP+L+GLD +K
Sbjct: 157 IYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRLGYSSPVCLHTPILVGLDGQKMS 216
Query: 269 EDKSN 273
K N
Sbjct: 217 SSKGN 221
>pdb|3TEY|A Chain A, Crystal Structure Of Anthrax Protective Antigen (Membrane
Insertion Loop Deleted) Mutant S337c N664c To 2.06-A
Resolution
Length = 715
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 230 NVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKSNVHFGSLESDVKEEVEH 289
N+K Q L+AT V L KI L + I + +K+F D++N+ G+ ES VKE
Sbjct: 541 NIKNQLAELNATNIYTV--LDKIKLNAKMNILIRDKRFHYDRNNIAVGADESVVKEAHRE 598
Query: 290 PNTTLSSSTEDFML 303
++SSTE +L
Sbjct: 599 ---VINSSTEGLLL 609
>pdb|3TEW|A Chain A, Crystal Structure Of Anthrax Protective Antigen (Membrane
Insertion Loop Deleted) To 1.45-A Resolution
pdb|3TEX|A Chain A, Crystal Structure Of Anthrax Protective Antigen (Membrane
Insertion Loop Deleted) To 1.7-A Resolution
Length = 715
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 230 NVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKSNVHFGSLESDVKEEVEH 289
N+K Q L+AT V L KI L + I + +K+F D++N+ G+ ES VKE
Sbjct: 541 NIKNQLAELNATNIYTV--LDKIKLNAKMNILIRDKRFHYDRNNIAVGADESVVKEAHRE 598
Query: 290 PNTTLSSSTEDFML 303
++SSTE +L
Sbjct: 599 ---VINSSTEGLLL 609
>pdb|3U44|A Chain A, Crystal Structure Of Addab-Dna Complex
pdb|3U4Q|A Chain A, Structure Of Addab-Dna Complex At 2.8 Angstroms
Length = 1232
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 69 VILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRID 106
++ +G+D+LV AA G+GKT + +I + + ID
Sbjct: 19 IVSTGQDILVAAAAGSGKTAVLVERMIRKITAEENPID 56
>pdb|1KCK|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant N193g
Length = 686
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 212 DILG---SRNIASIGEGNEVSNVKRQN------LLLSATLNEKVNHLTKISLETPVLIGL 262
D+LG + N S+G G SN +AT + H+ + + V I +
Sbjct: 458 DVLGGLLNGNTLSVGSGGAASNFTLAAGGTAVWQYTAATATPTIGHVGPMMAKPGVTITI 517
Query: 263 DEKKFPEDKSNVHFGS 278
D + F K V+FG+
Sbjct: 518 DGRGFGSSKGTVYFGT 533
>pdb|1CGX|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 212 DILG---SRNIASIGEGNEVSNVKRQN------LLLSATLNEKVNHLTKISLETPVLIGL 262
D+LG + N S+G G SN +AT + H+ + + V I +
Sbjct: 458 DVLGGLLNGNTLSVGSGGAASNFTLAAGGTAVWQYTAATATPTIGHVGPMMAKPGVTITI 517
Query: 263 DEKKFPEDKSNVHFGS 278
D + F K V+FG+
Sbjct: 518 DGRGFGSSKGTVYFGT 533
>pdb|1DTU|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase: A Mutant Y89dS146P COMPLEXED TO AN
Hexasaccharide Inhibitor
Length = 686
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 212 DILG---SRNIASIGEGNEVSNVKRQN------LLLSATLNEKVNHLTKISLETPVLIGL 262
D+LG + N S+G G SN +AT + H+ + + V I +
Sbjct: 458 DVLGGLLNGNTLSVGSGGAASNFTLAAGGTAVWQYTAATATPTIGHVGPMMAKPGVTITI 517
Query: 263 DEKKFPEDKSNVHFGS 278
D + F K V+FG+
Sbjct: 518 DGRGFGSSKGTVYFGT 533
>pdb|1CGW|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 212 DILG---SRNIASIGEGNEVSNVKRQN------LLLSATLNEKVNHLTKISLETPVLIGL 262
D+LG + N S+G G SN +AT + H+ + + V I +
Sbjct: 458 DVLGGLLNGNTLSVGSGGAASNFTLAAGGTAVWQYTAATATPTIGHVGPMMAKPGVTITI 517
Query: 263 DEKKFPEDKSNVHFGS 278
D + F K V+FG+
Sbjct: 518 DGRGFGSSKGTVYFGT 533
>pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant G179l
Length = 686
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 212 DILG---SRNIASIGEGNEVSNVKRQN------LLLSATLNEKVNHLTKISLETPVLIGL 262
D+LG + N S+G G SN +AT + H+ + + V I +
Sbjct: 458 DVLGGLLNGNTLSVGSGGAASNFTLAAGGTAVWQYTAATATPTIGHVGPMMAKPGVTITI 517
Query: 263 DEKKFPEDKSNVHFGS 278
D + F K V+FG+
Sbjct: 518 DGRGFGSSKGTVYFGT 533
>pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltoheptaose
pdb|1EO7|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltohexaose
Length = 686
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 212 DILG---SRNIASIGEGNEVSNVKRQN------LLLSATLNEKVNHLTKISLETPVLIGL 262
D+LG + N S+G G SN +AT + H+ + + V I +
Sbjct: 458 DVLGGLLNGNTLSVGSGGAASNFTLAAGGTAVWQYTAATATPTIGHVGPMMAKPGVTITI 517
Query: 263 DEKKFPEDKSNVHFGS 278
D + F K V+FG+
Sbjct: 518 DGRGFGSSKGTVYFGT 533
>pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
pdb|1TCM|B Chain B, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
Length = 686
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 212 DILG---SRNIASIGEGNEVSNVKRQN------LLLSATLNEKVNHLTKISLETPVLIGL 262
D+LG + N S+G G SN +AT + H+ + + V I +
Sbjct: 458 DVLGGLLNGNTLSVGSGGAASNFTLAAGGTAVWQYTAATATPTIGHVGPMMAKPGVTITI 517
Query: 263 DEKKFPEDKSNVHFGS 278
D + F K V+FG+
Sbjct: 518 DGRGFGSSKGTVYFGT 533
>pdb|1CXK|A Chain A, Complex Between A Maltononaose Substrate And Bacillus
Circulans Strain 251 Cgtase E257qD229N
pdb|1D3C|A Chain A, Michaelis Complex Of Bacillus Circulans Strain 251
Cyclodextrin Glycosyltransferase With Gamma-Cyclodextrin
pdb|1CXF|A Chain A, Complex Of A (D229nE257Q) DOUBLE MUTANT CGTASE FROM
Bacillus Circulans Strain 251 With Maltotetraose At 120
K And Ph 9.1 Obtained After Soaking The Crystal With
Alpha- Cyclodextrin
Length = 686
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 212 DILG---SRNIASIGEGNEVSNVKRQN------LLLSATLNEKVNHLTKISLETPVLIGL 262
D+LG + N S+G G SN +AT + H+ + + V I +
Sbjct: 458 DVLGGLLNGNTLSVGSGGAASNFTLAAGGTAVWQYTAATATPTIGHVGPMMAKPGVTITI 517
Query: 263 DEKKFPEDKSNVHFGS 278
D + F K V+FG+
Sbjct: 518 DGRGFGSSKGTVYFGT 533
>pdb|1CDG|A Chain A, Nucleotide Sequence And X-Ray Structure Of Cyclodextrin
Glycosyltransferase From Bacillus Circulans Strain 251
In A Maltose-Dependent Crystal Form
pdb|1CXE|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.1 Based On Diffraction Data Of A Crystal Soaked
With Alpha-Cyclodextrin
pdb|1CXH|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.6 Based On Diffraction Data Of A Crystal Soaked
With Maltoheptaose
pdb|1CXI|A Chain A, Wild-Type Cgtase From Bacillus Circulans Strain 251 At 120
K And Ph 7.55
pdb|2CXG|A Chain A, Cyclodextrin Glycosyltransferase Complexed To The
Inhibitor Acarbose
Length = 686
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 212 DILG---SRNIASIGEGNEVSNVKRQN------LLLSATLNEKVNHLTKISLETPVLIGL 262
D+LG + N S+G G SN +AT + H+ + + V I +
Sbjct: 458 DVLGGLLNGNTLSVGSGGAASNFTLAAGGTAVWQYTAATATPTIGHVGPMMAKPGVTITI 517
Query: 263 DEKKFPEDKSNVHFGS 278
D + F K V+FG+
Sbjct: 518 DGRGFGSSKGTVYFGT 533
>pdb|1CGY|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 212 DILG---SRNIASIGEGNEVSNVKRQN------LLLSATLNEKVNHLTKISLETPVLIGL 262
D+LG + N S+G G SN +AT + H+ + + V I +
Sbjct: 458 DVLGGLLNGNTLSVGSGGAASNFTLAAGGTAVWQYTAATATPTIGHVGPMMAKPGVTITI 517
Query: 263 DEKKFPEDKSNVHFGS 278
D + F K V+FG+
Sbjct: 518 DGRGFGSSKGTVYFGT 533
>pdb|1CGV|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
pdb|2DIJ|A Chain A, Complex Of A Y195f Mutant Cgtase From B. Circulans Strain
251 Complexed With A Maltononaose Inhibitor At Ph 9.8
Obtained After Soaking The Crystal With Acarbose And
Maltohexaose
Length = 686
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 212 DILG---SRNIASIGEGNEVSNVKRQN------LLLSATLNEKVNHLTKISLETPVLIGL 262
D+LG + N S+G G SN +AT + H+ + + V I +
Sbjct: 458 DVLGGLLNGNTLSVGSGGAASNFTLAAGGTAVWQYTAATATPTIGHVGPMMAKPGVTITI 517
Query: 263 DEKKFPEDKSNVHFGS 278
D + F K V+FG+
Sbjct: 518 DGRGFGSSKGTVYFGT 533
>pdb|1OT1|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135a
Length = 686
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 212 DILG---SRNIASIGEGNEVSNVKRQN------LLLSATLNEKVNHLTKISLETPVLIGL 262
D+LG + N S+G G SN +AT + H+ + + V I +
Sbjct: 458 DVLGGLLNGNTLSVGSGGAASNFTLAAGGTAVWQYTAATATPTIGHVGPMMAKPGVTITI 517
Query: 263 DEKKFPEDKSNVHFGS 278
D + F K V+FG+
Sbjct: 518 DGRGFGSSKGTVYFGT 533
>pdb|1PEZ|A Chain A, Bacillus Circulans Strain 251 Mutant A230v
Length = 686
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 212 DILG---SRNIASIGEGNEVSNVKRQN------LLLSATLNEKVNHLTKISLETPVLIGL 262
D+LG + N S+G G SN +AT + H+ + + V I +
Sbjct: 458 DVLGGLLNGNTLSVGSGGAASNFTLAAGGTAVWQYTAATATPTIGHVGPMMAKPGVTITI 517
Query: 263 DEKKFPEDKSNVHFGS 278
D + F K V+FG+
Sbjct: 518 DGRGFGSSKGTVYFGT 533
>pdb|1OT2|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135n
Length = 686
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 212 DILG---SRNIASIGEGNEVSNVKRQN------LLLSATLNEKVNHLTKISLETPVLIGL 262
D+LG + N S+G G SN +AT + H+ + + V I +
Sbjct: 458 DVLGGLLNGNTLSVGSGGAASNFTLAAGGTAVWQYTAATATPTIGHVGPMMAKPGVTITI 517
Query: 263 DEKKFPEDKSNVHFGS 278
D + F K V+FG+
Sbjct: 518 DGRGFGSSKGTVYFGT 533
>pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate And Bacillus
Circulans Strain 251 Cgtase E257q
Length = 686
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 212 DILG---SRNIASIGEGNEVSNVKRQN------LLLSATLNEKVNHLTKISLETPVLIGL 262
D+LG + N S+G G SN +AT + H+ + + V I +
Sbjct: 458 DVLGGLLNGNTLSVGSGGAASNFTLAAGGTAVWQYTAATATPTIGHVGPMMAKPGVTITI 517
Query: 263 DEKKFPEDKSNVHFGS 278
D + F K V+FG+
Sbjct: 518 DGRGFGSSKGTVYFGT 533
>pdb|1PJ9|A Chain A, Bacillus Circulans Strain 251 Loop Mutant 183-195
Length = 686
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 212 DILG---SRNIASIGEGNEVSNVKRQN------LLLSATLNEKVNHLTKISLETPVLIGL 262
D+LG + N S+G G SN +AT + H+ + + V I +
Sbjct: 458 DVLGGLLNGNTLSVGSGGAASNFTLAAGGTAVWQYTAATATPTIGHVGPMMAKPGVTITI 517
Query: 263 DEKKFPEDKSNVHFGS 278
D + F K V+FG+
Sbjct: 518 DGRGFGSSKGTVYFGT 533
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,715,561
Number of Sequences: 62578
Number of extensions: 358699
Number of successful extensions: 1310
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1159
Number of HSP's gapped (non-prelim): 92
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)