Query 043110
Match_columns 316
No_of_seqs 263 out of 2181
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 12:57:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043110.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043110hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0348 ATP-dependent RNA heli 100.0 9.6E-52 2.1E-56 373.6 19.0 273 29-314 130-403 (708)
2 KOG0330 ATP-dependent RNA heli 100.0 7.2E-50 1.6E-54 349.6 18.4 238 5-265 27-268 (476)
3 KOG0338 ATP-dependent RNA heli 100.0 2E-46 4.4E-51 337.4 17.7 226 35-280 181-406 (691)
4 KOG0331 ATP-dependent RNA heli 100.0 1.1E-44 2.3E-49 335.0 21.2 214 35-265 91-304 (519)
5 KOG0345 ATP-dependent RNA heli 100.0 5.6E-44 1.2E-48 319.1 22.5 233 34-283 3-241 (567)
6 KOG0346 RNA helicase [RNA proc 100.0 1.9E-44 4E-49 319.8 19.1 230 35-280 19-249 (569)
7 KOG0343 RNA Helicase [RNA proc 100.0 6.1E-45 1.3E-49 330.5 16.0 213 33-265 67-279 (758)
8 COG0513 SrmB Superfamily II DN 100.0 5.8E-43 1.3E-47 334.0 27.1 226 35-281 29-256 (513)
9 KOG0342 ATP-dependent RNA heli 100.0 3.4E-43 7.4E-48 315.9 20.0 218 31-266 78-296 (543)
10 PRK04837 ATP-dependent RNA hel 100.0 2.3E-39 4.9E-44 304.7 27.4 220 32-267 5-225 (423)
11 KOG0328 Predicted ATP-dependen 100.0 6E-41 1.3E-45 282.6 14.4 234 26-283 18-251 (400)
12 PRK10590 ATP-dependent RNA hel 100.0 3E-39 6.6E-44 306.1 26.5 227 36-280 2-228 (456)
13 KOG0339 ATP-dependent RNA heli 100.0 9.3E-40 2E-44 294.3 18.7 228 33-280 221-448 (731)
14 PTZ00110 helicase; Provisional 100.0 6.5E-39 1.4E-43 308.7 25.7 214 34-266 129-343 (545)
15 PRK11634 ATP-dependent RNA hel 100.0 8.2E-39 1.8E-43 311.1 26.5 220 35-277 6-225 (629)
16 PLN00206 DEAD-box ATP-dependen 100.0 1.1E-38 2.5E-43 306.0 27.1 218 33-269 119-337 (518)
17 PRK11776 ATP-dependent RNA hel 100.0 1.1E-38 2.4E-43 303.1 26.5 209 35-266 4-212 (460)
18 KOG0326 ATP-dependent RNA heli 100.0 9.3E-41 2E-45 285.8 10.6 224 32-280 82-305 (459)
19 KOG0340 ATP-dependent RNA heli 100.0 5.8E-40 1.3E-44 284.4 15.6 230 33-285 5-239 (442)
20 KOG0336 ATP-dependent RNA heli 100.0 7.6E-40 1.6E-44 288.3 15.2 216 32-266 216-432 (629)
21 PRK04537 ATP-dependent RNA hel 100.0 1.9E-38 4.2E-43 306.6 26.2 221 35-270 9-230 (572)
22 KOG0333 U5 snRNP-like RNA heli 100.0 3.3E-38 7.2E-43 285.4 18.6 243 35-280 245-500 (673)
23 KOG0341 DEAD-box protein abstr 100.0 9.8E-40 2.1E-44 285.9 8.3 223 33-272 168-397 (610)
24 PRK11192 ATP-dependent RNA hel 100.0 7.1E-37 1.5E-41 288.8 26.9 211 36-266 2-213 (434)
25 KOG0335 ATP-dependent RNA heli 100.0 7.2E-38 1.6E-42 285.3 15.0 232 35-280 74-311 (482)
26 PRK01297 ATP-dependent RNA hel 100.0 8.5E-36 1.8E-40 284.2 27.3 229 32-276 84-314 (475)
27 KOG0337 ATP-dependent RNA heli 100.0 1.6E-37 3.4E-42 274.5 14.1 227 34-283 20-246 (529)
28 KOG0334 RNA helicase [RNA proc 100.0 1E-36 2.2E-41 295.6 14.8 227 34-278 364-592 (997)
29 PTZ00424 helicase 45; Provisio 100.0 9.6E-35 2.1E-39 271.8 27.1 212 34-269 27-238 (401)
30 KOG0329 ATP-dependent RNA heli 100.0 2.2E-36 4.8E-41 251.9 11.0 226 32-280 39-266 (387)
31 cd00268 DEADc DEAD-box helicas 100.0 6.2E-34 1.3E-38 241.9 25.3 202 37-260 1-202 (203)
32 KOG0327 Translation initiation 100.0 3.3E-35 7E-40 257.9 13.2 223 36-282 27-250 (397)
33 KOG4284 DEAD box protein [Tran 100.0 2.8E-35 6.1E-40 271.8 13.1 226 33-282 23-249 (980)
34 KOG0347 RNA helicase [RNA proc 100.0 5.3E-35 1.1E-39 265.9 14.2 199 35-245 181-389 (731)
35 KOG0350 DEAD-box ATP-dependent 100.0 5.5E-33 1.2E-37 250.3 15.3 220 36-262 128-390 (620)
36 TIGR03817 DECH_helic helicase/ 100.0 5.1E-31 1.1E-35 261.2 23.2 199 41-260 20-221 (742)
37 KOG0332 ATP-dependent RNA heli 100.0 6.7E-32 1.4E-36 235.7 11.2 226 26-277 81-309 (477)
38 PF00270 DEAD: DEAD/DEAH box h 100.0 6.1E-29 1.3E-33 204.8 20.9 168 60-249 1-169 (169)
39 PRK02362 ski2-like helicase; P 100.0 8.1E-29 1.8E-33 247.3 19.9 187 36-251 2-189 (737)
40 PRK00254 ski2-like helicase; P 100.0 2.5E-28 5.4E-33 243.2 20.8 185 36-251 2-187 (720)
41 PRK13767 ATP-dependent helicas 100.0 6.9E-28 1.5E-32 243.3 20.6 190 42-244 18-219 (876)
42 TIGR02621 cas3_GSU0051 CRISPR- 100.0 5E-27 1.1E-31 230.0 21.4 197 47-267 5-240 (844)
43 KOG0344 ATP-dependent RNA heli 100.0 4.2E-28 9.1E-33 223.3 11.6 220 35-270 132-359 (593)
44 COG1201 Lhr Lhr-like helicases 99.9 9.2E-27 2E-31 227.1 20.1 203 42-261 8-213 (814)
45 PLN03137 ATP-dependent DNA hel 99.9 3.8E-26 8.1E-31 227.4 22.5 214 33-281 433-662 (1195)
46 PRK09401 reverse gyrase; Revie 99.9 4.7E-26 1E-30 233.4 23.3 205 45-266 68-300 (1176)
47 PRK01172 ski2-like helicase; P 99.9 2.4E-26 5.2E-31 227.8 20.4 186 36-251 2-187 (674)
48 TIGR00614 recQ_fam ATP-depende 99.9 1.8E-26 4E-31 219.5 18.3 184 50-263 3-195 (470)
49 TIGR00580 mfd transcription-re 99.9 6E-26 1.3E-30 227.7 19.8 223 5-265 395-632 (926)
50 PRK14701 reverse gyrase; Provi 99.9 4.4E-25 9.5E-30 230.9 23.1 209 43-266 65-301 (1638)
51 PRK10689 transcription-repair 99.9 7.3E-25 1.6E-29 224.3 22.0 223 4-266 543-782 (1147)
52 TIGR01054 rgy reverse gyrase. 99.9 2E-24 4.3E-29 221.8 23.6 207 43-266 64-298 (1171)
53 PRK11057 ATP-dependent DNA hel 99.9 1.2E-24 2.5E-29 212.7 20.7 191 40-261 7-205 (607)
54 TIGR01389 recQ ATP-dependent D 99.9 9.7E-25 2.1E-29 213.4 18.8 183 48-261 3-193 (591)
55 COG1205 Distinct helicase fami 99.9 7E-24 1.5E-28 211.6 21.4 210 42-269 55-268 (851)
56 PRK10917 ATP-dependent DNA hel 99.9 3E-23 6.4E-28 205.0 22.4 181 43-260 247-437 (681)
57 KOG0349 Putative DEAD-box RNA 99.9 4.3E-24 9.3E-29 190.3 10.6 160 110-279 286-448 (725)
58 PRK09751 putative ATP-dependen 99.9 1.5E-22 3.3E-27 208.9 19.5 172 78-261 1-188 (1490)
59 TIGR00643 recG ATP-dependent D 99.9 5.9E-22 1.3E-26 194.5 21.8 172 44-249 222-403 (630)
60 KOG0952 DNA/RNA helicase MER3/ 99.9 2.8E-23 6.1E-28 201.5 11.8 221 42-279 97-322 (1230)
61 smart00487 DEXDc DEAD-like hel 99.9 2.8E-21 6.1E-26 162.0 22.5 188 53-264 3-192 (201)
62 COG1204 Superfamily II helicas 99.9 1.8E-22 3.9E-27 199.0 16.8 190 41-258 15-205 (766)
63 PRK12899 secA preprotein trans 99.9 2.9E-22 6.3E-27 196.3 16.0 151 37-200 64-229 (970)
64 PHA02653 RNA helicase NPH-II; 99.9 3.7E-21 8E-26 187.4 16.7 175 61-264 167-352 (675)
65 PHA02558 uvsW UvsW helicase; P 99.8 3.4E-20 7.3E-25 177.7 17.1 151 57-246 113-263 (501)
66 COG0514 RecQ Superfamily II DN 99.8 2.6E-20 5.6E-25 176.2 15.6 200 46-281 5-212 (590)
67 TIGR03158 cas3_cyano CRISPR-as 99.8 2.5E-19 5.5E-24 164.6 18.8 171 62-260 1-211 (357)
68 COG1202 Superfamily II helicas 99.8 8.7E-20 1.9E-24 168.0 14.1 200 35-259 194-398 (830)
69 TIGR01587 cas3_core CRISPR-ass 99.8 6.9E-20 1.5E-24 169.0 12.9 156 75-256 1-179 (358)
70 TIGR01970 DEAH_box_HrpB ATP-de 99.8 5.2E-19 1.1E-23 176.2 19.5 168 63-265 7-176 (819)
71 PRK11664 ATP-dependent RNA hel 99.8 1.2E-18 2.6E-23 173.9 18.5 167 64-265 11-179 (812)
72 COG4581 Superfamily II RNA hel 99.8 3.6E-18 7.9E-23 169.7 17.3 180 52-266 114-296 (1041)
73 PRK13766 Hef nuclease; Provisi 99.8 9E-18 2E-22 169.5 20.1 163 56-245 13-175 (773)
74 KOG0354 DEAD-box like helicase 99.8 2.8E-18 6E-23 164.7 14.9 183 42-251 47-230 (746)
75 PRK09200 preprotein translocas 99.8 3.5E-18 7.6E-23 167.9 15.5 140 46-199 67-212 (790)
76 PRK05580 primosome assembly pr 99.8 1E-17 2.2E-22 165.3 18.8 159 58-250 144-312 (679)
77 TIGR00963 secA preprotein tran 99.8 3.5E-18 7.6E-23 165.7 14.5 140 46-200 45-190 (745)
78 PRK12898 secA preprotein trans 99.8 5.7E-18 1.2E-22 163.2 15.4 137 48-199 94-255 (656)
79 KOG0352 ATP-dependent DNA heli 99.8 5E-18 1.1E-22 151.6 13.2 188 44-263 5-209 (641)
80 COG1111 MPH1 ERCC4-like helica 99.8 4.7E-17 1E-21 148.6 19.0 182 57-265 14-198 (542)
81 TIGR03714 secA2 accessory Sec 99.8 1.2E-17 2.6E-22 162.9 15.5 141 47-200 60-209 (762)
82 cd00046 DEXDc DEAD-like helica 99.7 1.2E-16 2.6E-21 126.2 16.8 144 74-242 1-144 (144)
83 KOG0351 ATP-dependent DNA heli 99.7 1.3E-17 2.9E-22 166.2 13.1 203 45-282 251-467 (941)
84 PRK13104 secA preprotein trans 99.7 3E-17 6.5E-22 161.5 15.3 136 49-199 74-215 (896)
85 KOG0951 RNA helicase BRR2, DEA 99.7 1.7E-17 3.7E-22 163.8 10.5 227 40-283 294-524 (1674)
86 PF04851 ResIII: Type III rest 99.7 1.6E-16 3.4E-21 132.2 12.7 154 58-243 3-183 (184)
87 KOG0947 Cytoplasmic exosomal R 99.7 1E-16 2.3E-21 154.9 11.9 164 50-252 290-453 (1248)
88 PRK09694 helicase Cas3; Provis 99.7 7.6E-16 1.7E-20 153.9 17.2 174 54-249 282-487 (878)
89 KOG0353 ATP-dependent DNA heli 99.7 3E-16 6.5E-21 138.5 12.5 186 35-254 71-272 (695)
90 PRK12904 preprotein translocas 99.6 3.7E-15 8.1E-20 146.5 14.1 138 47-199 71-214 (830)
91 KOG0948 Nuclear exosomal RNA h 99.6 2.6E-15 5.5E-20 142.3 11.2 170 59-266 130-302 (1041)
92 COG1061 SSL2 DNA or RNA helica 99.6 3.7E-15 8E-20 140.6 11.7 148 58-246 36-187 (442)
93 TIGR00595 priA primosomal prot 99.6 4.2E-15 9E-20 142.0 11.0 137 77-250 1-147 (505)
94 COG1200 RecG RecG-like helicas 99.6 6.1E-14 1.3E-18 133.3 18.4 175 39-249 244-428 (677)
95 COG1197 Mfd Transcription-repa 99.6 4.1E-14 8.9E-19 141.4 17.0 225 5-266 538-776 (1139)
96 PRK11131 ATP-dependent RNA hel 99.6 7.9E-14 1.7E-18 142.8 18.0 164 64-265 80-248 (1294)
97 TIGR00603 rad25 DNA repair hel 99.6 4.8E-14 1E-18 137.8 14.0 150 58-245 255-414 (732)
98 PRK13107 preprotein translocas 99.6 4.4E-14 9.5E-19 139.1 13.4 137 49-200 74-216 (908)
99 TIGR01407 dinG_rel DnaQ family 99.5 3.2E-13 7E-18 137.2 17.7 83 42-135 231-318 (850)
100 TIGR01967 DEAH_box_HrpA ATP-de 99.5 1.3E-12 2.8E-17 134.4 17.9 177 54-265 60-241 (1283)
101 PRK11448 hsdR type I restricti 99.5 1.1E-12 2.4E-17 135.0 14.9 161 58-245 413-597 (1123)
102 PRK07246 bifunctional ATP-depe 99.4 3.1E-12 6.7E-17 128.8 16.4 132 55-200 243-450 (820)
103 TIGR03117 cas_csf4 CRISPR-asso 99.4 3E-12 6.4E-17 124.1 15.2 62 66-134 9-70 (636)
104 COG1110 Reverse gyrase [DNA re 99.4 7.3E-12 1.6E-16 123.0 17.0 157 44-215 69-230 (1187)
105 KOG0950 DNA polymerase theta/e 99.4 2.3E-12 4.9E-17 125.7 11.4 181 41-244 206-389 (1008)
106 TIGR00348 hsdR type I site-spe 99.4 7.5E-12 1.6E-16 123.8 14.7 152 59-243 239-403 (667)
107 KOG0949 Predicted helicase, DE 99.3 4.1E-12 8.8E-17 123.9 10.4 164 55-245 509-674 (1330)
108 smart00489 DEXDc3 DEAD-like he 99.3 2.5E-11 5.5E-16 108.3 14.0 76 54-133 5-84 (289)
109 smart00488 DEXDc2 DEAD-like he 99.3 2.5E-11 5.5E-16 108.3 14.0 76 54-133 5-84 (289)
110 COG4096 HsdR Type I site-speci 99.3 1.4E-11 3.1E-16 119.1 10.7 139 57-216 164-311 (875)
111 COG1198 PriA Primosomal protei 99.3 2.5E-11 5.4E-16 118.7 11.3 159 58-250 198-367 (730)
112 COG1203 CRISPR-associated heli 99.3 5.1E-11 1.1E-15 119.1 13.5 186 58-263 195-401 (733)
113 PRK13103 secA preprotein trans 99.3 6.2E-11 1.3E-15 117.2 13.4 136 49-199 74-215 (913)
114 COG4098 comFA Superfamily II D 99.3 2.1E-10 4.5E-15 100.8 15.1 152 58-251 97-252 (441)
115 PRK08074 bifunctional ATP-depe 99.2 1.7E-10 3.6E-15 118.2 16.1 65 55-128 255-323 (928)
116 PF07652 Flavi_DEAD: Flaviviru 99.2 3.4E-11 7.5E-16 94.1 7.3 140 72-248 3-142 (148)
117 PRK12906 secA preprotein trans 99.2 1.7E-10 3.8E-15 113.5 12.9 139 46-199 69-213 (796)
118 PF07517 SecA_DEAD: SecA DEAD- 99.2 6.9E-10 1.5E-14 96.9 15.2 137 48-199 68-210 (266)
119 PRK12326 preprotein translocas 99.2 2.9E-10 6.3E-15 110.1 13.6 138 47-199 68-211 (764)
120 PRK12902 secA preprotein trans 99.1 1.8E-09 3.9E-14 106.5 14.1 138 47-199 75-218 (939)
121 PF00176 SNF2_N: SNF2 family N 99.1 2.3E-09 4.9E-14 96.1 13.0 156 62-242 1-172 (299)
122 PRK11747 dinG ATP-dependent DN 99.1 4E-09 8.6E-14 105.0 15.7 65 55-128 23-96 (697)
123 CHL00122 secA preprotein trans 99.1 1.2E-09 2.7E-14 107.7 11.8 138 47-199 66-209 (870)
124 PLN03142 Probable chromatin-re 99.0 1.2E-08 2.5E-13 104.1 17.6 162 58-250 169-338 (1033)
125 COG1643 HrpA HrpA-like helicas 99.0 1.4E-08 3.1E-13 101.1 16.1 166 61-257 53-218 (845)
126 PRK04914 ATP-dependent helicas 99.0 7.6E-09 1.7E-13 104.9 14.3 175 58-260 152-335 (956)
127 KOG0920 ATP-dependent RNA heli 99.0 3.1E-08 6.7E-13 98.7 17.7 174 59-265 174-349 (924)
128 KOG0951 RNA helicase BRR2, DEA 98.9 3.5E-09 7.6E-14 106.1 8.8 156 58-249 1143-1305(1674)
129 COG1199 DinG Rad3-related DNA 98.9 1.7E-08 3.7E-13 100.5 13.6 74 52-133 9-86 (654)
130 TIGR00604 rad3 DNA repair heli 98.8 2.9E-08 6.4E-13 99.3 11.7 76 53-134 5-84 (705)
131 PRK15483 type III restriction- 98.8 1.6E-07 3.4E-12 94.5 15.3 145 74-244 60-240 (986)
132 PRK14873 primosome assembly pr 98.8 3.9E-08 8.5E-13 96.7 10.4 142 77-251 164-312 (665)
133 TIGR02562 cas3_yersinia CRISPR 98.8 1E-07 2.2E-12 95.8 13.2 168 58-248 408-640 (1110)
134 PRK12903 secA preprotein trans 98.7 1.3E-07 2.8E-12 93.4 13.2 138 47-199 68-211 (925)
135 KOG1123 RNA polymerase II tran 98.7 1.5E-08 3.4E-13 93.1 4.3 156 57-250 301-466 (776)
136 KOG0922 DEAH-box RNA helicase 98.7 8.6E-07 1.9E-11 84.6 15.4 149 64-243 57-206 (674)
137 KOG0385 Chromatin remodeling c 98.6 1.5E-06 3.2E-11 84.0 15.1 156 58-244 167-329 (971)
138 PF13086 AAA_11: AAA domain; P 98.5 6E-07 1.3E-11 77.2 9.2 73 59-132 2-75 (236)
139 COG0610 Type I site-specific r 98.5 3.2E-06 6.9E-11 86.9 15.0 139 74-243 274-414 (962)
140 PF13604 AAA_30: AAA domain; P 98.4 4.7E-06 1E-10 70.2 13.0 63 58-129 1-65 (196)
141 PF02562 PhoH: PhoH-like prote 98.4 1.6E-06 3.4E-11 73.0 10.0 136 57-216 3-145 (205)
142 KOG2340 Uncharacterized conser 98.4 1E-06 2.2E-11 81.9 8.7 201 57-258 215-495 (698)
143 KOG0389 SNF2 family DNA-depend 98.4 1.8E-06 3.9E-11 83.6 10.6 168 55-252 397-573 (941)
144 PRK12900 secA preprotein trans 98.4 1.6E-06 3.5E-11 86.9 10.3 128 58-199 138-271 (1025)
145 KOG0926 DEAH-box RNA helicase 98.4 3.7E-06 8E-11 81.7 12.2 192 56-268 242-451 (1172)
146 PF06862 DUF1253: Protein of u 98.3 8.7E-06 1.9E-10 75.9 12.7 149 109-258 36-241 (442)
147 KOG0387 Transcription-coupled 98.3 6.4E-06 1.4E-10 80.0 11.8 162 58-252 205-386 (923)
148 KOG4439 RNA polymerase II tran 98.3 1.8E-06 3.9E-11 82.7 7.9 141 58-201 325-478 (901)
149 PRK12901 secA preprotein trans 98.3 2.3E-06 4.9E-11 86.0 8.8 129 58-199 169-303 (1112)
150 KOG0390 DNA repair protein, SN 98.3 2.1E-05 4.6E-10 77.6 15.1 183 58-265 238-439 (776)
151 COG4889 Predicted helicase [Ge 98.3 5.7E-06 1.2E-10 81.2 10.2 149 36-200 141-318 (1518)
152 KOG0924 mRNA splicing factor A 98.2 2.5E-05 5.5E-10 74.9 13.4 167 58-257 356-523 (1042)
153 PF02399 Herpes_ori_bp: Origin 98.2 1.9E-05 4.2E-10 77.8 12.9 155 75-264 51-213 (824)
154 KOG0925 mRNA splicing factor A 98.1 7.8E-05 1.7E-09 69.1 14.2 179 34-243 24-202 (699)
155 KOG0923 mRNA splicing factor A 98.1 5E-05 1.1E-09 72.7 13.1 168 60-259 267-435 (902)
156 PRK10536 hypothetical protein; 98.1 0.00016 3.5E-09 62.8 15.3 139 54-216 55-202 (262)
157 KOG0392 SNF2 family DNA-depend 98.1 4.7E-05 1E-09 77.2 13.1 170 59-253 976-1150(1549)
158 KOG1000 Chromatin remodeling p 98.1 3.2E-05 7E-10 71.7 10.7 151 57-242 197-348 (689)
159 PF12340 DUF3638: Protein of u 98.1 0.00012 2.6E-09 62.4 13.4 155 35-201 3-187 (229)
160 PRK10875 recD exonuclease V su 98.1 0.00012 2.6E-09 71.8 14.9 148 45-216 138-291 (615)
161 PF09848 DUF2075: Uncharacteri 98.1 3.1E-05 6.7E-10 71.4 10.2 108 75-213 3-117 (352)
162 KOG1803 DNA helicase [Replicat 98.0 1.9E-05 4.1E-10 74.9 8.8 64 58-130 185-249 (649)
163 TIGR01447 recD exodeoxyribonuc 98.0 0.00018 3.9E-09 70.3 14.8 134 60-216 147-285 (586)
164 PF13872 AAA_34: P-loop contai 98.0 6.6E-05 1.4E-09 66.3 10.4 162 59-250 38-228 (303)
165 KOG0952 DNA/RNA helicase MER3/ 98.0 5.5E-06 1.2E-10 82.6 3.8 143 58-212 927-1071(1230)
166 KOG1002 Nucleotide excision re 98.0 6.2E-05 1.3E-09 69.8 10.0 129 58-201 184-331 (791)
167 COG3587 Restriction endonuclea 97.9 5.8E-05 1.3E-09 74.2 9.8 146 75-248 76-248 (985)
168 KOG1132 Helicase of the DEAD s 97.9 9E-05 1.9E-09 73.1 11.0 81 53-134 17-134 (945)
169 KOG0384 Chromodomain-helicase 97.9 8.1E-05 1.8E-09 75.6 10.6 161 57-252 369-546 (1373)
170 KOG1802 RNA helicase nonsense 97.9 0.00013 2.8E-09 69.9 11.2 75 52-134 404-478 (935)
171 TIGR01448 recD_rel helicase, p 97.8 0.00044 9.6E-09 69.5 14.8 67 52-126 318-384 (720)
172 PF13245 AAA_19: Part of AAA d 97.8 0.00012 2.6E-09 51.6 7.2 60 66-130 2-62 (76)
173 KOG0388 SNF2 family DNA-depend 97.7 0.00029 6.2E-09 68.1 11.0 156 59-245 568-736 (1185)
174 PF00580 UvrD-helicase: UvrD/R 97.7 0.00017 3.8E-09 64.8 8.8 124 59-196 1-125 (315)
175 COG0653 SecA Preprotein transl 97.7 0.00034 7.4E-09 69.6 10.8 132 53-199 76-213 (822)
176 KOG4150 Predicted ATP-dependen 97.6 5.6E-05 1.2E-09 71.2 4.7 200 48-264 276-484 (1034)
177 KOG0391 SNF2 family DNA-depend 97.6 0.0004 8.6E-09 70.5 10.7 141 59-213 616-763 (1958)
178 COG1875 NYN ribonuclease and A 97.6 0.00055 1.2E-08 61.7 9.9 67 52-124 222-290 (436)
179 PRK13889 conjugal transfer rel 97.6 0.0014 2.9E-08 67.6 13.5 62 55-126 344-406 (988)
180 PF13401 AAA_22: AAA domain; P 97.5 0.00072 1.6E-08 52.6 8.6 20 72-91 3-22 (131)
181 COG0556 UvrB Helicase subunit 97.5 0.00022 4.7E-09 67.0 6.1 65 59-135 13-82 (663)
182 KOG1805 DNA replication helica 97.3 0.00096 2.1E-08 66.7 9.0 141 41-200 657-810 (1100)
183 TIGR00376 DNA helicase, putati 97.3 0.001 2.2E-08 65.9 8.9 66 58-132 157-223 (637)
184 KOG0989 Replication factor C, 97.3 0.0016 3.4E-08 57.5 8.8 46 183-244 126-171 (346)
185 PF05970 PIF1: PIF1-like helic 97.3 0.0019 4.1E-08 59.8 9.9 59 59-126 2-66 (364)
186 PRK04296 thymidine kinase; Pro 97.2 0.00097 2.1E-08 55.9 7.0 37 73-118 2-38 (190)
187 TIGR02768 TraA_Ti Ti-type conj 97.2 0.0062 1.3E-07 61.6 13.7 60 58-126 352-412 (744)
188 PRK06526 transposase; Provisio 97.2 0.0049 1.1E-07 54.0 11.2 22 70-91 95-116 (254)
189 PRK13826 Dtr system oriT relax 97.2 0.015 3.2E-07 60.6 15.9 75 41-126 366-441 (1102)
190 PRK08181 transposase; Validate 97.2 0.02 4.3E-07 50.6 14.6 20 71-90 104-123 (269)
191 cd00009 AAA The AAA+ (ATPases 97.2 0.0079 1.7E-07 46.9 11.1 18 73-90 19-36 (151)
192 PF14617 CMS1: U3-containing 9 97.2 0.0014 3.1E-08 56.9 7.2 86 108-196 124-211 (252)
193 PHA02533 17 large terminase pr 97.1 0.0072 1.6E-07 58.6 12.6 137 58-215 59-196 (534)
194 PRK12723 flagellar biosynthesi 97.1 0.013 2.9E-07 54.4 13.2 132 74-253 175-309 (388)
195 cd01120 RecA-like_NTPases RecA 97.1 0.029 6.3E-07 44.8 13.8 38 76-122 2-39 (165)
196 COG0553 HepA Superfamily II DN 97.0 0.0069 1.5E-07 62.4 11.9 137 57-201 337-487 (866)
197 KOG0953 Mitochondrial RNA heli 96.8 0.0017 3.6E-08 61.5 4.9 102 74-204 192-293 (700)
198 smart00382 AAA ATPases associa 96.8 0.0042 9E-08 48.0 6.4 18 73-90 2-19 (148)
199 KOG0386 Chromatin remodeling c 96.8 0.0024 5.3E-08 64.1 5.9 130 58-200 394-529 (1157)
200 cd01124 KaiC KaiC is a circadi 96.8 0.024 5.1E-07 46.9 11.2 48 76-133 2-49 (187)
201 KOG1131 RNA polymerase II tran 96.8 0.019 4E-07 54.2 11.2 76 54-134 12-91 (755)
202 PRK14974 cell division protein 96.7 0.052 1.1E-06 49.5 13.8 54 186-254 222-276 (336)
203 PRK11889 flhF flagellar biosyn 96.7 0.039 8.5E-07 51.2 12.9 21 74-94 242-262 (436)
204 PRK14722 flhF flagellar biosyn 96.7 0.059 1.3E-06 49.8 14.1 128 36-172 82-227 (374)
205 PRK06921 hypothetical protein; 96.7 0.047 1E-06 48.2 12.9 45 72-125 116-160 (266)
206 PRK08116 hypothetical protein; 96.7 0.069 1.5E-06 47.2 14.0 25 75-100 116-140 (268)
207 PHA03368 DNA packaging termina 96.6 0.075 1.6E-06 52.2 14.3 161 44-244 229-392 (738)
208 PRK08727 hypothetical protein; 96.5 0.028 6.1E-07 48.6 10.4 16 75-90 43-58 (233)
209 PF00448 SRP54: SRP54-type pro 96.5 0.11 2.5E-06 43.6 13.8 51 186-251 83-134 (196)
210 PRK07952 DNA replication prote 96.5 0.076 1.7E-06 46.2 12.8 26 74-100 100-125 (244)
211 TIGR02785 addA_Gpos recombinat 96.5 0.024 5.1E-07 60.7 11.5 124 59-197 2-126 (1232)
212 PF03354 Terminase_1: Phage Te 96.5 0.017 3.7E-07 55.5 9.5 72 61-137 1-81 (477)
213 PRK05642 DNA replication initi 96.5 0.032 6.9E-07 48.3 10.4 31 186-216 97-128 (234)
214 PRK14712 conjugal transfer nic 96.5 0.07 1.5E-06 57.7 14.6 62 58-126 835-900 (1623)
215 PRK00149 dnaA chromosomal repl 96.4 0.038 8.3E-07 52.7 11.6 43 75-125 150-192 (450)
216 PRK14087 dnaA chromosomal repl 96.4 0.04 8.6E-07 52.5 11.6 47 75-129 143-189 (450)
217 PRK06893 DNA replication initi 96.4 0.023 4.9E-07 49.0 9.2 47 186-246 91-138 (229)
218 PRK10919 ATP-dependent DNA hel 96.4 0.011 2.3E-07 59.3 8.1 70 58-134 2-71 (672)
219 COG3421 Uncharacterized protei 96.4 0.0047 1E-07 59.1 4.7 115 78-201 2-127 (812)
220 TIGR00631 uvrb excinuclease AB 96.3 0.014 3E-07 58.1 8.0 66 58-135 9-79 (655)
221 PRK06835 DNA replication prote 96.3 0.18 4E-06 45.9 14.7 45 72-126 182-226 (329)
222 PRK12377 putative replication 96.3 0.09 1.9E-06 45.9 12.2 45 73-127 101-145 (248)
223 TIGR02760 TraI_TIGR conjugativ 96.3 0.076 1.7E-06 59.2 14.1 62 58-128 429-492 (1960)
224 TIGR03420 DnaA_homol_Hda DnaA 96.2 0.045 9.7E-07 46.8 9.9 20 72-91 37-56 (226)
225 PRK11331 5-methylcytosine-spec 96.2 0.031 6.7E-07 52.7 9.4 33 59-91 180-212 (459)
226 PRK05298 excinuclease ABC subu 96.2 0.03 6.4E-07 55.9 9.8 68 55-135 10-82 (652)
227 TIGR01075 uvrD DNA helicase II 96.2 0.016 3.4E-07 58.6 7.8 72 57-135 3-74 (715)
228 TIGR00362 DnaA chromosomal rep 96.2 0.058 1.3E-06 50.7 11.2 36 75-117 138-173 (405)
229 PRK11054 helD DNA helicase IV; 96.2 0.035 7.5E-07 55.6 10.0 73 55-134 193-265 (684)
230 PF00308 Bac_DnaA: Bacterial d 96.2 0.044 9.5E-07 47.0 9.4 109 75-247 36-145 (219)
231 PRK13709 conjugal transfer nic 96.2 0.074 1.6E-06 58.2 12.9 64 58-126 967-1032(1747)
232 PHA03333 putative ATPase subun 96.1 0.21 4.5E-06 49.4 14.7 72 58-137 169-243 (752)
233 PHA02544 44 clamp loader, smal 96.1 0.043 9.3E-07 49.6 9.7 31 186-216 100-130 (316)
234 COG3973 Superfamily I DNA and 96.1 0.037 8E-07 53.3 9.3 95 38-135 185-285 (747)
235 PRK11773 uvrD DNA-dependent he 96.1 0.019 4.1E-07 58.1 7.9 71 58-135 9-79 (721)
236 PRK05703 flhF flagellar biosyn 96.1 0.14 3E-06 48.4 13.2 19 73-91 221-239 (424)
237 PF05621 TniB: Bacterial TniB 96.1 0.16 3.5E-06 45.3 12.7 111 74-216 62-177 (302)
238 PRK05707 DNA polymerase III su 96.1 0.063 1.4E-06 48.9 10.5 41 59-100 4-48 (328)
239 PHA03372 DNA packaging termina 96.0 0.28 6.1E-06 47.7 14.8 144 45-217 178-326 (668)
240 PRK14088 dnaA chromosomal repl 96.0 0.11 2.4E-06 49.3 12.3 50 186-249 194-244 (440)
241 PTZ00112 origin recognition co 96.0 0.089 1.9E-06 53.4 11.7 23 76-99 784-806 (1164)
242 TIGR02881 spore_V_K stage V sp 96.0 0.12 2.6E-06 45.5 11.6 18 74-91 43-60 (261)
243 TIGR02760 TraI_TIGR conjugativ 96.0 0.13 2.7E-06 57.5 13.9 61 58-126 1019-1084(1960)
244 PF05127 Helicase_RecD: Helica 95.9 0.0033 7.2E-08 51.7 1.4 124 77-244 1-125 (177)
245 COG1474 CDC6 Cdc6-related prot 95.9 0.4 8.6E-06 44.4 15.1 25 75-100 44-68 (366)
246 PRK08084 DNA replication initi 95.9 0.19 4.1E-06 43.5 12.3 18 73-90 45-62 (235)
247 cd01122 GP4d_helicase GP4d_hel 95.9 0.068 1.5E-06 47.2 9.7 55 69-132 26-80 (271)
248 TIGR01074 rep ATP-dependent DN 95.9 0.033 7.2E-07 55.9 8.5 69 59-134 2-70 (664)
249 PRK08769 DNA polymerase III su 95.9 0.17 3.6E-06 45.9 12.1 44 56-100 2-52 (319)
250 COG1444 Predicted P-loop ATPas 95.9 0.12 2.5E-06 51.7 11.9 145 55-244 211-358 (758)
251 PF00004 AAA: ATPase family as 95.8 0.13 2.9E-06 39.5 9.9 15 76-90 1-15 (132)
252 PRK12726 flagellar biosynthesi 95.8 0.2 4.4E-06 46.3 12.2 20 73-92 206-225 (407)
253 cd00561 CobA_CobO_BtuR ATP:cor 95.8 0.34 7.3E-06 39.2 12.3 53 185-252 94-148 (159)
254 PLN03025 replication factor C 95.8 0.14 3E-06 46.6 11.2 29 186-215 99-127 (319)
255 PRK13342 recombination factor 95.7 0.15 3.2E-06 48.1 11.8 17 75-91 38-54 (413)
256 PRK12422 chromosomal replicati 95.7 0.18 4E-06 47.9 12.3 50 186-249 202-252 (445)
257 COG2805 PilT Tfp pilus assembl 95.7 0.036 7.8E-07 49.1 6.9 27 76-103 128-154 (353)
258 PRK08903 DnaA regulatory inact 95.7 0.095 2.1E-06 45.0 9.5 19 72-90 41-59 (227)
259 KOG0991 Replication factor C, 95.7 0.05 1.1E-06 46.5 7.3 31 185-216 112-142 (333)
260 CHL00181 cbbX CbbX; Provisiona 95.7 0.12 2.5E-06 46.3 10.2 20 73-92 59-78 (287)
261 PRK12727 flagellar biosynthesi 95.6 0.62 1.3E-05 45.0 15.4 55 37-91 301-368 (559)
262 KOG1133 Helicase of the DEAD s 95.6 0.022 4.7E-07 55.5 5.5 46 54-100 12-61 (821)
263 TIGR01547 phage_term_2 phage t 95.6 0.11 2.3E-06 48.8 10.2 146 76-254 4-152 (396)
264 PRK00411 cdc6 cell division co 95.6 0.27 5.8E-06 45.9 12.9 24 74-98 56-79 (394)
265 PRK04195 replication factor C 95.5 0.16 3.6E-06 48.8 11.3 45 33-90 9-56 (482)
266 PRK09183 transposase/IS protei 95.5 0.35 7.5E-06 42.6 12.5 22 70-91 99-120 (259)
267 PRK05986 cob(I)alamin adenolsy 95.5 0.14 3.1E-06 42.6 9.3 140 72-252 21-168 (191)
268 PF06745 KaiC: KaiC; InterPro 95.5 0.11 2.4E-06 44.5 9.1 53 72-133 18-70 (226)
269 PRK08533 flagellar accessory p 95.4 0.3 6.6E-06 42.1 11.6 53 71-133 22-74 (230)
270 TIGR01073 pcrA ATP-dependent D 95.4 0.055 1.2E-06 54.9 8.0 72 57-135 3-74 (726)
271 PRK11823 DNA repair protein Ra 95.3 0.17 3.8E-06 48.1 10.5 51 73-133 80-130 (446)
272 PF13177 DNA_pol3_delta2: DNA 95.2 0.2 4.3E-06 40.7 9.4 30 185-215 101-130 (162)
273 TIGR00708 cobA cob(I)alamin ad 95.2 0.17 3.8E-06 41.4 9.0 53 185-252 96-150 (173)
274 PRK13341 recombination factor 95.2 0.24 5.3E-06 49.9 11.8 16 75-90 54-69 (725)
275 PRK12402 replication factor C 95.2 0.24 5.2E-06 45.1 11.0 17 75-91 38-54 (337)
276 COG0470 HolB ATPase involved i 95.2 0.17 3.8E-06 45.6 10.0 28 72-100 22-50 (325)
277 PRK14086 dnaA chromosomal repl 95.2 0.22 4.7E-06 49.0 10.9 48 186-247 377-425 (617)
278 PRK13833 conjugal transfer pro 95.2 0.074 1.6E-06 48.3 7.3 58 59-123 129-187 (323)
279 PRK13894 conjugal transfer ATP 95.1 0.07 1.5E-06 48.4 7.1 58 59-123 133-191 (319)
280 COG1419 FlhF Flagellar GTP-bin 95.1 0.12 2.7E-06 47.7 8.6 58 73-138 203-260 (407)
281 COG4962 CpaF Flp pilus assembl 95.1 0.12 2.6E-06 46.8 8.3 79 32-126 137-216 (355)
282 TIGR02880 cbbX_cfxQ probable R 95.1 0.17 3.7E-06 45.2 9.4 18 73-90 58-75 (284)
283 PRK08939 primosomal protein Dn 95.0 0.64 1.4E-05 42.0 12.9 26 73-99 156-181 (306)
284 TIGR00596 rad1 DNA repair prot 95.0 0.12 2.6E-06 52.6 9.0 90 158-263 4-99 (814)
285 KOG1001 Helicase-like transcri 95.0 0.075 1.6E-06 52.9 7.2 115 75-201 154-269 (674)
286 PF13173 AAA_14: AAA domain 94.9 0.55 1.2E-05 36.3 10.9 27 186-214 61-87 (128)
287 TIGR00064 ftsY signal recognit 94.9 0.79 1.7E-05 40.6 13.0 19 74-92 73-91 (272)
288 PF05876 Terminase_GpA: Phage 94.9 0.098 2.1E-06 51.2 7.8 126 58-200 16-148 (557)
289 PRK06731 flhF flagellar biosyn 94.9 0.76 1.6E-05 40.6 12.7 21 73-93 75-95 (270)
290 cd01121 Sms Sms (bacterial rad 94.9 0.4 8.8E-06 44.5 11.4 51 73-133 82-132 (372)
291 PF01695 IstB_IS21: IstB-like 94.9 0.077 1.7E-06 43.9 6.0 46 71-126 45-90 (178)
292 TIGR03499 FlhF flagellar biosy 94.8 0.4 8.7E-06 42.7 11.0 54 38-91 144-212 (282)
293 KOG0921 Dosage compensation co 94.8 0.14 3.1E-06 51.5 8.6 117 67-197 387-504 (1282)
294 TIGR02688 conserved hypothetic 94.8 0.34 7.4E-06 45.4 10.6 46 45-91 174-227 (449)
295 TIGR03015 pepcterm_ATPase puta 94.8 0.64 1.4E-05 40.7 12.2 33 59-91 24-61 (269)
296 PRK06645 DNA polymerase III su 94.8 1.4 3E-05 42.7 15.1 18 75-92 45-62 (507)
297 TIGR03881 KaiC_arch_4 KaiC dom 94.7 0.51 1.1E-05 40.4 11.1 52 72-133 19-70 (229)
298 PRK11034 clpA ATP-dependent Cl 94.7 0.4 8.6E-06 48.7 11.6 18 73-90 207-224 (758)
299 PRK14956 DNA polymerase III su 94.6 0.41 9E-06 45.7 11.0 17 76-92 43-59 (484)
300 PRK05563 DNA polymerase III su 94.6 1.5 3.3E-05 43.1 15.2 19 75-93 40-58 (559)
301 PRK00771 signal recognition pa 94.6 0.86 1.9E-05 43.2 13.0 18 75-92 97-114 (437)
302 COG2256 MGS1 ATPase related to 94.6 0.24 5.2E-06 45.7 8.8 18 75-92 50-67 (436)
303 TIGR02928 orc1/cdc6 family rep 94.5 0.29 6.2E-06 45.2 9.7 25 74-99 41-65 (365)
304 KOG0737 AAA+-type ATPase [Post 94.5 0.27 5.8E-06 44.8 8.9 72 188-266 188-264 (386)
305 PRK06995 flhF flagellar biosyn 94.5 0.48 1E-05 45.4 11.2 129 73-216 256-390 (484)
306 PRK14958 DNA polymerase III su 94.5 0.4 8.6E-06 46.5 10.8 17 76-92 41-57 (509)
307 PF05729 NACHT: NACHT domain 94.5 1.4 3E-05 35.0 12.6 24 76-100 3-26 (166)
308 PRK07003 DNA polymerase III su 94.4 0.27 5.9E-06 49.3 9.6 17 76-92 41-57 (830)
309 KOG0741 AAA+-type ATPase [Post 94.4 0.19 4.2E-06 47.9 7.9 56 32-90 213-273 (744)
310 PRK07764 DNA polymerase III su 94.3 0.46 1E-05 48.7 11.3 19 76-94 40-58 (824)
311 TIGR02782 TrbB_P P-type conjug 94.3 0.29 6.4E-06 44.0 8.9 58 59-123 117-175 (299)
312 PRK08699 DNA polymerase III su 94.3 0.69 1.5E-05 42.1 11.4 39 60-99 3-46 (325)
313 TIGR03878 thermo_KaiC_2 KaiC d 94.3 0.64 1.4E-05 40.9 10.9 38 72-118 35-72 (259)
314 PF14516 AAA_35: AAA-like doma 94.3 0.18 3.9E-06 46.1 7.6 39 61-100 18-57 (331)
315 PRK13851 type IV secretion sys 94.2 0.087 1.9E-06 48.3 5.4 45 69-123 158-202 (344)
316 PRK14960 DNA polymerase III su 94.2 0.28 6.1E-06 48.5 9.1 18 75-92 39-56 (702)
317 PRK06964 DNA polymerase III su 94.1 0.64 1.4E-05 42.6 10.8 41 59-100 2-47 (342)
318 KOG1015 Transcription regulato 94.1 0.42 9.1E-06 48.7 10.1 122 73-200 696-835 (1567)
319 KOG0738 AAA+-type ATPase [Post 94.1 0.91 2E-05 41.9 11.4 73 187-266 305-385 (491)
320 PRK06067 flagellar accessory p 94.1 1.7 3.6E-05 37.4 13.1 51 73-133 25-75 (234)
321 cd00984 DnaB_C DnaB helicase C 94.1 1 2.2E-05 38.8 11.7 39 72-118 12-50 (242)
322 COG2804 PulE Type II secretory 94.1 0.1 2.2E-06 49.6 5.5 40 60-100 243-284 (500)
323 PRK14723 flhF flagellar biosyn 94.0 0.46 9.9E-06 48.0 10.4 20 73-92 185-204 (767)
324 PRK07414 cob(I)yrinic acid a,c 94.0 0.69 1.5E-05 38.1 9.7 52 185-251 114-167 (178)
325 PRK09111 DNA polymerase III su 94.0 0.86 1.9E-05 45.1 12.1 18 75-92 48-65 (598)
326 PRK10867 signal recognition pa 94.0 0.97 2.1E-05 42.8 12.0 17 76-92 103-119 (433)
327 PRK08691 DNA polymerase III su 94.0 0.56 1.2E-05 46.8 10.7 18 75-92 40-57 (709)
328 KOG0742 AAA+-type ATPase [Post 94.0 0.19 4.1E-06 46.5 6.9 17 74-90 385-401 (630)
329 PRK05973 replicative DNA helic 93.9 0.6 1.3E-05 40.4 9.6 55 69-133 60-114 (237)
330 PRK07994 DNA polymerase III su 93.9 1.2 2.7E-05 44.2 12.9 17 76-92 41-57 (647)
331 TIGR01425 SRP54_euk signal rec 93.8 1.1 2.4E-05 42.2 12.0 85 75-172 102-194 (429)
332 TIGR00959 ffh signal recogniti 93.8 1 2.3E-05 42.5 11.7 18 75-92 101-118 (428)
333 PRK14964 DNA polymerase III su 93.7 0.89 1.9E-05 43.7 11.4 18 75-92 37-54 (491)
334 COG0630 VirB11 Type IV secreto 93.7 0.28 6.1E-06 44.4 7.7 76 32-123 107-183 (312)
335 PRK14961 DNA polymerase III su 93.7 0.72 1.6E-05 42.7 10.6 17 76-92 41-57 (363)
336 KOG0298 DEAD box-containing he 93.7 0.22 4.8E-06 51.9 7.5 157 72-251 373-559 (1394)
337 PRK12724 flagellar biosynthesi 93.7 1.8 3.9E-05 40.7 13.0 20 75-94 225-244 (432)
338 PRK00440 rfc replication facto 93.7 1.5 3.3E-05 39.4 12.5 16 75-90 40-55 (319)
339 KOG0739 AAA+-type ATPase [Post 93.6 2 4.4E-05 38.3 12.3 74 186-266 225-302 (439)
340 PRK14949 DNA polymerase III su 93.6 0.58 1.3E-05 47.9 10.3 17 76-92 41-57 (944)
341 COG0593 DnaA ATPase involved i 93.6 0.53 1.2E-05 43.9 9.2 49 186-248 175-224 (408)
342 PRK14962 DNA polymerase III su 93.5 1.5 3.4E-05 42.0 12.6 17 76-92 39-55 (472)
343 TIGR03877 thermo_KaiC_1 KaiC d 93.5 0.17 3.6E-06 43.9 5.7 53 72-134 20-72 (237)
344 COG1484 DnaC DNA replication p 93.5 0.26 5.7E-06 43.2 6.9 49 72-130 104-152 (254)
345 TIGR02237 recomb_radB DNA repa 93.5 2.1 4.4E-05 36.0 12.2 39 72-119 11-49 (209)
346 PF06733 DEAD_2: DEAD_2; Inte 93.5 0.044 9.5E-07 45.1 1.8 45 157-201 115-160 (174)
347 PRK13900 type IV secretion sys 93.4 0.2 4.4E-06 45.7 6.2 44 70-123 157-200 (332)
348 PRK06871 DNA polymerase III su 93.3 1.1 2.5E-05 40.7 10.9 41 59-100 3-50 (325)
349 PRK07993 DNA polymerase III su 93.3 2.5 5.4E-05 38.6 13.2 41 59-100 3-50 (334)
350 PRK14969 DNA polymerase III su 93.2 2.1 4.5E-05 41.8 13.2 17 76-92 41-57 (527)
351 PF03969 AFG1_ATPase: AFG1-lik 93.2 1 2.3E-05 41.6 10.6 112 73-247 62-173 (362)
352 PRK12323 DNA polymerase III su 93.2 0.28 6E-06 48.5 7.0 23 76-99 41-63 (700)
353 PRK07940 DNA polymerase III su 93.2 1.1 2.3E-05 42.1 10.7 18 75-92 38-55 (394)
354 PRK06904 replicative DNA helic 93.1 2.3 5.1E-05 40.8 13.2 152 72-247 220-388 (472)
355 PRK14963 DNA polymerase III su 93.1 1.1 2.3E-05 43.5 10.9 28 185-216 115-142 (504)
356 TIGR01243 CDC48 AAA family ATP 93.1 0.87 1.9E-05 46.3 10.8 55 33-90 173-229 (733)
357 PF03796 DnaB_C: DnaB-like hel 93.1 0.72 1.6E-05 40.4 9.1 130 73-215 19-163 (259)
358 COG2909 MalT ATP-dependent tra 93.0 0.86 1.9E-05 46.0 10.1 44 186-244 129-172 (894)
359 PRK14965 DNA polymerase III su 92.9 2.6 5.6E-05 41.6 13.5 17 76-92 41-57 (576)
360 PRK03992 proteasome-activating 92.9 1.1 2.4E-05 41.9 10.5 53 35-90 128-182 (389)
361 PHA00012 I assembly protein 92.9 1.5 3.2E-05 39.7 10.6 25 76-100 4-28 (361)
362 PRK14952 DNA polymerase III su 92.9 1.1 2.4E-05 44.1 10.8 17 76-92 38-54 (584)
363 PRK14721 flhF flagellar biosyn 92.8 0.85 1.8E-05 43.0 9.4 92 73-173 191-282 (420)
364 COG2109 BtuR ATP:corrinoid ade 92.8 0.95 2.1E-05 37.5 8.5 54 185-253 121-176 (198)
365 PRK10865 protein disaggregatio 92.7 1.3 2.9E-05 45.8 11.7 17 75-91 201-217 (857)
366 PF01637 Arch_ATPase: Archaeal 92.7 0.79 1.7E-05 38.8 8.7 17 73-89 20-36 (234)
367 KOG0732 AAA+-type ATPase conta 92.7 0.28 6.1E-06 50.7 6.5 53 34-90 261-316 (1080)
368 PF02572 CobA_CobO_BtuR: ATP:c 92.7 0.87 1.9E-05 37.3 8.3 53 185-252 95-149 (172)
369 TIGR02639 ClpA ATP-dependent C 92.7 2.1 4.5E-05 43.6 12.8 18 74-91 204-221 (731)
370 TIGR00416 sms DNA repair prote 92.6 1.3 2.8E-05 42.3 10.7 51 73-133 94-144 (454)
371 COG1435 Tdk Thymidine kinase [ 92.6 0.46 9.9E-06 39.6 6.5 106 73-214 4-109 (201)
372 PRK14957 DNA polymerase III su 92.6 1.1 2.4E-05 43.8 10.2 17 76-92 41-57 (546)
373 PRK09354 recA recombinase A; P 92.5 0.56 1.2E-05 43.0 7.7 42 73-123 60-101 (349)
374 PRK09087 hypothetical protein; 92.5 1.2 2.5E-05 38.4 9.3 18 73-90 44-61 (226)
375 TIGR01243 CDC48 AAA family ATP 92.4 1.4 3E-05 44.9 11.2 54 34-90 449-504 (733)
376 TIGR00678 holB DNA polymerase 92.4 1.8 3.9E-05 35.8 10.2 27 185-215 95-121 (188)
377 PF02534 T4SS-DNA_transf: Type 92.4 0.11 2.3E-06 49.9 3.0 49 74-133 45-93 (469)
378 TIGR02655 circ_KaiC circadian 92.3 1.2 2.5E-05 43.1 10.1 60 65-134 250-314 (484)
379 PRK07471 DNA polymerase III su 92.3 4 8.7E-05 37.8 13.2 25 75-100 43-67 (365)
380 KOG0060 Long-chain acyl-CoA tr 92.3 0.24 5.3E-06 47.7 5.2 30 185-214 587-616 (659)
381 PRK05896 DNA polymerase III su 92.3 1.4 3E-05 43.4 10.5 18 75-92 40-57 (605)
382 COG2874 FlaH Predicted ATPases 92.3 3.2 6.9E-05 35.2 11.2 133 74-242 29-167 (235)
383 PRK14948 DNA polymerase III su 92.2 1.6 3.4E-05 43.5 11.0 19 74-92 39-57 (620)
384 TIGR03880 KaiC_arch_3 KaiC dom 92.2 1.7 3.6E-05 37.1 10.0 52 72-133 15-66 (224)
385 TIGR03600 phage_DnaB phage rep 92.2 1.2 2.5E-05 42.2 9.8 22 71-92 192-213 (421)
386 PRK09376 rho transcription ter 92.1 0.62 1.4E-05 43.3 7.5 64 30-100 126-195 (416)
387 PRK14970 DNA polymerase III su 92.1 5.5 0.00012 36.8 14.1 17 75-91 41-57 (367)
388 PF12846 AAA_10: AAA-like doma 92.1 0.3 6.5E-06 43.3 5.5 26 74-100 2-27 (304)
389 PRK06090 DNA polymerase III su 92.0 5.2 0.00011 36.3 13.3 42 58-100 3-51 (319)
390 TIGR00763 lon ATP-dependent pr 92.0 0.78 1.7E-05 47.0 8.9 18 73-90 347-364 (775)
391 cd01126 TraG_VirD4 The TraG/Tr 92.0 0.072 1.6E-06 49.7 1.3 48 75-133 1-48 (384)
392 PF00437 T2SE: Type II/IV secr 91.9 0.33 7.1E-06 42.8 5.4 44 71-123 125-168 (270)
393 COG3972 Superfamily I DNA and 91.8 0.99 2.2E-05 42.9 8.4 79 46-134 152-230 (660)
394 TIGR00602 rad24 checkpoint pro 91.8 2.4 5.3E-05 42.1 11.7 18 74-91 111-128 (637)
395 cd01127 TrwB Bacterial conjuga 91.8 0.19 4.1E-06 47.4 3.9 32 67-99 36-67 (410)
396 KOG0058 Peptide exporter, ABC 91.7 0.31 6.7E-06 48.2 5.3 32 185-216 621-652 (716)
397 PRK14950 DNA polymerase III su 91.7 2.4 5.2E-05 41.9 11.7 18 75-92 40-57 (585)
398 TIGR02525 plasmid_TraJ plasmid 91.7 0.58 1.3E-05 43.4 6.9 28 72-100 148-175 (372)
399 PRK13764 ATPase; Provisional 91.7 0.49 1.1E-05 46.6 6.7 27 72-99 256-282 (602)
400 PRK14959 DNA polymerase III su 91.7 2.1 4.6E-05 42.3 11.1 18 75-92 40-57 (624)
401 PRK10416 signal recognition pa 91.6 1.8 3.9E-05 39.3 9.9 18 74-91 115-132 (318)
402 COG4626 Phage terminase-like p 91.6 3.3 7.2E-05 40.0 11.9 74 58-137 61-145 (546)
403 PTZ00293 thymidine kinase; Pro 91.6 2.4 5.3E-05 35.9 10.0 39 73-120 4-42 (211)
404 COG1197 Mfd Transcription-repa 91.5 1.3 2.8E-05 46.3 9.7 145 33-198 710-885 (1139)
405 PRK13897 type IV secretion sys 91.5 0.14 3E-06 50.5 2.8 25 74-98 159-183 (606)
406 PF03237 Terminase_6: Terminas 91.5 3.1 6.8E-05 37.8 11.7 42 77-125 1-42 (384)
407 KOG2004 Mitochondrial ATP-depe 91.5 2 4.4E-05 42.7 10.5 112 59-216 416-535 (906)
408 COG1219 ClpX ATP-dependent pro 91.5 0.13 2.8E-06 46.1 2.2 17 74-90 98-114 (408)
409 PRK14955 DNA polymerase III su 91.4 2.6 5.6E-05 39.5 11.2 17 76-92 41-57 (397)
410 PRK14951 DNA polymerase III su 91.3 1.5 3.3E-05 43.4 9.8 17 76-92 41-57 (618)
411 TIGR03346 chaperone_ClpB ATP-d 91.3 2.2 4.7E-05 44.3 11.3 18 74-91 195-212 (852)
412 PRK04841 transcriptional regul 91.2 3.3 7.2E-05 43.0 12.8 42 188-244 123-164 (903)
413 KOG0729 26S proteasome regulat 91.2 2.8 6E-05 36.8 10.0 17 74-90 212-228 (435)
414 KOG2228 Origin recognition com 91.0 5.4 0.00012 36.3 11.8 45 171-216 123-167 (408)
415 cd01129 PulE-GspE PulE/GspE Th 91.0 0.67 1.4E-05 40.9 6.4 43 52-98 60-104 (264)
416 PHA00729 NTP-binding motif con 91.0 5.2 0.00011 34.3 11.5 16 75-90 19-34 (226)
417 cd01130 VirB11-like_ATPase Typ 91.0 0.37 8E-06 40.0 4.5 32 59-90 10-42 (186)
418 PF10412 TrwB_AAD_bind: Type I 90.8 0.38 8.2E-06 45.0 4.9 32 68-100 10-41 (386)
419 PRK04328 hypothetical protein; 90.8 0.53 1.2E-05 41.1 5.5 53 72-134 22-74 (249)
420 TIGR02012 tigrfam_recA protein 90.8 0.61 1.3E-05 42.3 6.0 43 72-123 54-96 (321)
421 cd01394 radB RadB. The archaea 90.7 1.5 3.2E-05 37.3 8.1 42 67-117 8-54 (218)
422 cd03115 SRP The signal recogni 90.7 7.8 0.00017 31.4 14.2 16 76-91 3-18 (173)
423 PRK07133 DNA polymerase III su 90.7 4.9 0.00011 40.6 12.6 17 76-92 43-59 (725)
424 TIGR03345 VI_ClpV1 type VI sec 90.7 3.3 7.2E-05 42.9 11.8 28 63-90 192-225 (852)
425 PRK08840 replicative DNA helic 90.7 5.3 0.00011 38.3 12.5 151 72-246 216-382 (464)
426 COG0466 Lon ATP-dependent Lon 90.6 2.5 5.4E-05 42.1 10.2 68 143-216 380-447 (782)
427 TIGR00665 DnaB replicative DNA 90.6 4.1 9E-05 38.6 11.8 129 72-215 194-338 (434)
428 TIGR02640 gas_vesic_GvpN gas v 90.5 0.31 6.7E-06 42.9 3.8 28 64-91 12-39 (262)
429 COG0210 UvrD Superfamily I DNA 90.5 0.88 1.9E-05 45.6 7.5 71 58-135 2-72 (655)
430 PRK08006 replicative DNA helic 90.5 5.8 0.00013 38.1 12.7 151 72-246 223-389 (471)
431 CHL00176 ftsH cell division pr 90.5 2.2 4.8E-05 42.5 10.1 55 33-90 178-233 (638)
432 PRK05748 replicative DNA helic 90.4 4.7 0.0001 38.5 12.0 129 73-214 203-347 (448)
433 CHL00095 clpC Clp protease ATP 90.4 2.3 5.1E-05 43.8 10.5 18 74-91 201-218 (821)
434 TIGR03743 SXT_TraD conjugative 90.3 0.76 1.6E-05 45.8 6.7 52 74-134 177-230 (634)
435 TIGR02524 dot_icm_DotB Dot/Icm 90.2 0.33 7.1E-06 44.8 3.9 27 72-99 133-159 (358)
436 PRK14953 DNA polymerase III su 90.2 7.8 0.00017 37.4 13.3 17 76-92 41-57 (486)
437 COG1074 RecB ATP-dependent exo 90.2 0.75 1.6E-05 49.1 7.0 61 72-136 15-75 (1139)
438 COG0467 RAD55 RecA-superfamily 90.1 0.66 1.4E-05 40.7 5.5 53 72-134 22-74 (260)
439 KOG2543 Origin recognition com 90.0 11 0.00023 35.0 13.0 63 186-264 115-179 (438)
440 PRK09112 DNA polymerase III su 90.0 3.8 8.2E-05 37.8 10.6 30 70-100 39-71 (351)
441 PF01443 Viral_helicase1: Vira 90.0 0.49 1.1E-05 40.4 4.6 14 76-89 1-14 (234)
442 PRK08506 replicative DNA helic 89.9 4 8.7E-05 39.2 11.1 113 73-200 192-316 (472)
443 KOG0652 26S proteasome regulat 89.9 1.8 3.8E-05 37.9 7.7 18 73-90 205-222 (424)
444 cd01393 recA_like RecA is a b 89.8 2.2 4.7E-05 36.3 8.5 45 73-120 19-63 (226)
445 PRK14954 DNA polymerase III su 89.8 3.5 7.6E-05 41.0 10.8 28 185-216 126-153 (620)
446 PRK08451 DNA polymerase III su 89.8 3.5 7.5E-05 40.2 10.5 22 76-98 39-60 (535)
447 PRK10436 hypothetical protein; 89.6 0.56 1.2E-05 44.8 5.0 38 61-99 204-243 (462)
448 PRK13850 type IV secretion sys 89.5 0.26 5.7E-06 49.2 2.8 24 74-97 140-163 (670)
449 KOG0740 AAA+-type ATPase [Post 89.4 3.3 7.1E-05 39.0 9.6 70 186-266 245-323 (428)
450 KOG2036 Predicted P-loop ATPas 89.3 5.6 0.00012 39.6 11.3 61 60-128 255-322 (1011)
451 PRK06305 DNA polymerase III su 89.2 8.5 0.00018 36.8 12.6 18 75-92 41-58 (451)
452 PRK08760 replicative DNA helic 89.2 4.8 0.0001 38.7 11.0 129 73-215 229-372 (476)
453 TIGR03754 conj_TOL_TraD conjug 89.1 1.2 2.6E-05 44.2 6.8 54 73-135 180-235 (643)
454 PRK07004 replicative DNA helic 88.9 2.1 4.4E-05 41.1 8.3 131 72-215 212-357 (460)
455 COG2401 ABC-type ATPase fused 88.8 0.48 1E-05 44.1 3.7 52 41-94 375-430 (593)
456 PRK14971 DNA polymerase III su 88.8 4.8 0.0001 40.1 10.9 17 76-92 42-58 (614)
457 TIGR02538 type_IV_pilB type IV 88.8 0.67 1.4E-05 45.6 5.0 44 52-99 296-341 (564)
458 TIGR02788 VirB11 P-type DNA tr 88.6 0.88 1.9E-05 41.1 5.4 20 70-89 141-160 (308)
459 KOG0744 AAA+-type ATPase [Post 88.6 2.8 6.1E-05 37.9 8.2 98 74-176 178-310 (423)
460 PRK11034 clpA ATP-dependent Cl 88.5 3.9 8.5E-05 41.7 10.3 17 75-91 490-506 (758)
461 PF12775 AAA_7: P-loop contain 88.1 0.37 8E-06 42.7 2.5 19 71-89 31-49 (272)
462 PF13555 AAA_29: P-loop contai 88.1 0.52 1.1E-05 31.6 2.6 18 72-89 22-39 (62)
463 KOG0741 AAA+-type ATPase [Post 88.1 6.9 0.00015 37.8 10.8 18 185-202 597-614 (744)
464 PRK10689 transcription-repair 87.8 2.9 6.3E-05 44.7 9.2 79 110-198 809-891 (1147)
465 TIGR00767 rho transcription te 87.8 4 8.8E-05 38.2 9.1 19 72-90 167-185 (415)
466 COG1132 MdlB ABC-type multidru 87.8 1.5 3.3E-05 43.1 6.9 32 185-216 482-513 (567)
467 PRK05636 replicative DNA helic 87.7 3.2 6.8E-05 40.3 8.7 17 75-91 267-283 (505)
468 PRK13876 conjugal transfer cou 87.5 0.44 9.6E-06 47.5 2.9 25 74-98 145-169 (663)
469 TIGR02639 ClpA ATP-dependent C 87.5 4.6 9.9E-05 41.2 10.2 16 75-90 486-501 (731)
470 PF13481 AAA_25: AAA domain; P 87.5 2.7 5.9E-05 34.6 7.3 62 72-135 31-94 (193)
471 PF04665 Pox_A32: Poxvirus A32 87.4 0.94 2E-05 39.3 4.5 23 75-98 15-37 (241)
472 PRK09165 replicative DNA helic 87.4 7.8 0.00017 37.6 11.2 120 74-200 218-355 (497)
473 cd01128 rho_factor Transcripti 87.4 3.7 8E-05 35.9 8.3 19 71-89 14-32 (249)
474 TIGR01420 pilT_fam pilus retra 87.3 1.2 2.6E-05 40.9 5.4 43 72-122 121-163 (343)
475 PRK13695 putative NTPase; Prov 87.2 3.1 6.8E-05 33.9 7.4 17 75-91 2-18 (174)
476 PRK05595 replicative DNA helic 87.2 3.1 6.7E-05 39.7 8.3 129 73-215 201-344 (444)
477 TIGR02784 addA_alphas double-s 87.2 1.9 4.2E-05 46.2 7.6 59 72-136 9-67 (1141)
478 PF08423 Rad51: Rad51; InterP 87.1 2.9 6.2E-05 36.7 7.5 116 65-200 25-147 (256)
479 cd01131 PilT Pilus retraction 87.1 1.2 2.7E-05 37.3 5.0 22 76-98 4-25 (198)
480 PRK06321 replicative DNA helic 87.0 11 0.00025 36.1 12.0 126 75-215 228-372 (472)
481 TIGR03819 heli_sec_ATPase heli 86.9 2.2 4.8E-05 39.1 6.9 58 54-123 160-218 (340)
482 TIGR02397 dnaX_nterm DNA polym 86.9 7.1 0.00015 35.7 10.4 24 75-99 38-61 (355)
483 KOG2170 ATPase of the AAA+ sup 86.8 3.2 7E-05 37.1 7.4 60 187-255 179-238 (344)
484 COG1674 FtsK DNA segregation A 86.8 9.4 0.0002 39.7 12.1 29 74-102 531-559 (858)
485 TIGR02868 CydC thiol reductant 86.8 1 2.2E-05 43.9 5.0 31 185-215 487-517 (529)
486 PRK10787 DNA-binding ATP-depen 86.7 4.3 9.2E-05 41.6 9.4 44 168-215 402-445 (784)
487 TIGR02533 type_II_gspE general 86.7 0.83 1.8E-05 44.0 4.2 38 60-98 227-266 (486)
488 TIGR00580 mfd transcription-re 86.7 3.4 7.5E-05 43.1 8.9 79 110-198 660-742 (926)
489 PF01078 Mg_chelatase: Magnesi 86.7 0.78 1.7E-05 38.7 3.5 19 72-90 21-39 (206)
490 COG2842 Uncharacterized ATPase 86.6 4.2 9.1E-05 36.2 8.0 41 68-121 89-129 (297)
491 PF01580 FtsK_SpoIIIE: FtsK/Sp 86.5 1.7 3.7E-05 36.5 5.6 27 73-99 38-64 (205)
492 KOG0344 ATP-dependent RNA heli 86.3 19 0.0004 35.1 12.7 99 80-196 364-466 (593)
493 cd03221 ABCF_EF-3 ABCF_EF-3 E 86.3 2.8 6.1E-05 33.1 6.4 29 186-214 88-116 (144)
494 PF06309 Torsin: Torsin; Inte 86.2 3.4 7.3E-05 32.0 6.5 59 76-135 56-114 (127)
495 TIGR02767 TraG-Ti Ti-type conj 86.2 0.6 1.3E-05 46.3 3.0 23 74-96 212-234 (623)
496 TIGR03575 selen_PSTK_euk L-ser 86.1 4.2 9E-05 37.3 8.1 15 76-90 2-16 (340)
497 PRK05917 DNA polymerase III su 85.8 14 0.0003 33.1 11.1 28 185-213 94-121 (290)
498 TIGR03345 VI_ClpV1 type VI sec 85.8 3.7 8.1E-05 42.5 8.5 16 76-91 599-614 (852)
499 PRK13531 regulatory ATPase Rav 85.7 1.7 3.7E-05 41.6 5.6 27 64-90 30-56 (498)
500 PRK06647 DNA polymerase III su 85.6 17 0.00038 35.8 12.7 18 75-92 40-57 (563)
No 1
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.6e-52 Score=373.58 Aligned_cols=273 Identities=48% Similarity=0.784 Sum_probs=235.3
Q ss_pred ccccccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCC
Q 043110 29 KEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRS 108 (316)
Q Consensus 29 ~~~~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~ 108 (316)
+.++..+.|..+||++.+...|..+|++..||.+|+++||.+++|+|+++.++||||||++|++|+++.+....++..+.
T Consensus 130 e~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs 209 (708)
T KOG0348|consen 130 EAPFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRS 209 (708)
T ss_pred ccccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCcccccc
Confidence 34588899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCcee
Q 043110 109 SGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLR 188 (316)
Q Consensus 109 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~ 188 (316)
.|+.|||++||||||.|+|+.++++...+.|++.++++||.....+..++++|++|+|+|||||++++.+...+.++.++
T Consensus 210 ~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LR 289 (708)
T KOG0348|consen 210 DGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLR 289 (708)
T ss_pred CCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCCCC
Q 043110 189 WIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFP 268 (316)
Q Consensus 189 ~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~~~ 268 (316)
|||+||||++++.||..++..|++.+.+.. +..-.....+...|.+++|||+++.|.+++...|+||++|..+.....
T Consensus 290 wlVlDEaDrlleLGfekdit~Il~~v~~~~--~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~ 367 (708)
T KOG0348|consen 290 WLVLDEADRLLELGFEKDITQILKAVHSIQ--NAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQ 367 (708)
T ss_pred EEEecchhHHHhccchhhHHHHHHHHhhcc--chhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhh
Confidence 999999999999999999999999996421 111112223446899999999999999999999999999996554311
Q ss_pred CCCCCcccccccchhhhhhcCCCCC-CCCCCCccccCcceeeeEEee
Q 043110 269 EDKSNVHFGSLESDVKEEVEHPNTT-LSSSTEDFMLPAKLVQRYVKG 314 (316)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~q~~~~~ 314 (316)
. .+. .+ .+++.+.. -....+.|.+|..|.|+|+.+
T Consensus 368 ~---------~p~-~~-a~~ev~~~~~~~~l~~~~iPeqL~qry~vV 403 (708)
T KOG0348|consen 368 L---------NPK-DK-AVQEVDDGPAGDKLDSFAIPEQLLQRYTVV 403 (708)
T ss_pred c---------Ccc-hh-hhhhcCCcccccccccccCcHHhhhceEec
Confidence 1 111 11 11111222 112235689999999999875
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.2e-50 Score=349.57 Aligned_cols=238 Identities=37% Similarity=0.562 Sum_probs=218.2
Q ss_pred ccCchhhhhhhhccccccccccccc----cccccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEc
Q 043110 5 PLNSQTISKKKKRNDKMSKKKETVK----EIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNA 80 (316)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a 80 (316)
+++|..|++...+.+..+.+..... ......+|.++++++++.+++ +..||..||++|+++||.++.|+|+|+.|
T Consensus 27 ~las~~~~~~~~~~~~~~~s~~~~~~~~~~~e~~~sf~dLgv~~~L~~ac-~~l~~~~PT~IQ~~aiP~~L~g~dvIglA 105 (476)
T KOG0330|consen 27 SLASEGWKKNEESGDKFILSAANRNEEMQTDESFKSFADLGVHPELLEAC-QELGWKKPTKIQSEAIPVALGGRDVIGLA 105 (476)
T ss_pred cccchhhhhhhhhccchhhhhhhhcchhhhhhhhcchhhcCcCHHHHHHH-HHhCcCCCchhhhhhcchhhCCCcEEEEe
Confidence 7889999999998888877654332 345667899999999999999 66799999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhc
Q 043110 81 ATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRK 160 (316)
Q Consensus 81 ~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 160 (316)
.||||||.+|++|+++.+.... ..++++|++||||||.||.++++.++...+ +.+.++.||.+...+...+.+
T Consensus 106 eTGSGKT~afaLPIl~~LL~~p------~~~~~lVLtPtRELA~QI~e~fe~Lg~~ig-lr~~~lvGG~~m~~q~~~L~k 178 (476)
T KOG0330|consen 106 ETGSGKTGAFALPILQRLLQEP------KLFFALVLTPTRELAQQIAEQFEALGSGIG-LRVAVLVGGMDMMLQANQLSK 178 (476)
T ss_pred ccCCCchhhhHHHHHHHHHcCC------CCceEEEecCcHHHHHHHHHHHHHhccccC-eEEEEEecCchHHHHHHHhhc
Confidence 9999999999999999998732 248899999999999999999999988765 778889999999999999999
Q ss_pred CCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEee
Q 043110 161 GISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSA 240 (316)
Q Consensus 161 ~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SA 240 (316)
.|||+|+|||+|++++.+.+.+.+..++++|+||||+++++.|.+.++.|++.+|. ++|+++|||
T Consensus 179 kPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~---------------erqt~LfsA 243 (476)
T KOG0330|consen 179 KPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPR---------------ERQTFLFSA 243 (476)
T ss_pred CCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCc---------------cceEEEEEe
Confidence 99999999999999999989999999999999999999999999999999999997 999999999
Q ss_pred ecchhHHHHHHHhcCCCEEEEcCCC
Q 043110 241 TLNEKVNHLTKISLETPVLIGLDEK 265 (316)
Q Consensus 241 T~~~~v~~~~~~~l~~p~~i~~~~~ 265 (316)
|||+.+.++.+..+++|+.|.+...
T Consensus 244 TMt~kv~kL~rasl~~p~~v~~s~k 268 (476)
T KOG0330|consen 244 TMTKKVRKLQRASLDNPVKVAVSSK 268 (476)
T ss_pred ecchhhHHHHhhccCCCeEEeccch
Confidence 9999999999999999999987754
No 3
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-46 Score=337.43 Aligned_cols=226 Identities=38% Similarity=0.580 Sum_probs=208.4
Q ss_pred CCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEE
Q 043110 35 CCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 114 (316)
Q Consensus 35 ~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 114 (316)
.+|.+++|+..+++++ ..+||..|||||..+||..+.|+|++.+|.||||||.+|++|+++++...... ....++|
T Consensus 181 ~sF~~mNLSRPlLka~-~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~---~~~TRVL 256 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKAC-STLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK---VAATRVL 256 (691)
T ss_pred hhHHhcccchHHHHHH-HhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc---CcceeEE
Confidence 3899999999999999 88999999999999999999999999999999999999999999999874432 3467899
Q ss_pred EEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEec
Q 043110 115 VLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDE 194 (316)
Q Consensus 115 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDE 194 (316)
||+|||||+.|++.+.++++.... +.+++..||.+...+...|+..|||+|+|||||.+|+.+...+.+.++..+|+||
T Consensus 257 VL~PTRELaiQv~sV~~qlaqFt~-I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDE 335 (691)
T KOG0338|consen 257 VLVPTRELAIQVHSVTKQLAQFTD-ITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDE 335 (691)
T ss_pred EEeccHHHHHHHHHHHHHHHhhcc-ceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEech
Confidence 999999999999999999998765 8889999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCCCCCCCCCc
Q 043110 195 ADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKSNV 274 (316)
Q Consensus 195 ad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~~~~~~~~~ 274 (316)
||+|++.||.++++.|++.+++ ++|+++|||||+..|+.|++.-|+.|+.|.++.+........+
T Consensus 336 ADRMLeegFademnEii~lcpk---------------~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQ 400 (691)
T KOG0338|consen 336 ADRMLEEGFADEMNEIIRLCPK---------------NRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQ 400 (691)
T ss_pred HHHHHHHHHHHHHHHHHHhccc---------------cccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhH
Confidence 9999999999999999999999 9999999999999999999999999999999988755555555
Q ss_pred cccccc
Q 043110 275 HFGSLE 280 (316)
Q Consensus 275 ~~~~~~ 280 (316)
.|+...
T Consensus 401 EFiRIR 406 (691)
T KOG0338|consen 401 EFIRIR 406 (691)
T ss_pred HHheec
Confidence 555443
No 4
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-44 Score=335.01 Aligned_cols=214 Identities=37% Similarity=0.640 Sum_probs=199.6
Q ss_pred CCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEE
Q 043110 35 CCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 114 (316)
Q Consensus 35 ~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 114 (316)
..|++++|++++.+.| +..||..|||||.+.||.++.|+|++..|.||||||++|++|++.++........+..++++|
T Consensus 91 ~~f~~~~ls~~~~~~l-k~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vL 169 (519)
T KOG0331|consen 91 AAFQELGLSEELMKAL-KEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVL 169 (519)
T ss_pred hhhhcccccHHHHHHH-HhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEE
Confidence 4799999999999999 567999999999999999999999999999999999999999999998866666777899999
Q ss_pred EEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEec
Q 043110 115 VLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDE 194 (316)
Q Consensus 115 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDE 194 (316)
||+||||||.|+.+.+..++.... +.+.|++||.....|...+.++++|+|+|||||.+++.. ....++++.++|+||
T Consensus 170 VL~PTRELA~QV~~~~~~~~~~~~-~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~-g~~~l~~v~ylVLDE 247 (519)
T KOG0331|consen 170 VLAPTRELAVQVQAEAREFGKSLR-LRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE-GSLNLSRVTYLVLDE 247 (519)
T ss_pred EEcCcHHHHHHHHHHHHHHcCCCC-ccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc-CCccccceeEEEecc
Confidence 999999999999999999998765 678899999999999999999999999999999999998 677889999999999
Q ss_pred chhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCC
Q 043110 195 ADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265 (316)
Q Consensus 195 ad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 265 (316)
||+|+|+||+++++.|++.++.. .+|++++|||+|+.+..++..+|.+|+.|.+...
T Consensus 248 ADrMldmGFe~qI~~Il~~i~~~--------------~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~ 304 (519)
T KOG0331|consen 248 ADRMLDMGFEPQIRKILSQIPRP--------------DRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNK 304 (519)
T ss_pred HHhhhccccHHHHHHHHHhcCCC--------------cccEEEEeeeccHHHHHHHHHHhcCceEEEecch
Confidence 99999999999999999999542 5699999999999999999999999999988765
No 5
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-44 Score=319.12 Aligned_cols=233 Identities=33% Similarity=0.531 Sum_probs=203.2
Q ss_pred cCCcccCC--CCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCe
Q 043110 34 SCCFSSLG--LDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 111 (316)
Q Consensus 34 ~~~f~~~~--l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~ 111 (316)
...|++++ |++++++++ +.+||..+||+|..+||.++.++|+++.|+||||||+||++|++..+.++..+.... .+
T Consensus 3 ~~~~~~l~~~L~~~l~~~l-~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~-~v 80 (567)
T KOG0345|consen 3 PKSFSSLAPPLSPWLLEAL-DESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPG-QV 80 (567)
T ss_pred CcchhhcCCCccHHHHHHH-HhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCcc-ce
Confidence 34677775 669999999 778999999999999999999999999999999999999999999997655543332 46
Q ss_pred eEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHh-cCCcEEEeCcHHHHHHHhcC-CccccCceeE
Q 043110 112 FALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLR-KGISILVATPGHLLDHLKHT-SSFLHTNLRW 189 (316)
Q Consensus 112 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~IlV~Tp~~l~~~l~~~-~~~~~~~l~~ 189 (316)
-+|||+||||||.||.+++..+...+..+.+.++.||.+.......+. ++++|+|||||||.+++.+. ..+.+.++.+
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~ 160 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEI 160 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccce
Confidence 799999999999999999999999988888999999988877766654 56899999999999999873 3345669999
Q ss_pred EEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCCC--
Q 043110 190 IIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKF-- 267 (316)
Q Consensus 190 lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~~-- 267 (316)
||+||||+++|+||...++.|++.||+ ++++-+||||....+.++++..|+||+.|.+..++.
T Consensus 161 LVLDEADrLldmgFe~~~n~ILs~LPK---------------QRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~ 225 (567)
T KOG0345|consen 161 LVLDEADRLLDMGFEASVNTILSFLPK---------------QRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSA 225 (567)
T ss_pred EEecchHhHhcccHHHHHHHHHHhccc---------------ccccccccchhhHHHHHHHHhhccCceeeeeccccccc
Confidence 999999999999999999999999999 999999999999999999999999999999988775
Q ss_pred CCCCCCcccccccchh
Q 043110 268 PEDKSNVHFGSLESDV 283 (316)
Q Consensus 268 ~~~~~~~~~~~~~~~~ 283 (316)
.|++....|...++++
T Consensus 226 tPS~L~~~Y~v~~a~e 241 (567)
T KOG0345|consen 226 TPSSLALEYLVCEADE 241 (567)
T ss_pred CchhhcceeeEecHHH
Confidence 5555666666655544
No 6
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-44 Score=319.79 Aligned_cols=230 Identities=33% Similarity=0.518 Sum_probs=200.6
Q ss_pred CCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEE
Q 043110 35 CCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 114 (316)
Q Consensus 35 ~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 114 (316)
.+|+++||++.+++++ .++||+.||-+|+.+||.+++|+|+++.|.||||||++|++|+++.+...+.......++.++
T Consensus 19 ktFe~~gLD~RllkAi-~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~ 97 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAI-TKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAV 97 (569)
T ss_pred ccHHHhCCCHHHHHHH-HHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeE
Confidence 6899999999999999 678999999999999999999999999999999999999999999998877665667899999
Q ss_pred EEeCChHHHHHHHHHHHHHHhhcC-CceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEe
Q 043110 115 VLVPTSELCLLVYEILQKLLHRFR-WIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFD 193 (316)
Q Consensus 115 il~Pt~~L~~Q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViD 193 (316)
|++||+|||.|++.++.++..++. .+....+....+.......+...++|+|+||++++.++.......+..+++||+|
T Consensus 98 iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvD 177 (569)
T KOG0346|consen 98 ILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVD 177 (569)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEec
Confidence 999999999999999999988775 3333334434444455567788899999999999999987555677899999999
Q ss_pred cchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCCCCCCCCC
Q 043110 194 EADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKSN 273 (316)
Q Consensus 194 Ead~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~~~~~~~~ 273 (316)
|||.++..||.+++..+.+.+|. .+|.++||||+++++..+.+++|++|+.+.+.+++.++...-
T Consensus 178 EADLllsfGYeedlk~l~~~LPr---------------~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL 242 (569)
T KOG0346|consen 178 EADLLLSFGYEEDLKKLRSHLPR---------------IYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQL 242 (569)
T ss_pred hhhhhhhcccHHHHHHHHHhCCc---------------hhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccc
Confidence 99999999999999999999998 899999999999999999999999999999988875544444
Q ss_pred ccccccc
Q 043110 274 VHFGSLE 280 (316)
Q Consensus 274 ~~~~~~~ 280 (316)
++|....
T Consensus 243 ~Qy~v~c 249 (569)
T KOG0346|consen 243 TQYQVKC 249 (569)
T ss_pred eEEEEEe
Confidence 4444443
No 7
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=6.1e-45 Score=330.53 Aligned_cols=213 Identities=37% Similarity=0.606 Sum_probs=196.2
Q ss_pred ccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCee
Q 043110 33 ASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 112 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 112 (316)
....|++++|+....++| +..+|..||.+|+.+||..+.|+|++..|.||||||++|++|+++.+.+... ....|.-
T Consensus 67 ~~~kF~dlpls~~t~kgL-ke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kW--s~~DGlG 143 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGL-KEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKW--SPTDGLG 143 (758)
T ss_pred hhhhHHhCCCchHHHHhH-hhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCC--CCCCCce
Confidence 345899999999999999 5569999999999999999999999999999999999999999999987543 2346788
Q ss_pred EEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEE
Q 043110 113 ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIF 192 (316)
Q Consensus 113 ~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lVi 192 (316)
||||+||||||.|+++++.+.+.. .....++++||.+...+..++. +++|+|||||||++|+.....+..+++.+||+
T Consensus 144 alIISPTRELA~QtFevL~kvgk~-h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLvL 221 (758)
T KOG0343|consen 144 ALIISPTRELALQTFEVLNKVGKH-HDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLVL 221 (758)
T ss_pred eEEecchHHHHHHHHHHHHHHhhc-cccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEEe
Confidence 999999999999999999999976 4578899999999888877765 58999999999999999988888899999999
Q ss_pred ecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCC
Q 043110 193 DEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265 (316)
Q Consensus 193 DEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 265 (316)
||||+++|+||...++.|++.+|. .+|+++||||-+..+..++++.+.+|++|.+..+
T Consensus 222 DEADR~LDMGFk~tL~~Ii~~lP~---------------~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~ 279 (758)
T KOG0343|consen 222 DEADRMLDMGFKKTLNAIIENLPK---------------KRQTLLFSATQTKSVKDLARLSLKDPVYVSVHEN 279 (758)
T ss_pred ccHHHHHHHhHHHHHHHHHHhCCh---------------hheeeeeecccchhHHHHHHhhcCCCcEEEEecc
Confidence 999999999999999999999998 9999999999999999999999999999998754
No 8
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.8e-43 Score=333.96 Aligned_cols=226 Identities=40% Similarity=0.606 Sum_probs=200.2
Q ss_pred CCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEE
Q 043110 35 CCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 114 (316)
Q Consensus 35 ~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 114 (316)
..|+++++++++++++ .+.||..|||+|.++||.++.|+|++++|+||||||++|++|+++.+..... ..... +|
T Consensus 29 ~~F~~l~l~~~ll~~l-~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~---~~~~~-aL 103 (513)
T COG0513 29 PEFASLGLSPELLQAL-KDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVE---RKYVS-AL 103 (513)
T ss_pred CCHhhcCCCHHHHHHH-HHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccc---cCCCc-eE
Confidence 6799999999999999 6689999999999999999999999999999999999999999999764311 01111 99
Q ss_pred EEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEec
Q 043110 115 VLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDE 194 (316)
Q Consensus 115 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDE 194 (316)
|++||||||.|+++.+..++.......+.+++||.+...+...+..+++|||+||||+++++.+. .+.++.++++|+||
T Consensus 104 il~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~-~l~l~~v~~lVlDE 182 (513)
T COG0513 104 ILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG-KLDLSGVETLVLDE 182 (513)
T ss_pred EECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC-CcchhhcCEEEecc
Confidence 99999999999999999999876456788999999999999999989999999999999999984 77889999999999
Q ss_pred chhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCCC--CCCCC
Q 043110 195 ADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKF--PEDKS 272 (316)
Q Consensus 195 ad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~~--~~~~~ 272 (316)
||+|+++||.+++..|+..++. .+|+++||||+|+.+..+++.++++|+.|.+..+.. .....
T Consensus 183 ADrmLd~Gf~~~i~~I~~~~p~---------------~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i 247 (513)
T COG0513 183 ADRMLDMGFIDDIEKILKALPP---------------DRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKI 247 (513)
T ss_pred HhhhhcCCCHHHHHHHHHhCCc---------------ccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCc
Confidence 9999999999999999999987 899999999999999999999999999998885554 45555
Q ss_pred Ccccccccc
Q 043110 273 NVHFGSLES 281 (316)
Q Consensus 273 ~~~~~~~~~ 281 (316)
.+.+..++.
T Consensus 248 ~q~~~~v~~ 256 (513)
T COG0513 248 KQFYLEVES 256 (513)
T ss_pred eEEEEEeCC
Confidence 555555554
No 9
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=3.4e-43 Score=315.86 Aligned_cols=218 Identities=42% Similarity=0.675 Sum_probs=203.7
Q ss_pred ccccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCC
Q 043110 31 IFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSG 110 (316)
Q Consensus 31 ~~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~ 110 (316)
+.....|++..|++...+++ +++||..+|++|+.+||.++.|+|+++.|.||+|||+||++|+++.+.+..+... ++
T Consensus 78 ~~~~~~f~~~~LS~~t~kAi-~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r--~~ 154 (543)
T KOG0342|consen 78 ITTTFRFEEGSLSPLTLKAI-KEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR--NG 154 (543)
T ss_pred hhhhhHhhccccCHHHHHHH-HhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC--CC
Confidence 44556789999999999999 8899999999999999999999999999999999999999999999988666533 68
Q ss_pred eeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEE
Q 043110 111 TFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWI 190 (316)
Q Consensus 111 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~l 190 (316)
..+||+|||||||.|++.+++.+..+.....+.+++||.+...+.+++.++++|+|+|||||.+|+.+...+...+++++
T Consensus 155 ~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~l 234 (543)
T KOG0342|consen 155 TGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCL 234 (543)
T ss_pred eeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhcccee
Confidence 88999999999999999999999988767888999999999999999999999999999999999999988888889999
Q ss_pred EEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcC-CCEEEEcCCCC
Q 043110 191 IFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLE-TPVLIGLDEKK 266 (316)
Q Consensus 191 ViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~-~p~~i~~~~~~ 266 (316)
|+||||++++.||+.+++.|++.+|+ .+|+++||||.|+.|+++++..|. +|++|.+.+..
T Consensus 235 vlDEADrlLd~GF~~di~~Ii~~lpk---------------~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~ 296 (543)
T KOG0342|consen 235 VLDEADRLLDIGFEEDVEQIIKILPK---------------QRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGG 296 (543)
T ss_pred EeecchhhhhcccHHHHHHHHHhccc---------------cceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCC
Confidence 99999999999999999999999998 999999999999999999998887 59999988776
No 10
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.3e-39 Score=304.66 Aligned_cols=220 Identities=31% Similarity=0.483 Sum_probs=192.5
Q ss_pred cccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCC-CCCCC
Q 043110 32 FASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRI-DRSSG 110 (316)
Q Consensus 32 ~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~-~~~~~ 110 (316)
....+|++++|+++++++| +++||..|+|+|++|||.+++|+|++++||||||||++|++|+++.+....... ....+
T Consensus 5 ~~~~~f~~~~l~~~l~~~l-~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~ 83 (423)
T PRK04837 5 LTEQKFSDFALHPQVVEAL-EKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQ 83 (423)
T ss_pred CCCCCHhhCCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCC
Confidence 3457899999999999999 778999999999999999999999999999999999999999999987643321 12346
Q ss_pred eeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEE
Q 043110 111 TFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWI 190 (316)
Q Consensus 111 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~l 190 (316)
+++|||+||+|||.|+++.+..++...+ ..+..++||.....+...+..+++|+|+||++|.+++.. ..+.+++++++
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~-~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~-~~~~l~~v~~l 161 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATG-LKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ-NHINLGAIQVV 161 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCC-ceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccccEE
Confidence 8899999999999999999999987654 566777888888888888888899999999999999976 55677899999
Q ss_pred EEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCCC
Q 043110 191 IFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKF 267 (316)
Q Consensus 191 ViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~~ 267 (316)
|+||||++++++|..++..+++.++... .+|.+++|||++..+..++..++.+|..+.+.....
T Consensus 162 ViDEad~l~~~~f~~~i~~i~~~~~~~~-------------~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~ 225 (423)
T PRK04837 162 VLDEADRMFDLGFIKDIRWLFRRMPPAN-------------QRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQK 225 (423)
T ss_pred EEecHHHHhhcccHHHHHHHHHhCCCcc-------------ceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCc
Confidence 9999999999999999999999887521 578899999999999999999999999998776543
No 11
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6e-41 Score=282.62 Aligned_cols=234 Identities=30% Similarity=0.479 Sum_probs=210.8
Q ss_pred cccccccccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCC
Q 043110 26 ETVKEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRI 105 (316)
Q Consensus 26 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~ 105 (316)
++.+++.-..+|+++||.+++++++ -..||++|+.+|+.|+|.++.|+|++++|++|+|||.+|.+.+++.+.-.
T Consensus 18 eTs~~~~v~~~F~~Mgl~edlLrgi-Y~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~---- 92 (400)
T KOG0328|consen 18 ETSEKVKVIPTFDDMGLKEDLLRGI-YAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS---- 92 (400)
T ss_pred eeccCcccccchhhcCchHHHHHHH-HHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc----
Confidence 3445667778999999999999999 66799999999999999999999999999999999999988888776542
Q ss_pred CCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccC
Q 043110 106 DRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHT 185 (316)
Q Consensus 106 ~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~ 185 (316)
....+++|++|||||+.|+.+.+..++.+++ +.+..+.||.+..+....+.-+.+++.||||+++++++. ..+.-+
T Consensus 93 --~r~tQ~lilsPTRELa~Qi~~vi~alg~~mn-vq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr-~~L~tr 168 (400)
T KOG0328|consen 93 --VRETQALILSPTRELAVQIQKVILALGDYMN-VQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKR-RSLRTR 168 (400)
T ss_pred --cceeeEEEecChHHHHHHHHHHHHHhccccc-ceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHh-cccccc
Confidence 2357799999999999999999999998765 777788899999999999999999999999999999987 455557
Q ss_pred ceeEEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCC
Q 043110 186 NLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265 (316)
Q Consensus 186 ~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 265 (316)
.++++|+||||.|++.||..++-.+++.+|. ..|++++|||+|.++.+..+.|+.+|+.|-+..+
T Consensus 169 ~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~---------------~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrd 233 (400)
T KOG0328|consen 169 AVKMLVLDEADEMLNKGFKEQIYDIYRYLPP---------------GAQVVLVSATLPHEILEMTEKFMTDPVRILVKRD 233 (400)
T ss_pred ceeEEEeccHHHHHHhhHHHHHHHHHHhCCC---------------CceEEEEeccCcHHHHHHHHHhcCCceeEEEecC
Confidence 8999999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccccchh
Q 043110 266 KFPEDKSNVHFGSLESDV 283 (316)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~ 283 (316)
+.+.....+.|+.++.++
T Consensus 234 eltlEgIKqf~v~ve~Ee 251 (400)
T KOG0328|consen 234 ELTLEGIKQFFVAVEKEE 251 (400)
T ss_pred CCchhhhhhheeeechhh
Confidence 988888888888877544
No 12
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3e-39 Score=306.08 Aligned_cols=227 Identities=34% Similarity=0.571 Sum_probs=194.3
Q ss_pred CcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEE
Q 043110 36 CFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALV 115 (316)
Q Consensus 36 ~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~li 115 (316)
+|++++|++++.+.| .++||..||++|+++||.+++|+|++++||||||||++|++|+++.+............+++||
T Consensus 2 ~f~~l~l~~~l~~~l-~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLi 80 (456)
T PRK10590 2 SFDSLGLSPDILRAV-AEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80 (456)
T ss_pred CHHHcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEE
Confidence 699999999999999 6789999999999999999999999999999999999999999999876433222234568999
Q ss_pred EeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecc
Q 043110 116 LVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEA 195 (316)
Q Consensus 116 l~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEa 195 (316)
|+||++||.|+++.++.+..... .....++||.....+...+..+++|+|+||++|++++.. ....++++++||||||
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~-~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~-~~~~l~~v~~lViDEa 158 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLN-IRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQ-NAVKLDQVEILVLDEA 158 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCC-CEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHc-CCcccccceEEEeecH
Confidence 99999999999999999887654 566677888888888888888899999999999998876 4556789999999999
Q ss_pred hhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCCCCCCCCCcc
Q 043110 196 DRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKSNVH 275 (316)
Q Consensus 196 d~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~~~~~~~~~~ 275 (316)
|++++++|...+..++..++. .+|++++|||+++.+..++..++.+|..+.+.............
T Consensus 159 h~ll~~~~~~~i~~il~~l~~---------------~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~ 223 (456)
T PRK10590 159 DRMLDMGFIHDIRRVLAKLPA---------------KRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQH 223 (456)
T ss_pred HHHhccccHHHHHHHHHhCCc---------------cCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEE
Confidence 999999999999999999887 78999999999999999999999999988876554443333334
Q ss_pred ccccc
Q 043110 276 FGSLE 280 (316)
Q Consensus 276 ~~~~~ 280 (316)
+...+
T Consensus 224 ~~~~~ 228 (456)
T PRK10590 224 VHFVD 228 (456)
T ss_pred EEEcC
Confidence 43333
No 13
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.3e-40 Score=294.27 Aligned_cols=228 Identities=32% Similarity=0.543 Sum_probs=203.7
Q ss_pred ccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCee
Q 043110 33 ASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 112 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 112 (316)
..++|+.+|+++.+..++ .+..|..|||+|.+++|..+.|+|++..|.||||||.+|+.|++.++..+. ....+.|+.
T Consensus 221 pvtsfeh~gfDkqLm~ai-rk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~-eL~~g~gPi 298 (731)
T KOG0339|consen 221 PVTSFEHFGFDKQLMTAI-RKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQP-ELKPGEGPI 298 (731)
T ss_pred CcchhhhcCchHHHHHHH-hhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchh-hhcCCCCCe
Confidence 446899999999999999 556999999999999999999999999999999999999999999997644 345678999
Q ss_pred EEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEE
Q 043110 113 ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIF 192 (316)
Q Consensus 113 ~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lVi 192 (316)
+||++||||||.|++..++++++.++ +.+.+++||.....+...|..++.|||||||||.+++.. +...+.++.+||+
T Consensus 299 ~vilvPTrela~Qi~~eaKkf~K~yg-l~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vkm-Katn~~rvS~LV~ 376 (731)
T KOG0339|consen 299 GVILVPTRELASQIFSEAKKFGKAYG-LRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKM-KATNLSRVSYLVL 376 (731)
T ss_pred EEEEeccHHHHHHHHHHHHHhhhhcc-ceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHh-hcccceeeeEEEE
Confidence 99999999999999999999998776 777888999999999999999999999999999999987 6777789999999
Q ss_pred ecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCCCCCCCC
Q 043110 193 DEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKS 272 (316)
Q Consensus 193 DEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~~~~~~~ 272 (316)
||||+|+++||.++++.|...+.. .+|+++||||++..+..+++.+|.+|+.|...+-......+
T Consensus 377 DEadrmfdmGfe~qVrSI~~hirp---------------drQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dI 441 (731)
T KOG0339|consen 377 DEADRMFDMGFEPQVRSIKQHIRP---------------DRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDI 441 (731)
T ss_pred echhhhhccccHHHHHHHHhhcCC---------------cceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccch
Confidence 999999999999999999999987 99999999999999999999999999988877554444433
Q ss_pred Cccccccc
Q 043110 273 NVHFGSLE 280 (316)
Q Consensus 273 ~~~~~~~~ 280 (316)
.+.+.+.
T Consensus 442 -TQ~V~V~ 448 (731)
T KOG0339|consen 442 -TQTVSVC 448 (731)
T ss_pred -hheeeec
Confidence 3334343
No 14
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=6.5e-39 Score=308.72 Aligned_cols=214 Identities=32% Similarity=0.525 Sum_probs=189.1
Q ss_pred cCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeE
Q 043110 34 SCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 113 (316)
Q Consensus 34 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 113 (316)
..+|+++++++.+++.| .++||.+|||+|.++||.+++|+|++++||||||||++|++|++.++..... .....++++
T Consensus 129 ~~~f~~~~l~~~l~~~l-~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~-~~~~~gp~~ 206 (545)
T PTZ00110 129 VVSFEYTSFPDYILKSL-KNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL-LRYGDGPIV 206 (545)
T ss_pred cCCHhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-ccCCCCcEE
Confidence 45899999999999999 7789999999999999999999999999999999999999999988865322 223457889
Q ss_pred EEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEe
Q 043110 114 LVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFD 193 (316)
Q Consensus 114 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViD 193 (316)
|||+||+|||.|+++.++.++.... +...+.+||.....+...+..+++|+|+||++|.+++.. ....+.++++||||
T Consensus 207 LIL~PTreLa~Qi~~~~~~~~~~~~-i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~-~~~~l~~v~~lViD 284 (545)
T PTZ00110 207 LVLAPTRELAEQIREQCNKFGASSK-IRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLES-NVTNLRRVTYLVLD 284 (545)
T ss_pred EEECChHHHHHHHHHHHHHHhcccC-ccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHc-CCCChhhCcEEEee
Confidence 9999999999999999999987643 566778889888888888889999999999999999986 45567899999999
Q ss_pred cchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcC-CCEEEEcCCCC
Q 043110 194 EADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLE-TPVLIGLDEKK 266 (316)
Q Consensus 194 Ead~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~-~p~~i~~~~~~ 266 (316)
|||+|++++|...+..|+..++. .+|++++|||+|+.+..+++.++. +|+.+.+....
T Consensus 285 EAd~mld~gf~~~i~~il~~~~~---------------~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~ 343 (545)
T PTZ00110 285 EADRMLDMGFEPQIRKIVSQIRP---------------DRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLD 343 (545)
T ss_pred hHHhhhhcchHHHHHHHHHhCCC---------------CCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCc
Confidence 99999999999999999998876 889999999999999999998885 68888776543
No 15
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=8.2e-39 Score=311.09 Aligned_cols=220 Identities=33% Similarity=0.536 Sum_probs=194.7
Q ss_pred CCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEE
Q 043110 35 CCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 114 (316)
Q Consensus 35 ~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 114 (316)
.+|++++|++.++++| .++||.+|+|+|.++||.++.|+|++++||||+|||++|++|+++.+... ..++++|
T Consensus 6 ~~f~~l~L~~~ll~al-~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~------~~~~~~L 78 (629)
T PRK11634 6 TTFADLGLKAPILEAL-NDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE------LKAPQIL 78 (629)
T ss_pred CCHhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc------cCCCeEE
Confidence 4699999999999999 77899999999999999999999999999999999999999999987542 2356799
Q ss_pred EEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEec
Q 043110 115 VLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDE 194 (316)
Q Consensus 115 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDE 194 (316)
||+||++||.|+++.+..+........+..++||.....+...+..+++|+|+||+++++++.. ..+.++++++|||||
T Consensus 79 IL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r-~~l~l~~l~~lVlDE 157 (629)
T PRK11634 79 VLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR-GTLDLSKLSGLVLDE 157 (629)
T ss_pred EEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcchhhceEEEecc
Confidence 9999999999999999999877666777888899988888888888999999999999999986 556678999999999
Q ss_pred chhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCCCCCCCCCc
Q 043110 195 ADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKSNV 274 (316)
Q Consensus 195 ad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~~~~~~~~~ 274 (316)
||.|++++|..++..++..++. .+|+++||||+|+.+..+.+.++.+|..|.+...........+
T Consensus 158 Ad~ml~~gf~~di~~Il~~lp~---------------~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q 222 (629)
T PRK11634 158 ADEMLRMGFIEDVETIMAQIPE---------------GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQ 222 (629)
T ss_pred HHHHhhcccHHHHHHHHHhCCC---------------CCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEE
Confidence 9999999999999999999987 8899999999999999999999999999887766544333333
Q ss_pred ccc
Q 043110 275 HFG 277 (316)
Q Consensus 275 ~~~ 277 (316)
.+.
T Consensus 223 ~~~ 225 (629)
T PRK11634 223 SYW 225 (629)
T ss_pred EEE
Confidence 333
No 16
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.1e-38 Score=305.96 Aligned_cols=218 Identities=34% Similarity=0.552 Sum_probs=190.1
Q ss_pred ccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCC-CCCCCCe
Q 043110 33 ASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPR-IDRSSGT 111 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~-~~~~~~~ 111 (316)
...+|++++|++.+++.| .+.||..|||+|.++||.++.|+|+++.||||||||++|++|++.++...... .....++
T Consensus 119 pi~~f~~~~l~~~l~~~L-~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~ 197 (518)
T PLN00206 119 PILSFSSCGLPPKLLLNL-ETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNP 197 (518)
T ss_pred hhcCHHhCCCCHHHHHHH-HHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCc
Confidence 345799999999999999 67899999999999999999999999999999999999999999988653221 1223578
Q ss_pred eEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEE
Q 043110 112 FALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWII 191 (316)
Q Consensus 112 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lV 191 (316)
++|||+||||||.|+++.++.+....+ .....+.||.....+...+..+++|+|+||++|.+++.. ....++++++||
T Consensus 198 ~aLIL~PTreLa~Qi~~~~~~l~~~~~-~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~-~~~~l~~v~~lV 275 (518)
T PLN00206 198 LAMVLTPTRELCVQVEDQAKVLGKGLP-FKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSK-HDIELDNVSVLV 275 (518)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCCC-ceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccchheeEEE
Confidence 999999999999999999998876654 556677888888888888888999999999999999987 466778999999
Q ss_pred EecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCCCCC
Q 043110 192 FDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPE 269 (316)
Q Consensus 192 iDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~~~~ 269 (316)
+||||+|++++|...+..++..++ .+|++++|||+++.+..+++.++.+|+.|.+.......
T Consensus 276 iDEad~ml~~gf~~~i~~i~~~l~----------------~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~ 337 (518)
T PLN00206 276 LDEVDCMLERGFRDQVMQIFQALS----------------QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPN 337 (518)
T ss_pred eecHHHHhhcchHHHHHHHHHhCC----------------CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCC
Confidence 999999999999999999998875 67999999999999999999999999999887665433
No 17
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.1e-38 Score=303.10 Aligned_cols=209 Identities=34% Similarity=0.515 Sum_probs=190.5
Q ss_pred CCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEE
Q 043110 35 CCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 114 (316)
Q Consensus 35 ~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 114 (316)
.+|++++|++.+.++| .++||.+|||+|++|||.+++|+|++++||||||||++|++|+++.+... ..++++|
T Consensus 4 ~~f~~l~l~~~l~~~l-~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~------~~~~~~l 76 (460)
T PRK11776 4 TAFSTLPLPPALLANL-NELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK------RFRVQAL 76 (460)
T ss_pred CChhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc------cCCceEE
Confidence 5799999999999999 77899999999999999999999999999999999999999999988542 2356799
Q ss_pred EEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEec
Q 043110 115 VLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDE 194 (316)
Q Consensus 115 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDE 194 (316)
|++||++||.|+.+.++.++.......+..++||.+...+...+..+++|+|+||+++.+++.. ....++++++||+||
T Consensus 77 il~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~-~~~~l~~l~~lViDE 155 (460)
T PRK11776 77 VLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRK-GTLDLDALNTLVLDE 155 (460)
T ss_pred EEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHc-CCccHHHCCEEEEEC
Confidence 9999999999999999999876656777788899999888888888999999999999999986 456678999999999
Q ss_pred chhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCC
Q 043110 195 ADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKK 266 (316)
Q Consensus 195 ad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~ 266 (316)
||+|++++|...+..++..++. .+|+++||||+|+.+..++..++.+|..+.+....
T Consensus 156 ad~~l~~g~~~~l~~i~~~~~~---------------~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~ 212 (460)
T PRK11776 156 ADRMLDMGFQDAIDAIIRQAPA---------------RRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH 212 (460)
T ss_pred HHHHhCcCcHHHHHHHHHhCCc---------------ccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC
Confidence 9999999999999999999987 88999999999999999999999999999887654
No 18
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.3e-41 Score=285.80 Aligned_cols=224 Identities=30% Similarity=0.458 Sum_probs=199.7
Q ss_pred cccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCe
Q 043110 32 FASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 111 (316)
Q Consensus 32 ~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~ 111 (316)
.....|++++|..+++..+ -..||++|+|+|.++||.++.|+|+++.|..|+|||.+|++|+++.+... ....
T Consensus 82 TkG~efEd~~Lkr~LLmgI-fe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~------~~~I 154 (459)
T KOG0326|consen 82 TKGNEFEDYCLKRELLMGI-FEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK------KNVI 154 (459)
T ss_pred ccCccHHHhhhhHHHHHHH-HHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc------ccce
Confidence 4557899999999999999 55699999999999999999999999999999999999999999988653 3467
Q ss_pred eEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEE
Q 043110 112 FALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWII 191 (316)
Q Consensus 112 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lV 191 (316)
+++|++||||||.|+.+.++.+++.++ +.+....||++..+..-++...++++|+||||++++... +.-.++++.++|
T Consensus 155 Q~~ilVPtrelALQtSqvc~~lskh~~-i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~K-gVa~ls~c~~lV 232 (459)
T KOG0326|consen 155 QAIILVPTRELALQTSQVCKELSKHLG-IKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKK-GVADLSDCVILV 232 (459)
T ss_pred eEEEEeecchhhHHHHHHHHHHhcccC-eEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhc-ccccchhceEEE
Confidence 799999999999999999999999877 777888899999999999999999999999999999986 556778999999
Q ss_pred EecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCCCCCCC
Q 043110 192 FDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDK 271 (316)
Q Consensus 192 iDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~~~~~~ 271 (316)
+||||.|++..|.+.++.++..+|+ .+|++++|||+|-.|..|...+|++|..|.+-++ .....
T Consensus 233 ~DEADKlLs~~F~~~~e~li~~lP~---------------~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e-Ltl~G 296 (459)
T KOG0326|consen 233 MDEADKLLSVDFQPIVEKLISFLPK---------------ERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE-LTLKG 296 (459)
T ss_pred echhhhhhchhhhhHHHHHHHhCCc---------------cceeeEEecccchhHHHHHHHhccCcceeehhhh-hhhcc
Confidence 9999999999999999999999999 9999999999999999999999999999987654 33334
Q ss_pred CCccccccc
Q 043110 272 SNVHFGSLE 280 (316)
Q Consensus 272 ~~~~~~~~~ 280 (316)
..++|..++
T Consensus 297 vtQyYafV~ 305 (459)
T KOG0326|consen 297 VTQYYAFVE 305 (459)
T ss_pred hhhheeeec
Confidence 444444443
No 19
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.8e-40 Score=284.41 Aligned_cols=230 Identities=35% Similarity=0.507 Sum_probs=200.0
Q ss_pred ccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCee
Q 043110 33 ASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 112 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 112 (316)
.-..|+.+||++|+.+.| +.+|+..|||+|+.|||.|+.|+|++.+|.||||||.+|.+|+++.+.. ..+|.+
T Consensus 5 t~~~F~~LGl~~Wlve~l-~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLse------dP~giF 77 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQL-KALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSE------DPYGIF 77 (442)
T ss_pred ccCchhhcCccHHHHHHH-HHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhcc------CCCcce
Confidence 346899999999999999 7899999999999999999999999999999999999999999999976 246889
Q ss_pred EEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcC---CccccCceeE
Q 043110 113 ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHT---SSFLHTNLRW 189 (316)
Q Consensus 113 ~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~---~~~~~~~l~~ 189 (316)
++|++|||||+-|+.+.+..++... ...+++++||.+.-.+...+...+|++|+|||++.+++.+. ....+..+++
T Consensus 78 alvlTPTrELA~QiaEQF~alGk~l-~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkf 156 (442)
T KOG0340|consen 78 ALVLTPTRELALQIAEQFIALGKLL-NLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKF 156 (442)
T ss_pred EEEecchHHHHHHHHHHHHHhcccc-cceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceee
Confidence 9999999999999999999888764 58889999999999999999999999999999999999876 3446789999
Q ss_pred EEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCC--CEEEEcCCCCC
Q 043110 190 IIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLET--PVLIGLDEKKF 267 (316)
Q Consensus 190 lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~--p~~i~~~~~~~ 267 (316)
+|+||||++++..|.+.++.+.+.+|. .+|+++||||+++.+..+..-.... +..+...++..
T Consensus 157 lVlDEADrvL~~~f~d~L~~i~e~lP~---------------~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vs 221 (442)
T KOG0340|consen 157 LVLDEADRVLAGCFPDILEGIEECLPK---------------PRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVS 221 (442)
T ss_pred EEecchhhhhccchhhHHhhhhccCCC---------------ccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCC
Confidence 999999999999999999999999998 8999999999999999987766654 44555544544
Q ss_pred CCCCCCcccccccchhhh
Q 043110 268 PEDKSNVHFGSLESDVKE 285 (316)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~ 285 (316)
.++...+.|..++.++++
T Consensus 222 tvetL~q~yI~~~~~vkd 239 (442)
T KOG0340|consen 222 TVETLYQGYILVSIDVKD 239 (442)
T ss_pred chhhhhhheeecchhhhH
Confidence 555555566666655544
No 20
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.6e-40 Score=288.32 Aligned_cols=216 Identities=33% Similarity=0.562 Sum_probs=196.3
Q ss_pred cccCCccc-CCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCC
Q 043110 32 FASCCFSS-LGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSG 110 (316)
Q Consensus 32 ~~~~~f~~-~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~ 110 (316)
...++|++ ++-.+++++.+ ++.||.+|+|+|++|||.+++|+|++..|+||+|||++|++|.+-++..+........+
T Consensus 216 nP~ctFddAFq~~pevmenI-kK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~ 294 (629)
T KOG0336|consen 216 NPVCTFDDAFQCYPEVMENI-KKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNG 294 (629)
T ss_pred CCcCcHHHHHhhhHHHHHHH-HhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCC
Confidence 35578875 47899999999 77899999999999999999999999999999999999999999888877776667788
Q ss_pred eeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEE
Q 043110 111 TFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWI 190 (316)
Q Consensus 111 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~l 190 (316)
+.+|+++|||+|+.|+.-.+.+.. +...+..|++||.+...+.+.+.++.+|+++||++|.++... +.+.+..+.+|
T Consensus 295 p~~lvl~ptreLalqie~e~~kys--yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~-n~i~l~siTYl 371 (629)
T KOG0336|consen 295 PGVLVLTPTRELALQIEGEVKKYS--YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMD-NVINLASITYL 371 (629)
T ss_pred CceEEEeccHHHHHHHHhHHhHhh--hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhc-CeeeeeeeEEE
Confidence 999999999999999988777664 456788899999999999999999999999999999998776 67788999999
Q ss_pred EEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCC
Q 043110 191 IFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKK 266 (316)
Q Consensus 191 ViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~ 266 (316)
|+||||+|+|+||.++++.|+-.+.. .+|+++.|||+|+.|..++..++++|+.+.+..-.
T Consensus 372 VlDEADrMLDMgFEpqIrkilldiRP---------------DRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLd 432 (629)
T KOG0336|consen 372 VLDEADRMLDMGFEPQIRKILLDIRP---------------DRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLD 432 (629)
T ss_pred EecchhhhhcccccHHHHHHhhhcCC---------------cceeeeecccCchHHHHHHHHhhhCceEEEecccc
Confidence 99999999999999999999988876 99999999999999999999999999988776654
No 21
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.9e-38 Score=306.58 Aligned_cols=221 Identities=33% Similarity=0.495 Sum_probs=191.8
Q ss_pred CCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCC-CCCCCeeE
Q 043110 35 CCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRI-DRSSGTFA 113 (316)
Q Consensus 35 ~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~-~~~~~~~~ 113 (316)
.+|++++|++.+++.| +++||..|||+|.++||.+++|+|++++||||||||++|++|+++.+....... ....++++
T Consensus 9 ~~f~~l~l~~~l~~~L-~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ra 87 (572)
T PRK04537 9 LTFSSFDLHPALLAGL-ESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA 87 (572)
T ss_pred CChhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 4799999999999999 778999999999999999999999999999999999999999999886532211 12235789
Q ss_pred EEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEe
Q 043110 114 LVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFD 193 (316)
Q Consensus 114 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViD 193 (316)
|||+||+|||.|+++.+..++...+ +.+..++||.....+...+..+++|+|+||++|++++.....+.+..+++||||
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~~-i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViD 166 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADLG-LRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLD 166 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCC-ceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEec
Confidence 9999999999999999999987654 667788899988888888888899999999999999987556677889999999
Q ss_pred cchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCCCCCC
Q 043110 194 EADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPED 270 (316)
Q Consensus 194 Ead~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~~~~~ 270 (316)
|||+|++++|...+..++..++... .+|+++||||++..+..+...++.+|..+.+........
T Consensus 167 EAh~lld~gf~~~i~~il~~lp~~~-------------~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~ 230 (572)
T PRK04537 167 EADRMFDLGFIKDIRFLLRRMPERG-------------TRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAA 230 (572)
T ss_pred CHHHHhhcchHHHHHHHHHhccccc-------------CceEEEEeCCccHHHHHHHHHHhcCCcEEEecccccccc
Confidence 9999999999999999999987522 579999999999999999999999998877766554433
No 22
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=3.3e-38 Score=285.35 Aligned_cols=243 Identities=28% Similarity=0.480 Sum_probs=210.8
Q ss_pred CCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCC---CCCCCCe
Q 043110 35 CCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPR---IDRSSGT 111 (316)
Q Consensus 35 ~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~---~~~~~~~ 111 (316)
.+|++.+++.++++.+ .+.||..|+|+|..+||..++.+|+|..|.||||||++|++|++..+.+..+. .+...|+
T Consensus 245 rnwEE~~~P~e~l~~I-~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gp 323 (673)
T KOG0333|consen 245 RNWEESGFPLELLSVI-KKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGP 323 (673)
T ss_pred cChhhcCCCHHHHHHH-HhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCc
Confidence 6899999999999988 77899999999999999999999999999999999999999999998775532 2455799
Q ss_pred eEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEE
Q 043110 112 FALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWII 191 (316)
Q Consensus 112 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lV 191 (316)
+++|++|||+|++|+.+.-.+++...+ ..+..++||....++--.+..+|+|+|+|||+|.+.+.+ ..+.++.+.++|
T Consensus 324 yaiilaptReLaqqIeeEt~kf~~~lg-~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Len-r~lvl~qctyvv 401 (673)
T KOG0333|consen 324 YAIILAPTRELAQQIEEETNKFGKPLG-IRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLEN-RYLVLNQCTYVV 401 (673)
T ss_pred eeeeechHHHHHHHHHHHHHHhccccc-ceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHH-HHHHhccCceEe
Confidence 999999999999999999999998876 677788899999998888999999999999999999987 566778999999
Q ss_pred EecchhhhcCCcHHHHHHHHHHhccCcccccCCC----------CccccccceEEEEeeecchhHHHHHHHhcCCCEEEE
Q 043110 192 FDEADRILELGFGKEIEEILDILGSRNIASIGEG----------NEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIG 261 (316)
Q Consensus 192 iDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~----------~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~ 261 (316)
+||||+|+|+||.+++..++..+|..+....... ...+..-+|+++||||+|+.+..+++.+|++|+++.
T Consensus 402 ldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vt 481 (673)
T KOG0333|consen 402 LDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVT 481 (673)
T ss_pred ccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEE
Confidence 9999999999999999999999998654422211 122334489999999999999999999999999999
Q ss_pred cCCCCCCCCCCCccccccc
Q 043110 262 LDEKKFPEDKSNVHFGSLE 280 (316)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~ 280 (316)
+.....+.....+++.-+.
T Consensus 482 ig~~gk~~~rveQ~v~m~~ 500 (673)
T KOG0333|consen 482 IGSAGKPTPRVEQKVEMVS 500 (673)
T ss_pred eccCCCCccchheEEEEec
Confidence 8887766666665555444
No 23
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=9.8e-40 Score=285.91 Aligned_cols=223 Identities=29% Similarity=0.517 Sum_probs=200.0
Q ss_pred ccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCC--CCCCCCC
Q 043110 33 ASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSP--RIDRSSG 110 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~--~~~~~~~ 110 (316)
...+|.++.++..+++.|++ .|+.+|||+|-+.+|.+++|+|.+..|-||||||++|++|++.....+.- ...++.|
T Consensus 168 PIksF~eMKFP~~~L~~lk~-KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EG 246 (610)
T KOG0341|consen 168 PIKSFKEMKFPKPLLRGLKK-KGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEG 246 (610)
T ss_pred chhhhhhccCCHHHHHHHHh-cCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCC
Confidence 44689999999999999954 69999999999999999999999999999999999999999887665443 3456789
Q ss_pred eeEEEEeCChHHHHHHHHHHHHHHhhc-----CCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccC
Q 043110 111 TFALVLVPTSELCLLVYEILQKLLHRF-----RWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHT 185 (316)
Q Consensus 111 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~ 185 (316)
+..||+||+||||.|.++.+..+...+ +.+...+++||.....+...++.+.+|+|+|||||.+++.. +...+.
T Consensus 247 P~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K-K~~sLd 325 (610)
T KOG0341|consen 247 PYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK-KIMSLD 325 (610)
T ss_pred CeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH-hhccHH
Confidence 999999999999999999998887543 44667788999999999999999999999999999999987 666777
Q ss_pred ceeEEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCC
Q 043110 186 NLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265 (316)
Q Consensus 186 ~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 265 (316)
-+++|++||||+|+|+||.++++.|+..+.. .+|+++||||||..++.|++..+..|+.|.+...
T Consensus 326 ~CRyL~lDEADRmiDmGFEddir~iF~~FK~---------------QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRA 390 (610)
T KOG0341|consen 326 ACRYLTLDEADRMIDMGFEDDIRTIFSFFKG---------------QRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRA 390 (610)
T ss_pred HHHHhhhhhHHHHhhccchhhHHHHHHHHhh---------------hhheeeeeccccHHHHHHHHhhcccceEEecccc
Confidence 7899999999999999999999999999988 9999999999999999999999999999999887
Q ss_pred CCCCCCC
Q 043110 266 KFPEDKS 272 (316)
Q Consensus 266 ~~~~~~~ 272 (316)
..++-..
T Consensus 391 GAAsldV 397 (610)
T KOG0341|consen 391 GAASLDV 397 (610)
T ss_pred cccchhH
Confidence 6555433
No 24
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=7.1e-37 Score=288.80 Aligned_cols=211 Identities=36% Similarity=0.564 Sum_probs=186.7
Q ss_pred CcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEE
Q 043110 36 CFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALV 115 (316)
Q Consensus 36 ~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~li 115 (316)
+|++++|++.+++.| +++||.+|+++|.++||.++.|+|++++||||+|||++|++|+++.+..... ....++++||
T Consensus 2 ~f~~l~l~~~l~~~l-~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~--~~~~~~~~li 78 (434)
T PRK11192 2 TFSELELDESLLEAL-QDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR--RKSGPPRILI 78 (434)
T ss_pred CHhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc--cCCCCceEEE
Confidence 699999999999999 7789999999999999999999999999999999999999999999875321 1234578999
Q ss_pred EeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecc
Q 043110 116 LVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEA 195 (316)
Q Consensus 116 l~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEa 195 (316)
++||++|+.|+++.+..++...+ ..+..+.||.....+...+..+++|+|+||++|++++.. ..+.+.++++||+|||
T Consensus 79 l~Pt~eLa~Q~~~~~~~l~~~~~-~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~-~~~~~~~v~~lViDEa 156 (434)
T PRK11192 79 LTPTRELAMQVADQARELAKHTH-LDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE-ENFDCRAVETLILDEA 156 (434)
T ss_pred ECCcHHHHHHHHHHHHHHHccCC-cEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc-CCcCcccCCEEEEECH
Confidence 99999999999999999987655 667778888888888888888899999999999999986 5566788999999999
Q ss_pred hhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecch-hHHHHHHHhcCCCEEEEcCCCC
Q 043110 196 DRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNE-KVNHLTKISLETPVLIGLDEKK 266 (316)
Q Consensus 196 d~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~-~v~~~~~~~l~~p~~i~~~~~~ 266 (316)
|+|++++|...+..+...++. ..|+++||||++. .+..+....+.+|+.+.+....
T Consensus 157 h~~l~~~~~~~~~~i~~~~~~---------------~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~ 213 (434)
T PRK11192 157 DRMLDMGFAQDIETIAAETRW---------------RKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSR 213 (434)
T ss_pred HHHhCCCcHHHHHHHHHhCcc---------------ccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCc
Confidence 999999999999999988876 7899999999985 5888999999999998876654
No 25
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.2e-38 Score=285.29 Aligned_cols=232 Identities=31% Similarity=0.475 Sum_probs=197.8
Q ss_pred CCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCC--C--CCCCC
Q 043110 35 CCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPR--I--DRSSG 110 (316)
Q Consensus 35 ~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~--~--~~~~~ 110 (316)
.+|++..+.+.+...+ ++.||..|||+|+.+||.+..|+|++++|+||||||.+|++|++..+...... . .....
T Consensus 74 ~~f~~~~l~~~l~~ni-~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~ 152 (482)
T KOG0335|consen 74 PTFDEAILGEALAGNI-KRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVY 152 (482)
T ss_pred ccccccchhHHHhhcc-ccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCC
Confidence 3788888999999998 77899999999999999999999999999999999999999999999876542 1 11235
Q ss_pred eeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEE
Q 043110 111 TFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWI 190 (316)
Q Consensus 111 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~l 190 (316)
+++||++||||||.|+++..+++.-. ..+.....+||.+...+.+.+.++|||+|+|||+|.+++.. +.+.+.+++++
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~-s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~-g~i~l~~~k~~ 230 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYL-SGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIER-GKISLDNCKFL 230 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhccc-ccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhc-ceeehhhCcEE
Confidence 89999999999999999999998743 55778889999999999999999999999999999999987 67778899999
Q ss_pred EEecchhhhc-CCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCC-CEEEEcCCCCCC
Q 043110 191 IFDEADRILE-LGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLET-PVLIGLDEKKFP 268 (316)
Q Consensus 191 ViDEad~l~~-~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~-p~~i~~~~~~~~ 268 (316)
||||||+|+| ++|.++|+.|+..... .....+|+++||||+|.++..++..++.+ .+++.+......
T Consensus 231 vLDEADrMlD~mgF~p~Ir~iv~~~~~-----------~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~ 299 (482)
T KOG0335|consen 231 VLDEADRMLDEMGFEPQIRKIVEQLGM-----------PPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGST 299 (482)
T ss_pred EecchHHhhhhccccccHHHHhcccCC-----------CCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccc
Confidence 9999999999 8999999999988753 22347999999999999999999999886 777776665544
Q ss_pred CCCCCccccccc
Q 043110 269 EDKSNVHFGSLE 280 (316)
Q Consensus 269 ~~~~~~~~~~~~ 280 (316)
.....+....+.
T Consensus 300 ~~ni~q~i~~V~ 311 (482)
T KOG0335|consen 300 SENITQKILFVN 311 (482)
T ss_pred cccceeEeeeec
Confidence 444444444443
No 26
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.5e-36 Score=284.18 Aligned_cols=229 Identities=31% Similarity=0.443 Sum_probs=190.6
Q ss_pred cccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCC-CCCC
Q 043110 32 FASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRID-RSSG 110 (316)
Q Consensus 32 ~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~-~~~~ 110 (316)
.....|.+++|++.++++| .++||..|+++|.++|+.+++|+|+++.+|||||||++|++|+++.+........ ....
T Consensus 84 ~~~~~f~~~~l~~~l~~~l-~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~ 162 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAI-HDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGE 162 (475)
T ss_pred cCCCCHhHCCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCC
Confidence 3446799999999999999 6689999999999999999999999999999999999999999999876432211 1125
Q ss_pred eeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHh-cCCcEEEeCcHHHHHHHhcCCccccCceeE
Q 043110 111 TFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLR-KGISILVATPGHLLDHLKHTSSFLHTNLRW 189 (316)
Q Consensus 111 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~ 189 (316)
+++|||+||++|+.|+++.++.+....+ ..+..+.||.+...+...+. ..++|+|+||++|++++.. ....++++++
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~-~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~-~~~~l~~l~~ 240 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTG-LNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQR-GEVHLDMVEV 240 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCC-CEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCcccccCce
Confidence 7899999999999999999999887654 55666778877776666654 4589999999999998876 4566789999
Q ss_pred EEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCCCCC
Q 043110 190 IIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPE 269 (316)
Q Consensus 190 lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~~~~ 269 (316)
|||||||++++++|...+..++..++... .+|++++|||++.++.++++.++.+|..+.+..+....
T Consensus 241 lViDEah~l~~~~~~~~l~~i~~~~~~~~-------------~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 307 (475)
T PRK01297 241 MVLDEADRMLDMGFIPQVRQIIRQTPRKE-------------ERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVAS 307 (475)
T ss_pred EEechHHHHHhcccHHHHHHHHHhCCCCC-------------CceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCC
Confidence 99999999999999999999998886421 57999999999999999999999999998877665444
Q ss_pred CCCCccc
Q 043110 270 DKSNVHF 276 (316)
Q Consensus 270 ~~~~~~~ 276 (316)
.....++
T Consensus 308 ~~~~~~~ 314 (475)
T PRK01297 308 DTVEQHV 314 (475)
T ss_pred CcccEEE
Confidence 4333333
No 27
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-37 Score=274.51 Aligned_cols=227 Identities=36% Similarity=0.574 Sum_probs=202.6
Q ss_pred cCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeE
Q 043110 34 SCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 113 (316)
Q Consensus 34 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 113 (316)
...|+++||+..+.+++.+ -||+.|+|+|++.||.+++|+|++..|-||||||.||++|+++.+.... ..|.++
T Consensus 20 ~g~fqsmgL~~~v~raI~k-kg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-----~~g~Ra 93 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHK-KGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-----QTGLRA 93 (529)
T ss_pred CCCccccCCCHHHHHHHHH-hhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-----ccccce
Confidence 6889999999999999955 4999999999999999999999999999999999999999999998743 357899
Q ss_pred EEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEe
Q 043110 114 LVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFD 193 (316)
Q Consensus 114 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViD 193 (316)
+++.|||+|+.|..+..+.++...+ ....+++||....++...+..++|||++||+++..+... -.+.++.+.|+|+|
T Consensus 94 lilsptreLa~qtlkvvkdlgrgt~-lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~ve-m~l~l~sveyVVfd 171 (529)
T KOG0337|consen 94 LILSPTRELALQTLKVVKDLGRGTK-LRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVE-MTLTLSSVEYVVFD 171 (529)
T ss_pred eeccCcHHHHHHHHHHHHHhccccc-hhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehh-eeccccceeeeeeh
Confidence 9999999999999999999997654 677788999999999999999999999999999887765 33677899999999
Q ss_pred cchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCCCCCCCCC
Q 043110 194 EADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKSN 273 (316)
Q Consensus 194 Ead~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~~~~~~~~ 273 (316)
|||+++++||.+++..++.+++. .+|+++||||+|..+..+++..+.+|+.|.++.+....+...
T Consensus 172 Eadrlfemgfqeql~e~l~rl~~---------------~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk 236 (529)
T KOG0337|consen 172 EADRLFEMGFQEQLHEILSRLPE---------------SRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLK 236 (529)
T ss_pred hhhHHHhhhhHHHHHHHHHhCCC---------------cceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhh
Confidence 99999999999999999999998 889999999999999999999999999999887765555555
Q ss_pred cccccccchh
Q 043110 274 VHFGSLESDV 283 (316)
Q Consensus 274 ~~~~~~~~~~ 283 (316)
+.+....++.
T Consensus 237 ~~f~~~~~a~ 246 (529)
T KOG0337|consen 237 VRFFRVRKAE 246 (529)
T ss_pred hheeeeccHH
Confidence 5555444443
No 28
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-36 Score=295.59 Aligned_cols=227 Identities=35% Similarity=0.582 Sum_probs=200.1
Q ss_pred cCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeE
Q 043110 34 SCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 113 (316)
Q Consensus 34 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 113 (316)
..+|.+.|++..++..+ +++||..|+|||.+|||+++.|+|+|..|.||||||++|++|++.++..+.+ ...+.||.+
T Consensus 364 v~sW~q~gl~~~il~tl-kkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~-~~~gdGPi~ 441 (997)
T KOG0334|consen 364 VTSWTQCGLSSKILETL-KKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRP-LEEGDGPIA 441 (997)
T ss_pred cchHhhCCchHHHHHHH-HHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCC-hhhCCCceE
Confidence 36899999999999999 8899999999999999999999999999999999999999999988766544 345569999
Q ss_pred EEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcC--CccccCceeEEE
Q 043110 114 LVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHT--SSFLHTNLRWII 191 (316)
Q Consensus 114 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~--~~~~~~~l~~lV 191 (316)
||++|||+|+.|+++.++.++.. ..+.+.+++||....++...+..++.|+|||||+..+.+..+ +...+.++.++|
T Consensus 442 li~aPtrela~QI~r~~~kf~k~-l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv 520 (997)
T KOG0334|consen 442 LILAPTRELAMQIHREVRKFLKL-LGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLV 520 (997)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhh-cCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceee
Confidence 99999999999999999999987 457888999999999999999999999999999999988543 233555667999
Q ss_pred EecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCCCCCCC
Q 043110 192 FDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDK 271 (316)
Q Consensus 192 iDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~~~~~~ 271 (316)
+||||+|++++|.+++..|++.++. .+|+++||||+|..++.+++..++.|+.|.+.....-...
T Consensus 521 ~deaDrmfdmgfePq~~~Ii~nlrp---------------drQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~ 585 (997)
T KOG0334|consen 521 LDEADRMFDMGFEPQITRILQNLRP---------------DRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKE 585 (997)
T ss_pred echhhhhheeccCcccchHHhhcch---------------hhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEecc
Confidence 9999999999999999999999977 9999999999999999999999999999988866544444
Q ss_pred CCccccc
Q 043110 272 SNVHFGS 278 (316)
Q Consensus 272 ~~~~~~~ 278 (316)
..+.+.+
T Consensus 586 V~q~v~V 592 (997)
T KOG0334|consen 586 VTQVVRV 592 (997)
T ss_pred ceEEEEE
Confidence 4443333
No 29
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=9.6e-35 Score=271.76 Aligned_cols=212 Identities=27% Similarity=0.433 Sum_probs=184.3
Q ss_pred cCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeE
Q 043110 34 SCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 113 (316)
Q Consensus 34 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 113 (316)
..+|+++++++.+.++| .++||..|+|+|.++|+.+++|+|++++||||||||++|++|+++.+... ..+.++
T Consensus 27 ~~~~~~l~l~~~~~~~l-~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~------~~~~~~ 99 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGI-YSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD------LNACQA 99 (401)
T ss_pred cCCHhhCCCCHHHHHHH-HHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC------CCCceE
Confidence 47899999999999999 77899999999999999999999999999999999999999999887531 235679
Q ss_pred EEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEe
Q 043110 114 LVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFD 193 (316)
Q Consensus 114 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViD 193 (316)
||++|+++|+.|+.+.+..++.... ..+....|+.....+...+..+++|+|+||+++.+.+.. ....+++++++|+|
T Consensus 100 lil~Pt~~L~~Q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~i~lvViD 177 (401)
T PTZ00424 100 LILAPTRELAQQIQKVVLALGDYLK-VRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDK-RHLRVDDLKLFILD 177 (401)
T ss_pred EEECCCHHHHHHHHHHHHHHhhhcC-ceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHh-CCcccccccEEEEe
Confidence 9999999999999999999886543 445566777777777778888899999999999998876 44567899999999
Q ss_pred cchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCCCCC
Q 043110 194 EADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPE 269 (316)
Q Consensus 194 Ead~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~~~~ 269 (316)
|||++++.+|...+..++..++. ..|++++|||+|+.+..+...++.+|..+.+.......
T Consensus 178 Eah~~~~~~~~~~~~~i~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (401)
T PTZ00424 178 EADEMLSRGFKGQIYDVFKKLPP---------------DVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTL 238 (401)
T ss_pred cHHHHHhcchHHHHHHHHhhCCC---------------CcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCccc
Confidence 99999999999999999888876 88999999999999999999999999887766554333
No 30
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-36 Score=251.87 Aligned_cols=226 Identities=24% Similarity=0.410 Sum_probs=199.6
Q ss_pred cccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCe
Q 043110 32 FASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 111 (316)
Q Consensus 32 ~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~ 111 (316)
+.+..|.++-|.|++++++ -.+||++|+.+|.+|||...-|.|++++|.+|.|||.+|+++-++.+.- ....+
T Consensus 39 ihssgfrdfllkpellrai-vdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiep------v~g~v 111 (387)
T KOG0329|consen 39 IHSSGFRDFLLKPELLRAI-VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP------VDGQV 111 (387)
T ss_pred EeccchhhhhcCHHHHHHH-HhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCC------CCCeE
Confidence 3456799999999999999 6689999999999999999999999999999999999999988887753 12356
Q ss_pred eEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEE
Q 043110 112 FALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWII 191 (316)
Q Consensus 112 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lV 191 (316)
-+|++|.|||||-|+.+....+..+++...+.+++||.........+.+.|+|+|+|||+++.+.++ +.+.+++++.+|
T Consensus 112 svlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~-k~l~lk~vkhFv 190 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRN-RSLNLKNVKHFV 190 (387)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHh-ccCchhhcceee
Confidence 7999999999999999999999999999999999999999988888999999999999999999987 778889999999
Q ss_pred EecchhhhcC-CcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCC-CCC
Q 043110 192 FDEADRILEL-GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKK-FPE 269 (316)
Q Consensus 192 iDEad~l~~~-~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~-~~~ 269 (316)
+||||.|+++ ..+.++..|++..|. ..|+++||||++++++..++.+|++|..|.++++. ...
T Consensus 191 lDEcdkmle~lDMrRDvQEifr~tp~---------------~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtL 255 (387)
T KOG0329|consen 191 LDECDKMLEQLDMRRDVQEIFRMTPH---------------EKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTL 255 (387)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcCcc---------------cceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhh
Confidence 9999999976 678889999988887 89999999999999999999999999999988764 233
Q ss_pred CCCCccccccc
Q 043110 270 DKSNVHFGSLE 280 (316)
Q Consensus 270 ~~~~~~~~~~~ 280 (316)
....++|+.+.
T Consensus 256 HGLqQ~YvkLk 266 (387)
T KOG0329|consen 256 HGLQQYYVKLK 266 (387)
T ss_pred hhHHHHHHhhh
Confidence 33334444444
No 31
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=6.2e-34 Score=241.91 Aligned_cols=202 Identities=43% Similarity=0.688 Sum_probs=178.4
Q ss_pred cccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEE
Q 043110 37 FSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVL 116 (316)
Q Consensus 37 f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil 116 (316)
|+++++++.+.+.+ +++|+..|+++|+++++.+.+|+|+++.+|||+|||++|++|+++.+.... ...++++||+
T Consensus 1 ~~~~~~~~~i~~~l-~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~----~~~~~~viii 75 (203)
T cd00268 1 FEELGLSPELLRGI-YALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP----KKDGPQALIL 75 (203)
T ss_pred CCcCCCCHHHHHHH-HHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc----ccCCceEEEE
Confidence 78999999999999 568999999999999999999999999999999999999999999987742 1246789999
Q ss_pred eCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecch
Q 043110 117 VPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEAD 196 (316)
Q Consensus 117 ~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad 196 (316)
+|+++|+.|+.+.++.+.... ........|+.........+..+++|+|+||+.+.+.+.+. ...+.+++++|+||+|
T Consensus 76 ~p~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~l~~lIvDE~h 153 (203)
T cd00268 76 APTRELALQIAEVARKLGKHT-NLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERG-KLDLSKVKYLVLDEAD 153 (203)
T ss_pred cCCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC-CCChhhCCEEEEeChH
Confidence 999999999999999987653 45666777777776666666668899999999999988864 4667889999999999
Q ss_pred hhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEE
Q 043110 197 RILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260 (316)
Q Consensus 197 ~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i 260 (316)
.+.+.++...+..+++.++. .+|++++|||+++.+..++..++.+|+.|
T Consensus 154 ~~~~~~~~~~~~~~~~~l~~---------------~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 154 RMLDMGFEDQIREILKLLPK---------------DRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred HhhccChHHHHHHHHHhCCc---------------ccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 99988999999999998876 89999999999999999999999999987
No 32
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-35 Score=257.89 Aligned_cols=223 Identities=30% Similarity=0.485 Sum_probs=192.8
Q ss_pred CcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEE
Q 043110 36 CFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALV 115 (316)
Q Consensus 36 ~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~li 115 (316)
+|++++|.+++++.+ ..+||++|+.+|++||+.+..|.|+.+++++|+|||.+|.+++++.+... ....+||+
T Consensus 27 sfddm~L~e~LLrgi-y~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~------~ke~qali 99 (397)
T KOG0327|consen 27 SFDDMNLKESLLRGI-YAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS------VKETQALI 99 (397)
T ss_pred hhhhcCCCHHHHhHH-HhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc------hHHHHHHH
Confidence 899999999999999 77899999999999999999999999999999999999999999987432 23456999
Q ss_pred EeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHH-hcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEec
Q 043110 116 LVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARL-RKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDE 194 (316)
Q Consensus 116 l~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDE 194 (316)
++|||+|+.|+.++.+.++...+ ..+..+.||.+...+...+ ...++|+|+|||++.+.+... .+....++++|+||
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~-~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlDE 177 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMD-VSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLDE 177 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccc-eeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc-cccccceeEEeecc
Confidence 99999999999999999887654 5556666777766444444 455899999999999999874 66667899999999
Q ss_pred chhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCCCCCCCCCc
Q 043110 195 ADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKSNV 274 (316)
Q Consensus 195 ad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~~~~~~~~~ 274 (316)
||.++..||.+++..|++.++. +.|++++|||+|+++..+.+.++++|+.|.+..++.....+.+
T Consensus 178 aDEmLs~gfkdqI~~if~~lp~---------------~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq 242 (397)
T KOG0327|consen 178 ADEMLSRGFKDQIYDIFQELPS---------------DVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQ 242 (397)
T ss_pred hHhhhccchHHHHHHHHHHcCc---------------chhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheee
Confidence 9999999999999999999998 8899999999999999999999999999999887766555555
Q ss_pred ccccccch
Q 043110 275 HFGSLESD 282 (316)
Q Consensus 275 ~~~~~~~~ 282 (316)
.|..+..+
T Consensus 243 ~~i~v~k~ 250 (397)
T KOG0327|consen 243 FYINVEKE 250 (397)
T ss_pred eeeecccc
Confidence 55555443
No 33
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=2.8e-35 Score=271.79 Aligned_cols=226 Identities=27% Similarity=0.397 Sum_probs=204.0
Q ss_pred ccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCee
Q 043110 33 ASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 112 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 112 (316)
...+|+++.|...++..| ++.+|..||++|..|||.++.+.|+|++|..|+|||++|.+.+++.+.. +...++
T Consensus 23 ~~~~fe~l~l~r~vl~gl-rrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~------~~~~~q 95 (980)
T KOG4284|consen 23 CTPGFEQLALWREVLLGL-RRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS------RSSHIQ 95 (980)
T ss_pred CCCCHHHHHHHHHHHHHH-HhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc------ccCcce
Confidence 446899999999999999 6679999999999999999999999999999999999999888887754 345778
Q ss_pred EEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEE
Q 043110 113 ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIF 192 (316)
Q Consensus 113 ~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lVi 192 (316)
++||+||||++.|+.+.+..++..+....|.+++||+.......++. .++|+||||||+..++.. ..+..++++++|+
T Consensus 96 ~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el-~~~n~s~vrlfVL 173 (980)
T KOG4284|consen 96 KVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVEL-GAMNMSHVRLFVL 173 (980)
T ss_pred eEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHh-cCCCccceeEEEe
Confidence 99999999999999999999999998999999999999888777765 479999999999999886 6778899999999
Q ss_pred ecchhhhcC-CcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCCCCCCC
Q 043110 193 DEADRILEL-GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDK 271 (316)
Q Consensus 193 DEad~l~~~-~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~~~~~~ 271 (316)
||||.|++. .|+++++.|++.+|. .+|++.||||.|.++.++...+|++|..|....+....-.
T Consensus 174 DEADkL~~t~sfq~~In~ii~slP~---------------~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~G 238 (980)
T KOG4284|consen 174 DEADKLMDTESFQDDINIIINSLPQ---------------IRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFG 238 (980)
T ss_pred ccHHhhhchhhHHHHHHHHHHhcch---------------hheeeEEeccCchhHHHHHHHHhcccceeecccCCceeec
Confidence 999999994 699999999999998 9999999999999999999999999999999888766666
Q ss_pred CCcccccccch
Q 043110 272 SNVHFGSLESD 282 (316)
Q Consensus 272 ~~~~~~~~~~~ 282 (316)
..+++..+++.
T Consensus 239 ikQyv~~~~s~ 249 (980)
T KOG4284|consen 239 IKQYVVAKCSP 249 (980)
T ss_pred hhheeeeccCC
Confidence 66666666543
No 34
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-35 Score=265.89 Aligned_cols=199 Identities=32% Similarity=0.481 Sum_probs=171.7
Q ss_pred CCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCC-CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCC-------C
Q 043110 35 CCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSG-RDVLVNAATGTGKTVAYLAPIINHLQSYSPRI-------D 106 (316)
Q Consensus 35 ~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~-------~ 106 (316)
.-|..++|+.+++++| ..+||.+||+||..++|++..| .|++..|.||||||+||-+|+++.+....... .
T Consensus 181 sAW~~l~lp~~iL~aL-~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~ 259 (731)
T KOG0347|consen 181 SAWKNLFLPMEILRAL-SNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSA 259 (731)
T ss_pred HHHhcCCCCHHHHHHH-HhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHh
Confidence 4588889999999999 7899999999999999999999 69999999999999999999999665432211 1
Q ss_pred CCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCcc--cc
Q 043110 107 RSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSF--LH 184 (316)
Q Consensus 107 ~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~--~~ 184 (316)
+...+.+||++||||||.|+.+-+..++.. ..+.+..+.||.....+.+.++..++|||+|||||+.++...... .+
T Consensus 260 k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~-t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~ 338 (731)
T KOG0347|consen 260 KYVKPIALVVTPTRELAHQVKQHLKAIAEK-TQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNF 338 (731)
T ss_pred ccCcceeEEecChHHHHHHHHHHHHHhccc-cCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhh
Confidence 122335999999999999999999998876 457788899999999999999999999999999999999876542 56
Q ss_pred CceeEEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchh
Q 043110 185 TNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEK 245 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~ 245 (316)
+++++||+||||+|++.|+...+..|++.|.. ++.+.++|++.||||++-.
T Consensus 339 k~vkcLVlDEaDRmvekghF~Els~lL~~L~e----------~~~~~qrQTlVFSATlt~~ 389 (731)
T KOG0347|consen 339 KKVKCLVLDEADRMVEKGHFEELSKLLKHLNE----------EQKNRQRQTLVFSATLTLV 389 (731)
T ss_pred hhceEEEEccHHHHhhhccHHHHHHHHHHhhh----------hhcccccceEEEEEEeehh
Confidence 78999999999999999999999999999863 4556689999999998743
No 35
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-33 Score=250.33 Aligned_cols=220 Identities=33% Similarity=0.477 Sum_probs=178.2
Q ss_pred CcccCCCCHHHHHH----------HHHHcCCCCCcHHHHHHHHHHh---------CCCcEEEEcCCCCchHHHHHHHHHH
Q 043110 36 CFSSLGLDSTLCDQ----------LRERLGFEAPTKVQAQAIPVIL---------SGRDVLVNAATGTGKTVAYLAPIIN 96 (316)
Q Consensus 36 ~f~~~~l~~~l~~~----------l~~~~g~~~p~~~Q~~~i~~il---------~g~d~li~a~TGsGKT~~~~lp~l~ 96 (316)
-|+.++++...... + .++++.+.+|+|..++|.++ .++|+.+.||||||||++|.+|+++
T Consensus 128 ~~s~l~~se~k~~~d~lea~~~q~l-~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ 206 (620)
T KOG0350|consen 128 IFSVLGKSEMKNLEDTLEATIDQLL-VKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQ 206 (620)
T ss_pred eeeccchhHHHHHHHHHHHHHHHHH-HHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHH
Confidence 46666666654443 6 56899999999999999986 2579999999999999999999999
Q ss_pred HhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcC-----CcEEEeCcHH
Q 043110 97 HLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKG-----ISILVATPGH 171 (316)
Q Consensus 97 ~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~IlV~Tp~~ 171 (316)
.+....- ...+||||+||++|+.|+++.+..+....+ +.++...|..+..++...+.+. .||+|+||||
T Consensus 207 ~L~~R~v-----~~LRavVivPtr~L~~QV~~~f~~~~~~tg-L~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGR 280 (620)
T KOG0350|consen 207 LLSSRPV-----KRLRAVVIVPTRELALQVYDTFKRLNSGTG-LAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGR 280 (620)
T ss_pred HHccCCc-----cceEEEEEeeHHHHHHHHHHHHHHhccCCc-eEEEecccccchHHHHHHHhcCCCccccceEEcCchH
Confidence 9977432 357899999999999999999999998766 4467777888888888888765 3899999999
Q ss_pred HHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhccCcc--------cccCCC---------C--cccccc
Q 043110 172 LLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNI--------ASIGEG---------N--EVSNVK 232 (316)
Q Consensus 172 l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~--------~~~~~~---------~--~~~~~~ 232 (316)
|.+|+.+.+.+.+++++|+||||||+|++..|+.++..++..+..... ...+.. + ....+.
T Consensus 281 LVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~ 360 (620)
T KOG0350|consen 281 LVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPP 360 (620)
T ss_pred HHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCch
Confidence 999999989999999999999999999999999999988888765310 000000 0 112334
Q ss_pred ceEEEEeeecchhHHHHHHHhcCCCEEEEc
Q 043110 233 RQNLLLSATLNEKVNHLTKISLETPVLIGL 262 (316)
Q Consensus 233 ~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~ 262 (316)
.+.+.+|||++.+-..+...-++.|-...+
T Consensus 361 l~kL~~satLsqdP~Kl~~l~l~~Prl~~v 390 (620)
T KOG0350|consen 361 LWKLVFSATLSQDPSKLKDLTLHIPRLFHV 390 (620)
T ss_pred hHhhhcchhhhcChHHHhhhhcCCCceEEe
Confidence 568899999999999999999999955544
No 36
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.98 E-value=5.1e-31 Score=261.21 Aligned_cols=199 Identities=23% Similarity=0.313 Sum_probs=157.8
Q ss_pred CCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCCh
Q 043110 41 GLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTS 120 (316)
Q Consensus 41 ~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~ 120 (316)
.+++++.++| ++.||.+|+++|.++||.+++|+|+++.+|||||||++|++|+++.+... .++++|||+||+
T Consensus 20 ~l~~~l~~~L-~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~-------~~~~aL~l~Ptr 91 (742)
T TIGR03817 20 WAHPDVVAAL-EAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD-------PRATALYLAPTK 91 (742)
T ss_pred cCCHHHHHHH-HHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC-------CCcEEEEEcChH
Confidence 3899999999 67899999999999999999999999999999999999999999998652 357899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhc-CC--ccccCceeEEEEecchh
Q 043110 121 ELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKH-TS--SFLHTNLRWIIFDEADR 197 (316)
Q Consensus 121 ~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~-~~--~~~~~~l~~lViDEad~ 197 (316)
||+.|+.+.++.++ ...+.+....|+.. ..+...+..+++|+|+||+++...+.. .. ...+++++++||||||.
T Consensus 92 aLa~q~~~~l~~l~--~~~i~v~~~~Gdt~-~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~ 168 (742)
T TIGR03817 92 ALAADQLRAVRELT--LRGVRPATYDGDTP-TEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHS 168 (742)
T ss_pred HHHHHHHHHHHHhc--cCCeEEEEEeCCCC-HHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhh
Confidence 99999999999986 22344444444444 555567777899999999999754322 11 12367899999999999
Q ss_pred hhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEE
Q 043110 198 ILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260 (316)
Q Consensus 198 l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i 260 (316)
+.+ .|+..+..+++++.... .....++|++++|||+++... ++..++..|+.+
T Consensus 169 ~~g-~fg~~~~~il~rL~ri~--------~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~ 221 (742)
T TIGR03817 169 YRG-VFGSHVALVLRRLRRLC--------ARYGASPVFVLASATTADPAA-AASRLIGAPVVA 221 (742)
T ss_pred ccC-ccHHHHHHHHHHHHHHH--------HhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE
Confidence 977 48888888887775310 112236899999999998765 566777778655
No 37
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=6.7e-32 Score=235.74 Aligned_cols=226 Identities=23% Similarity=0.393 Sum_probs=191.4
Q ss_pred cccccccccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CcEEEEcCCCCchHHHHHHHHHHHhhhcCC
Q 043110 26 ETVKEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSG--RDVLVNAATGTGKTVAYLAPIINHLQSYSP 103 (316)
Q Consensus 26 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~ 103 (316)
+...++++..+|++++|.|++++++ ..|+|++|+.+|..|+|.++.. +|+|.+++.|+|||.||++.++.++.-.
T Consensus 81 dpnsPlyS~ksFeeL~LkPellkgl-y~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~-- 157 (477)
T KOG0332|consen 81 DPNSPLYSAKSFEELRLKPELLKGL-YAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD-- 157 (477)
T ss_pred CCCCCccccccHHhhCCCHHHHhHH-HHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc--
Confidence 3556778888999999999999999 6699999999999999999965 6899999999999999999999887542
Q ss_pred CCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccc
Q 043110 104 RIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFL 183 (316)
Q Consensus 104 ~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~ 183 (316)
...|+++.|+||||||.|+.+++.+++++. .+...+...+.....- .. -..+|+|+|||.+.+++...+...
T Consensus 158 ----~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~ita~yair~sk~~rG-~~--i~eqIviGTPGtv~Dlm~klk~id 229 (477)
T KOG0332|consen 158 ----VVVPQCICLAPTRELAPQTGEVVEEMGKFT-ELTASYAIRGSKAKRG-NK--LTEQIVIGTPGTVLDLMLKLKCID 229 (477)
T ss_pred ----ccCCCceeeCchHHHHHHHHHHHHHhcCce-eeeEEEEecCcccccC-Cc--chhheeeCCCccHHHHHHHHHhhC
Confidence 235679999999999999999999999876 4666666665521110 01 114799999999999999877888
Q ss_pred cCceeEEEEecchhhhcC-CcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEc
Q 043110 184 HTNLRWIIFDEADRILEL-GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGL 262 (316)
Q Consensus 184 ~~~l~~lViDEad~l~~~-~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~ 262 (316)
++.++.+|+||||.|++. ||+++-..|...+|+ ..|+++||||+...+.+++...+.+|..+.+
T Consensus 230 ~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~---------------~~QllLFSATf~e~V~~Fa~kivpn~n~i~L 294 (477)
T KOG0332|consen 230 LEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPR---------------NQQLLLFSATFVEKVAAFALKIVPNANVIIL 294 (477)
T ss_pred hhhceEEEecchhhhhhcccccccchhhhhhcCC---------------cceEEeeechhHHHHHHHHHHhcCCCceeee
Confidence 899999999999999986 899999999999997 8999999999999999999999999988888
Q ss_pred CCCCCCCCCCCcccc
Q 043110 263 DEKKFPEDKSNVHFG 277 (316)
Q Consensus 263 ~~~~~~~~~~~~~~~ 277 (316)
..++...+...+.+.
T Consensus 295 k~eel~L~~IkQlyv 309 (477)
T KOG0332|consen 295 KREELALDNIKQLYV 309 (477)
T ss_pred ehhhccccchhhhee
Confidence 877766665555444
No 38
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.97 E-value=6.1e-29 Score=204.78 Aligned_cols=168 Identities=35% Similarity=0.494 Sum_probs=140.3
Q ss_pred cHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCC
Q 043110 60 TKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRW 139 (316)
Q Consensus 60 ~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~ 139 (316)
||+|.++++.+.+|+++++.||||+|||++|++|+++.+.+. ...+++|++|+++|+.|+++.+..++.. ..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-------~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~ 72 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-------KDARVLIIVPTRALAEQQFERLRKFFSN-TN 72 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-------SSSEEEEEESSHHHHHHHHHHHHHHTTT-TT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-------CCceEEEEeecccccccccccccccccc-cc
Confidence 689999999999999999999999999999999999988763 1236999999999999999999998876 33
Q ss_pred ceeEEeeCCCChH-HHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhccCc
Q 043110 140 IVPGYVMGGGNRS-KEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRN 218 (316)
Q Consensus 140 ~~~~~~~~~~~~~-~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~ 218 (316)
.....++++.... .....+..+++|+|+||++|.+++..... .+.+++++|+||+|.+.++++...+..+++.+....
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~-~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~ 151 (169)
T PF00270_consen 73 VRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI-NISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFK 151 (169)
T ss_dssp SSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS-TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTT
T ss_pred cccccccccccccccccccccccccccccCcchhhcccccccc-ccccceeeccCcccccccccHHHHHHHHHHHhcCCC
Confidence 5556667777655 44555666799999999999999987444 556699999999999999889999999999875421
Q ss_pred ccccCCCCccccccceEEEEeeecchhHHHH
Q 043110 219 IASIGEGNEVSNVKRQNLLLSATLNEKVNHL 249 (316)
Q Consensus 219 ~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~ 249 (316)
+.|++++|||++++++++
T Consensus 152 -------------~~~~i~~SAT~~~~~~~~ 169 (169)
T PF00270_consen 152 -------------NIQIILLSATLPSNVEKL 169 (169)
T ss_dssp -------------TSEEEEEESSSTHHHHHH
T ss_pred -------------CCcEEEEeeCCChhHhhC
Confidence 589999999999877764
No 39
>PRK02362 ski2-like helicase; Provisional
Probab=99.96 E-value=8.1e-29 Score=247.25 Aligned_cols=187 Identities=24% Similarity=0.289 Sum_probs=153.0
Q ss_pred CcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEE
Q 043110 36 CFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPV-ILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 114 (316)
Q Consensus 36 ~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~-il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 114 (316)
.|++++|++.+++.+ +..||.+|+|+|.+|++. +..|+|++++||||||||++|.+|+++.+.. +.++|
T Consensus 2 ~~~~l~lp~~~~~~l-~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---------~~kal 71 (737)
T PRK02362 2 KIAELPLPEGVIEFY-EAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---------GGKAL 71 (737)
T ss_pred ChhhcCCCHHHHHHH-HhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---------CCcEE
Confidence 589999999999999 567999999999999998 7799999999999999999999999998853 45699
Q ss_pred EEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEec
Q 043110 115 VLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDE 194 (316)
Q Consensus 115 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDE 194 (316)
|++|+++||.|+++.++.+.. + ...+....|+...... ....++|+|+||+++..++++. ...+.+++++|+||
T Consensus 72 ~i~P~raLa~q~~~~~~~~~~-~-g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~-~~~l~~v~lvViDE 145 (737)
T PRK02362 72 YIVPLRALASEKFEEFERFEE-L-GVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNG-APWLDDITCVVVDE 145 (737)
T ss_pred EEeChHHHHHHHHHHHHHhhc-C-CCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcC-hhhhhhcCEEEEEC
Confidence 999999999999999987653 2 3455556665543322 2345799999999999988763 34467899999999
Q ss_pred chhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHH
Q 043110 195 ADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTK 251 (316)
Q Consensus 195 ad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~ 251 (316)
+|.+.+.+++..++.++..+... .+..|++++|||+++ ...++.
T Consensus 146 ~H~l~d~~rg~~le~il~rl~~~------------~~~~qii~lSATl~n-~~~la~ 189 (737)
T PRK02362 146 VHLIDSANRGPTLEVTLAKLRRL------------NPDLQVVALSATIGN-ADELAD 189 (737)
T ss_pred ccccCCCcchHHHHHHHHHHHhc------------CCCCcEEEEcccCCC-HHHHHH
Confidence 99999989999999998887642 126899999999985 344443
No 40
>PRK00254 ski2-like helicase; Provisional
Probab=99.96 E-value=2.5e-28 Score=243.17 Aligned_cols=185 Identities=24% Similarity=0.308 Sum_probs=154.4
Q ss_pred CcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEE
Q 043110 36 CFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPV-ILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 114 (316)
Q Consensus 36 ~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~-il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 114 (316)
+|+++++++.+.+.| ++.||.+|+|+|.++++. +++|+|+++++|||||||++|.+|+++.+.. .+.++|
T Consensus 2 ~~~~l~l~~~~~~~l-~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--------~~~~~l 72 (720)
T PRK00254 2 KVDELRVDERIKRVL-KERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--------EGGKAV 72 (720)
T ss_pred cHHHcCCCHHHHHHH-HhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--------cCCeEE
Confidence 588999999999999 668999999999999986 7899999999999999999999999998764 245699
Q ss_pred EEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEec
Q 043110 115 VLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDE 194 (316)
Q Consensus 115 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDE 194 (316)
||+|+++|+.|+++.++.+.. .+ ..+....|+...... ....++|+|+||+++..++.+ ....+++++++|+||
T Consensus 73 ~l~P~~aLa~q~~~~~~~~~~-~g-~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~-~~~~l~~l~lvViDE 146 (720)
T PRK00254 73 YLVPLKALAEEKYREFKDWEK-LG-LRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRH-GSSWIKDVKLVVADE 146 (720)
T ss_pred EEeChHHHHHHHHHHHHHHhh-cC-CEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhC-CchhhhcCCEEEEcC
Confidence 999999999999999887642 33 455566666554322 235689999999999888875 334568999999999
Q ss_pred chhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHH
Q 043110 195 ADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTK 251 (316)
Q Consensus 195 ad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~ 251 (316)
+|.+.+.+++..++.++..+.. ..|++++|||+++ ...++.
T Consensus 147 ~H~l~~~~rg~~le~il~~l~~---------------~~qiI~lSATl~n-~~~la~ 187 (720)
T PRK00254 147 IHLIGSYDRGATLEMILTHMLG---------------RAQILGLSATVGN-AEELAE 187 (720)
T ss_pred cCccCCccchHHHHHHHHhcCc---------------CCcEEEEEccCCC-HHHHHH
Confidence 9999998899999999998876 7899999999985 455555
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.96 E-value=6.9e-28 Score=243.25 Aligned_cols=190 Identities=25% Similarity=0.296 Sum_probs=150.8
Q ss_pred CCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChH
Q 043110 42 LDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSE 121 (316)
Q Consensus 42 l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~ 121 (316)
+++.+.+.+ +. +|..|+|+|.++||.+++|+|++++||||||||++|++|+++.+...........++++||++|+++
T Consensus 18 l~~~v~~~~-~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtra 95 (876)
T PRK13767 18 LRPYVREWF-KE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRA 95 (876)
T ss_pred cCHHHHHHH-HH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHH
Confidence 778888888 44 7889999999999999999999999999999999999999999875432222245788999999999
Q ss_pred HHHHHHHHHHHHHh-----------hcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCc-cccCceeE
Q 043110 122 LCLLVYEILQKLLH-----------RFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSS-FLHTNLRW 189 (316)
Q Consensus 122 L~~Q~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~-~~~~~l~~ 189 (316)
|+.|+++.+..... ......+....|+.........+.+.++|+|+||++|..++.+... ..+.++++
T Consensus 96 La~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~ 175 (876)
T PRK13767 96 LNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKW 175 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCE
Confidence 99999987664321 1123456667777777776667777899999999999887765322 24678999
Q ss_pred EEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecch
Q 043110 190 IIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNE 244 (316)
Q Consensus 190 lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~ 244 (316)
||+||+|.+.+..++..+..+++++... .....|.+++|||+++
T Consensus 176 VVIDE~H~l~~~~RG~~l~~~L~rL~~l-----------~~~~~q~IglSATl~~ 219 (876)
T PRK13767 176 VIVDEIHSLAENKRGVHLSLSLERLEEL-----------AGGEFVRIGLSATIEP 219 (876)
T ss_pred EEEechhhhccCccHHHHHHHHHHHHHh-----------cCCCCeEEEEecccCC
Confidence 9999999999888888887777776541 1236899999999975
No 42
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.95 E-value=5e-27 Score=230.03 Aligned_cols=197 Identities=18% Similarity=0.118 Sum_probs=151.9
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHhCCC-cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEE-EeCChHHHH
Q 043110 47 CDQLRERLGFEAPTKVQAQAIPVILSGR-DVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALV-LVPTSELCL 124 (316)
Q Consensus 47 ~~~l~~~~g~~~p~~~Q~~~i~~il~g~-d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~li-l~Pt~~L~~ 124 (316)
-+.+.+..||+ |+|+|.+++|.++.|+ ++++++|||||||.++.++++.. .. ....++.|| ++|||+|+.
T Consensus 5 ~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~------~~~~~~rLv~~vPtReLa~ 76 (844)
T TIGR02621 5 DEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI------GAKVPRRLVYVVNRRTVVD 76 (844)
T ss_pred HHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc------cccccceEEEeCchHHHHH
Confidence 44554557998 9999999999999998 58889999999999765544422 11 122344555 679999999
Q ss_pred HHHHHHHHHHhhcC----------------------CceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCcc
Q 043110 125 LVYEILQKLLHRFR----------------------WIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSF 182 (316)
Q Consensus 125 Q~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~ 182 (316)
|+++.+++++..+. .+.+..++||.....++..+..+++|||+|++ ++.+...+
T Consensus 77 Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D----~i~sr~L~ 152 (844)
T TIGR02621 77 QVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVD----MIGSRLLF 152 (844)
T ss_pred HHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHH----HHcCCccc
Confidence 99999999998652 26677889999999999999999999999954 44332210
Q ss_pred ---------------ccCceeEEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHH
Q 043110 183 ---------------LHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVN 247 (316)
Q Consensus 183 ---------------~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~ 247 (316)
.+.+++++|+|||| ++++|.+.+..|++.+... ....++|+++||||++.++.
T Consensus 153 ~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp----------~~~rprQtLLFSAT~p~ei~ 220 (844)
T TIGR02621 153 SGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRP----------PDFLPLRVVELTATSRTDGP 220 (844)
T ss_pred cccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccC----------cccccceEEEEecCCCccHH
Confidence 25789999999999 6789999999999975210 00013799999999999999
Q ss_pred HHHHHhcCCCEEEEcCCCCC
Q 043110 248 HLTKISLETPVLIGLDEKKF 267 (316)
Q Consensus 248 ~~~~~~l~~p~~i~~~~~~~ 267 (316)
.+...++.+|..+.+.....
T Consensus 221 ~l~~~~~~~p~~i~V~~~~l 240 (844)
T TIGR02621 221 DRTTLLSAEDYKHPVLKKRL 240 (844)
T ss_pred HHHHHHccCCceeecccccc
Confidence 99888998888777665443
No 43
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=4.2e-28 Score=223.25 Aligned_cols=220 Identities=28% Similarity=0.404 Sum_probs=174.3
Q ss_pred CCccc----CCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCC
Q 043110 35 CCFSS----LGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSG 110 (316)
Q Consensus 35 ~~f~~----~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~ 110 (316)
.+|++ ...++.+++.+ ...+|..|+|+|.+|+|.++.++|++.|+|||||||++|.+|+++++..... .+...|
T Consensus 132 ~~f~~lt~~~~~~~~ll~nl-~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~-~~~~~g 209 (593)
T KOG0344|consen 132 LSFSDLTYDYSMNKRLLENL-QELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ-EKHKVG 209 (593)
T ss_pred ccccccchhhhhcHHHHHhH-hhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc-ccCccc
Confidence 35554 46788999999 5679999999999999999999999999999999999999999999976543 234568
Q ss_pred eeEEEEeCChHHHHHHHHHHHHHHhh--cCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCC-ccccCce
Q 043110 111 TFALVLVPTSELCLLVYEILQKLLHR--FRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTS-SFLHTNL 187 (316)
Q Consensus 111 ~~~lil~Pt~~L~~Q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~-~~~~~~l 187 (316)
.+++|+.|+|+|+.|++..+.++... ........-+...............++|+|+||.++..++.... .+.++.+
T Consensus 210 l~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V 289 (593)
T KOG0344|consen 210 LRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKV 289 (593)
T ss_pred eEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhhee
Confidence 89999999999999999999988722 21111111111111112222223347899999999999997643 3577899
Q ss_pred eEEEEecchhhhcC-CcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCC
Q 043110 188 RWIIFDEADRILEL-GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKK 266 (316)
Q Consensus 188 ~~lViDEad~l~~~-~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~ 266 (316)
.++|+||||++++. .|..++..|+..+... ...+-+||||++..+.+.+...+.+++.|.++..+
T Consensus 290 ~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~--------------~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~ 355 (593)
T KOG0344|consen 290 EWLVVDEADLLFEPEFFVEQLADIYSACQSP--------------DIRVALFSATISVYVEEWAELIKSDLKRVIVGLRN 355 (593)
T ss_pred eeEeechHHhhhChhhHHHHHHHHHHHhcCc--------------chhhhhhhccccHHHHHHHHHhhccceeEEEecch
Confidence 99999999999999 8999999999988752 67788999999999999999999999988887765
Q ss_pred CCCC
Q 043110 267 FPED 270 (316)
Q Consensus 267 ~~~~ 270 (316)
....
T Consensus 356 sa~~ 359 (593)
T KOG0344|consen 356 SANE 359 (593)
T ss_pred hHhh
Confidence 4433
No 44
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.95 E-value=9.2e-27 Score=227.09 Aligned_cols=203 Identities=29% Similarity=0.356 Sum_probs=166.7
Q ss_pred CCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChH
Q 043110 42 LDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSE 121 (316)
Q Consensus 42 l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~ 121 (316)
|++.+++.+.++ |..|||.|.+|||.+.+|+|+++.||||||||+++++|++..+.... ......+..+|||+|.|+
T Consensus 8 l~~~v~~~~~~~--~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~-~~~~~~~i~~lYIsPLkA 84 (814)
T COG1201 8 LDPRVREWFKRK--FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG-KGKLEDGIYALYISPLKA 84 (814)
T ss_pred cCHHHHHHHHHh--cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc-CCCCCCceEEEEeCcHHH
Confidence 889999999544 99999999999999999999999999999999999999999998864 222345789999999999
Q ss_pred HHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCc-cccCceeEEEEecchhhhc
Q 043110 122 LCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSS-FLHTNLRWIIFDEADRILE 200 (316)
Q Consensus 122 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~-~~~~~l~~lViDEad~l~~ 200 (316)
|...+...++.++..++..+ .+-+|.+..........+.|||+|+||+.|.-++...+. -.+.+++++|+||.|.+.+
T Consensus 85 Ln~Di~~rL~~~~~~~G~~v-~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~ 163 (814)
T COG1201 85 LNNDIRRRLEEPLRELGIEV-AVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAE 163 (814)
T ss_pred HHHHHHHHHHHHHHHcCCcc-ceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhc
Confidence 99999999999999876444 666677776666666777899999999999988876322 2678999999999999999
Q ss_pred CCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcC-C-CEEEE
Q 043110 201 LGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLE-T-PVLIG 261 (316)
Q Consensus 201 ~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~-~-p~~i~ 261 (316)
...+.++..-++++... .. ..|.|++|||.. +...+++.... + |+.|.
T Consensus 164 sKRG~~Lsl~LeRL~~l-----------~~-~~qRIGLSATV~-~~~~varfL~g~~~~~~Iv 213 (814)
T COG1201 164 SKRGVQLALSLERLREL-----------AG-DFQRIGLSATVG-PPEEVAKFLVGFGDPCEIV 213 (814)
T ss_pred cccchhhhhhHHHHHhh-----------Cc-ccEEEeehhccC-CHHHHHHHhcCCCCceEEE
Confidence 99999999888888752 11 789999999998 44444443332 3 65443
No 45
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.95 E-value=3.8e-26 Score=227.45 Aligned_cols=214 Identities=20% Similarity=0.212 Sum_probs=153.0
Q ss_pred ccCCcc--cCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCC
Q 043110 33 ASCCFS--SLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSG 110 (316)
Q Consensus 33 ~~~~f~--~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~ 110 (316)
....|. .++.+..+...+.+.|||..++|+|.++|+.++.|+|+++.+|||+|||+||++|++.. +
T Consensus 433 ~~~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------------~ 500 (1195)
T PLN03137 433 NDKKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------------P 500 (1195)
T ss_pred CCccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------------C
Confidence 334465 46777888888888899999999999999999999999999999999999999999853 2
Q ss_pred eeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHh------cCCcEEEeCcHHHHH---HHhcCCc
Q 043110 111 TFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLR------KGISILVATPGHLLD---HLKHTSS 181 (316)
Q Consensus 111 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~IlV~Tp~~l~~---~l~~~~~ 181 (316)
..+|||+|+++|+.++...+... .+....+.++.....+...+. ..++||++||++|.. ++.....
T Consensus 501 GiTLVISPLiSLmqDQV~~L~~~-----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~ 575 (1195)
T PLN03137 501 GITLVISPLVSLIQDQIMNLLQA-----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLEN 575 (1195)
T ss_pred CcEEEEeCHHHHHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHh
Confidence 34999999999998655554432 355666777777665554433 357999999999853 1221111
Q ss_pred c-ccCceeEEEEecchhhhcCC--cHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHh--cCC
Q 043110 182 F-LHTNLRWIIFDEADRILELG--FGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKIS--LET 256 (316)
Q Consensus 182 ~-~~~~l~~lViDEad~l~~~~--~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~--l~~ 256 (316)
. ....+.+|||||||++++|| |++.+..+-..... -+..|++++|||++..+...+... +.+
T Consensus 576 L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~-------------fp~vPilALTATAT~~V~eDI~~~L~l~~ 642 (1195)
T PLN03137 576 LNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQK-------------FPNIPVLALTATATASVKEDVVQALGLVN 642 (1195)
T ss_pred hhhccccceeccCcchhhhhcccchHHHHHHHHHHHHh-------------CCCCCeEEEEecCCHHHHHHHHHHcCCCC
Confidence 1 22458899999999999997 88877764222111 016789999999999988755443 446
Q ss_pred CEEEEcCCCCCCCCCCCcccccccc
Q 043110 257 PVLIGLDEKKFPEDKSNVHFGSLES 281 (316)
Q Consensus 257 p~~i~~~~~~~~~~~~~~~~~~~~~ 281 (316)
|+.+....+ +.++.+.+++.
T Consensus 643 ~~vfr~Sf~-----RpNL~y~Vv~k 662 (1195)
T PLN03137 643 CVVFRQSFN-----RPNLWYSVVPK 662 (1195)
T ss_pred cEEeecccC-----ccceEEEEecc
Confidence 655443322 23455555543
No 46
>PRK09401 reverse gyrase; Reviewed
Probab=99.95 E-value=4.7e-26 Score=233.43 Aligned_cols=205 Identities=20% Similarity=0.256 Sum_probs=144.7
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHH
Q 043110 45 TLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCL 124 (316)
Q Consensus 45 ~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~ 124 (316)
++.+.+.+.+|+ +|+++|+.++|.++.|+|++++||||+|||. |.++++..+.. .+.++|||+||++|+.
T Consensus 68 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~--------~g~~alIL~PTreLa~ 137 (1176)
T PRK09401 68 EFEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK--------KGKKSYIIFPTRLLVE 137 (1176)
T ss_pred HHHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh--------cCCeEEEEeccHHHHH
Confidence 445566566788 6999999999999999999999999999996 55565555433 2667999999999999
Q ss_pred HHHHHHHHHHhhcCCceeEEeeCCCC-----hHHHHHHHh-cCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhh
Q 043110 125 LVYEILQKLLHRFRWIVPGYVMGGGN-----RSKEKARLR-KGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRI 198 (316)
Q Consensus 125 Q~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~-~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l 198 (316)
|+++.++.++...+ ..+..+.++.. .......+. ..++|+|+||++|.+++.. +....++++|+||||++
T Consensus 138 Qi~~~l~~l~~~~~-~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~---l~~~~~~~lVvDEaD~~ 213 (1176)
T PRK09401 138 QVVEKLEKFGEKVG-CGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE---LPKKKFDFVFVDDVDAV 213 (1176)
T ss_pred HHHHHHHHHhhhcC-ceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh---ccccccCEEEEEChHHh
Confidence 99999999988765 33344444432 223333444 3589999999999998762 33456999999999999
Q ss_pred hc-----------CCcH-HHHHHHHHHhccCccc--------ccC-CCCccccccceEEEEeeecchh-HHHHHHHhcCC
Q 043110 199 LE-----------LGFG-KEIEEILDILGSRNIA--------SIG-EGNEVSNVKRQNLLLSATLNEK-VNHLTKISLET 256 (316)
Q Consensus 199 ~~-----------~~~~-~~i~~i~~~l~~~~~~--------~~~-~~~~~~~~~~q~i~~SAT~~~~-v~~~~~~~l~~ 256 (316)
++ .||. ++++.+++.++..... ... .........+|++++|||+++. +.. ..+++
T Consensus 214 L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ 290 (1176)
T PRK09401 214 LKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRE 290 (1176)
T ss_pred hhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhc
Confidence 96 5785 6888888888641110 000 0000112268999999999864 432 23455
Q ss_pred CEEEEcCCCC
Q 043110 257 PVLIGLDEKK 266 (316)
Q Consensus 257 p~~i~~~~~~ 266 (316)
+..+.+....
T Consensus 291 ll~~~v~~~~ 300 (1176)
T PRK09401 291 LLGFEVGSPV 300 (1176)
T ss_pred cceEEecCcc
Confidence 6556555443
No 47
>PRK01172 ski2-like helicase; Provisional
Probab=99.95 E-value=2.4e-26 Score=227.82 Aligned_cols=186 Identities=24% Similarity=0.328 Sum_probs=150.4
Q ss_pred CcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEE
Q 043110 36 CFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALV 115 (316)
Q Consensus 36 ~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~li 115 (316)
.|++++|++.+.+.+ +..+|. ++++|.++++.+.+|+|++++||||||||+++.+++++.+.. +.++||
T Consensus 2 ~~~~~~l~~~~~~~~-~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~---------~~k~v~ 70 (674)
T PRK01172 2 KISDLGYDDEFLNLF-TGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA---------GLKSIY 70 (674)
T ss_pred cHhhcCCCHHHHHHH-hhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh---------CCcEEE
Confidence 588999999999999 666887 999999999999999999999999999999999999988754 345999
Q ss_pred EeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecc
Q 043110 116 LVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEA 195 (316)
Q Consensus 116 l~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEa 195 (316)
++|+++||.|+++.++++.. .+ ..+....|+...... ..+.++|+|+||+++..++.+. ...+.+++++|+|||
T Consensus 71 i~P~raLa~q~~~~~~~l~~-~g-~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~-~~~l~~v~lvViDEa 144 (674)
T PRK01172 71 IVPLRSLAMEKYEELSRLRS-LG-MRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHD-PYIINDVGLIVADEI 144 (674)
T ss_pred EechHHHHHHHHHHHHHHhh-cC-CeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCC-hhHHhhcCEEEEecc
Confidence 99999999999999987642 23 444455555443221 2346799999999998888763 344678999999999
Q ss_pred hhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHH
Q 043110 196 DRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTK 251 (316)
Q Consensus 196 d~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~ 251 (316)
|.+.+.+++..++.++..+... ++..|++++|||+++ ..++++
T Consensus 145 H~l~d~~rg~~le~ll~~~~~~------------~~~~riI~lSATl~n-~~~la~ 187 (674)
T PRK01172 145 HIIGDEDRGPTLETVLSSARYV------------NPDARILALSATVSN-ANELAQ 187 (674)
T ss_pred hhccCCCccHHHHHHHHHHHhc------------CcCCcEEEEeCccCC-HHHHHH
Confidence 9999888999999888776531 126899999999974 455554
No 48
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=1.8e-26 Score=219.50 Aligned_cols=184 Identities=22% Similarity=0.283 Sum_probs=133.4
Q ss_pred HHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHH
Q 043110 50 LRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEI 129 (316)
Q Consensus 50 l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~ 129 (316)
|++.|||..|+|+|.++|+.+++|+|+++.+|||+|||++|++|++.. +..+||++|+++|+.|+.+.
T Consensus 3 l~~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------------~~~~lVi~P~~~L~~dq~~~ 70 (470)
T TIGR00614 3 LKTVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------------DGITLVISPLISLMEDQVLQ 70 (470)
T ss_pred hHhhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------------CCcEEEEecHHHHHHHHHHH
Confidence 567799999999999999999999999999999999999999998752 23499999999999999888
Q ss_pred HHHHHhhcCCceeEEeeCCCChHHHH---HHH-hcCCcEEEeCcHHHHHHHhcCCcc-ccCceeEEEEecchhhhcCC--
Q 043110 130 LQKLLHRFRWIVPGYVMGGGNRSKEK---ARL-RKGISILVATPGHLLDHLKHTSSF-LHTNLRWIIFDEADRILELG-- 202 (316)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l-~~~~~IlV~Tp~~l~~~l~~~~~~-~~~~l~~lViDEad~l~~~~-- 202 (316)
+..++ +....+.++....... ..+ ...++|+++||+++.........+ ...+++++||||||++++||
T Consensus 71 l~~~g-----i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~ 145 (470)
T TIGR00614 71 LKASG-----IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHD 145 (470)
T ss_pred HHHcC-----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccc
Confidence 77542 3344444554443222 122 234799999999875422110111 34688999999999999986
Q ss_pred cHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHh--cCCCEEEEcC
Q 043110 203 FGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKIS--LETPVLIGLD 263 (316)
Q Consensus 203 ~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~--l~~p~~i~~~ 263 (316)
|.+.+..+...... .+..|++++|||+++.+...+... +.+|..+..+
T Consensus 146 fr~~~~~l~~l~~~-------------~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s 195 (470)
T TIGR00614 146 FRPDYKALGSLKQK-------------FPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS 195 (470)
T ss_pred cHHHHHHHHHHHHH-------------cCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC
Confidence 67766655332221 116789999999999887654433 5577666544
No 49
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.94 E-value=6e-26 Score=227.73 Aligned_cols=223 Identities=23% Similarity=0.281 Sum_probs=163.5
Q ss_pred ccCchhhhhhhhccccccccccc-ccccccc----CCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCC------
Q 043110 5 PLNSQTISKKKKRNDKMSKKKET-VKEIFAS----CCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSG------ 73 (316)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g------ 73 (316)
.|.+..|.+.+.+.+.-.+.-.. .-.+++. ..+ .++.+..+.+.+.+.++|+ ||+.|.+||+.++++
T Consensus 395 ~lg~~~w~~~k~~~~~~~~~~a~~l~~l~a~r~~~~~~-~~~~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~ 472 (926)
T TIGR00580 395 KLGGKSWEKTKAKVKKSVREIAAKLIELYAKRKAIKGH-AFPPDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRP 472 (926)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCc
Confidence 57788999998887554443211 1111111 111 2345667777787889996 999999999999875
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHH
Q 043110 74 RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSK 153 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (316)
+|.+++|+||+|||.+|++|++..+.. +.+++|++||++||.|+++.+++++..++ ..+..+.++.....
T Consensus 473 ~d~Ll~adTGsGKT~val~a~l~al~~---------g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~-i~v~~Lsg~~~~~e 542 (926)
T TIGR00580 473 MDRLVCGDVGFGKTEVAMRAAFKAVLD---------GKQVAVLVPTTLLAQQHFETFKERFANFP-VTIELLSRFRSAKE 542 (926)
T ss_pred CCEEEECCCCccHHHHHHHHHHHHHHh---------CCeEEEEeCcHHHHHHHHHHHHHHhccCC-cEEEEEeccccHHH
Confidence 799999999999999999999988754 46799999999999999999999887654 44555666555433
Q ss_pred H---HHHHhc-CCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccc
Q 043110 154 E---KARLRK-GISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVS 229 (316)
Q Consensus 154 ~---~~~l~~-~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~ 229 (316)
. ...+.. .++|+||||..+ . ..+.+.+++++||||+|++ +......+..++.
T Consensus 543 ~~~~~~~l~~g~~dIVIGTp~ll----~--~~v~f~~L~llVIDEahrf-----gv~~~~~L~~~~~------------- 598 (926)
T TIGR00580 543 QNEILKELASGKIDILIGTHKLL----Q--KDVKFKDLGLLIIDEEQRF-----GVKQKEKLKELRT------------- 598 (926)
T ss_pred HHHHHHHHHcCCceEEEchHHHh----h--CCCCcccCCEEEeeccccc-----chhHHHHHHhcCC-------------
Confidence 3 333444 489999999432 2 3456689999999999993 3444555555554
Q ss_pred cccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCC
Q 043110 230 NVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265 (316)
Q Consensus 230 ~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 265 (316)
++|+++||||+.+....+....+.++..|.....
T Consensus 599 --~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~ 632 (926)
T TIGR00580 599 --SVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPE 632 (926)
T ss_pred --CCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCC
Confidence 7899999999887777777777888888876544
No 50
>PRK14701 reverse gyrase; Provisional
Probab=99.94 E-value=4.4e-25 Score=230.95 Aligned_cols=209 Identities=19% Similarity=0.191 Sum_probs=144.5
Q ss_pred CHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHH
Q 043110 43 DSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSEL 122 (316)
Q Consensus 43 ~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L 122 (316)
-.++.+.+.+.+|| +|+++|+.++|.++.|+|+++.||||+|||++++++++.... .+.++|||+||++|
T Consensus 65 ~~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~---------~g~~aLVl~PTreL 134 (1638)
T PRK14701 65 VEEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL---------KGKKCYIILPTTLL 134 (1638)
T ss_pred HHHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh---------cCCeEEEEECHHHH
Confidence 34566677556899 599999999999999999999999999999976666554322 25679999999999
Q ss_pred HHHHHHHHHHHHhhcC-CceeEEeeCCCChHHHH---HHHhc-CCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchh
Q 043110 123 CLLVYEILQKLLHRFR-WIVPGYVMGGGNRSKEK---ARLRK-GISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADR 197 (316)
Q Consensus 123 ~~Q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~l~~-~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~ 197 (316)
+.|+++.++.++...+ ......++|+.+...+. ..+.. .++|+|+||++|.+++... .. .+++++|+||||+
T Consensus 135 a~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~-~~i~~iVVDEAD~ 211 (1638)
T PRK14701 135 VKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KH-LKFDFIFVDDVDA 211 (1638)
T ss_pred HHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hh-CCCCEEEEECcee
Confidence 9999999999987654 24445666777665543 33444 4899999999998877642 12 5789999999999
Q ss_pred hhc-----------CCcHHHHHH-HHHHhccCcc----------cccCCCCccccccce-EEEEeeecchhHHHHHHHhc
Q 043110 198 ILE-----------LGFGKEIEE-ILDILGSRNI----------ASIGEGNEVSNVKRQ-NLLLSATLNEKVNHLTKISL 254 (316)
Q Consensus 198 l~~-----------~~~~~~i~~-i~~~l~~~~~----------~~~~~~~~~~~~~~q-~i~~SAT~~~~v~~~~~~~l 254 (316)
|++ .||.+++.. +++.++.... ..........+..+| ++++|||++.... . ...+
T Consensus 212 ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~-~-~~l~ 289 (1638)
T PRK14701 212 FLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD-R-VKLY 289 (1638)
T ss_pred ccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH-H-HHHh
Confidence 987 478888764 2222210000 000000001122445 6789999996421 1 1344
Q ss_pred CCCEEEEcCCCC
Q 043110 255 ETPVLIGLDEKK 266 (316)
Q Consensus 255 ~~p~~i~~~~~~ 266 (316)
++|..+.++.+.
T Consensus 290 ~~~l~f~v~~~~ 301 (1638)
T PRK14701 290 RELLGFEVGSGR 301 (1638)
T ss_pred hcCeEEEecCCC
Confidence 778878777664
No 51
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.93 E-value=7.3e-25 Score=224.28 Aligned_cols=223 Identities=21% Similarity=0.252 Sum_probs=164.1
Q ss_pred CccCchhhhhhhhccccccccccc-------cccccccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCC---
Q 043110 4 QPLNSQTISKKKKRNDKMSKKKET-------VKEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSG--- 73 (316)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g--- 73 (316)
..|.+..|.+.+.+.+.-.+.-.. .........| .-+....+.+.+.++|. ||+.|.+||+.++.+
T Consensus 543 ~~lg~~~w~~~k~~~~~~~~~~a~~l~~~~a~r~~~~~~~~---~~~~~~~~~~~~~~~~~-~T~~Q~~aI~~il~d~~~ 618 (1147)
T PRK10689 543 HKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAF---KHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQ 618 (1147)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC---CCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHhhc
Confidence 357788899988877554443211 1112222222 34455666666889995 999999999999987
Q ss_pred ---CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCC
Q 043110 74 ---RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGN 150 (316)
Q Consensus 74 ---~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (316)
+|++++|+||+|||.+|+.++...+.. +.+++|++||++||.|+++.+++.+..++ +.+.++.++.+
T Consensus 619 ~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---------g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~-v~i~~l~g~~s 688 (1147)
T PRK10689 619 PLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---------HKQVAVLVPTTLLAQQHYDNFRDRFANWP-VRIEMLSRFRS 688 (1147)
T ss_pred CCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---------CCeEEEEeCcHHHHHHHHHHHHHhhccCC-ceEEEEECCCC
Confidence 799999999999999999888776542 66799999999999999999998765543 45556667666
Q ss_pred hHHHHHHH---h-cCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCC
Q 043110 151 RSKEKARL---R-KGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGN 226 (316)
Q Consensus 151 ~~~~~~~l---~-~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~ 226 (316)
...+...+ . ..++|+||||+.+ . ..+.+.+++++||||+|++ |+. ....+..++.
T Consensus 689 ~~e~~~il~~l~~g~~dIVVgTp~lL----~--~~v~~~~L~lLVIDEahrf---G~~--~~e~lk~l~~---------- 747 (1147)
T PRK10689 689 AKEQTQILAEAAEGKIDILIGTHKLL----Q--SDVKWKDLGLLIVDEEHRF---GVR--HKERIKAMRA---------- 747 (1147)
T ss_pred HHHHHHHHHHHHhCCCCEEEECHHHH----h--CCCCHhhCCEEEEechhhc---chh--HHHHHHhcCC----------
Confidence 65554433 2 3589999999743 2 3345678999999999996 332 2344455554
Q ss_pred ccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCC
Q 043110 227 EVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKK 266 (316)
Q Consensus 227 ~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~ 266 (316)
++|+++||||+++....++...+++|..|......
T Consensus 748 -----~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~ 782 (1147)
T PRK10689 748 -----DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR 782 (1147)
T ss_pred -----CCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC
Confidence 88999999999888888888899999988765543
No 52
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.93 E-value=2e-24 Score=221.80 Aligned_cols=207 Identities=20% Similarity=0.229 Sum_probs=141.0
Q ss_pred CHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHH
Q 043110 43 DSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSEL 122 (316)
Q Consensus 43 ~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L 122 (316)
..++.+.+.+..|+ +|+++|+.++|.++.|+|++++||||+|||+ |.+|+...+.. .+.++|||+||++|
T Consensus 64 ~~~f~~~f~~~~g~-~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~--------~g~~vLIL~PTreL 133 (1171)
T TIGR01054 64 LKEFEEFFKKAVGS-EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK--------KGKRCYIILPTTLL 133 (1171)
T ss_pred HHHHHHHHHHhcCC-CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh--------cCCeEEEEeCHHHH
Confidence 34556666445565 6999999999999999999999999999997 66777666543 25679999999999
Q ss_pred HHHHHHHHHHHHhhcCCce--eEEeeCCCChHHH---HHHHhc-CCcEEEeCcHHHHHHHhcCCccccCceeEEEEecch
Q 043110 123 CLLVYEILQKLLHRFRWIV--PGYVMGGGNRSKE---KARLRK-GISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEAD 196 (316)
Q Consensus 123 ~~Q~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~l~~-~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad 196 (316)
|.|+++.++.++...+... ..+.+||.+...+ ...+.+ +++|+|+||++|.+++.... ..++++|+||||
T Consensus 134 a~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~----~~~~~iVvDEaD 209 (1171)
T TIGR01054 134 VIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG----PKFDFIFVDDVD 209 (1171)
T ss_pred HHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc----CCCCEEEEeChH
Confidence 9999999999987654222 2345677665543 233444 48999999999998876522 178999999999
Q ss_pred hhhc-----------CCcHHH-HHHHHHHhccCcccc-------cCCCCccccccce--EEEEeee-cchhHHHHHHHhc
Q 043110 197 RILE-----------LGFGKE-IEEILDILGSRNIAS-------IGEGNEVSNVKRQ--NLLLSAT-LNEKVNHLTKISL 254 (316)
Q Consensus 197 ~l~~-----------~~~~~~-i~~i~~~l~~~~~~~-------~~~~~~~~~~~~q--~i~~SAT-~~~~v~~~~~~~l 254 (316)
+|++ .||.++ ++.+++.++...... ........+.++| ++++||| .|..+.. .++
T Consensus 210 ~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~ 286 (1171)
T TIGR01054 210 ALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLF 286 (1171)
T ss_pred hhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHc
Confidence 9998 577764 666654432100000 0000000112344 6779999 5655442 345
Q ss_pred CCCEEEEcCCCC
Q 043110 255 ETPVLIGLDEKK 266 (316)
Q Consensus 255 ~~p~~i~~~~~~ 266 (316)
+++..+.+....
T Consensus 287 r~ll~~~v~~~~ 298 (1171)
T TIGR01054 287 RELLGFEVGGGS 298 (1171)
T ss_pred ccccceEecCcc
Confidence 666666665543
No 53
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.93 E-value=1.2e-24 Score=212.66 Aligned_cols=191 Identities=24% Similarity=0.280 Sum_probs=138.3
Q ss_pred CCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCC
Q 043110 40 LGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 119 (316)
Q Consensus 40 ~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt 119 (316)
++++....+.|++.+||..|+|+|+++|+.+++|+|+++.+|||+|||++|++|++..- ..+||++|+
T Consensus 7 ~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~------------g~tlVisPl 74 (607)
T PRK11057 7 LNLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLD------------GLTLVVSPL 74 (607)
T ss_pred CCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcC------------CCEEEEecH
Confidence 44666667778778999999999999999999999999999999999999999998531 239999999
Q ss_pred hHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHH---HHh-cCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecc
Q 043110 120 SELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA---RLR-KGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEA 195 (316)
Q Consensus 120 ~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~-~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEa 195 (316)
++|+.|+.+.++..+ +...+..++........ .+. ...+++++||+++...... ..+...+++++|||||
T Consensus 75 ~sL~~dqv~~l~~~g-----i~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~-~~l~~~~l~~iVIDEa 148 (607)
T PRK11057 75 ISLMKDQVDQLLANG-----VAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFL-EHLAHWNPALLAVDEA 148 (607)
T ss_pred HHHHHHHHHHHHHcC-----CcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHH-HHHhhCCCCEEEEeCc
Confidence 999999988887642 33444445544443322 222 3478999999998732111 1122347899999999
Q ss_pred hhhhcCC--cHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHH--HhcCCCEEEE
Q 043110 196 DRILELG--FGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTK--ISLETPVLIG 261 (316)
Q Consensus 196 d~l~~~~--~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~--~~l~~p~~i~ 261 (316)
|++.+|| |.+.+..+...... .+..+++++|||+++.+...+. ..+.+|....
T Consensus 149 H~i~~~G~~fr~~y~~L~~l~~~-------------~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~ 205 (607)
T PRK11057 149 HCISQWGHDFRPEYAALGQLRQR-------------FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQI 205 (607)
T ss_pred cccccccCcccHHHHHHHHHHHh-------------CCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE
Confidence 9999986 67666554332211 1167899999999988765433 3456776544
No 54
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.93 E-value=9.7e-25 Score=213.36 Aligned_cols=183 Identities=19% Similarity=0.264 Sum_probs=135.8
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHH
Q 043110 48 DQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVY 127 (316)
Q Consensus 48 ~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~ 127 (316)
+.|++.|||.+|+|+|.++|+.+++|+|+++.+|||+|||++|++|++.. +..++|++|+++|+.|+.
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------------~g~~lVisPl~sL~~dq~ 70 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------------KGLTVVISPLISLMKDQV 70 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------------CCcEEEEcCCHHHHHHHH
Confidence 45767799999999999999999999999999999999999999998742 123899999999999999
Q ss_pred HHHHHHHhhcCCceeEEeeCCCChHHHHHH----HhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCC-
Q 043110 128 EILQKLLHRFRWIVPGYVMGGGNRSKEKAR----LRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELG- 202 (316)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~- 202 (316)
+.++.++ +.+..+.++.+....... ....++|+++||+++...... ......+++++||||||++.+||
T Consensus 71 ~~l~~~g-----i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~-~~l~~~~l~~iViDEaH~i~~~g~ 144 (591)
T TIGR01389 71 DQLRAAG-----VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFL-NMLQRIPIALVAVDEAHCVSQWGH 144 (591)
T ss_pred HHHHHcC-----CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHH-HHHhcCCCCEEEEeCCcccccccC
Confidence 8887753 344455555554433222 234579999999998643221 12234578999999999999876
Q ss_pred -cHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhc--CCCEEEE
Q 043110 203 -FGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISL--ETPVLIG 261 (316)
Q Consensus 203 -~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l--~~p~~i~ 261 (316)
|++.+..+....... +..+++++|||.++.+...+...+ .+|..+.
T Consensus 145 ~frp~y~~l~~l~~~~-------------~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~ 193 (591)
T TIGR01389 145 DFRPEYQRLGSLAERF-------------PQVPRIALTATADAETRQDIRELLRLADANEFI 193 (591)
T ss_pred ccHHHHHHHHHHHHhC-------------CCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe
Confidence 777776665543321 145699999999999887665554 3555443
No 55
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.92 E-value=7e-24 Score=211.57 Aligned_cols=210 Identities=28% Similarity=0.330 Sum_probs=158.6
Q ss_pred CCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChH
Q 043110 42 LDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSE 121 (316)
Q Consensus 42 l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~ 121 (316)
.+..+...| .+.|+..|+++|.+|+..+.+|+|+++.++||||||.+|++|+++++.+.. ..++|+|.||++
T Consensus 55 ~~~~l~~~l-~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~-------~a~AL~lYPtnA 126 (851)
T COG1205 55 RDESLKSAL-VKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP-------SARALLLYPTNA 126 (851)
T ss_pred hhhHHHHHH-HHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc-------CccEEEEechhh
Confidence 455567777 445888899999999999999999999999999999999999999998743 336999999999
Q ss_pred HHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHH-HHHhcCCcEEEeCcHHHHHHHhcCC---ccccCceeEEEEecchh
Q 043110 122 LCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEK-ARLRKGISILVATPGHLLDHLKHTS---SFLHTNLRWIIFDEADR 197 (316)
Q Consensus 122 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~IlV~Tp~~l~~~l~~~~---~~~~~~l~~lViDEad~ 197 (316)
|++.+.+.++++....+.......+.|.....+. ....+.++||++||.+|..++.... .+.++++++||+||+|.
T Consensus 127 La~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHt 206 (851)
T COG1205 127 LANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHT 206 (851)
T ss_pred hHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEeccee
Confidence 9999999999999887743444455555555555 6677889999999999998554332 23567899999999998
Q ss_pred hhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCCCCC
Q 043110 198 ILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPE 269 (316)
Q Consensus 198 l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~~~~ 269 (316)
.-. .|+.++..++++|... ....+...|+|+.|||+... ..++..+...+....++++..+.
T Consensus 207 YrG-v~GS~vA~llRRL~~~--------~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~~~ 268 (851)
T COG1205 207 YRG-VQGSEVALLLRRLLRR--------LRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDGSPR 268 (851)
T ss_pred ccc-cchhHHHHHHHHHHHH--------HhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCCCCC
Confidence 655 3788887777777642 11223478999999999855 44555454444444355554333
No 56
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.91 E-value=3e-23 Score=204.96 Aligned_cols=181 Identities=25% Similarity=0.293 Sum_probs=136.1
Q ss_pred CHHHHHHHHHHcCCCCCcHHHHHHHHHHhCC------CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEE
Q 043110 43 DSTLCDQLRERLGFEAPTKVQAQAIPVILSG------RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVL 116 (316)
Q Consensus 43 ~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g------~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil 116 (316)
+..+.+.+.+.++|. ||++|++|++.+.++ .+.+++|+||||||++|++|++..+.. |.+++|+
T Consensus 247 ~~~~~~~~~~~l~f~-lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---------g~q~lil 316 (681)
T PRK10917 247 DGELLKKFLASLPFE-LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---------GYQAALM 316 (681)
T ss_pred ChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---------CCeEEEE
Confidence 356667776889996 999999999999876 479999999999999999999988754 6779999
Q ss_pred eCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHH---HHHHhc-CCcEEEeCcHHHHHHHhcCCccccCceeEEEE
Q 043110 117 VPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKE---KARLRK-GISILVATPGHLLDHLKHTSSFLHTNLRWIIF 192 (316)
Q Consensus 117 ~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~-~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lVi 192 (316)
+||++||.|+++.+++++...+ ..+.++.|+...... ...+.. .++|+||||+.+.+ ...+.+++++|+
T Consensus 317 aPT~~LA~Q~~~~l~~l~~~~~-i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~v~~~~l~lvVI 389 (681)
T PRK10917 317 APTEILAEQHYENLKKLLEPLG-IRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD------DVEFHNLGLVII 389 (681)
T ss_pred eccHHHHHHHHHHHHHHHhhcC-cEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc------cchhcccceEEE
Confidence 9999999999999999987654 566777787765433 333444 48999999987743 234578999999
Q ss_pred ecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEE
Q 043110 193 DEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260 (316)
Q Consensus 193 DEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i 260 (316)
||+|++. ......+..... .+++++||||..+....+......++..+
T Consensus 390 DE~Hrfg-----~~qr~~l~~~~~---------------~~~iL~~SATp~prtl~~~~~g~~~~s~i 437 (681)
T PRK10917 390 DEQHRFG-----VEQRLALREKGE---------------NPHVLVMTATPIPRTLAMTAYGDLDVSVI 437 (681)
T ss_pred echhhhh-----HHHHHHHHhcCC---------------CCCEEEEeCCCCHHHHHHHHcCCCceEEE
Confidence 9999852 223333333322 67899999998766555544333344343
No 57
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.91 E-value=4.3e-24 Score=190.26 Aligned_cols=160 Identities=20% Similarity=0.295 Sum_probs=131.5
Q ss_pred CeeEEEEeCChHHHHHHHHHHHHHHhhcCCc--eeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCce
Q 043110 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWI--VPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNL 187 (316)
Q Consensus 110 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l 187 (316)
.+.+||+-|+|||++|.++.++++-....+. ...+++||.....+...+..+.+|+|+||+|+.+++.. ..+.+..+
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~-g~~~lt~c 364 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISK-GLVTLTHC 364 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhc-cceeeeee
Confidence 4679999999999999999998887665433 33467788899999999999999999999999999986 56677899
Q ss_pred eEEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecc-hhHHHHHHHhcCCCEEEEcCCCC
Q 043110 188 RWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLN-EKVNHLTKISLETPVLIGLDEKK 266 (316)
Q Consensus 188 ~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~-~~v~~~~~~~l~~p~~i~~~~~~ 266 (316)
+++|+||||.++..++.+.|..+...+|... ......|.+++|||+. -+|..+..+.|+-|..|.+..+.
T Consensus 365 rFlvlDead~lL~qgy~d~I~r~h~qip~~t---------sdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD 435 (725)
T KOG0349|consen 365 RFLVLDEADLLLGQGYDDKIYRFHGQIPHMT---------SDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGED 435 (725)
T ss_pred EEEEecchhhhhhcccHHHHHHHhccchhhh---------cCCcccccceeeeEEeEEEeeehhhhhccCceeEeccccc
Confidence 9999999999999999999999999988632 1124789999999995 46888999999999999988877
Q ss_pred CCCCCCCcccccc
Q 043110 267 FPEDKSNVHFGSL 279 (316)
Q Consensus 267 ~~~~~~~~~~~~~ 279 (316)
.-++........+
T Consensus 436 ~vpetvHhvv~lv 448 (725)
T KOG0349|consen 436 LVPETVHHVVKLV 448 (725)
T ss_pred ccchhhccceeec
Confidence 6665544433333
No 58
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.90 E-value=1.5e-22 Score=208.92 Aligned_cols=172 Identities=22% Similarity=0.195 Sum_probs=128.0
Q ss_pred EEcCCCCchHHHHHHHHHHHhhhcCCC----CCCCCCeeEEEEeCChHHHHHHHHHHHHHHhh-----------cCCcee
Q 043110 78 VNAATGTGKTVAYLAPIINHLQSYSPR----IDRSSGTFALVLVPTSELCLLVYEILQKLLHR-----------FRWIVP 142 (316)
Q Consensus 78 i~a~TGsGKT~~~~lp~l~~l~~~~~~----~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~-----------~~~~~~ 142 (316)
++||||||||++|.+|+++.+...... .....++++|||+|+++|+.|+++.++..... ...+.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999998764311 11234689999999999999999988753321 123566
Q ss_pred EEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhccCccccc
Q 043110 143 GYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASI 222 (316)
Q Consensus 143 ~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~ 222 (316)
....|+.+.......+.+.++|||+||++|..++.+.....++++++|||||+|.|.+..++.++...++++...
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l----- 155 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDAL----- 155 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHh-----
Confidence 677777777777667777899999999999998875434467899999999999999877777666666665431
Q ss_pred CCCCccccccceEEEEeeecchhHHHHHHHhc-CCCEEEE
Q 043110 223 GEGNEVSNVKRQNLLLSATLNEKVNHLTKISL-ETPVLIG 261 (316)
Q Consensus 223 ~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l-~~p~~i~ 261 (316)
...+.|+|++|||+++ ..++++... .+|+.|.
T Consensus 156 ------~~~~~QrIgLSATI~n-~eevA~~L~g~~pv~Iv 188 (1490)
T PRK09751 156 ------LHTSAQRIGLSATVRS-ASDVAAFLGGDRPVTVV 188 (1490)
T ss_pred ------CCCCCeEEEEEeeCCC-HHHHHHHhcCCCCEEEE
Confidence 1227899999999986 455554322 3577664
No 59
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.89 E-value=5.9e-22 Score=194.45 Aligned_cols=172 Identities=20% Similarity=0.271 Sum_probs=126.6
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHhCC------CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEe
Q 043110 44 STLCDQLRERLGFEAPTKVQAQAIPVILSG------RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 117 (316)
Q Consensus 44 ~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g------~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~ 117 (316)
......+.+.++| +||+.|++|++.++.+ .+.+++|+||||||++|++|++..+.. |.+++|++
T Consensus 222 ~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---------g~qvlila 291 (630)
T TIGR00643 222 EELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---------GYQVALMA 291 (630)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---------CCcEEEEC
Confidence 3455555588999 5999999999999876 258999999999999999999988754 56799999
Q ss_pred CChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHH---HHHHHh-cCCcEEEeCcHHHHHHHhcCCccccCceeEEEEe
Q 043110 118 PTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSK---EKARLR-KGISILVATPGHLLDHLKHTSSFLHTNLRWIIFD 193 (316)
Q Consensus 118 Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~-~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViD 193 (316)
||++||.|+++.+++++...+ ..+..+.|+..... ....+. ..++|+|+||+.+.+ ...+.+++++|+|
T Consensus 292 PT~~LA~Q~~~~~~~l~~~~g-i~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~------~~~~~~l~lvVID 364 (630)
T TIGR00643 292 PTEILAEQHYNSLRNLLAPLG-IEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE------KVEFKRLALVIID 364 (630)
T ss_pred CHHHHHHHHHHHHHHHhcccC-cEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc------cccccccceEEEe
Confidence 999999999999999987654 56677777766544 233333 347999999998754 2345789999999
Q ss_pred cchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHH
Q 043110 194 EADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHL 249 (316)
Q Consensus 194 Ead~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~ 249 (316)
|+|++.. .....+...... ...+++++||||+.+....+
T Consensus 365 EaH~fg~----~qr~~l~~~~~~-------------~~~~~~l~~SATp~prtl~l 403 (630)
T TIGR00643 365 EQHRFGV----EQRKKLREKGQG-------------GFTPHVLVMSATPIPRTLAL 403 (630)
T ss_pred chhhccH----HHHHHHHHhccc-------------CCCCCEEEEeCCCCcHHHHH
Confidence 9998532 112222222211 01578999999976554433
No 60
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.89 E-value=2.8e-23 Score=201.52 Aligned_cols=221 Identities=20% Similarity=0.210 Sum_probs=153.1
Q ss_pred CCHHHHHHHHHHcCCCCCcHHHHHHHHHHhC-CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCC-CCCCeeEEEEeCC
Q 043110 42 LDSTLCDQLRERLGFEAPTKVQAQAIPVILS-GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRID-RSSGTFALVLVPT 119 (316)
Q Consensus 42 l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~-g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~-~~~~~~~lil~Pt 119 (316)
|+.--.+.+ ++|..++.+|+.++|.+.. ..|.+|+||||+|||..|++.+++.+.+...... ...+.+++||+|+
T Consensus 97 ld~~~rk~~---f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPm 173 (1230)
T KOG0952|consen 97 LDDVGRKGF---FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPM 173 (1230)
T ss_pred cchhhhhhc---ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEech
Confidence 444444455 7999999999999999874 5689999999999999999999999986332221 2357889999999
Q ss_pred hHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCC--ccccCceeEEEEecchh
Q 043110 120 SELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTS--SFLHTNLRWIIFDEADR 197 (316)
Q Consensus 120 ~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~--~~~~~~l~~lViDEad~ 197 (316)
++||.++.+.+.+-+..++ +.+.-+.|........ ...++|+|+||+++--.-+... ...++.++++||||+|.
T Consensus 174 KALa~Em~~~~~kkl~~~g-i~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHl 249 (1230)
T KOG0952|consen 174 KALAAEMVDKFSKKLAPLG-ISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHL 249 (1230)
T ss_pred HHHHHHHHHHHhhhccccc-ceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehh
Confidence 9999877766655554433 4444555554443322 3458999999998744333322 23557899999999998
Q ss_pred hhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCC-CEEEEcCCCCCCCCCCCccc
Q 043110 198 ILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLET-PVLIGLDEKKFPEDKSNVHF 276 (316)
Q Consensus 198 l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~-p~~i~~~~~~~~~~~~~~~~ 276 (316)
|-| ..++-++.|+.+.... -+.+-...+++++|||+|. ..+++...-.+ +..+...+....|.....++
T Consensus 250 Lhd-~RGpvlEtiVaRtlr~--------vessqs~IRivgLSATlPN-~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~ 319 (1230)
T KOG0952|consen 250 LHD-DRGPVLETIVARTLRL--------VESSQSMIRIVGLSATLPN-YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGF 319 (1230)
T ss_pred hcC-cccchHHHHHHHHHHH--------HHhhhhheEEEEeeccCCC-HHHHHHHhcCCCccceeeecccccccceeeeE
Confidence 766 4888899988887631 1122337899999999994 55555533233 56666666666665554444
Q ss_pred ccc
Q 043110 277 GSL 279 (316)
Q Consensus 277 ~~~ 279 (316)
...
T Consensus 320 iG~ 322 (1230)
T KOG0952|consen 320 IGI 322 (1230)
T ss_pred Eee
Confidence 433
No 61
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.89 E-value=2.8e-21 Score=161.99 Aligned_cols=188 Identities=40% Similarity=0.591 Sum_probs=152.9
Q ss_pred HcCCCCCcHHHHHHHHHHhCC-CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHH
Q 043110 53 RLGFEAPTKVQAQAIPVILSG-RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQ 131 (316)
Q Consensus 53 ~~g~~~p~~~Q~~~i~~il~g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~ 131 (316)
.+++..|+++|.++++.+..+ +++++.++||+|||.++..+++..+.... ..+++|++|+++++.|+...+.
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-------~~~~l~~~p~~~~~~~~~~~~~ 75 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-------GKRVLVLVPTRELAEQWAEELK 75 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-------CCcEEEEeCCHHHHHHHHHHHH
Confidence 357788999999999999998 99999999999999999998888876521 2459999999999999999888
Q ss_pred HHHhhcCCceeEEeeCCCChHHHHHHHhcCC-cEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHH
Q 043110 132 KLLHRFRWIVPGYVMGGGNRSKEKARLRKGI-SILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 210 (316)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i 210 (316)
.++.... .......++.........+..+. +++++|++.+.+.+.... .....++++|+||+|.+....+...+..+
T Consensus 76 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~~ 153 (201)
T smart00487 76 KLGPSLG-LKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL-LELSNVDLVILDEAHRLLDGGFGDQLEKL 153 (201)
T ss_pred HHhccCC-eEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC-cCHhHCCEEEEECHHHHhcCCcHHHHHHH
Confidence 8765432 23344455555455555566665 999999999999887643 44467889999999999876788888888
Q ss_pred HHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCC
Q 043110 211 LDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDE 264 (316)
Q Consensus 211 ~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 264 (316)
+..++. ..+++++|||+++........++.+++.+....
T Consensus 154 ~~~~~~---------------~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 154 LKLLPK---------------NVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred HHhCCc---------------cceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 888755 789999999999999999999999888887665
No 62
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.89 E-value=1.8e-22 Score=199.03 Aligned_cols=190 Identities=25% Similarity=0.288 Sum_probs=150.3
Q ss_pred CCCHHHHHHHHHHcCCCCCcHHHHHHHHHHh-CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCC
Q 043110 41 GLDSTLCDQLRERLGFEAPTKVQAQAIPVIL-SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 119 (316)
Q Consensus 41 ~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il-~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt 119 (316)
.+++.+.+.+ +..++.++++-|+.++.... .++|+++++|||||||+.+++.+++.+.+. +.++||++|+
T Consensus 15 ~~~~~v~~i~-~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--------~~k~vYivPl 85 (766)
T COG1204 15 KLDDRVLEIL-KGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--------GGKVVYIVPL 85 (766)
T ss_pred cccHHHHHHh-ccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--------CCcEEEEeCh
Confidence 4778888888 66788888888888876654 569999999999999999999999999873 4569999999
Q ss_pred hHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhh
Q 043110 120 SELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRIL 199 (316)
Q Consensus 120 ~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~ 199 (316)
++||.|.++.++.+ ..++ +.+....|+.....+. ..+++|+|+||+++-.++++... ...+++++||||+|.+.
T Consensus 86 kALa~Ek~~~~~~~-~~~G-irV~~~TgD~~~~~~~---l~~~~ViVtT~EK~Dsl~R~~~~-~~~~V~lvViDEiH~l~ 159 (766)
T COG1204 86 KALAEEKYEEFSRL-EELG-IRVGISTGDYDLDDER---LARYDVIVTTPEKLDSLTRKRPS-WIEEVDLVVIDEIHLLG 159 (766)
T ss_pred HHHHHHHHHHhhhH-HhcC-CEEEEecCCcccchhh---hccCCEEEEchHHhhHhhhcCcc-hhhcccEEEEeeeeecC
Confidence 99999999999833 3444 5666666666644422 34679999999999998887555 56799999999999999
Q ss_pred cCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCE
Q 043110 200 ELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPV 258 (316)
Q Consensus 200 ~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~ 258 (316)
|...++.++.|+..+...+ ...|++.+|||+| +..+++.+.--+++
T Consensus 160 d~~RG~~lE~iv~r~~~~~------------~~~rivgLSATlp-N~~evA~wL~a~~~ 205 (766)
T COG1204 160 DRTRGPVLESIVARMRRLN------------ELIRIVGLSATLP-NAEEVADWLNAKLV 205 (766)
T ss_pred CcccCceehhHHHHHHhhC------------cceEEEEEeeecC-CHHHHHHHhCCccc
Confidence 8889999999999887632 2479999999999 45666654433333
No 63
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=2.9e-22 Score=196.25 Aligned_cols=151 Identities=19% Similarity=0.291 Sum_probs=127.5
Q ss_pred cccCCCCHHHHHHHHH----HcCCCCC---cHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCC
Q 043110 37 FSSLGLDSTLCDQLRE----RLGFEAP---TKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSS 109 (316)
Q Consensus 37 f~~~~l~~~l~~~l~~----~~g~~~p---~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~ 109 (316)
-+.+++..++.+.+.. ..||..| +|+|.+++|.+..+++++++++||+|||++|++|++..+...
T Consensus 64 ~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g-------- 135 (970)
T PRK12899 64 PEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTG-------- 135 (970)
T ss_pred HHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhc--------
Confidence 3567899998888842 5689999 999999999999999999999999999999999999877641
Q ss_pred CeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHH-HHHHhcCCcccc----
Q 043110 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHL-LDHLKHTSSFLH---- 184 (316)
Q Consensus 110 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~~~~~~~---- 184 (316)
..++||+||++||.|.++++..+...++ +.+.++.||.+...+...+ +++|+||||++| +++++.. .+.+
T Consensus 136 -~~v~IVTpTrELA~Qdae~m~~L~k~lG-LsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~-~~~~~~~~ 210 (970)
T PRK12899 136 -KPVHLVTVNDYLAQRDCEWVGSVLRWLG-LTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDN-SIATRKEE 210 (970)
T ss_pred -CCeEEEeCCHHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCC-CCCcCHHH
Confidence 1289999999999999999999998765 7778888998887776554 589999999999 9999863 2322
Q ss_pred ---CceeEEEEecchhhhc
Q 043110 185 ---TNLRWIIFDEADRILE 200 (316)
Q Consensus 185 ---~~l~~lViDEad~l~~ 200 (316)
..+.++||||||.|+-
T Consensus 211 ~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 211 QVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred hhcccccEEEEechhhhhh
Confidence 3568999999999873
No 64
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.87 E-value=3.7e-21 Score=187.42 Aligned_cols=175 Identities=19% Similarity=0.164 Sum_probs=126.7
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCCCchHHH---------HHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHH
Q 043110 61 KVQAQAIPVILSGRDVLVNAATGTGKTVA---------YLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQ 131 (316)
Q Consensus 61 ~~Q~~~i~~il~g~d~li~a~TGsGKT~~---------~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~ 131 (316)
.+|+++++.+++|++++++|+||||||.+ |++|.+..+....+ ...+.+++|++|||+||.|+...+.
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~---~~~~~~ilvt~PrreLa~qi~~~i~ 243 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDP---NFIERPIVLSLPRVALVRLHSITLL 243 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhccc---ccCCcEEEEECcHHHHHHHHHHHHH
Confidence 58999999999999999999999999997 55556655532111 1234579999999999999999887
Q ss_pred HHHhhc--CCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHH
Q 043110 132 KLLHRF--RWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEE 209 (316)
Q Consensus 132 ~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~ 209 (316)
+...+. ....+...+||... .......+..+|+|+|++.. ...+++++++||||||.+...+ +.+..
T Consensus 244 ~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~--------l~~L~~v~~VVIDEaHEr~~~~--DllL~ 312 (675)
T PHA02653 244 KSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT--------LNKLFDYGTVIIDEVHEHDQIG--DIIIA 312 (675)
T ss_pred HHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc--------ccccccCCEEEccccccCccch--hHHHH
Confidence 766432 23344566777663 22222234679999997621 1235689999999999987754 55555
Q ss_pred HHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCC
Q 043110 210 ILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDE 264 (316)
Q Consensus 210 i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 264 (316)
++..+... .+|+++||||+++++..+ ..++.+|..|.+..
T Consensus 313 llk~~~~~--------------~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g 352 (675)
T PHA02653 313 VARKHIDK--------------IRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG 352 (675)
T ss_pred HHHHhhhh--------------cCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC
Confidence 55544321 459999999999988887 57888999888764
No 65
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.85 E-value=3.4e-20 Score=177.68 Aligned_cols=151 Identities=19% Similarity=0.172 Sum_probs=112.0
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhh
Q 043110 57 EAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHR 136 (316)
Q Consensus 57 ~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~ 136 (316)
..|+++|.++++.++.+++.++++|||+|||+++...+...+.. ...++|||+||++|+.|+.+.+++++..
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~--------~~~~vLilvpt~eL~~Q~~~~l~~~~~~ 184 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLEN--------YEGKVLIIVPTTSLVTQMIDDFVDYRLF 184 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhc--------CCCeEEEEECcHHHHHHHHHHHHHhccc
Confidence 47999999999999999999999999999999865422222222 1236999999999999999999987643
Q ss_pred cCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhcc
Q 043110 137 FRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216 (316)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~ 216 (316)
.. .....+.+|.... .+.+|+|+||+++..... ..+.+++++|+||||++.+ ..+..++..+++
T Consensus 185 ~~-~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~----~~~~~~~~iIvDEaH~~~~----~~~~~il~~~~~ 248 (501)
T PHA02558 185 PR-EAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK----EWFDQFGMVIVDECHLFTG----KSLTSIITKLDN 248 (501)
T ss_pred cc-cceeEEecCcccC-------CCCCEEEeeHHHHhhchh----hhccccCEEEEEchhcccc----hhHHHHHHhhhc
Confidence 22 2233344444321 346899999999876432 1346889999999999875 345667777755
Q ss_pred CcccccCCCCccccccceEEEEeeecchhH
Q 043110 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKV 246 (316)
Q Consensus 217 ~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v 246 (316)
.+++++||||+++..
T Consensus 249 ---------------~~~~lGLTATp~~~~ 263 (501)
T PHA02558 249 ---------------CKFKFGLTGSLRDGK 263 (501)
T ss_pred ---------------cceEEEEeccCCCcc
Confidence 678999999997543
No 66
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.84 E-value=2.6e-20 Score=176.21 Aligned_cols=200 Identities=22% Similarity=0.303 Sum_probs=148.8
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHH
Q 043110 46 LCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLL 125 (316)
Q Consensus 46 l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q 125 (316)
+...|.+.|||..+++-|.++|..+++|+|+++..|||+||++||.+|++-.- | .+|||+|..+|+..
T Consensus 5 ~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~-----------G-~TLVVSPLiSLM~D 72 (590)
T COG0514 5 AQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLE-----------G-LTLVVSPLISLMKD 72 (590)
T ss_pred HHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcC-----------C-CEEEECchHHHHHH
Confidence 34567777999999999999999999999999999999999999999997641 2 39999999999998
Q ss_pred HHHHHHHHHhhcCCceeEEeeCCCChHHHH---HHHhc-CCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcC
Q 043110 126 VYEILQKLLHRFRWIVPGYVMGGGNRSKEK---ARLRK-GISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILEL 201 (316)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~-~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~ 201 (316)
+.+.++..+ +...++.+..+..+.. ..+.. ..+++.-+|+++...-.. ..+.-..+.++|||||||+.+|
T Consensus 73 QV~~l~~~G-----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~-~~L~~~~i~l~vIDEAHCiSqW 146 (590)
T COG0514 73 QVDQLEAAG-----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFL-ELLKRLPISLVAIDEAHCISQW 146 (590)
T ss_pred HHHHHHHcC-----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHH-HHHHhCCCceEEechHHHHhhc
Confidence 888887754 3444444443433322 22233 378999999988543221 1112346889999999999999
Q ss_pred C--cHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHH--HhcCCCEEEEcCCCCCCCCCCCcccc
Q 043110 202 G--FGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTK--ISLETPVLIGLDEKKFPEDKSNVHFG 277 (316)
Q Consensus 202 ~--~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~--~~l~~p~~i~~~~~~~~~~~~~~~~~ 277 (316)
| |++.+..+-....... +.+++++|||.++.+..-+. +.+.+|..+..+.+ ..|+.+.
T Consensus 147 GhdFRP~Y~~lg~l~~~~~-------------~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfd-----RpNi~~~ 208 (590)
T COG0514 147 GHDFRPDYRRLGRLRAGLP-------------NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFD-----RPNLALK 208 (590)
T ss_pred CCccCHhHHHHHHHHhhCC-------------CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCC-----Cchhhhh
Confidence 7 9999998887765421 68999999999999987655 45567755544433 4566666
Q ss_pred cccc
Q 043110 278 SLES 281 (316)
Q Consensus 278 ~~~~ 281 (316)
+++.
T Consensus 209 v~~~ 212 (590)
T COG0514 209 VVEK 212 (590)
T ss_pred hhhc
Confidence 6663
No 67
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.83 E-value=2.5e-19 Score=164.60 Aligned_cols=171 Identities=18% Similarity=0.197 Sum_probs=116.2
Q ss_pred HHHHHHHHHhCCCc--EEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcC-
Q 043110 62 VQAQAIPVILSGRD--VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFR- 138 (316)
Q Consensus 62 ~Q~~~i~~il~g~d--~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~- 138 (316)
+|.++++.+.++.+ +++.||||||||.+|++|++.. +.+++|++|+++|+.|+++.++.+...+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~ 68 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------------ENDTIALYPTNALIEDQTEAIKEFVDVFKP 68 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------------CCCEEEEeChHHHHHHHHHHHHHHHHhcCC
Confidence 49999999998875 7899999999999999998842 12389999999999999999999886442
Q ss_pred --CceeEEeeCCCChHH---H-----------------H-HHHhcCCcEEEeCcHHHHHHHhcC---Cc----cccCcee
Q 043110 139 --WIVPGYVMGGGNRSK---E-----------------K-ARLRKGISILVATPGHLLDHLKHT---SS----FLHTNLR 188 (316)
Q Consensus 139 --~~~~~~~~~~~~~~~---~-----------------~-~~l~~~~~IlV~Tp~~l~~~l~~~---~~----~~~~~l~ 188 (316)
.... ....|....+ . . ......++|+++||+.|..+++.. .. ..+..++
T Consensus 69 ~~~~~v-~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~ 147 (357)
T TIGR03158 69 ERDVNL-LHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFS 147 (357)
T ss_pred CCCceE-EEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCC
Confidence 1222 2222322111 0 0 111235789999999998766532 11 1246899
Q ss_pred EEEEecchhhhcCCcH-----HHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHh--cCCCEEE
Q 043110 189 WIIFDEADRILELGFG-----KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKIS--LETPVLI 260 (316)
Q Consensus 189 ~lViDEad~l~~~~~~-----~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~--l~~p~~i 260 (316)
++|+||+|.+..+... -....++..... ..+++++|||+++.+....... +..|+.+
T Consensus 148 ~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~---------------~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~ 211 (357)
T TIGR03158 148 TVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFEC---------------RRKFVFLSATPDPALILRLQNAKQAGVKIAP 211 (357)
T ss_pred EEEEecccccCcccchhhhhhhHHHHHHHhhhc---------------CCcEEEEecCCCHHHHHHHHhccccCceeee
Confidence 9999999997643211 122233333222 4699999999999888777654 5556533
No 68
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.83 E-value=8.7e-20 Score=168.00 Aligned_cols=200 Identities=23% Similarity=0.224 Sum_probs=155.3
Q ss_pred CCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeE
Q 043110 35 CCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPV-ILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 113 (316)
Q Consensus 35 ~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~-il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 113 (316)
...+++++++++.+.| ++.|++++.|+|..|+.. +++|.|.++.++|+||||+..-++-+..+.. .|.+.
T Consensus 194 ~~vdeLdipe~fk~~l-k~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~--------~g~Km 264 (830)
T COG1202 194 VPVDELDIPEKFKRML-KREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS--------GGKKM 264 (830)
T ss_pred ccccccCCcHHHHHHH-HhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh--------CCCeE
Confidence 4678899999999999 667999999999999977 6799999999999999999999988888776 35569
Q ss_pred EEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHH----HHHhcCCcEEEeCcHHHHHHHhcCCccccCceeE
Q 043110 114 LVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEK----ARLRKGISILVATPGHLLDHLKHTSSFLHTNLRW 189 (316)
Q Consensus 114 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~ 189 (316)
|+++|..+||+|-++.++.....++ ..+..-.|........ ......+||+|||.+-+-.+++.. ..+.++..
T Consensus 265 lfLvPLVALANQKy~dF~~rYs~Lg-lkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg--~~lgdiGt 341 (830)
T COG1202 265 LFLVPLVALANQKYEDFKERYSKLG-LKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG--KDLGDIGT 341 (830)
T ss_pred EEEehhHHhhcchHHHHHHHhhccc-ceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC--Ccccccce
Confidence 9999999999999999988776655 3333333332221111 111234799999999998888763 55679999
Q ss_pred EEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEE
Q 043110 190 IIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVL 259 (316)
Q Consensus 190 lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~ 259 (316)
+||||+|.|-|...++.+..++.++.... +..|+|.+|||+.+ ...+++..--+++.
T Consensus 342 VVIDEiHtL~deERG~RLdGLI~RLr~l~------------~~AQ~i~LSATVgN-p~elA~~l~a~lV~ 398 (830)
T COG1202 342 VVIDEIHTLEDEERGPRLDGLIGRLRYLF------------PGAQFIYLSATVGN-PEELAKKLGAKLVL 398 (830)
T ss_pred EEeeeeeeccchhcccchhhHHHHHHHhC------------CCCeEEEEEeecCC-hHHHHHHhCCeeEe
Confidence 99999999998888888888888887532 27899999999974 35555544333433
No 69
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.82 E-value=6.9e-20 Score=168.96 Aligned_cols=156 Identities=21% Similarity=0.190 Sum_probs=107.8
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCC----
Q 043110 75 DVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGN---- 150 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~---- 150 (316)
++++.||||||||++|++|++..+.. ..+.+++|++|+++|+.|+++.+..++.. .....+++..
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~-------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~ 69 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS-------QKADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRI 69 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh-------CCCCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHH
Confidence 58999999999999999999987643 22456999999999999999999987532 1112222111
Q ss_pred --------hHHHHHHHh------cCCcEEEeCcHHHHHHHhcC-Cc--cccC--ceeEEEEecchhhhcCCcHHHHHHHH
Q 043110 151 --------RSKEKARLR------KGISILVATPGHLLDHLKHT-SS--FLHT--NLRWIIFDEADRILELGFGKEIEEIL 211 (316)
Q Consensus 151 --------~~~~~~~l~------~~~~IlV~Tp~~l~~~l~~~-~~--~~~~--~l~~lViDEad~l~~~~~~~~i~~i~ 211 (316)
......... ...+|+|+||+++...+... .. ..+. ..+++|+||+|.+.++++.. +..++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l 148 (358)
T TIGR01587 70 KEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVL 148 (358)
T ss_pred hccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHH
Confidence 011111111 13579999999998877651 11 1111 23789999999998865444 66666
Q ss_pred HHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCC
Q 043110 212 DILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLET 256 (316)
Q Consensus 212 ~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~ 256 (316)
+.+... +.|++++|||+|+.+.++.......
T Consensus 149 ~~l~~~--------------~~~~i~~SATlp~~l~~~~~~~~~~ 179 (358)
T TIGR01587 149 EVLKDN--------------DVPILLMSATLPKFLKEYAEKIGYV 179 (358)
T ss_pred HHHHHc--------------CCCEEEEecCchHHHHHHHhcCCCc
Confidence 666531 6899999999998888877665443
No 70
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.82 E-value=5.2e-19 Score=176.20 Aligned_cols=168 Identities=20% Similarity=0.222 Sum_probs=121.0
Q ss_pred HHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCcee
Q 043110 63 QAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVP 142 (316)
Q Consensus 63 Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~ 142 (316)
-.+.+..+.++.+++++|+||||||.+|.+++++... .+.+++|+.|+|++|.|+++.+...........+
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~V 77 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG---------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTV 77 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc---------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEE
Confidence 3455566678889999999999999999999988652 1346999999999999999988544322122334
Q ss_pred EEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecch-hhhcCCcHHH-HHHHHHHhccCccc
Q 043110 143 GYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEAD-RILELGFGKE-IEEILDILGSRNIA 220 (316)
Q Consensus 143 ~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad-~l~~~~~~~~-i~~i~~~l~~~~~~ 220 (316)
++.+++.. ....+.+|+|+|||+|++.+.+ ...++++++|||||+| ++++.++.-. +..+...++.
T Consensus 78 Gy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~--d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~---- 145 (819)
T TIGR01970 78 GYRVRGEN------KVSRRTRLEVVTEGILTRMIQD--DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLRE---- 145 (819)
T ss_pred EEEEcccc------ccCCCCcEEEECCcHHHHHHhh--CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCC----
Confidence 44444432 2234578999999999999875 3457899999999999 5777665433 3445555554
Q ss_pred ccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCC
Q 043110 221 SIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265 (316)
Q Consensus 221 ~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 265 (316)
..|+++||||++... ...++.++..|.+...
T Consensus 146 -----------dlqlIlmSATl~~~~---l~~~l~~~~vI~~~gr 176 (819)
T TIGR01970 146 -----------DLKILAMSATLDGER---LSSLLPDAPVVESEGR 176 (819)
T ss_pred -----------CceEEEEeCCCCHHH---HHHHcCCCcEEEecCc
Confidence 789999999999653 3456666655655543
No 71
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.81 E-value=1.2e-18 Score=173.90 Aligned_cols=167 Identities=20% Similarity=0.223 Sum_probs=118.0
Q ss_pred HHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeE
Q 043110 64 AQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPG 143 (316)
Q Consensus 64 ~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~ 143 (316)
.+.+..+.++++++++|+||||||.+|.+++++.... ..+++|+.|+|++|.|+++.+...........++
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~---------~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI---------NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc---------CCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 3455666688999999999999999999998875321 2369999999999999999885543222234455
Q ss_pred EeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchh-hhcCCcH-HHHHHHHHHhccCcccc
Q 043110 144 YVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADR-ILELGFG-KEIEEILDILGSRNIAS 221 (316)
Q Consensus 144 ~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~-l~~~~~~-~~i~~i~~~l~~~~~~~ 221 (316)
+..++.+.. ....+|+|+|||+|.+++.. ...+++++++||||+|. .++..+. ..+..+++.++.
T Consensus 82 y~vr~~~~~------~~~t~I~v~T~G~Llr~l~~--d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~----- 148 (812)
T PRK11664 82 YRMRAESKV------GPNTRLEVVTEGILTRMIQR--DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRD----- 148 (812)
T ss_pred EEecCcccc------CCCCcEEEEChhHHHHHHhh--CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCc-----
Confidence 555554321 23458999999999998875 34678999999999996 4443322 223444555544
Q ss_pred cCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCC
Q 043110 222 IGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265 (316)
Q Consensus 222 ~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 265 (316)
..|+++||||++.. .+ ..++.++..|.+...
T Consensus 149 ----------~lqlilmSATl~~~--~l-~~~~~~~~~I~~~gr 179 (812)
T PRK11664 149 ----------DLKLLIMSATLDND--RL-QQLLPDAPVIVSEGR 179 (812)
T ss_pred ----------cceEEEEecCCCHH--HH-HHhcCCCCEEEecCc
Confidence 78999999999864 23 456666666665543
No 72
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.79 E-value=3.6e-18 Score=169.67 Aligned_cols=180 Identities=25% Similarity=0.287 Sum_probs=144.3
Q ss_pred HHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHH
Q 043110 52 ERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQ 131 (316)
Q Consensus 52 ~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~ 131 (316)
..++|+ |.++|++++-.+..|..++++||||+|||++.-.++...+.. +.+++|.+|.++|.+|.+..+.
T Consensus 114 ~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~---------~qrviYTsPIKALsNQKyrdl~ 183 (1041)
T COG4581 114 REYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD---------GQRVIYTSPIKALSNQKYRDLL 183 (1041)
T ss_pred HhCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc---------CCceEeccchhhhhhhHHHHHH
Confidence 557887 999999999999999999999999999999988877777665 4449999999999999998877
Q ss_pred HHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHH
Q 043110 132 KLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 211 (316)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~ 211 (316)
...... .-.+++..|..+. +.++.++|.|.+.|-.++.. ....+.++.++|+||+|.|.|...+.-++.++
T Consensus 184 ~~fgdv-~~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyr-g~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~I 254 (1041)
T COG4581 184 AKFGDV-ADMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYR-GSESLRDIEWVVFDEVHYIGDRERGVVWEEVI 254 (1041)
T ss_pred HHhhhh-hhhccceecceee-------CCCCceEEeeHHHHHHHhcc-CcccccccceEEEEeeeeccccccchhHHHHH
Confidence 765433 1223444444433 34578999999999998887 45666899999999999999999999999999
Q ss_pred HHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhc---CCCEEEEcCCCC
Q 043110 212 DILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISL---ETPVLIGLDEKK 266 (316)
Q Consensus 212 ~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l---~~p~~i~~~~~~ 266 (316)
-.+|. ..|++++|||+|...+ |..+.- ..|+++...+..
T Consensus 255 i~lP~---------------~v~~v~LSATv~N~~E-F~~Wi~~~~~~~~~vv~t~~R 296 (1041)
T COG4581 255 ILLPD---------------HVRFVFLSATVPNAEE-FAEWIQRVHSQPIHVVSTEHR 296 (1041)
T ss_pred HhcCC---------------CCcEEEEeCCCCCHHH-HHHHHHhccCCCeEEEeecCC
Confidence 99998 8899999999996544 443322 467777766654
No 73
>PRK13766 Hef nuclease; Provisional
Probab=99.78 E-value=9e-18 Score=169.47 Aligned_cols=163 Identities=25% Similarity=0.191 Sum_probs=120.7
Q ss_pred CCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHh
Q 043110 56 FEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLH 135 (316)
Q Consensus 56 ~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 135 (316)
.-+|+++|.+++..++.+ |+++++|||+|||+++++++...+.. .+.++|||+||++|+.|+.+.++.++.
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~--------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 83 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK--------KGGKVLILAPTKPLVEQHAEFFRKFLN 83 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh--------CCCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 346899999999888877 99999999999999999988887732 245699999999999999999988764
Q ss_pred hcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhc
Q 043110 136 RFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 215 (316)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~ 215 (316)
.. ...+..+.|+.... +...+..+.+|+|+||+.+...+.. ....+.+++++|+||||++........+...+....
T Consensus 84 ~~-~~~v~~~~g~~~~~-~r~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~ 160 (773)
T PRK13766 84 IP-EEKIVVFTGEVSPE-KRAELWEKAKVIVATPQVIENDLIA-GRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDA 160 (773)
T ss_pred CC-CceEEEEeCCCCHH-HHHHHHhCCCEEEECHHHHHHHHHc-CCCChhhCcEEEEECCccccccccHHHHHHHHHhcC
Confidence 22 12344455555443 4455666789999999999877754 455667899999999999876533333333322222
Q ss_pred cCcccccCCCCccccccceEEEEeeecchh
Q 043110 216 SRNIASIGEGNEVSNVKRQNLLLSATLNEK 245 (316)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~ 245 (316)
. ..+++++|||....
T Consensus 161 ~---------------~~~il~lTaTP~~~ 175 (773)
T PRK13766 161 K---------------NPLVLGLTASPGSD 175 (773)
T ss_pred C---------------CCEEEEEEcCCCCC
Confidence 2 56799999997544
No 74
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.78 E-value=2.8e-18 Score=164.67 Aligned_cols=183 Identities=20% Similarity=0.223 Sum_probs=134.0
Q ss_pred CCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChH
Q 043110 42 LDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSE 121 (316)
Q Consensus 42 l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~ 121 (316)
+++...... ..-..-.++.+|.+....++ |+|+++++|||+|||+.+..-+.+++.... ..++|+++|++-
T Consensus 47 ~~~s~~~~~-~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p-------~~KiVF~aP~~p 117 (746)
T KOG0354|consen 47 LDESAAQRW-IYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP-------KGKVVFLAPTRP 117 (746)
T ss_pred CChhhhccc-cccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC-------cceEEEeeCCch
Confidence 444444433 11233468999999998888 999999999999999999998999887632 367999999999
Q ss_pred HHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcC
Q 043110 122 LCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILEL 201 (316)
Q Consensus 122 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~ 201 (316)
|+.|+...+..++.. .......||.....-...+.+..+|+++||..+...+.+.....++++.++||||||+-...
T Consensus 118 Lv~QQ~a~~~~~~~~---~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn 194 (746)
T KOG0354|consen 118 LVNQQIACFSIYLIP---YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKN 194 (746)
T ss_pred HHHHHHHHHhhccCc---ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEccccccccc
Confidence 999998777766643 22334444533333334566778999999999999998755445788999999999998776
Q ss_pred C-cHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHH
Q 043110 202 G-FGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTK 251 (316)
Q Consensus 202 ~-~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~ 251 (316)
. |...+...+..-.. ..|++++|||+.++......
T Consensus 195 ~~Y~~Vmr~~l~~k~~---------------~~qILgLTASpG~~~~~v~~ 230 (746)
T KOG0354|consen 195 HPYNNIMREYLDLKNQ---------------GNQILGLTASPGSKLEQVQN 230 (746)
T ss_pred ccHHHHHHHHHHhhhc---------------cccEEEEecCCCccHHHHHH
Confidence 4 44444455544332 44999999999876655444
No 75
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=3.5e-18 Score=167.92 Aligned_cols=140 Identities=22% Similarity=0.300 Sum_probs=112.1
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHH
Q 043110 46 LCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLL 125 (316)
Q Consensus 46 l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q 125 (316)
+.++..+.+|. .|+++|..+++.+..|+ ++++.||+|||+++++|++..... |..++|++||++||.|
T Consensus 67 vrea~~R~~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~---------G~~v~VvTpt~~LA~q 134 (790)
T PRK09200 67 VREAAKRVLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE---------GKGVHLITVNDYLAKR 134 (790)
T ss_pred HHHHHHHHhCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc---------CCCeEEEeCCHHHHHH
Confidence 34445456788 59999999999998887 999999999999999999866554 5569999999999999
Q ss_pred HHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHH-HHHHhcCC-----ccccCceeEEEEecchhhh
Q 043110 126 VYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHL-LDHLKHTS-----SFLHTNLRWIIFDEADRIL 199 (316)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~~~-----~~~~~~l~~lViDEad~l~ 199 (316)
.++.+..+...++ +.++++.|+.+...+.+.. .+++|++|||+++ ++++...- ...+..+.++|+||||.++
T Consensus 135 d~e~~~~l~~~lG-l~v~~i~g~~~~~~~r~~~-y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 135 DAEEMGQVYEFLG-LTVGLNFSDIDDASEKKAI-YEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred HHHHHHHHHhhcC-CeEEEEeCCCCcHHHHHHh-cCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 9999999998865 6777788887744444444 4589999999999 56554321 1345788999999999876
No 76
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.78 E-value=1e-17 Score=165.33 Aligned_cols=159 Identities=21% Similarity=0.202 Sum_probs=113.6
Q ss_pred CCcHHHHHHHHHHhCC---CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHH
Q 043110 58 APTKVQAQAIPVILSG---RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL 134 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g---~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 134 (316)
.+++.|+++++.+.++ +++++.++||||||.+|+.++...+.. |.++||++|+++|+.|+++.+++.+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---------g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---------GKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---------CCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 4899999999999874 789999999999999998887776654 4569999999999999999998754
Q ss_pred hhcCCceeEEeeCCCChHHHH---HHHh-cCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCC---cHHHH
Q 043110 135 HRFRWIVPGYVMGGGNRSKEK---ARLR-KGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELG---FGKEI 207 (316)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~---~~l~-~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~---~~~~i 207 (316)
+ ..+..++++.+..... ..+. ..++|+||||+.++ ..+.++.++|+||+|.....+ ...+.
T Consensus 215 ---g-~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~~s~~~~~~p~y~~ 282 (679)
T PRK05580 215 ---G-APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHDSSYKQQEGPRYHA 282 (679)
T ss_pred ---C-CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCccccccCcCCCCcH
Confidence 2 3455666666554332 2333 45799999998764 234688999999999765321 11122
Q ss_pred HHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHH
Q 043110 208 EEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLT 250 (316)
Q Consensus 208 ~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~ 250 (316)
+.+...... ..+.|++++|||.+.+....+
T Consensus 283 r~va~~ra~-------------~~~~~~il~SATps~~s~~~~ 312 (679)
T PRK05580 283 RDLAVVRAK-------------LENIPVVLGSATPSLESLANA 312 (679)
T ss_pred HHHHHHHhh-------------ccCCCEEEEcCCCCHHHHHHH
Confidence 222221111 117899999999876655443
No 77
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.77 E-value=3.5e-18 Score=165.68 Aligned_cols=140 Identities=21% Similarity=0.282 Sum_probs=112.2
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHH
Q 043110 46 LCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLL 125 (316)
Q Consensus 46 l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q 125 (316)
+.++..+.+|.. |+++|..+.+.+..|+ +++++||+|||++|.+|++..... |..++|++||++||.|
T Consensus 45 vrEa~~R~lg~~-p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~---------G~~V~VvTpt~~LA~q 112 (745)
T TIGR00963 45 VREASKRVLGMR-PFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT---------GKGVHVVTVNDYLAQR 112 (745)
T ss_pred HHHHHHHHhCCC-ccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh---------CCCEEEEcCCHHHHHH
Confidence 344554567886 9999999999988887 999999999999999999644433 3349999999999999
Q ss_pred HHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHH-HHHHhcCC-----ccccCceeEEEEecchhhh
Q 043110 126 VYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHL-LDHLKHTS-----SFLHTNLRWIIFDEADRIL 199 (316)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~~~-----~~~~~~l~~lViDEad~l~ 199 (316)
.++.+..+...++ +.+.++.++.+....... ..++|++|||++| +++++..- ...+..+.++|+||+|+++
T Consensus 113 dae~~~~l~~~LG-Lsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~L 189 (745)
T TIGR00963 113 DAEWMGQVYRFLG-LSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSIL 189 (745)
T ss_pred HHHHHHHHhccCC-CeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHh
Confidence 9999999998765 677788888775443333 3479999999999 88887642 2356789999999999987
Q ss_pred c
Q 043110 200 E 200 (316)
Q Consensus 200 ~ 200 (316)
-
T Consensus 190 I 190 (745)
T TIGR00963 190 I 190 (745)
T ss_pred H
Confidence 4
No 78
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=5.7e-18 Score=163.18 Aligned_cols=137 Identities=27% Similarity=0.322 Sum_probs=109.5
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHH
Q 043110 48 DQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVY 127 (316)
Q Consensus 48 ~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~ 127 (316)
++..+.+|.. |+++|..++|.++.|+ ++++.||+|||++|.+|++..... |..++|++||++||.|.+
T Consensus 94 Ea~~R~lg~~-p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~---------G~~v~VvTptreLA~qda 161 (656)
T PRK12898 94 EASGRVLGQR-HFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA---------GLPVHVITVNDYLAERDA 161 (656)
T ss_pred HHHHHHhCCC-CChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc---------CCeEEEEcCcHHHHHHHH
Confidence 3444456886 9999999999999999 999999999999999999987654 567999999999999999
Q ss_pred HHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHH-HHHHhcCC------------------------cc
Q 043110 128 EILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHL-LDHLKHTS------------------------SF 182 (316)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~~~------------------------~~ 182 (316)
+.+..+...++ +.+++++||.+. +.+....+++|++||...| +++++..- ..
T Consensus 162 e~~~~l~~~lG-lsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (656)
T PRK12898 162 ELMRPLYEALG-LTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQL 238 (656)
T ss_pred HHHHHHHhhcC-CEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhh
Confidence 99999998765 677788888654 3344455789999999877 55554321 11
Q ss_pred ccCceeEEEEecchhhh
Q 043110 183 LHTNLRWIIFDEADRIL 199 (316)
Q Consensus 183 ~~~~l~~lViDEad~l~ 199 (316)
....+.+.||||+|.++
T Consensus 239 v~r~~~~aIvDEvDSiL 255 (656)
T PRK12898 239 LLRGLHFAIVDEADSVL 255 (656)
T ss_pred cccccceeEeeccccee
Confidence 23567899999999765
No 79
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.77 E-value=5e-18 Score=151.56 Aligned_cols=188 Identities=25% Similarity=0.303 Sum_probs=134.1
Q ss_pred HHHHHHHHHHcCCCCC-cHHHHHHHHHHhCC-CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChH
Q 043110 44 STLCDQLRERLGFEAP-TKVQAQAIPVILSG-RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSE 121 (316)
Q Consensus 44 ~~l~~~l~~~~g~~~p-~~~Q~~~i~~il~g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~ 121 (316)
..+.++|++.||+..+ ++.|..|+..+..+ +|+.+++|||+||++||.+|.+..- | ..||+.|..+
T Consensus 5 r~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~-----------g-ITIV~SPLiA 72 (641)
T KOG0352|consen 5 RKVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHG-----------G-ITIVISPLIA 72 (641)
T ss_pred HHHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhC-----------C-eEEEehHHHH
Confidence 3467788888888755 79999999998866 5999999999999999999997532 2 4899999999
Q ss_pred HHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHH---HH---hcCCcEEEeCcHHHH-----HHHhcCCccccCceeEE
Q 043110 122 LCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA---RL---RKGISILVATPGHLL-----DHLKHTSSFLHTNLRWI 190 (316)
Q Consensus 122 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l---~~~~~IlV~Tp~~l~-----~~l~~~~~~~~~~l~~l 190 (316)
|...+.+-+..+.- .+..+....+..+..+ .+ .....++..||+... .+++. ...-..++++
T Consensus 73 LIkDQiDHL~~LKV-----p~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~--L~~r~~L~Y~ 145 (641)
T KOG0352|consen 73 LIKDQIDHLKRLKV-----PCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG--LANRDVLRYI 145 (641)
T ss_pred HHHHHHHHHHhcCC-----chhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH--HhhhceeeeE
Confidence 99887777766532 2222222222222111 11 123579999998643 22221 1122458999
Q ss_pred EEecchhhhcCC--cHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHH--HHHHhcCCCEEEEcC
Q 043110 191 IFDEADRILELG--FGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNH--LTKISLETPVLIGLD 263 (316)
Q Consensus 191 ViDEad~l~~~~--~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~--~~~~~l~~p~~i~~~ 263 (316)
|+||||++..|| |++++..+-....... ...-+.++||.+..|++ +..+.|++||-|.-.
T Consensus 146 vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~-------------~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkT 209 (641)
T KOG0352|consen 146 VVDEAHCVSQWGHDFRPDYLTLGSLRSVCP-------------GVPWVALTATANAKVQEDIAFQLKLRNPVAIFKT 209 (641)
T ss_pred EechhhhHhhhccccCcchhhhhhHHhhCC-------------CCceEEeecccChhHHHHHHHHHhhcCcHHhccC
Confidence 999999999996 8888887765544321 67889999999999987 456788999977543
No 80
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.76 E-value=4.7e-17 Score=148.62 Aligned_cols=182 Identities=24% Similarity=0.188 Sum_probs=133.0
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhh
Q 043110 57 EAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHR 136 (316)
Q Consensus 57 ~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~ 136 (316)
-+++.+|.......+.+ |++++.|||-|||+.+++-+...+... .+ ++|+++||+.|+.|.++.+.+...-
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~-------~~-kvlfLAPTKPLV~Qh~~~~~~v~~i 84 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF-------GG-KVLFLAPTKPLVLQHAEFCRKVTGI 84 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc-------CC-eEEEecCCchHHHHHHHHHHHHhCC
Confidence 36888998888777665 999999999999999988888888662 23 6999999999999999999998754
Q ss_pred cCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhcc
Q 043110 137 FRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216 (316)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~ 216 (316)
.. .....+. |....++........+|+|+||..+.+-+.. +.+++.++.++|+||||+-.+..-...+..-.-.-.+
T Consensus 85 p~-~~i~~lt-Gev~p~~R~~~w~~~kVfvaTPQvveNDl~~-Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k 161 (542)
T COG1111 85 PE-DEIAALT-GEVRPEEREELWAKKKVFVATPQVVENDLKA-GRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAK 161 (542)
T ss_pred Ch-hheeeec-CCCChHHHHHHHhhCCEEEeccHHHHhHHhc-CccChHHceEEEechhhhccCcchHHHHHHHHHHhcc
Confidence 22 2333444 4444455556666779999999999888876 6777889999999999998765433333332222222
Q ss_pred CcccccCCCCccccccceEEEEeeecchhHHHH---HHHhcCCCEEEEcCCC
Q 043110 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHL---TKISLETPVLIGLDEK 265 (316)
Q Consensus 217 ~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~---~~~~l~~p~~i~~~~~ 265 (316)
++.++++|||...+...+ +...--.-+.|..+.+
T Consensus 162 ---------------~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d 198 (542)
T COG1111 162 ---------------NPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEED 198 (542)
T ss_pred ---------------CceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCC
Confidence 788999999997665554 4433334455555444
No 81
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.76 E-value=1.2e-17 Score=162.86 Aligned_cols=141 Identities=20% Similarity=0.230 Sum_probs=102.9
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHH
Q 043110 47 CDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLV 126 (316)
Q Consensus 47 ~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~ 126 (316)
.++..+.+|. .|+++|......+..| .+++++||+|||++|++|++..... +..++|++|+++||.|.
T Consensus 60 rEa~~R~lgl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~---------g~~V~VVTpn~yLA~Rd 127 (762)
T TIGR03714 60 READKRVLGM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALT---------GKGAMLVTTNDYLAKRD 127 (762)
T ss_pred HHHHHhhcCC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhc---------CCceEEeCCCHHHHHHH
Confidence 3344445677 4777777766666555 6999999999999999998766654 33499999999999999
Q ss_pred HHHHHHHHhhcCCceeEEeeCCC---ChHHHHHHHhcCCcEEEeCcHHH-HHHHhcC-----CccccCceeEEEEecchh
Q 043110 127 YEILQKLLHRFRWIVPGYVMGGG---NRSKEKARLRKGISILVATPGHL-LDHLKHT-----SSFLHTNLRWIIFDEADR 197 (316)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~~-----~~~~~~~l~~lViDEad~ 197 (316)
++++..+...++. .+.+..++. ....+......+++|++|||++| .+++... ....+..+.++|+||||.
T Consensus 128 ae~m~~l~~~LGL-sv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDs 206 (762)
T TIGR03714 128 AEEMGPVYEWLGL-TVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDS 206 (762)
T ss_pred HHHHHHHHhhcCC-cEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhh
Confidence 9999999988764 444444432 23333344445799999999999 5655321 223457899999999999
Q ss_pred hhc
Q 043110 198 ILE 200 (316)
Q Consensus 198 l~~ 200 (316)
|+-
T Consensus 207 ILi 209 (762)
T TIGR03714 207 VLL 209 (762)
T ss_pred Hhh
Confidence 863
No 82
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.74 E-value=1.2e-16 Score=126.23 Aligned_cols=144 Identities=44% Similarity=0.583 Sum_probs=105.4
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHH
Q 043110 74 RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSK 153 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (316)
+++++.++||+|||..++..+...... +...+++|++|++.++.|..+.+...... ........++.....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 71 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-------LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQ 71 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhH
Confidence 468999999999999998887776654 12345999999999999999988887753 344556666666555
Q ss_pred HHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccc
Q 043110 154 EKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKR 233 (316)
Q Consensus 154 ~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~ 233 (316)
.........+|+++|++.+...+.... ......+++|+||+|.+....+............. ..
T Consensus 72 ~~~~~~~~~~i~i~t~~~~~~~~~~~~-~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~---------------~~ 135 (144)
T cd00046 72 QEKLLSGKTDIVVGTPGRLLDELERLK-LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPK---------------DR 135 (144)
T ss_pred HHHHhcCCCCEEEECcHHHHHHHHcCC-cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCc---------------cc
Confidence 555556778999999999988776532 23356889999999998876544432112222222 78
Q ss_pred eEEEEeeec
Q 043110 234 QNLLLSATL 242 (316)
Q Consensus 234 q~i~~SAT~ 242 (316)
+++++|||+
T Consensus 136 ~~i~~saTp 144 (144)
T cd00046 136 QVLLLSATP 144 (144)
T ss_pred eEEEEeccC
Confidence 899999995
No 83
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.74 E-value=1.3e-17 Score=166.23 Aligned_cols=203 Identities=24% Similarity=0.258 Sum_probs=149.8
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHH
Q 043110 45 TLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCL 124 (316)
Q Consensus 45 ~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~ 124 (316)
+....+...||...+++-|.++|..++.|+|+++.+|||.||++||.+|++-. +...|||.|..+|++
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------------~gitvVISPL~SLm~ 318 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------------GGVTVVISPLISLMQ 318 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------------CCceEEeccHHHHHH
Confidence 56777878899999999999999999999999999999999999999998642 225999999999997
Q ss_pred HHHHHHHHHHhhcCCceeEEeeCCCChH---HHHHHHhcC---CcEEEeCcHHHHHHHhcC-CccccCc---eeEEEEec
Q 043110 125 LVYEILQKLLHRFRWIVPGYVMGGGNRS---KEKARLRKG---ISILVATPGHLLDHLKHT-SSFLHTN---LRWIIFDE 194 (316)
Q Consensus 125 Q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~---~~IlV~Tp~~l~~~l~~~-~~~~~~~---l~~lViDE 194 (316)
.+...+.. ..+....+.++.... ...+.+.++ ++|+..||+++...-.-. ....+.. +.++||||
T Consensus 319 DQv~~L~~-----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDE 393 (941)
T KOG0351|consen 319 DQVTHLSK-----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDE 393 (941)
T ss_pred HHHHhhhh-----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecH
Confidence 66655532 235555666665554 333444444 789999999875432211 1112223 88999999
Q ss_pred chhhhcCC--cHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHH--HHhcCCCEEEEcCCCCCCCC
Q 043110 195 ADRILELG--FGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLT--KISLETPVLIGLDEKKFPED 270 (316)
Q Consensus 195 ad~l~~~~--~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~--~~~l~~p~~i~~~~~~~~~~ 270 (316)
||+...|| |++.+..+-....+.. ...+|.+|||.+..|..-+ .+.+++|..+.-.. +
T Consensus 394 AHCVSqWgHdFRp~Yk~l~~l~~~~~-------------~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sf-----n 455 (941)
T KOG0351|consen 394 AHCVSQWGHDFRPSYKRLGLLRIRFP-------------GVPFIALTATATERVREDVIRSLGLRNPELFKSSF-----N 455 (941)
T ss_pred HHHhhhhcccccHHHHHHHHHHhhCC-------------CCCeEEeehhccHHHHHHHHHHhCCCCcceecccC-----C
Confidence 99999995 8998888776665421 4799999999999887643 45677888665443 3
Q ss_pred CCCcccccccch
Q 043110 271 KSNVHFGSLESD 282 (316)
Q Consensus 271 ~~~~~~~~~~~~ 282 (316)
+.|+++.+....
T Consensus 456 R~NL~yeV~~k~ 467 (941)
T KOG0351|consen 456 RPNLKYEVSPKT 467 (941)
T ss_pred CCCceEEEEecc
Confidence 466777766654
No 84
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=3e-17 Score=161.45 Aligned_cols=136 Identities=21% Similarity=0.249 Sum_probs=108.4
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHH
Q 043110 49 QLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYE 128 (316)
Q Consensus 49 ~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~ 128 (316)
+-.+.+|.. |+++|...--.+..|+ ++.++||+|||++|.+|++..... |..++|++||++||.|.++
T Consensus 74 a~~R~lg~~-~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~---------G~~V~VvTpn~yLA~qd~e 141 (896)
T PRK13104 74 VSLRTLGLR-HFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAIS---------GRGVHIVTVNDYLAKRDSQ 141 (896)
T ss_pred HHHHHcCCC-cchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhc---------CCCEEEEcCCHHHHHHHHH
Confidence 333456775 8899977665555554 899999999999999999977654 2349999999999999999
Q ss_pred HHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHH-HHHHhcCCcccc-----CceeEEEEecchhhh
Q 043110 129 ILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHL-LDHLKHTSSFLH-----TNLRWIIFDEADRIL 199 (316)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~~~~~~~-----~~l~~lViDEad~l~ 199 (316)
++..+...++ +.++++.||.+.......+ .++|++|||++| +++++..-.+.+ ..+.++||||||.|+
T Consensus 142 ~m~~l~~~lG-Ltv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 142 WMKPIYEFLG-LTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred HHHHHhcccC-ceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 9999998765 6777888887766554433 589999999999 999986533333 588999999999886
No 85
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.72 E-value=1.7e-17 Score=163.84 Aligned_cols=227 Identities=18% Similarity=0.169 Sum_probs=161.4
Q ss_pred CCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCC-cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCC--CCCCeeEEEE
Q 043110 40 LGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGR-DVLVNAATGTGKTVAYLAPIINHLQSYSPRID--RSSGTFALVL 116 (316)
Q Consensus 40 ~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~-d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~--~~~~~~~lil 116 (316)
..++.+-..++ +|...++++|.+..+..+.+. ++++|||||+|||..+++.+++.+........ .....+++|+
T Consensus 294 selP~Wnq~aF---~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYI 370 (1674)
T KOG0951|consen 294 SELPKWNQPAF---FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYI 370 (1674)
T ss_pred cCCcchhhhhc---ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEE
Confidence 35777788888 688889999999999998775 79999999999999999999999977544211 1234689999
Q ss_pred eCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCcc-ccCceeEEEEecc
Q 043110 117 VPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSF-LHTNLRWIIFDEA 195 (316)
Q Consensus 117 ~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~-~~~~l~~lViDEa 195 (316)
+|.++|+..+...+.+....++ +.+.-..|..+...+. ..+.+|+||||+..--.-++.+.. ..+-++++|+||.
T Consensus 371 APmKaLvqE~VgsfSkRla~~G-I~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEI 446 (1674)
T KOG0951|consen 371 APMKALVQEMVGSFSKRLAPLG-ITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEI 446 (1674)
T ss_pred eeHHHHHHHHHHHHHhhccccC-cEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhh
Confidence 9999999998888777777665 3333333433322211 234689999999875444432222 2245789999999
Q ss_pred hhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCCCCCCCCCcc
Q 043110 196 DRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKSNVH 275 (316)
Q Consensus 196 d~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~~~~~~~~~~ 275 (316)
|.+-| ..++.++.|..+.... .+.....++.+++|||+|+ -.+.+.-...+|..+.-.+....|.+..++
T Consensus 447 HLLhD-dRGpvLESIVaRt~r~--------ses~~e~~RlVGLSATLPN-y~DV~~Fl~v~~~glf~fd~syRpvPL~qq 516 (1674)
T KOG0951|consen 447 HLLHD-DRGPVLESIVARTFRR--------SESTEEGSRLVGLSATLPN-YEDVASFLRVDPEGLFYFDSSYRPVPLKQQ 516 (1674)
T ss_pred hhccc-ccchHHHHHHHHHHHH--------hhhcccCceeeeecccCCc-hhhhHHHhccCcccccccCcccCcCCccce
Confidence 97655 5888888888777642 2233447899999999995 344444334456666666666777778887
Q ss_pred cccccchh
Q 043110 276 FGSLESDV 283 (316)
Q Consensus 276 ~~~~~~~~ 283 (316)
+..+....
T Consensus 517 ~Igi~ek~ 524 (1674)
T KOG0951|consen 517 YIGITEKK 524 (1674)
T ss_pred EeccccCC
Confidence 77665433
No 86
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.70 E-value=1.6e-16 Score=132.19 Aligned_cols=154 Identities=24% Similarity=0.258 Sum_probs=101.9
Q ss_pred CCcHHHHHHHHHHhC-------CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHH
Q 043110 58 APTKVQAQAIPVILS-------GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEIL 130 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~-------g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~ 130 (316)
+|+++|.+++..+.. ++++++.+|||+|||.+++..+..... ++++++|+..|+.|+.+.+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------------~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------------KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------------EEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------------ceeEecCHHHHHHHHHHHH
Confidence 489999999988883 588999999999999998765554443 3999999999999999998
Q ss_pred HHHHhhcCCcee----------EEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCC----------ccccCceeEE
Q 043110 131 QKLLHRFRWIVP----------GYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTS----------SFLHTNLRWI 190 (316)
Q Consensus 131 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~----------~~~~~~l~~l 190 (316)
..+......... ....................+++++|...+........ .......+++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 150 (184)
T PF04851_consen 71 DDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLV 150 (184)
T ss_dssp HHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEE
T ss_pred HHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEE
Confidence 666543211100 00111111122222334457899999999988765421 1233467899
Q ss_pred EEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecc
Q 043110 191 IFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLN 243 (316)
Q Consensus 191 ViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~ 243 (316)
|+||||++.... ....++. .. ...+++||||++
T Consensus 151 I~DEaH~~~~~~---~~~~i~~--~~---------------~~~~l~lTATp~ 183 (184)
T PF04851_consen 151 IIDEAHHYPSDS---SYREIIE--FK---------------AAFILGLTATPF 183 (184)
T ss_dssp EEETGGCTHHHH---HHHHHHH--SS---------------CCEEEEEESS-S
T ss_pred EEehhhhcCCHH---HHHHHHc--CC---------------CCeEEEEEeCcc
Confidence 999999975532 1455555 22 678999999975
No 87
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.70 E-value=1e-16 Score=154.88 Aligned_cols=164 Identities=24% Similarity=0.240 Sum_probs=133.3
Q ss_pred HHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHH
Q 043110 50 LRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEI 129 (316)
Q Consensus 50 l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~ 129 (316)
+...++|+ |..+|++||-++..|..+++.|+|.+|||+++-.++..... .+.+++|-+|-++|.+|-++.
T Consensus 290 ~a~~~pFe-lD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~---------h~TR~iYTSPIKALSNQKfRD 359 (1248)
T KOG0947|consen 290 MALIYPFE-LDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK---------HMTRTIYTSPIKALSNQKFRD 359 (1248)
T ss_pred HHhhCCCC-ccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh---------hccceEecchhhhhccchHHH
Confidence 33456886 99999999999999999999999999999997665544332 256699999999999999998
Q ss_pred HHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHH
Q 043110 130 LQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEE 209 (316)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~ 209 (316)
+++-+...+ .+.|..... ....++|.|.+.|-.++.+. ....+++.++|+||+|.+.|...+--++.
T Consensus 360 Fk~tF~Dvg-----LlTGDvqin-------PeAsCLIMTTEILRsMLYrg-adliRDvE~VIFDEVHYiND~eRGvVWEE 426 (1248)
T KOG0947|consen 360 FKETFGDVG-----LLTGDVQIN-------PEASCLIMTTEILRSMLYRG-ADLIRDVEFVIFDEVHYINDVERGVVWEE 426 (1248)
T ss_pred HHHhccccc-----eeecceeeC-------CCcceEeehHHHHHHHHhcc-cchhhccceEEEeeeeeccccccccccee
Confidence 887654322 455554443 34579999999999999874 44457899999999999999999999999
Q ss_pred HHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHH
Q 043110 210 ILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKI 252 (316)
Q Consensus 210 i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~ 252 (316)
++-.+|. ..++|++|||+|... +|+.+
T Consensus 427 ViIMlP~---------------HV~~IlLSATVPN~~-EFA~W 453 (1248)
T KOG0947|consen 427 VIIMLPR---------------HVNFILLSATVPNTL-EFADW 453 (1248)
T ss_pred eeeeccc---------------cceEEEEeccCCChH-HHHHH
Confidence 9999998 899999999999654 45544
No 88
>PRK09694 helicase Cas3; Provisional
Probab=99.69 E-value=7.6e-16 Score=153.94 Aligned_cols=174 Identities=20% Similarity=0.110 Sum_probs=115.9
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHH
Q 043110 54 LGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL 133 (316)
Q Consensus 54 ~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 133 (316)
++...|+|+|+.+......+.-+++.||||+|||.+++..+...+.. +...+++|..||+++++|+++++.++
T Consensus 282 ~~~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~-------~~~~gi~~aLPT~Atan~m~~Rl~~~ 354 (878)
T PRK09694 282 DNGYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ-------GLADSIIFALPTQATANAMLSRLEAL 354 (878)
T ss_pred cCCCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCCeEEEECcHHHHHHHHHHHHHHH
Confidence 33447999999886544445679999999999999987766544332 12345999999999999999999876
Q ss_pred Hhhc-CCceeEEeeCCCChHHHH---------------------HHHh---c---CCcEEEeCcHHHHHHHhcCCccccC
Q 043110 134 LHRF-RWIVPGYVMGGGNRSKEK---------------------ARLR---K---GISILVATPGHLLDHLKHTSSFLHT 185 (316)
Q Consensus 134 ~~~~-~~~~~~~~~~~~~~~~~~---------------------~~l~---~---~~~IlV~Tp~~l~~~l~~~~~~~~~ 185 (316)
.... ....+.+.+|........ .-+. + -.+|+|||..+++...-..+...+.
T Consensus 355 ~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR 434 (878)
T PRK09694 355 ASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIR 434 (878)
T ss_pred HHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHH
Confidence 5532 223344444443211100 0111 1 1589999999988655443322222
Q ss_pred c----eeEEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHH
Q 043110 186 N----LRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHL 249 (316)
Q Consensus 186 ~----l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~ 249 (316)
. -++|||||+|.+ +......+..+++.+... ...+|+||||+|....+.
T Consensus 435 ~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~--------------g~~vIllSATLP~~~r~~ 487 (878)
T PRK09694 435 GFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQA--------------GGSVILLSATLPATLKQK 487 (878)
T ss_pred HHhhccCeEEEechhhC-CHHHHHHHHHHHHHHHhc--------------CCcEEEEeCCCCHHHHHH
Confidence 2 258999999986 544556677777766542 567999999999887653
No 89
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.69 E-value=3e-16 Score=138.46 Aligned_cols=186 Identities=21% Similarity=0.240 Sum_probs=138.1
Q ss_pred CCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEE
Q 043110 35 CCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 114 (316)
Q Consensus 35 ~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 114 (316)
++=++++.+.+..+.|++.|..++++|.|..+|...+.|+|+++..|||.||++||.+|++-. ...+|
T Consensus 71 wdkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------------dg~al 138 (695)
T KOG0353|consen 71 WDKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------------DGFAL 138 (695)
T ss_pred cccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------------CCceE
Confidence 455788999999999999999999999999999999999999999999999999999999753 23499
Q ss_pred EEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHH-----HHhc--CCcEEEeCcHHHHHHH---hcC-Cccc
Q 043110 115 VLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA-----RLRK--GISILVATPGHLLDHL---KHT-SSFL 183 (316)
Q Consensus 115 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~--~~~IlV~Tp~~l~~~l---~~~-~~~~ 183 (316)
|++|..+|++.+.-++++++.... .+....+. .+.. ...+ ...++..||+.+...- ... +...
T Consensus 139 vi~plislmedqil~lkqlgi~as-----~lnanssk-e~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~ 212 (695)
T KOG0353|consen 139 VICPLISLMEDQILQLKQLGIDAS-----MLNANSSK-EEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALE 212 (695)
T ss_pred eechhHHHHHHHHHHHHHhCcchh-----hccCcccH-HHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhh
Confidence 999999999988888888764322 22222222 2211 1122 2569999999875422 111 2233
Q ss_pred cCceeEEEEecchhhhcCC--cHHHHHHH--H-HHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhc
Q 043110 184 HTNLRWIIFDEADRILELG--FGKEIEEI--L-DILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISL 254 (316)
Q Consensus 184 ~~~l~~lViDEad~l~~~~--~~~~i~~i--~-~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l 254 (316)
...+.++-+||+|+...|| |++++..+ + +.++ ...++.++||.+..|..-++..+
T Consensus 213 ~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~----------------~~~iigltatatn~vl~d~k~il 272 (695)
T KOG0353|consen 213 AGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFK----------------GAPIIGLTATATNHVLDDAKDIL 272 (695)
T ss_pred cceeEEEeecceeehhhhCcccCcchHHHHHHHHhCC----------------CCceeeeehhhhcchhhHHHHHH
Confidence 4568899999999999986 77766543 2 2222 67899999999988877665443
No 90
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.63 E-value=3.7e-15 Score=146.54 Aligned_cols=138 Identities=22% Similarity=0.275 Sum_probs=108.4
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHH
Q 043110 47 CDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLV 126 (316)
Q Consensus 47 ~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~ 126 (316)
.++..+.+|.. |+++|-...-.+..|+ ++.++||+|||+++.+|++-.... |..+-|++||.+||.|.
T Consensus 71 rEa~~R~lg~~-~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~---------G~~V~IvTpn~yLA~rd 138 (830)
T PRK12904 71 REASKRVLGMR-HFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT---------GKGVHVVTVNDYLAKRD 138 (830)
T ss_pred HHHHHHHhCCC-CCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc---------CCCEEEEecCHHHHHHH
Confidence 34444456876 8999988776776775 999999999999999999633333 22377999999999999
Q ss_pred HHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHH-HHHHhcCCc-----cccCceeEEEEecchhhh
Q 043110 127 YEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHL-LDHLKHTSS-----FLHTNLRWIIFDEADRIL 199 (316)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~~~~-----~~~~~l~~lViDEad~l~ 199 (316)
++.+..+...++ +.++++.++.+.......+ .++|++|||++| +++++.... .....+.++||||||.|+
T Consensus 139 ~e~~~~l~~~LG-lsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 139 AEWMGPLYEFLG-LSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred HHHHHHHHhhcC-CeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 999999998765 6777888887776655543 489999999999 999976432 235678999999999876
No 91
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.62 E-value=2.6e-15 Score=142.26 Aligned_cols=170 Identities=25% Similarity=0.283 Sum_probs=135.0
Q ss_pred CcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcC
Q 043110 59 PTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFR 138 (316)
Q Consensus 59 p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 138 (316)
+.|+|+.+|..+-++..+++.|.|.+|||.++-.++.+.+.. .-++||-+|-++|.+|-|+.+..-+...
T Consensus 130 LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---------kQRVIYTSPIKALSNQKYREl~~EF~DV- 199 (1041)
T KOG0948|consen 130 LDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE---------KQRVIYTSPIKALSNQKYRELLEEFKDV- 199 (1041)
T ss_pred cCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh---------cCeEEeeChhhhhcchhHHHHHHHhccc-
Confidence 789999999999999999999999999999998888888865 3349999999999999998776654432
Q ss_pred CceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhccCc
Q 043110 139 WIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRN 218 (316)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~ 218 (316)
++..|..+. ...+..+|.|.+.|-.++.+ +.-.+..+.|+|+||+|.|-|...+--++.-+-.+|.
T Consensus 200 ----GLMTGDVTI-------nP~ASCLVMTTEILRsMLYR-GSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~-- 265 (1041)
T KOG0948|consen 200 ----GLMTGDVTI-------NPDASCLVMTTEILRSMLYR-GSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPD-- 265 (1041)
T ss_pred ----ceeecceee-------CCCCceeeeHHHHHHHHHhc-cchHhheeeeEEeeeehhccccccceeeeeeEEeccc--
Confidence 344444433 23457999999999999987 4445578999999999999998888777777777777
Q ss_pred ccccCCCCccccccceEEEEeeecchhHHHHHHHhc---CCCEEEEcCCCC
Q 043110 219 IASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISL---ETPVLIGLDEKK 266 (316)
Q Consensus 219 ~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l---~~p~~i~~~~~~ 266 (316)
+.+.+++|||+|.. .+|+++.. +.|++|.-.+-.
T Consensus 266 -------------~vr~VFLSATiPNA-~qFAeWI~~ihkQPcHVVYTdyR 302 (1041)
T KOG0948|consen 266 -------------NVRFVFLSATIPNA-RQFAEWICHIHKQPCHVVYTDYR 302 (1041)
T ss_pred -------------cceEEEEeccCCCH-HHHHHHHHHHhcCCceEEeecCC
Confidence 89999999999955 45555433 478877655443
No 92
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.61 E-value=3.7e-15 Score=140.55 Aligned_cols=148 Identities=30% Similarity=0.350 Sum_probs=100.6
Q ss_pred CCcHHHHHHHHHHhC----CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHH
Q 043110 58 APTKVQAQAIPVILS----GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL 133 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~----g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 133 (316)
.|+++|++++..+.+ ++..++++|||+|||..++..+...... +|||+|+++|+.|+.+.+...
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~------------~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRS------------TLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCC------------EEEEECcHHHHHHHHHHHHHh
Confidence 499999999999998 8899999999999999876544332222 999999999999998777665
Q ss_pred HhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHH
Q 043110 134 LHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDI 213 (316)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~ 213 (316)
.... .....++|...... . ..|.|+|-..+...- ....+......+||+||||++.+..+ ..+.+.
T Consensus 104 ~~~~---~~~g~~~~~~~~~~-----~-~~i~vat~qtl~~~~-~l~~~~~~~~~liI~DE~Hh~~a~~~----~~~~~~ 169 (442)
T COG1061 104 LLLN---DEIGIYGGGEKELE-----P-AKVTVATVQTLARRQ-LLDEFLGNEFGLIIFDEVHHLPAPSY----RRILEL 169 (442)
T ss_pred cCCc---cccceecCceeccC-----C-CcEEEEEhHHHhhhh-hhhhhcccccCEEEEEccccCCcHHH----HHHHHh
Confidence 5321 11222333332211 0 369999988876632 01222334688999999999876433 444444
Q ss_pred hccCcccccCCCCccccccceEEEEeeecchhH
Q 043110 214 LGSRNIASIGEGNEVSNVKRQNLLLSATLNEKV 246 (316)
Q Consensus 214 l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v 246 (316)
+.. ....+++|||++...
T Consensus 170 ~~~---------------~~~~LGLTATp~R~D 187 (442)
T COG1061 170 LSA---------------AYPRLGLTATPERED 187 (442)
T ss_pred hhc---------------ccceeeeccCceeec
Confidence 442 222899999987444
No 93
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.60 E-value=4.2e-15 Score=142.03 Aligned_cols=137 Identities=24% Similarity=0.202 Sum_probs=93.1
Q ss_pred EEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHH--
Q 043110 77 LVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKE-- 154 (316)
Q Consensus 77 li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 154 (316)
++.|+||||||.+|+..+...+.. |.++||++|+++|+.|+++.+++.+. ......+++.+..+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~---------g~~vLvlvP~i~L~~Q~~~~l~~~f~----~~v~vlhs~~~~~er~~ 67 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL---------GKSVLVLVPEIALTPQMIQRFKYRFG----SQVAVLHSGLSDSEKLQ 67 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc---------CCeEEEEeCcHHHHHHHHHHHHHHhC----CcEEEEECCCCHHHHHH
Confidence 468999999999997665555433 45699999999999999999987542 233455665544332
Q ss_pred -HHHHh-cCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCC---cH---HHHHHHHHHhccCcccccCCCC
Q 043110 155 -KARLR-KGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELG---FG---KEIEEILDILGSRNIASIGEGN 226 (316)
Q Consensus 155 -~~~l~-~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~---~~---~~i~~i~~~l~~~~~~~~~~~~ 226 (316)
+..+. ..++|+|||+..++. .+.+++++||||+|.....+ .. .++........
T Consensus 68 ~~~~~~~g~~~IVVGTrsalf~--------p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~----------- 128 (505)
T TIGR00595 68 AWRKVKNGEILVVIGTRSALFL--------PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKF----------- 128 (505)
T ss_pred HHHHHHcCCCCEEECChHHHcC--------cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhc-----------
Confidence 33333 347899999987642 34688999999999866322 11 22333333322
Q ss_pred ccccccceEEEEeeecchhHHHHH
Q 043110 227 EVSNVKRQNLLLSATLNEKVNHLT 250 (316)
Q Consensus 227 ~~~~~~~q~i~~SAT~~~~v~~~~ 250 (316)
+.+++++|||.+.+....+
T Consensus 129 -----~~~vil~SATPsles~~~~ 147 (505)
T TIGR00595 129 -----NCPVVLGSATPSLESYHNA 147 (505)
T ss_pred -----CCCEEEEeCCCCHHHHHHH
Confidence 7899999999775544443
No 94
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.60 E-value=6.1e-14 Score=133.30 Aligned_cols=175 Identities=28% Similarity=0.366 Sum_probs=134.8
Q ss_pred cCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCC------CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCee
Q 043110 39 SLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSG------RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 112 (316)
Q Consensus 39 ~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g------~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 112 (316)
.++.+.++++.+.+.++|+ +|.-|++++..|... .+-++++.-|||||++++++++..+.. |.+
T Consensus 244 ~~~~~~~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~---------G~Q 313 (677)
T COG1200 244 PLPANGELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA---------GYQ 313 (677)
T ss_pred CCCccHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc---------CCe
Confidence 4556677777777889998 999999999999854 356999999999999999999998866 778
Q ss_pred EEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCCh---HHHHHHHhcC-CcEEEeCcHHHHHHHhcCCccccCcee
Q 043110 113 ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNR---SKEKARLRKG-ISILVATPGHLLDHLKHTSSFLHTNLR 188 (316)
Q Consensus 113 ~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~-~~IlV~Tp~~l~~~l~~~~~~~~~~l~ 188 (316)
+..++||--||.|.++.+.+++..++ +.+..+.|.... ......+.++ .+|+|||..-+.+ .+.+.++.
T Consensus 314 ~ALMAPTEILA~QH~~~~~~~l~~~~-i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd------~V~F~~Lg 386 (677)
T COG1200 314 AALMAPTEILAEQHYESLRKWLEPLG-IRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD------KVEFHNLG 386 (677)
T ss_pred eEEeccHHHHHHHHHHHHHHHhhhcC-CeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc------ceeeccee
Confidence 99999999999999999999998876 556666665433 3344445555 8999999754433 44557999
Q ss_pred EEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHH
Q 043110 189 WIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHL 249 (316)
Q Consensus 189 ~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~ 249 (316)
++|+||=|+ |+-.=+..+..-... .+.++.||||.=+....+
T Consensus 387 LVIiDEQHR-----FGV~QR~~L~~KG~~--------------~Ph~LvMTATPIPRTLAl 428 (677)
T COG1200 387 LVIIDEQHR-----FGVHQRLALREKGEQ--------------NPHVLVMTATPIPRTLAL 428 (677)
T ss_pred EEEEecccc-----ccHHHHHHHHHhCCC--------------CCcEEEEeCCCchHHHHH
Confidence 999999999 666666555544320 467899999975544433
No 95
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.59 E-value=4.1e-14 Score=141.38 Aligned_cols=225 Identities=22% Similarity=0.268 Sum_probs=168.4
Q ss_pred ccCchhhhhhhhccccccccc-cccccccccCCc---ccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhC----C--C
Q 043110 5 PLNSQTISKKKKRNDKMSKKK-ETVKEIFASCCF---SSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILS----G--R 74 (316)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~f---~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~----g--~ 74 (316)
.|++..|.+.|.|.+.-.+.- ...-++.+...- -.++-+.+....+...|+|. -|+-|..||..+.. + .
T Consensus 538 kLG~~~W~k~K~K~~~~v~diA~eLi~lyA~R~~~~G~af~~d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpM 616 (1139)
T COG1197 538 KLGGGAWKKAKAKARKKVRDIAAELIKLYAKRQAKKGFAFPPDTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPM 616 (1139)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcc
Confidence 567888999888775544432 222222222111 13567888888998999998 69999999999873 3 3
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHH
Q 043110 75 DVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKE 154 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (316)
|-++||.-|-|||.+++=++...... |.+|.|++||--||+|-++.++..+..++ +.+..+..=.+..++
T Consensus 617 DRLiCGDVGFGKTEVAmRAAFkAV~~---------GKQVAvLVPTTlLA~QHy~tFkeRF~~fP-V~I~~LSRF~s~kE~ 686 (1139)
T COG1197 617 DRLICGDVGFGKTEVAMRAAFKAVMD---------GKQVAVLVPTTLLAQQHYETFKERFAGFP-VRIEVLSRFRSAKEQ 686 (1139)
T ss_pred hheeecCcCCcHHHHHHHHHHHHhcC---------CCeEEEEcccHHhHHHHHHHHHHHhcCCC-eeEEEecccCCHHHH
Confidence 88999999999999998888887765 67899999999999999999999888776 444455444444443
Q ss_pred H---HHHhc-CCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCcccc
Q 043110 155 K---ARLRK-GISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSN 230 (316)
Q Consensus 155 ~---~~l~~-~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~ 230 (316)
. ..+.. ..||||||.. ++. +.+.++++.++||||-|+ |+-.-+.-++.+..
T Consensus 687 ~~il~~la~G~vDIvIGTHr----LL~--kdv~FkdLGLlIIDEEqR-----FGVk~KEkLK~Lr~-------------- 741 (1139)
T COG1197 687 KEILKGLAEGKVDIVIGTHR----LLS--KDVKFKDLGLLIIDEEQR-----FGVKHKEKLKELRA-------------- 741 (1139)
T ss_pred HHHHHHHhcCCccEEEechH----hhC--CCcEEecCCeEEEechhh-----cCccHHHHHHHHhc--------------
Confidence 3 33333 4899999953 333 566778999999999999 66666666666666
Q ss_pred ccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCC
Q 043110 231 VKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKK 266 (316)
Q Consensus 231 ~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~ 266 (316)
+.-++-+|||.=+...+++...+++=-.|.+.+.+
T Consensus 742 -~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~ 776 (1139)
T COG1197 742 -NVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPED 776 (1139)
T ss_pred -cCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCC
Confidence 88999999999888888888888877777766554
No 96
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.57 E-value=7.9e-14 Score=142.84 Aligned_cols=164 Identities=22% Similarity=0.271 Sum_probs=102.9
Q ss_pred HHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeC----ChHHHHHHHHHHHHHHhhcCC
Q 043110 64 AQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP----TSELCLLVYEILQKLLHRFRW 139 (316)
Q Consensus 64 ~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~P----t~~L~~Q~~~~~~~~~~~~~~ 139 (316)
.+.+..+..++.++++|+||||||. .+|.+..... .+....+++.-| +++||.++.+.+..-. +.
T Consensus 80 ~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g------~g~~g~I~~TQPRRlAArsLA~RVA~El~~~l---G~ 148 (1294)
T PRK11131 80 QDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELG------RGVKGLIGHTQPRRLAARTVANRIAEELETEL---GG 148 (1294)
T ss_pred HHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcC------CCCCCceeeCCCcHHHHHHHHHHHHHHHhhhh---cc
Confidence 4455566666778999999999998 4774332211 011112333446 4688888877765421 11
Q ss_pred ceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecch-hhhcCCcHHHHHHHHHHhccCc
Q 043110 140 IVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEAD-RILELGFGKEIEEILDILGSRN 218 (316)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad-~l~~~~~~~~i~~i~~~l~~~~ 218 (316)
.+++... ... ....+++|+|+|||+|++.+... ..+++++++|||||| ++++.+|... .+...++.
T Consensus 149 -~VGY~vr---f~~---~~s~~t~I~v~TpG~LL~~l~~d--~~Ls~~~~IIIDEAHERsLn~DfLLg--~Lk~lL~~-- 215 (1294)
T PRK11131 149 -CVGYKVR---FND---QVSDNTMVKLMTDGILLAEIQQD--RLLMQYDTIIIDEAHERSLNIDFILG--YLKELLPR-- 215 (1294)
T ss_pred -eeceeec---Ccc---ccCCCCCEEEEChHHHHHHHhcC--CccccCcEEEecCccccccccchHHH--HHHHhhhc--
Confidence 1112111 111 11356899999999999998753 347899999999999 6888777642 22223332
Q ss_pred ccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCC
Q 043110 219 IASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265 (316)
Q Consensus 219 ~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 265 (316)
.+..|+|+||||++. ..+.+.+...|+ |.+...
T Consensus 216 -----------rpdlKvILmSATid~--e~fs~~F~~apv-I~V~Gr 248 (1294)
T PRK11131 216 -----------RPDLKVIITSATIDP--ERFSRHFNNAPI-IEVSGR 248 (1294)
T ss_pred -----------CCCceEEEeeCCCCH--HHHHHHcCCCCE-EEEcCc
Confidence 126799999999974 477777777775 555543
No 97
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.56 E-value=4.8e-14 Score=137.75 Aligned_cols=150 Identities=15% Similarity=0.161 Sum_probs=101.1
Q ss_pred CCcHHHHHHHHHHh-CC--CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHH
Q 043110 58 APTKVQAQAIPVIL-SG--RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL 134 (316)
Q Consensus 58 ~p~~~Q~~~i~~il-~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 134 (316)
.++|+|.+++..+. +| +..++++|||+|||+..+..+. .+. ..+|||||+..|+.|+.+.+.++.
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l~-----------k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TVK-----------KSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-HhC-----------CCEEEEeCcHHHHHHHHHHHHHhc
Confidence 47999999998887 34 3689999999999999765443 221 229999999999999999999875
Q ss_pred hhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcC-------CccccCceeEEEEecchhhhcCCcHHHH
Q 043110 135 HRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHT-------SSFLHTNLRWIIFDEADRILELGFGKEI 207 (316)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~-------~~~~~~~l~~lViDEad~l~~~~~~~~i 207 (316)
.. ....+....|+... ......+|+|+|+..+.....+. ..+.-....++|+||||++.. ..+
T Consensus 323 ~l-~~~~I~~~tg~~k~-----~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~f 392 (732)
T TIGR00603 323 TI-DDSQICRFTSDAKE-----RFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMF 392 (732)
T ss_pred CC-CCceEEEEecCccc-----ccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHH
Confidence 32 22233333333211 11223689999998775332211 011123578999999999854 445
Q ss_pred HHHHHHhccCcccccCCCCccccccceEEEEeeecchh
Q 043110 208 EEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEK 245 (316)
Q Consensus 208 ~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~ 245 (316)
..++..+. ....+++|||+...
T Consensus 393 r~il~~l~----------------a~~RLGLTATP~Re 414 (732)
T TIGR00603 393 RRVLTIVQ----------------AHCKLGLTATLVRE 414 (732)
T ss_pred HHHHHhcC----------------cCcEEEEeecCccc
Confidence 55666654 34569999998643
No 98
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=4.4e-14 Score=139.06 Aligned_cols=137 Identities=22% Similarity=0.233 Sum_probs=104.8
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHH
Q 043110 49 QLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYE 128 (316)
Q Consensus 49 ~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~ 128 (316)
+..+.+|.. |+++|...--.+..|+ ++.++||.|||+++.+|++..... |..|.||+|+++||.|..+
T Consensus 74 aa~R~lgm~-~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~---------g~~VhIvT~ndyLA~RD~e 141 (908)
T PRK13107 74 ASKRVFEMR-HFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALT---------GKGVHVITVNDYLARRDAE 141 (908)
T ss_pred HHHHHhCCC-cCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhc---------CCCEEEEeCCHHHHHHHHH
Confidence 333456775 8999976554555554 899999999999999999877765 3339999999999999999
Q ss_pred HHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHH-HHHHhcCCccc-----cCceeEEEEecchhhhc
Q 043110 129 ILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHL-LDHLKHTSSFL-----HTNLRWIIFDEADRILE 200 (316)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~~~~~~-----~~~l~~lViDEad~l~~ 200 (316)
++..+...++ +.+.++.++.+... .... -+++|++|||+.| +++++..-... ...+.+.||||+|.++-
T Consensus 142 ~m~~l~~~lG-lsv~~i~~~~~~~~-r~~~-Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLi 216 (908)
T PRK13107 142 NNRPLFEFLG-LTVGINVAGLGQQE-KKAA-YNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILI 216 (908)
T ss_pred HHHHHHHhcC-CeEEEecCCCCHHH-HHhc-CCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhcc
Confidence 9999998865 66677777766532 2222 2589999999999 88887642222 26788999999998874
No 99
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.53 E-value=3.2e-13 Score=137.19 Aligned_cols=83 Identities=27% Similarity=0.328 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHHcCCCCCcHHHHHHHH----HHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEe
Q 043110 42 LDSTLCDQLRERLGFEAPTKVQAQAIP----VILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 117 (316)
Q Consensus 42 l~~~l~~~l~~~~g~~~p~~~Q~~~i~----~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~ 117 (316)
+++.+.+.+ ...||+ +++.|.+.+. .+..|+++++.||||+|||++|++|++..... +.+++|.+
T Consensus 231 ~~~~~~~~~-~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~---------~~~vvi~t 299 (850)
T TIGR01407 231 LSSLFSKNI-DRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT---------EKPVVIST 299 (850)
T ss_pred ccHHHHHhh-hhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC---------CCeEEEEe
Confidence 344666666 457888 8999998665 55678999999999999999999999886642 23599999
Q ss_pred CChHHHHHHHH-HHHHHHh
Q 043110 118 PTSELCLLVYE-ILQKLLH 135 (316)
Q Consensus 118 Pt~~L~~Q~~~-~~~~~~~ 135 (316)
||++|..|+.. .+..+.+
T Consensus 300 ~t~~Lq~Ql~~~~~~~l~~ 318 (850)
T TIGR01407 300 NTKVLQSQLLEKDIPLLNE 318 (850)
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 99999999865 4555443
No 100
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.48 E-value=1.3e-12 Score=134.44 Aligned_cols=177 Identities=20% Similarity=0.225 Sum_probs=111.4
Q ss_pred cCCCCCcHHHH---HHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHH
Q 043110 54 LGFEAPTKVQA---QAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEIL 130 (316)
Q Consensus 54 ~g~~~p~~~Q~---~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~ 130 (316)
..|...-|+.. +.+..+.+++.++++|+||||||.. +|.+..-.. .+...++++.-|.|--|..++..+
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~------~~~~~~I~~tQPRRlAA~svA~Rv 131 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELG------RGSHGLIGHTQPRRLAARTVAQRI 131 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcC------CCCCceEecCCccHHHHHHHHHHH
Confidence 45555556654 3445555667789999999999984 565432211 111234666678888777777655
Q ss_pred HHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecch-hhhcCCcHHH-HH
Q 043110 131 QKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEAD-RILELGFGKE-IE 208 (316)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad-~l~~~~~~~~-i~ 208 (316)
...........+++.....+. ...+..|.++|+|+|+..+... ..++++++||||||| +.++.+|.-. +.
T Consensus 132 A~elg~~lG~~VGY~vR~~~~------~s~~T~I~~~TdGiLLr~l~~d--~~L~~~~~IIIDEaHERsL~~D~LL~lLk 203 (1283)
T TIGR01967 132 AEELGTPLGEKVGYKVRFHDQ------VSSNTLVKLMTDGILLAETQQD--RFLSRYDTIIIDEAHERSLNIDFLLGYLK 203 (1283)
T ss_pred HHHhCCCcceEEeeEEcCCcc------cCCCceeeeccccHHHHHhhhC--cccccCcEEEEcCcchhhccchhHHHHHH
Confidence 544321111222222211111 1345789999999999988753 346789999999999 5888776643 44
Q ss_pred HHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCC
Q 043110 209 EILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265 (316)
Q Consensus 209 ~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 265 (316)
.++...+ ..|+|+||||++. ..+.+.+...|+ |.+...
T Consensus 204 ~il~~rp----------------dLKlIlmSATld~--~~fa~~F~~apv-I~V~Gr 241 (1283)
T TIGR01967 204 QLLPRRP----------------DLKIIITSATIDP--ERFSRHFNNAPI-IEVSGR 241 (1283)
T ss_pred HHHhhCC----------------CCeEEEEeCCcCH--HHHHHHhcCCCE-EEECCC
Confidence 4443322 6799999999974 577777766675 445443
No 101
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.45 E-value=1.1e-12 Score=134.98 Aligned_cols=161 Identities=20% Similarity=0.151 Sum_probs=102.9
Q ss_pred CCcHHHHHHHHHHh----CC-CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHH
Q 043110 58 APTKVQAQAIPVIL----SG-RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQK 132 (316)
Q Consensus 58 ~p~~~Q~~~i~~il----~g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 132 (316)
.++++|.+|+..+. .| +..+++++||||||.+.+ .++..+.+.. ...++|+|+|+++|+.|..+.++.
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai-~li~~L~~~~------~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAI-ALMYRLLKAK------RFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHH-HHHHHHHhcC------ccCeEEEEecHHHHHHHHHHHHHh
Confidence 48999999998775 33 579999999999998854 3445444321 234699999999999999998887
Q ss_pred HHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcC----CccccCceeEEEEecchhhhc------C-
Q 043110 133 LLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHT----SSFLHTNLRWIIFDEADRILE------L- 201 (316)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~----~~~~~~~l~~lViDEad~l~~------~- 201 (316)
+..... ......++...... ........|+|+|...+...+... ....+..+++||+||||+-.. .
T Consensus 486 ~~~~~~-~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~ 562 (1123)
T PRK11448 486 TKIEGD-QTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEG 562 (1123)
T ss_pred cccccc-cchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccc
Confidence 632111 00000111100000 111234689999999987765321 113456788999999999531 0
Q ss_pred --C------cHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchh
Q 043110 202 --G------FGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEK 245 (316)
Q Consensus 202 --~------~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~ 245 (316)
+ +...+..++.++ ....|+||||....
T Consensus 563 ~~~~~~~~~~~~~yr~iL~yF-----------------dA~~IGLTATP~r~ 597 (1123)
T PRK11448 563 ELQFRDQLDYVSKYRRVLDYF-----------------DAVKIGLTATPALH 597 (1123)
T ss_pred hhccchhhhHHHHHHHHHhhc-----------------CccEEEEecCCccc
Confidence 1 134566666654 34679999998643
No 102
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.43 E-value=3.1e-12 Score=128.79 Aligned_cols=132 Identities=23% Similarity=0.324 Sum_probs=91.6
Q ss_pred CCCCCcHHHHHHHHH----HhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHH-HH
Q 043110 55 GFEAPTKVQAQAIPV----ILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVY-EI 129 (316)
Q Consensus 55 g~~~p~~~Q~~~i~~----il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~-~~ 129 (316)
||+ +++-|.+.... +.++++++++|+||+|||++|++|++... .+.++||++||++|++|+. +.
T Consensus 243 ~~e-~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----------~~~~vvI~t~T~~Lq~Ql~~~~ 311 (820)
T PRK07246 243 GLE-ERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----------DQRQIIVSVPTKILQDQIMAEE 311 (820)
T ss_pred CCc-cCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----------CCCcEEEEeCcHHHHHHHHHHH
Confidence 665 89999884433 44678899999999999999999988753 1345999999999999994 66
Q ss_pred HHHHHhhcCCceeEEeeCCCChH---------------------------------------------------------
Q 043110 130 LQKLLHRFRWIVPGYVMGGGNRS--------------------------------------------------------- 152 (316)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------------- 152 (316)
+..+...++ +....+.|+.+.-
T Consensus 312 i~~l~~~~~-~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~ 390 (820)
T PRK07246 312 VKAIQEVFH-IDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDG 390 (820)
T ss_pred HHHHHHhcC-CcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccC
Confidence 777665543 2233333332100
Q ss_pred --------------HHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhc
Q 043110 153 --------------KEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILE 200 (316)
Q Consensus 153 --------------~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~ 200 (316)
...+.-...++|+|+....|+..+.... .+...+++||||||++.+
T Consensus 391 ~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~--~~p~~~~lIiDEAH~l~~ 450 (820)
T PRK07246 391 NLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK--DFARNKVLVFDEAQKLML 450 (820)
T ss_pred CCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc--CCCCCCEEEEECcchhHH
Confidence 0000011236899999998888765432 245789999999999874
No 103
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.43 E-value=3e-12 Score=124.06 Aligned_cols=62 Identities=24% Similarity=0.333 Sum_probs=52.1
Q ss_pred HHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHH
Q 043110 66 AIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL 134 (316)
Q Consensus 66 ~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 134 (316)
+...+.+++.+++.|+||+|||++|++|++..+... .+.++||++||++|+.|+.+.+..+.
T Consensus 9 i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~-------~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 9 CLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER-------PDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc-------cCceEEEECCcHHHHHHHHHHHHHHH
Confidence 344556788899999999999999999999877531 24569999999999999999888776
No 104
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.42 E-value=7.3e-12 Score=123.02 Aligned_cols=157 Identities=25% Similarity=0.370 Sum_probs=111.5
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHH
Q 043110 44 STLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELC 123 (316)
Q Consensus 44 ~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~ 123 (316)
+++.+.+.+..|+ +|...|+.....+..|+++-+.||||.|||..-++..+- +.. .|.+++||+||..|+
T Consensus 69 e~~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~-~a~--------kgkr~yii~PT~~Lv 138 (1187)
T COG1110 69 EEFEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLY-LAK--------KGKRVYIIVPTTTLV 138 (1187)
T ss_pred HHHHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHH-HHh--------cCCeEEEEecCHHHH
Confidence 3455566566677 699999999999999999999999999999754433333 222 245699999999999
Q ss_pred HHHHHHHHHHHhhcCCceeEEeeCCC-Ch---HHHHHHHhc-CCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhh
Q 043110 124 LLVYEILQKLLHRFRWIVPGYVMGGG-NR---SKEKARLRK-GISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRI 198 (316)
Q Consensus 124 ~Q~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~l~~-~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l 198 (316)
.|.++.+++++...+.....+.+.+. .. ..-...+.+ +.||+|+|...|...+..... -+++++++|++|.+
T Consensus 139 ~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~---~kFdfifVDDVDA~ 215 (1187)
T COG1110 139 RQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK---LKFDFIFVDDVDAI 215 (1187)
T ss_pred HHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc---cCCCEEEEccHHHH
Confidence 99999999999876633333323332 22 222334443 589999999888776664322 26789999999999
Q ss_pred hcCCcHHHHHHHHHHhc
Q 043110 199 LELGFGKEIEEILDILG 215 (316)
Q Consensus 199 ~~~~~~~~i~~i~~~l~ 215 (316)
+..+ ..++.++..+.
T Consensus 216 Lkas--kNvDriL~LlG 230 (1187)
T COG1110 216 LKAS--KNVDRLLRLLG 230 (1187)
T ss_pred Hhcc--ccHHHHHHHcC
Confidence 8754 44555554443
No 105
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.39 E-value=2.3e-12 Score=125.75 Aligned_cols=181 Identities=19% Similarity=0.196 Sum_probs=134.9
Q ss_pred CCCHHHHHHHHHHcCCCCCcHHHHHHH--HHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeC
Q 043110 41 GLDSTLCDQLRERLGFEAPTKVQAQAI--PVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP 118 (316)
Q Consensus 41 ~l~~~l~~~l~~~~g~~~p~~~Q~~~i--~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~P 118 (316)
.+.+.+.+......|...++.||.+|+ |.++.++|.+..+||+.|||++.-+-++..+..... .++.+.|
T Consensus 206 ~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr--------~~llilp 277 (1008)
T KOG0950|consen 206 RLPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR--------NVLLILP 277 (1008)
T ss_pred cCchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh--------ceeEecc
Confidence 466666666657779999999999997 778899999999999999999998888877765333 2899999
Q ss_pred ChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcC-CccccCceeEEEEecchh
Q 043110 119 TSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHT-SSFLHTNLRWIIFDEADR 197 (316)
Q Consensus 119 t~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~-~~~~~~~l~~lViDEad~ 197 (316)
..+.+..-...+..+....+..+-++. |...... ..+.-++.|||-++-..++... ..-.+..+.++|+||.|.
T Consensus 278 ~vsiv~Ek~~~l~~~~~~~G~~ve~y~-g~~~p~~----~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhm 352 (1008)
T KOG0950|consen 278 YVSIVQEKISALSPFSIDLGFPVEEYA-GRFPPEK----RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHM 352 (1008)
T ss_pred eeehhHHHHhhhhhhccccCCcchhhc-ccCCCCC----cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeee
Confidence 988887777777777776664443333 3322211 1233579999999876666432 112345789999999999
Q ss_pred hhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecch
Q 043110 198 ILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNE 244 (316)
Q Consensus 198 l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~ 244 (316)
+.|.+.+..++.++..+--.+. ....|+|+||||+|+
T Consensus 353 i~d~~rg~~lE~~l~k~~y~~~----------~~~~~iIGMSATi~N 389 (1008)
T KOG0950|consen 353 IGDKGRGAILELLLAKILYENL----------ETSVQIIGMSATIPN 389 (1008)
T ss_pred eeccccchHHHHHHHHHHHhcc----------ccceeEeeeecccCC
Confidence 9999999999999887754221 113789999999985
No 106
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.38 E-value=7.5e-12 Score=123.76 Aligned_cols=152 Identities=22% Similarity=0.209 Sum_probs=97.7
Q ss_pred CcHHHHHHHHHHh----C------CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHH
Q 043110 59 PTKVQAQAIPVIL----S------GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYE 128 (316)
Q Consensus 59 p~~~Q~~~i~~il----~------g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~ 128 (316)
|+..|..|+..+. . .+..++..+||||||++.+..+...+.. ....++|+|+|+.+|..|+.+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~-------~~~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL-------LKNPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh-------cCCCeEEEEECcHHHHHHHHH
Confidence 6888999987764 2 2469999999999999876544433321 235679999999999999999
Q ss_pred HHHHHHhhcCCceeEEeeCCCChHHHHHHHhc-CCcEEEeCcHHHHHHHhcC-CccccC-ceeEEEEecchhhhcCCcHH
Q 043110 129 ILQKLLHRFRWIVPGYVMGGGNRSKEKARLRK-GISILVATPGHLLDHLKHT-SSFLHT-NLRWIIFDEADRILELGFGK 205 (316)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~IlV~Tp~~l~~~l~~~-~~~~~~-~l~~lViDEad~l~~~~~~~ 205 (316)
.+..++... ..+..+.......+.. ...|+|+|...+...+... ...... .--++|+||||+.. ++.
T Consensus 312 ~f~~~~~~~-------~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~---~~~ 381 (667)
T TIGR00348 312 EFQSLQKDC-------AERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQ---YGE 381 (667)
T ss_pred HHHhhCCCC-------CcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCcccc---chH
Confidence 988875310 1111222223333332 3589999999997644321 111111 11289999999853 333
Q ss_pred HHHHHHHHhccCcccccCCCCccccccceEEEEeeecc
Q 043110 206 EIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLN 243 (316)
Q Consensus 206 ~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~ 243 (316)
....+.+.++ +...++||||.-
T Consensus 382 ~~~~l~~~~p----------------~a~~lGfTaTP~ 403 (667)
T TIGR00348 382 LAKNLKKALK----------------NASFFGFTGTPI 403 (667)
T ss_pred HHHHHHhhCC----------------CCcEEEEeCCCc
Confidence 2333334554 568999999974
No 107
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.35 E-value=4.1e-12 Score=123.85 Aligned_cols=164 Identities=21% Similarity=0.225 Sum_probs=114.5
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHH
Q 043110 55 GFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL 134 (316)
Q Consensus 55 g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 134 (316)
+|. |..||.+.+...-.+..+++.|||.+|||++-...+-..+...+ .-.+|+++||++|+.|+...+....
T Consensus 509 dF~-Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD-------~~VVIyvaPtKaLVnQvsa~VyaRF 580 (1330)
T KOG0949|consen 509 DFC-PDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESD-------SDVVIYVAPTKALVNQVSANVYARF 580 (1330)
T ss_pred ccC-CcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcC-------CCEEEEecchHHHhhhhhHHHHHhh
Confidence 344 88999999999999999999999999999985454444444322 3348999999999999988777665
Q ss_pred hhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcC--CccccCceeEEEEecchhhhcCCcHHHHHHHHH
Q 043110 135 HRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHT--SSFLHTNLRWIIFDEADRILELGFGKEIEEILD 212 (316)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~--~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~ 212 (316)
..-.......+.|..+.+-. .-.-.|+|+|+-|+.+..++... ..-..++++++|+||+|.+-.+.-+--++.++.
T Consensus 581 ~~~t~~rg~sl~g~ltqEYs--inp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~ 658 (1330)
T KOG0949|consen 581 DTKTFLRGVSLLGDLTQEYS--INPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLL 658 (1330)
T ss_pred ccCccccchhhHhhhhHHhc--CCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHH
Confidence 32211111122222221111 11224899999999999888763 223557899999999999876654445555555
Q ss_pred HhccCcccccCCCCccccccceEEEEeeecchh
Q 043110 213 ILGSRNIASIGEGNEVSNVKRQNLLLSATLNEK 245 (316)
Q Consensus 213 ~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~ 245 (316)
.. .+.++.+|||+.+.
T Consensus 659 li-----------------~CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 659 LI-----------------PCPFLVLSATIGNP 674 (1330)
T ss_pred hc-----------------CCCeeEEecccCCH
Confidence 54 78999999999654
No 108
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.33 E-value=2.5e-11 Score=108.27 Aligned_cols=76 Identities=28% Similarity=0.331 Sum_probs=59.7
Q ss_pred cCCCCCcHHHHH----HHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHH
Q 043110 54 LGFEAPTKVQAQ----AIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEI 129 (316)
Q Consensus 54 ~g~~~p~~~Q~~----~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~ 129 (316)
|.|. |+|.|.+ +...+.+|+++++.||||+|||++|++|++..+...... ..+.+++|+++|..+.+|....
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~---~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER---IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc---ccccceeEEeccHHHHHHHHHH
Confidence 6776 7999999 445566889999999999999999999999876653221 0234699999999998888776
Q ss_pred HHHH
Q 043110 130 LQKL 133 (316)
Q Consensus 130 ~~~~ 133 (316)
++++
T Consensus 81 l~~~ 84 (289)
T smart00489 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 6654
No 109
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.33 E-value=2.5e-11 Score=108.27 Aligned_cols=76 Identities=28% Similarity=0.331 Sum_probs=59.7
Q ss_pred cCCCCCcHHHHH----HHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHH
Q 043110 54 LGFEAPTKVQAQ----AIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEI 129 (316)
Q Consensus 54 ~g~~~p~~~Q~~----~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~ 129 (316)
|.|. |+|.|.+ +...+.+|+++++.||||+|||++|++|++..+...... ..+.+++|+++|..+.+|....
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~---~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER---IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc---ccccceeEEeccHHHHHHHHHH
Confidence 6776 7999999 445566889999999999999999999999876653221 0234699999999998888776
Q ss_pred HHHH
Q 043110 130 LQKL 133 (316)
Q Consensus 130 ~~~~ 133 (316)
++++
T Consensus 81 l~~~ 84 (289)
T smart00488 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 6654
No 110
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.29 E-value=1.4e-11 Score=119.07 Aligned_cols=139 Identities=24% Similarity=0.267 Sum_probs=98.7
Q ss_pred CCCcHHHHHHHHHHh----CCCc-EEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHH
Q 043110 57 EAPTKVQAQAIPVIL----SGRD-VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQ 131 (316)
Q Consensus 57 ~~p~~~Q~~~i~~il----~g~d-~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~ 131 (316)
..|+.+|..||..+. .|++ +++++.||+|||.++ +.++.+|.+. +.-.++|+|+-+++|+.|.+..+.
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~------~~~KRVLFLaDR~~Lv~QA~~af~ 236 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKS------GWVKRVLFLADRNALVDQAYGAFE 236 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhc------chhheeeEEechHHHHHHHHHHHH
Confidence 358899999986654 5654 999999999999986 5577777653 224569999999999999998877
Q ss_pred HHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcC----CccccCceeEEEEecchhhhcCCcHHHH
Q 043110 132 KLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHT----SSFLHTNLRWIIFDEADRILELGFGKEI 207 (316)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~----~~~~~~~l~~lViDEad~l~~~~~~~~i 207 (316)
.+.-. ........+... ...++|.|+|...+...+... ..+....++++|+||||+ |.....
T Consensus 237 ~~~P~---~~~~n~i~~~~~-------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR----gi~~~~ 302 (875)
T COG4096 237 DFLPF---GTKMNKIEDKKG-------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR----GIYSEW 302 (875)
T ss_pred HhCCC---ccceeeeecccC-------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh----hHHhhh
Confidence 76532 222222211111 114789999999998877653 123445689999999999 455566
Q ss_pred HHHHHHhcc
Q 043110 208 EEILDILGS 216 (316)
Q Consensus 208 ~~i~~~l~~ 216 (316)
..|+.++..
T Consensus 303 ~~I~dYFdA 311 (875)
T COG4096 303 SSILDYFDA 311 (875)
T ss_pred HHHHHHHHH
Confidence 688888864
No 111
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.27 E-value=2.5e-11 Score=118.73 Aligned_cols=159 Identities=25% Similarity=0.252 Sum_probs=111.2
Q ss_pred CCcHHHHHHHHHHhCC----CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHH
Q 043110 58 APTKVQAQAIPVILSG----RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL 133 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g----~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 133 (316)
.+++-|+.+...+... +..++.+.||||||.+|+=.+-+.+.. |..+|+|+|-.+|..|+.+.++..
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~---------GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ---------GKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc---------CCEEEEEeccccchHHHHHHHHHH
Confidence 5688999999998765 469999999999999998777777765 566999999999999999999887
Q ss_pred HhhcCCceeEEeeCCC---ChHHHHHHHh-cCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhc---CCcHHH
Q 043110 134 LHRFRWIVPGYVMGGG---NRSKEKARLR-KGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILE---LGFGKE 206 (316)
Q Consensus 134 ~~~~~~~~~~~~~~~~---~~~~~~~~l~-~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~---~~~~~~ 206 (316)
+. ..+..++++. ...+.|.... ....|+|||-..++- .++++.++||||-|.-.- .+...+
T Consensus 269 Fg----~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~--------Pf~~LGLIIvDEEHD~sYKq~~~prYh 336 (730)
T COG1198 269 FG----AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFL--------PFKNLGLIIVDEEHDSSYKQEDGPRYH 336 (730)
T ss_pred hC----CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcC--------chhhccEEEEeccccccccCCcCCCcC
Confidence 65 2333334433 3334455544 558999999655443 346899999999996431 122333
Q ss_pred HHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHH
Q 043110 207 IEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLT 250 (316)
Q Consensus 207 i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~ 250 (316)
.+.+.-...+.. ++++|+-|||.+=+-...+
T Consensus 337 ARdvA~~Ra~~~-------------~~pvvLgSATPSLES~~~~ 367 (730)
T COG1198 337 ARDVAVLRAKKE-------------NAPVVLGSATPSLESYANA 367 (730)
T ss_pred HHHHHHHHHHHh-------------CCCEEEecCCCCHHHHHhh
Confidence 333332222211 7899999999775544444
No 112
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.27 E-value=5.1e-11 Score=119.12 Aligned_cols=186 Identities=20% Similarity=0.169 Sum_probs=123.4
Q ss_pred CCcHHHHHHHHHHhCC---C-cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHH
Q 043110 58 APTKVQAQAIPVILSG---R-DVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL 133 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g---~-d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 133 (316)
.+++.|..++..+... . .+++.||||+|||.+.+.++...+... .....+++++.|++.+++++++.++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-----~~~~~r~i~vlP~~t~ie~~~~r~~~~ 269 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-----IKLKSRVIYVLPFRTIIEDMYRRAKEI 269 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-----ccccceEEEEccHHHHHHHHHHHHHhh
Confidence 3488999999888743 3 689999999999999999888877652 113567999999999999999999987
Q ss_pred HhhcCCceeEEeeCCCChHHHHHH-----H---------hcCCcEEEeCcHHHHHHHhcCCccc-cC--ceeEEEEecch
Q 043110 134 LHRFRWIVPGYVMGGGNRSKEKAR-----L---------RKGISILVATPGHLLDHLKHTSSFL-HT--NLRWIIFDEAD 196 (316)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~-----l---------~~~~~IlV~Tp~~l~~~l~~~~~~~-~~--~l~~lViDEad 196 (316)
......... ..++.......... . .....+.++||-............. +. -.+.+|+||+|
T Consensus 270 ~~~~~~~~~-~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h 348 (733)
T COG1203 270 FGLFSVIGK-SLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVH 348 (733)
T ss_pred hcccccccc-cccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHH
Confidence 765432221 01222211111000 0 0113466666665554222211111 11 23689999999
Q ss_pred hhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcC
Q 043110 197 RILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLD 263 (316)
Q Consensus 197 ~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~ 263 (316)
.+.+......+..++..+... ...+|++|||+|+...+.....+.+...+...
T Consensus 349 ~~~~~~~~~~l~~~i~~l~~~--------------g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~ 401 (733)
T COG1203 349 LYADETMLAALLALLEALAEA--------------GVPVLLMSATLPPFLKEKLKKALGKGREVVEN 401 (733)
T ss_pred hhcccchHHHHHHHHHHHHhC--------------CCCEEEEecCCCHHHHHHHHHHHhcccceecc
Confidence 987764555666666666543 67999999999999999888877766655543
No 113
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.26 E-value=6.2e-11 Score=117.21 Aligned_cols=136 Identities=21% Similarity=0.198 Sum_probs=100.7
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHH
Q 043110 49 QLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYE 128 (316)
Q Consensus 49 ~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~ 128 (316)
+-.+.+|.. |+++|...--.+..| -++.+.||+|||+++.+|++..... |..+.|++|+..||.|-++
T Consensus 74 a~~R~lGm~-~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al~---------G~~VhvvT~ndyLA~RD~e 141 (913)
T PRK13103 74 AGKRVMGMR-HFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNALS---------GKGVHVVTVNDYLARRDAN 141 (913)
T ss_pred HHHHHhCCC-cchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHHHH
Confidence 333456765 899997665555555 4889999999999999999877665 5559999999999999999
Q ss_pred HHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHH-HHHHhcCC-----ccccCceeEEEEecchhhh
Q 043110 129 ILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHL-LDHLKHTS-----SFLHTNLRWIIFDEADRIL 199 (316)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~~~-----~~~~~~l~~lViDEad~l~ 199 (316)
++..+...++ +.++++.++.... +.+..+. ++|++||..-| +++|+..- ......+.+.||||+|.++
T Consensus 142 ~m~~l~~~lG-l~v~~i~~~~~~~-err~~Y~-~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 142 WMRPLYEFLG-LSVGIVTPFQPPE-EKRAAYA-ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred HHHHHhcccC-CEEEEECCCCCHH-HHHHHhc-CCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 9999998766 5666665555443 3444443 79999999876 44444321 1123678899999999876
No 114
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.26 E-value=2.1e-10 Score=100.76 Aligned_cols=152 Identities=21% Similarity=0.240 Sum_probs=106.9
Q ss_pred CCcHHHHHHHHHH----hCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHH
Q 043110 58 APTKVQAQAIPVI----LSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL 133 (316)
Q Consensus 58 ~p~~~Q~~~i~~i----l~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 133 (316)
++++.|+.+-..+ .+.++.++.|-||+|||... .+.++...+ .|.++.|.+|....|.+++.++++-
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMi-f~~i~~al~--------~G~~vciASPRvDVclEl~~Rlk~a 167 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMI-FQGIEQALN--------QGGRVCIASPRVDVCLELYPRLKQA 167 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhh-HHHHHHHHh--------cCCeEEEecCcccchHHHHHHHHHh
Confidence 6899998876554 46789999999999999874 445555444 3677999999999999999988876
Q ss_pred HhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHH
Q 043110 134 LHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDI 213 (316)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~ 213 (316)
+. .....+++|+....-+ .+++|+|...|+..-. .++++||||+|..--.. ...+....+.
T Consensus 168 F~---~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~--------aFD~liIDEVDAFP~~~-d~~L~~Av~~ 228 (441)
T COG4098 168 FS---NCDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQ--------AFDLLIIDEVDAFPFSD-DQSLQYAVKK 228 (441)
T ss_pred hc---cCCeeeEecCCchhcc-------ccEEEEehHHHHHHHh--------hccEEEEeccccccccC-CHHHHHHHHH
Confidence 54 3455667766554322 4799999888877554 57899999999854221 1222222222
Q ss_pred hccCcccccCCCCccccccceEEEEeeecchhHHHHHH
Q 043110 214 LGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTK 251 (316)
Q Consensus 214 l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~ 251 (316)
-. .+..-+|.+|||.++.++.-+.
T Consensus 229 ar--------------k~~g~~IylTATp~k~l~r~~~ 252 (441)
T COG4098 229 AR--------------KKEGATIYLTATPTKKLERKIL 252 (441)
T ss_pred hh--------------cccCceEEEecCChHHHHHHhh
Confidence 11 2266789999999987765443
No 115
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.24 E-value=1.7e-10 Score=118.21 Aligned_cols=65 Identities=23% Similarity=0.320 Sum_probs=53.1
Q ss_pred CCCCCcHHHHHHHHHH----hCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHH
Q 043110 55 GFEAPTKVQAQAIPVI----LSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYE 128 (316)
Q Consensus 55 g~~~p~~~Q~~~i~~i----l~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~ 128 (316)
|| ++++-|.+.+..+ .+++++++.||||+|||++|++|++..... .+.+++|-++|+.|.+|+.+
T Consensus 255 ~~-e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~--------~~~~vvIsT~T~~LQ~Ql~~ 323 (928)
T PRK08074 255 KY-EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKK--------KEEPVVISTYTIQLQQQLLE 323 (928)
T ss_pred CC-cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhc--------cCCeEEEEcCCHHHHHHHHH
Confidence 45 4899998865443 467889999999999999999999876543 24459999999999999876
No 116
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.22 E-value=3.4e-11 Score=94.14 Aligned_cols=140 Identities=20% Similarity=0.181 Sum_probs=79.9
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCCh
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNR 151 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (316)
.|+-.++...+|+|||--.+.-++..... .+.++|||.|||.++..+++.++.. + .. +.. ....
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~--------~~~rvLvL~PTRvva~em~~aL~~~----~-~~--~~t-~~~~ 66 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK--------RRLRVLVLAPTRVVAEEMYEALKGL----P-VR--FHT-NARM 66 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH--------TT--EEEEESSHHHHHHHHHHTTTS----S-EE--EES-TTSS
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH--------ccCeEEEecccHHHHHHHHHHHhcC----C-cc--cCc-eeee
Confidence 45557899999999999776555554443 2566999999999998888777542 1 11 111 1110
Q ss_pred HHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccc
Q 043110 152 SKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNV 231 (316)
Q Consensus 152 ~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~ 231 (316)
. ....+.-|-|.|.+.+...+.+ .....+.+++|+||||.. |.. .-.....+..+... .
T Consensus 67 ~----~~~g~~~i~vMc~at~~~~~~~--p~~~~~yd~II~DEcH~~-Dp~-sIA~rg~l~~~~~~-------------g 125 (148)
T PF07652_consen 67 R----THFGSSIIDVMCHATYGHFLLN--PCRLKNYDVIIMDECHFT-DPT-SIAARGYLRELAES-------------G 125 (148)
T ss_dssp --------SSSSEEEEEHHHHHHHHHT--SSCTTS-SEEEECTTT---SHH-HHHHHHHHHHHHHT-------------T
T ss_pred c----cccCCCcccccccHHHHHHhcC--cccccCccEEEEeccccC-CHH-HHhhheeHHHhhhc-------------c
Confidence 0 1123456889999988887765 333468999999999974 321 11122223332221 1
Q ss_pred cceEEEEeeecchhHHH
Q 043110 232 KRQNLLLSATLNEKVNH 248 (316)
Q Consensus 232 ~~q~i~~SAT~~~~v~~ 248 (316)
.+.+|++|||.|.....
T Consensus 126 ~~~~i~mTATPPG~~~~ 142 (148)
T PF07652_consen 126 EAKVIFMTATPPGSEDE 142 (148)
T ss_dssp S-EEEEEESS-TT---S
T ss_pred CeeEEEEeCCCCCCCCC
Confidence 46899999999976643
No 117
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.20 E-value=1.7e-10 Score=113.55 Aligned_cols=139 Identities=22% Similarity=0.279 Sum_probs=104.6
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHH
Q 043110 46 LCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLL 125 (316)
Q Consensus 46 l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q 125 (316)
+.++..+.+|.. |+++|.-.--.+..|+ ++...||+|||++..+|++..... |..+-+++|+..||.|
T Consensus 69 vrEa~~R~~g~~-~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~---------G~~v~vvT~neyLA~R 136 (796)
T PRK12906 69 AREGAKRVLGLR-PFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT---------GKGVHVVTVNEYLSSR 136 (796)
T ss_pred HHHHHHHHhCCC-CchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc---------CCCeEEEeccHHHHHh
Confidence 344555567876 9999988776777776 999999999999999999887766 5559999999999999
Q ss_pred HHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHH-HHHHhcC-----CccccCceeEEEEecchhhh
Q 043110 126 VYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHL-LDHLKHT-----SSFLHTNLRWIIFDEADRIL 199 (316)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~~-----~~~~~~~l~~lViDEad~l~ 199 (316)
-++.+..+...++ +.++++.++.+.... +..+ .++|+.||...| +++++.. .......+.+.||||+|.++
T Consensus 137 d~e~~~~~~~~LG-l~vg~i~~~~~~~~r-~~~y-~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 137 DATEMGELYRWLG-LTVGLNLNSMSPDEK-RAAY-NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred hHHHHHHHHHhcC-CeEEEeCCCCCHHHH-HHHh-cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 9999999998876 566666665554433 3333 479999999866 3444331 11123567899999999876
No 118
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.20 E-value=6.9e-10 Score=96.92 Aligned_cols=137 Identities=22% Similarity=0.282 Sum_probs=97.6
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHH
Q 043110 48 DQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVY 127 (316)
Q Consensus 48 ~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~ 127 (316)
++..+.+|+. |++.|..++-.+..|+ +++..||-|||++..+|++-.... |..|-|++.+..||..=+
T Consensus 68 ea~~r~~g~~-p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~---------G~~V~vvT~NdyLA~RD~ 135 (266)
T PF07517_consen 68 EAARRTLGLR-PYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ---------GKGVHVVTSNDYLAKRDA 135 (266)
T ss_dssp HHHHHHTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT---------SS-EEEEESSHHHHHHHH
T ss_pred HHHHHHcCCc-ccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh---------cCCcEEEeccHHHhhccH
Confidence 3444456776 9999999987777776 999999999999998888766655 455999999999999999
Q ss_pred HHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHH-HHHhcCC----cc-ccCceeEEEEecchhhh
Q 043110 128 EILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLL-DHLKHTS----SF-LHTNLRWIIFDEADRIL 199 (316)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~-~~l~~~~----~~-~~~~l~~lViDEad~l~ 199 (316)
+.+..+...++ +.+++..++..... .+..+ .++|+.+|...+. ++++..- .. ....+.++||||+|.++
T Consensus 136 ~~~~~~y~~LG-lsv~~~~~~~~~~~-r~~~Y-~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 136 EEMRPFYEFLG-LSVGIITSDMSSEE-RREAY-AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHHHHHHTT---EEEEETTTEHHH-HHHHH-HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHHHHHHHhh-hccccCccccCHHH-HHHHH-hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 99999998876 66666666655433 33333 3589999998774 4444321 11 24678999999999876
No 119
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.19 E-value=2.9e-10 Score=110.07 Aligned_cols=138 Identities=22% Similarity=0.299 Sum_probs=104.6
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHH
Q 043110 47 CDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLV 126 (316)
Q Consensus 47 ~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~ 126 (316)
.++..+.+|+. |+++|....-.++.|+ ++.+.||+|||++..+|++..... |..+.|++|+..||.|-
T Consensus 68 REa~~R~lg~r-~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~---------G~~VhvvT~NdyLA~RD 135 (764)
T PRK12326 68 REAAERTLGLR-PFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ---------GRRVHVITVNDYLARRD 135 (764)
T ss_pred HHHHHHHcCCC-cchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc---------CCCeEEEcCCHHHHHHH
Confidence 33444456876 9999999988888875 789999999999999999877765 55599999999999999
Q ss_pred HHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHH-HHHHhcC-----CccccCceeEEEEecchhhh
Q 043110 127 YEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHL-LDHLKHT-----SSFLHTNLRWIIFDEADRIL 199 (316)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~~-----~~~~~~~l~~lViDEad~l~ 199 (316)
++.+..+...++ +.++++.++.+.. +.+..+ .+||+.+|...+ +++++.. .......+.+.|+||+|.++
T Consensus 136 ae~m~~ly~~LG-Lsvg~i~~~~~~~-err~aY-~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 136 AEWMGPLYEALG-LTVGWITEESTPE-ERRAAY-ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred HHHHHHHHHhcC-CEEEEECCCCCHH-HHHHHH-cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 999999998876 6666666655544 444444 479999999764 3333321 11233567899999999876
No 120
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.08 E-value=1.8e-09 Score=106.51 Aligned_cols=138 Identities=21% Similarity=0.237 Sum_probs=101.6
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHH
Q 043110 47 CDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLV 126 (316)
Q Consensus 47 ~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~ 126 (316)
.++..+.+|.. |+++|-..--.+..| -++.+.||.|||+++.+|+.-.... |..|-||+++..||..-
T Consensus 75 REa~~R~lG~r-~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpaylnAL~---------GkgVhVVTvNdYLA~RD 142 (939)
T PRK12902 75 REASKRVLGMR-HFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLNALT---------GKGVHVVTVNDYLARRD 142 (939)
T ss_pred HHHHHHHhCCC-cchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHHhhc---------CCCeEEEeCCHHHHHhH
Confidence 33444456776 899997766555555 4899999999999999998876655 44499999999999999
Q ss_pred HHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHH-----HHHHhcC-CccccCceeEEEEecchhhh
Q 043110 127 YEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHL-----LDHLKHT-SSFLHTNLRWIIFDEADRIL 199 (316)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l-----~~~l~~~-~~~~~~~l~~lViDEad~l~ 199 (316)
++++..+...++ +.++++.++.+.. +.+..+ .+||+.||+..| .+.+... .......+.+.||||+|.++
T Consensus 143 ae~m~~vy~~LG-Ltvg~i~~~~~~~-err~aY-~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 143 AEWMGQVHRFLG-LSVGLIQQDMSPE-ERKKNY-ACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HHHHHHHHHHhC-CeEEEECCCCChH-HHHHhc-CCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 999999998876 5666665555443 333333 589999999876 4444321 22344678899999999876
No 121
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.06 E-value=2.3e-09 Score=96.09 Aligned_cols=156 Identities=23% Similarity=0.251 Sum_probs=85.1
Q ss_pred HHHHHHHHHh-------------CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHH
Q 043110 62 VQAQAIPVIL-------------SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYE 128 (316)
Q Consensus 62 ~Q~~~i~~il-------------~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~ 128 (316)
+|.+++..++ ..+.+++.-.+|.|||+..+.. +..+....... ....+|||+|. .+..|+.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~-~~~l~~~~~~~---~~~~~LIv~P~-~l~~~W~~ 75 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIAL-ISYLKNEFPQR---GEKKTLIVVPS-SLLSQWKE 75 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHH-HHHHHHCCTTS---S-S-EEEEE-T-TTHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhh-hhhhhhccccc---cccceeEeecc-chhhhhhh
Confidence 4666666553 3346899999999999886543 33443322211 11239999999 88899999
Q ss_pred HHHHHHhhcCCceeEEeeCCCC-hHHHHHHHhcCCcEEEeCcHHHHHHHhcC--CccccCceeEEEEecchhhhcCCcHH
Q 043110 129 ILQKLLHRFRWIVPGYVMGGGN-RSKEKARLRKGISILVATPGHLLDHLKHT--SSFLHTNLRWIIFDEADRILELGFGK 205 (316)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~--~~~~~~~l~~lViDEad~l~~~~~~~ 205 (316)
.+.++..... .. ...+.+.. ............+++|+|.+.+....... ..+...+.+++|+||+|.+-+. ..
T Consensus 76 E~~~~~~~~~-~~-v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~--~s 151 (299)
T PF00176_consen 76 EIEKWFDPDS-LR-VIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK--DS 151 (299)
T ss_dssp HHHHHSGT-T-S--EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT--TS
T ss_pred hhcccccccc-cc-ccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccc--cc
Confidence 9988874322 23 33344444 22222222345789999999988110000 0111135889999999998432 22
Q ss_pred HHHHHHHHhccCcccccCCCCccccccceEEEEeeec
Q 043110 206 EIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATL 242 (316)
Q Consensus 206 ~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~ 242 (316)
.....+..+. ....+++|||.
T Consensus 152 ~~~~~l~~l~----------------~~~~~lLSgTP 172 (299)
T PF00176_consen 152 KRYKALRKLR----------------ARYRWLLSGTP 172 (299)
T ss_dssp HHHHHHHCCC----------------ECEEEEE-SS-
T ss_pred cccccccccc----------------cceEEeecccc
Confidence 2223333233 45678899995
No 122
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.06 E-value=4e-09 Score=105.00 Aligned_cols=65 Identities=29% Similarity=0.358 Sum_probs=52.0
Q ss_pred CCCCCcHHHHHHHHHHh---C------CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHH
Q 043110 55 GFEAPTKVQAQAIPVIL---S------GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLL 125 (316)
Q Consensus 55 g~~~p~~~Q~~~i~~il---~------g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q 125 (316)
||+ +++-|.+....+. . ++.+++.||||+|||++|++|++...... +.++||-+.|..|-+|
T Consensus 23 ~~e-~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~--------~k~vVIST~T~~LQeQ 93 (697)
T PRK11747 23 GFI-PRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAE--------KKKLVISTATVALQEQ 93 (697)
T ss_pred CCC-cCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHc--------CCeEEEEcCCHHHHHH
Confidence 564 8999988655543 3 36799999999999999999998766542 3449999999999999
Q ss_pred HHH
Q 043110 126 VYE 128 (316)
Q Consensus 126 ~~~ 128 (316)
+..
T Consensus 94 L~~ 96 (697)
T PRK11747 94 LVS 96 (697)
T ss_pred HHh
Confidence 863
No 123
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.06 E-value=1.2e-09 Score=107.68 Aligned_cols=138 Identities=21% Similarity=0.237 Sum_probs=99.8
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHH
Q 043110 47 CDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLV 126 (316)
Q Consensus 47 ~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~ 126 (316)
.++..+.+|+. |+++|....-.+. +.-++.+.||.|||+++.+|+.-.... |..|.|++++..||.+-
T Consensus 66 rEa~~R~lG~r-~ydvQlig~l~L~--~G~IaEm~TGEGKTL~a~l~ayl~aL~---------G~~VhVvT~NdyLA~RD 133 (870)
T CHL00122 66 REASFRTLGLR-HFDVQLIGGLVLN--DGKIAEMKTGEGKTLVATLPAYLNALT---------GKGVHIVTVNDYLAKRD 133 (870)
T ss_pred HHHHHHHhCCC-CCchHhhhhHhhc--CCccccccCCCCchHHHHHHHHHHHhc---------CCceEEEeCCHHHHHHH
Confidence 34454567886 8999977654444 446999999999999999998654443 44499999999999999
Q ss_pred HHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHH-HHHHhcC-----CccccCceeEEEEecchhhh
Q 043110 127 YEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHL-LDHLKHT-----SSFLHTNLRWIIFDEADRIL 199 (316)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~~-----~~~~~~~l~~lViDEad~l~ 199 (316)
++++..+...++ +.+++..++.+.. +.+..+ .+||+.+|...+ +++++.. .......+.+.|+||+|.++
T Consensus 134 ~e~m~pvy~~LG-Lsvg~i~~~~~~~-err~aY-~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 134 QEWMGQIYRFLG-LTVGLIQEGMSSE-ERKKNY-LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HHHHHHHHHHcC-CceeeeCCCCChH-HHHHhc-CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 999999998877 6666666655553 333444 369999999754 2333321 11233568899999999876
No 124
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.03 E-value=1.2e-08 Score=104.11 Aligned_cols=162 Identities=15% Similarity=0.211 Sum_probs=103.2
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHH
Q 043110 58 APTKVQAQAIPVIL----SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL 133 (316)
Q Consensus 58 ~p~~~Q~~~i~~il----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 133 (316)
.++++|...+..+. +|.+.|+.-..|.|||+..+. ++..+..... ....+|||||. ++..|+.+.+.++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIa-lL~~L~~~~~-----~~gp~LIVvP~-SlL~nW~~Ei~kw 241 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTIS-LLGYLHEYRG-----ITGPHMVVAPK-STLGNWMNEIRRF 241 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHH-HHHHHHHhcC-----CCCCEEEEeCh-HHHHHHHHHHHHH
Confidence 58999999998775 678899999999999997533 4444433111 12238999996 6678888888887
Q ss_pred HhhcCCceeEEeeCCCChHHHHH-H--HhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHH
Q 043110 134 LHRFRWIVPGYVMGGGNRSKEKA-R--LRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 210 (316)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~-~--l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i 210 (316)
+ +...+..++|......... . .....+|+|+|.+.+...... +.--..++||+||||++-. ....+...
T Consensus 242 ~---p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~---L~k~~W~~VIvDEAHrIKN--~~Sklska 313 (1033)
T PLN03142 242 C---PVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA---LKRFSWRYIIIDEAHRIKN--ENSLLSKT 313 (1033)
T ss_pred C---CCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH---hccCCCCEEEEcCccccCC--HHHHHHHH
Confidence 5 3344444444332222111 1 123578999999988654332 1112467999999999754 33445555
Q ss_pred HHHhccCcccccCCCCccccccceEEEEeeecc-hhHHHHH
Q 043110 211 LDILGSRNIASIGEGNEVSNVKRQNLLLSATLN-EKVNHLT 250 (316)
Q Consensus 211 ~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~-~~v~~~~ 250 (316)
+..+. ....+++|+|.- .++.++-
T Consensus 314 lr~L~----------------a~~RLLLTGTPlqNnl~ELw 338 (1033)
T PLN03142 314 MRLFS----------------TNYRLLITGTPLQNNLHELW 338 (1033)
T ss_pred HHHhh----------------cCcEEEEecCCCCCCHHHHH
Confidence 55554 334588899973 3444443
No 125
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.99 E-value=1.4e-08 Score=101.08 Aligned_cols=166 Identities=19% Similarity=0.176 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCc
Q 043110 61 KVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWI 140 (316)
Q Consensus 61 ~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~ 140 (316)
....+.+.++.+.+-+++.|+||||||...-.-+++... ..+..+.+.-|.|--|..+++.+.+-...-...
T Consensus 53 ~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--------~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~ 124 (845)
T COG1643 53 AVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--------GIAGKIGCTQPRRLAARSVAERVAEELGEKLGE 124 (845)
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--------ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCc
Confidence 344555666667788999999999999873222332221 123457777799877766666554443322223
Q ss_pred eeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhccCccc
Q 043110 141 VPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIA 220 (316)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~ 220 (316)
.+++.+...+. ......|-+.|.|.|+..+.+. ..++.++++|+||+|.= .-+..-++..+...
T Consensus 125 ~VGY~iRfe~~------~s~~Trik~mTdGiLlrei~~D--~~Ls~ys~vIiDEaHER-----Sl~tDilLgllk~~--- 188 (845)
T COG1643 125 TVGYSIRFESK------VSPRTRIKVMTDGILLREIQND--PLLSGYSVVIIDEAHER-----SLNTDILLGLLKDL--- 188 (845)
T ss_pred eeeEEEEeecc------CCCCceeEEeccHHHHHHHhhC--cccccCCEEEEcchhhh-----hHHHHHHHHHHHHH---
Confidence 33443322221 1234579999999999999853 34679999999999962 22222222222210
Q ss_pred ccCCCCccccccceEEEEeeecchhHHHHHHHhcCCC
Q 043110 221 SIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETP 257 (316)
Q Consensus 221 ~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p 257 (316)
.....+...+|+||||+.. +.|...+-.-|
T Consensus 189 -----~~~rr~DLKiIimSATld~--~rfs~~f~~ap 218 (845)
T COG1643 189 -----LARRRDDLKLIIMSATLDA--ERFSAYFGNAP 218 (845)
T ss_pred -----HhhcCCCceEEEEecccCH--HHHHHHcCCCC
Confidence 0011114789999999973 44554443333
No 126
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=98.98 E-value=7.6e-09 Score=104.93 Aligned_cols=175 Identities=17% Similarity=0.166 Sum_probs=102.8
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHh
Q 043110 58 APTKVQAQAIPVILSG--RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLH 135 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 135 (316)
.|.|+|......++.. ..+++.-.+|.|||.-+.+-+-..+... ..-++|||||. .|+.|+...+.+.+.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g-------~~~rvLIVvP~-sL~~QW~~El~~kF~ 223 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG-------RAERVLILVPE-TLQHQWLVEMLRRFN 223 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC-------CCCcEEEEcCH-HHHHHHHHHHHHHhC
Confidence 4899999988776543 3699999999999998866554444331 22359999998 899999888865442
Q ss_pred hcCCceeEEeeCCCChHHHHH---HHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcC--CcHHHHHHH
Q 043110 136 RFRWIVPGYVMGGGNRSKEKA---RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILEL--GFGKEIEEI 210 (316)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~---~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~--~~~~~i~~i 210 (316)
.... ++++........ ......+++|+|.+.+...-.....+.-...+++|+||||++-.. .-...+ ..
T Consensus 224 ----l~~~-i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y-~~ 297 (956)
T PRK04914 224 ----LRFS-LFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREY-QV 297 (956)
T ss_pred ----CCeE-EEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHH-HH
Confidence 1222 222222111100 111235799999887654111001112236789999999998621 111222 23
Q ss_pred HHHhccCcccccCCCCccccccceEEEEeeecch-hHH-HHHHHhcCCCEEE
Q 043110 211 LDILGSRNIASIGEGNEVSNVKRQNLLLSATLNE-KVN-HLTKISLETPVLI 260 (316)
Q Consensus 211 ~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~-~v~-~~~~~~l~~p~~i 260 (316)
+..+... ...++++|||.-. ... .+....+-+|...
T Consensus 298 v~~La~~--------------~~~~LLLTATP~q~~~~e~falL~lLdP~~f 335 (956)
T PRK04914 298 VEQLAEV--------------IPGVLLLTATPEQLGQESHFARLRLLDPDRF 335 (956)
T ss_pred HHHHhhc--------------cCCEEEEEcCcccCCcHHHHHhhhhhCCCcC
Confidence 3333221 3468999999753 233 3444455567654
No 127
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.97 E-value=3.1e-08 Score=98.70 Aligned_cols=174 Identities=20% Similarity=0.196 Sum_probs=111.3
Q ss_pred CcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcC
Q 043110 59 PTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFR 138 (316)
Q Consensus 59 p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 138 (316)
.++.+...+.++.+.+.+++.|.||+|||.-.---+++...... ....+++--|.|--|..+++++..--....
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~------~~~~IicTQPRRIsAIsvAeRVa~ER~~~~ 247 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG------AACNIICTQPRRISAISVAERVAKERGESL 247 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC------CCCeEEecCCchHHHHHHHHHHHHHhcccc
Confidence 45677888899999999999999999999874444555544422 345577778999988888876544221112
Q ss_pred CceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhh-cCCcHHH-HHHHHHHhcc
Q 043110 139 WIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRIL-ELGFGKE-IEEILDILGS 216 (316)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~-~~~~~~~-i~~i~~~l~~ 216 (316)
...+++..+..... .....++.||.|.|+..+.. ...+..+..+|+||+|.=. +..|.-. +..++..
T Consensus 248 g~~VGYqvrl~~~~------s~~t~L~fcTtGvLLr~L~~--~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~--- 316 (924)
T KOG0920|consen 248 GEEVGYQVRLESKR------SRETRLLFCTTGVLLRRLQS--DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPR--- 316 (924)
T ss_pred CCeeeEEEeeeccc------CCceeEEEecHHHHHHHhcc--CcccccCceeeeeeEEEccCCcccHHHHHHHHhhh---
Confidence 23333333222211 12257999999999999986 4455789999999999532 2233322 2222222
Q ss_pred CcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCC
Q 043110 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265 (316)
Q Consensus 217 ~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 265 (316)
++..++|+||||+. .+..+.+..+.-.+.+..-
T Consensus 317 -------------~p~LkvILMSAT~d---ae~fs~YF~~~pvi~i~gr 349 (924)
T KOG0920|consen 317 -------------NPDLKVILMSATLD---AELFSDYFGGCPVITIPGR 349 (924)
T ss_pred -------------CCCceEEEeeeecc---hHHHHHHhCCCceEeecCC
Confidence 23889999999998 4444445545555555443
No 128
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.91 E-value=3.5e-09 Score=106.08 Aligned_cols=156 Identities=20% Similarity=0.211 Sum_probs=109.4
Q ss_pred CCcHHHHHHHHHHhCCC-cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhh
Q 043110 58 APTKVQAQAIPVILSGR-DVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHR 136 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g~-d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~ 136 (316)
..+|+|.++++.+.+.. ++++.+|+|||||.|+.++++. .....++++++|..+.+..+++.+.+-...
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~----------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~ 1212 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR----------PDTIGRAVYIAPLEEIADEQYRDWEKKFSK 1212 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC----------CccceEEEEecchHHHHHHHHHHHHHhhcc
Confidence 34899999999887654 5999999999999999887765 124567999999999998888776665554
Q ss_pred cCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHH------HHHHH
Q 043110 137 FRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGK------EIEEI 210 (316)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~------~i~~i 210 (316)
.......-+.|...... .+....+|+|+||+++-.+ + ....+++.|.||+|.+.+.+ +. -++.|
T Consensus 1213 ~~G~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~d~l-q-----~iQ~v~l~i~d~lh~igg~~-g~v~evi~S~r~i 1282 (1674)
T KOG0951|consen 1213 LLGLRIVKLTGETSLDL---KLLQKGQVIISTPEQWDLL-Q-----SIQQVDLFIVDELHLIGGVY-GAVYEVICSMRYI 1282 (1674)
T ss_pred ccCceEEecCCccccch---HHhhhcceEEechhHHHHH-h-----hhhhcceEeeehhhhhcccC-CceEEEEeeHHHH
Confidence 44344443333333221 2233458999999997654 2 23578999999999887542 11 15666
Q ss_pred HHHhccCcccccCCCCccccccceEEEEeeecchhHHHH
Q 043110 211 LDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHL 249 (316)
Q Consensus 211 ~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~ 249 (316)
-..+-+ +.+++.+|..+.. ...+
T Consensus 1283 a~q~~k---------------~ir~v~ls~~lan-a~d~ 1305 (1674)
T KOG0951|consen 1283 ASQLEK---------------KIRVVALSSSLAN-ARDL 1305 (1674)
T ss_pred HHHHHh---------------heeEEEeehhhcc-chhh
Confidence 666665 7889999888763 3444
No 129
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.91 E-value=1.7e-08 Score=100.48 Aligned_cols=74 Identities=24% Similarity=0.274 Sum_probs=59.5
Q ss_pred HHcCCCCCcHHHHHHHHHHh----CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHH
Q 043110 52 ERLGFEAPTKVQAQAIPVIL----SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVY 127 (316)
Q Consensus 52 ~~~g~~~p~~~Q~~~i~~il----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~ 127 (316)
..+...+|++.|.+.+..+. .|+.+++.||||+|||++|++|++....... ..++|.++|+.|-.|+.
T Consensus 9 ~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~--------~~viist~t~~lq~q~~ 80 (654)
T COG1199 9 VAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEG--------KKVIISTRTKALQEQLL 80 (654)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcC--------CcEEEECCCHHHHHHHH
Confidence 34566679999998875543 4556999999999999999999998876532 44999999999999998
Q ss_pred HHHHHH
Q 043110 128 EILQKL 133 (316)
Q Consensus 128 ~~~~~~ 133 (316)
+....+
T Consensus 81 ~~~~~~ 86 (654)
T COG1199 81 EEDLPI 86 (654)
T ss_pred Hhhcch
Confidence 776554
No 130
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.82 E-value=2.9e-08 Score=99.33 Aligned_cols=76 Identities=21% Similarity=0.204 Sum_probs=61.6
Q ss_pred HcCCCCCcHHHHHHHHHH----hCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHH
Q 043110 53 RLGFEAPTKVQAQAIPVI----LSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYE 128 (316)
Q Consensus 53 ~~g~~~p~~~Q~~~i~~i----l~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~ 128 (316)
.|.|..++|.|.+.+..+ ..|+++++.+|||+|||++.+.|++....... ...+++|.+.|..-..|..+
T Consensus 5 ~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~------~~~kIiy~sRThsQl~q~i~ 78 (705)
T TIGR00604 5 YFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP------EVRKIIYASRTHSQLEQATE 78 (705)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc------ccccEEEEcccchHHHHHHH
Confidence 378887899998876554 47889999999999999999999998775422 23569999999998888888
Q ss_pred HHHHHH
Q 043110 129 ILQKLL 134 (316)
Q Consensus 129 ~~~~~~ 134 (316)
.+++..
T Consensus 79 Elk~~~ 84 (705)
T TIGR00604 79 ELRKLM 84 (705)
T ss_pred HHHhhh
Confidence 888753
No 131
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.78 E-value=1.6e-07 Score=94.45 Aligned_cols=145 Identities=21% Similarity=0.241 Sum_probs=84.8
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHH-----HHHhh-cCCc-eeEEee
Q 043110 74 RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQ-----KLLHR-FRWI-VPGYVM 146 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~-----~~~~~-~~~~-~~~~~~ 146 (316)
.++.+.++||+|||.+|+-.++..... ....+.||+||+.+.-+.+.+.+. ..+.. ++.. .....+
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~-------~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~ 132 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQK-------YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVI 132 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHH-------cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEE
Confidence 378999999999999998877666544 123569999999999888876654 22211 2222 112222
Q ss_pred CCC--------ChHHHHHHHhc-------CCcEEEeCcHHHHHHHh-cC---------Cccc---cCce-eEEEEecchh
Q 043110 147 GGG--------NRSKEKARLRK-------GISILVATPGHLLDHLK-HT---------SSFL---HTNL-RWIIFDEADR 197 (316)
Q Consensus 147 ~~~--------~~~~~~~~l~~-------~~~IlV~Tp~~l~~~l~-~~---------~~~~---~~~l-~~lViDEad~ 197 (316)
.+. +.....+.+.. ..+|+|.|-+.|..-.. +. .... +... -.+|+||.|+
T Consensus 133 ~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~ 212 (986)
T PRK15483 133 NAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHR 212 (986)
T ss_pred ecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCC
Confidence 211 22333333332 36899999988754211 00 0011 1111 2799999999
Q ss_pred hhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecch
Q 043110 198 ILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNE 244 (316)
Q Consensus 198 l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~ 244 (316)
+-.. ...+..| ..+. ..-++.+|||.+.
T Consensus 213 ~~~~--~k~~~~i-~~ln----------------pl~~lrysAT~~~ 240 (986)
T PRK15483 213 FPRD--NKFYQAI-EALK----------------PQMIIRFGATFPD 240 (986)
T ss_pred CCcc--hHHHHHH-HhcC----------------cccEEEEeeecCC
Confidence 8542 2233444 3332 1135779999987
No 132
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.77 E-value=3.9e-08 Score=96.72 Aligned_cols=142 Identities=15% Similarity=0.086 Sum_probs=91.8
Q ss_pred EEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChH---H
Q 043110 77 LVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRS---K 153 (316)
Q Consensus 77 li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 153 (316)
+..+-+|||||..|+-.+-..+.. |..+||++|...|+.|+.+.++..+. ...+..++++.+.. .
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~---------Gk~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~ 231 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRA---------GRGALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYR 231 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHc---------CCeEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHH
Confidence 334446999999997766666654 55599999999999999999987653 12334455554443 2
Q ss_pred HHHHHhcC-CcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhc---CCcHHHHHHHHHHhccCcccccCCCCccc
Q 043110 154 EKARLRKG-ISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILE---LGFGKEIEEILDILGSRNIASIGEGNEVS 229 (316)
Q Consensus 154 ~~~~l~~~-~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~---~~~~~~i~~i~~~l~~~~~~~~~~~~~~~ 229 (316)
.+..+..+ ..|+|||-..++- .+.++.++|+||-|.-.- .+...+.+.+.....+..
T Consensus 232 ~w~~~~~G~~~IViGtRSAvFa--------P~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~----------- 292 (665)
T PRK14873 232 RWLAVLRGQARVVVGTRSAVFA--------PVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQH----------- 292 (665)
T ss_pred HHHHHhCCCCcEEEEcceeEEe--------ccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHc-----------
Confidence 33344444 7899999544332 456889999999985431 122223333333222211
Q ss_pred cccceEEEEeeecchhHHHHHH
Q 043110 230 NVKRQNLLLSATLNEKVNHLTK 251 (316)
Q Consensus 230 ~~~~q~i~~SAT~~~~v~~~~~ 251 (316)
+..+|+.|||.+-+....+.
T Consensus 293 --~~~lvLgSaTPSles~~~~~ 312 (665)
T PRK14873 293 --GCALLIGGHARTAEAQALVE 312 (665)
T ss_pred --CCcEEEECCCCCHHHHHHHh
Confidence 78999999998866655544
No 133
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.76 E-value=1e-07 Score=95.84 Aligned_cols=168 Identities=22% Similarity=0.184 Sum_probs=101.6
Q ss_pred CCcHHHHHHHHHHhC--------CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHH
Q 043110 58 APTKVQAQAIPVILS--------GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEI 129 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~--------g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~ 129 (316)
.-+.+|-+|+..+.. |-=++--|.||+|||++=.= ++..+.. ...|++..|..-.|.|..|..+.
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd------~~~g~RfsiALGLRTLTLQTGda 480 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRD------DKQGARFAIALGLRSLTLQTGHA 480 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCC------CCCCceEEEEccccceeccchHH
Confidence 346799999988763 22367789999999998321 2222322 24577888888888888888888
Q ss_pred HHHHHhhcCCceeEEeeCCCChHH-------------------------------------------HHHHHhc------
Q 043110 130 LQKLLHRFRWIVPGYVMGGGNRSK-------------------------------------------EKARLRK------ 160 (316)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~l~~------ 160 (316)
+++...- +.-...+++|+..... ....+.+
T Consensus 481 ~r~rL~L-~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~r 559 (1110)
T TIGR02562 481 LKTRLNL-SDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKT 559 (1110)
T ss_pred HHHhcCC-CccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhh
Confidence 7765421 1112222222211100 0000110
Q ss_pred --CCcEEEeCcHHHHHHHhcCC--ccccC--c--eeEEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCcccccc
Q 043110 161 --GISILVATPGHLLDHLKHTS--SFLHT--N--LRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVK 232 (316)
Q Consensus 161 --~~~IlV~Tp~~l~~~l~~~~--~~~~~--~--l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~ 232 (316)
...++|||++.++....... ...+. . =+.|||||+|.. |......+..+++.+... .
T Consensus 560 ll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaY-D~~~~~~L~rlL~w~~~l--------------G 624 (1110)
T TIGR02562 560 LLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDY-EPEDLPALLRLVQLAGLL--------------G 624 (1110)
T ss_pred hhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccC-CHHHHHHHHHHHHHHHHc--------------C
Confidence 15799999999987763211 11111 1 258999999974 333444566666544332 6
Q ss_pred ceEEEEeeecchhHHH
Q 043110 233 RQNLLLSATLNEKVNH 248 (316)
Q Consensus 233 ~q~i~~SAT~~~~v~~ 248 (316)
..++++|||+|+.+..
T Consensus 625 ~~VlLmSATLP~~l~~ 640 (1110)
T TIGR02562 625 SRVLLSSATLPPALVK 640 (1110)
T ss_pred CCEEEEeCCCCHHHHH
Confidence 7899999999998765
No 134
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.75 E-value=1.3e-07 Score=93.36 Aligned_cols=138 Identities=22% Similarity=0.259 Sum_probs=99.9
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHH
Q 043110 47 CDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLV 126 (316)
Q Consensus 47 ~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~ 126 (316)
.++..+.+|.. |+++|...--.+..|+ ++.+.||-|||++..+|+.-.... |..|-|++....||.-=
T Consensus 68 REA~~R~lG~r-~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~---------GkgVhVVTvNdYLA~RD 135 (925)
T PRK12903 68 REATKRVLGKR-PYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALT---------GKGVIVSTVNEYLAERD 135 (925)
T ss_pred HHHHHHHhCCC-cCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhc---------CCceEEEecchhhhhhh
Confidence 34444456875 8999988776666664 799999999999999998765544 34488999999999998
Q ss_pred HHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHH-HHHHhcCC-----ccccCceeEEEEecchhhh
Q 043110 127 YEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHL-LDHLKHTS-----SFLHTNLRWIIFDEADRIL 199 (316)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~~~-----~~~~~~l~~lViDEad~l~ 199 (316)
.+++..+...++ +.+++...+.... +.+..+ .+||+.||...| +++++..- ......+.+.|+||+|.++
T Consensus 136 ae~mg~vy~fLG-LsvG~i~~~~~~~-~rr~aY-~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 136 AEEMGKVFNFLG-LSVGINKANMDPN-LKREAY-ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred HHHHHHHHHHhC-CceeeeCCCCChH-HHHHhc-cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 899999888776 5556665554443 333334 479999999865 44554321 1233568899999999876
No 135
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=98.68 E-value=1.5e-08 Score=93.13 Aligned_cols=156 Identities=15% Similarity=0.160 Sum_probs=101.8
Q ss_pred CCCcHHHHHHHHHHh-CC--CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHH
Q 043110 57 EAPTKVQAQAIPVIL-SG--RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL 133 (316)
Q Consensus 57 ~~p~~~Q~~~i~~il-~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 133 (316)
..++|+|..++..+. +| +..+|..|-|+|||++-+-++.. + ...+|++|.+---+.|+..+++.|
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t-i-----------kK~clvLcts~VSVeQWkqQfk~w 368 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT-I-----------KKSCLVLCTSAVSVEQWKQQFKQW 368 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee-e-----------cccEEEEecCccCHHHHHHHHHhh
Confidence 356899999998887 44 47899999999999975433221 1 123999999999999999999988
Q ss_pred HhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCC-------ccccCceeEEEEecchhhhcCCcHHH
Q 043110 134 LHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTS-------SFLHTNLRWIIFDEADRILELGFGKE 206 (316)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~-------~~~~~~l~~lViDEad~l~~~~~~~~ 206 (316)
..--+...+....... .....++.|+|+|..++..--++.. .+.-.+..++++||+|.+-..-|+.-
T Consensus 369 sti~d~~i~rFTsd~K------e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRV 442 (776)
T KOG1123|consen 369 STIQDDQICRFTSDAK------ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRV 442 (776)
T ss_pred cccCccceEEeecccc------ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHH
Confidence 7543333333222111 2234568899999876643221110 01114678999999999876545544
Q ss_pred HHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHH
Q 043110 207 IEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLT 250 (316)
Q Consensus 207 i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~ 250 (316)
+..+-... .++++||+-.+-.++.
T Consensus 443 lsiv~aHc--------------------KLGLTATLvREDdKI~ 466 (776)
T KOG1123|consen 443 LSIVQAHC--------------------KLGLTATLVREDDKIT 466 (776)
T ss_pred HHHHHHHh--------------------hccceeEEeecccccc
Confidence 44443332 3688999876655443
No 136
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.66 E-value=8.6e-07 Score=84.57 Aligned_cols=149 Identities=19% Similarity=0.184 Sum_probs=88.3
Q ss_pred HHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHH-HHHhhcCCcee
Q 043110 64 AQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQ-KLLHRFRWIVP 142 (316)
Q Consensus 64 ~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~-~~~~~~~~~~~ 142 (316)
.+.+..+-+.+-+++.|+||||||.- +-+.+.+... ....++-+.-|.|--|..++++.. +++..++ ..+
T Consensus 57 ~~il~~ve~nqvlIviGeTGsGKSTQ----ipQyL~eaG~----~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG-~~V 127 (674)
T KOG0922|consen 57 DQILYAVEDNQVLIVIGETGSGKSTQ----IPQYLAEAGF----ASSGKIACTQPRRVAAVSLAKRVAEEMGCQLG-EEV 127 (674)
T ss_pred HHHHHHHHHCCEEEEEcCCCCCcccc----HhHHHHhccc----ccCCcEEeecCchHHHHHHHHHHHHHhCCCcC-cee
Confidence 45556666778899999999999975 3334433211 112226677799887777665443 3332222 222
Q ss_pred EEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhccCccccc
Q 043110 143 GYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASI 222 (316)
Q Consensus 143 ~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~ 222 (316)
++.+.=.+. -.....|...|-|.|+.-+.. .-.++..+++|+||||.=.= .-+.+-.+++.+-+.
T Consensus 128 GY~IRFed~------ts~~TrikymTDG~LLRE~l~--Dp~LskYsvIIlDEAHERsl--~TDiLlGlLKki~~~----- 192 (674)
T KOG0922|consen 128 GYTIRFEDS------TSKDTRIKYMTDGMLLREILK--DPLLSKYSVIILDEAHERSL--HTDILLGLLKKILKK----- 192 (674)
T ss_pred eeEEEeccc------CCCceeEEEecchHHHHHHhc--CCccccccEEEEechhhhhh--HHHHHHHHHHHHHhc-----
Confidence 222211111 012357999999999987764 33557899999999995110 123333344433321
Q ss_pred CCCCccccccceEEEEeeecc
Q 043110 223 GEGNEVSNVKRQNLLLSATLN 243 (316)
Q Consensus 223 ~~~~~~~~~~~q~i~~SAT~~ 243 (316)
.+.-++|++|||+.
T Consensus 193 -------R~~LklIimSATld 206 (674)
T KOG0922|consen 193 -------RPDLKLIIMSATLD 206 (674)
T ss_pred -------CCCceEEEEeeeec
Confidence 11568999999997
No 137
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.59 E-value=1.5e-06 Score=83.98 Aligned_cols=156 Identities=18% Similarity=0.235 Sum_probs=100.6
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHH
Q 043110 58 APTKVQAQAIPVIL----SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL 133 (316)
Q Consensus 58 ~p~~~Q~~~i~~il----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 133 (316)
.++++|.+.+.++. +|-+.|+.-..|-|||+-. ++++..+..... ..|| -||++|..-|. +++..+
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~----~~GP-fLVi~P~StL~----NW~~Ef 236 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRKG----IPGP-FLVIAPKSTLD----NWMNEF 236 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhcC----CCCC-eEEEeeHhhHH----HHHHHH
Confidence 58899999887765 6778999999999999874 344444443222 1233 79999998773 344444
Q ss_pred HhhcCCceeEEeeCCCChHHHH-HHHh--cCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHH
Q 043110 134 LHRFRWIVPGYVMGGGNRSKEK-ARLR--KGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 210 (316)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~-~~l~--~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i 210 (316)
....+.+.+.+.+|........ +.+. ...+|+|+|.+..+.-- ..+.--..+++||||||++-.. ...+..+
T Consensus 237 ~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk---~~lk~~~W~ylvIDEaHRiKN~--~s~L~~~ 311 (971)
T KOG0385|consen 237 KRFTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK---SFLKKFNWRYLVIDEAHRIKNE--KSKLSKI 311 (971)
T ss_pred HHhCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH---HHHhcCCceEEEechhhhhcch--hhHHHHH
Confidence 4455667777777765433222 2222 24789999998775421 1121125689999999998653 3445567
Q ss_pred HHHhccCcccccCCCCccccccceEEEEeeecch
Q 043110 211 LDILGSRNIASIGEGNEVSNVKRQNLLLSATLNE 244 (316)
Q Consensus 211 ~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~ 244 (316)
++.+.. ...++++.|.-.
T Consensus 312 lr~f~~----------------~nrLLlTGTPLQ 329 (971)
T KOG0385|consen 312 LREFKT----------------DNRLLLTGTPLQ 329 (971)
T ss_pred HHHhcc----------------cceeEeeCCccc
Confidence 777653 345677777543
No 138
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.50 E-value=6e-07 Score=77.16 Aligned_cols=73 Identities=29% Similarity=0.335 Sum_probs=50.2
Q ss_pred CcHHHHHHHHHHhCCCc-EEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHH
Q 043110 59 PTKVQAQAIPVILSGRD-VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQK 132 (316)
Q Consensus 59 p~~~Q~~~i~~il~g~d-~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 132 (316)
+++-|.+|+..++.... .++.||.|+|||.... .++..+...........+.++|+++|+..-+.++.+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 67899999999999998 9999999999996543 3444441100000123456699999999999999888877
No 139
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.47 E-value=3.2e-06 Score=86.91 Aligned_cols=139 Identities=19% Similarity=0.129 Sum_probs=91.7
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHH
Q 043110 74 RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSK 153 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (316)
+..+|.--||||||++-+..+ +.+... ...+.+++|+-.++|-.|+.+.+..+........ ...+...
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A-~~l~~~------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~-----~~~s~~~ 341 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLA-RLLLEL------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP-----KAESTSE 341 (962)
T ss_pred CceEEEeecCCchHHHHHHHH-HHHHhc------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc-----cccCHHH
Confidence 458999999999999854433 333332 2356799999999999999999999876532111 3344444
Q ss_pred HHHHHhcCC-cEEEeCcHHHHHHHhcCCcccc-CceeEEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccc
Q 043110 154 EKARLRKGI-SILVATPGHLLDHLKHTSSFLH-TNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNV 231 (316)
Q Consensus 154 ~~~~l~~~~-~IlV~Tp~~l~~~l~~~~~~~~-~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~ 231 (316)
-.+.+..+. .|+|+|-..|-........... .+=-.+|+||||+- .++..-..+...++
T Consensus 342 Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS---Q~G~~~~~~~~~~~---------------- 402 (962)
T COG0610 342 LKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS---QYGELAKLLKKALK---------------- 402 (962)
T ss_pred HHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc---cccHHHHHHHHHhc----------------
Confidence 445555443 7999999999887765311111 12237899999992 34444444455554
Q ss_pred cceEEEEeeecc
Q 043110 232 KRQNLLLSATLN 243 (316)
Q Consensus 232 ~~q~i~~SAT~~ 243 (316)
+...++||.|.-
T Consensus 403 ~a~~~gFTGTPi 414 (962)
T COG0610 403 KAIFIGFTGTPI 414 (962)
T ss_pred cceEEEeeCCcc
Confidence 567888888863
No 140
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.45 E-value=4.7e-06 Score=70.24 Aligned_cols=63 Identities=24% Similarity=0.333 Sum_probs=44.3
Q ss_pred CCcHHHHHHHHHHhCCC--cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHH
Q 043110 58 APTKVQAQAIPVILSGR--DVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEI 129 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g~--d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~ 129 (316)
++++-|.+++..++... -.++.++.|+|||.+. -.+...+.. .+.++++++||...+..+.+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~--------~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA--------AGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH--------TT--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh--------CCCeEEEECCcHHHHHHHHHh
Confidence 36889999999997544 3788899999999753 335555444 245699999999887665544
No 141
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.45 E-value=1.6e-06 Score=73.02 Aligned_cols=136 Identities=21% Similarity=0.218 Sum_probs=68.3
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHH-------HH
Q 043110 57 EAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVY-------EI 129 (316)
Q Consensus 57 ~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~-------~~ 129 (316)
...++-|..++.++++..-+++.||.|+|||+..+..+++.+... ..-+.+|+-|..+..+.+. +.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g-------~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG-------EYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT-------S-SEEEEEE-S--TT----SS-------
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC-------CCcEEEEEecCCCCccccccCCCCHHHH
Confidence 346889999999999777799999999999999998888888651 2334788878765422211 11
Q ss_pred HHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHH
Q 043110 130 LQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEE 209 (316)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~ 209 (316)
+..+...+.. ....+.+... ...+.....|-+..+..+ +. ..+. -.++|+|||+.+ -..++..
T Consensus 76 ~~p~~~p~~d-~l~~~~~~~~----~~~~~~~~~Ie~~~~~~i----RG---rt~~-~~~iIvDEaQN~----t~~~~k~ 138 (205)
T PF02562_consen 76 MEPYLRPIYD-ALEELFGKEK----LEELIQNGKIEIEPLAFI----RG---RTFD-NAFIIVDEAQNL----TPEELKM 138 (205)
T ss_dssp --TTTHHHHH-HHTTTS-TTC----HHHHHHTTSEEEEEGGGG----TT-----B--SEEEEE-SGGG------HHHHHH
T ss_pred HHHHHHHHHH-HHHHHhChHh----HHHHhhcCeEEEEehhhh----cC---cccc-ceEEEEecccCC----CHHHHHH
Confidence 1100000000 0000001111 111222334555554322 21 1222 279999999997 4577888
Q ss_pred HHHHhcc
Q 043110 210 ILDILGS 216 (316)
Q Consensus 210 i~~~l~~ 216 (316)
++.++..
T Consensus 139 ilTR~g~ 145 (205)
T PF02562_consen 139 ILTRIGE 145 (205)
T ss_dssp HHTTB-T
T ss_pred HHcccCC
Confidence 8888876
No 142
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=1e-06 Score=81.92 Aligned_cols=201 Identities=22% Similarity=0.203 Sum_probs=129.8
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCC-CCch--HHHHHHHHHHHhhhcCCCC----------------------CCCCCe
Q 043110 57 EAPTKVQAQAIPVILSGRDVLVNAAT-GTGK--TVAYLAPIINHLQSYSPRI----------------------DRSSGT 111 (316)
Q Consensus 57 ~~p~~~Q~~~i~~il~g~d~li~a~T-GsGK--T~~~~lp~l~~l~~~~~~~----------------------~~~~~~ 111 (316)
..+|+.|.+.+..+.+-+|++..-.| +.|+ +-.|++-+++++.+..... +.-..+
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 46799999999999999997654433 3444 4568888888885532110 011357
Q ss_pred eEEEEeCChHHHHHHHHHHHHHHhhcCCcee------------------------------EEeeCCCCh--------HH
Q 043110 112 FALVLVPTSELCLLVYEILQKLLHRFRWIVP------------------------------GYVMGGGNR--------SK 153 (316)
Q Consensus 112 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~--------~~ 153 (316)
++|||||+|+-|-.+.+.+..++.....-.. ..+.|.++. ..
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 8999999999999888888777432211000 001111110 00
Q ss_pred HHHHHh---cCCcEEEeCcHHHHHHHhcCC-----ccccCceeEEEEecchhhhcCCcHHHHHHHHHHhccCccccc---
Q 043110 154 EKARLR---KGISILVATPGHLLDHLKHTS-----SFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASI--- 222 (316)
Q Consensus 154 ~~~~l~---~~~~IlV~Tp~~l~~~l~~~~-----~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~--- 222 (316)
..-.|. ...||+||+|--|-..+.+.+ ...++.+.++|||.||.++.. -...+..|+..|........
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~Q-NwEhl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQ-NWEHLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHh-hHHHHHHHHHHhhcCcccccCCC
Confidence 111111 236999999998888776432 225688999999999998875 44667777777764322211
Q ss_pred ----CCC--CccccccceEEEEeeecchhHHHHHHHhcCCCE
Q 043110 223 ----GEG--NEVSNVKRQNLLLSATLNEKVNHLTKISLETPV 258 (316)
Q Consensus 223 ----~~~--~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~ 258 (316)
..| +.++.--+|+++||+-..+....+...+++|-.
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~ 495 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMA 495 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhc
Confidence 122 234555689999999999888888887776554
No 143
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.42 E-value=1.8e-06 Score=83.65 Aligned_cols=168 Identities=18% Similarity=0.274 Sum_probs=107.4
Q ss_pred CCCCCcHHHHHHHHHHh----CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHH
Q 043110 55 GFEAPTKVQAQAIPVIL----SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEIL 130 (316)
Q Consensus 55 g~~~p~~~Q~~~i~~il----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~ 130 (316)
|+. +-++|.-.+.++. .+-+.|+.-..|-|||.-. ++.+..+.+... +|+ -|||||..-| .+++
T Consensus 397 ~i~-LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~g~-----~gp-HLVVvPsSTl----eNWl 464 (941)
T KOG0389|consen 397 GIQ-LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQIGN-----PGP-HLVVVPSSTL----ENWL 464 (941)
T ss_pred CCc-ccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHcCC-----CCC-cEEEecchhH----HHHH
Confidence 444 6789988887765 4557899999999999653 445555554322 222 7999999776 5677
Q ss_pred HHHHhhcCCceeEEeeCCCChHHHHHHHh-c---CCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHH
Q 043110 131 QKLLHRFRWIVPGYVMGGGNRSKEKARLR-K---GISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE 206 (316)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~---~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~ 206 (316)
+++..+++.+.+...+|......+.+... + ..+|+|+|.......-...+.+.-.++.++|+||+|.|-... ...
T Consensus 465 rEf~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeR 543 (941)
T KOG0389|consen 465 REFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SER 543 (941)
T ss_pred HHHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHH
Confidence 77777778788877777765555444332 2 478999998655421111112222468899999999887653 223
Q ss_pred HHHHHHHhccCcccccCCCCccccccceEEEEeeec-chhHHHHHHH
Q 043110 207 IEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATL-NEKVNHLTKI 252 (316)
Q Consensus 207 i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~-~~~v~~~~~~ 252 (316)
+..++..- ..+.++++.|. -.++.+++.+
T Consensus 544 y~~LM~I~-----------------An~RlLLTGTPLQNNL~ELiSL 573 (941)
T KOG0389|consen 544 YKHLMSIN-----------------ANFRLLLTGTPLQNNLKELISL 573 (941)
T ss_pred HHHhcccc-----------------ccceEEeeCCcccccHHHHHHH
Confidence 33333221 34567777775 4556777664
No 144
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.40 E-value=1.6e-06 Score=86.91 Aligned_cols=128 Identities=22% Similarity=0.275 Sum_probs=91.7
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhc
Q 043110 58 APTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRF 137 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 137 (316)
.|+++|.-.--.+..|+ |+.+.||-|||+++.+|+.-.... |..|-||+..-.||.-=.+++..+....
T Consensus 138 ~~ydVQLiGgivLh~G~--IAEM~TGEGKTLvatlp~yLnAL~---------G~gVHvVTvNDYLA~RDaewm~p~y~fl 206 (1025)
T PRK12900 138 VPYDVQLIGGIVLHSGK--ISEMATGEGKTLVSTLPTFLNALT---------GRGVHVVTVNDYLAQRDKEWMNPVFEFH 206 (1025)
T ss_pred cccchHHhhhHHhhcCC--ccccCCCCCcchHhHHHHHHHHHc---------CCCcEEEeechHhhhhhHHHHHHHHHHh
Confidence 47888866555555554 899999999999999999766665 3338889999999999899999998876
Q ss_pred CCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHH-HHHHhcC-----CccccCceeEEEEecchhhh
Q 043110 138 RWIVPGYVMGGGNRSKEKARLRKGISILVATPGHL-LDHLKHT-----SSFLHTNLRWIIFDEADRIL 199 (316)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~~-----~~~~~~~l~~lViDEad~l~ 199 (316)
+ +.++++..+.+.. +.+.. -.+||..||..-| +++|+.. .......+.+.||||+|.++
T Consensus 207 G-LtVg~i~~~~~~~-~Rr~a-Y~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 207 G-LSVGVILNTMRPE-ERREQ-YLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred C-CeeeeeCCCCCHH-HHHHh-CCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 6 5666665544443 33333 3579999999754 3444321 11233567899999999865
No 145
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=3.7e-06 Score=81.71 Aligned_cols=192 Identities=23% Similarity=0.264 Sum_probs=102.4
Q ss_pred CCCCcHHHHH------------HHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCC-CCCCeeEEEEeCChHH
Q 043110 56 FEAPTKVQAQ------------AIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRID-RSSGTFALVLVPTSEL 122 (316)
Q Consensus 56 ~~~p~~~Q~~------------~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~-~~~~~~~lil~Pt~~L 122 (316)
.++|..+|.. .+.+|..+--+|++|.||||||.- +| +.+..-.-... ...+..+=|--|.|--
T Consensus 242 V~R~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQ--vP--QFLYEAGf~s~~~~~~gmIGITqPRRVA 317 (1172)
T KOG0926|consen 242 VSRPAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQ--VP--QFLYEAGFASEQSSSPGMIGITQPRRVA 317 (1172)
T ss_pred ecCcHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCcccc--ch--HHHHHcccCCccCCCCCeeeecCchHHH
Confidence 3566777743 233444445589999999999975 23 33322111111 1112234456688877
Q ss_pred HHHHHHHHHHHHhhcCCceeEEe--eCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhc
Q 043110 123 CLLVYEILQKLLHRFRWIVPGYV--MGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILE 200 (316)
Q Consensus 123 ~~Q~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~ 200 (316)
|..++++...-+..++..+ ++. +.|+- .....|...|-|.|+.-+. ..+.+...+.+|+||||.=.-
T Consensus 318 aiamAkRVa~EL~~~~~eV-sYqIRfd~ti--------~e~T~IkFMTDGVLLrEi~--~DflL~kYSvIIlDEAHERSv 386 (1172)
T KOG0926|consen 318 AIAMAKRVAFELGVLGSEV-SYQIRFDGTI--------GEDTSIKFMTDGVLLREIE--NDFLLTKYSVIILDEAHERSV 386 (1172)
T ss_pred HHHHHHHHHHHhccCccce-eEEEEecccc--------CCCceeEEecchHHHHHHH--HhHhhhhceeEEechhhhccc
Confidence 7666654333222222222 222 12211 2345799999999998877 467778899999999996221
Q ss_pred CCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHH---HHhcCCCEEEEcCCCCCC
Q 043110 201 LGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLT---KISLETPVLIGLDEKKFP 268 (316)
Q Consensus 201 ~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~---~~~l~~p~~i~~~~~~~~ 268 (316)
+-+.+-.++.++-... ........-.....+|+||||+- |.+|. ++|-.-|=.|.++.-.++
T Consensus 387 --nTDILiGmLSRiV~LR--~k~~ke~~~~kpLKLIIMSATLR--VsDFtenk~LFpi~pPlikVdARQfP 451 (1172)
T KOG0926|consen 387 --NTDILIGMLSRIVPLR--QKYYKEQCQIKPLKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDARQFP 451 (1172)
T ss_pred --hHHHHHHHHHHHHHHH--HHHhhhhcccCceeEEEEeeeEE--ecccccCceecCCCCceeeeecccCc
Confidence 2333333333332100 00000011223567899999985 44444 234333336666655433
No 146
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.33 E-value=8.7e-06 Score=75.92 Aligned_cols=149 Identities=17% Similarity=0.173 Sum_probs=98.7
Q ss_pred CCeeEEEEeCChHHHHHHHHHHHHHHhhcCCce----eEEeeC--------------CCChHHHHHHHhc----------
Q 043110 109 SGTFALVLVPTSELCLLVYEILQKLLHRFRWIV----PGYVMG--------------GGNRSKEKARLRK---------- 160 (316)
Q Consensus 109 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~----~~~~~~--------------~~~~~~~~~~l~~---------- 160 (316)
..|++|||+|+|..|.++.+.+..++....... ..--+| ......+...+..
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 468899999999999999888877764310000 000000 0111122222222
Q ss_pred ---------------CCcEEEeCcHHHHHHHhc-----CCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhccCccc
Q 043110 161 ---------------GISILVATPGHLLDHLKH-----TSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIA 220 (316)
Q Consensus 161 ---------------~~~IlV~Tp~~l~~~l~~-----~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~ 220 (316)
++||||++|=-|...+.. .....++++.++|+|.||.|+.. -.+.+..+++.+......
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQ-NW~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQ-NWEHVLHVFEHLNLQPKK 194 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHh-hHHHHHHHHHHhccCCCC
Confidence 278999999998887764 12347899999999999998765 457777777777653222
Q ss_pred ccCC-------C--CccccccceEEEEeeecchhHHHHHHHhcCCCE
Q 043110 221 SIGE-------G--NEVSNVKRQNLLLSATLNEKVNHLTKISLETPV 258 (316)
Q Consensus 221 ~~~~-------~--~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~ 258 (316)
..+. | +..+..-+|+|++|+...+++..+.+..+.|..
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~ 241 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYA 241 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCcc
Confidence 2111 1 233556689999999999999999998777664
No 147
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.32 E-value=6.4e-06 Score=79.99 Aligned_cols=162 Identities=17% Similarity=0.195 Sum_probs=96.4
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEcCCCCchHHHHH--HHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHH
Q 043110 58 APTKVQAQAIPVIL----SGRDVLVNAATGTGKTVAYL--APIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQ 131 (316)
Q Consensus 58 ~p~~~Q~~~i~~il----~g~d~li~a~TGsGKT~~~~--lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~ 131 (316)
.+.++|+.++..+. ++.-.|+--..|-|||.-.+ ++.+++-. .. ...+|||||. .+..|+.+.+.
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~---k~-----~~paLIVCP~-Tii~qW~~E~~ 275 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSG---KL-----TKPALIVCPA-TIIHQWMKEFQ 275 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcc---cc-----cCceEEEccH-HHHHHHHHHHH
Confidence 45889999988876 45568999999999997532 22232221 11 1239999997 56778877777
Q ss_pred HHHhhcCCceeEEeeCCCCh--------HHHHHH-----HhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhh
Q 043110 132 KLLHRFRWIVPGYVMGGGNR--------SKEKAR-----LRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRI 198 (316)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~-----l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l 198 (316)
.+.. ...+..+++..+. ...+.. ...+.+|+|+|.+.+.-.- ..+.--...++|+||.|++
T Consensus 276 ~w~p---~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~---d~l~~~~W~y~ILDEGH~I 349 (923)
T KOG0387|consen 276 TWWP---PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQG---DDLLGILWDYVILDEGHRI 349 (923)
T ss_pred HhCc---ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccC---cccccccccEEEecCcccc
Confidence 7653 3455555544331 111111 1123579999977654321 1222235689999999998
Q ss_pred hcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeec-chhHHHHHHH
Q 043110 199 LELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATL-NEKVNHLTKI 252 (316)
Q Consensus 199 ~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~-~~~v~~~~~~ 252 (316)
-.. ..++......++ ..+.|++|.|. -.++.+|-.+
T Consensus 350 rNp--ns~islackki~----------------T~~RiILSGTPiQNnL~ELwsL 386 (923)
T KOG0387|consen 350 RNP--NSKISLACKKIR----------------TVHRIILSGTPIQNNLTELWSL 386 (923)
T ss_pred cCC--ccHHHHHHHhcc----------------ccceEEeeCccccchHHHHHHH
Confidence 653 234444444554 34567777775 3445554433
No 148
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.31 E-value=1.8e-06 Score=82.66 Aligned_cols=141 Identities=18% Similarity=0.224 Sum_probs=85.7
Q ss_pred CCcHHHHHHHHHHhC-----CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCC-CeeEEEEeCChHHHHHHHHHHH
Q 043110 58 APTKVQAQAIPVILS-----GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSS-GTFALVLVPTSELCLLVYEILQ 131 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~-----g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~-~~~~lil~Pt~~L~~Q~~~~~~ 131 (316)
++.|+|..++.++.- +.-.|+....|-|||+..+-.++..-.....+.+++. ....|||||- .|..|++..+.
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~qW~~Ev~ 403 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SLIHQWEAEVA 403 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHHHHHHHHH
Confidence 457899999988762 2347889999999999754444443322222211111 1159999996 67889998887
Q ss_pred HHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHH----HHhcCC-ccccC--ceeEEEEecchhhhcC
Q 043110 132 KLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLD----HLKHTS-SFLHT--NLRWIIFDEADRILEL 201 (316)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~----~l~~~~-~~~~~--~l~~lViDEad~l~~~ 201 (316)
...... ...++++.|.+..+........+||||+|..-+.. -....+ ...+. ....+|+||||.+-+.
T Consensus 404 ~rl~~n--~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~ 478 (901)
T KOG4439|consen 404 RRLEQN--ALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNS 478 (901)
T ss_pred HHHhhc--ceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhccc
Confidence 776542 33345555555433333444568999999865544 010101 11111 2357999999988664
No 149
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.30 E-value=2.3e-06 Score=86.04 Aligned_cols=129 Identities=20% Similarity=0.227 Sum_probs=89.9
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhc
Q 043110 58 APTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRF 137 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 137 (316)
.|+++|...=-.+..| -++.+.||-|||++..+|+.-.... |..|-||+..-.||.-=.+++..+...+
T Consensus 169 ~~yDVQliGgivLh~G--~IAEM~TGEGKTLvAtlp~yLnAL~---------GkgVHvVTVNDYLA~RDaewmgply~fL 237 (1112)
T PRK12901 169 VHYDVQLIGGVVLHQG--KIAEMATGEGKTLVATLPVYLNALT---------GNGVHVVTVNDYLAKRDSEWMGPLYEFH 237 (1112)
T ss_pred cccchHHhhhhhhcCC--ceeeecCCCCchhHHHHHHHHHHHc---------CCCcEEEEechhhhhccHHHHHHHHHHh
Confidence 4677775554444444 5899999999999999998776665 3338889999999998888999888876
Q ss_pred CCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHH-HHHHhcC-----CccccCceeEEEEecchhhh
Q 043110 138 RWIVPGYVMGGGNRSKEKARLRKGISILVATPGHL-LDHLKHT-----SSFLHTNLRWIIFDEADRIL 199 (316)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~~-----~~~~~~~l~~lViDEad~l~ 199 (316)
+ +.++++........+.+..+ .+||..+|..-| +++|+.. .......+.|.||||+|.++
T Consensus 238 G-Lsvg~i~~~~~~~~~rr~aY-~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 238 G-LSVDCIDKHQPNSEARRKAY-NADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred C-CceeecCCCCCCHHHHHHhC-CCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 6 55555544233333444433 579999999755 3444321 11233567899999999876
No 150
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.29 E-value=2.1e-05 Score=77.55 Aligned_cols=183 Identities=18% Similarity=0.172 Sum_probs=113.4
Q ss_pred CCcHHHHHHHHHHh---CCC-------cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHH
Q 043110 58 APTKVQAQAIPVIL---SGR-------DVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVY 127 (316)
Q Consensus 58 ~p~~~Q~~~i~~il---~g~-------d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~ 127 (316)
.++|+|++.+.-+. .|. -+|+.-..|+|||+.. ++.++.+.++.+..++ .-.++|||+|. .|+.-++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~-IsflwtlLrq~P~~~~-~~~k~lVV~P~-sLv~nWk 314 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQC-ISFIWTLLRQFPQAKP-LINKPLVVAPS-SLVNNWK 314 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHH-HHHHHHHHHhCcCccc-cccccEEEccH-HHHHHHH
Confidence 46899999987765 232 2788888999999976 5566666665443111 12469999997 7788888
Q ss_pred HHHHHHHhhcCCceeEEeeCCCCh--HHHHHHHhc-----CCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhc
Q 043110 128 EILQKLLHRFRWIVPGYVMGGGNR--SKEKARLRK-----GISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILE 200 (316)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~-----~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~ 200 (316)
+.+.+|... ..+....++++... ......+.- ..-|++.+.+.+.+++.. +....+++||+||.|++-.
T Consensus 315 kEF~KWl~~-~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~---il~~~~glLVcDEGHrlkN 390 (776)
T KOG0390|consen 315 KEFGKWLGN-HRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK---ILLIRPGLLVCDEGHRLKN 390 (776)
T ss_pred HHHHHhccc-cccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH---HhcCCCCeEEECCCCCccc
Confidence 888887653 22444444444442 111111111 135778888887765543 3335789999999999754
Q ss_pred CCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecc-hhHHHHHH-HhcCCCEEEEcCCC
Q 043110 201 LGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLN-EKVNHLTK-ISLETPVLIGLDEK 265 (316)
Q Consensus 201 ~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~-~~v~~~~~-~~l~~p~~i~~~~~ 265 (316)
. ...+...+..+. -.+.|++|.|+= .++.++.. ..+.+|-.++...+
T Consensus 391 ~--~s~~~kaL~~l~----------------t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~s 439 (776)
T KOG0390|consen 391 S--DSLTLKALSSLK----------------TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISS 439 (776)
T ss_pred h--hhHHHHHHHhcC----------------CCceEEeeCCcccccHHHHHHHHhhcChhhccchHH
Confidence 2 223333344443 456788899974 45666554 45668877765443
No 151
>COG4889 Predicted helicase [General function prediction only]
Probab=98.26 E-value=5.7e-06 Score=81.19 Aligned_cols=149 Identities=22% Similarity=0.161 Sum_probs=87.2
Q ss_pred CcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCC----cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCe
Q 043110 36 CFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGR----DVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 111 (316)
Q Consensus 36 ~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~----d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~ 111 (316)
.|+.+.- .++...+ --..-.+|+|+|+.|+....+|- ..=+.+.-|+|||+..+ -+.+.+.. .
T Consensus 141 DW~~f~p-~e~~~nl-~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEala~----------~ 207 (1518)
T COG4889 141 DWDIFDP-TELQDNL-PLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEALAA----------A 207 (1518)
T ss_pred ChhhcCc-ccccccc-ccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHHhh----------h
Confidence 4444432 3334444 22345679999999999988652 13344556999999864 34444433 4
Q ss_pred eEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCC--------------------ChH---HHHH--HHhcCCcEEE
Q 043110 112 FALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGG--------------------NRS---KEKA--RLRKGISILV 166 (316)
Q Consensus 112 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~---~~~~--~l~~~~~IlV 166 (316)
++|+|+|+.+|..|..+....-.. ..+....++... +.. ..+. .-..+--|+.
T Consensus 208 ~iL~LvPSIsLLsQTlrew~~~~~--l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvF 285 (1518)
T COG4889 208 RILFLVPSISLLSQTLREWTAQKE--LDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVF 285 (1518)
T ss_pred heEeecchHHHHHHHHHHHhhccC--ccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEE
Confidence 499999999999887765543221 112222222111 011 1111 1122345889
Q ss_pred eCcHHHHHHHhcCCccccCceeEEEEecchhhhc
Q 043110 167 ATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILE 200 (316)
Q Consensus 167 ~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~ 200 (316)
+|...+...-.. ....+..++++|.||||+-..
T Consensus 286 sTYQSl~~i~eA-Qe~G~~~fDliicDEAHRTtG 318 (1518)
T COG4889 286 STYQSLPRIKEA-QEAGLDEFDLIICDEAHRTTG 318 (1518)
T ss_pred EcccchHHHHHH-HHcCCCCccEEEecchhcccc
Confidence 998877654332 333456899999999998654
No 152
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.22 E-value=2.5e-05 Score=74.87 Aligned_cols=167 Identities=19% Similarity=0.157 Sum_probs=91.8
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHH-HHhh
Q 043110 58 APTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQK-LLHR 136 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~-~~~~ 136 (316)
.-..++.+.+..+-.++-+++.+.||||||.- +.+.+.... .. .+| .+-+--|.|.-|..+++.+.. +...
T Consensus 356 Pvf~~R~~ll~~ir~n~vvvivgETGSGKTTQ----l~QyL~edG-Y~--~~G-mIGcTQPRRvAAiSVAkrVa~EM~~~ 427 (1042)
T KOG0924|consen 356 PVFACRDQLLSVIRENQVVVIVGETGSGKTTQ----LAQYLYEDG-YA--DNG-MIGCTQPRRVAAISVAKRVAEEMGVT 427 (1042)
T ss_pred chHHHHHHHHHHHhhCcEEEEEecCCCCchhh----hHHHHHhcc-cc--cCC-eeeecCchHHHHHHHHHHHHHHhCCc
Confidence 34567777777777788899999999999986 334443311 10 111 233445888888777765433 3222
Q ss_pred cCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhcc
Q 043110 137 FRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216 (316)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~ 216 (316)
++ ..+++.+.=.+.- .....|=..|-|.|+.-.- ..-.+...+.+|+||||.=.- -.+.+-.+++....
T Consensus 428 lG-~~VGYsIRFEdvT------~~~T~IkymTDGiLLrEsL--~d~~L~kYSviImDEAHERsl--NtDilfGllk~~la 496 (1042)
T KOG0924|consen 428 LG-DTVGYSIRFEDVT------SEDTKIKYMTDGILLRESL--KDRDLDKYSVIIMDEAHERSL--NTDILFGLLKKVLA 496 (1042)
T ss_pred cc-cccceEEEeeecC------CCceeEEEeccchHHHHHh--hhhhhhheeEEEechhhhccc--chHHHHHHHHHHHH
Confidence 12 1122211100000 1234588999998876433 223455788999999996221 11222223322221
Q ss_pred CcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCC
Q 043110 217 RNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETP 257 (316)
Q Consensus 217 ~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p 257 (316)
. .....+|..||||.. ++|..-|-.-|
T Consensus 497 r------------RrdlKliVtSATm~a--~kf~nfFgn~p 523 (1042)
T KOG0924|consen 497 R------------RRDLKLIVTSATMDA--QKFSNFFGNCP 523 (1042)
T ss_pred h------------hccceEEEeeccccH--HHHHHHhCCCc
Confidence 0 116789999999973 55555444333
No 153
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.22 E-value=1.9e-05 Score=77.80 Aligned_cols=155 Identities=16% Similarity=0.152 Sum_probs=96.1
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHH
Q 043110 75 DVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKE 154 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (316)
-.++.||.|||||.+..-++-+.+.. .+.++|+|+-.++|+.++...++...- ...+...-.++....
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~~--------~~~~VLvVShRrSL~~sL~~rf~~~~l--~gFv~Y~d~~~~~i~-- 118 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALKN--------PDKSVLVVSHRRSLTKSLAERFKKAGL--SGFVNYLDSDDYIID-- 118 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhccC--------CCCeEEEEEhHHHHHHHHHHHHhhcCC--Ccceeeecccccccc--
Confidence 37999999999998864444333322 345599999999999999888875421 111111111111000
Q ss_pred HHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHH-------HHHHHhccCcccccCCCCc
Q 043110 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIE-------EILDILGSRNIASIGEGNE 227 (316)
Q Consensus 155 ~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~-------~i~~~l~~~~~~~~~~~~~ 227 (316)
....+-+++..+.|.... ...+.+.++|||||+...+..-|.+.++ .+...+..
T Consensus 119 ----~~~~~rLivqIdSL~R~~----~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~----------- 179 (824)
T PF02399_consen 119 ----GRPYDRLIVQIDSLHRLD----GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRN----------- 179 (824)
T ss_pred ----ccccCeEEEEehhhhhcc----cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHh-----------
Confidence 012456667766665433 2234568999999999888764433322 23333333
Q ss_pred cccccceEEEEeeecchhHHHHHHHhc-CCCEEEEcCC
Q 043110 228 VSNVKRQNLLLSATLNEKVNHLTKISL-ETPVLIGLDE 264 (316)
Q Consensus 228 ~~~~~~q~i~~SAT~~~~v~~~~~~~l-~~p~~i~~~~ 264 (316)
...+|++-|++.+...++..... ..++.+.+.+
T Consensus 180 ----ak~VI~~DA~ln~~tvdFl~~~Rp~~~i~vI~n~ 213 (824)
T PF02399_consen 180 ----AKTVIVMDADLNDQTVDFLASCRPDENIHVIVNT 213 (824)
T ss_pred ----CCeEEEecCCCCHHHHHHHHHhCCCCcEEEEEee
Confidence 56899999999999999888754 3555555444
No 154
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.14 E-value=7.8e-05 Score=69.06 Aligned_cols=179 Identities=17% Similarity=0.123 Sum_probs=94.1
Q ss_pred cCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeE
Q 043110 34 SCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 113 (316)
Q Consensus 34 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 113 (316)
.+.|...+.++.-.+.|+++-... -...+.+-+..+.+++-+++.+.||||||.-.--.++....... ..+
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LP-vw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~--------~~v 94 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELP-VWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL--------TGV 94 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCc-hHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc--------cce
Confidence 678999999999999996653322 22333444566667788999999999999752111222222211 115
Q ss_pred EEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEe
Q 043110 114 LVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFD 193 (316)
Q Consensus 114 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViD 193 (316)
..--|.|--|.+++.+...-..-.-..-+++.+.-.+...... -.-.+|-++|+.-.-+ .-.+.....+|+|
T Consensus 95 ~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T------~Lky~tDgmLlrEams--~p~l~~y~viiLD 166 (699)
T KOG0925|consen 95 ACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNT------LLKYCTDGMLLREAMS--DPLLGRYGVIILD 166 (699)
T ss_pred eecCchHHHHHHHHHHHHHHhccccchhccccccccccCChhH------HHHHhcchHHHHHHhh--CcccccccEEEec
Confidence 5556888777776654432211000001111110001000000 0124555655543332 2345678999999
Q ss_pred cchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecc
Q 043110 194 EADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLN 243 (316)
Q Consensus 194 Ead~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~ 243 (316)
|||.=.= -.+.+..+++.... ..+...+|.+|||+-
T Consensus 167 eahERtl--ATDiLmGllk~v~~------------~rpdLk~vvmSatl~ 202 (699)
T KOG0925|consen 167 EAHERTL--ATDILMGLLKEVVR------------NRPDLKLVVMSATLD 202 (699)
T ss_pred hhhhhhH--HHHHHHHHHHHHHh------------hCCCceEEEeecccc
Confidence 9995211 11223333333222 112789999999986
No 155
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.12 E-value=5e-05 Score=72.69 Aligned_cols=168 Identities=17% Similarity=0.165 Sum_probs=95.3
Q ss_pred cHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHH-HHHHHhhcC
Q 043110 60 TKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEI-LQKLLHRFR 138 (316)
Q Consensus 60 ~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~-~~~~~~~~~ 138 (316)
+++-.+.+.++...+-++|.|.||||||.- +| +.|....- ...|.++=+--|.|--|..++.+ .+.++-.++
T Consensus 267 y~ykdell~av~e~QVLiI~GeTGSGKTTQ--iP--QyL~EaGy---tk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG 339 (902)
T KOG0923|consen 267 YPYKDELLKAVKEHQVLIIVGETGSGKTTQ--IP--QYLYEAGY---TKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLG 339 (902)
T ss_pred hhhHHHHHHHHHhCcEEEEEcCCCCCcccc--cc--HHHHhccc---ccCCceEeecCcchHHHHHHHHHHHHHhCcccc
Confidence 455566777888888999999999999976 33 33332111 11233455666888888777654 444443332
Q ss_pred CceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhccCc
Q 043110 139 WIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRN 218 (316)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~ 218 (316)
..+ ++.+.=.+.- ....-|=+.|-|+|+.-+. ....+...+.+||||||.=.- .-+.+-.++..+.+
T Consensus 340 ~eV-GYsIRFEdcT------SekTvlKYMTDGmLlREfL--~epdLasYSViiiDEAHERTL--~TDILfgLvKDIar-- 406 (902)
T KOG0923|consen 340 HEV-GYSIRFEDCT------SEKTVLKYMTDGMLLREFL--SEPDLASYSVIIVDEAHERTL--HTDILFGLVKDIAR-- 406 (902)
T ss_pred ccc-ceEEEecccc------CcceeeeeecchhHHHHHh--ccccccceeEEEeehhhhhhh--hhhHHHHHHHHHHh--
Confidence 111 1111100100 1123477999999988665 345667899999999995211 11222222222221
Q ss_pred ccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEE
Q 043110 219 IASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVL 259 (316)
Q Consensus 219 ~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~ 259 (316)
-.+...+++.|||+.. .+|..-|-.-|++
T Consensus 407 ----------~RpdLKllIsSAT~DA--ekFS~fFDdapIF 435 (902)
T KOG0923|consen 407 ----------FRPDLKLLISSATMDA--EKFSAFFDDAPIF 435 (902)
T ss_pred ----------hCCcceEEeeccccCH--HHHHHhccCCcEE
Confidence 1127789999999973 4444434344444
No 156
>PRK10536 hypothetical protein; Provisional
Probab=98.12 E-value=0.00016 Score=62.77 Aligned_cols=139 Identities=18% Similarity=0.153 Sum_probs=77.0
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHH-------H
Q 043110 54 LGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLL-------V 126 (316)
Q Consensus 54 ~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q-------~ 126 (316)
.++..-+..|...+..+.++..+++.|++|+|||+..+..+++.+... .--+++|.=|+.+..+. .
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~-------~~~kIiI~RP~v~~ge~LGfLPG~~ 127 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK-------DVDRIIVTRPVLQADEDLGFLPGDI 127 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC-------CeeEEEEeCCCCCchhhhCcCCCCH
Confidence 356667889999999888888899999999999998877676665431 12235555566542211 1
Q ss_pred HHHHHHHHhhcCCceeEEeeCCCChHHHHHHH-h-cCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcH
Q 043110 127 YEILQKLLHRFRWIVPGYVMGGGNRSKEKARL-R-KGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 204 (316)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~-~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~ 204 (316)
.+.+..+......... ...+. .....+ . ..-.|-|.. +.+++. ..+ +-.++|+|||+.+. .
T Consensus 128 ~eK~~p~~~pi~D~L~-~~~~~----~~~~~~~~~~~~~Iei~~----l~ymRG-rtl---~~~~vIvDEaqn~~----~ 190 (262)
T PRK10536 128 AEKFAPYFRPVYDVLV-RRLGA----SFMQYCLRPEIGKVEIAP----FAYMRG-RTF---ENAVVILDEAQNVT----A 190 (262)
T ss_pred HHHHHHHHHHHHHHHH-HHhCh----HHHHHHHHhccCcEEEec----HHHhcC-Ccc---cCCEEEEechhcCC----H
Confidence 2222222211100000 00111 111111 1 112344444 333443 122 23799999999873 3
Q ss_pred HHHHHHHHHhcc
Q 043110 205 KEIEEILDILGS 216 (316)
Q Consensus 205 ~~i~~i~~~l~~ 216 (316)
..+..++.+++.
T Consensus 191 ~~~k~~ltR~g~ 202 (262)
T PRK10536 191 AQMKMFLTRLGE 202 (262)
T ss_pred HHHHHHHhhcCC
Confidence 778888888876
No 157
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.10 E-value=4.7e-05 Score=77.25 Aligned_cols=170 Identities=15% Similarity=0.181 Sum_probs=104.9
Q ss_pred CcHHHHHHHHHHh--C--CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHH
Q 043110 59 PTKVQAQAIPVIL--S--GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL 134 (316)
Q Consensus 59 p~~~Q~~~i~~il--~--g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 134 (316)
++.+|++.+.++. + +-+.|++-..|-|||+-.+--+.................-.|||||. .|+--+...+.+++
T Consensus 976 LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf~ 1054 (1549)
T KOG0392|consen 976 LRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKFF 1054 (1549)
T ss_pred HHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHhc
Confidence 4779999887653 2 34789999999999997543333333332222222223338999997 67766666666655
Q ss_pred hhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHh
Q 043110 135 HRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214 (316)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l 214 (316)
+...+....|+...+...+.-.++.+|+|++.+.+..-+.. +.-.+..|+|+||-|.+-. -...+....+.+
T Consensus 1055 ---pfL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~---l~~~~wNYcVLDEGHVikN--~ktkl~kavkqL 1126 (1549)
T KOG0392|consen 1055 ---PFLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY---LIKIDWNYCVLDEGHVIKN--SKTKLTKAVKQL 1126 (1549)
T ss_pred ---chhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH---HHhcccceEEecCcceecc--hHHHHHHHHHHH
Confidence 33444444455555555555556679999998876532211 1113567999999998754 345555666666
Q ss_pred ccCcccccCCCCccccccceEEEEeeec-chhHHHHHHHh
Q 043110 215 GSRNIASIGEGNEVSNVKRQNLLLSATL-NEKVNHLTKIS 253 (316)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~q~i~~SAT~-~~~v~~~~~~~ 253 (316)
.. + ..+++|.|. -+++.++-.+|
T Consensus 1127 ~a---------------~-hRLILSGTPIQNnvleLWSLF 1150 (1549)
T KOG0392|consen 1127 RA---------------N-HRLILSGTPIQNNVLELWSLF 1150 (1549)
T ss_pred hh---------------c-ceEEeeCCCcccCHHHHHHHH
Confidence 53 3 445667775 45566655543
No 158
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.08 E-value=3.2e-05 Score=71.66 Aligned_cols=151 Identities=20% Similarity=0.232 Sum_probs=91.9
Q ss_pred CCCcHHHHHHHHHHh-CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHh
Q 043110 57 EAPTKVQAQAIPVIL-SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLH 135 (316)
Q Consensus 57 ~~p~~~Q~~~i~~il-~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 135 (316)
+.+.|+|.+.+...+ .|..+++.-..|-|||+-++- +.......-+ .||+||. .+-.-+.+.+..++.
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAla-IA~yyraEwp---------lliVcPA-svrftWa~al~r~lp 265 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALA-IARYYRAEWP---------LLIVCPA-SVRFTWAKALNRFLP 265 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHH-HHHHHhhcCc---------EEEEecH-HHhHHHHHHHHHhcc
Confidence 346789999887765 677899999999999997643 3333322111 8999997 444556666666654
Q ss_pred hcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhc
Q 043110 136 RFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 215 (316)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~ 215 (316)
.... ..++.++.+.... +-....|.|.+.+.+..+-. .....+.+.+|+||+|.|-+. -....+.++..+.
T Consensus 266 s~~p--i~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~---~l~~~~~~vvI~DEsH~Lk~s-ktkr~Ka~~dllk 336 (689)
T KOG1000|consen 266 SIHP--IFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHD---ILKKEKYRVVIFDESHMLKDS-KTKRTKAATDLLK 336 (689)
T ss_pred cccc--eEEEecccCCccc---cccCCeEEEEEHHHHHHHHH---HHhcccceEEEEechhhhhcc-chhhhhhhhhHHH
Confidence 3221 2233333332111 11124588888876654332 222345889999999988765 3333555555554
Q ss_pred cCcccccCCCCccccccceEEEEeeec
Q 043110 216 SRNIASIGEGNEVSNVKRQNLLLSATL 242 (316)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~q~i~~SAT~ 242 (316)
. -.++|++|.|.
T Consensus 337 ~---------------akhvILLSGTP 348 (689)
T KOG1000|consen 337 V---------------AKHVILLSGTP 348 (689)
T ss_pred H---------------hhheEEecCCc
Confidence 4 45677778774
No 159
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.08 E-value=0.00012 Score=62.36 Aligned_cols=155 Identities=19% Similarity=0.207 Sum_probs=96.3
Q ss_pred CCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhC---CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCe
Q 043110 35 CCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILS---GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 111 (316)
Q Consensus 35 ~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~---g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~ 111 (316)
.+|+-...+.+++=.+ + .++- .++.|.+....+.+ |+|.+.+.-+|.|||.+ ++|++..+..... .
T Consensus 3 ~~w~p~~~P~wLl~E~-e-~~il-iR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~-------~ 71 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEI-E-SNIL-IRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGS-------R 71 (229)
T ss_pred CCCCchhChHHHHHHH-H-cCce-eeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCC-------c
Confidence 5677777777777666 3 3665 79999999888774 67999999999999976 5778777665322 2
Q ss_pred eEEEEeCChHHHHHHHHHHHHHHhhcCCceeEE--eeCCCCh--H--HHH----HHHhcCCcEEEeCcHHHHHHHhc---
Q 043110 112 FALVLVPTSELCLLVYEILQKLLHRFRWIVPGY--VMGGGNR--S--KEK----ARLRKGISILVATPGHLLDHLKH--- 178 (316)
Q Consensus 112 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~--~~~~~~~--~--~~~----~~l~~~~~IlV~Tp~~l~~~l~~--- 178 (316)
.+.+++| ++|..|.++.++......-...+.. +...... . ... ......-.|+++||+.++.+.-.
T Consensus 72 LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le 150 (229)
T PF12340_consen 72 LVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLE 150 (229)
T ss_pred EEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHH
Confidence 3566666 4799999998887765432221111 1111111 1 111 12223447999999987654311
Q ss_pred ----CCc----------cccCceeEEEEecchhhhcC
Q 043110 179 ----TSS----------FLHTNLRWIIFDEADRILEL 201 (316)
Q Consensus 179 ----~~~----------~~~~~l~~lViDEad~l~~~ 201 (316)
... ..+.+-..=|+||+|..+..
T Consensus 151 ~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~~ 187 (229)
T PF12340_consen 151 RLQDGKPEEARELLKIQKWLDEHSRDILDESDEILSV 187 (229)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccCc
Confidence 010 01123344688999987764
No 160
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.06 E-value=0.00012 Score=71.84 Aligned_cols=148 Identities=21% Similarity=0.221 Sum_probs=82.7
Q ss_pred HHHHHHHHHcCCCC-CcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHH
Q 043110 45 TLCDQLRERLGFEA-PTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELC 123 (316)
Q Consensus 45 ~l~~~l~~~~g~~~-p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~ 123 (316)
.+.+.|...|+... ..++|+.|+-..+.++-.++.+++|+|||.... .++..+.... .....++++++||..-|
T Consensus 138 ~~~~~l~~lf~~~~~~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~-~ll~~l~~~~----~~~~~~i~l~APTgkAA 212 (615)
T PRK10875 138 LLRQTLDALFGPVTDEVDWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQLA----DGERCRIRLAAPTGKAA 212 (615)
T ss_pred HHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH-HHHHHHHHhc----CCCCcEEEEECCcHHHH
Confidence 34445533344331 358999999999998899999999999998742 2333332211 11235688999999888
Q ss_pred HHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCC-----ccccCceeEEEEecchhh
Q 043110 124 LLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTS-----SFLHTNLRWIIFDEADRI 198 (316)
Q Consensus 124 ~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~-----~~~~~~l~~lViDEad~l 198 (316)
..+.+.+......... . ... ......-..|-.+++....... ....-..+++|||||-++
T Consensus 213 ~rL~e~~~~~~~~~~~----------~-~~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv 277 (615)
T PRK10875 213 ARLTESLGKALRQLPL----------T-DEQ----KKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV 277 (615)
T ss_pred HHHHHHHHhhhhcccc----------c-hhh----hhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc
Confidence 7777666543322110 0 000 0000111222222222111100 011124689999999865
Q ss_pred hcCCcHHHHHHHHHHhcc
Q 043110 199 LELGFGKEIEEILDILGS 216 (316)
Q Consensus 199 ~~~~~~~~i~~i~~~l~~ 216 (316)
| ...+..+++.++.
T Consensus 278 -d---~~lm~~ll~al~~ 291 (615)
T PRK10875 278 -D---LPMMARLIDALPP 291 (615)
T ss_pred -c---HHHHHHHHHhccc
Confidence 3 3667778888876
No 161
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.05 E-value=3.1e-05 Score=71.37 Aligned_cols=108 Identities=27% Similarity=0.308 Sum_probs=64.8
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHH
Q 043110 75 DVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKE 154 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (316)
-++|.|..|||||+..+- ++..+.. ...+..++++++..+|...+.+.+..... .
T Consensus 3 v~~I~G~aGTGKTvla~~-l~~~l~~------~~~~~~~~~l~~n~~l~~~l~~~l~~~~~--~---------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALN-LAKELQN------SEEGKKVLYLCGNHPLRNKLREQLAKKYN--P---------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHH-HHHHhhc------cccCCceEEEEecchHHHHHHHHHhhhcc--c----------------
Confidence 378999999999998643 3333311 12355599999999999887776655320 0
Q ss_pred HHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCC-------cHHHHHHHHHH
Q 043110 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELG-------FGKEIEEILDI 213 (316)
Q Consensus 155 ~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~-------~~~~i~~i~~~ 213 (316)
......+..|..+...+.. ........+++|+||||+|.+.+ ....+..+++.
T Consensus 58 -----~~~~~~~~~~~~~i~~~~~-~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 -----KLKKSDFRKPTSFINNYSE-SDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred -----chhhhhhhhhHHHHhhccc-ccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 0011223333333332221 12233578899999999998832 23556666655
No 162
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.05 E-value=1.9e-05 Score=74.89 Aligned_cols=64 Identities=22% Similarity=0.305 Sum_probs=51.9
Q ss_pred CCcHHHHHHHHHHhCCCc-EEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHH
Q 043110 58 APTKVQAQAIPVILSGRD-VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEIL 130 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g~d-~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~ 130 (316)
.+.+-|++|+....+.++ .++.||+|+|||.+...-+.+.+.+ +.++|+.+||.+-+.-+.+++
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~---------~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ---------KKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc---------CCeEEEEcCchHHHHHHHHHh
Confidence 467899999999888876 7999999999999876655555544 455999999999988888754
No 163
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.99 E-value=0.00018 Score=70.33 Aligned_cols=134 Identities=21% Similarity=0.198 Sum_probs=76.7
Q ss_pred cHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCC
Q 043110 60 TKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRW 139 (316)
Q Consensus 60 ~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~ 139 (316)
.++|+.|+..++.++-+++.|+.|+|||... ..++..+....+. ....++++.+||..-+..+.+.+.........
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~~---~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~ 222 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSPK---QGKLRIALAAPTGKAAARLAESLRKAVKNLAA 222 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhccc---cCCCcEEEECCcHHHHHHHHHHHHhhhccccc
Confidence 4799999999999999999999999999864 2233333322111 01246999999988777766655443221110
Q ss_pred ceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCC-----ccccCceeEEEEecchhhhcCCcHHHHHHHHHHh
Q 043110 140 IVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTS-----SFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214 (316)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~-----~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l 214 (316)
. ... .....+-..|-.+++....... ......+++||||||-++ + ...+..+++.+
T Consensus 223 ----------~-~~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv-d---~~l~~~ll~al 283 (586)
T TIGR01447 223 ----------A-EAL----IAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV-D---LPLMAKLLKAL 283 (586)
T ss_pred ----------c-hhh----hhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC-C---HHHHHHHHHhc
Confidence 0 000 0001111233333332211100 011225789999999865 3 35677788887
Q ss_pred cc
Q 043110 215 GS 216 (316)
Q Consensus 215 ~~ 216 (316)
+.
T Consensus 284 ~~ 285 (586)
T TIGR01447 284 PP 285 (586)
T ss_pred CC
Confidence 75
No 164
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.98 E-value=6.6e-05 Score=66.30 Aligned_cols=162 Identities=17% Similarity=0.117 Sum_probs=102.2
Q ss_pred CcHHHHHHHHHHh----------CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHH
Q 043110 59 PTKVQAQAIPVIL----------SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYE 128 (316)
Q Consensus 59 p~~~Q~~~i~~il----------~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~ 128 (316)
++..|.+++-... .+.-+++--.||.||--...--+++...+. ..++|+++.+..|-....+
T Consensus 38 LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G--------r~r~vwvS~s~dL~~Da~R 109 (303)
T PF13872_consen 38 LSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG--------RKRAVWVSVSNDLKYDAER 109 (303)
T ss_pred ccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC--------CCceEEEECChhhhhHHHH
Confidence 5788888876554 233588888999998776555566666552 2349999999999999888
Q ss_pred HHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcC--Ccccc--------Cce-eEEEEecchh
Q 043110 129 ILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHT--SSFLH--------TNL-RWIIFDEADR 197 (316)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~--~~~~~--------~~l-~~lViDEad~ 197 (316)
.++.++... +.+..+.. .... . ...-.-.|+.+|...|...-... ....+ .+. .+||+||||.
T Consensus 110 Dl~DIG~~~--i~v~~l~~-~~~~-~--~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~ 183 (303)
T PF13872_consen 110 DLRDIGADN--IPVHPLNK-FKYG-D--IIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHK 183 (303)
T ss_pred HHHHhCCCc--ccceechh-hccC-c--CCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchh
Confidence 888877542 11111110 0000 0 01112368999988776654221 00000 112 3899999999
Q ss_pred hhcCCc--------HHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHH
Q 043110 198 ILELGF--------GKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLT 250 (316)
Q Consensus 198 l~~~~~--------~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~ 250 (316)
.-...- +..+..+.+.+| +.+++.+|||-..+..++.
T Consensus 184 akn~~~~~~~~sk~g~avl~LQ~~LP----------------~ARvvY~SATgasep~Nma 228 (303)
T PF13872_consen 184 AKNLSSGSKKPSKTGIAVLELQNRLP----------------NARVVYASATGASEPRNMA 228 (303)
T ss_pred cCCCCccCccccHHHHHHHHHHHhCC----------------CCcEEEecccccCCCceee
Confidence 765422 245556666676 5679999999988888774
No 165
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.97 E-value=5.5e-06 Score=82.62 Aligned_cols=143 Identities=20% Similarity=0.166 Sum_probs=93.3
Q ss_pred CCcHHHHHHHHHHh-CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhh
Q 043110 58 APTKVQAQAIPVIL-SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHR 136 (316)
Q Consensus 58 ~p~~~Q~~~i~~il-~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~ 136 (316)
...|+|.+.+-.+. ...++++-+|||+|||++|.+++...+.. .++.+++|++|..+|+..-.+...+....
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~-------~p~~kvvyIap~kalvker~~Dw~~r~~~ 999 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY-------YPGSKVVYIAPDKALVKERSDDWSKRDEL 999 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc-------CCCccEEEEcCCchhhcccccchhhhccc
Confidence 34556655443322 23568999999999999999988877655 34567999999999997766655554322
Q ss_pred cCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCC-ccccCceeEEEEecchhhhcCCcHHHHHHHHH
Q 043110 137 FRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTS-SFLHTNLRWIIFDEADRILELGFGKEIEEILD 212 (316)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~-~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~ 212 (316)
+.....-..|..... .. -...++++|+||++.....+++. .-.+.++..+|+||.|++-+ ++++-++.+..
T Consensus 1000 -~g~k~ie~tgd~~pd--~~-~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~-~rgPVle~ivs 1071 (1230)
T KOG0952|consen 1000 -PGIKVIELTGDVTPD--VK-AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVS 1071 (1230)
T ss_pred -CCceeEeccCccCCC--hh-heecCceEEcccccccCccccccchhhhccccceeecccccccC-CCcceEEEEee
Confidence 223333333333322 11 12346899999999988777543 23456899999999998654 45544444433
No 166
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.95 E-value=6.2e-05 Score=69.82 Aligned_cols=129 Identities=20% Similarity=0.279 Sum_probs=85.1
Q ss_pred CCcHHHHHHHHHHhCCC-----cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHH
Q 043110 58 APTKVQAQAIPVILSGR-----DVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQK 132 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g~-----d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 132 (316)
.+-|+|++.+-++.... -.++.-..|.|||.-.+..++..+. +...||++|+.+|. |+.+.+..
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~----------ra~tLVvaP~VAlm-QW~nEI~~ 252 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVD----------RAPTLVVAPTVALM-QWKNEIER 252 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccc----------cCCeeEEccHHHHH-HHHHHHHH
Confidence 35689999887765433 2577889999999876544444221 23399999999974 77777777
Q ss_pred HHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcC-Ccc-----------ccC--ceeEEEEecchhh
Q 043110 133 LLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHT-SSF-----------LHT--NLRWIIFDEADRI 198 (316)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~-~~~-----------~~~--~l~~lViDEad~l 198 (316)
... + ....+++.|.........+. ++|++++|...+..-.+.. .++ .+. ++--+|+||||.+
T Consensus 253 ~T~--g-slkv~~YhG~~R~~nikel~-~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~I 328 (791)
T KOG1002|consen 253 HTS--G-SLKVYIYHGAKRDKNIKELM-NYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNI 328 (791)
T ss_pred hcc--C-ceEEEEEecccccCCHHHhh-cCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhccc
Confidence 764 2 33445555554444444443 5899999999887766541 111 112 2346899999998
Q ss_pred hcC
Q 043110 199 LEL 201 (316)
Q Consensus 199 ~~~ 201 (316)
-+.
T Consensus 329 K~R 331 (791)
T KOG1002|consen 329 KDR 331 (791)
T ss_pred ccc
Confidence 764
No 167
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.92 E-value=5.8e-05 Score=74.16 Aligned_cols=146 Identities=20% Similarity=0.239 Sum_probs=80.7
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhc-----CCcee-EEeeCC
Q 043110 75 DVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRF-----RWIVP-GYVMGG 148 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~-----~~~~~-~~~~~~ 148 (316)
++=|.+.||+|||+||+=.|.+.-.. -.-.+.||+|||.+.-+-++...+.....+ ..... .+.+.
T Consensus 76 NiDI~METGTGKTy~YlrtmfeLhk~-------YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~- 147 (985)
T COG3587 76 NIDILMETGTGKTYTYLRTMFELHKK-------YGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYD- 147 (985)
T ss_pred eeeEEEecCCCceeeHHHHHHHHHHH-------hCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeec-
Confidence 68899999999999997766554332 124569999999998776555554444433 11111 22222
Q ss_pred CChHHHHHHHhcCCcEEEeCcHHHHHH------Hhc-----CCcc--------ccCce-eEEEEecchhhhcCCcHHHHH
Q 043110 149 GNRSKEKARLRKGISILVATPGHLLDH------LKH-----TSSF--------LHTNL-RWIIFDEADRILELGFGKEIE 208 (316)
Q Consensus 149 ~~~~~~~~~l~~~~~IlV~Tp~~l~~~------l~~-----~~~~--------~~~~l-~~lViDEad~l~~~~~~~~i~ 208 (316)
.......-.....+.+++.|-..+-.- +.. .... .+..+ -++|+||-|++... ...+.
T Consensus 148 ~~~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~--~k~~~ 225 (985)
T COG3587 148 EDIEKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD--DKTYG 225 (985)
T ss_pred hHHHHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc--hHHHH
Confidence 111111112223467777775543211 110 0100 01112 27999999998763 22233
Q ss_pred HHHHHhccCcccccCCCCccccccce-EEEEeeecchhHHH
Q 043110 209 EILDILGSRNIASIGEGNEVSNVKRQ-NLLLSATLNEKVNH 248 (316)
Q Consensus 209 ~i~~~l~~~~~~~~~~~~~~~~~~~q-~i~~SAT~~~~v~~ 248 (316)
.|.+. ++| ++=++||.++...+
T Consensus 226 ~i~~l------------------~pl~ilRfgATfkd~y~~ 248 (985)
T COG3587 226 AIKQL------------------NPLLILRFGATFKDEYNN 248 (985)
T ss_pred HHHhh------------------CceEEEEecccchhhhcC
Confidence 33332 334 45599999988773
No 168
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.92 E-value=9e-05 Score=73.11 Aligned_cols=81 Identities=20% Similarity=0.234 Sum_probs=54.5
Q ss_pred HcCCCCCcHHHHHHHHHHh----CCCcEEEEcCCCCchHHHHHHHHHHHhhhcC---CC------C--------------
Q 043110 53 RLGFEAPTKVQAQAIPVIL----SGRDVLVNAATGTGKTVAYLAPIINHLQSYS---PR------I-------------- 105 (316)
Q Consensus 53 ~~g~~~p~~~Q~~~i~~il----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~---~~------~-------------- 105 (316)
+|.|+ |++.|..-+..++ .+.+.++.+|||+|||++.+=..+....... +. .
T Consensus 17 ~fP~q-pY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~ 95 (945)
T KOG1132|consen 17 EFPFQ-PYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGE 95 (945)
T ss_pred eccCC-cchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCC
Confidence 46676 8999988776655 5578999999999999987654444332221 00 0
Q ss_pred ----CC------CCCeeEEEEeCChHHHHHHHHHHHHHH
Q 043110 106 ----DR------SSGTFALVLVPTSELCLLVYEILQKLL 134 (316)
Q Consensus 106 ----~~------~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 134 (316)
.. -.-+++.|-+-|..-..|+.+.+++..
T Consensus 96 ~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 96 KSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred chhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 00 114678888888888888887776653
No 169
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=97.90 E-value=8.1e-05 Score=75.61 Aligned_cols=161 Identities=20% Similarity=0.249 Sum_probs=99.2
Q ss_pred CCCcHHHHHHHHHHh----CCCcEEEEcCCCCchHHH---HHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHH
Q 043110 57 EAPTKVQAQAIPVIL----SGRDVLVNAATGTGKTVA---YLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEI 129 (316)
Q Consensus 57 ~~p~~~Q~~~i~~il----~g~d~li~a~TGsGKT~~---~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~ 129 (316)
.+++.+|.+.+..++ .+.++|+.-..|-|||+- |+--+.+.... .|+ .|||+|...+ ..+.+.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~--------~gp-flvvvplst~-~~W~~e 438 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQI--------HGP-FLVVVPLSTI-TAWERE 438 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhc--------cCC-eEEEeehhhh-HHHHHH
Confidence 578999999887765 678999999999999974 33333333222 233 6888898664 445566
Q ss_pred HHHHHhhcCCceeEEeeCCCChHHHHHHHh----c-----CCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhc
Q 043110 130 LQKLLHRFRWIVPGYVMGGGNRSKEKARLR----K-----GISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILE 200 (316)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~-----~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~ 200 (316)
+..+. .+.+.+.+|.....+..+... . ..+++++|.+.++.--...+. -...++++||||+|-.
T Consensus 439 f~~w~----~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~---i~w~~~~vDeahrLkN 511 (1373)
T KOG0384|consen 439 FETWT----DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSK---IPWRYLLVDEAHRLKN 511 (1373)
T ss_pred HHHHh----hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhcc---CCcceeeecHHhhcCc
Confidence 66665 244445555555444433321 1 368999999887652222111 2457999999999864
Q ss_pred CCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeec-chhHHHHHHH
Q 043110 201 LGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATL-NEKVNHLTKI 252 (316)
Q Consensus 201 ~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~-~~~v~~~~~~ 252 (316)
. ...+...+..+.. ...++++.|. -.++.+|..+
T Consensus 512 ~--~~~l~~~l~~f~~----------------~~rllitgTPlQNsikEL~sL 546 (1373)
T KOG0384|consen 512 D--ESKLYESLNQFKM----------------NHRLLITGTPLQNSLKELWSL 546 (1373)
T ss_pred h--HHHHHHHHHHhcc----------------cceeeecCCCccccHHHHHHH
Confidence 2 2333334444442 3446667775 4456666643
No 170
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.89 E-value=0.00013 Score=69.93 Aligned_cols=75 Identities=20% Similarity=0.170 Sum_probs=60.2
Q ss_pred HHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHH
Q 043110 52 ERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQ 131 (316)
Q Consensus 52 ~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~ 131 (316)
...++.+++.-|..|+.+++...=.++++|.|+|||.+-.--+++.+.. .+..+|+++|+.--+.|+++.+.
T Consensus 404 s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~--------~~~~VLvcApSNiAVDqLaeKIh 475 (935)
T KOG1802|consen 404 SVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--------HAGPVLVCAPSNIAVDQLAEKIH 475 (935)
T ss_pred cCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh--------cCCceEEEcccchhHHHHHHHHH
Confidence 3457788999999999999999999999999999998864434443333 23449999999999999998887
Q ss_pred HHH
Q 043110 132 KLL 134 (316)
Q Consensus 132 ~~~ 134 (316)
+-+
T Consensus 476 ~tg 478 (935)
T KOG1802|consen 476 KTG 478 (935)
T ss_pred hcC
Confidence 754
No 171
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.84 E-value=0.00044 Score=69.46 Aligned_cols=67 Identities=21% Similarity=0.220 Sum_probs=48.3
Q ss_pred HHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHH
Q 043110 52 ERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLV 126 (316)
Q Consensus 52 ~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~ 126 (316)
...++ .+++-|++|+..+..++-+++.++.|+|||... -.++..+.... ....+++++||-.-+..+
T Consensus 318 ~~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~------~~~~v~l~ApTg~AA~~L 384 (720)
T TIGR01448 318 KKLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELG------GLLPVGLAAPTGRAAKRL 384 (720)
T ss_pred HhcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcC------CCceEEEEeCchHHHHHH
Confidence 44565 489999999999998889999999999999753 23444443311 014488899998776543
No 172
>PF13245 AAA_19: Part of AAA domain
Probab=97.79 E-value=0.00012 Score=51.57 Aligned_cols=60 Identities=33% Similarity=0.396 Sum_probs=39.2
Q ss_pred HHHHHhCCCc-EEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHH
Q 043110 66 AIPVILSGRD-VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEIL 130 (316)
Q Consensus 66 ~i~~il~g~d-~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~ 130 (316)
++...+.+.. +++.+|.|||||...+-.+...+.... .. +.++++++|++..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~----~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARA----DP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhc----CC-CCeEEEECCCHHHHHHHHHHH
Confidence 3443334444 566999999999775444444442211 11 445999999999999888777
No 173
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=97.75 E-value=0.00029 Score=68.13 Aligned_cols=156 Identities=19% Similarity=0.230 Sum_probs=100.5
Q ss_pred CcHHHHHHHHHHh----CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHH
Q 043110 59 PTKVQAQAIPVIL----SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL 134 (316)
Q Consensus 59 p~~~Q~~~i~~il----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 134 (316)
+..+|.+.+.++. .|-+.|+.-..|-|||.-. +.++.++.....- .|| .|||+|..-| .++...+.
T Consensus 568 LKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQs-isvlAhLaE~~nI----wGP-FLVVtpaStL----~NWaqEis 637 (1185)
T KOG0388|consen 568 LKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQS-ISVLAHLAETHNI----WGP-FLVVTPASTL----HNWAQEIS 637 (1185)
T ss_pred hHHHhhccHHHHHHHHHccccceehhhhccchhHHH-HHHHHHHHHhccC----CCc-eEEeehHHHH----hHHHHHHH
Confidence 4567887776655 6788999999999999875 5566777653321 233 6888998766 44555555
Q ss_pred hhcCCceeEEeeCCCChHHHHHHH---------hcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHH
Q 043110 135 HRFRWIVPGYVMGGGNRSKEKARL---------RKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGK 205 (316)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l---------~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~ 205 (316)
..++...+.-..|+.+.....+.+ ..+.||+|++...+..-- +.+.--...+.|+|||+.+-.+ ...
T Consensus 638 rFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDe---ky~qkvKWQYMILDEAQAIKSS-sS~ 713 (1185)
T KOG0388|consen 638 RFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDE---KYLQKVKWQYMILDEAQAIKSS-SSS 713 (1185)
T ss_pred HhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechH---HHHHhhhhhheehhHHHHhhhh-hhh
Confidence 555666666666776665555442 234789999987653211 1111124579999999987654 344
Q ss_pred HHHHHHHHhccCcccccCCCCccccccceEEEEeeecchh
Q 043110 206 EIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEK 245 (316)
Q Consensus 206 ~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~ 245 (316)
.+..++..- .+..++++.|.-.+
T Consensus 714 RWKtLLsF~-----------------cRNRLLLTGTPIQN 736 (1185)
T KOG0388|consen 714 RWKTLLSFK-----------------CRNRLLLTGTPIQN 736 (1185)
T ss_pred HHHHHhhhh-----------------ccceeeecCCccch
Confidence 455555442 34567888886543
No 174
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.71 E-value=0.00017 Score=64.78 Aligned_cols=124 Identities=23% Similarity=0.198 Sum_probs=73.9
Q ss_pred CcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcC
Q 043110 59 PTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFR 138 (316)
Q Consensus 59 p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 138 (316)
+++-|.+++.. ..++++|.|+.|||||.+.+--++..+.... ...-++|++++|+..+.++.+++...+....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-----~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~ 73 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-----VPPERILVLTFTNAAAQEMRERIRELLEEEQ 73 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-----STGGGEEEEESSHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-----CChHHheecccCHHHHHHHHHHHHHhcCccc
Confidence 47889999977 6778999999999999987665665555432 1233499999999999999999988765432
Q ss_pred CceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCcccc-CceeEEEEecch
Q 043110 139 WIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLH-TNLRWIIFDEAD 196 (316)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~-~~l~~lViDEad 196 (316)
... ...............+-|+|-..+...+-....... -.-.+-++|+.+
T Consensus 74 ~~~-------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 74 QES-------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp HCC-------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred ccc-------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 100 000011112222346788887766554422111110 112355667666
No 175
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.67 E-value=0.00034 Score=69.56 Aligned_cols=132 Identities=23% Similarity=0.266 Sum_probs=90.9
Q ss_pred HcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHH
Q 043110 53 RLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQK 132 (316)
Q Consensus 53 ~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 132 (316)
-+|.. |..+|...- +.....-++.+.||-|||++..+|+.-.... |-.+.+++....||.--.+++..
T Consensus 76 vlg~~-~~dVQliG~--i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~---------gkgVhvVTvNdYLA~RDae~m~~ 143 (822)
T COG0653 76 VLGMR-HFDVQLLGG--IVLHLGDIAEMRTGEGKTLVATLPAYLNALA---------GKGVHVVTVNDYLARRDAEWMGP 143 (822)
T ss_pred hcCCC-hhhHHHhhh--hhhcCCceeeeecCCchHHHHHHHHHHHhcC---------CCCcEEeeehHHhhhhCHHHHHH
Confidence 35665 666775544 3344456899999999999999998655444 23388999999999988999999
Q ss_pred HHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHH-HHHHhcC-----CccccCceeEEEEecchhhh
Q 043110 133 LLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHL-LDHLKHT-----SSFLHTNLRWIIFDEADRIL 199 (316)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~~-----~~~~~~~l~~lViDEad~l~ 199 (316)
+...++ +.+++...+.......... .+||..+|...| +++++-. .......+.+-|+||+|.++
T Consensus 144 l~~~LG-lsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 144 LYEFLG-LSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred HHHHcC-CceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 988766 5566666666544443333 479999999865 2333211 11123467899999999765
No 176
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.65 E-value=5.6e-05 Score=71.24 Aligned_cols=200 Identities=10% Similarity=-0.035 Sum_probs=129.0
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHH
Q 043110 48 DQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVY 127 (316)
Q Consensus 48 ~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~ 127 (316)
..+.+.+.-+....+|.+++..+.+|++.++...|.+||.++|.+.....+... .....+++.|+.+++....
T Consensus 276 ~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~-------~~s~~~~~~~~~~~~~~~~ 348 (1034)
T KOG4150|consen 276 RSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC-------HATNSLLPSEMVEHLRNGS 348 (1034)
T ss_pred HHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC-------cccceecchhHHHHhhccC
Confidence 333355566677899999999999999999999999999999988877665441 2233788999999886543
Q ss_pred HHHHHHHhhcCCce--eEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCC-c--cccCceeEEEEecchhhhcC-
Q 043110 128 EILQKLLHRFRWIV--PGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTS-S--FLHTNLRWIIFDEADRILEL- 201 (316)
Q Consensus 128 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~-~--~~~~~l~~lViDEad~l~~~- 201 (316)
+...-.....+... ..-.+.+.+...+..-.+.+.+++.+.|..+....--.. . ..+=++.+.+.||+|..+..
T Consensus 349 ~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~ 428 (1034)
T KOG4150|consen 349 KGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPT 428 (1034)
T ss_pred CceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecch
Confidence 32211111111111 112234555555666667788999999998765443211 1 12224568899999976643
Q ss_pred --CcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCE-EEEcCC
Q 043110 202 --GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPV-LIGLDE 264 (316)
Q Consensus 202 --~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~-~i~~~~ 264 (316)
.....++.+++.+.-. ..+.+.|++-.|||+...++.....+--+-+ .|..+.
T Consensus 429 ~~~~~~~~R~L~~L~~~F----------~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DG 484 (1034)
T KOG4150|consen 429 KALAQDQLRALSDLIKGF----------EASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDG 484 (1034)
T ss_pred hhHHHHHHHHHHHHHHHH----------HhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecC
Confidence 1334555555554321 1233789999999999999988887755554 444433
No 177
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.64 E-value=0.0004 Score=70.47 Aligned_cols=141 Identities=18% Similarity=0.229 Sum_probs=89.1
Q ss_pred CcHHHHHHHHHHh----CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHH
Q 043110 59 PTKVQAQAIPVIL----SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL 134 (316)
Q Consensus 59 p~~~Q~~~i~~il----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 134 (316)
++.+|...++++. +.-|.|+.-..|-|||.-. +.++.++...... ..--|||+||.-+ ..+.-.+++|+
T Consensus 616 LReYQkiGLdWLatLYeknlNGILADEmGLGKTIQt-ISllAhLACeegn-----WGPHLIVVpTsvi-LnWEMElKRwc 688 (1958)
T KOG0391|consen 616 LREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQT-ISLLAHLACEEGN-----WGPHLIVVPTSVI-LNWEMELKRWC 688 (1958)
T ss_pred HHHHHHhhHHHHHHHHHhcccceehhhhcccchhHH-HHHHHHHHhcccC-----CCCceEEeechhh-hhhhHHHhhhC
Confidence 4678888887765 3457899999999999864 5677777664332 2226899999654 33455566665
Q ss_pred hhcCCceeEEeeCCCChHHHHHHHhc---CCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHH
Q 043110 135 HRFRWIVPGYVMGGGNRSKEKARLRK---GISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 211 (316)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~ 211 (316)
..+.+...+|......+.+.-.. ..||-|++...++.-+. .+.-...+|+|+||||.+-.+ -...+..++
T Consensus 689 ---PglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~---AFkrkrWqyLvLDEaqnIKnf-ksqrWQAll 761 (1958)
T KOG0391|consen 689 ---PGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLT---AFKRKRWQYLVLDEAQNIKNF-KSQRWQALL 761 (1958)
T ss_pred ---CcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHH---HHHhhccceeehhhhhhhcch-hHHHHHHHh
Confidence 44555555555444333332222 25788888777665443 233357889999999998764 233455555
Q ss_pred HH
Q 043110 212 DI 213 (316)
Q Consensus 212 ~~ 213 (316)
+.
T Consensus 762 nf 763 (1958)
T KOG0391|consen 762 NF 763 (1958)
T ss_pred cc
Confidence 44
No 178
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.59 E-value=0.00055 Score=61.68 Aligned_cols=67 Identities=25% Similarity=0.272 Sum_probs=49.3
Q ss_pred HHcCCCCCcHHHHHHHHHHhCCC-c-EEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHH
Q 043110 52 ERLGFEAPTKVQAQAIPVILSGR-D-VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCL 124 (316)
Q Consensus 52 ~~~g~~~p~~~Q~~~i~~il~g~-d-~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~ 124 (316)
+-+|+..-+..|..|+..++... + +.+.++.|||||+.++.+.+......+. .-++||-=|+..+.+
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~------y~KiiVtRp~vpvG~ 290 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR------YRKIIVTRPTVPVGE 290 (436)
T ss_pred hhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh------hceEEEecCCcCccc
Confidence 44688877888899999888654 2 7889999999999998888877665322 233666667766553
No 179
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.55 E-value=0.0014 Score=67.59 Aligned_cols=62 Identities=23% Similarity=0.219 Sum_probs=46.0
Q ss_pred CCCCCcHHHHHHHHHHhCCCc-EEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHH
Q 043110 55 GFEAPTKVQAQAIPVILSGRD-VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLV 126 (316)
Q Consensus 55 g~~~p~~~Q~~~i~~il~g~d-~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~ 126 (316)
|+ .+++-|.+++..++.+++ +++.++.|+|||.+ +-++...+.. .|..++.++||---+..+
T Consensus 344 g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~--------~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 344 GL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA--------AGYEVRGAALSGIAAENL 406 (988)
T ss_pred CC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH--------cCCeEEEecCcHHHHHHH
Confidence 54 489999999999998765 79999999999976 3334444332 255699999997655433
No 180
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.50 E-value=0.00072 Score=52.58 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=13.3
Q ss_pred CCCcEEEEcCCCCchHHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~ 91 (316)
+++-+++.|++|+|||...-
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ----EEEEE-TTSSHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHH
Confidence 34568999999999998753
No 181
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.48 E-value=0.00022 Score=67.01 Aligned_cols=65 Identities=25% Similarity=0.397 Sum_probs=50.0
Q ss_pred CcHHHHHHHHHHhCC-----CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHH
Q 043110 59 PTKVQAQAIPVILSG-----RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL 133 (316)
Q Consensus 59 p~~~Q~~~i~~il~g-----~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 133 (316)
|..-|-+||..+..| +.-.+-+.||||||+.. .+.+.+.... +||++|.+.||.|++..++.+
T Consensus 13 PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~----AnVI~~~~rP--------tLV~AhNKTLAaQLy~Efk~f 80 (663)
T COG0556 13 PAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTM----ANVIAKVQRP--------TLVLAHNKTLAAQLYSEFKEF 80 (663)
T ss_pred CCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHH----HHHHHHhCCC--------eEEEecchhHHHHHHHHHHHh
Confidence 777888888777644 45788999999999873 3333332222 999999999999999999998
Q ss_pred Hh
Q 043110 134 LH 135 (316)
Q Consensus 134 ~~ 135 (316)
+-
T Consensus 81 FP 82 (663)
T COG0556 81 FP 82 (663)
T ss_pred Cc
Confidence 74
No 182
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.34 E-value=0.00096 Score=66.72 Aligned_cols=141 Identities=20% Similarity=0.135 Sum_probs=85.4
Q ss_pred CCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCc-EEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCC
Q 043110 41 GLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRD-VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 119 (316)
Q Consensus 41 ~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d-~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt 119 (316)
.+.+.+.+.. ...++.-|++|+-.++..+| .+|.|=+|+|||..... ++..+.. .|.++|+.+-|
T Consensus 657 ~~~p~~~~~~-----~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~-LIkiL~~--------~gkkVLLtsyT 722 (1100)
T KOG1805|consen 657 VLIPKIKKII-----LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISL-LIKILVA--------LGKKVLLTSYT 722 (1100)
T ss_pred ccCchhhHHH-----HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHH-HHHHHHH--------cCCeEEEEehh
Confidence 3555555432 22578899999999998887 78999999999987544 3333333 24558988888
Q ss_pred hHHHHHHHHHHHHHHhhcCCc----------eeEEeeCCC--ChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCce
Q 043110 120 SELCLLVYEILQKLLHRFRWI----------VPGYVMGGG--NRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNL 187 (316)
Q Consensus 120 ~~L~~Q~~~~~~~~~~~~~~~----------~~~~~~~~~--~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l 187 (316)
..-+..+--.++.+...+-.+ .-.+...+. ........+.+.+.||.||--.+.+.+. ..+.+
T Consensus 723 hsAVDNILiKL~~~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf-----~~R~F 797 (1100)
T KOG1805|consen 723 HSAVDNILIKLKGFGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF-----VNRQF 797 (1100)
T ss_pred hHHHHHHHHHHhccCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh-----hcccc
Confidence 877766555554443221000 000001111 1122333555678899999544444333 33568
Q ss_pred eEEEEecchhhhc
Q 043110 188 RWIIFDEADRILE 200 (316)
Q Consensus 188 ~~lViDEad~l~~ 200 (316)
++.|||||-.++.
T Consensus 798 D~cIiDEASQI~l 810 (1100)
T KOG1805|consen 798 DYCIIDEASQILL 810 (1100)
T ss_pred CEEEEcccccccc
Confidence 9999999987654
No 183
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.30 E-value=0.001 Score=65.88 Aligned_cols=66 Identities=26% Similarity=0.275 Sum_probs=51.2
Q ss_pred CCcHHHHHHHHHHhCC-CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHH
Q 043110 58 APTKVQAQAIPVILSG-RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQK 132 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 132 (316)
.+++.|..|+..++.. ..+++.||+|+|||.+..--+.+.+.. |.++|+++||..-+.++.+.+..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~---------g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR---------GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc---------CCCEEEEcCcHHHHHHHHHHHHh
Confidence 4689999999998876 568999999999997654333333322 34699999999999888887765
No 184
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.29 E-value=0.0016 Score=57.49 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=31.4
Q ss_pred ccCceeEEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecch
Q 043110 183 LHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNE 244 (316)
Q Consensus 183 ~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~ 244 (316)
.....+.+|+||||.|... -+..+.+.++..+. ..++++....+..
T Consensus 126 ~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~---------------~trFiLIcnylsr 171 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSD-AQAALRRTMEDFSR---------------TTRFILICNYLSR 171 (346)
T ss_pred CCCcceEEEEechhhhhHH-HHHHHHHHHhcccc---------------ceEEEEEcCChhh
Confidence 4456789999999998653 45566666666554 5677776655543
No 185
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.28 E-value=0.0019 Score=59.82 Aligned_cols=59 Identities=27% Similarity=0.381 Sum_probs=42.0
Q ss_pred CcHHHHHHHHHH------hCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHH
Q 043110 59 PTKVQAQAIPVI------LSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLV 126 (316)
Q Consensus 59 p~~~Q~~~i~~i------l~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~ 126 (316)
+++-|+.++..+ ..+..+++.|+-|+|||..+- .+.+.+.. .+..+++++||-.-|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~~~--------~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYLRS--------RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHhcc--------ccceEEEecchHHHHHhc
Confidence 678899998888 678889999999999997642 22333322 244589999997665444
No 186
>PRK04296 thymidine kinase; Provisional
Probab=97.25 E-value=0.00097 Score=55.86 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=23.8
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeC
Q 043110 73 GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP 118 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~P 118 (316)
|.=.++.+|+|+|||...+- ++.++.. .+.+++++-|
T Consensus 2 g~i~litG~~GsGKTT~~l~-~~~~~~~--------~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQ-RAYNYEE--------RGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHH-HHHHHHH--------cCCeEEEEec
Confidence 33468899999999976543 3333322 2445888866
No 187
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.23 E-value=0.0062 Score=61.60 Aligned_cols=60 Identities=13% Similarity=0.109 Sum_probs=43.8
Q ss_pred CCcHHHHHHHHHHhCC-CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHH
Q 043110 58 APTKVQAQAIPVILSG-RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLV 126 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~ 126 (316)
.+++-|+.|+..++.+ +-+++.++.|+|||... -.+...+.. .|..++.++||---+..+
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~--------~g~~V~~~ApTg~Aa~~L 412 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEA--------AGYRVIGAALSGKAAEGL 412 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHh--------CCCeEEEEeCcHHHHHHH
Confidence 4899999999998875 55899999999999663 223333332 255699999997665443
No 188
>PRK06526 transposase; Provisional
Probab=97.21 E-value=0.0049 Score=54.05 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=18.2
Q ss_pred HhCCCcEEEEcCCCCchHHHHH
Q 043110 70 ILSGRDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 70 il~g~d~li~a~TGsGKT~~~~ 91 (316)
+-.+.++++.||+|+|||....
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHH
Confidence 3367799999999999997654
No 189
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.18 E-value=0.015 Score=60.62 Aligned_cols=75 Identities=16% Similarity=0.096 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhC-CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCC
Q 043110 41 GLDSTLCDQLRERLGFEAPTKVQAQAIPVILS-GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 119 (316)
Q Consensus 41 ~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~-g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt 119 (316)
++++..+...... ++ .+++-|..++..+.. ++-.++.|+.|+|||.+. -++...+.. .|.+++.++||
T Consensus 366 ~v~~~~l~a~~~~-~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~--------~G~~V~g~ApT 434 (1102)
T PRK13826 366 GVREAVLAATFAR-HA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEA--------AGYRVVGGALA 434 (1102)
T ss_pred CCCHHHHHHHHhc-CC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHH--------cCCeEEEEcCc
Confidence 4555555544232 44 489999999998864 345899999999999763 334443332 35569999999
Q ss_pred hHHHHHH
Q 043110 120 SELCLLV 126 (316)
Q Consensus 120 ~~L~~Q~ 126 (316)
-.-+..+
T Consensus 435 gkAA~~L 441 (1102)
T PRK13826 435 GKAAEGL 441 (1102)
T ss_pred HHHHHHH
Confidence 7665443
No 190
>PRK08181 transposase; Validated
Probab=97.17 E-value=0.02 Score=50.64 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=17.2
Q ss_pred hCCCcEEEEcCCCCchHHHH
Q 043110 71 LSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 71 l~g~d~li~a~TGsGKT~~~ 90 (316)
-.++++++.||+|+|||-..
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa 123 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLA 123 (269)
T ss_pred hcCceEEEEecCCCcHHHHH
Confidence 36789999999999999654
No 191
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.15 E-value=0.0079 Score=46.91 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
++.+++.|++|+|||...
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 678999999999999653
No 192
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.15 E-value=0.0014 Score=56.87 Aligned_cols=86 Identities=19% Similarity=0.214 Sum_probs=59.4
Q ss_pred CCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCC-CChHHHHHHHhc-CCcEEEeCcHHHHHHHhcCCccccC
Q 043110 108 SSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGG-GNRSKEKARLRK-GISILVATPGHLLDHLKHTSSFLHT 185 (316)
Q Consensus 108 ~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~-~~~IlV~Tp~~l~~~l~~~~~~~~~ 185 (316)
...|.+|||+.+---|..+.+.++.+... ...+.-+... ....++...+.+ .++|.||||+|+..++.+ ..+.++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k--~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~-~~L~l~ 200 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGK--DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLEN-GALSLS 200 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccC--CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHc-CCCCcc
Confidence 45688999999977777777777765311 0111111222 234555555654 579999999999999976 677789
Q ss_pred ceeEEEEecch
Q 043110 186 NLRWIIFDEAD 196 (316)
Q Consensus 186 ~l~~lViDEad 196 (316)
++.+||||--|
T Consensus 201 ~l~~ivlD~s~ 211 (252)
T PF14617_consen 201 NLKRIVLDWSY 211 (252)
T ss_pred cCeEEEEcCCc
Confidence 99999999755
No 193
>PHA02533 17 large terminase protein; Provisional
Probab=97.14 E-value=0.0072 Score=58.60 Aligned_cols=137 Identities=15% Similarity=0.121 Sum_probs=81.5
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhc
Q 043110 58 APTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRF 137 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 137 (316)
.|.|+|...+..+..++-.++..+=..|||.+...-++...... .+..+++++|+++-|..+++.++.+....
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~-------~~~~v~i~A~~~~QA~~vF~~ik~~ie~~ 131 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN-------KDKNVGILAHKASMAAEVLDRTKQAIELL 131 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC-------CCCEEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 47899999998876666678889999999998764444333321 24579999999999999998888776543
Q ss_pred CCce-eEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhc
Q 043110 138 RWIV-PGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 215 (316)
Q Consensus 138 ~~~~-~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~ 215 (316)
+... ...... ....-.+.++..|.+.|.+. ....=.+..++++||+|.+-+ +...+..+...+.
T Consensus 132 P~l~~~~i~~~----~~~~I~l~NGS~I~~lss~~--------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~la 196 (534)
T PHA02533 132 PDFLQPGIVEW----NKGSIELENGSKIGAYASSP--------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVIS 196 (534)
T ss_pred HHHhhcceeec----CccEEEeCCCCEEEEEeCCC--------CccCCCCCceEEEeccccCCC--HHHHHHHHHHHHH
Confidence 3211 000000 00111123445554444221 111112467899999997644 3344444544444
No 194
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.08 E-value=0.013 Score=54.41 Aligned_cols=132 Identities=12% Similarity=0.072 Sum_probs=67.0
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEe-C-ChHHHHHHHHHHHHHHhhcCCceeEEeeCCCCh
Q 043110 74 RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV-P-TSELCLLVYEILQKLLHRFRWIVPGYVMGGGNR 151 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~-P-t~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (316)
+.+++.+|||+|||.+..--+........ ..+..+.+++ . .|.-+. ++++.++...+...
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~-----~~g~~V~lit~Dt~R~aa~---eQL~~~a~~lgvpv---------- 236 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSD-----DKSLNIKIITIDNYRIGAK---KQIQTYGDIMGIPV---------- 236 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhc-----cCCCeEEEEeccCccHHHH---HHHHHHhhcCCcce----------
Confidence 46899999999999885432222111100 0123344443 3 333332 22455544332111
Q ss_pred HHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccc
Q 043110 152 SKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNV 231 (316)
Q Consensus 152 ~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~ 231 (316)
..+-++..+...+.. +.+.++++||++.++.. -...+..+.+.+.... .+
T Consensus 237 ------------~~~~~~~~l~~~L~~-----~~~~DlVLIDTaGr~~~--~~~~l~el~~~l~~~~-----------~~ 286 (388)
T PRK12723 237 ------------KAIESFKDLKEEITQ-----SKDFDLVLVDTIGKSPK--DFMKLAEMKELLNACG-----------RD 286 (388)
T ss_pred ------------EeeCcHHHHHHHHHH-----hCCCCEEEEcCCCCCcc--CHHHHHHHHHHHHhcC-----------CC
Confidence 112234444444433 24678999999998753 2223445544443210 01
Q ss_pred cceEEEEeeecc-hhHHHHHHHh
Q 043110 232 KRQNLLLSATLN-EKVNHLTKIS 253 (316)
Q Consensus 232 ~~q~i~~SAT~~-~~v~~~~~~~ 253 (316)
.-.++.+|||.. .++.+..+.+
T Consensus 287 ~e~~LVlsat~~~~~~~~~~~~~ 309 (388)
T PRK12723 287 AEFHLAVSSTTKTSDVKEIFHQF 309 (388)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHh
Confidence 235677899985 4455666666
No 195
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.06 E-value=0.029 Score=44.78 Aligned_cols=38 Identities=29% Similarity=0.352 Sum_probs=23.3
Q ss_pred EEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHH
Q 043110 76 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSEL 122 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L 122 (316)
+++.|++|+|||.....-+... .. .+..++++......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~-~~--------~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI-AT--------KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHH-Hh--------cCCEEEEEECCcch
Confidence 6789999999998654333222 22 13447777655443
No 196
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.00 E-value=0.0069 Score=62.37 Aligned_cols=137 Identities=20% Similarity=0.164 Sum_probs=83.9
Q ss_pred CCCcHHHHHHHHHHh-----CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHH
Q 043110 57 EAPTKVQAQAIPVIL-----SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQ 131 (316)
Q Consensus 57 ~~p~~~Q~~~i~~il-----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~ 131 (316)
..+.++|.+.+..+. .+.+.++....|.|||+..+..+...... .. .....++|++|+ +++.++.+.+.
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~-~~----~~~~~~liv~p~-s~~~nw~~e~~ 410 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLES-IK----VYLGPALIVVPA-SLLSNWKREFE 410 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhc-cc----CCCCCeEEEecH-HHHHHHHHHHh
Confidence 456788988887644 36678888999999998765444331211 11 113349999998 55677777776
Q ss_pred HHHhhcCCceeEEeeCCCCh----HHHHHHHhcC-----CcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcC
Q 043110 132 KLLHRFRWIVPGYVMGGGNR----SKEKARLRKG-----ISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILEL 201 (316)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~-----~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~ 201 (316)
++...... .....|.... ......+... .+++++|.+.+.........+.-....++|+||+|.+-..
T Consensus 411 k~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~ 487 (866)
T COG0553 411 KFAPDLRL--VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKND 487 (866)
T ss_pred hhCccccc--eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhh
Confidence 66543321 3334443331 2233333221 6899999988877432212233346789999999996553
No 197
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=96.82 E-value=0.0017 Score=61.46 Aligned_cols=102 Identities=19% Similarity=0.157 Sum_probs=64.7
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHH
Q 043110 74 RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSK 153 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (316)
+-++-++||.||||.- +++++..-+ .+++.-|.|-||.++++.+...+..+. ++.|......
T Consensus 192 kIi~H~GPTNSGKTy~----ALqrl~~ak---------sGvycGPLrLLA~EV~~r~na~gipCd-----L~TGeE~~~~ 253 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYR----ALQRLKSAK---------SGVYCGPLRLLAHEVYDRLNALGIPCD-----LLTGEERRFV 253 (700)
T ss_pred eEEEEeCCCCCchhHH----HHHHHhhhc---------cceecchHHHHHHHHHHHhhhcCCCcc-----ccccceeeec
Confidence 3467789999999987 567666522 289999999999999999888664433 2222211111
Q ss_pred HHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcH
Q 043110 154 EKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG 204 (316)
Q Consensus 154 ~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~ 204 (316)
.-. .+.++.+-||-++.. . -...+..||||++.|-|...+
T Consensus 254 ~~~--~~~a~hvScTVEM~s--------v-~~~yeVAViDEIQmm~Dp~RG 293 (700)
T KOG0953|consen 254 LDN--GNPAQHVSCTVEMVS--------V-NTPYEVAVIDEIQMMRDPSRG 293 (700)
T ss_pred CCC--CCcccceEEEEEEee--------c-CCceEEEEehhHHhhcCcccc
Confidence 100 112456666654331 1 135678999999988876443
No 198
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.78 E-value=0.0042 Score=48.04 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
+..+++.+|+|+|||...
T Consensus 2 ~~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA 19 (148)
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 467899999999999874
No 199
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=96.77 E-value=0.0024 Score=64.09 Aligned_cols=130 Identities=17% Similarity=0.234 Sum_probs=77.9
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHH
Q 043110 58 APTKVQAQAIPVIL----SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL 133 (316)
Q Consensus 58 ~p~~~Q~~~i~~il----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 133 (316)
++.++|...+.++. +.-+-|+.-.+|-|||..- +.++..+...+.. .|| -||++|+--|.. +...+..+
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQt-IsLitYLmE~K~~----~GP-~LvivPlstL~N-W~~Ef~kW 466 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQT-ISLITYLMEHKQM----QGP-FLIIVPLSTLVN-WSSEFPKW 466 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHH-HHHHHHHHHHccc----CCC-eEEeccccccCC-chhhcccc
Confidence 67889999887765 3347899999999999874 4455555554332 344 689999988864 23333333
Q ss_pred HhhcCCceeEEeeCCCChHH--HHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhc
Q 043110 134 LHRFRWIVPGYVMGGGNRSK--EKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILE 200 (316)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~ 200 (316)
. +.+......|...... .........+|+++|.+.+.. ....+.--+..++||||.|+|-.
T Consensus 467 a---PSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik---dk~lLsKI~W~yMIIDEGHRmKN 529 (1157)
T KOG0386|consen 467 A---PSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK---DKALLSKISWKYMIIDEGHRMKN 529 (1157)
T ss_pred c---cceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC---CHHHHhccCCcceeecccccccc
Confidence 2 3333333222222111 111222457999999887654 11111112456999999999854
No 200
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.76 E-value=0.024 Score=46.90 Aligned_cols=48 Identities=27% Similarity=0.236 Sum_probs=31.2
Q ss_pred EEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHH
Q 043110 76 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL 133 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 133 (316)
+++.|++|+|||...+--+...+.. |..++|++. .+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~---------g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR---------GEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC---------CCcEEEEEC-CCCHHHHHHHHHHc
Confidence 6899999999998754333333322 344888864 45566776666655
No 201
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.76 E-value=0.019 Score=54.24 Aligned_cols=76 Identities=21% Similarity=0.207 Sum_probs=46.9
Q ss_pred cCCCCCcHHHHHHHHHHh----CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHH
Q 043110 54 LGFEAPTKVQAQAIPVIL----SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEI 129 (316)
Q Consensus 54 ~g~~~p~~~Q~~~i~~il----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~ 129 (316)
|.|..-+|-|.+=.-.+. .+.+.++.+|+|+|||.+.+--++....... ....+.++.+-|..-.+.....
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p-----~~~~KliYCSRTvpEieK~l~E 86 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYP-----DEHRKLIYCSRTVPEIEKALEE 86 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCC-----cccceEEEecCcchHHHHHHHH
Confidence 677778888866554333 5668999999999999986554444433321 1233466666665544444444
Q ss_pred HHHHH
Q 043110 130 LQKLL 134 (316)
Q Consensus 130 ~~~~~ 134 (316)
++.+.
T Consensus 87 l~~l~ 91 (755)
T KOG1131|consen 87 LKRLM 91 (755)
T ss_pred HHHHH
Confidence 44443
No 202
>PRK14974 cell division protein FtsY; Provisional
Probab=96.72 E-value=0.052 Score=49.51 Aligned_cols=54 Identities=11% Similarity=0.127 Sum_probs=35.5
Q ss_pred ceeEEEEecchhhhc-CCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhc
Q 043110 186 NLRWIIFDEADRILE-LGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISL 254 (316)
Q Consensus 186 ~l~~lViDEad~l~~-~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l 254 (316)
+.++++||.+.++.. ......+..+.+.+.. ..-++.++||...+....++.|.
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~p---------------d~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKP---------------DLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCC---------------ceEEEeeccccchhHHHHHHHHH
Confidence 456899999998752 2345566666555443 55677888888766666555553
No 203
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.72 E-value=0.039 Score=51.15 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=16.6
Q ss_pred CcEEEEcCCCCchHHHHHHHH
Q 043110 74 RDVLVNAATGTGKTVAYLAPI 94 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~lp~ 94 (316)
+.+.+.+|||+|||.....-+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHH
Confidence 468999999999998764433
No 204
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.71 E-value=0.059 Score=49.82 Aligned_cols=128 Identities=17% Similarity=0.171 Sum_probs=64.7
Q ss_pred CcccCCCCHHHHHHHHHHcCC----CCC---cHHHHHHHHH----H-------hCCCcEEEEcCCCCchHHHHHHHHHHH
Q 043110 36 CFSSLGLDSTLCDQLRERLGF----EAP---TKVQAQAIPV----I-------LSGRDVLVNAATGTGKTVAYLAPIINH 97 (316)
Q Consensus 36 ~f~~~~l~~~l~~~l~~~~g~----~~p---~~~Q~~~i~~----i-------l~g~d~li~a~TGsGKT~~~~lp~l~~ 97 (316)
.+.+.|+++.+.+.|.+.+.- ..+ ..+....+.. + ..|..+++.+|||+|||....--+...
T Consensus 82 ~L~~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 82 YLFAAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred HHHHCCCCHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 355678888888777554421 111 1222222211 1 135679999999999998864433332
Q ss_pred hhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHH
Q 043110 98 LQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHL 172 (316)
Q Consensus 98 l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l 172 (316)
..... ..++.+++ +...-.--.+.++.++..++ ........+.........+.+.--|+|=|+|+.
T Consensus 162 ~~~~G-------~~~V~lit-~D~~R~ga~EqL~~~a~~~g-v~~~~~~~~~~l~~~l~~l~~~DlVLIDTaG~~ 227 (374)
T PRK14722 162 VMRFG-------ASKVALLT-TDSYRIGGHEQLRIFGKILG-VPVHAVKDGGDLQLALAELRNKHMVLIDTIGMS 227 (374)
T ss_pred HHhcC-------CCeEEEEe-cccccccHHHHHHHHHHHcC-CceEecCCcccHHHHHHHhcCCCEEEEcCCCCC
Confidence 22211 11233333 22211112345555555544 233333344444444455554445889999855
No 205
>PRK06921 hypothetical protein; Provisional
Probab=96.68 E-value=0.047 Score=48.22 Aligned_cols=45 Identities=20% Similarity=0.112 Sum_probs=27.1
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLL 125 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q 125 (316)
.+..+++.|++|+|||... .++...+... .+..++++. ..++..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~~~-------~g~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELMRK-------KGVPVLYFP-FVEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHhhh-------cCceEEEEE-HHHHHHH
Confidence 3567999999999999654 3344444431 133466655 3444433
No 206
>PRK08116 hypothetical protein; Validated
Probab=96.67 E-value=0.069 Score=47.24 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=19.0
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHhhh
Q 043110 75 DVLVNAATGTGKTVAYLAPIINHLQS 100 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~lp~l~~l~~ 100 (316)
.+++.|++|+|||.... ++.+.+..
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~~ 140 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELIE 140 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHH
Confidence 49999999999997653 45666554
No 207
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=96.57 E-value=0.075 Score=52.19 Aligned_cols=161 Identities=17% Similarity=0.157 Sum_probs=92.3
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHH
Q 043110 44 STLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELC 123 (316)
Q Consensus 44 ~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~ 123 (316)
..+-+.|+..|+...++. .++ .....+-.++..|--.|||.... +++..+... ..|.+++|.+|.+..+
T Consensus 229 ~r~~~~lk~~Fdi~~~s~---~~~-~~fkqk~tVflVPRR~GKTwivv-~iI~~ll~s------~~Gi~IgytAH~~~ts 297 (738)
T PHA03368 229 ERVERFLRTVFNTPLFSD---AAV-RHFRQRATVFLVPRRHGKTWFLV-PLIALALAT------FRGIKIGYTAHIRKAT 297 (738)
T ss_pred HHHHHHHHHHcCCccccH---HHH-HHhhccceEEEecccCCchhhHH-HHHHHHHHh------CCCCEEEEEcCcHHHH
Confidence 344455544455544332 222 23366778999999999998655 666655531 2367799999999999
Q ss_pred HHHHHHHHHHHhhcCCc-eeEEeeCCCChHHHHHHHhcC--CcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhc
Q 043110 124 LLVYEILQKLLHRFRWI-VPGYVMGGGNRSKEKARLRKG--ISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILE 200 (316)
Q Consensus 124 ~Q~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~--~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~ 200 (316)
+.+++.+.......... ...... |... .-.+.++ ..|..++ ..+.+...-..++++|+|||+-+-+
T Consensus 298 ~~vF~eI~~~le~~f~~~~v~~vk-Ge~I---~i~f~nG~kstI~FaS-------arntNsiRGqtfDLLIVDEAqFIk~ 366 (738)
T PHA03368 298 EPVFEEIGARLRQWFGASRVDHVK-GETI---SFSFPDGSRSTIVFAS-------SHNTNGIRGQDFNLLFVDEANFIRP 366 (738)
T ss_pred HHHHHHHHHHHhhhcchhheeeec-CcEE---EEEecCCCccEEEEEe-------ccCCCCccCCcccEEEEechhhCCH
Confidence 99999998877642111 111111 1000 0011111 1333332 1222223234789999999998865
Q ss_pred CCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecch
Q 043110 201 LGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNE 244 (316)
Q Consensus 201 ~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~ 244 (316)
+.+..++-.+... ++++|++|.|-+.
T Consensus 367 ----~al~~ilp~l~~~--------------n~k~I~ISS~Ns~ 392 (738)
T PHA03368 367 ----DAVQTIMGFLNQT--------------NCKIIFVSSTNTG 392 (738)
T ss_pred ----HHHHHHHHHHhcc--------------CccEEEEecCCCC
Confidence 4455555444432 6778888877443
No 208
>PRK08727 hypothetical protein; Validated
Probab=96.54 E-value=0.028 Score=48.64 Aligned_cols=16 Identities=31% Similarity=0.349 Sum_probs=13.7
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
.+++.|++|+|||-..
T Consensus 43 ~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 43 WLYLSGPAGTGKTHLA 58 (233)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4999999999999543
No 209
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.54 E-value=0.11 Score=43.57 Aligned_cols=51 Identities=22% Similarity=0.308 Sum_probs=28.9
Q ss_pred ceeEEEEecchhhhc-CCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHH
Q 043110 186 NLRWIIFDEADRILE-LGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTK 251 (316)
Q Consensus 186 ~l~~lViDEad~l~~-~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~ 251 (316)
+.++++||-+-+... .....++..+++.+.. ..-.+.+|||...+....+.
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~---------------~~~~LVlsa~~~~~~~~~~~ 134 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNP---------------DEVHLVLSATMGQEDLEQAL 134 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSS---------------SEEEEEEEGGGGGHHHHHHH
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCC---------------ccceEEEecccChHHHHHHH
Confidence 466788887755331 1233456666666543 45567788888766544333
No 210
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.50 E-value=0.076 Score=46.22 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=18.8
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHhhh
Q 043110 74 RDVLVNAATGTGKTVAYLAPIINHLQS 100 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~lp~l~~l~~ 100 (316)
..+++.+++|+|||.... ++...+..
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~ 125 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLL 125 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHh
Confidence 469999999999997643 44445543
No 211
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=96.50 E-value=0.024 Score=60.72 Aligned_cols=124 Identities=20% Similarity=0.173 Sum_probs=79.1
Q ss_pred CcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcC
Q 043110 59 PTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFR 138 (316)
Q Consensus 59 p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 138 (316)
.|+-|.++|.. .|+++++.|..|||||.+.+--++..+... . .--++++|+=|+.-+.++.+++........
T Consensus 2 ~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-~-----~~~~il~~tFt~~aa~e~~~ri~~~l~~~~ 73 (1232)
T TIGR02785 2 WTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRG-V-----DIDRLLVVTFTNAAAREMKERIEEALQKAL 73 (1232)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcC-C-----CHhhEEEEeccHHHHHHHHHHHHHHHHHHH
Confidence 58899999973 688999999999999998766666665432 1 112499999999999999888877664321
Q ss_pred CceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCcccc-CceeEEEEecchh
Q 043110 139 WIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLH-TNLRWIIFDEADR 197 (316)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~-~~l~~lViDEad~ 197 (316)
... .......+.+..-...-|+|-..++..+-+.....+ -+-.+=|.||...
T Consensus 74 ~~~-------p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 74 QQE-------PNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred hcC-------chhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 110 011111122222245778998888765544222211 0224556888875
No 212
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.48 E-value=0.017 Score=55.52 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=51.6
Q ss_pred HHHHHHHHHHh-----CC----CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHH
Q 043110 61 KVQAQAIPVIL-----SG----RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQ 131 (316)
Q Consensus 61 ~~Q~~~i~~il-----~g----~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~ 131 (316)
|+|+-.+-.++ .| +.+++..|=|.|||.....-++..+.-. ...+..+++++++++-|..+++.+.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~-----g~~~~~i~~~A~~~~QA~~~f~~~~ 75 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD-----GEPGAEIYCAANTRDQAKIVFDEAK 75 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC-----CccCceEEEEeCCHHHHHHHHHHHH
Confidence 56776666555 22 2589999999999987544444444321 1246679999999999999999999
Q ss_pred HHHhhc
Q 043110 132 KLLHRF 137 (316)
Q Consensus 132 ~~~~~~ 137 (316)
.+....
T Consensus 76 ~~i~~~ 81 (477)
T PF03354_consen 76 KMIEAS 81 (477)
T ss_pred HHHHhC
Confidence 988763
No 213
>PRK05642 DNA replication initiation factor; Validated
Probab=96.48 E-value=0.032 Score=48.30 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=21.0
Q ss_pred ceeEEEEecchhhhcC-CcHHHHHHHHHHhcc
Q 043110 186 NLRWIIFDEADRILEL-GFGKEIEEILDILGS 216 (316)
Q Consensus 186 ~l~~lViDEad~l~~~-~~~~~i~~i~~~l~~ 216 (316)
+.++||+|++|.+... .....+-.+++.+..
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~ 128 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRD 128 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHh
Confidence 4568999999987543 345556677766654
No 214
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.47 E-value=0.07 Score=57.67 Aligned_cols=62 Identities=27% Similarity=0.261 Sum_probs=44.7
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEcCCCCchHHHH--HHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHH
Q 043110 58 APTKVQAQAIPVILSG--RDVLVNAATGTGKTVAY--LAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLV 126 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g--~d~li~a~TGsGKT~~~--~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~ 126 (316)
.+++-|++|+..++.+ +-+++++..|+|||... ++.++..+.. ..+..++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e-------~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE-------SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh-------ccCceEEEEechHHHHHHH
Confidence 5899999999999966 55999999999999873 2223332221 2345688899997766544
No 215
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.44 E-value=0.038 Score=52.71 Aligned_cols=43 Identities=14% Similarity=0.150 Sum_probs=25.9
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHH
Q 043110 75 DVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLL 125 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q 125 (316)
.+++.||+|+|||... -++.+.+... ..+..++++. ..++..+
T Consensus 150 ~l~l~G~~G~GKThL~-~ai~~~~~~~------~~~~~v~yi~-~~~~~~~ 192 (450)
T PRK00149 150 PLFIYGGVGLGKTHLL-HAIGNYILEK------NPNAKVVYVT-SEKFTND 192 (450)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHHHh------CCCCeEEEEE-HHHHHHH
Confidence 4899999999999764 3344444432 1244566664 3444433
No 216
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.44 E-value=0.04 Score=52.52 Aligned_cols=47 Identities=19% Similarity=0.185 Sum_probs=27.9
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHH
Q 043110 75 DVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEI 129 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~ 129 (316)
.+++.|++|+|||-.. -++.+.+... ..+.+++++.+ .++..++...
T Consensus 143 pl~i~G~~G~GKTHLl-~Ai~~~l~~~------~~~~~v~yv~~-~~f~~~~~~~ 189 (450)
T PRK14087 143 PLFIYGESGMGKTHLL-KAAKNYIESN------FSDLKVSYMSG-DEFARKAVDI 189 (450)
T ss_pred ceEEECCCCCcHHHHH-HHHHHHHHHh------CCCCeEEEEEH-HHHHHHHHHH
Confidence 4899999999999543 3444444331 12445776665 4555444433
No 217
>PRK06893 DNA replication initiation factor; Validated
Probab=96.44 E-value=0.023 Score=49.05 Aligned_cols=47 Identities=13% Similarity=0.250 Sum_probs=29.3
Q ss_pred ceeEEEEecchhhhcC-CcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhH
Q 043110 186 NLRWIIFDEADRILEL-GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKV 246 (316)
Q Consensus 186 ~l~~lViDEad~l~~~-~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v 246 (316)
+.++|+|||+|.+... .+...+..+++.+... ..+++++|++.++..
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~--------------~~~illits~~~p~~ 138 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQ--------------GKTLLLISADCSPHA 138 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHc--------------CCcEEEEeCCCChHH
Confidence 5679999999987633 2344455555554321 346677777765443
No 218
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.43 E-value=0.011 Score=59.30 Aligned_cols=70 Identities=20% Similarity=0.143 Sum_probs=52.6
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHH
Q 043110 58 APTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL 134 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 134 (316)
.+++-|++++.+ ....++|.|+.|||||.+..--+...+..... ..-++|+++.|+..|.++.+++..+.
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v-----~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-----QARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC-----CHHHeeeEechHHHHHHHHHHHHHHh
Confidence 478999999865 35678999999999999865555555533111 12349999999999999998887764
No 219
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.35 E-value=0.0047 Score=59.05 Aligned_cols=115 Identities=15% Similarity=0.162 Sum_probs=56.9
Q ss_pred EEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHH-hhcCCceeEEeeCCCChH----
Q 043110 78 VNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL-HRFRWIVPGYVMGGGNRS---- 152 (316)
Q Consensus 78 i~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~-~~~~~~~~~~~~~~~~~~---- 152 (316)
..+.||||||++....+++...+ +. -..|+.|......+.....+..-. ..+- ..-...+++....
T Consensus 2 f~matgsgkt~~ma~lil~~y~k-------gy-r~flffvnq~nilekt~~nftd~~s~kyl-f~e~i~~~d~~i~ikkv 72 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK-------GY-RNFLFFVNQANILEKTKLNFTDSVSSKYL-FSENININDENIEIKKV 72 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh-------ch-hhEEEEecchhHHHHHHhhcccchhhhHh-hhhhhhcCCceeeeeee
Confidence 45789999999865555554433 11 125666665554433322221110 0000 0000111111100
Q ss_pred HHHHHHhcCCcEEEeCcHHHHHHHhcCCc--c---ccCcee-EEEEecchhhhcC
Q 043110 153 KEKARLRKGISILVATPGHLLDHLKHTSS--F---LHTNLR-WIIFDEADRILEL 201 (316)
Q Consensus 153 ~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~--~---~~~~l~-~lViDEad~l~~~ 201 (316)
.....-..+..|..+|-..|...+.+.+. + .+.+.+ +++-||||++...
T Consensus 73 n~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~ 127 (812)
T COG3421 73 NNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTE 127 (812)
T ss_pred cccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhh
Confidence 00001234568999999999887755432 2 233333 4577999998753
No 220
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=96.32 E-value=0.014 Score=58.09 Aligned_cols=66 Identities=23% Similarity=0.404 Sum_probs=50.3
Q ss_pred CCcHHHHHHHHHHhCC-----CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHH
Q 043110 58 APTKVQAQAIPVILSG-----RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQK 132 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g-----~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 132 (316)
.|+..|..+|..+.++ +..++.|-||||||+... .+++.+. ..+|||+|+..+|.|+++.++.
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a-~~~~~~~-----------~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMA-NVIAQVN-----------RPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHH-HHHHHhC-----------CCEEEEECCHHHHHHHHHHHHH
Confidence 4899999999887643 256799999999998742 2332221 1299999999999999999998
Q ss_pred HHh
Q 043110 133 LLH 135 (316)
Q Consensus 133 ~~~ 135 (316)
+..
T Consensus 77 f~p 79 (655)
T TIGR00631 77 FFP 79 (655)
T ss_pred hCC
Confidence 863
No 221
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.31 E-value=0.18 Score=45.90 Aligned_cols=45 Identities=27% Similarity=0.343 Sum_probs=28.0
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLV 126 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~ 126 (316)
.+.++++.|+||+|||... .++...+.. .|..++++. ..+|..++
T Consensus 182 ~~~~Lll~G~~GtGKThLa-~aIa~~l~~--------~g~~V~y~t-~~~l~~~l 226 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLS-NCIAKELLD--------RGKSVIYRT-ADELIEIL 226 (329)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHHH--------CCCeEEEEE-HHHHHHHH
Confidence 3578999999999999754 344444443 133455554 45555443
No 222
>PRK12377 putative replication protein; Provisional
Probab=96.31 E-value=0.09 Score=45.90 Aligned_cols=45 Identities=22% Similarity=0.272 Sum_probs=27.3
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHH
Q 043110 73 GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVY 127 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~ 127 (316)
..++++.|++|+|||-.. .++.+.+... +..+ +.++..+|..++.
T Consensus 101 ~~~l~l~G~~GtGKThLa-~AIa~~l~~~--------g~~v-~~i~~~~l~~~l~ 145 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLA-AAIGNRLLAK--------GRSV-IVVTVPDVMSRLH 145 (248)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHHc--------CCCe-EEEEHHHHHHHHH
Confidence 357999999999999654 3344444431 2224 4445556665543
No 223
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.28 E-value=0.076 Score=59.21 Aligned_cols=62 Identities=15% Similarity=0.178 Sum_probs=45.5
Q ss_pred CCcHHHHHHHHHHhCCC--cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHH
Q 043110 58 APTKVQAQAIPVILSGR--DVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYE 128 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g~--d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~ 128 (316)
.+++-|++++..++... -.++.++.|+|||.+. -.+++.+.. .|..++.++||..-+..+.+
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~~~--------~G~~V~~lAPTgrAA~~L~e 492 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLASE--------QGYEIQIITAGSLSAQELRQ 492 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHHHh--------cCCeEEEEeCCHHHHHHHHH
Confidence 47899999999988764 4899999999999763 333333332 35669999999876655443
No 224
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.24 E-value=0.045 Score=46.80 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=16.5
Q ss_pred CCCcEEEEcCCCCchHHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~ 91 (316)
.+..+++.|++|+|||....
T Consensus 37 ~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 45679999999999997653
No 225
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.24 E-value=0.031 Score=52.67 Aligned_cols=33 Identities=15% Similarity=0.331 Sum_probs=26.7
Q ss_pred CcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHH
Q 043110 59 PTKVQAQAIPVILSGRDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 59 p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~ 91 (316)
|-......+..+..++++++.+++|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 455566677777789999999999999997753
No 226
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=96.21 E-value=0.03 Score=55.94 Aligned_cols=68 Identities=26% Similarity=0.419 Sum_probs=51.5
Q ss_pred CCCCCcHHHHHHHHHHhCC-----CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHH
Q 043110 55 GFEAPTKVQAQAIPVILSG-----RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEI 129 (316)
Q Consensus 55 g~~~p~~~Q~~~i~~il~g-----~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~ 129 (316)
+|. |++.|..++..+.++ +..++.+.+|+||++.+. .++... +..+|||+|+...|.|+++.
T Consensus 10 ~~~-~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia-~l~~~~-----------~r~vLIVt~~~~~A~~l~~d 76 (652)
T PRK05298 10 PYK-PAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMA-NVIARL-----------QRPTLVLAHNKTLAAQLYSE 76 (652)
T ss_pred CCC-CChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHH-HHHHHh-----------CCCEEEEECCHHHHHHHHHH
Confidence 454 999999999887633 256799999999998742 222221 11299999999999999999
Q ss_pred HHHHHh
Q 043110 130 LQKLLH 135 (316)
Q Consensus 130 ~~~~~~ 135 (316)
++.+..
T Consensus 77 L~~~~~ 82 (652)
T PRK05298 77 FKEFFP 82 (652)
T ss_pred HHHhcC
Confidence 988863
No 227
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.18 E-value=0.016 Score=58.64 Aligned_cols=72 Identities=21% Similarity=0.177 Sum_probs=53.5
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHh
Q 043110 57 EAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLH 135 (316)
Q Consensus 57 ~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 135 (316)
..+++-|++++.+ ....++|.|..|||||.+..--+...+....- ..-.+|+|+.|+..|.++.+++.++..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v-----~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENA-----SPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCC-----CHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 4589999999865 34679999999999999865444444432111 123499999999999999998888754
No 228
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.18 E-value=0.058 Score=50.69 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=23.5
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEe
Q 043110 75 DVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 117 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~ 117 (316)
.+++.|++|+|||... -.+.+.+... ..+..++++.
T Consensus 138 ~l~l~G~~G~GKThL~-~ai~~~l~~~------~~~~~v~yi~ 173 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL-HAIGNEILEN------NPNAKVVYVS 173 (405)
T ss_pred eEEEECCCCCcHHHHH-HHHHHHHHHh------CCCCcEEEEE
Confidence 4799999999999764 3445554432 1234577774
No 229
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.17 E-value=0.035 Score=55.62 Aligned_cols=73 Identities=22% Similarity=0.124 Sum_probs=52.7
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHH
Q 043110 55 GFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL 134 (316)
Q Consensus 55 g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 134 (316)
.-..+++-|++|+-. ...+++|.|..|||||.+.+--+...+.... ..+-++|+++.|+..|..+.+++....
T Consensus 193 e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~-----~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 193 ESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQ-----AQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred cCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCC-----CCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 335689999998853 3456899999999999986544444443311 123359999999999999998877654
No 230
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.17 E-value=0.044 Score=46.95 Aligned_cols=109 Identities=19% Similarity=0.228 Sum_probs=62.3
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHH
Q 043110 75 DVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKE 154 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (316)
-+++.|++|+|||-. +-++.+.+.... ++.+++|+... +........++.
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~------~~~~v~y~~~~-~f~~~~~~~~~~---------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQH------PGKRVVYLSAE-EFIREFADALRD---------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHC------TTS-EEEEEHH-HHHHHHHHHHHT----------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhcc------ccccceeecHH-HHHHHHHHHHHc----------------------
Confidence 389999999999973 445555554422 24457777643 333332222211
Q ss_pred HHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcC-CcHHHHHHHHHHhccCcccccCCCCccccccc
Q 043110 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILEL-GFGKEIEEILDILGSRNIASIGEGNEVSNVKR 233 (316)
Q Consensus 155 ~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~-~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~ 233 (316)
.....+.+.+ ...++|+||+.|.+.+. .....+-.+++.+... +.
T Consensus 86 ------------~~~~~~~~~~--------~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~--------------~k 131 (219)
T PF00308_consen 86 ------------GEIEEFKDRL--------RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIES--------------GK 131 (219)
T ss_dssp ------------TSHHHHHHHH--------CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT--------------TS
T ss_pred ------------ccchhhhhhh--------hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhh--------------CC
Confidence 0111222222 35789999999998654 2345666666666542 56
Q ss_pred eEEEEeeecchhHH
Q 043110 234 QNLLLSATLNEKVN 247 (316)
Q Consensus 234 q~i~~SAT~~~~v~ 247 (316)
++|+.|...|..+.
T Consensus 132 ~li~ts~~~P~~l~ 145 (219)
T PF00308_consen 132 QLILTSDRPPSELS 145 (219)
T ss_dssp EEEEEESS-TTTTT
T ss_pred eEEEEeCCCCcccc
Confidence 78887777776654
No 231
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.15 E-value=0.074 Score=58.16 Aligned_cols=64 Identities=22% Similarity=0.234 Sum_probs=44.5
Q ss_pred CCcHHHHHHHHHHhCCC--cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHH
Q 043110 58 APTKVQAQAIPVILSGR--DVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLV 126 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g~--d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~ 126 (316)
.+++.|++|+..++.+. -+++++..|+|||... -.++..+... ....+..++.++||-.-+..+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l----~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTL----PESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHh----hcccCceEEEECCcHHHHHHH
Confidence 58999999999999764 4899999999999763 2233333211 011245588899997766443
No 232
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.15 E-value=0.21 Score=49.41 Aligned_cols=72 Identities=17% Similarity=0.249 Sum_probs=52.2
Q ss_pred CCcHHHHHHHHHHh---CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHH
Q 043110 58 APTKVQAQAIPVIL---SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL 134 (316)
Q Consensus 58 ~p~~~Q~~~i~~il---~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 134 (316)
-|+|.=.+-|..++ ..+-.++.+|-|.|||.+..+.+...+.. .+.+++|.+|...-+.++++.++...
T Consensus 169 ~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f--------~Gi~IlvTAH~~~ts~evF~rv~~~l 240 (752)
T PHA03333 169 APSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF--------LEIDIVVQAQRKTMCLTLYNRVETVV 240 (752)
T ss_pred CCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh--------cCCeEEEECCChhhHHHHHHHHHHHH
Confidence 34666555565554 44568889999999998866555443332 24569999999999999999888887
Q ss_pred hhc
Q 043110 135 HRF 137 (316)
Q Consensus 135 ~~~ 137 (316)
...
T Consensus 241 e~l 243 (752)
T PHA03333 241 HAY 243 (752)
T ss_pred HHh
Confidence 643
No 233
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.12 E-value=0.043 Score=49.62 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=19.8
Q ss_pred ceeEEEEecchhhhcCCcHHHHHHHHHHhcc
Q 043110 186 NLRWIIFDEADRILELGFGKEIEEILDILGS 216 (316)
Q Consensus 186 ~l~~lViDEad~l~~~~~~~~i~~i~~~l~~ 216 (316)
..+++||||+|.+........+..+++..+.
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~ 130 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSK 130 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCC
Confidence 4578999999988333344555555555443
No 234
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.11 E-value=0.037 Score=53.30 Aligned_cols=95 Identities=21% Similarity=0.241 Sum_probs=60.6
Q ss_pred ccCCCCHHHHHHHHHHcCCCCCc----HHHHHHHHHHhC--CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCe
Q 043110 38 SSLGLDSTLCDQLRERLGFEAPT----KVQAQAIPVILS--GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 111 (316)
Q Consensus 38 ~~~~l~~~l~~~l~~~~g~~~p~----~~Q~~~i~~il~--g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~ 111 (316)
++.++.++++....++.--.+++ -+|++-=..|-. ++-++++|..|||||.+++--+...+....... .+.
T Consensus 185 sd~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l---~~k 261 (747)
T COG3973 185 SDTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPL---QAK 261 (747)
T ss_pred cCCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhcccccc---ccC
Confidence 45566666555432553333333 245554444444 345899999999999987655554444432221 122
Q ss_pred eEEEEeCChHHHHHHHHHHHHHHh
Q 043110 112 FALVLVPTSELCLLVYEILQKLLH 135 (316)
Q Consensus 112 ~~lil~Pt~~L~~Q~~~~~~~~~~ 135 (316)
.+||+.|.+-+..-+.+++-.++.
T Consensus 262 ~vlvl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 262 PVLVLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred ceEEEcCcHHHHHHHHHhchhhcc
Confidence 399999999999999999888775
No 235
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.11 E-value=0.019 Score=58.11 Aligned_cols=71 Identities=21% Similarity=0.190 Sum_probs=52.9
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHh
Q 043110 58 APTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLH 135 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 135 (316)
.+++-|++++.. ....++|.|..|||||.+..--+...+....- ..-.+|+|+-|+..|.++.+++.++..
T Consensus 9 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v-----~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 9 SLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENA-----SPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred hcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCC-----ChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 589999999864 34679999999999999865444444432111 123499999999999999998888754
No 236
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.10 E-value=0.14 Score=48.43 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 043110 73 GRDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~ 91 (316)
|+.+++.+|||+|||....
T Consensus 221 ~~~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLA 239 (424)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5578999999999998754
No 237
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.10 E-value=0.16 Score=45.28 Aligned_cols=111 Identities=21% Similarity=0.303 Sum_probs=57.4
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCC---CCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCC
Q 043110 74 RDVLVNAATGTGKTVAYLAPIINHLQSYSPRI---DRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGN 150 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~---~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (316)
.++++.|+||.|||.. ++...+.-+.. ....-+.+.+-+|...-....+..+-... +... ....
T Consensus 62 p~lLivG~snnGKT~I-----i~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l---gaP~-----~~~~ 128 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI-----IERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL---GAPY-----RPRD 128 (302)
T ss_pred CceEEecCCCCcHHHH-----HHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh---Cccc-----CCCC
Confidence 4799999999999985 23333222211 11123556666777766655554332222 1111 0111
Q ss_pred hHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCc--HHHHHHHHHHhcc
Q 043110 151 RSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGF--GKEIEEILDILGS 216 (316)
Q Consensus 151 ~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~--~~~i~~i~~~l~~ 216 (316)
...... .....+++. -.+++|||||.|.++.-.. +..+.+.++.+.+
T Consensus 129 ~~~~~~-------------~~~~~llr~------~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~N 177 (302)
T PF05621_consen 129 RVAKLE-------------QQVLRLLRR------LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGN 177 (302)
T ss_pred CHHHHH-------------HHHHHHHHH------cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhh
Confidence 111110 012344443 3688999999999887432 2344445555543
No 238
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.09 E-value=0.063 Score=48.90 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=29.8
Q ss_pred CcHHHHHHHHHHhCCC----cEEEEcCCCCchHHHHHHHHHHHhhh
Q 043110 59 PTKVQAQAIPVILSGR----DVLVNAATGTGKTVAYLAPIINHLQS 100 (316)
Q Consensus 59 p~~~Q~~~i~~il~g~----d~li~a~TGsGKT~~~~lp~l~~l~~ 100 (316)
.+|||...|..+.... -.++.||.|.|||..+.. +...+..
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~-~A~~llC 48 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER-LAAALLC 48 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH-HHHHHcC
Confidence 5789999998877443 378999999999976543 4444443
No 239
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=96.03 E-value=0.28 Score=47.69 Aligned_cols=144 Identities=17% Similarity=0.200 Sum_probs=88.1
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHH
Q 043110 45 TLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCL 124 (316)
Q Consensus 45 ~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~ 124 (316)
.+.+.|+..||...++. .++.. ...|-.+.-.|--.|||+ +++|++..+... -.|.++.|++.-+..++
T Consensus 178 r~~~~lk~~Fdi~~~s~---~~l~~-FKQkaTVFLVPRRHGKTW-f~VpiIsllL~s------~~gI~IGYvAHqKhvs~ 246 (668)
T PHA03372 178 RVLEYLLHVFDIEFLSE---SSLNI-FKQKATVFLVPRRHGKTW-FIIPIISFLLKN------IIGISIGYVAHQKHVSQ 246 (668)
T ss_pred HHHHHHHHHcCCcccCH---HHHHH-hhccceEEEecccCCcee-hHHHHHHHHHHh------hcCceEEEEeeHHHHHH
Confidence 34445544556554433 23333 355667888899999996 678898888762 34788999999999888
Q ss_pred HHHHHHHHHHhhc-CCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHH----HHHHhcCCccccCceeEEEEecchhhh
Q 043110 125 LVYEILQKLLHRF-RWIVPGYVMGGGNRSKEKARLRKGISILVATPGHL----LDHLKHTSSFLHTNLRWIIFDEADRIL 199 (316)
Q Consensus 125 Q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l----~~~l~~~~~~~~~~l~~lViDEad~l~ 199 (316)
-+++.+...+... +.... .. .++-.|.+.-|+.= .....+.+...-.+..++++||||-+
T Consensus 247 ~Vf~EI~~~lrrwF~~~~v-i~-------------~k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI- 311 (668)
T PHA03372 247 FVLKEVEFRCRRMFPRKHT-IE-------------NKDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFI- 311 (668)
T ss_pred HHHHHHHHHHhhhcCccce-ee-------------ecCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhcc-
Confidence 8777665544332 21111 00 01224556655421 11122333444457889999999986
Q ss_pred cCCcHHHHHHHHHHhccC
Q 043110 200 ELGFGKEIEEILDILGSR 217 (316)
Q Consensus 200 ~~~~~~~i~~i~~~l~~~ 217 (316)
-.+.+..|+-.+...
T Consensus 312 ---~~~a~~tilgfm~q~ 326 (668)
T PHA03372 312 ---KKDAFNTILGFLAQN 326 (668)
T ss_pred ---CHHHHHHhhhhhccc
Confidence 345677777777654
No 240
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.03 E-value=0.11 Score=49.33 Aligned_cols=50 Identities=12% Similarity=0.212 Sum_probs=30.1
Q ss_pred ceeEEEEecchhhhcCC-cHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHH
Q 043110 186 NLRWIIFDEADRILELG-FGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHL 249 (316)
Q Consensus 186 ~l~~lViDEad~l~~~~-~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~ 249 (316)
..++|+|||+|.+.+.. ....+..+++.+... ..++++.|-.-|..+..+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~--------------~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDS--------------GKQIVICSDREPQKLSEF 244 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHc--------------CCeEEEECCCCHHHHHHH
Confidence 46789999999887542 334455555554431 346666555556555544
No 241
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.01 E-value=0.089 Score=53.43 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=16.6
Q ss_pred EEEEcCCCCchHHHHHHHHHHHhh
Q 043110 76 VLVNAATGTGKTVAYLAPIINHLQ 99 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~lp~l~~l~ 99 (316)
++|.|+||+|||++.-. ++..+.
T Consensus 784 LYIyG~PGTGKTATVK~-VLrELq 806 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYS-VIQLLQ 806 (1164)
T ss_pred EEEECCCCCCHHHHHHH-HHHHHH
Confidence 35999999999998543 444443
No 242
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.99 E-value=0.12 Score=45.49 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCchHHHHH
Q 043110 74 RDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~ 91 (316)
.++++.||+|+|||..+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 478999999999998753
No 243
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.97 E-value=0.13 Score=57.53 Aligned_cols=61 Identities=33% Similarity=0.388 Sum_probs=44.0
Q ss_pred CCcHHHHHHHHHHhCCCc--EEEEcCCCCchHHHHH---HHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHH
Q 043110 58 APTKVQAQAIPVILSGRD--VLVNAATGTGKTVAYL---APIINHLQSYSPRIDRSSGTFALVLVPTSELCLLV 126 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g~d--~li~a~TGsGKT~~~~---lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~ 126 (316)
.+++.|+.|+..++.+.| +++++..|+|||.... -++.+.+.. .+..++.++||..-+.++
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~--------~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES--------EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh--------cCCeEEEEeChHHHHHHH
Confidence 589999999999987654 7889999999997641 223333222 255688899997765544
No 244
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.94 E-value=0.0033 Score=51.69 Aligned_cols=124 Identities=21% Similarity=0.231 Sum_probs=53.3
Q ss_pred EEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHH-H
Q 043110 77 LVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKE-K 155 (316)
Q Consensus 77 li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 155 (316)
++.|+-|-|||.+.-+.+...+.. ...+++|.+|+.+-++.+++.+..-+...+... ........ .
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~--------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~-----~~~~~~~~~~ 67 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK--------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKE-----EKKKRIGQII 67 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------------EEEE-SS--S-HHHHHCC--------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh--------cCceEEEecCCHHHHHHHHHHHHhhcccccccc-----cccccccccc
Confidence 578999999998865544333322 124599999999988887776655433221110 00000000 0
Q ss_pred HHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceE
Q 043110 156 ARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQN 235 (316)
Q Consensus 156 ~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~ 235 (316)
.....+..|-...|+.+...- ...+++|||||=.+ -.+.+..+++ ....
T Consensus 68 ~~~~~~~~i~f~~Pd~l~~~~--------~~~DlliVDEAAaI----p~p~L~~ll~-------------------~~~~ 116 (177)
T PF05127_consen 68 KLRFNKQRIEFVAPDELLAEK--------PQADLLIVDEAAAI----PLPLLKQLLR-------------------RFPR 116 (177)
T ss_dssp -----CCC--B--HHHHCCT------------SCEEECTGGGS-----HHHHHHHHC-------------------CSSE
T ss_pred ccccccceEEEECCHHHHhCc--------CCCCEEEEechhcC----CHHHHHHHHh-------------------hCCE
Confidence 000113456666665553311 13478999999876 2344444432 3345
Q ss_pred EEEeeecch
Q 043110 236 LLLSATLNE 244 (316)
Q Consensus 236 i~~SAT~~~ 244 (316)
++||.|+..
T Consensus 117 vv~stTi~G 125 (177)
T PF05127_consen 117 VVFSTTIHG 125 (177)
T ss_dssp EEEEEEBSS
T ss_pred EEEEeeccc
Confidence 677888753
No 245
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.4 Score=44.41 Aligned_cols=25 Identities=28% Similarity=0.567 Sum_probs=18.5
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHhhh
Q 043110 75 DVLVNAATGTGKTVAYLAPIINHLQS 100 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~lp~l~~l~~ 100 (316)
|+++.|+||+|||...-. ++..+..
T Consensus 44 n~~iyG~~GTGKT~~~~~-v~~~l~~ 68 (366)
T COG1474 44 NIIIYGPTGTGKTATVKF-VMEELEE 68 (366)
T ss_pred cEEEECCCCCCHhHHHHH-HHHHHHh
Confidence 699999999999987533 4444444
No 246
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.90 E-value=0.19 Score=43.51 Aligned_cols=18 Identities=11% Similarity=0.244 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
+..+++.||+|+|||-..
T Consensus 45 ~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 357999999999999653
No 247
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.90 E-value=0.068 Score=47.15 Aligned_cols=55 Identities=18% Similarity=0.165 Sum_probs=31.8
Q ss_pred HHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHH
Q 043110 69 VILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQK 132 (316)
Q Consensus 69 ~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 132 (316)
-+..|.-+++.|++|+|||...+--+.+.... .+..+++++-- +-..++...+..
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~--------~g~~vl~iS~E-~~~~~~~~r~~~ 80 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQ--------HGVRVGTISLE-EPVVRTARRLLG 80 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh--------cCceEEEEEcc-cCHHHHHHHHHH
Confidence 34466779999999999997644333332221 14447777632 234444444433
No 248
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.88 E-value=0.033 Score=55.85 Aligned_cols=69 Identities=22% Similarity=0.135 Sum_probs=51.6
Q ss_pred CcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHH
Q 043110 59 PTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL 134 (316)
Q Consensus 59 p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 134 (316)
+++-|++++.. .+.+++|.|+.|||||.+.+--+...+..... ...++|+|+.|+..+.++.+.+.+..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~-----~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGY-----KARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC-----CHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 68899998865 45689999999999999865555555532111 12349999999999999998887654
No 249
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.88 E-value=0.17 Score=45.95 Aligned_cols=44 Identities=27% Similarity=0.376 Sum_probs=31.8
Q ss_pred CCCCcHHHHHHHHHHh----CCC---cEEEEcCCCCchHHHHHHHHHHHhhh
Q 043110 56 FEAPTKVQAQAIPVIL----SGR---DVLVNAATGTGKTVAYLAPIINHLQS 100 (316)
Q Consensus 56 ~~~p~~~Q~~~i~~il----~g~---d~li~a~TGsGKT~~~~lp~l~~l~~ 100 (316)
+..++|||..++..+. .|+ -.++.||.|.||+..+.. +.+.+..
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~-lA~~LlC 52 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA-LAEHVLA 52 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHhC
Confidence 3568899999987766 344 389999999999976543 4444444
No 250
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.86 E-value=0.12 Score=51.68 Aligned_cols=145 Identities=17% Similarity=0.191 Sum_probs=84.2
Q ss_pred CCCCCcHHHHHHHHHHhCCC--cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHH
Q 043110 55 GFEAPTKVQAQAIPVILSGR--DVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQK 132 (316)
Q Consensus 55 g~~~p~~~Q~~~i~~il~g~--d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 132 (316)
....+..-|.+.+..++.++ -+++.|.-|-|||.+.-+.+.. +..... ...++|.+|+.+-++.+++.+.+
T Consensus 211 ~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~-~~~~~~------~~~iiVTAP~~~nv~~Lf~fa~~ 283 (758)
T COG1444 211 CLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAA-AARLAG------SVRIIVTAPTPANVQTLFEFAGK 283 (758)
T ss_pred hcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHH-HHHhcC------CceEEEeCCCHHHHHHHHHHHHH
Confidence 44445555555666666544 4899999999999987766632 222111 34599999999998888877766
Q ss_pred HHhhcCCceeEEeeC-CCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHH
Q 043110 133 LLHRFRWIVPGYVMG-GGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 211 (316)
Q Consensus 133 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~ 211 (316)
-+...+......... |..... -.....|=...|.... ..-+++|||||=.+ -.+.+..++
T Consensus 284 ~l~~lg~~~~v~~d~~g~~~~~----~~~~~~i~y~~P~~a~-----------~~~DllvVDEAAaI----plplL~~l~ 344 (758)
T COG1444 284 GLEFLGYKRKVAPDALGEIREV----SGDGFRIEYVPPDDAQ-----------EEADLLVVDEAAAI----PLPLLHKLL 344 (758)
T ss_pred hHHHhCCccccccccccceeee----cCCceeEEeeCcchhc-----------ccCCEEEEehhhcC----ChHHHHHHH
Confidence 555443211110000 000000 0011224444554322 11578999999876 346666666
Q ss_pred HHhccCcccccCCCCccccccceEEEEeeecch
Q 043110 212 DILGSRNIASIGEGNEVSNVKRQNLLLSATLNE 244 (316)
Q Consensus 212 ~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~ 244 (316)
... +.++||.|+..
T Consensus 345 ~~~-------------------~rv~~sTTIhG 358 (758)
T COG1444 345 RRF-------------------PRVLFSTTIHG 358 (758)
T ss_pred hhc-------------------CceEEEeeecc
Confidence 544 45888999864
No 251
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.78 E-value=0.13 Score=39.45 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=13.1
Q ss_pred EEEEcCCCCchHHHH
Q 043110 76 VLVNAATGTGKTVAY 90 (316)
Q Consensus 76 ~li~a~TGsGKT~~~ 90 (316)
+++.||.|+|||...
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 589999999999864
No 252
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.77 E-value=0.2 Score=46.33 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCCchHHHHHH
Q 043110 73 GRDVLVNAATGTGKTVAYLA 92 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~l 92 (316)
++-+++.+|+|+|||....-
T Consensus 206 ~~ii~lvGptGvGKTTt~ak 225 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVK 225 (407)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45689999999999987543
No 253
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.76 E-value=0.34 Score=39.21 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=38.9
Q ss_pred CceeEEEEecchhhhcCCcH--HHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHH
Q 043110 185 TNLRWIIFDEADRILELGFG--KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKI 252 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~--~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~ 252 (316)
...++||+||+=..+..++- +.+..+++..|. ..-+|+.+-..|+.+.+++..
T Consensus 94 ~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~---------------~~evIlTGr~~p~~l~e~AD~ 148 (159)
T cd00561 94 GEYDLVILDEINYALGYGLLDVEEVVDLLKAKPE---------------DLELVLTGRNAPKELIEAADL 148 (159)
T ss_pred CCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCC---------------CCEEEEECCCCCHHHHHhCce
Confidence 46789999999988877643 455556655544 667888888888888877653
No 254
>PLN03025 replication factor C subunit; Provisional
Probab=95.75 E-value=0.14 Score=46.56 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=19.2
Q ss_pred ceeEEEEecchhhhcCCcHHHHHHHHHHhc
Q 043110 186 NLRWIIFDEADRILELGFGKEIEEILDILG 215 (316)
Q Consensus 186 ~l~~lViDEad~l~~~~~~~~i~~i~~~l~ 215 (316)
..+++||||+|.|... -...+..+++..+
T Consensus 99 ~~kviiiDE~d~lt~~-aq~aL~~~lE~~~ 127 (319)
T PLN03025 99 RHKIVILDEADSMTSG-AQQALRRTMEIYS 127 (319)
T ss_pred CeEEEEEechhhcCHH-HHHHHHHHHhccc
Confidence 4789999999998653 3344555555433
No 255
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.75 E-value=0.15 Score=48.11 Aligned_cols=17 Identities=29% Similarity=0.390 Sum_probs=14.8
Q ss_pred cEEEEcCCCCchHHHHH
Q 043110 75 DVLVNAATGTGKTVAYL 91 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~ 91 (316)
++++.||+|+|||....
T Consensus 38 ~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 38 SMILWGPPGTGKTTLAR 54 (413)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 68999999999997753
No 256
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.73 E-value=0.18 Score=47.94 Aligned_cols=50 Identities=8% Similarity=0.138 Sum_probs=30.6
Q ss_pred ceeEEEEecchhhhcC-CcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHH
Q 043110 186 NLRWIIFDEADRILEL-GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHL 249 (316)
Q Consensus 186 ~l~~lViDEad~l~~~-~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~ 249 (316)
..++|+|||+|.+... .....+-.+++.+... ..|+++.|-+.|..+..+
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~--------------~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTE--------------GKLIVISSTCAPQDLKAM 252 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHC--------------CCcEEEecCCCHHHHhhh
Confidence 5679999999998653 2344555555544321 456666665556665443
No 257
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.72 E-value=0.036 Score=49.07 Aligned_cols=27 Identities=33% Similarity=0.609 Sum_probs=21.6
Q ss_pred EEEEcCCCCchHHHHHHHHHHHhhhcCC
Q 043110 76 VLVNAATGTGKTVAYLAPIINHLQSYSP 103 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~lp~l~~l~~~~~ 103 (316)
+++.+|||||||.. +.+++.++.+...
T Consensus 128 ILVTGpTGSGKSTT-lAamId~iN~~~~ 154 (353)
T COG2805 128 ILVTGPTGSGKSTT-LAAMIDYINKHKA 154 (353)
T ss_pred EEEeCCCCCcHHHH-HHHHHHHHhccCC
Confidence 89999999999976 4668888876443
No 258
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.69 E-value=0.095 Score=44.96 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=15.5
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.+..+++.|++|+|||...
T Consensus 41 ~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3456999999999999653
No 259
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.66 E-value=0.05 Score=46.48 Aligned_cols=31 Identities=26% Similarity=0.465 Sum_probs=24.5
Q ss_pred CceeEEEEecchhhhcCCcHHHHHHHHHHhcc
Q 043110 185 TNLRWIIFDEADRILELGFGKEIEEILDILGS 216 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~ 216 (316)
.+-+.+|+||||.|-+ |-+..+++.++...+
T Consensus 112 grhKIiILDEADSMT~-gAQQAlRRtMEiyS~ 142 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTA-GAQQALRRTMEIYSN 142 (333)
T ss_pred CceeEEEeeccchhhh-HHHHHHHHHHHHHcc
Confidence 4678999999999876 577778877777665
No 260
>CHL00181 cbbX CbbX; Provisional
Probab=95.65 E-value=0.12 Score=46.29 Aligned_cols=20 Identities=35% Similarity=0.493 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCCchHHHHHH
Q 043110 73 GRDVLVNAATGTGKTVAYLA 92 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~l 92 (316)
|.++++.||+|+|||..+-.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45689999999999987643
No 261
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.65 E-value=0.62 Score=45.03 Aligned_cols=55 Identities=16% Similarity=0.288 Sum_probs=31.9
Q ss_pred cccCCCCHHHHHHHHHHcCCC-CCcHHHHHHHHH------------HhCCCcEEEEcCCCCchHHHHH
Q 043110 37 FSSLGLDSTLCDQLRERLGFE-APTKVQAQAIPV------------ILSGRDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 37 f~~~~l~~~l~~~l~~~~g~~-~p~~~Q~~~i~~------------il~g~d~li~a~TGsGKT~~~~ 91 (316)
....|+++.+.+.|..++.-. ....-....... +..|+.+.+.+|||+|||....
T Consensus 301 L~~~Gvs~~la~~L~~~l~~~~~~~~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaa 368 (559)
T PRK12727 301 MDDYGFDAGLTRDVAMQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIA 368 (559)
T ss_pred HHHCCCCHHHHHHHHHhhhcccchhhHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHH
Confidence 455678888777775554221 111111111111 2246678899999999998753
No 262
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.60 E-value=0.022 Score=55.47 Aligned_cols=46 Identities=20% Similarity=0.472 Sum_probs=36.1
Q ss_pred cCCCCCcHHHHHHHHHHh----CCCcEEEEcCCCCchHHHHHHHHHHHhhh
Q 043110 54 LGFEAPTKVQAQAIPVIL----SGRDVLVNAATGTGKTVAYLAPIINHLQS 100 (316)
Q Consensus 54 ~g~~~p~~~Q~~~i~~il----~g~d~li~a~TGsGKT~~~~lp~l~~l~~ 100 (316)
++| +|+.||...+..+. .|+-.|..+|||+|||++.+=+++..+..
T Consensus 12 fPy-~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~ 61 (821)
T KOG1133|consen 12 FPY-TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRD 61 (821)
T ss_pred CCC-CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHH
Confidence 345 49999988776544 78889999999999999987777766643
No 263
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.59 E-value=0.11 Score=48.76 Aligned_cols=146 Identities=15% Similarity=0.199 Sum_probs=78.5
Q ss_pred EEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChH-HHHHHHHHHHHHHhhcCCceeEEeeCCCChHHH
Q 043110 76 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSE-LCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKE 154 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~-L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (316)
.++.++.|||||.+..+-++..+... ..+.+++++-|+.. |-.-++..++.....++... ..-...... .
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~------~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~-~~~~~~~~~--~ 74 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAIN------KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINY-EFKKSKSSM--E 74 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhc------CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChh-heeecCCcc--E
Confidence 67899999999999887777777663 13456899989877 66666677776655443211 000000000 0
Q ss_pred HHHHhc-CCcEEEeCc-HHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCcccccc
Q 043110 155 KARLRK-GISILVATP-GHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVK 232 (316)
Q Consensus 155 ~~~l~~-~~~IlV~Tp-~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~ 232 (316)
. .+.. +..|++..- +.... +. ....+.++.+|||..+.. ..+..++.++.... .
T Consensus 75 i-~~~~~g~~i~f~g~~d~~~~-ik-----~~~~~~~~~idEa~~~~~----~~~~~l~~rlr~~~-------------~ 130 (396)
T TIGR01547 75 I-KILNTGKKFIFKGLNDKPNK-LK-----SGAGIAIIWFEEASQLTF----EDIKELIPRLRETG-------------G 130 (396)
T ss_pred E-EecCCCeEEEeecccCChhH-hh-----CcceeeeehhhhhhhcCH----HHHHHHHHHhhccC-------------C
Confidence 0 0111 233444332 11111 11 123468999999998743 35555555554210 1
Q ss_pred ceEEEEeeecchhHHHHHHHhc
Q 043110 233 RQNLLLSATLNEKVNHLTKISL 254 (316)
Q Consensus 233 ~q~i~~SAT~~~~v~~~~~~~l 254 (316)
.+.+++|.|.+..-.-+.+.+.
T Consensus 131 ~~~i~~t~NP~~~~~w~~~~f~ 152 (396)
T TIGR01547 131 KKFIIFSSNPESPLHWVKKRFI 152 (396)
T ss_pred ccEEEEEcCcCCCccHHHHHHH
Confidence 2247778876543333344443
No 264
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.58 E-value=0.27 Score=45.87 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=17.8
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHh
Q 043110 74 RDVLVNAATGTGKTVAYLAPIINHL 98 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~lp~l~~l 98 (316)
.++++.||+|+|||...- -++..+
T Consensus 56 ~~~lI~G~~GtGKT~l~~-~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVK-KVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHH
Confidence 569999999999998743 344444
No 265
>PRK04195 replication factor C large subunit; Provisional
Probab=95.50 E-value=0.16 Score=48.84 Aligned_cols=45 Identities=24% Similarity=0.271 Sum_probs=28.3
Q ss_pred ccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhC---CCcEEEEcCCCCchHHHH
Q 043110 33 ASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILS---GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~---g~d~li~a~TGsGKT~~~ 90 (316)
...+|+++-.++...+.|..-. ..+.. .+.+++.||+|+|||...
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l-------------~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWI-------------ESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHH-------------HHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 3455667766666666652211 11112 457999999999999764
No 266
>PRK09183 transposase/IS protein; Provisional
Probab=95.50 E-value=0.35 Score=42.57 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=18.1
Q ss_pred HhCCCcEEEEcCCCCchHHHHH
Q 043110 70 ILSGRDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 70 il~g~d~li~a~TGsGKT~~~~ 91 (316)
+-.|.++++.||+|+|||....
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAI 120 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHH
Confidence 3467899999999999997653
No 267
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.46 E-value=0.14 Score=42.62 Aligned_cols=140 Identities=14% Similarity=0.133 Sum_probs=75.0
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHH-HHHHHHHHhhcCCceeEEeeCC--
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLV-YEILQKLLHRFRWIVPGYVMGG-- 148 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~-~~~~~~~~~~~~~~~~~~~~~~-- 148 (316)
....+++..++|.|||.+++--++..+.. |.+++++-=.+--..+- ...++.+ ..+.......+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~---------G~~V~ivQFlKg~~~~GE~~~l~~l----~~v~~~~~g~~~~ 87 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGH---------GKKVGVVQFIKGAWSTGERNLLEFG----GGVEFHVMGTGFT 87 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHC---------CCeEEEEEEecCCCccCHHHHHhcC----CCcEEEECCCCCc
Confidence 55689999999999999987766666644 55577764222110000 1122221 11111111111
Q ss_pred ---CChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcH--HHHHHHHHHhccCcccccC
Q 043110 149 ---GNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG--KEIEEILDILGSRNIASIG 223 (316)
Q Consensus 149 ---~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~--~~i~~i~~~l~~~~~~~~~ 223 (316)
.......... ...+..... .+.-...++||+||+-..++.++- +++..+++..|.
T Consensus 88 ~~~~~~~e~~~~~-----------~~~~~~a~~--~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~------- 147 (191)
T PRK05986 88 WETQDRERDIAAA-----------REGWEEAKR--MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPG------- 147 (191)
T ss_pred ccCCCcHHHHHHH-----------HHHHHHHHH--HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCC-------
Confidence 1111111111 111222211 111246789999999999988753 455555555443
Q ss_pred CCCccccccceEEEEeeecchhHHHHHHH
Q 043110 224 EGNEVSNVKRQNLLLSATLNEKVNHLTKI 252 (316)
Q Consensus 224 ~~~~~~~~~~q~i~~SAT~~~~v~~~~~~ 252 (316)
..-+|+.--..|+.+.+.+..
T Consensus 148 --------~~evVlTGR~~p~~Lie~ADl 168 (191)
T PRK05986 148 --------MQHVVITGRGAPRELIEAADL 168 (191)
T ss_pred --------CCEEEEECCCCCHHHHHhCch
Confidence 566777777788888877664
No 268
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.45 E-value=0.11 Score=44.46 Aligned_cols=53 Identities=26% Similarity=0.336 Sum_probs=32.9
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL 133 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 133 (316)
.|..+++.+++|+|||...+--+.+.+.+. |-.+++++- .+-..++.+.++.+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~--------ge~vlyvs~-ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF--------GEKVLYVSF-EEPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH--------T--EEEEES-SS-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc--------CCcEEEEEe-cCCHHHHHHHHHHc
Confidence 456799999999999987554444444431 222888874 34456666665554
No 269
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.41 E-value=0.3 Score=42.10 Aligned_cols=53 Identities=19% Similarity=0.170 Sum_probs=32.5
Q ss_pred hCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHH
Q 043110 71 LSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL 133 (316)
Q Consensus 71 l~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 133 (316)
..|.-+++.+++|+|||...+--+...+.. +.++++++ +.+-..+..+.+..+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~---------g~~~~yi~-~e~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQN---------GYSVSYVS-TQLTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhC---------CCcEEEEe-CCCCHHHHHHHHHHh
Confidence 356779999999999998743333332222 34478888 434445555555443
No 270
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.39 E-value=0.055 Score=54.86 Aligned_cols=72 Identities=21% Similarity=0.181 Sum_probs=53.0
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHh
Q 043110 57 EAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLH 135 (316)
Q Consensus 57 ~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 135 (316)
..+++-|++++.+ ....++|.|..|||||.+..--+...+....- ..-++|+++-|+.-|..+.+++..+..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i-----~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNV-----APWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCC-----CHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 3589999999975 35679999999999999865555554433111 112499999999999998888877653
No 271
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.28 E-value=0.17 Score=48.12 Aligned_cols=51 Identities=24% Similarity=0.287 Sum_probs=32.0
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHH
Q 043110 73 GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL 133 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 133 (316)
|.-+++.+++|+|||...+--+. .+.. .+.+++|+.- .+-..|+...+..+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~-~~a~--------~g~~vlYvs~-Ees~~qi~~ra~rl 130 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAA-RLAA--------AGGKVLYVSG-EESASQIKLRAERL 130 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-HHHh--------cCCeEEEEEc-cccHHHHHHHHHHc
Confidence 44689999999999986443333 2222 1345888874 44556766665554
No 272
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.25 E-value=0.2 Score=40.73 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=19.3
Q ss_pred CceeEEEEecchhhhcCCcHHHHHHHHHHhc
Q 043110 185 TNLRWIIFDEADRILELGFGKEIEEILDILG 215 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~~~i~~i~~~l~ 215 (316)
...+++||||||.|... ....+.+.++.-+
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp 130 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPP 130 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTT
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCC
Confidence 46899999999998653 3344444554443
No 273
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.25 E-value=0.17 Score=41.42 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=39.3
Q ss_pred CceeEEEEecchhhhcCCcH--HHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHH
Q 043110 185 TNLRWIIFDEADRILELGFG--KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKI 252 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~--~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~ 252 (316)
...++||+||+-..++.++- +.+..+++..|. ..-+|+..-..|+.+.+++..
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~---------------~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPG---------------HQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCC---------------CCEEEEECCCCCHHHHHhCce
Confidence 46889999999998887743 455566655554 667888888888888877663
No 274
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.23 E-value=0.24 Score=49.94 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=14.5
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
++++.||+|+|||...
T Consensus 54 slLL~GPpGtGKTTLA 69 (725)
T PRK13341 54 SLILYGPPGVGKTTLA 69 (725)
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999765
No 275
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.22 E-value=0.24 Score=45.06 Aligned_cols=17 Identities=41% Similarity=0.604 Sum_probs=14.9
Q ss_pred cEEEEcCCCCchHHHHH
Q 043110 75 DVLVNAATGTGKTVAYL 91 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~ 91 (316)
++++.||+|+|||....
T Consensus 38 ~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVR 54 (337)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 69999999999998753
No 276
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.20 E-value=0.17 Score=45.61 Aligned_cols=28 Identities=32% Similarity=0.376 Sum_probs=20.1
Q ss_pred CCCc-EEEEcCCCCchHHHHHHHHHHHhhh
Q 043110 72 SGRD-VLVNAATGTGKTVAYLAPIINHLQS 100 (316)
Q Consensus 72 ~g~d-~li~a~TGsGKT~~~~lp~l~~l~~ 100 (316)
+..+ +++.+|.|+|||.++.. +...+..
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~-lA~~l~~ 50 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALA-LAKELLC 50 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHH-HHHHHhC
Confidence 3456 99999999999988643 4444443
No 277
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.18 E-value=0.22 Score=48.97 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=30.0
Q ss_pred ceeEEEEecchhhhcCC-cHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHH
Q 043110 186 NLRWIIFDEADRILELG-FGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVN 247 (316)
Q Consensus 186 ~l~~lViDEad~l~~~~-~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~ 247 (316)
++++|||||+|.+.... ....+-.+++.+... +.++|+.|-..|..+.
T Consensus 377 ~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~--------------gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 377 EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNA--------------NKQIVLSSDRPPKQLV 425 (617)
T ss_pred cCCEEEEehhccccCCHHHHHHHHHHHHHHHhc--------------CCCEEEecCCChHhhh
Confidence 56899999999886532 344555566655431 4567766655555543
No 278
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.18 E-value=0.074 Score=48.25 Aligned_cols=58 Identities=24% Similarity=0.304 Sum_probs=38.8
Q ss_pred CcHHHHHHHHHH-hCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHH
Q 043110 59 PTKVQAQAIPVI-LSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELC 123 (316)
Q Consensus 59 p~~~Q~~~i~~i-l~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~ 123 (316)
+++.|...+..+ ..+++++++|+||||||... -.++..+.... .+-+++.+-.+.||.
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~------~~~rivtiEd~~El~ 187 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASA------PEDRLVILEDTAEIQ 187 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCC------CCceEEEecCCcccc
Confidence 456777666554 46678999999999999753 44555443211 234578888888874
No 279
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.14 E-value=0.07 Score=48.40 Aligned_cols=58 Identities=29% Similarity=0.381 Sum_probs=38.8
Q ss_pred CcHHHHHHHHH-HhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHH
Q 043110 59 PTKVQAQAIPV-ILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELC 123 (316)
Q Consensus 59 p~~~Q~~~i~~-il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~ 123 (316)
+++.|.+.+.. +..++++++.|+||||||.. +-.++..+... ....+++++-.+.||.
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~------~~~~rivtIEd~~El~ 191 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQ------DPTERVFIIEDTGEIQ 191 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhc------CCCceEEEEcCCCccc
Confidence 45677777754 45678999999999999954 44455443221 1234588888888873
No 280
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.13 E-value=0.12 Score=47.73 Aligned_cols=58 Identities=17% Similarity=0.140 Sum_probs=33.1
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcC
Q 043110 73 GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFR 138 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 138 (316)
++.+.+.||||.|||....=-+....... .....+||-+.|--.+. +++++.++.-++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~------~~~kVaiITtDtYRIGA--~EQLk~Ya~im~ 260 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK------KKKKVAIITTDTYRIGA--VEQLKTYADIMG 260 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc------cCcceEEEEeccchhhH--HHHHHHHHHHhC
Confidence 67799999999999988432222222111 11233677776644332 455566555443
No 281
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.12 E-value=0.12 Score=46.77 Aligned_cols=79 Identities=24% Similarity=0.316 Sum_probs=51.8
Q ss_pred cccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCC-cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCC
Q 043110 32 FASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGR-DVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSG 110 (316)
Q Consensus 32 ~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~-d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~ 110 (316)
++-..|..-.+.-. .| ..|...++-|...+..+..++ |+++++.||||||... +.+...-+ ..
T Consensus 137 lsIRKf~k~~ltl~---dl---i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlL-----Nal~~~i~-----~~ 200 (355)
T COG4962 137 LSIRKFPKIKLTLL---DL---IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLL-----NALSGFID-----SD 200 (355)
T ss_pred ccccccccccccHH---HH---HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHH-----HHHHhcCC-----Cc
Confidence 44445554444332 33 467788999999888877766 9999999999999752 22222111 12
Q ss_pred eeEEEEeCChHHHHHH
Q 043110 111 TFALVLVPTSELCLLV 126 (316)
Q Consensus 111 ~~~lil~Pt~~L~~Q~ 126 (316)
-++|.+--|.||--+.
T Consensus 201 eRvItiEDtaELql~~ 216 (355)
T COG4962 201 ERVITIEDTAELQLAH 216 (355)
T ss_pred ccEEEEeehhhhccCC
Confidence 2599999999886443
No 282
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.11 E-value=0.17 Score=45.15 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
+.++++.||+|+|||.++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 457999999999999875
No 283
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.03 E-value=0.64 Score=41.95 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=18.9
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHhh
Q 043110 73 GRDVLVNAATGTGKTVAYLAPIINHLQ 99 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~lp~l~~l~ 99 (316)
++.+++.|++|+|||.... ++.+.+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l~ 181 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANELA 181 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 4579999999999997643 3444444
No 284
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=95.01 E-value=0.12 Score=52.58 Aligned_cols=90 Identities=14% Similarity=-0.005 Sum_probs=63.8
Q ss_pred HhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEE
Q 043110 158 LRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLL 237 (316)
Q Consensus 158 l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~ 237 (316)
++....|+++||..|..-+-. +.+.++++..+|+||||++.+..-...+..+++.-.+ ..-+.+
T Consensus 4 ly~~ggi~~~T~rIl~~DlL~-~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~---------------~gfIka 67 (814)
T TIGR00596 4 VYLEGGIFSITSRILVVDLLT-GIIPPELITGILVLRADRIIESSQEAFILRLYRQKNK---------------TGFIKA 67 (814)
T ss_pred HhhcCCEEEEechhhHhHHhc-CCCCHHHccEEEEeecccccccccHHHHHHHHHHhCC---------------CcceEE
Confidence 344568999999988654543 5677789999999999999887666777777766554 667899
Q ss_pred Eeeecch------hHHHHHHHhcCCCEEEEcC
Q 043110 238 LSATLNE------KVNHLTKISLETPVLIGLD 263 (316)
Q Consensus 238 ~SAT~~~------~v~~~~~~~l~~p~~i~~~ 263 (316)
|||.... .+...++...-.-+.+.-.
T Consensus 68 fSdsP~~~~~g~~~l~~vmk~L~i~~v~l~pr 99 (814)
T TIGR00596 68 FSDNPEAFTMGFSPLETKMRNLFLRHVYLWPR 99 (814)
T ss_pred ecCCCcccccchHHHHHHHHHhCcCeEEEeCC
Confidence 9999764 3555555443344555433
No 285
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.96 E-value=0.075 Score=52.86 Aligned_cols=115 Identities=22% Similarity=0.204 Sum_probs=66.1
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHH
Q 043110 75 DVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKE 154 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (316)
-.|+.-.-|-|||..-+..++.+-...........+...||+||+ ++..|+...+.+.... ....+.+.+| ...+
T Consensus 154 ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~~-~~l~v~v~~g---r~kd 228 (674)
T KOG1001|consen 154 GGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEE-DKLSIYVYHG---RTKD 228 (674)
T ss_pred cceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCCc-cceEEEEecc---cccc
Confidence 368888899999998644333221111100011234558899987 5567777777444332 3344444444 1112
Q ss_pred HHHHhcCCcEEEeCcHHHHH-HHhcCCccccCceeEEEEecchhhhcC
Q 043110 155 KARLRKGISILVATPGHLLD-HLKHTSSFLHTNLRWIIFDEADRILEL 201 (316)
Q Consensus 155 ~~~l~~~~~IlV~Tp~~l~~-~l~~~~~~~~~~l~~lViDEad~l~~~ 201 (316)
. ....+++||++|++.+.. .+. .-..-.+|+||||.+-..
T Consensus 229 ~-~el~~~dVVltTy~il~~~~l~------~i~w~Riildea~~ikn~ 269 (674)
T KOG1001|consen 229 K-SELNSYDVVLTTYDILKNSPLV------KIKWLRIVLDEAHTIKNK 269 (674)
T ss_pred c-chhcCCceEEeeHHHhhccccc------ceeEEEEEeccccccCCc
Confidence 2 223457899999988863 221 123457899999987654
No 286
>PF13173 AAA_14: AAA domain
Probab=94.95 E-value=0.55 Score=36.30 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=19.6
Q ss_pred ceeEEEEecchhhhcCCcHHHHHHHHHHh
Q 043110 186 NLRWIIFDEADRILELGFGKEIEEILDIL 214 (316)
Q Consensus 186 ~l~~lViDEad~l~~~~~~~~i~~i~~~l 214 (316)
.-.+++|||+|.+-+ +...+..+...-
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~ 87 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG 87 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc
Confidence 456899999999854 666666666643
No 287
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.92 E-value=0.79 Score=40.62 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCchHHHHHH
Q 043110 74 RDVLVNAATGTGKTVAYLA 92 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~l 92 (316)
+-+++.+++|+|||....-
T Consensus 73 ~vi~l~G~~G~GKTTt~ak 91 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAK 91 (272)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 3477889999999987543
No 288
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=94.90 E-value=0.098 Score=51.22 Aligned_cols=126 Identities=18% Similarity=0.194 Sum_probs=73.6
Q ss_pred CCcHHHHHHHHHHhCC--CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHH-HHHHHHH
Q 043110 58 APTKVQAQAIPVILSG--RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVY-EILQKLL 134 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~-~~~~~~~ 134 (316)
..+|+|.+.+..+... +.+++..++-+|||.+.+. ++-......+. -+|++.||.++|.... ..+..+.
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n-~~g~~i~~~P~-------~~l~v~Pt~~~a~~~~~~rl~Pmi 87 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLN-WIGYSIDQDPG-------PMLYVQPTDDAAKDFSKERLDPMI 87 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHh-hceEEEEeCCC-------CEEEEEEcHHHHHHHHHHHHHHHH
Confidence 4689999998887654 4699999999999995433 33333333322 2999999999999877 4676666
Q ss_pred hhcCCceeEEeeC----CCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhc
Q 043110 135 HRFRWIVPGYVMG----GGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILE 200 (316)
Q Consensus 135 ~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~ 200 (316)
...+.+.. .+.. ..........+. +..+.++.-+ ....+.-..++++++||.|..-+
T Consensus 88 ~~sp~l~~-~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~-------S~~~l~s~~~r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 88 RASPVLRR-KLSPSKSRDSGNTILYKRFP-GGFLYLVGAN-------SPSNLRSRPARYLLLDEVDRYPD 148 (557)
T ss_pred HhCHHHHH-HhCchhhcccCCchhheecC-CCEEEEEeCC-------CCcccccCCcCEEEEechhhccc
Confidence 55432221 1111 011111111122 2334333321 11122224688999999999853
No 289
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.89 E-value=0.76 Score=40.64 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCCchHHHHHHH
Q 043110 73 GRDVLVNAATGTGKTVAYLAP 93 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~lp 93 (316)
+..+.+.+++|+|||..+..-
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l 95 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKM 95 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHH
Confidence 356899999999999876543
No 290
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.87 E-value=0.4 Score=44.47 Aligned_cols=51 Identities=22% Similarity=0.270 Sum_probs=31.3
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHH
Q 043110 73 GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL 133 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 133 (316)
|.-+++.+++|+|||...+- +...+.. .+.+++|+.-. +-..|+...+..+
T Consensus 82 GslvLI~G~pG~GKStLllq-~a~~~a~--------~g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQ-VAARLAK--------RGGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHH-HHHHHHh--------cCCeEEEEECC-cCHHHHHHHHHHc
Confidence 45689999999999986543 2233322 12348888754 3455665555444
No 291
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.86 E-value=0.077 Score=43.89 Aligned_cols=46 Identities=28% Similarity=0.345 Sum_probs=27.2
Q ss_pred hCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHH
Q 043110 71 LSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLV 126 (316)
Q Consensus 71 l~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~ 126 (316)
-+++++++.|++|+|||..+.. +...+... |..++++ +..+|...+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~a-i~~~~~~~--------g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVA-IANEAIRK--------GYSVLFI-TASDLLDEL 90 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHH-HHHHHHHT--------T--EEEE-EHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHH-HHHHhccC--------CcceeEe-ecCceeccc
Confidence 3677899999999999987543 44444431 3335554 455665443
No 292
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.85 E-value=0.4 Score=42.73 Aligned_cols=54 Identities=22% Similarity=0.262 Sum_probs=30.5
Q ss_pred ccCCCCHHHHHHHHHHcC-CCCCcHHHHHHHHHH---h-----------CCCcEEEEcCCCCchHHHHH
Q 043110 38 SSLGLDSTLCDQLRERLG-FEAPTKVQAQAIPVI---L-----------SGRDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 38 ~~~~l~~~l~~~l~~~~g-~~~p~~~Q~~~i~~i---l-----------~g~d~li~a~TGsGKT~~~~ 91 (316)
.+.++++++.+.|.+.+. ...+...+......+ + .++.+++.+|||+|||....
T Consensus 144 ~~~gv~~~la~~L~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 144 LRAGVSPELARELLEKLPERADAEDAWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLA 212 (282)
T ss_pred HHCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHH
Confidence 345777777777655442 122222222222221 1 23468899999999998754
No 293
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=94.83 E-value=0.14 Score=51.47 Aligned_cols=117 Identities=21% Similarity=0.203 Sum_probs=71.1
Q ss_pred HHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHH-HHHhhcCCceeEEe
Q 043110 67 IPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQ-KLLHRFRWIVPGYV 145 (316)
Q Consensus 67 i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~-~~~~~~~~~~~~~~ 145 (316)
+.++....-+++.+.||+|||.-+.--+++.+.....- ...-+.+--|+|-.+.-+.+.+. +.+...... ++
T Consensus 387 ~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g----~~~na~v~qprrisaisiaerva~er~e~~g~t-vg-- 459 (1282)
T KOG0921|consen 387 LQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNG----ASFNAVVSQPRRISAISLAERVANERGEEVGET-CG-- 459 (1282)
T ss_pred HHHHhcCceeeEeecccccchhHHHHHHHHHHhhcccc----ccccceeccccccchHHHHHHHHHhhHHhhccc-cc--
Confidence 34444556689999999999998877777777663321 12236777799888877766443 322222111 11
Q ss_pred eCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchh
Q 043110 146 MGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADR 197 (316)
Q Consensus 146 ~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~ 197 (316)
.+..-...--..---|+.||-+-++..+.+. +..+.++++||.|.
T Consensus 460 ---y~vRf~Sa~prpyg~i~fctvgvllr~~e~g----lrg~sh~i~deihe 504 (1282)
T KOG0921|consen 460 ---YNVRFDSATPRPYGSIMFCTVGVLLRMMENG----LRGISHVIIDEIHE 504 (1282)
T ss_pred ---ccccccccccccccceeeeccchhhhhhhhc----ccccccccchhhhh
Confidence 1110000000001248999999998888752 24678999999996
No 294
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=94.81 E-value=0.34 Score=45.41 Aligned_cols=46 Identities=26% Similarity=0.506 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCCCCcHHHH--------HHHHHHhCCCcEEEEcCCCCchHHHHH
Q 043110 45 TLCDQLRERLGFEAPTKVQA--------QAIPVILSGRDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 45 ~l~~~l~~~~g~~~p~~~Q~--------~~i~~il~g~d~li~a~TGsGKT~~~~ 91 (316)
+.+..|...+||+ |..+-. .++|.+-.+.|++..+|+|+|||-.|.
T Consensus 174 EWid~LlrSiG~~-P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 174 EWIDVLIRSIGYE-PEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HHHHHHHHhcCCC-cccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHH
Confidence 4456666778887 432211 123556678899999999999996654
No 295
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.78 E-value=0.64 Score=40.74 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=22.7
Q ss_pred CcHHHHHHHHHHh----CCC-cEEEEcCCCCchHHHHH
Q 043110 59 PTKVQAQAIPVIL----SGR-DVLVNAATGTGKTVAYL 91 (316)
Q Consensus 59 p~~~Q~~~i~~il----~g~-d~li~a~TGsGKT~~~~ 91 (316)
+++.+.+++..+. .+. .+++.|++|+|||....
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4556666665543 333 58899999999997643
No 296
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.75 E-value=1.4 Score=42.69 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=15.7
Q ss_pred cEEEEcCCCCchHHHHHH
Q 043110 75 DVLVNAATGTGKTVAYLA 92 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~l 92 (316)
.+++.||.|+|||.++.+
T Consensus 45 a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARI 62 (507)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 589999999999988654
No 297
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.71 E-value=0.51 Score=40.41 Aligned_cols=52 Identities=23% Similarity=0.223 Sum_probs=31.1
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL 133 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 133 (316)
.|..+++.+++|+|||....--+.+.+.. +-.++++.- .+...++.+.++.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~---------g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD---------GDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc---------CCeEEEEEc-cCCHHHHHHHHHHh
Confidence 45679999999999997654333333322 223677764 34445555554443
No 298
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.67 E-value=0.4 Score=48.69 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
..++++.||+|+|||...
T Consensus 207 ~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 347999999999999875
No 299
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.63 E-value=0.41 Score=45.68 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=14.9
Q ss_pred EEEEcCCCCchHHHHHH
Q 043110 76 VLVNAATGTGKTVAYLA 92 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~l 92 (316)
+++.||.|+|||.++.+
T Consensus 43 ~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 43 YIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 79999999999988654
No 300
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.61 E-value=1.5 Score=43.07 Aligned_cols=19 Identities=37% Similarity=0.319 Sum_probs=15.5
Q ss_pred cEEEEcCCCCchHHHHHHH
Q 043110 75 DVLVNAATGTGKTVAYLAP 93 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~lp 93 (316)
-.+++||.|+|||.++-+-
T Consensus 40 ayLf~Gp~GtGKTt~Ak~l 58 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIF 58 (559)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3788999999999886543
No 301
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.60 E-value=0.86 Score=43.21 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=15.0
Q ss_pred cEEEEcCCCCchHHHHHH
Q 043110 75 DVLVNAATGTGKTVAYLA 92 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~l 92 (316)
.+++.+++|+|||.+..-
T Consensus 97 vI~lvG~~GsGKTTtaak 114 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAK 114 (437)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 478999999999987643
No 302
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.56 E-value=0.24 Score=45.67 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.4
Q ss_pred cEEEEcCCCCchHHHHHH
Q 043110 75 DVLVNAATGTGKTVAYLA 92 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~l 92 (316)
+.|+.+|.|+|||..+-+
T Consensus 50 SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 50 SMILWGPPGTGKTTLARL 67 (436)
T ss_pred eeEEECCCCCCHHHHHHH
Confidence 699999999999987543
No 303
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.52 E-value=0.29 Score=45.16 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=18.4
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHhh
Q 043110 74 RDVLVNAATGTGKTVAYLAPIINHLQ 99 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~lp~l~~l~ 99 (316)
.++++.||+|+|||... -.++..+.
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHHH
Confidence 57999999999999764 33444443
No 304
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.27 Score=44.80 Aligned_cols=72 Identities=18% Similarity=0.155 Sum_probs=43.7
Q ss_pred eEEEEecchhhhcCC--cH-HHHHHHHHHhccCcccccCCCCcc-ccccceEEEEeeec-chhHHHHHHHhcCCCEEEEc
Q 043110 188 RWIIFDEADRILELG--FG-KEIEEILDILGSRNIASIGEGNEV-SNVKRQNLLLSATL-NEKVNHLTKISLETPVLIGL 262 (316)
Q Consensus 188 ~~lViDEad~l~~~~--~~-~~i~~i~~~l~~~~~~~~~~~~~~-~~~~~q~i~~SAT~-~~~v~~~~~~~l~~p~~i~~ 262 (316)
..+-|||+|.++..- .. +....+...+- ..|... ++...|++++.||= |.+++..+-..|..-.+|.+
T Consensus 188 ~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM-------~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~l 260 (386)
T KOG0737|consen 188 SIIFIDEVDSFLGQRRSTDHEATAMMKNEFM-------ALWDGLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGL 260 (386)
T ss_pred ceeehhhHHHHHhhcccchHHHHHHHHHHHH-------HHhccccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCC
Confidence 578899999988531 11 11222222211 123333 34456899999997 77788877777766777777
Q ss_pred CCCC
Q 043110 263 DEKK 266 (316)
Q Consensus 263 ~~~~ 266 (316)
....
T Consensus 261 P~~~ 264 (386)
T KOG0737|consen 261 PDAE 264 (386)
T ss_pred Cchh
Confidence 6643
No 305
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.51 E-value=0.48 Score=45.37 Aligned_cols=129 Identities=15% Similarity=0.122 Sum_probs=61.3
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChH
Q 043110 73 GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRS 152 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (316)
|+-+.+.||||+|||.+...-+........ ....+++-+-+.-.. ..+.++.++...+. ............
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G------~~kV~LI~~Dt~Rig--A~EQLr~~AeilGV-pv~~~~~~~Dl~ 326 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHG------ASKVALLTTDSYRIG--GHEQLRIYGKILGV-PVHAVKDAADLR 326 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcC------CCeEEEEeCCccchh--HHHHHHHHHHHhCC-CeeccCCchhHH
Confidence 445889999999999986443322222211 011233333332222 14455555554432 222222233333
Q ss_pred HHHHHHhcCCcEEEeCcHHHHHH------HhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhcc
Q 043110 153 KEKARLRKGISILVATPGHLLDH------LKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216 (316)
Q Consensus 153 ~~~~~l~~~~~IlV~Tp~~l~~~------l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~ 216 (316)
.....+...-.++|-|+|+.... +..........=.+||+|..-. ...+..+...+..
T Consensus 327 ~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~------~~~l~~i~~~f~~ 390 (484)
T PRK06995 327 LALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH------GDTLNEVVQAYRG 390 (484)
T ss_pred HHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc------HHHHHHHHHHhcc
Confidence 34444444456899999954321 1110111101116788886532 2445556555543
No 306
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.50 E-value=0.4 Score=46.46 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=14.7
Q ss_pred EEEEcCCCCchHHHHHH
Q 043110 76 VLVNAATGTGKTVAYLA 92 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~l 92 (316)
.++.||.|+|||.++.+
T Consensus 41 ~Lf~Gp~G~GKTt~A~~ 57 (509)
T PRK14958 41 YLFTGTRGVGKTTISRI 57 (509)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 69999999999987654
No 307
>PF05729 NACHT: NACHT domain
Probab=94.47 E-value=1.4 Score=35.05 Aligned_cols=24 Identities=17% Similarity=0.426 Sum_probs=17.2
Q ss_pred EEEEcCCCCchHHHHHHHHHHHhhh
Q 043110 76 VLVNAATGTGKTVAYLAPIINHLQS 100 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~lp~l~~l~~ 100 (316)
+++.|+.|+|||... --++..+..
T Consensus 3 l~I~G~~G~GKStll-~~~~~~~~~ 26 (166)
T PF05729_consen 3 LWISGEPGSGKSTLL-RKLAQQLAE 26 (166)
T ss_pred EEEECCCCCChHHHH-HHHHHHHHh
Confidence 689999999999864 334444444
No 308
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.44 E-value=0.27 Score=49.31 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=14.5
Q ss_pred EEEEcCCCCchHHHHHH
Q 043110 76 VLVNAATGTGKTVAYLA 92 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~l 92 (316)
+++.++.|+|||.+..+
T Consensus 41 yLFtGPpGvGKTTlAri 57 (830)
T PRK07003 41 YLFTGTRGVGKTTLSRI 57 (830)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999987544
No 309
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=0.19 Score=47.90 Aligned_cols=56 Identities=27% Similarity=0.436 Sum_probs=35.1
Q ss_pred cccCCcccCC---CCHHHHHHHHHHcCCCC--CcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 043110 32 FASCCFSSLG---LDSTLCDQLRERLGFEA--PTKVQAQAIPVILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 32 ~~~~~f~~~~---l~~~l~~~l~~~~g~~~--p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~ 90 (316)
-..++|+++| |+.+.-+.+++.|-..- |--+-+--+++ -+-+++.+|+|+|||+.+
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~H---VKGiLLyGPPGTGKTLiA 273 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKH---VKGILLYGPPGTGKTLIA 273 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccc---eeeEEEECCCCCChhHHH
Confidence 3457889985 88888777754432221 22222222222 256899999999999875
No 310
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.33 E-value=0.46 Score=48.65 Aligned_cols=19 Identities=26% Similarity=0.260 Sum_probs=16.0
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 043110 76 VLVNAATGTGKTVAYLAPI 94 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~lp~ 94 (316)
+|+.+|.|+|||.+..+-+
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lA 58 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILA 58 (824)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7999999999999876533
No 311
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.30 E-value=0.29 Score=43.98 Aligned_cols=58 Identities=22% Similarity=0.347 Sum_probs=37.5
Q ss_pred CcHHHHHHHHH-HhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHH
Q 043110 59 PTKVQAQAIPV-ILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELC 123 (316)
Q Consensus 59 p~~~Q~~~i~~-il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~ 123 (316)
+++-|...+.. +..+++++++++||||||... -.++..+... ....+++++-.+.|+.
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~------~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKN------DPTDRVVIIEDTRELQ 175 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhcc------CCCceEEEECCchhhc
Confidence 44555555544 446679999999999999753 4444444331 1134588888888874
No 312
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.30 E-value=0.69 Score=42.10 Aligned_cols=39 Identities=21% Similarity=0.099 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHhC--CC---cEEEEcCCCCchHHHHHHHHHHHhh
Q 043110 60 TKVQAQAIPVILS--GR---DVLVNAATGTGKTVAYLAPIINHLQ 99 (316)
Q Consensus 60 ~~~Q~~~i~~il~--g~---d~li~a~TGsGKT~~~~lp~l~~l~ 99 (316)
+|||+..|..+.. |+ -.++.||.|.|||..+.. +...+.
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~-~a~~ll 46 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARF-AAQALL 46 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHH-HHHHHc
Confidence 6888888877763 33 388999999999987644 333443
No 313
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.28 E-value=0.64 Score=40.86 Aligned_cols=38 Identities=13% Similarity=0.153 Sum_probs=25.2
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeC
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP 118 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~P 118 (316)
.|.-+++.+++|+|||...+--+.+.+.. |-+++|++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~---------Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR---------GNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC---------CCcEEEEEe
Confidence 45568999999999998754433333322 334788773
No 314
>PF14516 AAA_35: AAA-like domain
Probab=94.26 E-value=0.18 Score=46.06 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhC-CCcEEEEcCCCCchHHHHHHHHHHHhhh
Q 043110 61 KVQAQAIPVILS-GRDVLVNAATGTGKTVAYLAPIINHLQS 100 (316)
Q Consensus 61 ~~Q~~~i~~il~-g~d~li~a~TGsGKT~~~~lp~l~~l~~ 100 (316)
|+.++++..+.+ |.-+.+.||-.+|||.. +.-+++.+..
T Consensus 18 ~~e~~~~~~i~~~G~~~~I~apRq~GKTSl-l~~l~~~l~~ 57 (331)
T PF14516_consen 18 PAEQECYQEIVQPGSYIRIKAPRQMGKTSL-LLRLLERLQQ 57 (331)
T ss_pred HHHHHHHHHHhcCCCEEEEECcccCCHHHH-HHHHHHHHHH
Confidence 489999999887 88999999999999975 4455555544
No 315
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.24 E-value=0.087 Score=48.28 Aligned_cols=45 Identities=22% Similarity=0.327 Sum_probs=30.6
Q ss_pred HHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHH
Q 043110 69 VILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELC 123 (316)
Q Consensus 69 ~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~ 123 (316)
.+..++++++.|+||||||... -.++..+.. ..+++.+-.+.||.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTll-~aLl~~i~~---------~~rivtiEd~~El~ 202 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTMS-KTLISAIPP---------QERLITIEDTLELV 202 (344)
T ss_pred HHHcCCeEEEECCCCccHHHHH-HHHHcccCC---------CCCEEEECCCcccc
Confidence 3447889999999999999753 334433321 23477788888774
No 316
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.23 E-value=0.28 Score=48.55 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=15.2
Q ss_pred cEEEEcCCCCchHHHHHH
Q 043110 75 DVLVNAATGTGKTVAYLA 92 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~l 92 (316)
-+++.||.|+|||.++.+
T Consensus 39 AyLF~GPpGvGKTTlAri 56 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARI 56 (702)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 369999999999987654
No 317
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.14 E-value=0.64 Score=42.58 Aligned_cols=41 Identities=17% Similarity=0.142 Sum_probs=28.6
Q ss_pred CcHHHHHHHHHHhC--CC---cEEEEcCCCCchHHHHHHHHHHHhhh
Q 043110 59 PTKVQAQAIPVILS--GR---DVLVNAATGTGKTVAYLAPIINHLQS 100 (316)
Q Consensus 59 p~~~Q~~~i~~il~--g~---d~li~a~TGsGKT~~~~lp~l~~l~~ 100 (316)
.+|||...+..+.. ++ -.++.||.|.||+..+.. +.+.+..
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~-~A~~LlC 47 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQH-LAQGLLC 47 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHH-HHHHHcC
Confidence 36788888877663 33 478999999999987643 4444444
No 318
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=94.13 E-value=0.42 Score=48.67 Aligned_cols=122 Identities=12% Similarity=0.149 Sum_probs=61.9
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCc-ee-EEeeCCCC
Q 043110 73 GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWI-VP-GYVMGGGN 150 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~-~~-~~~~~~~~ 150 (316)
|--+|+.-..|-|||+-. +..++.++.... ..-.+||||+|..- +..+.+.+.+|...+... .. ....+...
T Consensus 696 GsGcILAHcMGLGKTlQV-vtflhTvL~c~k----lg~ktaLvV~PlNt-~~NW~~EFekWm~~~e~~~~leV~eL~~vk 769 (1567)
T KOG1015|consen 696 GSGCILAHCMGLGKTLQV-VTFLHTVLLCDK----LGFKTALVVCPLNT-ALNWMNEFEKWMEGLEDDEKLEVSELATVK 769 (1567)
T ss_pred CcchHHHHhhcccceehh-hHHHHHHHHhhc----cCCceEEEEcchHH-HHHHHHHHHHhcccccccccceeehhhhcc
Confidence 345788888999999864 333443332211 12335999999865 455666677766532111 11 11222222
Q ss_pred h-HHHHHHH---hcCCcEEEeCcHHHHHHHhcCC------------ccccCceeEEEEecchhhhc
Q 043110 151 R-SKEKARL---RKGISILVATPGHLLDHLKHTS------------SFLHTNLRWIIFDEADRILE 200 (316)
Q Consensus 151 ~-~~~~~~l---~~~~~IlV~Tp~~l~~~l~~~~------------~~~~~~l~~lViDEad~l~~ 200 (316)
. ......| .+.-.|.|.-...+-.+..... .+.-..-+++|.||+|.|-.
T Consensus 770 r~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKN 835 (1567)
T KOG1015|consen 770 RPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKN 835 (1567)
T ss_pred ChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhcc
Confidence 2 2221122 1222455555554433322111 11112457999999998754
No 319
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.91 Score=41.89 Aligned_cols=73 Identities=19% Similarity=0.220 Sum_probs=40.9
Q ss_pred eeEEEEecchhhhcC-CcH-------HHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCE
Q 043110 187 LRWIIFDEADRILEL-GFG-------KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPV 258 (316)
Q Consensus 187 l~~lViDEad~l~~~-~~~-------~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~ 258 (316)
-..|.|||+|.|... |-. ..=..++-.+.. .....-+.+.-+|+.+-.+|=++.+..+..+..-+
T Consensus 305 PStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG-------~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRI 377 (491)
T KOG0738|consen 305 PSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDG-------VQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRI 377 (491)
T ss_pred CceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhc-------cccccccceeEEEEeccCCCcchHHHHHHHHhhhe
Confidence 357899999998754 211 111223333321 11111112333344444478889888888888888
Q ss_pred EEEcCCCC
Q 043110 259 LIGLDEKK 266 (316)
Q Consensus 259 ~i~~~~~~ 266 (316)
+|-+.+.+
T Consensus 378 yIPLP~~~ 385 (491)
T KOG0738|consen 378 YIPLPDAE 385 (491)
T ss_pred eeeCCCHH
Confidence 88776654
No 320
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.13 E-value=1.7 Score=37.41 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=31.5
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHH
Q 043110 73 GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL 133 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 133 (316)
|.-+++.+++|+|||....--+...+.+ +-+++|+.-.. -..++.+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~---------g~~~~y~~~e~-~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ---------GKKVYVITTEN-TSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC---------CCEEEEEEcCC-CHHHHHHHHHHC
Confidence 4568999999999998754433333322 44477777543 334555555554
No 321
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.09 E-value=1 Score=38.82 Aligned_cols=39 Identities=23% Similarity=0.229 Sum_probs=25.3
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeC
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVP 118 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~P 118 (316)
.|.-+++.|++|+|||...+--+.+.... .+..+++++.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~--------~g~~vly~s~ 50 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK--------QGKPVLFFSL 50 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCceEEEeC
Confidence 55678999999999997644333333332 1334888873
No 322
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.06 E-value=0.1 Score=49.58 Aligned_cols=40 Identities=28% Similarity=0.449 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHhCCCc--EEEEcCCCCchHHHHHHHHHHHhhh
Q 043110 60 TKVQAQAIPVILSGRD--VLVNAATGTGKTVAYLAPIINHLQS 100 (316)
Q Consensus 60 ~~~Q~~~i~~il~g~d--~li~a~TGsGKT~~~~lp~l~~l~~ 100 (316)
++.|...+..+++... +++.+|||||||.. +..+++.+..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 5677777777776655 89999999999986 4556666654
No 323
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.04 E-value=0.46 Score=47.95 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCchHHHHHH
Q 043110 73 GRDVLVNAATGTGKTVAYLA 92 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~l 92 (316)
|+-+.+.+|||+|||.+...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaK 204 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAK 204 (767)
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 34578999999999988643
No 324
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=94.02 E-value=0.69 Score=38.08 Aligned_cols=52 Identities=17% Similarity=0.285 Sum_probs=38.1
Q ss_pred CceeEEEEecchhhhcCCcH--HHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHH
Q 043110 185 TNLRWIIFDEADRILELGFG--KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTK 251 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~--~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~ 251 (316)
...+++|+||+-..++.|+- +++..+++..|. ..-+|+.--..|+.+.+.+.
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~---------------~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPS---------------HVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCC---------------CCEEEEECCCCCHHHHHhCC
Confidence 46789999999999988754 455556655544 56777777778887777655
No 325
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.01 E-value=0.86 Score=45.05 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=15.6
Q ss_pred cEEEEcCCCCchHHHHHH
Q 043110 75 DVLVNAATGTGKTVAYLA 92 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~l 92 (316)
.+++.||.|+|||..+.+
T Consensus 48 a~L~~Gp~GvGKTt~Ar~ 65 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARI 65 (598)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 489999999999988654
No 326
>PRK10867 signal recognition particle protein; Provisional
Probab=94.01 E-value=0.97 Score=42.78 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=14.4
Q ss_pred EEEEcCCCCchHHHHHH
Q 043110 76 VLVNAATGTGKTVAYLA 92 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~l 92 (316)
+++.+++|+|||.+..-
T Consensus 103 I~~vG~~GsGKTTtaak 119 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGK 119 (433)
T ss_pred EEEECCCCCcHHHHHHH
Confidence 78999999999987543
No 327
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.00 E-value=0.56 Score=46.80 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.4
Q ss_pred cEEEEcCCCCchHHHHHH
Q 043110 75 DVLVNAATGTGKTVAYLA 92 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~l 92 (316)
.+++.||.|+|||....+
T Consensus 40 a~Lf~GP~GvGKTTlAri 57 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARI 57 (709)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 479999999999987644
No 328
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.19 Score=46.47 Aligned_cols=17 Identities=41% Similarity=0.630 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCchHHHH
Q 043110 74 RDVLVNAATGTGKTVAY 90 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~ 90 (316)
+|++..+|+|+|||+++
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 58999999999999874
No 329
>PRK05973 replicative DNA helicase; Provisional
Probab=93.89 E-value=0.6 Score=40.43 Aligned_cols=55 Identities=25% Similarity=0.267 Sum_probs=34.9
Q ss_pred HHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHH
Q 043110 69 VILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL 133 (316)
Q Consensus 69 ~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 133 (316)
-+..|.-+++.|++|+|||...+--+.+.... |-.++|++-- +-..|+.+.+..+
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---------Ge~vlyfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKS---------GRTGVFFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc---------CCeEEEEEEe-CCHHHHHHHHHHc
Confidence 34456679999999999998755444443322 3347777633 3356667666655
No 330
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.89 E-value=1.2 Score=44.25 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=14.7
Q ss_pred EEEEcCCCCchHHHHHH
Q 043110 76 VLVNAATGTGKTVAYLA 92 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~l 92 (316)
+++.||.|+|||....+
T Consensus 41 yLf~Gp~GvGKTTlAr~ 57 (647)
T PRK07994 41 YLFSGTRGVGKTTIARL 57 (647)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 58999999999987654
No 331
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.81 E-value=1.1 Score=42.24 Aligned_cols=85 Identities=15% Similarity=0.165 Sum_probs=41.7
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEe--CChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChH
Q 043110 75 DVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV--PTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRS 152 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~--Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (316)
-+.+.+++|+|||....--+. .+.. .|.++++++ |.|.-+ .++++.++...+ +.......+.+..
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~-~l~~--------~G~kV~lV~~D~~R~aA---~eQLk~~a~~~~-vp~~~~~~~~dp~ 168 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAY-YYQR--------KGFKPCLVCADTFRAGA---FDQLKQNATKAR-IPFYGSYTESDPV 168 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH--------CCCCEEEEcCcccchhH---HHHHHHHhhccC-CeEEeecCCCCHH
Confidence 378999999999976532222 2322 133355554 335433 334444444332 2222222233321
Q ss_pred ----HHHHHHh-cCCc-EEEeCcHHH
Q 043110 153 ----KEKARLR-KGIS-ILVATPGHL 172 (316)
Q Consensus 153 ----~~~~~l~-~~~~-IlV~Tp~~l 172 (316)
.....+. .+++ |+|=|||++
T Consensus 169 ~i~~~~l~~~~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 169 KIASEGVEKFKKENFDIIIVDTSGRH 194 (429)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 1122222 2455 789999976
No 332
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.76 E-value=1 Score=42.55 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.0
Q ss_pred cEEEEcCCCCchHHHHHH
Q 043110 75 DVLVNAATGTGKTVAYLA 92 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~l 92 (316)
-+++.+++|+|||....-
T Consensus 101 vi~~vG~~GsGKTTtaak 118 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGK 118 (428)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 388999999999987543
No 333
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.74 E-value=0.89 Score=43.73 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=15.6
Q ss_pred cEEEEcCCCCchHHHHHH
Q 043110 75 DVLVNAATGTGKTVAYLA 92 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~l 92 (316)
.++++||.|+|||.++.+
T Consensus 37 a~Lf~Gp~G~GKTT~Ari 54 (491)
T PRK14964 37 SILLVGASGVGKTTCARI 54 (491)
T ss_pred eEEEECCCCccHHHHHHH
Confidence 589999999999987654
No 334
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.71 E-value=0.28 Score=44.36 Aligned_cols=76 Identities=20% Similarity=0.258 Sum_probs=47.8
Q ss_pred cccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHH-HHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCC
Q 043110 32 FASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQA-IPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSG 110 (316)
Q Consensus 32 ~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~-i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~ 110 (316)
+....|..-+++.. .| . ++..+++.|..- |-.+-.+++++++++||||||.. +.+++..+-. .
T Consensus 107 ~~IRk~~~~~~t~~---~l-~--~~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~---------~ 170 (312)
T COG0630 107 FTIRKFSDEPITPE---DL-I--EYGTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPP---------E 170 (312)
T ss_pred EEEEcCCCCCCCHH---HH-h--hcCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCc---------h
Confidence 34445555555544 33 1 244567777544 45555788999999999999964 4555554432 3
Q ss_pred eeEEEEeCChHHH
Q 043110 111 TFALVLVPTSELC 123 (316)
Q Consensus 111 ~~~lil~Pt~~L~ 123 (316)
.+.+.+--|.|+.
T Consensus 171 ~rivtIEdt~E~~ 183 (312)
T COG0630 171 ERIVTIEDTPELK 183 (312)
T ss_pred hcEEEEecccccc
Confidence 3478888887764
No 335
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.71 E-value=0.72 Score=42.68 Aligned_cols=17 Identities=29% Similarity=0.345 Sum_probs=14.5
Q ss_pred EEEEcCCCCchHHHHHH
Q 043110 76 VLVNAATGTGKTVAYLA 92 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~l 92 (316)
+++.||.|+|||..+..
T Consensus 41 ~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 41 WLLSGTRGVGKTTIARL 57 (363)
T ss_pred EEEecCCCCCHHHHHHH
Confidence 68999999999987644
No 336
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.70 E-value=0.22 Score=51.92 Aligned_cols=157 Identities=18% Similarity=0.189 Sum_probs=89.2
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCC---------CCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCcee
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPR---------IDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVP 142 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~---------~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~ 142 (316)
.|+++++.-..|.|||.+-+...+...-...+. .......-.|||+|. ++..|+.+.+..-... ...
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~---~lK 448 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISS---LLK 448 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccc---cce
Confidence 456789999999999998765544432111100 000112338999998 5567888888776543 222
Q ss_pred EEeeCCCChHH--HHHHHhcCCcEEEeCcHHHHHHHhcCC-------------cc----ccCcee--EEEEecchhhhcC
Q 043110 143 GYVMGGGNRSK--EKARLRKGISILVATPGHLLDHLKHTS-------------SF----LHTNLR--WIIFDEADRILEL 201 (316)
Q Consensus 143 ~~~~~~~~~~~--~~~~l~~~~~IlV~Tp~~l~~~l~~~~-------------~~----~~~~l~--~lViDEad~l~~~ 201 (316)
.+.+-|..... .... ..++|||++|...|..=+.... .. .+..+. -+++|||+.+-.
T Consensus 449 v~~Y~Girk~~~~~~~e-l~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves- 526 (1394)
T KOG0298|consen 449 VLLYFGIRKTFWLSPFE-LLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES- 526 (1394)
T ss_pred EEEEechhhhcccCchh-hhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc-
Confidence 33443322111 1111 2358999999998865443220 00 111122 379999997654
Q ss_pred CcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHH
Q 043110 202 GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTK 251 (316)
Q Consensus 202 ~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~ 251 (316)
-......++.+|+. ...=++|.|.=..+.++-.
T Consensus 527 -ssS~~a~M~~rL~~----------------in~W~VTGTPiq~Iddl~~ 559 (1394)
T KOG0298|consen 527 -SSSAAAEMVRRLHA----------------INRWCVTGTPIQKIDDLFP 559 (1394)
T ss_pred -hHHHHHHHHHHhhh----------------hceeeecCCchhhhhhhHH
Confidence 45566666677763 3456778885555555443
No 337
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.69 E-value=1.8 Score=40.70 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=15.7
Q ss_pred cEEEEcCCCCchHHHHHHHH
Q 043110 75 DVLVNAATGTGKTVAYLAPI 94 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~lp~ 94 (316)
-+++.+|+|+|||....--+
T Consensus 225 vi~lvGptGvGKTTtaaKLA 244 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLA 244 (432)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999998864433
No 338
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.66 E-value=1.5 Score=39.36 Aligned_cols=16 Identities=44% Similarity=0.594 Sum_probs=14.3
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
++++.||.|+|||.+.
T Consensus 40 ~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 40 HLLFAGPPGTGKTTAA 55 (319)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5899999999999775
No 339
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.64 E-value=2 Score=38.35 Aligned_cols=74 Identities=20% Similarity=0.139 Sum_probs=41.2
Q ss_pred ceeEEEEecchhhhcCCc---HHHHHHHHHHhccCcccccCCCCccccccceEEEEeeec-chhHHHHHHHhcCCCEEEE
Q 043110 186 NLRWIIFDEADRILELGF---GKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATL-NEKVNHLTKISLETPVLIG 261 (316)
Q Consensus 186 ~l~~lViDEad~l~~~~~---~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~-~~~v~~~~~~~l~~p~~i~ 261 (316)
.-+.+.|||+|.+-...- .+..++|...+-- +-....+..--++.+.||- |=.+...+++.+..-++|-
T Consensus 225 kPSIIFiDEiDslcg~r~enEseasRRIKTEfLV-------QMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIP 297 (439)
T KOG0739|consen 225 KPSIIFIDEIDSLCGSRSENESEASRRIKTEFLV-------QMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIP 297 (439)
T ss_pred CCcEEEeehhhhhccCCCCCchHHHHHHHHHHHH-------hhhccccCCCceEEEecCCCchhHHHHHHHHhhcceecc
Confidence 456789999998775421 1222222222110 0011223344577778885 5556667777777777777
Q ss_pred cCCCC
Q 043110 262 LDEKK 266 (316)
Q Consensus 262 ~~~~~ 266 (316)
+.+..
T Consensus 298 LPe~~ 302 (439)
T KOG0739|consen 298 LPEAH 302 (439)
T ss_pred CCcHH
Confidence 66544
No 340
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.62 E-value=0.58 Score=47.93 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=14.6
Q ss_pred EEEEcCCCCchHHHHHH
Q 043110 76 VLVNAATGTGKTVAYLA 92 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~l 92 (316)
+++.||.|+|||.+..+
T Consensus 41 yLFtGPpGtGKTTLARi 57 (944)
T PRK14949 41 YLFTGTRGVGKTSLARL 57 (944)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 58999999999988644
No 341
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=93.55 E-value=0.53 Score=43.94 Aligned_cols=49 Identities=16% Similarity=0.176 Sum_probs=36.5
Q ss_pred ceeEEEEecchhhhcC-CcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHH
Q 043110 186 NLRWIIFDEADRILEL-GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNH 248 (316)
Q Consensus 186 ~l~~lViDEad~l~~~-~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~ 248 (316)
++++++||+++.+... .....+-.+++.+... ..|+++.|...|.++..
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~--------------~kqIvltsdr~P~~l~~ 224 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLEN--------------GKQIVLTSDRPPKELNG 224 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhc--------------CCEEEEEcCCCchhhcc
Confidence 5789999999998764 4566677777777652 45888888888877663
No 342
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.51 E-value=1.5 Score=42.01 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=14.7
Q ss_pred EEEEcCCCCchHHHHHH
Q 043110 76 VLVNAATGTGKTVAYLA 92 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~l 92 (316)
+++.||+|+|||..+.+
T Consensus 39 ~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 39 YIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 69999999999987644
No 343
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.50 E-value=0.17 Score=43.87 Aligned_cols=53 Identities=23% Similarity=0.226 Sum_probs=36.3
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL 134 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 134 (316)
.|..+++.+++|+|||...+--+.+.+.+ |-.++|++ +.+-..|+.+.+..++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~---------ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM---------GEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc---------CCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 45679999999999998754444444432 33488888 4566777777776654
No 344
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.50 E-value=0.26 Score=43.18 Aligned_cols=49 Identities=20% Similarity=0.375 Sum_probs=33.1
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEIL 130 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~ 130 (316)
.+.++++.|++|+|||..+. ++.+.+.. . |. -++.+++.+|+.++....
T Consensus 104 ~~~nl~l~G~~G~GKThLa~-Ai~~~l~~-~-------g~-sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAI-AIGNELLK-A-------GI-SVLFITAPDLLSKLKAAF 152 (254)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHHH-c-------CC-eEEEEEHHHHHHHHHHHH
Confidence 67799999999999997653 34444443 1 22 456667888876665443
No 345
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=93.47 E-value=2.1 Score=36.04 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=26.0
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCC
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 119 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt 119 (316)
.|.-+.+.+++|+|||...+-.+.+.... +-.++++.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~---------g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQ---------GKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---------CCeEEEEECC
Confidence 34568999999999998865444443322 3347777764
No 346
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=93.45 E-value=0.044 Score=45.07 Aligned_cols=45 Identities=27% Similarity=0.368 Sum_probs=29.2
Q ss_pred HHhcCCcEEEeCcHHHHHHHhcCCcc-ccCceeEEEEecchhhhcC
Q 043110 157 RLRKGISILVATPGHLLDHLKHTSSF-LHTNLRWIIFDEADRILEL 201 (316)
Q Consensus 157 ~l~~~~~IlV~Tp~~l~~~l~~~~~~-~~~~l~~lViDEad~l~~~ 201 (316)
.....++|||++...|++........ ...+-.+|||||||.|.+.
T Consensus 115 ~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 115 ELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp HCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred HhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 33455899999999887755432221 1124468999999998763
No 347
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.37 E-value=0.2 Score=45.73 Aligned_cols=44 Identities=16% Similarity=0.328 Sum_probs=30.1
Q ss_pred HhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHH
Q 043110 70 ILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELC 123 (316)
Q Consensus 70 il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~ 123 (316)
+..+++++++|+||||||.. +-+++..+-. .-+++.+--+.||.
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~ip~---------~~ri~tiEd~~El~ 200 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREIPA---------IERLITVEDAREIV 200 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhCCC---------CCeEEEecCCCccc
Confidence 34678999999999999975 3444444422 23477776777764
No 348
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.33 E-value=1.1 Score=40.66 Aligned_cols=41 Identities=20% Similarity=0.163 Sum_probs=27.9
Q ss_pred CcHHHHHHHHHHh----CCC---cEEEEcCCCCchHHHHHHHHHHHhhh
Q 043110 59 PTKVQAQAIPVIL----SGR---DVLVNAATGTGKTVAYLAPIINHLQS 100 (316)
Q Consensus 59 p~~~Q~~~i~~il----~g~---d~li~a~TGsGKT~~~~lp~l~~l~~ 100 (316)
.+|||+..+..+. .|+ -.++.||.|.||+..+.. +.+.+..
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~-~A~~llC 50 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRA-LAQWLMC 50 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHH-HHHHHcC
Confidence 3678877776665 444 378999999999987543 3344444
No 349
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=93.29 E-value=2.5 Score=38.64 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=28.7
Q ss_pred CcHHHHHHHHHHh----CCC---cEEEEcCCCCchHHHHHHHHHHHhhh
Q 043110 59 PTKVQAQAIPVIL----SGR---DVLVNAATGTGKTVAYLAPIINHLQS 100 (316)
Q Consensus 59 p~~~Q~~~i~~il----~g~---d~li~a~TGsGKT~~~~lp~l~~l~~ 100 (316)
.+|||...|..+. +|+ -.++.||.|.||+..+.. +.+.+..
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~-~A~~LlC 50 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYA-LSRWLMC 50 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHH-HHHHHcC
Confidence 5678888887765 344 378999999999987543 4444444
No 350
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.25 E-value=2.1 Score=41.81 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=14.6
Q ss_pred EEEEcCCCCchHHHHHH
Q 043110 76 VLVNAATGTGKTVAYLA 92 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~l 92 (316)
+++.||.|+|||.++.+
T Consensus 41 ~Lf~Gp~G~GKTt~A~~ 57 (527)
T PRK14969 41 YLFTGTRGVGKTTLARI 57 (527)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999987654
No 351
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.21 E-value=1 Score=41.60 Aligned_cols=112 Identities=19% Similarity=0.188 Sum_probs=65.8
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChH
Q 043110 73 GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRS 152 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (316)
.+.+.+.|+.|.|||+. +-++........ ..+ +...+.+.++++.+.++. ++.+.-
T Consensus 62 ~~GlYl~G~vG~GKT~L--md~f~~~lp~~~------k~R----~HFh~Fm~~vh~~l~~~~------------~~~~~l 117 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTML--MDLFYDSLPIKR------KRR----VHFHEFMLDVHSRLHQLR------------GQDDPL 117 (362)
T ss_pred CceEEEECCCCCchhHH--HHHHHHhCCccc------ccc----ccccHHHHHHHHHHHHHh------------CCCccH
Confidence 45799999999999974 322222111100 111 245677888887777754 111110
Q ss_pred HHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCcccccc
Q 043110 153 KEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVK 232 (316)
Q Consensus 153 ~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~ 232 (316)
. .+.+.+. .+..+|++||.|. .|-+-...+..+++.+-.. .
T Consensus 118 ~-----------------~va~~l~-------~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~--------------g 158 (362)
T PF03969_consen 118 P-----------------QVADELA-------KESRLLCFDEFQV-TDIADAMILKRLFEALFKR--------------G 158 (362)
T ss_pred H-----------------HHHHHHH-------hcCCEEEEeeeec-cchhHHHHHHHHHHHHHHC--------------C
Confidence 0 1122222 3567899999995 4555556677777776542 5
Q ss_pred ceEEEEeeecchhHH
Q 043110 233 RQNLLLSATLNEKVN 247 (316)
Q Consensus 233 ~q~i~~SAT~~~~v~ 247 (316)
.-+|+.|-+.|+++-
T Consensus 159 vvlVaTSN~~P~~Ly 173 (362)
T PF03969_consen 159 VVLVATSNRPPEDLY 173 (362)
T ss_pred CEEEecCCCChHHHc
Confidence 677888888887743
No 352
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.19 E-value=0.28 Score=48.52 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=17.1
Q ss_pred EEEEcCCCCchHHHHHHHHHHHhh
Q 043110 76 VLVNAATGTGKTVAYLAPIINHLQ 99 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~lp~l~~l~ 99 (316)
+++.|+.|+|||....+ +...+.
T Consensus 41 ~LFtGP~GvGKTTLAri-LAkaLn 63 (700)
T PRK12323 41 YLFTGTRGVGKTTLSRI-LAKSLN 63 (700)
T ss_pred EEEECCCCCCHHHHHHH-HHHHhc
Confidence 69999999999987654 333343
No 353
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.17 E-value=1.1 Score=42.06 Aligned_cols=18 Identities=33% Similarity=0.470 Sum_probs=15.0
Q ss_pred cEEEEcCCCCchHHHHHH
Q 043110 75 DVLVNAATGTGKTVAYLA 92 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~l 92 (316)
-+++.||.|+|||.....
T Consensus 38 a~Lf~Gp~G~GKt~lA~~ 55 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARA 55 (394)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 489999999999987543
No 354
>PRK06904 replicative DNA helicase; Validated
Probab=93.13 E-value=2.3 Score=40.81 Aligned_cols=152 Identities=19% Similarity=0.165 Sum_probs=72.3
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCC-CC
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGG-GN 150 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~-~~ 150 (316)
.|.=+++.|.+|.|||... +-+....... .+..+++.+.- .-..|+..++-..... +....+..| .-
T Consensus 220 ~G~LiiIaarPg~GKTafa-lnia~~~a~~-------~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~---v~~~~i~~g~~l 287 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTFA-MNLCENAAMA-------SEKPVLVFSLE-MPAEQIMMRMLASLSR---VDQTKIRTGQNL 287 (472)
T ss_pred CCcEEEEEeCCCCChHHHH-HHHHHHHHHh-------cCCeEEEEecc-CCHHHHHHHHHHhhCC---CCHHHhccCCCC
Confidence 3444888999999999754 4444443321 12336666533 3345555544333221 111111122 22
Q ss_pred hHHHHH-------HHhcCCcEEEe-----CcHHHHHHHhcCCccccCceeEEEEecchhhhcCC----cHHHHHHHHHHh
Q 043110 151 RSKEKA-------RLRKGISILVA-----TPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELG----FGKEIEEILDIL 214 (316)
Q Consensus 151 ~~~~~~-------~l~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~----~~~~i~~i~~~l 214 (316)
...++. .+...+++.|- |+..+...++.... ....++++|||=.+.|...+ ....+..|.+.|
T Consensus 288 ~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~-~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~L 366 (472)
T PRK06904 288 DQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYR-ENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSL 366 (472)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 222222 22233446553 44444443332111 11257899999998775332 233455555555
Q ss_pred ccCcccccCCCCccccccceEEEEeeecchhHH
Q 043110 215 GSRNIASIGEGNEVSNVKRQNLLLSATLNEKVN 247 (316)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~ 247 (316)
+... ..-++.++++| -++..++
T Consensus 367 K~lA----------kel~ipVi~ls-QLnR~~e 388 (472)
T PRK06904 367 KALA----------KELKVPVVALS-QLNRTLE 388 (472)
T ss_pred HHHH----------HHhCCeEEEEE-ecCchhh
Confidence 4211 01156677766 4554443
No 355
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.07 E-value=1.1 Score=43.49 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=19.5
Q ss_pred CceeEEEEecchhhhcCCcHHHHHHHHHHhcc
Q 043110 185 TNLRWIIFDEADRILELGFGKEIEEILDILGS 216 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~ 216 (316)
...+++||||+|.+.. ..++.+++.+..
T Consensus 115 ~~~kVVIIDEad~ls~----~a~naLLk~LEe 142 (504)
T PRK14963 115 GGRKVYILDEAHMMSK----SAFNALLKTLEE 142 (504)
T ss_pred CCCeEEEEECccccCH----HHHHHHHHHHHh
Confidence 4678999999998743 445566666643
No 356
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.07 E-value=0.87 Score=46.33 Aligned_cols=55 Identities=22% Similarity=0.340 Sum_probs=33.1
Q ss_pred ccCCcccCCCCHHHHHHHHHHcC--CCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 043110 33 ASCCFSSLGLDSTLCDQLRERLG--FEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~g--~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~ 90 (316)
...+|++++-....++.+.+... +.+|.-++... +..++.+++.||+|+|||...
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g---i~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG---IEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCceEEEECCCCCChHHHH
Confidence 45678888766666666633222 22222222111 134577999999999999763
No 357
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=93.06 E-value=0.72 Score=40.40 Aligned_cols=130 Identities=18% Similarity=0.132 Sum_probs=65.0
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChH
Q 043110 73 GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRS 152 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (316)
|.=+++.|.||.|||...+=-+.+.... .+..++|++.--. ..++..++-........ .-+..+....
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~--------~~~~vly~SlEm~-~~~l~~R~la~~s~v~~---~~i~~g~l~~ 86 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALN--------GGYPVLYFSLEMS-EEELAARLLARLSGVPY---NKIRSGDLSD 86 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHT--------TSSEEEEEESSS--HHHHHHHHHHHHHTSTH---HHHHCCGCHH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHh--------cCCeEEEEcCCCC-HHHHHHHHHHHhhcchh---hhhhccccCH
Confidence 3458999999999997654444444433 1344888875322 23334333333222111 1111222222
Q ss_pred HHHHH-------HhcCCcEEEeCcH----HHHHHHhcCCccccCceeEEEEecchhhhcC----CcHHHHHHHHHHhc
Q 043110 153 KEKAR-------LRKGISILVATPG----HLLDHLKHTSSFLHTNLRWIIFDEADRILEL----GFGKEIEEILDILG 215 (316)
Q Consensus 153 ~~~~~-------l~~~~~IlV~Tp~----~l~~~l~~~~~~~~~~l~~lViDEad~l~~~----~~~~~i~~i~~~l~ 215 (316)
.+... +....-.+..+|. .+...+....... ..++++|||=.|.|-.. +....+..+...|.
T Consensus 87 ~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~-~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk 163 (259)
T PF03796_consen 87 EEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREG-KKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELK 163 (259)
T ss_dssp HHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHS-TTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhc-cCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 32222 2222223344443 4555444322222 57899999999987663 34455555555544
No 358
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.99 E-value=0.86 Score=46.01 Aligned_cols=44 Identities=9% Similarity=0.133 Sum_probs=36.2
Q ss_pred ceeEEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecch
Q 043110 186 NLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNE 244 (316)
Q Consensus 186 ~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~ 244 (316)
+--++|+|+-|.+.+......++.+++..|. +.+.++.|=+-|+
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~---------------~l~lvv~SR~rP~ 172 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFLLKHAPE---------------NLTLVVTSRSRPQ 172 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHHHHhCCC---------------CeEEEEEeccCCC
Confidence 3459999999999998888889999999887 7778877766653
No 359
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.93 E-value=2.6 Score=41.64 Aligned_cols=17 Identities=35% Similarity=0.407 Sum_probs=14.7
Q ss_pred EEEEcCCCCchHHHHHH
Q 043110 76 VLVNAATGTGKTVAYLA 92 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~l 92 (316)
.++.||.|+|||.+..+
T Consensus 41 yLf~Gp~G~GKtt~A~~ 57 (576)
T PRK14965 41 FLFTGARGVGKTSTARI 57 (576)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999988654
No 360
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=92.89 E-value=1.1 Score=41.91 Aligned_cols=53 Identities=23% Similarity=0.348 Sum_probs=28.8
Q ss_pred CCcccCCCCHHHHHHHHHHc--CCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 043110 35 CCFSSLGLDSTLCDQLRERL--GFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 35 ~~f~~~~l~~~l~~~l~~~~--g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~ 90 (316)
.+|++++-.++.++.+.+.. .+.+|..++... +...+.+++.||+|+|||+..
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g---~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVG---IEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCCceEEECCCCCChHHHH
Confidence 45677765555555553322 222222222110 112356999999999999864
No 361
>PHA00012 I assembly protein
Probab=92.88 E-value=1.5 Score=39.68 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=20.0
Q ss_pred EEEEcCCCCchHHHHHHHHHHHhhh
Q 043110 76 VLVNAATGTGKTVAYLAPIINHLQS 100 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~lp~l~~l~~ 100 (316)
.++.+..|+|||+..+.-++..+.+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHc
Confidence 5789999999999987766666654
No 362
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.87 E-value=1.1 Score=44.09 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=14.9
Q ss_pred EEEEcCCCCchHHHHHH
Q 043110 76 VLVNAATGTGKTVAYLA 92 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~l 92 (316)
++++||.|+|||.++.+
T Consensus 38 ~Lf~Gp~G~GKTt~A~~ 54 (584)
T PRK14952 38 YLFSGPRGCGKTSSARI 54 (584)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999988754
No 363
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.76 E-value=0.85 Score=42.97 Aligned_cols=92 Identities=16% Similarity=0.072 Sum_probs=45.4
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChH
Q 043110 73 GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRS 152 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (316)
|.-+.+.||||+|||.....-+...+.... ....+++.+.+.-.+ ..+.+..++..++ +............
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~------~~~v~~i~~d~~rig--alEQL~~~a~ilG-vp~~~v~~~~dl~ 261 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHG------ADKVALLTTDSYRIG--GHEQLRIYGKLLG-VSVRSIKDIADLQ 261 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC------CCeEEEEecCCcchh--HHHHHHHHHHHcC-CceecCCCHHHHH
Confidence 455899999999999886432222222211 112255666553332 2333455554433 2222222222222
Q ss_pred HHHHHHhcCCcEEEeCcHHHH
Q 043110 153 KEKARLRKGISILVATPGHLL 173 (316)
Q Consensus 153 ~~~~~l~~~~~IlV~Tp~~l~ 173 (316)
.....+...-.|+|-|+|+..
T Consensus 262 ~al~~l~~~d~VLIDTaGrsq 282 (420)
T PRK14721 262 LMLHELRGKHMVLIDTVGMSQ 282 (420)
T ss_pred HHHHHhcCCCEEEecCCCCCc
Confidence 223333333458899998643
No 364
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=92.75 E-value=0.95 Score=37.46 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=37.2
Q ss_pred CceeEEEEecchhhhcCCcH--HHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHh
Q 043110 185 TNLRWIIFDEADRILELGFG--KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKIS 253 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~--~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~ 253 (316)
...+++|+||.-..+..++. +++..+++.-|. ..-+|+..-..|+.+.+++...
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~---------------~~~vIiTGr~ap~~lie~ADlV 176 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKARPE---------------HTHVIITGRGAPPELIELADLV 176 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCC---------------CcEEEEECCCCCHHHHHHHHHH
Confidence 36889999999999887754 445455544433 4556666666788888877654
No 365
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.75 E-value=1.3 Score=45.77 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=15.1
Q ss_pred cEEEEcCCCCchHHHHH
Q 043110 75 DVLVNAATGTGKTVAYL 91 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~ 91 (316)
+.++.||+|+|||...-
T Consensus 201 n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 201 NPVLIGEPGVGKTAIVE 217 (857)
T ss_pred ceEEECCCCCCHHHHHH
Confidence 79999999999998753
No 366
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=92.70 E-value=0.79 Score=38.80 Aligned_cols=17 Identities=29% Similarity=0.562 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCCchHHH
Q 043110 73 GRDVLVNAATGTGKTVA 89 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~ 89 (316)
++.+++.||.|+|||..
T Consensus 20 ~~~~~l~G~rg~GKTsL 36 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL 36 (234)
T ss_dssp SSEEEEEESTTSSHHHH
T ss_pred CcEEEEEcCCcCCHHHH
Confidence 35699999999999974
No 367
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=92.69 E-value=0.28 Score=50.67 Aligned_cols=53 Identities=30% Similarity=0.345 Sum_probs=33.1
Q ss_pred cCCcccCCCCHHHHHHHHHHcCCC---CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 043110 34 SCCFSSLGLDSTLCDQLRERLGFE---APTKVQAQAIPVILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 34 ~~~f~~~~l~~~l~~~l~~~~g~~---~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~ 90 (316)
.-+|++.|....+...| +.+-+. .|--+|... +..-+-++..+|.|+|||+..
T Consensus 261 ~v~fd~vggl~~~i~~L-KEmVl~PLlyPE~f~~~~---itpPrgvL~~GppGTGkTl~a 316 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQL-KEMVLLPLLYPEFFDNFN---ITPPRGVLFHGPPGTGKTLMA 316 (1080)
T ss_pred ccCccccccHHHHHHHH-HHHHHhHhhhhhHhhhcc---cCCCcceeecCCCCCchhHHH
Confidence 35788998777777777 333322 222222111 123355999999999999874
No 368
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=92.67 E-value=0.87 Score=37.33 Aligned_cols=53 Identities=15% Similarity=0.263 Sum_probs=33.6
Q ss_pred CceeEEEEecchhhhcCCcH--HHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHH
Q 043110 185 TNLRWIIFDEADRILELGFG--KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKI 252 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~--~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~ 252 (316)
...++||+||+-..++.++- +++..+++.-|. ..-+|+.--..|+.+.+.+..
T Consensus 95 ~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~---------------~~evVlTGR~~~~~l~e~ADl 149 (172)
T PF02572_consen 95 GEYDLVILDEINYAVDYGLLSEEEVLDLLENRPE---------------SLEVVLTGRNAPEELIEAADL 149 (172)
T ss_dssp TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-T---------------T-EEEEE-SS--HHHHHH-SE
T ss_pred CCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCC---------------CeEEEEECCCCCHHHHHhCCe
Confidence 46889999999999988764 445555554333 667788777788888887763
No 369
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.66 E-value=2.1 Score=43.60 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCchHHHHH
Q 043110 74 RDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~ 91 (316)
.++++.||+|+|||...-
T Consensus 204 ~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 479999999999998753
No 370
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.63 E-value=1.3 Score=42.35 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=31.9
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHH
Q 043110 73 GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL 133 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 133 (316)
|.-+++.+++|+|||...+- ++..+.. .+.+++|+..- +-..|+...+..+
T Consensus 94 GsvilI~G~pGsGKTTL~lq-~a~~~a~--------~g~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQ-VACQLAK--------NQMKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHH-HHHHHHh--------cCCcEEEEECc-CCHHHHHHHHHHc
Confidence 45689999999999987543 3333322 12348888754 4456666555543
No 371
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=92.59 E-value=0.46 Score=39.56 Aligned_cols=106 Identities=17% Similarity=0.201 Sum_probs=57.3
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChH
Q 043110 73 GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRS 152 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (316)
|+=.++.+|..||||...+--+-.... .|.++++..|-..- . +..-.+..-. |..
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~---------~g~~v~vfkp~iD~---------R----~~~~~V~Sr~-G~~-- 58 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKE---------AGMKVLVFKPAIDT---------R----YGVGKVSSRI-GLS-- 58 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHH---------cCCeEEEEeccccc---------c----cccceeeecc-CCc--
Confidence 344689999999999864333322222 24558888876331 0 0111111111 111
Q ss_pred HHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHh
Q 043110 153 KEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDIL 214 (316)
Q Consensus 153 ~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l 214 (316)
..-++|-.+..+.+.+...... ..++.+.||||+-+.+ ..-..+..+...+
T Consensus 59 --------~~A~~i~~~~~i~~~i~~~~~~--~~~~~v~IDEaQF~~~-~~v~~l~~lad~l 109 (201)
T COG1435 59 --------SEAVVIPSDTDIFDEIAALHEK--PPVDCVLIDEAQFFDE-ELVYVLNELADRL 109 (201)
T ss_pred --------ccceecCChHHHHHHHHhcccC--CCcCEEEEehhHhCCH-HHHHHHHHHHhhc
Confidence 1246666777777777653221 1278999999997433 2334445554443
No 372
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.59 E-value=1.1 Score=43.76 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=14.7
Q ss_pred EEEEcCCCCchHHHHHH
Q 043110 76 VLVNAATGTGKTVAYLA 92 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~l 92 (316)
+++.||.|+|||.....
T Consensus 41 ~Lf~Gp~GvGKTTlAr~ 57 (546)
T PRK14957 41 YLFTGTRGVGKTTLGRL 57 (546)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 78999999999987644
No 373
>PRK09354 recA recombinase A; Provisional
Probab=92.51 E-value=0.56 Score=42.97 Aligned_cols=42 Identities=26% Similarity=0.275 Sum_probs=29.5
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHH
Q 043110 73 GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELC 123 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~ 123 (316)
|+-+.+.+|+|+|||...+-.+.+.... +..++|+..-..+-
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~---------G~~~~yId~E~s~~ 101 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA---------GGTAAFIDAEHALD 101 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---------CCcEEEECCccchH
Confidence 4568899999999998876555444332 44588887666555
No 374
>PRK09087 hypothetical protein; Validated
Probab=92.45 E-value=1.2 Score=38.35 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
+.-+++.||+|+|||-..
T Consensus 44 ~~~l~l~G~~GsGKThLl 61 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLA 61 (226)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 334899999999999753
No 375
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.38 E-value=1.4 Score=44.88 Aligned_cols=54 Identities=26% Similarity=0.367 Sum_probs=32.4
Q ss_pred cCCcccCCCCHHHHHHHHHHcC--CCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 043110 34 SCCFSSLGLDSTLCDQLRERLG--FEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 34 ~~~f~~~~l~~~l~~~l~~~~g--~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~ 90 (316)
..+|++++-.+.+++.|.+... +..|..++..- +...+.+++.||+|+|||+..
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG---IRPPKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEECCCCCCHHHHH
Confidence 3468888877777777744322 22222221111 112346899999999999864
No 376
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.37 E-value=1.8 Score=35.78 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=18.9
Q ss_pred CceeEEEEecchhhhcCCcHHHHHHHHHHhc
Q 043110 185 TNLRWIIFDEADRILELGFGKEIEEILDILG 215 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~~~i~~i~~~l~ 215 (316)
..-+++||||+|.+.. ...+.++..+.
T Consensus 95 ~~~kviiide~~~l~~----~~~~~Ll~~le 121 (188)
T TIGR00678 95 SGRRVVIIEDAERMNE----AAANALLKTLE 121 (188)
T ss_pred CCeEEEEEechhhhCH----HHHHHHHHHhc
Confidence 4678999999999854 33445555554
No 377
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=92.36 E-value=0.11 Score=49.91 Aligned_cols=49 Identities=29% Similarity=0.331 Sum_probs=34.8
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHH
Q 043110 74 RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL 133 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 133 (316)
.++++.||||||||..+++|.+-... . -+||.=|--||........++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~~---~--------s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNYP---G--------SMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhcc---C--------CEEEEECCCcHHHHHHHHHHHC
Confidence 46999999999999999999763211 1 1667777777776665555544
No 378
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.33 E-value=1.2 Score=43.08 Aligned_cols=60 Identities=18% Similarity=0.094 Sum_probs=39.9
Q ss_pred HHHHHHhC-----CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHH
Q 043110 65 QAIPVILS-----GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL 134 (316)
Q Consensus 65 ~~i~~il~-----g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 134 (316)
..++.++. |.-+++.+|+|+|||...+--+.+.+.+ |-+++|++ .-|-..|+...++.++
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~---------ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN---------KERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 34555554 3569999999999998654433333322 34488887 5666788888877654
No 379
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=92.32 E-value=4 Score=37.83 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=18.3
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHhhh
Q 043110 75 DVLVNAATGTGKTVAYLAPIINHLQS 100 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~lp~l~~l~~ 100 (316)
-.++.||.|+||+..+. .+...+..
T Consensus 43 A~Lf~Gp~G~GK~~lA~-~~A~~Llc 67 (365)
T PRK07471 43 AWLIGGPQGIGKATLAY-RMARFLLA 67 (365)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHhC
Confidence 38999999999998753 34455544
No 380
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=92.29 E-value=0.24 Score=47.70 Aligned_cols=30 Identities=10% Similarity=0.129 Sum_probs=23.6
Q ss_pred CceeEEEEecchhhhcCCcHHHHHHHHHHh
Q 043110 185 TNLRWIIFDEADRILELGFGKEIEEILDIL 214 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~~~i~~i~~~l 214 (316)
..-++.|+|||-.-++.+.+..+.++.+..
T Consensus 587 ~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~ 616 (659)
T KOG0060|consen 587 HKPKFAILDECTSAVTEDVEGALYRKCREM 616 (659)
T ss_pred cCCceEEeechhhhccHHHHHHHHHHHHHc
Confidence 456899999999988877777777766654
No 381
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=92.27 E-value=1.4 Score=43.38 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=15.2
Q ss_pred cEEEEcCCCCchHHHHHH
Q 043110 75 DVLVNAATGTGKTVAYLA 92 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~l 92 (316)
-+++.||.|+|||..+..
T Consensus 40 A~Lf~GP~GvGKTTlA~~ 57 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKI 57 (605)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 478999999999987644
No 382
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.26 E-value=3.2 Score=35.23 Aligned_cols=133 Identities=15% Similarity=0.092 Sum_probs=66.2
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEe---CChHHHHHHHHHHHHHHhhcCCceeEEe---eC
Q 043110 74 RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV---PTSELCLLVYEILQKLLHRFRWIVPGYV---MG 147 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~---Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~---~~ 147 (316)
.=+++.++.|+|||....--+.-.+.. +.++.+++ ++++...|....=-.+...+-+-....+ ..
T Consensus 29 sL~lIEGd~~tGKSvLsqr~~YG~L~~---------g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~ 99 (235)
T COG2874 29 SLILIEGDNGTGKSVLSQRFAYGFLMN---------GYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLE 99 (235)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHhC---------CceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEeccc
Confidence 348999999999998754444444433 44466665 5666666653321111111100011111 11
Q ss_pred CCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCc
Q 043110 148 GGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNE 227 (316)
Q Consensus 148 ~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~ 227 (316)
+..+..... ..+++.+-+... ..+-+++|+|-...+....-...+..++..+.+.+
T Consensus 100 ~~~~~~~~~-------------~~~L~~l~~~~k--~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~--------- 155 (235)
T COG2874 100 PVNWGRRSA-------------RKLLDLLLEFIK--RWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLS--------- 155 (235)
T ss_pred ccccChHHH-------------HHHHHHHHhhHH--hhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHH---------
Confidence 222211111 112222221111 13456899999988776554455666666655421
Q ss_pred cccccceEEEEeeec
Q 043110 228 VSNVKRQNLLLSATL 242 (316)
Q Consensus 228 ~~~~~~q~i~~SAT~ 242 (316)
..-.+|++|+..
T Consensus 156 ---d~gKvIilTvhp 167 (235)
T COG2874 156 ---DLGKVIILTVHP 167 (235)
T ss_pred ---hCCCEEEEEeCh
Confidence 155788888763
No 383
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.22 E-value=1.6 Score=43.50 Aligned_cols=19 Identities=32% Similarity=0.338 Sum_probs=15.8
Q ss_pred CcEEEEcCCCCchHHHHHH
Q 043110 74 RDVLVNAATGTGKTVAYLA 92 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~l 92 (316)
..+++.||.|+|||..+..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~ 57 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARI 57 (620)
T ss_pred ceEEEECCCCCChHHHHHH
Confidence 3579999999999987644
No 384
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.22 E-value=1.7 Score=37.12 Aligned_cols=52 Identities=23% Similarity=0.217 Sum_probs=32.4
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL 133 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 133 (316)
.|.-+++.+++|+|||...+--+...+.+ +-.++|++-. +-..|+.+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~---------g~~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN---------GEKAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---------CCeEEEEECC-CCHHHHHHHHHHc
Confidence 34568999999999987643334333332 3347777654 4466666666554
No 385
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=92.20 E-value=1.2 Score=42.17 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=16.8
Q ss_pred hCCCcEEEEcCCCCchHHHHHH
Q 043110 71 LSGRDVLVNAATGTGKTVAYLA 92 (316)
Q Consensus 71 l~g~d~li~a~TGsGKT~~~~l 92 (316)
..|.=+++.|++|+|||...+-
T Consensus 192 ~~g~liviag~pg~GKT~~al~ 213 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKTTLALN 213 (421)
T ss_pred CCCceEEEEeCCCCCHHHHHHH
Confidence 3455689999999999976543
No 386
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=92.13 E-value=0.62 Score=43.30 Aligned_cols=64 Identities=28% Similarity=0.373 Sum_probs=39.7
Q ss_pred cccccCCcccC-CCCHHHHHHHHHHcCCCC--CcHHHHHHHHHHh---CCCcEEEEcCCCCchHHHHHHHHHHHhhh
Q 043110 30 EIFASCCFSSL-GLDSTLCDQLRERLGFEA--PTKVQAQAIPVIL---SGRDVLVNAATGTGKTVAYLAPIINHLQS 100 (316)
Q Consensus 30 ~~~~~~~f~~~-~l~~~l~~~l~~~~g~~~--p~~~Q~~~i~~il---~g~d~li~a~TGsGKT~~~~lp~l~~l~~ 100 (316)
.......|+++ ++++.- ++.+++ |.+.=.++|+.+. .|+..++.||.|+|||... --+.+.+..
T Consensus 126 ~~~~r~~f~~l~p~~p~~------R~~le~~~~~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTLa-K~Ian~I~~ 195 (416)
T PRK09376 126 KARNRPLFENLTPLYPNE------RLRLETGNPEDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVLL-QNIANSITT 195 (416)
T ss_pred HhcCCCCcccCCCCChhh------cccccCCCCcccceeeeeeecccccCceEEEeCCCCCChhHHH-HHHHHHHHh
Confidence 33455677777 355553 333433 4555566666654 7889999999999999643 234444443
No 387
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.12 E-value=5.5 Score=36.77 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=14.5
Q ss_pred cEEEEcCCCCchHHHHH
Q 043110 75 DVLVNAATGTGKTVAYL 91 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~ 91 (316)
.++++||.|+|||....
T Consensus 41 ~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 41 ALLFCGPRGVGKTTCAR 57 (367)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999997653
No 388
>PF12846 AAA_10: AAA-like domain
Probab=92.12 E-value=0.3 Score=43.34 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=19.4
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHhhh
Q 043110 74 RDVLVNAATGTGKTVAYLAPIINHLQS 100 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~lp~l~~l~~ 100 (316)
.++++.|+||+|||.... .++..+..
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~ 27 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIR 27 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHH
Confidence 578999999999998766 44444433
No 389
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.03 E-value=5.2 Score=36.30 Aligned_cols=42 Identities=14% Similarity=0.076 Sum_probs=29.0
Q ss_pred CCcHHHHHHHHHHh----CCC---cEEEEcCCCCchHHHHHHHHHHHhhh
Q 043110 58 APTKVQAQAIPVIL----SGR---DVLVNAATGTGKTVAYLAPIINHLQS 100 (316)
Q Consensus 58 ~p~~~Q~~~i~~il----~g~---d~li~a~TGsGKT~~~~lp~l~~l~~ 100 (316)
.++|||...+..+. .|+ -.++.||.|.||+..+.. +.+.+..
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~-~a~~llC 51 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVEL-FSRALLC 51 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHcC
Confidence 36788888876665 344 489999999999976543 4444443
No 390
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=91.97 E-value=0.78 Score=46.96 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
|..+++.+|+|+|||..+
T Consensus 347 ~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456999999999999764
No 391
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=91.96 E-value=0.072 Score=49.68 Aligned_cols=48 Identities=33% Similarity=0.348 Sum_probs=35.0
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHH
Q 043110 75 DVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL 133 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 133 (316)
++++.|+||||||.++++|-+.... .-+||+=|--|+........+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~~-----------~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTWP-----------GSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcCC-----------CCEEEEccchhHHHHHHHHHHHc
Confidence 5789999999999999888654321 12788888888887666555443
No 392
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.89 E-value=0.33 Score=42.83 Aligned_cols=44 Identities=18% Similarity=0.328 Sum_probs=30.2
Q ss_pred hCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHH
Q 043110 71 LSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELC 123 (316)
Q Consensus 71 l~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~ 123 (316)
..+.++++.|+||||||... -.++..+... ..+++++-.+.|+-
T Consensus 125 ~~~~~ili~G~tGSGKTT~l-~all~~i~~~--------~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLL-NALLEEIPPE--------DERIVTIEDPPELR 168 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHH-HHHHHHCHTT--------TSEEEEEESSS-S-
T ss_pred ccceEEEEECCCccccchHH-HHHhhhcccc--------ccceEEecccccee
Confidence 45779999999999999764 4455555431 24478888887764
No 393
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=91.79 E-value=0.99 Score=42.86 Aligned_cols=79 Identities=18% Similarity=0.138 Sum_probs=53.9
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHH
Q 043110 46 LCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLL 125 (316)
Q Consensus 46 l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q 125 (316)
+++.+ ++ .+..+...|.++.-..-.|+. .+.+=.|||||....+-+.. +... .+.-++++-+-|+.|+.+
T Consensus 152 ~l~~i-es-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~-lh~k------nPd~~I~~Tfftk~L~s~ 221 (660)
T COG3972 152 LLDTI-ES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAE-LHSK------NPDSRIAFTFFTKILAST 221 (660)
T ss_pred HHHHH-HH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHH-HhcC------CCCceEEEEeehHHHHHH
Confidence 44445 22 344566678776655556666 77899999999875443333 2221 234569999999999999
Q ss_pred HHHHHHHHH
Q 043110 126 VYEILQKLL 134 (316)
Q Consensus 126 ~~~~~~~~~ 134 (316)
+...+.+++
T Consensus 222 ~r~lv~~F~ 230 (660)
T COG3972 222 MRTLVPEFF 230 (660)
T ss_pred HHHHHHHHH
Confidence 999888887
No 394
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.76 E-value=2.4 Score=42.15 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCchHHHHH
Q 043110 74 RDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~ 91 (316)
+-+++.||+|+|||..+-
T Consensus 111 ~illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 111 RILLITGPSGCGKSTTIK 128 (637)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 348999999999998753
No 395
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=91.76 E-value=0.19 Score=47.37 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=22.3
Q ss_pred HHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhh
Q 043110 67 IPVILSGRDVLVNAATGTGKTVAYLAPIINHLQ 99 (316)
Q Consensus 67 i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~ 99 (316)
+|.-...+++++.|+||+|||.+ +..++..+.
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~ 67 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ-IRELLASIR 67 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH-HHHHHHHHH
Confidence 44444567999999999999986 334444443
No 396
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.74 E-value=0.31 Score=48.20 Aligned_cols=32 Identities=34% Similarity=0.342 Sum_probs=27.6
Q ss_pred CceeEEEEecchhhhcCCcHHHHHHHHHHhcc
Q 043110 185 TNLRWIIFDEADRILELGFGKEIEEILDILGS 216 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~ 216 (316)
++-+.||+|||-.-+|..-+..+...+..+..
T Consensus 621 r~P~VLILDEATSALDaeSE~lVq~aL~~~~~ 652 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDAESEYLVQEALDRLMQ 652 (716)
T ss_pred cCCCEEEEechhhhcchhhHHHHHHHHHHhhc
Confidence 46789999999999999888888888887764
No 397
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.72 E-value=2.4 Score=41.94 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=15.1
Q ss_pred cEEEEcCCCCchHHHHHH
Q 043110 75 DVLVNAATGTGKTVAYLA 92 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~l 92 (316)
.+++.||.|+|||.+...
T Consensus 40 a~Lf~Gp~G~GKTtlA~~ 57 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARI 57 (585)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 369999999999987644
No 398
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=91.72 E-value=0.58 Score=43.39 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=20.2
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhh
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQS 100 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~ 100 (316)
.+..+++++|||||||... -.++..+..
T Consensus 148 ~~GlilI~G~TGSGKTT~l-~al~~~i~~ 175 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA-ASIYQHCGE 175 (372)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHHh
Confidence 3446899999999999763 455665543
No 399
>PRK13764 ATPase; Provisional
Probab=91.69 E-value=0.49 Score=46.57 Aligned_cols=27 Identities=19% Similarity=0.377 Sum_probs=20.4
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhh
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQ 99 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~ 99 (316)
.+++++++++||||||... -+++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTTll-~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFA-QALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 4678999999999999753 44555554
No 400
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.69 E-value=2.1 Score=42.34 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=15.5
Q ss_pred cEEEEcCCCCchHHHHHH
Q 043110 75 DVLVNAATGTGKTVAYLA 92 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~l 92 (316)
.+++.+|.|+|||.++.+
T Consensus 40 a~Lf~GPpG~GKTtiAri 57 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARI 57 (624)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 478999999999998754
No 401
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.59 E-value=1.8 Score=39.30 Aligned_cols=18 Identities=33% Similarity=0.329 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCchHHHHH
Q 043110 74 RDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~ 91 (316)
+-+.+.+|+|+|||....
T Consensus 115 ~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIG 132 (318)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 347889999999998753
No 402
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=91.57 E-value=3.3 Score=39.99 Aligned_cols=74 Identities=15% Similarity=0.240 Sum_probs=52.5
Q ss_pred CCcHHHHHHHHHHh------CC----CcEEEEcCCCCchHHHHH-HHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHH
Q 043110 58 APTKVQAQAIPVIL------SG----RDVLVNAATGTGKTVAYL-APIINHLQSYSPRIDRSSGTFALVLVPTSELCLLV 126 (316)
Q Consensus 58 ~p~~~Q~~~i~~il------~g----~d~li~a~TGsGKT~~~~-lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~ 126 (316)
.+-|+|+-.+-.+. .| +..+|..|-+-|||.... +.+...+... ..+-...|++|+.+-+.+.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~------~~~~~~~i~A~s~~qa~~~ 134 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW------RSGAGIYILAPSVEQAANS 134 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh------hcCCcEEEEeccHHHHHHh
Confidence 36799999888776 12 257999999999997643 2222222221 2355599999999999999
Q ss_pred HHHHHHHHhhc
Q 043110 127 YEILQKLLHRF 137 (316)
Q Consensus 127 ~~~~~~~~~~~ 137 (316)
+..++.+....
T Consensus 135 F~~ar~mv~~~ 145 (546)
T COG4626 135 FNPARDMVKRD 145 (546)
T ss_pred hHHHHHHHHhC
Confidence 99888877543
No 403
>PTZ00293 thymidine kinase; Provisional
Probab=91.57 E-value=2.4 Score=35.93 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=24.8
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCCh
Q 043110 73 GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTS 120 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~ 120 (316)
|+=-++.||.+||||.-.+-.+-..... +.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~a---------g~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYS---------EKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHc---------CCceEEEEecc
Confidence 4456889999999997543333322222 33488888864
No 404
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=91.54 E-value=1.3 Score=46.33 Aligned_cols=145 Identities=21% Similarity=0.213 Sum_probs=99.9
Q ss_pred ccCCcccCCC---CHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcC-CCC---
Q 043110 33 ASCCFSSLGL---DSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYS-PRI--- 105 (316)
Q Consensus 33 ~~~~f~~~~l---~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~-~~~--- 105 (316)
+.-.|.++|| +++ .+||.. |++-+..+...-|++--+.|--=.|+-..+.-+..+.--. +..
T Consensus 710 kdv~FkdLGLlIIDEE------qRFGVk-----~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~ 778 (1139)
T COG1197 710 KDVKFKDLGLLIIDEE------QRFGVK-----HKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRL 778 (1139)
T ss_pred CCcEEecCCeEEEech------hhcCcc-----HHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCc
Confidence 4467999984 454 567775 7888888888888888888888888765444333332111 110
Q ss_pred --------------------CCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHH---HHHh-cC
Q 043110 106 --------------------DRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEK---ARLR-KG 161 (316)
Q Consensus 106 --------------------~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~-~~ 161 (316)
.-..|.++-||.|..+-..++.+.++.+. +.....+.+|.....+.. ..+. ..
T Consensus 779 pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LV---PEarI~vaHGQM~e~eLE~vM~~F~~g~ 855 (1139)
T COG1197 779 PVKTFVSEYDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELV---PEARIAVAHGQMRERELEEVMLDFYNGE 855 (1139)
T ss_pred ceEEEEecCChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhC---CceEEEEeecCCCHHHHHHHHHHHHcCC
Confidence 11357889999999999999988888875 446667777766654332 2333 45
Q ss_pred CcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhh
Q 043110 162 ISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRI 198 (316)
Q Consensus 162 ~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l 198 (316)
.||+|||. .+. .+++..+...+||+-||++
T Consensus 856 ~dVLv~TT-----IIE--tGIDIPnANTiIIe~AD~f 885 (1139)
T COG1197 856 YDVLVCTT-----IIE--TGIDIPNANTIIIERADKF 885 (1139)
T ss_pred CCEEEEee-----eee--cCcCCCCCceEEEeccccc
Confidence 89999994 122 5667778899999999985
No 405
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=91.52 E-value=0.14 Score=50.50 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=21.9
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHh
Q 043110 74 RDVLVNAATGTGKTVAYLAPIINHL 98 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~lp~l~~l 98 (316)
.++++.||||||||..+++|-+...
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~ 183 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW 183 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC
Confidence 4799999999999999999987653
No 406
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=91.50 E-value=3.1 Score=37.83 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=24.4
Q ss_pred EEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHH
Q 043110 77 LVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLL 125 (316)
Q Consensus 77 li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q 125 (316)
++.++.|+|||.+..+.++..+..... +..++++ |+..-+..
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~------~~~vi~~-~~~~~~~~ 42 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP------GRRVIIA-STYRQARD 42 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--------EEEEE-ESSHHHHH
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC------CcEEEEe-cCHHHHHH
Confidence 467899999999987777777655221 2345555 66555444
No 407
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=91.49 E-value=2 Score=42.74 Aligned_cols=112 Identities=21% Similarity=0.318 Sum_probs=67.2
Q ss_pred CcHHHHHHHHHHh--------CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHH
Q 043110 59 PTKVQAQAIPVIL--------SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEIL 130 (316)
Q Consensus 59 p~~~Q~~~i~~il--------~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~ 130 (316)
+..+-.+.+..+. .|+=+++.+|+|.|||-.. ++.|
T Consensus 416 m~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~-----------------------------kSIA------- 459 (906)
T KOG2004|consen 416 MEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIA-----------------------------KSIA------- 459 (906)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHH-----------------------------HHHH-------
Confidence 4556666666554 4567899999999999653 1111
Q ss_pred HHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHH
Q 043110 131 QKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEI 210 (316)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i 210 (316)
+.+.+ -......||.....+...=+. -.+=+-||++.+.++.-+.-. -++.|||+|.+-....++--..+
T Consensus 460 ~ALnR----kFfRfSvGG~tDvAeIkGHRR--TYVGAMPGkiIq~LK~v~t~N----PliLiDEvDKlG~g~qGDPasAL 529 (906)
T KOG2004|consen 460 RALNR----KFFRFSVGGMTDVAEIKGHRR--TYVGAMPGKIIQCLKKVKTEN----PLILIDEVDKLGSGHQGDPASAL 529 (906)
T ss_pred HHhCC----ceEEEeccccccHHhhcccce--eeeccCChHHHHHHHhhCCCC----ceEEeehhhhhCCCCCCChHHHH
Confidence 11111 122234466555444322111 245567999999998643322 37889999998743455556677
Q ss_pred HHHhcc
Q 043110 211 LDILGS 216 (316)
Q Consensus 211 ~~~l~~ 216 (316)
++.|..
T Consensus 530 LElLDP 535 (906)
T KOG2004|consen 530 LELLDP 535 (906)
T ss_pred HHhcCh
Confidence 777654
No 408
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.48 E-value=0.13 Score=46.06 Aligned_cols=17 Identities=35% Similarity=0.593 Sum_probs=15.1
Q ss_pred CcEEEEcCCCCchHHHH
Q 043110 74 RDVLVNAATGTGKTVAY 90 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~ 90 (316)
.|+++.+|||||||+.+
T Consensus 98 SNILLiGPTGsGKTlLA 114 (408)
T COG1219 98 SNILLIGPTGSGKTLLA 114 (408)
T ss_pred ccEEEECCCCCcHHHHH
Confidence 47999999999999865
No 409
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.44 E-value=2.6 Score=39.53 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=15.0
Q ss_pred EEEEcCCCCchHHHHHH
Q 043110 76 VLVNAATGTGKTVAYLA 92 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~l 92 (316)
+++.||.|+|||.++..
T Consensus 41 ~lf~Gp~G~GKtt~A~~ 57 (397)
T PRK14955 41 YIFSGLRGVGKTTAARV 57 (397)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 88999999999988654
No 410
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.35 E-value=1.5 Score=43.42 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=14.9
Q ss_pred EEEEcCCCCchHHHHHH
Q 043110 76 VLVNAATGTGKTVAYLA 92 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~l 92 (316)
+++.||.|+|||....+
T Consensus 41 ~Lf~Gp~GvGKTtlAr~ 57 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRI 57 (618)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 59999999999988655
No 411
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=91.32 E-value=2.2 Score=44.25 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCchHHHHH
Q 043110 74 RDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~ 91 (316)
.+.++.||+|+|||...-
T Consensus 195 ~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 479999999999998753
No 412
>PRK04841 transcriptional regulator MalT; Provisional
Probab=91.24 E-value=3.3 Score=43.05 Aligned_cols=42 Identities=14% Similarity=0.160 Sum_probs=31.7
Q ss_pred eEEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecch
Q 043110 188 RWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNE 244 (316)
Q Consensus 188 ~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~ 244 (316)
-+||||++|.+-+......+..++...+. ...+|+.|-+.|+
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~~---------------~~~lv~~sR~~~~ 164 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQPE---------------NLTLVVLSRNLPP 164 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCCC---------------CeEEEEEeCCCCC
Confidence 48999999998655566678888887766 6778787777543
No 413
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.20 E-value=2.8 Score=36.83 Aligned_cols=17 Identities=41% Similarity=0.647 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCchHHHH
Q 043110 74 RDVLVNAATGTGKTVAY 90 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~ 90 (316)
+-+++.+|.|+|||+++
T Consensus 212 kgvllygppgtgktl~a 228 (435)
T KOG0729|consen 212 KGVLLYGPPGTGKTLCA 228 (435)
T ss_pred CceEEeCCCCCchhHHH
Confidence 56999999999999986
No 414
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=91.01 E-value=5.4 Score=36.33 Aligned_cols=45 Identities=24% Similarity=0.227 Sum_probs=28.1
Q ss_pred HHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhcc
Q 043110 171 HLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216 (316)
Q Consensus 171 ~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~ 216 (316)
.++..+....... +.--++|+||.|.......+..+..++..-.+
T Consensus 123 ~lL~~L~~~~~~t-~~~ViFIldEfDlf~~h~rQtllYnlfDisqs 167 (408)
T KOG2228|consen 123 KLLEALKKGDETT-SGKVIFILDEFDLFAPHSRQTLLYNLFDISQS 167 (408)
T ss_pred HHHHHHhcCCCCC-CceEEEEeehhhccccchhhHHHHHHHHHHhh
Confidence 4555555422221 22247899999988777777777777766553
No 415
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.98 E-value=0.67 Score=40.88 Aligned_cols=43 Identities=28% Similarity=0.442 Sum_probs=27.5
Q ss_pred HHcCCCCCcHHHHHHHHHHhC--CCcEEEEcCCCCchHHHHHHHHHHHh
Q 043110 52 ERLGFEAPTKVQAQAIPVILS--GRDVLVNAATGTGKTVAYLAPIINHL 98 (316)
Q Consensus 52 ~~~g~~~p~~~Q~~~i~~il~--g~d~li~a~TGsGKT~~~~lp~l~~l 98 (316)
..+|+ .+-|.+.+..++. +..+++.++||||||... -.++..+
T Consensus 60 ~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 60 EKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred HHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 44554 3456666655543 335899999999999764 3344444
No 416
>PHA00729 NTP-binding motif containing protein
Probab=90.98 E-value=5.2 Score=34.32 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=14.3
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
++++.|++|+|||..+
T Consensus 19 nIlItG~pGvGKT~LA 34 (226)
T PHA00729 19 SAVIFGKQGSGKTTYA 34 (226)
T ss_pred EEEEECCCCCCHHHHH
Confidence 7999999999999754
No 417
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.97 E-value=0.37 Score=40.00 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=24.4
Q ss_pred CcHHHHHHHHHHh-CCCcEEEEcCCCCchHHHH
Q 043110 59 PTKVQAQAIPVIL-SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 59 p~~~Q~~~i~~il-~g~d~li~a~TGsGKT~~~ 90 (316)
.++-|...+.... .|..+++.+|||||||...
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 4566666665544 6788999999999999763
No 418
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=90.83 E-value=0.38 Score=44.96 Aligned_cols=32 Identities=31% Similarity=0.577 Sum_probs=21.7
Q ss_pred HHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhh
Q 043110 68 PVILSGRDVLVNAATGTGKTVAYLAPIINHLQS 100 (316)
Q Consensus 68 ~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~ 100 (316)
|.-...+++++.|.||||||.+ +-.++..+..
T Consensus 10 ~~~~e~~~~li~G~~GsGKT~~-i~~ll~~~~~ 41 (386)
T PF10412_consen 10 PKDSENRHILIIGATGSGKTQA-IRHLLDQIRA 41 (386)
T ss_dssp -GGGGGG-EEEEE-TTSSHHHH-HHHHHHHHHH
T ss_pred ccchhhCcEEEECCCCCCHHHH-HHHHHHHHHH
Confidence 3344668999999999999974 4667766654
No 419
>PRK04328 hypothetical protein; Provisional
Probab=90.81 E-value=0.53 Score=41.09 Aligned_cols=53 Identities=23% Similarity=0.230 Sum_probs=34.3
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL 134 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 134 (316)
.|.-+++.+++|+|||...+--+.+.+.+ |-.++|++ +.+-..++.+.++.++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~---------ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM---------GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc---------CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 45568999999999987654434444433 33377777 5555666666666654
No 420
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=90.78 E-value=0.61 Score=42.29 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=28.0
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHH
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELC 123 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~ 123 (316)
.|.-+.+.+|+|+|||...+-.+.+.... +..++++..-..+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~---------g~~v~yId~E~~~~ 96 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA---------GGTAAFIDAEHALD 96 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---------CCcEEEEcccchhH
Confidence 44568999999999998765444443322 34477776554443
No 421
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=90.71 E-value=1.5 Score=37.26 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=26.7
Q ss_pred HHHHhC-----CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEe
Q 043110 67 IPVILS-----GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 117 (316)
Q Consensus 67 i~~il~-----g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~ 117 (316)
++.++. |.-+.+.+++|+|||...+--+.+.... +..++++.
T Consensus 8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~---------g~~v~yi~ 54 (218)
T cd01394 8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ---------GKKVAYID 54 (218)
T ss_pred HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhc---------CCeEEEEE
Confidence 455554 4458999999999998764444333221 34477774
No 422
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=90.71 E-value=7.8 Score=31.37 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=13.6
Q ss_pred EEEEcCCCCchHHHHH
Q 043110 76 VLVNAATGTGKTVAYL 91 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~ 91 (316)
+++.+++|+|||....
T Consensus 3 ~~~~G~~G~GKTt~~~ 18 (173)
T cd03115 3 ILLVGLQGVGKTTTAA 18 (173)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5788999999998753
No 423
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=90.67 E-value=4.9 Score=40.57 Aligned_cols=17 Identities=35% Similarity=0.391 Sum_probs=14.7
Q ss_pred EEEEcCCCCchHHHHHH
Q 043110 76 VLVNAATGTGKTVAYLA 92 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~l 92 (316)
.++.||.|+|||.++..
T Consensus 43 YLF~GP~GtGKTt~Ari 59 (725)
T PRK07133 43 YLFSGPRGTGKTSVAKI 59 (725)
T ss_pred EEEECCCCCcHHHHHHH
Confidence 68999999999988644
No 424
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=90.66 E-value=3.3 Score=42.86 Aligned_cols=28 Identities=18% Similarity=0.391 Sum_probs=20.2
Q ss_pred HHHHHHHHh----CC--CcEEEEcCCCCchHHHH
Q 043110 63 QAQAIPVIL----SG--RDVLVNAATGTGKTVAY 90 (316)
Q Consensus 63 Q~~~i~~il----~g--~d~li~a~TGsGKT~~~ 90 (316)
|...+..+. .+ .+.++.||.|+|||...
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 555554443 22 37999999999999875
No 425
>PRK08840 replicative DNA helicase; Provisional
Probab=90.65 E-value=5.3 Score=38.31 Aligned_cols=151 Identities=17% Similarity=0.139 Sum_probs=69.1
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCCh
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNR 151 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (316)
.|.=+++.|.+|.|||...+ -+....... .+..++|.+.- .-..|+..++-..... +...-+..|.-.
T Consensus 216 ~g~LiviaarPg~GKTafal-nia~~~a~~-------~~~~v~~fSlE-Ms~~ql~~Rlla~~s~---v~~~~i~~~~l~ 283 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTFAM-NLCENAAMD-------QDKPVLIFSLE-MPAEQLMMRMLASLSR---VDQTKIRTGQLD 283 (464)
T ss_pred CCceEEEEeCCCCchHHHHH-HHHHHHHHh-------CCCeEEEEecc-CCHHHHHHHHHHhhCC---CCHHHHhcCCCC
Confidence 44458889999999997653 333333221 12336666533 2244554443332211 111111122222
Q ss_pred HHHHHH-------HhcCCcEEEe-Cc----HHHHHHHhcCCccccCceeEEEEecchhhhcCC----cHHHHHHHHHHhc
Q 043110 152 SKEKAR-------LRKGISILVA-TP----GHLLDHLKHTSSFLHTNLRWIIFDEADRILELG----FGKEIEEILDILG 215 (316)
Q Consensus 152 ~~~~~~-------l~~~~~IlV~-Tp----~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~----~~~~i~~i~~~l~ 215 (316)
..++.. +....++.|- +| ..+...++.... ....++++|||=.+.|...+ ....+..|.+.|+
T Consensus 284 ~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~-~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK 362 (464)
T PRK08840 284 DEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAR-EHGGLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLK 362 (464)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHH
Confidence 222222 2223345443 33 333332222111 11247899999999875222 2334555555554
Q ss_pred cCcccccCCCCccccccceEEEEeeecchhH
Q 043110 216 SRNIASIGEGNEVSNVKRQNLLLSATLNEKV 246 (316)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v 246 (316)
... ..-++.++++| -++..+
T Consensus 363 ~lA----------kel~ipVi~Ls-QLnR~~ 382 (464)
T PRK08840 363 ALA----------KELNVPVVALS-QLNRSL 382 (464)
T ss_pred HHH----------HHhCCeEEEEE-ecCccc
Confidence 311 01156677766 455444
No 426
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=90.62 E-value=2.5 Score=42.11 Aligned_cols=68 Identities=21% Similarity=0.323 Sum_probs=46.6
Q ss_pred EEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhcc
Q 043110 143 GYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216 (316)
Q Consensus 143 ~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~ 216 (316)
....||.....+.+.=++ --+=+=||++.+.+...+... -++++||+|.|.....++=-..+++-|..
T Consensus 380 R~sLGGvrDEAEIRGHRR--TYIGamPGrIiQ~mkka~~~N----Pv~LLDEIDKm~ss~rGDPaSALLEVLDP 447 (782)
T COG0466 380 RISLGGVRDEAEIRGHRR--TYIGAMPGKIIQGMKKAGVKN----PVFLLDEIDKMGSSFRGDPASALLEVLDP 447 (782)
T ss_pred EEecCccccHHHhccccc--cccccCChHHHHHHHHhCCcC----CeEEeechhhccCCCCCChHHHHHhhcCH
Confidence 445577666655543222 244567999999998754433 27899999999887777777777777764
No 427
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=90.57 E-value=4.1 Score=38.60 Aligned_cols=129 Identities=16% Similarity=0.119 Sum_probs=60.1
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCCh
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNR 151 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (316)
.|.=+++.|++|+|||...+ -++..+... .+..+++++.- .-..|+.+++........ ...+..|.-.
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l-~~a~~~a~~-------~g~~vl~~SlE-m~~~~i~~R~~~~~~~v~---~~~~~~g~l~ 261 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFAL-NIAENAAIK-------EGKPVAFFSLE-MSAEQLAMRMLSSESRVD---SQKLRTGKLS 261 (434)
T ss_pred CCeEEEEEeCCCCChHHHHH-HHHHHHHHh-------CCCeEEEEeCc-CCHHHHHHHHHHHhcCCC---HHHhccCCCC
Confidence 34458999999999997543 333333221 12336666533 334455544433322211 1111122111
Q ss_pred HHHH-------HHHhcCCcEEE-eC----cHHHHHHHhcCCccccCceeEEEEecchhhhcCC----cHHHHHHHHHHhc
Q 043110 152 SKEK-------ARLRKGISILV-AT----PGHLLDHLKHTSSFLHTNLRWIIFDEADRILELG----FGKEIEEILDILG 215 (316)
Q Consensus 152 ~~~~-------~~l~~~~~IlV-~T----p~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~----~~~~i~~i~~~l~ 215 (316)
..++ ..+.. ..+.| .+ +..+...++.... -..++++|||=.+.+...+ ....+..+.+.|.
T Consensus 262 ~~~~~~~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~--~~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk 338 (434)
T TIGR00665 262 DEDWEKLTSAAGKLSE-APLYIDDTPGLTITELRAKARRLKR--EHGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLK 338 (434)
T ss_pred HHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHH--hcCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHH
Confidence 2222 22222 23444 33 3444443332111 1247899999988774322 2334555555554
No 428
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=90.55 E-value=0.31 Score=42.92 Aligned_cols=28 Identities=32% Similarity=0.461 Sum_probs=22.2
Q ss_pred HHHHHHHhCCCcEEEEcCCCCchHHHHH
Q 043110 64 AQAIPVILSGRDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 64 ~~~i~~il~g~d~li~a~TGsGKT~~~~ 91 (316)
++++..+..|+++++.+|+|+|||....
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 3444556688999999999999998753
No 429
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=90.51 E-value=0.88 Score=45.63 Aligned_cols=71 Identities=24% Similarity=0.148 Sum_probs=53.3
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHh
Q 043110 58 APTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLH 135 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 135 (316)
.+++-|++++... ...++|.|..|||||.+..--+...+....-. .-.++.++=|+.-|.++.+++..+..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~-----p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVD-----PEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcC-----hHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5789999998765 56799999999999998655555555442111 11388999999999999888888775
No 430
>PRK08006 replicative DNA helicase; Provisional
Probab=90.51 E-value=5.8 Score=38.13 Aligned_cols=151 Identities=18% Similarity=0.150 Sum_probs=70.6
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCCh
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNR 151 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (316)
.|.=+++.|.+|.|||...+ -++..+... .+..++|.+.- .-..|+..++-..... +....+..|.-.
T Consensus 223 ~G~LiiIaarPgmGKTafal-nia~~~a~~-------~g~~V~~fSlE-M~~~ql~~Rlla~~~~---v~~~~i~~~~l~ 290 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAM-NLCENAAML-------QDKPVLIFSLE-MPGEQIMMRMLASLSR---VDQTRIRTGQLD 290 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHH-HHHHHHHHh-------cCCeEEEEecc-CCHHHHHHHHHHHhcC---CCHHHhhcCCCC
Confidence 34448889999999997543 333333221 12336666533 2344444443322211 111111122222
Q ss_pred HHHHHH-------HhcCCcEEEe-----CcHHHHHHHhcCCccccCceeEEEEecchhhhcC----CcHHHHHHHHHHhc
Q 043110 152 SKEKAR-------LRKGISILVA-----TPGHLLDHLKHTSSFLHTNLRWIIFDEADRILEL----GFGKEIEEILDILG 215 (316)
Q Consensus 152 ~~~~~~-------l~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~----~~~~~i~~i~~~l~ 215 (316)
..++.. +....++.|- |+..+...++.... ....++++|||=.+.|-.. .....+..|.+.|+
T Consensus 291 ~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~-~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK 369 (471)
T PRK08006 291 DEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFR-EHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLK 369 (471)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHH
Confidence 222222 2133445553 34444443322111 1125889999999987522 23345666655554
Q ss_pred cCcccccCCCCccccccceEEEEeeecchhH
Q 043110 216 SRNIASIGEGNEVSNVKRQNLLLSATLNEKV 246 (316)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v 246 (316)
.... .-++.++++| -++..+
T Consensus 370 ~lAk----------el~ipVi~Ls-QLnR~~ 389 (471)
T PRK08006 370 ALAK----------ELQVPVVALS-QLNRSL 389 (471)
T ss_pred HHHH----------HhCCeEEEEE-ecCccc
Confidence 3110 1156777776 445544
No 431
>CHL00176 ftsH cell division protein; Validated
Probab=90.50 E-value=2.2 Score=42.54 Aligned_cols=55 Identities=20% Similarity=0.288 Sum_probs=30.0
Q ss_pred ccCCcccCCCCHHHHHHHHHHcC-CCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 043110 33 ASCCFSSLGLDSTLCDQLRERLG-FEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~g-~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~ 90 (316)
...+|++..-.++..+.+.+-.. +..|..++... ....+.+++.+|+|+|||+..
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g---~~~p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVG---AKIPKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhcc---CCCCceEEEECCCCCCHHHHH
Confidence 34677877655555555532211 11222211111 112356999999999999864
No 432
>PRK05748 replicative DNA helicase; Provisional
Probab=90.39 E-value=4.7 Score=38.47 Aligned_cols=129 Identities=17% Similarity=0.137 Sum_probs=60.0
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChH
Q 043110 73 GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRS 152 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (316)
|.-+++.|++|.|||... +-++...... .+..+++++ .-.-..|+..++-..... +....+..|.-..
T Consensus 203 G~livIaarpg~GKT~~a-l~ia~~~a~~-------~g~~v~~fS-lEms~~~l~~R~l~~~~~---v~~~~i~~~~l~~ 270 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFA-LNIAQNVATK-------TDKNVAIFS-LEMGAESLVMRMLCAEGN---IDAQRLRTGQLTD 270 (448)
T ss_pred CceEEEEeCCCCCchHHH-HHHHHHHHHh-------CCCeEEEEe-CCCCHHHHHHHHHHHhcC---CCHHHhhcCCCCH
Confidence 345899999999999754 3344433321 122366664 333445555544322111 1111111222222
Q ss_pred HHHHHH------hcCCcEEEe-Cc----HHHHHHHhcCCccccCceeEEEEecchhhhcCC-----cHHHHHHHHHHh
Q 043110 153 KEKARL------RKGISILVA-TP----GHLLDHLKHTSSFLHTNLRWIIFDEADRILELG-----FGKEIEEILDIL 214 (316)
Q Consensus 153 ~~~~~l------~~~~~IlV~-Tp----~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~-----~~~~i~~i~~~l 214 (316)
.++..+ ..+.++.|. +| ..+...++.... ....++++|||=.+.+-..+ ....+..|.+.|
T Consensus 271 ~e~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~-~~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~L 347 (448)
T PRK05748 271 DDWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQ-EHGGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSL 347 (448)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHH
Confidence 232222 122345543 33 444443332111 10257899999999874221 223455555555
No 433
>CHL00095 clpC Clp protease ATP binding subunit
Probab=90.37 E-value=2.3 Score=43.83 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=15.7
Q ss_pred CcEEEEcCCCCchHHHHH
Q 043110 74 RDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~ 91 (316)
.++++.||+|+|||...-
T Consensus 201 ~n~lL~G~pGvGKTal~~ 218 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAE 218 (821)
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 479999999999998763
No 434
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=90.33 E-value=0.76 Score=45.77 Aligned_cols=52 Identities=23% Similarity=0.247 Sum_probs=34.4
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChH--HHHHHHHHHHHHH
Q 043110 74 RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSE--LCLLVYEILQKLL 134 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~--L~~Q~~~~~~~~~ 134 (316)
+++++.|+||+|||..+..-+.+.+.. |..++++=|-.. |...+...++..+
T Consensus 177 ~H~lv~G~TGsGKT~l~~~l~~q~i~~---------g~~viv~DpKgD~~l~~~~~~~~~~~G 230 (634)
T TIGR03743 177 GHTLVLGTTGVGKTRLAELLITQDIRR---------GDVVIVIDPKGDADLKRRMRAEAKRAG 230 (634)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHc---------CCeEEEEeCCCchHHHHHHHHHHHHhC
Confidence 579999999999998875545555543 233556656543 6666666665554
No 435
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=90.24 E-value=0.33 Score=44.82 Aligned_cols=27 Identities=37% Similarity=0.524 Sum_probs=20.0
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhh
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQ 99 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~ 99 (316)
.+.-+++++|||||||... -.++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 5667999999999999763 44555543
No 436
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.24 E-value=7.8 Score=37.44 Aligned_cols=17 Identities=29% Similarity=0.345 Sum_probs=14.2
Q ss_pred EEEEcCCCCchHHHHHH
Q 043110 76 VLVNAATGTGKTVAYLA 92 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~l 92 (316)
.++.||.|+|||.+..+
T Consensus 41 yLf~Gp~G~GKTtlAr~ 57 (486)
T PRK14953 41 YIFAGPRGTGKTTIARI 57 (486)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999987644
No 437
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=90.21 E-value=0.75 Score=49.11 Aligned_cols=61 Identities=28% Similarity=0.314 Sum_probs=46.5
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhh
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHR 136 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~ 136 (316)
.+.++++.|..|||||.+...-++..+....+ -.--.+|+|+-|+.-+..+..++..-...
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~----~~v~~ILvvTFT~aAa~Emk~RI~~~L~~ 75 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGP----LDVDEILVVTFTKAAAAEMKERIRDRLKE 75 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCC----CChhHeeeeeccHHHHHHHHHHHHHHHHH
Confidence 56799999999999999977777777766321 01224999999999999988877766544
No 438
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=90.06 E-value=0.66 Score=40.68 Aligned_cols=53 Identities=26% Similarity=0.253 Sum_probs=34.7
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL 134 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 134 (316)
.|+.+++.+++|+|||...+=-+.+.+.. |-.+++++ +.+...++.+.+..++
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~---------ge~vlyvs-~~e~~~~l~~~~~~~g 74 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE---------GEPVLYVS-TEESPEELLENARSFG 74 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc---------CCcEEEEE-ecCCHHHHHHHHHHcC
Confidence 56789999999999998643323332222 33377776 5566677777776654
No 439
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=90.02 E-value=11 Score=35.01 Aligned_cols=63 Identities=19% Similarity=0.276 Sum_probs=39.3
Q ss_pred ceeEEEEecchhhhcCC--cHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcC
Q 043110 186 NLRWIIFDEADRILELG--FGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLD 263 (316)
Q Consensus 186 ~l~~lViDEad~l~~~~--~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~ 263 (316)
..-++|+|-||.+-|++ ..+.+-.+-+.++. ..=.+++|+++++..- ..+.....|+.+.+.
T Consensus 115 ~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~---------------~~i~iils~~~~e~~y-~~n~g~~~i~~l~fP 178 (438)
T KOG2543|consen 115 QKVFLILDNADALRDMDAILLQCLFRLYELLNE---------------PTIVIILSAPSCEKQY-LINTGTLEIVVLHFP 178 (438)
T ss_pred ceEEEEEcCHHhhhccchHHHHHHHHHHHHhCC---------------CceEEEEeccccHHHh-hcccCCCCceEEecC
Confidence 34589999999998875 33445555555554 4456778888875432 223345566666655
Q ss_pred C
Q 043110 264 E 264 (316)
Q Consensus 264 ~ 264 (316)
.
T Consensus 179 ~ 179 (438)
T KOG2543|consen 179 Q 179 (438)
T ss_pred C
Confidence 4
No 440
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=89.96 E-value=3.8 Score=37.75 Aligned_cols=30 Identities=27% Similarity=0.478 Sum_probs=20.3
Q ss_pred HhCCC---cEEEEcCCCCchHHHHHHHHHHHhhh
Q 043110 70 ILSGR---DVLVNAATGTGKTVAYLAPIINHLQS 100 (316)
Q Consensus 70 il~g~---d~li~a~TGsGKT~~~~lp~l~~l~~ 100 (316)
+.+|+ -+++.||.|+|||.... .+...+..
T Consensus 39 ~~~grl~ha~L~~G~~G~GKttlA~-~lA~~Llc 71 (351)
T PRK09112 39 YREGKLHHALLFEGPEGIGKATLAF-HLANHILS 71 (351)
T ss_pred HHcCCCCeeEeeECCCCCCHHHHHH-HHHHHHcC
Confidence 33554 38999999999997653 34444444
No 441
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=89.96 E-value=0.49 Score=40.44 Aligned_cols=14 Identities=29% Similarity=0.676 Sum_probs=12.4
Q ss_pred EEEEcCCCCchHHH
Q 043110 76 VLVNAATGTGKTVA 89 (316)
Q Consensus 76 ~li~a~TGsGKT~~ 89 (316)
+++.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999986
No 442
>PRK08506 replicative DNA helicase; Provisional
Probab=89.95 E-value=4 Score=39.23 Aligned_cols=113 Identities=13% Similarity=0.081 Sum_probs=54.2
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChH
Q 043110 73 GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRS 152 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (316)
|.=+++.|.||.|||...+- ++..+... +..+++++.- .-..|+..++-....... ...+..|.-..
T Consensus 192 G~LivIaarpg~GKT~fal~-ia~~~~~~--------g~~V~~fSlE-Ms~~ql~~Rlla~~s~v~---~~~i~~~~l~~ 258 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLN-MALKALNQ--------DKGVAFFSLE-MPAEQLMLRMLSAKTSIP---LQNLRTGDLDD 258 (472)
T ss_pred CceEEEEcCCCCChHHHHHH-HHHHHHhc--------CCcEEEEeCc-CCHHHHHHHHHHHhcCCC---HHHHhcCCCCH
Confidence 34589999999999976543 33333321 2336666533 345555554433222111 11111122122
Q ss_pred HHHH-------HHhcCCcEEEe-----CcHHHHHHHhcCCccccCceeEEEEecchhhhc
Q 043110 153 KEKA-------RLRKGISILVA-----TPGHLLDHLKHTSSFLHTNLRWIIFDEADRILE 200 (316)
Q Consensus 153 ~~~~-------~l~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~ 200 (316)
.++. .+.. ..+.|- |+..+...++.... ....++++|||=.+.|..
T Consensus 259 ~e~~~~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~-~~~~~~lvvIDyLql~~~ 316 (472)
T PRK08506 259 DEWERLSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKS-QHPEIGLAVIDYLQLMSG 316 (472)
T ss_pred HHHHHHHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEcChhhccC
Confidence 2222 2222 344443 34444444432111 112578999999987753
No 443
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=89.95 E-value=1.8 Score=37.91 Aligned_cols=18 Identities=39% Similarity=0.556 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
-+-++..+|+|+|||+.+
T Consensus 205 PKGvLmYGPPGTGKTlmA 222 (424)
T KOG0652|consen 205 PKGVLMYGPPGTGKTLMA 222 (424)
T ss_pred CCceEeeCCCCCcHHHHH
Confidence 357999999999999875
No 444
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=89.84 E-value=2.2 Score=36.35 Aligned_cols=45 Identities=16% Similarity=0.060 Sum_probs=26.6
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCCh
Q 043110 73 GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTS 120 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~ 120 (316)
|+-+.+.+++|+|||...+.-+...+... .. .+....++++....
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~-~~--~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPG-EL--GGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhccc-cc--CCCcceEEEEecCC
Confidence 45689999999999987654333332221 00 01124578877643
No 445
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.83 E-value=3.5 Score=40.97 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=19.7
Q ss_pred CceeEEEEecchhhhcCCcHHHHHHHHHHhcc
Q 043110 185 TNLRWIIFDEADRILELGFGKEIEEILDILGS 216 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~ 216 (316)
.+-+++||||+|.|.. ...+.+++.+..
T Consensus 126 ~~~KVvIIdEad~Lt~----~a~naLLK~LEe 153 (620)
T PRK14954 126 GRYRVYIIDEVHMLST----AAFNAFLKTLEE 153 (620)
T ss_pred CCCEEEEEeChhhcCH----HHHHHHHHHHhC
Confidence 4678999999999864 334556665543
No 446
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=89.77 E-value=3.5 Score=40.20 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=16.3
Q ss_pred EEEEcCCCCchHHHHHHHHHHHh
Q 043110 76 VLVNAATGTGKTVAYLAPIINHL 98 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~lp~l~~l 98 (316)
.++.||.|+|||.++.. +...+
T Consensus 39 yLf~Gp~G~GKTt~Ar~-LAk~L 60 (535)
T PRK08451 39 YLFSGLRGSGKTSSARI-FARAL 60 (535)
T ss_pred EEEECCCCCcHHHHHHH-HHHHh
Confidence 58999999999987644 33333
No 447
>PRK10436 hypothetical protein; Provisional
Probab=89.63 E-value=0.56 Score=44.82 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=25.2
Q ss_pred HHHHHHHHHHh--CCCcEEEEcCCCCchHHHHHHHHHHHhh
Q 043110 61 KVQAQAIPVIL--SGRDVLVNAATGTGKTVAYLAPIINHLQ 99 (316)
Q Consensus 61 ~~Q~~~i~~il--~g~d~li~a~TGsGKT~~~~lp~l~~l~ 99 (316)
+-|.+.+..++ .+.-+++.+|||||||... ..++..+.
T Consensus 204 ~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~ 243 (462)
T PRK10436 204 PAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLN 243 (462)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhC
Confidence 44555555444 3345999999999999864 34555553
No 448
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=89.52 E-value=0.26 Score=49.15 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.2
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHH
Q 043110 74 RDVLVNAATGTGKTVAYLAPIINH 97 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~lp~l~~ 97 (316)
.++++.||||||||.++++|-+-.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~ 163 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLT 163 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhc
Confidence 479999999999999999997654
No 449
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.37 E-value=3.3 Score=38.97 Aligned_cols=70 Identities=20% Similarity=0.195 Sum_probs=44.3
Q ss_pred ceeEEEEecchhhhcCC--------cHHHHHHHHHHhccCcccccCCCCccccccceEEEEeee-cchhHHHHHHHhcCC
Q 043110 186 NLRWIIFDEADRILELG--------FGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSAT-LNEKVNHLTKISLET 256 (316)
Q Consensus 186 ~l~~lViDEad~l~~~~--------~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT-~~~~v~~~~~~~l~~ 256 (316)
...+++|||+|.++..- .....+.++..... ...++-++++++|| +|..+++-++..+..
T Consensus 245 qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~-----------~s~~~drvlvigaTN~P~e~Dea~~Rrf~k 313 (428)
T KOG0740|consen 245 QPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGK-----------NSAPDDRVLVIGATNRPWELDEAARRRFVK 313 (428)
T ss_pred CCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccc-----------cCCCCCeEEEEecCCCchHHHHHHHHHhhc
Confidence 34577899999988531 22333333333321 22334588888888 588888887777777
Q ss_pred CEEEEcCCCC
Q 043110 257 PVLIGLDEKK 266 (316)
Q Consensus 257 p~~i~~~~~~ 266 (316)
-.+|...+.+
T Consensus 314 r~yiplPd~e 323 (428)
T KOG0740|consen 314 RLYIPLPDYE 323 (428)
T ss_pred eeeecCCCHH
Confidence 7777666553
No 450
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=89.33 E-value=5.6 Score=39.56 Aligned_cols=61 Identities=25% Similarity=0.226 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHhCC-------CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHH
Q 043110 60 TKVQAQAIPVILSG-------RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYE 128 (316)
Q Consensus 60 ~~~Q~~~i~~il~g-------~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~ 128 (316)
|--|.+|+-.+... --+-+.|.-|-||+.+.-+++...+.-. ..-+-|-+|+-+=..-+++
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~G--------ysnIyvtSPspeNlkTlFe 322 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFG--------YSNIYVTSPSPENLKTLFE 322 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcC--------cceEEEcCCChHHHHHHHH
Confidence 66788776554421 2478899999999999888887777542 1226667799776554444
No 451
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=89.17 E-value=8.5 Score=36.80 Aligned_cols=18 Identities=33% Similarity=0.337 Sum_probs=15.2
Q ss_pred cEEEEcCCCCchHHHHHH
Q 043110 75 DVLVNAATGTGKTVAYLA 92 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~l 92 (316)
..++.||.|+|||.++..
T Consensus 41 a~Lf~Gp~G~GKtt~A~~ 58 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARI 58 (451)
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 478999999999987644
No 452
>PRK08760 replicative DNA helicase; Provisional
Probab=89.17 E-value=4.8 Score=38.73 Aligned_cols=129 Identities=19% Similarity=0.106 Sum_probs=60.5
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChH
Q 043110 73 GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRS 152 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (316)
|.=+++.|.+|.|||...+ -++..+... .+..++|.+.- .-..|+..++.......... .+..|.-..
T Consensus 229 G~LivIaarPg~GKTafal-~iA~~~a~~-------~g~~V~~fSlE-Ms~~ql~~Rl~a~~s~i~~~---~i~~g~l~~ 296 (476)
T PRK08760 229 TDLIILAARPAMGKTTFAL-NIAEYAAIK-------SKKGVAVFSME-MSASQLAMRLISSNGRINAQ---RLRTGALED 296 (476)
T ss_pred CceEEEEeCCCCChhHHHH-HHHHHHHHh-------cCCceEEEecc-CCHHHHHHHHHHhhCCCcHH---HHhcCCCCH
Confidence 3448999999999997644 333333221 12236666533 23445555554433221111 111222222
Q ss_pred HHHHHH------hcCCcEEEe-----CcHHHHHHHhcCCccccCceeEEEEecchhhhcC----CcHHHHHHHHHHhc
Q 043110 153 KEKARL------RKGISILVA-----TPGHLLDHLKHTSSFLHTNLRWIIFDEADRILEL----GFGKEIEEILDILG 215 (316)
Q Consensus 153 ~~~~~l------~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~----~~~~~i~~i~~~l~ 215 (316)
.++..+ .....+.|. |++.+...++... .-..++++|||=.+.|... .....+..|.+.|+
T Consensus 297 ~e~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~--~~~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK 372 (476)
T PRK08760 297 EDWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLK--REHDLGLIVIDYLQLMSVPGNSENRATEISEISRSLK 372 (476)
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHH--HhcCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHH
Confidence 222221 112345444 3344444333211 1135789999999877422 22334555555443
No 453
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=89.08 E-value=1.2 Score=44.22 Aligned_cols=54 Identities=22% Similarity=0.237 Sum_probs=38.4
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCCh--HHHHHHHHHHHHHHh
Q 043110 73 GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTS--ELCLLVYEILQKLLH 135 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~--~L~~Q~~~~~~~~~~ 135 (316)
..+.++.++||+|||..+.+-+.+.+.. +..++++=|-. ++...++..++..+.
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~~---------g~~vi~fDpkgD~el~~~~~~~~~~~GR 235 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIRR---------GDVVIVFDPKGDADLLKRMYAEAKRAGR 235 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHHc---------CCeEEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 3579999999999999987766666643 33477777765 566666666666654
No 454
>PRK07004 replicative DNA helicase; Provisional
Probab=88.94 E-value=2.1 Score=41.07 Aligned_cols=131 Identities=17% Similarity=0.110 Sum_probs=60.1
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCCh
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNR 151 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (316)
.|.=+++.|.+|+|||...+ -+...+... .+..+++.+. -.-..|+..++-.... .+....+..|.-.
T Consensus 212 ~g~liviaarpg~GKT~~al-~ia~~~a~~-------~~~~v~~fSl-EM~~~ql~~R~la~~~---~v~~~~i~~g~l~ 279 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSM-NIGEYVAVE-------YGLPVAVFSM-EMPGTQLAMRMLGSVG---RLDQHRMRTGRLT 279 (460)
T ss_pred CCceEEEEeCCCCCccHHHH-HHHHHHHHH-------cCCeEEEEeC-CCCHHHHHHHHHHhhc---CCCHHHHhcCCCC
Confidence 34458899999999997643 333333221 1223555542 2234444444322111 1111111122222
Q ss_pred HHHHHHHh------cCCcEEEe-C----cHHHHHHHhcCCccccCceeEEEEecchhhhcC----CcHHHHHHHHHHhc
Q 043110 152 SKEKARLR------KGISILVA-T----PGHLLDHLKHTSSFLHTNLRWIIFDEADRILEL----GFGKEIEEILDILG 215 (316)
Q Consensus 152 ~~~~~~l~------~~~~IlV~-T----p~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~----~~~~~i~~i~~~l~ 215 (316)
..++..+. ...++.|. + +..+....+.... ....++++|||=.+.|... .....+..|.+.|+
T Consensus 280 ~~e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~-~~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK 357 (460)
T PRK07004 280 DEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLAR-QCGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLK 357 (460)
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHH
Confidence 23332221 23455553 3 3344333322111 1124789999999887532 23344556655554
No 455
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=88.79 E-value=0.48 Score=44.12 Aligned_cols=52 Identities=25% Similarity=0.349 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHcCCCCCcHHHHHHHHHHh----CCCcEEEEcCCCCchHHHHHHHH
Q 043110 41 GLDSTLCDQLRERLGFEAPTKVQAQAIPVIL----SGRDVLVNAATGTGKTVAYLAPI 94 (316)
Q Consensus 41 ~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il----~g~d~li~a~TGsGKT~~~~lp~ 94 (316)
+++.+++..+ +.||.. -+.+|..++..+. .|.-+.+.+++|+|||..+-+-+
T Consensus 375 ~lp~e~~~Il-eSFGv~-~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~ 430 (593)
T COG2401 375 GLPNEFQDIL-ESFGVR-QRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMIL 430 (593)
T ss_pred cCChHHHHHH-HHhcch-heeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHH
Confidence 7999999999 778887 4677777765543 45568999999999998754433
No 456
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.79 E-value=4.8 Score=40.09 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=14.4
Q ss_pred EEEEcCCCCchHHHHHH
Q 043110 76 VLVNAATGTGKTVAYLA 92 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~l 92 (316)
++++||.|+|||.+..+
T Consensus 42 yLf~Gp~G~GKtt~A~~ 58 (614)
T PRK14971 42 YLFCGPRGVGKTTCARI 58 (614)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 79999999999996543
No 457
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=88.75 E-value=0.67 Score=45.60 Aligned_cols=44 Identities=34% Similarity=0.453 Sum_probs=28.5
Q ss_pred HHcCCCCCcHHHHHHHHHHhC--CCcEEEEcCCCCchHHHHHHHHHHHhh
Q 043110 52 ERLGFEAPTKVQAQAIPVILS--GRDVLVNAATGTGKTVAYLAPIINHLQ 99 (316)
Q Consensus 52 ~~~g~~~p~~~Q~~~i~~il~--g~d~li~a~TGsGKT~~~~lp~l~~l~ 99 (316)
..+|+ .+-|.+.+..++. +.-++++||||||||... ..++..+.
T Consensus 296 ~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~ 341 (564)
T TIGR02538 296 DKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILN 341 (564)
T ss_pred HHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhC
Confidence 34555 3556666655544 345899999999999874 44555553
No 458
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=88.65 E-value=0.88 Score=41.08 Aligned_cols=20 Identities=35% Similarity=0.674 Sum_probs=17.4
Q ss_pred HhCCCcEEEEcCCCCchHHH
Q 043110 70 ILSGRDVLVNAATGTGKTVA 89 (316)
Q Consensus 70 il~g~d~li~a~TGsGKT~~ 89 (316)
+..|+++++.++||||||..
T Consensus 141 v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH
Confidence 34678999999999999975
No 459
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.62 E-value=2.8 Score=37.87 Aligned_cols=98 Identities=18% Similarity=0.241 Sum_probs=54.2
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCee-EEEEe-----------CChHHHHHHHHHHHHHHhhcCCce
Q 043110 74 RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF-ALVLV-----------PTSELCLLVYEILQKLLHRFRWIV 141 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~-~lil~-----------Pt~~L~~Q~~~~~~~~~~~~~~~~ 141 (316)
+=+++.||+|+|||... -++.+.+.-+.. +...+ .+|=. -+--|+.++++.++.+...-+..+
T Consensus 178 RliLlhGPPGTGKTSLC-KaLaQkLSIR~~----~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lV 252 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLC-KALAQKLSIRTN----DRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLV 252 (423)
T ss_pred eEEEEeCCCCCChhHHH-HHHHHhheeeec----CccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEE
Confidence 44899999999999653 445555533211 11222 33333 344577778888888877655444
Q ss_pred eEEee-------------CCC-C---------hHHHHHHHhcCCcEEEeCcHHHHHHH
Q 043110 142 PGYVM-------------GGG-N---------RSKEKARLRKGISILVATPGHLLDHL 176 (316)
Q Consensus 142 ~~~~~-------------~~~-~---------~~~~~~~l~~~~~IlV~Tp~~l~~~l 176 (316)
+..+- .+. . .-.|.+++...++++|-|...+.+.+
T Consensus 253 fvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~si 310 (423)
T KOG0744|consen 253 FVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSI 310 (423)
T ss_pred EEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHH
Confidence 43321 011 0 12345556666777776665555544
No 460
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=88.51 E-value=3.9 Score=41.70 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=14.6
Q ss_pred cEEEEcCCCCchHHHHH
Q 043110 75 DVLVNAATGTGKTVAYL 91 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~ 91 (316)
.+++.||||+|||..+-
T Consensus 490 ~~Lf~GP~GvGKT~lAk 506 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTV 506 (758)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48999999999998753
No 461
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=88.14 E-value=0.37 Score=42.71 Aligned_cols=19 Identities=47% Similarity=0.665 Sum_probs=16.9
Q ss_pred hCCCcEEEEcCCCCchHHH
Q 043110 71 LSGRDVLVNAATGTGKTVA 89 (316)
Q Consensus 71 l~g~d~li~a~TGsGKT~~ 89 (316)
..++.++++||+|+|||..
T Consensus 31 ~~~~pvLl~G~~GtGKT~l 49 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSL 49 (272)
T ss_dssp HCTEEEEEESSTTSSHHHH
T ss_pred HcCCcEEEECCCCCchhHH
Confidence 4677899999999999986
No 462
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=88.06 E-value=0.52 Score=31.56 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=15.3
Q ss_pred CCCcEEEEcCCCCchHHH
Q 043110 72 SGRDVLVNAATGTGKTVA 89 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~ 89 (316)
.|...++.+++|+|||..
T Consensus 22 ~g~~tli~G~nGsGKSTl 39 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTL 39 (62)
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 345799999999999976
No 463
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.06 E-value=6.9 Score=37.84 Aligned_cols=18 Identities=28% Similarity=0.556 Sum_probs=15.7
Q ss_pred CceeEEEEecchhhhcCC
Q 043110 185 TNLRWIIFDEADRILELG 202 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~ 202 (316)
+.+..+|+|+..+|+|+.
T Consensus 597 S~lsiivvDdiErLiD~v 614 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYV 614 (744)
T ss_pred CcceEEEEcchhhhhccc
Confidence 468899999999999983
No 464
>PRK10689 transcription-repair coupling factor; Provisional
Probab=87.81 E-value=2.9 Score=44.65 Aligned_cols=79 Identities=18% Similarity=0.144 Sum_probs=55.7
Q ss_pred CeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHH---HHh-cCCcEEEeCcHHHHHHHhcCCccccC
Q 043110 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA---RLR-KGISILVATPGHLLDHLKHTSSFLHT 185 (316)
Q Consensus 110 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~-~~~~IlV~Tp~~l~~~l~~~~~~~~~ 185 (316)
+.+++|++|+++-+..+++.+++.. ....+.+++|+.+...... .+. ...+|+|||. + +. .++++.
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~---p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd--I---ie--rGIDIP 878 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELV---PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT--I---IE--TGIDIP 878 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhC---CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc--h---hh--cccccc
Confidence 4569999999998888888777654 2345666777766544322 223 3589999994 2 22 567778
Q ss_pred ceeEEEEecchhh
Q 043110 186 NLRWIIFDEADRI 198 (316)
Q Consensus 186 ~l~~lViDEad~l 198 (316)
+++++|++.+|+.
T Consensus 879 ~v~~VIi~~ad~f 891 (1147)
T PRK10689 879 TANTIIIERADHF 891 (1147)
T ss_pred cCCEEEEecCCCC
Confidence 9999999999863
No 465
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=87.79 E-value=4 Score=38.17 Aligned_cols=19 Identities=37% Similarity=0.462 Sum_probs=16.8
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.|+-+++.+|+|+|||...
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~ 185 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLL 185 (415)
T ss_pred CCCEEEEECCCCCChhHHH
Confidence 7888999999999999753
No 466
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=87.78 E-value=1.5 Score=43.06 Aligned_cols=32 Identities=28% Similarity=0.264 Sum_probs=25.5
Q ss_pred CceeEEEEecchhhhcCCcHHHHHHHHHHhcc
Q 043110 185 TNLRWIIFDEADRILELGFGKEIEEILDILGS 216 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~ 216 (316)
++-.++|+|||-.-+|..-+..+...+..+.+
T Consensus 482 ~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~ 513 (567)
T COG1132 482 RNPPILILDEATSALDTETEALIQDALKKLLK 513 (567)
T ss_pred cCCCEEEEeccccccCHHhHHHHHHHHHHHhc
Confidence 34579999999999998888878777776554
No 467
>PRK05636 replicative DNA helicase; Provisional
Probab=87.69 E-value=3.2 Score=40.28 Aligned_cols=17 Identities=35% Similarity=0.518 Sum_probs=14.0
Q ss_pred cEEEEcCCCCchHHHHH
Q 043110 75 DVLVNAATGTGKTVAYL 91 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~ 91 (316)
=+++.|.+|.|||...+
T Consensus 267 Liiiaarpg~GKT~~al 283 (505)
T PRK05636 267 MIIVAARPGVGKSTLAL 283 (505)
T ss_pred eEEEEeCCCCCHHHHHH
Confidence 36889999999997654
No 468
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=87.54 E-value=0.44 Score=47.54 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=21.9
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHh
Q 043110 74 RDVLVNAATGTGKTVAYLAPIINHL 98 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~lp~l~~l 98 (316)
.++++.||||||||.++++|-+-..
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~ 169 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTW 169 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhC
Confidence 5799999999999999999976643
No 469
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=87.49 E-value=4.6 Score=41.16 Aligned_cols=16 Identities=38% Similarity=0.461 Sum_probs=13.9
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
.+++.||||+|||..+
T Consensus 486 ~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 486 SFLFTGPTGVGKTELA 501 (731)
T ss_pred eEEEECCCCccHHHHH
Confidence 3799999999999765
No 470
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=87.47 E-value=2.7 Score=34.65 Aligned_cols=62 Identities=21% Similarity=0.236 Sum_probs=34.6
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCC--CCCCeeEEEEeCChHHHHHHHHHHHHHHh
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRID--RSSGTFALVLVPTSELCLLVYEILQKLLH 135 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~--~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 135 (316)
.|.-+++.|++|+|||...+- +...+....+... ...+.+++++..-.. ..++.+++..+..
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~-l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQ-LAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHH-HHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHH-HHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 456699999999999986543 3333333211111 113456888876655 5677777777664
No 471
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=87.39 E-value=0.94 Score=39.27 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=17.3
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHh
Q 043110 75 DVLVNAATGTGKTVAYLAPIINHL 98 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~lp~l~~l 98 (316)
.+++.|++|||||.. ++-++..+
T Consensus 15 r~viIG~sGSGKT~l-i~~lL~~~ 37 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTL-IKSLLYYL 37 (241)
T ss_pred eEEEECCCCCCHHHH-HHHHHHhh
Confidence 689999999999974 44455444
No 472
>PRK09165 replicative DNA helicase; Provisional
Probab=87.38 E-value=7.8 Score=37.56 Aligned_cols=120 Identities=9% Similarity=0.059 Sum_probs=55.5
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHhhhc-CCCC------CCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEee
Q 043110 74 RDVLVNAATGTGKTVAYLAPIINHLQSY-SPRI------DRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVM 146 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~lp~l~~l~~~-~~~~------~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~ 146 (316)
.=+++.|+||.|||...+- +...+... .... ....|..++|++. -.-..|+..++......... ..+.
T Consensus 218 ~livIaarpg~GKT~~al~-ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSl-EMs~~ql~~R~la~~s~v~~---~~i~ 292 (497)
T PRK09165 218 DLIILAGRPSMGKTALATN-IAFNAAKAYRREAQPDGSKKAVNGGVVGFFSL-EMSAEQLATRILSEQSEISS---SKIR 292 (497)
T ss_pred ceEEEEeCCCCChHHHHHH-HHHHHHHhhcccccccccccccCCCeEEEEeC-cCCHHHHHHHHHHHhcCCCH---HHHh
Confidence 3489999999999976533 33333221 1000 0012445666653 33345555554433222111 1111
Q ss_pred CCCChHHHHHHHh------cCCcEEEe-----CcHHHHHHHhcCCccccCceeEEEEecchhhhc
Q 043110 147 GGGNRSKEKARLR------KGISILVA-----TPGHLLDHLKHTSSFLHTNLRWIIFDEADRILE 200 (316)
Q Consensus 147 ~~~~~~~~~~~l~------~~~~IlV~-----Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~ 200 (316)
.|.-...++..+. ...++.|- |+..+...++.... -..++++|||=.+.|..
T Consensus 293 ~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~--~~~~~lvvIDyLqli~~ 355 (497)
T PRK09165 293 RGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR--QHGLDLLVVDYLQLIRG 355 (497)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHH--hcCCCEEEEcchHhccC
Confidence 2222222222222 12345543 33444444432111 13578999999997753
No 473
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=87.38 E-value=3.7 Score=35.86 Aligned_cols=19 Identities=32% Similarity=0.326 Sum_probs=16.7
Q ss_pred hCCCcEEEEcCCCCchHHH
Q 043110 71 LSGRDVLVNAATGTGKTVA 89 (316)
Q Consensus 71 l~g~d~li~a~TGsGKT~~ 89 (316)
-.|+.+++.++.|+|||..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3788999999999999964
No 474
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=87.33 E-value=1.2 Score=40.94 Aligned_cols=43 Identities=21% Similarity=0.348 Sum_probs=26.4
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHH
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSEL 122 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L 122 (316)
.+..+++++|||||||... -.++..+... .+.+++.+-...|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i~~~-------~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYINKN-------AAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhhCcC-------CCCEEEEEcCChhh
Confidence 4567999999999999864 3344444321 12345555555554
No 475
>PRK13695 putative NTPase; Provisional
Probab=87.23 E-value=3.1 Score=33.86 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=14.4
Q ss_pred cEEEEcCCCCchHHHHH
Q 043110 75 DVLVNAATGTGKTVAYL 91 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~ 91 (316)
.+.+.++.|+|||....
T Consensus 2 ~i~ltG~~G~GKTTll~ 18 (174)
T PRK13695 2 KIGITGPPGVGKTTLVL 18 (174)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998754
No 476
>PRK05595 replicative DNA helicase; Provisional
Probab=87.23 E-value=3.1 Score=39.67 Aligned_cols=129 Identities=15% Similarity=0.089 Sum_probs=58.8
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChH
Q 043110 73 GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRS 152 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (316)
|.=+++.|.||.|||...+ -+...+... .|..+++++.- .-..|+..++........ ...+..|.-..
T Consensus 201 g~liviaarpg~GKT~~al-~ia~~~a~~-------~g~~vl~fSlE-ms~~~l~~R~~a~~~~v~---~~~~~~~~l~~ 268 (444)
T PRK05595 201 GDMILIAARPSMGKTTFAL-NIAEYAALR-------EGKSVAIFSLE-MSKEQLAYKLLCSEANVD---MLRLRTGNLED 268 (444)
T ss_pred CcEEEEEecCCCChHHHHH-HHHHHHHHH-------cCCcEEEEecC-CCHHHHHHHHHHHhcCCC---HHHHhcCCCCH
Confidence 3347889999999997643 333333211 13337776543 234455444333222111 11111222122
Q ss_pred HHHHHHhc------CCcEEEe-Cc----HHHHHHHhcCCccccCceeEEEEecchhhhcCC----cHHHHHHHHHHhc
Q 043110 153 KEKARLRK------GISILVA-TP----GHLLDHLKHTSSFLHTNLRWIIFDEADRILELG----FGKEIEEILDILG 215 (316)
Q Consensus 153 ~~~~~l~~------~~~IlV~-Tp----~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~----~~~~i~~i~~~l~ 215 (316)
.++..+.. ...+.|- +| ..+...++... .-..++++|||=.+.|...+ ....+..|.+.|+
T Consensus 269 ~e~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~--~~~~~~~vvIDylql~~~~~~~~~r~~~v~~is~~LK 344 (444)
T PRK05595 269 KDWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLK--IEHGIDMILIDYLQLMSGGKGSESRQQEVSEISRSIK 344 (444)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH--HhcCCCEEEEeHHHhccCCCCCccHHHHHHHHHHHHH
Confidence 22222221 1234443 32 33333332211 11358899999999876332 2234555544443
No 477
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=87.19 E-value=1.9 Score=46.18 Aligned_cols=59 Identities=20% Similarity=0.137 Sum_probs=44.5
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhh
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHR 136 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~ 136 (316)
-.+++++.|+.|||||...+--++..+.... ..-.+++|+-|+.-|.++.+++...+..
T Consensus 9 p~~~~~~~a~agsgkt~~l~~~~~~~~~~~~------~~~~i~~~t~t~~aa~em~~Ri~~~L~~ 67 (1141)
T TIGR02784 9 PKTSAWVSANAGSGKTHVLTQRVIRLLLNGV------PPSKILCLTYTKAAAAEMQNRVFDRLGE 67 (1141)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHcCC------CCCeEEEEecCHHHHHHHHHHHHHHHHH
Confidence 3567999999999999987666666654421 1235999999999999998887776643
No 478
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=87.12 E-value=2.9 Score=36.69 Aligned_cols=116 Identities=18% Similarity=0.248 Sum_probs=58.4
Q ss_pred HHHHHHhCC-----CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCC
Q 043110 65 QAIPVILSG-----RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRW 139 (316)
Q Consensus 65 ~~i~~il~g-----~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~ 139 (316)
..++.++.| .=+=++++.|+|||-..+--++....... ..+.+.+++|+.-....- .+++.+++..++
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~---~~g~~~~vvyidTe~~f~---~~Rl~~i~~~~~- 97 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEE---IGGLGGKVVYIDTEGTFS---PERLQQIAERFG- 97 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGC---TTSSSSEEEEEESSSSS----HHHHHHHHHHTT-
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccc---cccCCCceEEEeCCCCCC---HHHHHHHhhccc-
Confidence 367777755 33678999999999875443333322211 123356799997544333 223333333221
Q ss_pred ceeEEeeCCCChHHHHHHHhcCCcE-EEeCcHHHHHHHhcCCc-cccCceeEEEEecchhhhc
Q 043110 140 IVPGYVMGGGNRSKEKARLRKGISI-LVATPGHLLDHLKHTSS-FLHTNLRWIIFDEADRILE 200 (316)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~l~~~~~I-lV~Tp~~l~~~l~~~~~-~~~~~l~~lViDEad~l~~ 200 (316)
.+.. .+..+..+ -+.+.+.+...+..... +.-.++++||||-+-.++.
T Consensus 98 ---------~~~~----~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr 147 (256)
T PF08423_consen 98 ---------LDPE----EILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAALFR 147 (256)
T ss_dssp ---------S-HH----HHHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHH
T ss_pred ---------cccc----hhhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHHHH
Confidence 1111 11222111 12344455444433211 1124799999999988763
No 479
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=87.11 E-value=1.2 Score=37.30 Aligned_cols=22 Identities=41% Similarity=0.706 Sum_probs=16.3
Q ss_pred EEEEcCCCCchHHHHHHHHHHHh
Q 043110 76 VLVNAATGTGKTVAYLAPIINHL 98 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~lp~l~~l 98 (316)
+++.+|||||||... -.++..+
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHh
Confidence 689999999999874 3344444
No 480
>PRK06321 replicative DNA helicase; Provisional
Probab=87.03 E-value=11 Score=36.15 Aligned_cols=126 Identities=13% Similarity=0.121 Sum_probs=59.5
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHH
Q 043110 75 DVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKE 154 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (316)
=+++.|.+|.|||...+ -+...+... .+..+++.+. -.-..|+..++-..... +...-+..+.-...+
T Consensus 228 LiiiaarPgmGKTafal-~ia~~~a~~-------~g~~v~~fSL-EMs~~ql~~Rlla~~s~---v~~~~i~~~~l~~~e 295 (472)
T PRK06321 228 LMILAARPAMGKTALAL-NIAENFCFQ-------NRLPVGIFSL-EMTVDQLIHRIICSRSE---VESKKISVGDLSGRD 295 (472)
T ss_pred EEEEEeCCCCChHHHHH-HHHHHHHHh-------cCCeEEEEec-cCCHHHHHHHHHHhhcC---CCHHHhhcCCCCHHH
Confidence 37889999999997643 344444321 1223555542 22344444444322111 111111122222223
Q ss_pred HH-------HHhcCCcEEEe-----CcHHHHHHHhcCCccccCceeEEEEecchhhhcCC-------cHHHHHHHHHHhc
Q 043110 155 KA-------RLRKGISILVA-----TPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELG-------FGKEIEEILDILG 215 (316)
Q Consensus 155 ~~-------~l~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~-------~~~~i~~i~~~l~ 215 (316)
+. .+.. ..+.|- |...+..-++.... -..++++|||=.+.|...+ ....+..|.+.|+
T Consensus 296 ~~~~~~a~~~l~~-~~~~idd~~~~ti~~i~~~~r~~~~--~~~~~lvvIDyLql~~~~~~~~~~~~r~~ei~~Isr~LK 372 (472)
T PRK06321 296 FQRIVSVVNEMQE-HTLLIDDQPGLKITDLRARARRMKE--SYDIQFLIIDYLQLLSGSGNLRNSESRQTEISEISRMLK 372 (472)
T ss_pred HHHHHHHHHHHHc-CCEEEeCCCCCCHHHHHHHHHHHHH--hcCCCEEEEcchHHcCCCCccCCcchHHHHHHHHHHHHH
Confidence 32 2222 345554 33344443332111 1357899999998875322 2244555555554
No 481
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=86.89 E-value=2.2 Score=39.09 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=36.0
Q ss_pred cCCCCCcHHHHHHHHHHh-CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHH
Q 043110 54 LGFEAPTKVQAQAIPVIL-SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELC 123 (316)
Q Consensus 54 ~g~~~p~~~Q~~~i~~il-~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~ 123 (316)
.|+ +++.+...+..+. .++++++.++||+|||... -.++..+.. ..+.+++-.+.||.
T Consensus 160 ~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i~~---------~~riv~iEd~~El~ 218 (340)
T TIGR03819 160 SGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALVAP---------DERIVLVEDAAELR 218 (340)
T ss_pred cCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccCCC---------CCcEEEECCcceec
Confidence 354 3456666665544 5679999999999999753 223332211 23367777777773
No 482
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=86.87 E-value=7.1 Score=35.67 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=17.0
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHhh
Q 043110 75 DVLVNAATGTGKTVAYLAPIINHLQ 99 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~lp~l~~l~ 99 (316)
.+++.||.|+|||.... .+...+.
T Consensus 38 ~~Ll~G~~G~GKt~~a~-~la~~l~ 61 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIAR-IFAKALN 61 (355)
T ss_pred EEEEECCCCCCHHHHHH-HHHHHhc
Confidence 47899999999997653 3444443
No 483
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=86.84 E-value=3.2 Score=37.07 Aligned_cols=60 Identities=20% Similarity=0.238 Sum_probs=38.7
Q ss_pred eeEEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcC
Q 043110 187 LRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLE 255 (316)
Q Consensus 187 l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~ 255 (316)
-.++|+||+|.|-. +.-+.+.-.+.+.+. .......+.=.|++|-+-...+.+++-.+++
T Consensus 179 rslFIFDE~DKmp~-gLld~lkpfLdyyp~--------v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~ 238 (344)
T KOG2170|consen 179 RSLFIFDEVDKLPP-GLLDVLKPFLDYYPQ--------VSGVDFRKAIFIFLSNAGGSEIARIALENAR 238 (344)
T ss_pred CceEEechhhhcCH-hHHHHHhhhhccccc--------cccccccceEEEEEcCCcchHHHHHHHHHHH
Confidence 35899999998743 444555555554332 2233445677889998888888776665544
No 484
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=86.84 E-value=9.4 Score=39.69 Aligned_cols=29 Identities=38% Similarity=0.500 Sum_probs=21.7
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHhhhcC
Q 043110 74 RDVLVNAATGTGKTVAYLAPIINHLQSYS 102 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~ 102 (316)
.++++.+.||||||.+.---++..+.+..
T Consensus 531 ~hllv~G~tgsGKSv~lnt~i~Sll~~~~ 559 (858)
T COG1674 531 GHLLIAGATGSGKSVALNTMILSLLYTHS 559 (858)
T ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHhCC
Confidence 57999999999999986555555555433
No 485
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=86.82 E-value=1 Score=43.87 Aligned_cols=31 Identities=23% Similarity=0.212 Sum_probs=23.7
Q ss_pred CceeEEEEecchhhhcCCcHHHHHHHHHHhc
Q 043110 185 TNLRWIIFDEADRILELGFGKEIEEILDILG 215 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~~~i~~i~~~l~ 215 (316)
++-+++|+||+-.-+|......+...+..+.
T Consensus 487 ~~~~iliLDE~TSaLD~~te~~I~~~l~~~~ 517 (529)
T TIGR02868 487 ADAPILLLDEPTEHLDAGTESELLEDLLAAL 517 (529)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHhc
Confidence 4667999999999898877777766666553
No 486
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=86.75 E-value=4.3 Score=41.65 Aligned_cols=44 Identities=20% Similarity=0.413 Sum_probs=27.0
Q ss_pred CcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhc
Q 043110 168 TPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 215 (316)
Q Consensus 168 Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~ 215 (316)
.||++...+..... .-.++++||+|.+.....++-...+++.+.
T Consensus 402 ~~G~~~~~l~~~~~----~~~villDEidk~~~~~~g~~~~aLlevld 445 (784)
T PRK10787 402 MPGKLIQKMAKVGV----KNPLFLLDEIDKMSSDMRGDPASALLEVLD 445 (784)
T ss_pred CCcHHHHHHHhcCC----CCCEEEEEChhhcccccCCCHHHHHHHHhc
Confidence 57788777765321 113689999999876433333455555554
No 487
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=86.74 E-value=0.83 Score=44.02 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHhCCC--cEEEEcCCCCchHHHHHHHHHHHh
Q 043110 60 TKVQAQAIPVILSGR--DVLVNAATGTGKTVAYLAPIINHL 98 (316)
Q Consensus 60 ~~~Q~~~i~~il~g~--d~li~a~TGsGKT~~~~lp~l~~l 98 (316)
.+-|.+.+..+.... -+++.+|||||||... ..++..+
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 456666666655433 3789999999999864 3345544
No 488
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=86.73 E-value=3.4 Score=43.07 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=56.1
Q ss_pred CeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHH---HHh-cCCcEEEeCcHHHHHHHhcCCccccC
Q 043110 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA---RLR-KGISILVATPGHLLDHLKHTSSFLHT 185 (316)
Q Consensus 110 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~-~~~~IlV~Tp~~l~~~l~~~~~~~~~ 185 (316)
+.+++|++|+++-+..+++.++++. ....+..++|+........ .+. ...+|+|||. + +. .++++.
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~---p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~--i---ie--~GIDIp 729 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELV---PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT--I---IE--TGIDIP 729 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhC---CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC--h---hh--cccccc
Confidence 4569999999998888888877653 3356677777766543332 233 3479999994 2 22 566778
Q ss_pred ceeEEEEecchhh
Q 043110 186 NLRWIIFDEADRI 198 (316)
Q Consensus 186 ~l~~lViDEad~l 198 (316)
+++++|++.+|+.
T Consensus 730 ~v~~VIi~~a~~~ 742 (926)
T TIGR00580 730 NANTIIIERADKF 742 (926)
T ss_pred cCCEEEEecCCCC
Confidence 8999999999873
No 489
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=86.71 E-value=0.78 Score=38.71 Aligned_cols=19 Identities=37% Similarity=0.585 Sum_probs=14.2
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.++++++.+|.|+|||+..
T Consensus 21 G~h~lLl~GppGtGKTmlA 39 (206)
T PF01078_consen 21 GGHHLLLIGPPGTGKTMLA 39 (206)
T ss_dssp CC--EEEES-CCCTHHHHH
T ss_pred CCCCeEEECCCCCCHHHHH
Confidence 5678999999999999874
No 490
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=86.55 E-value=4.2 Score=36.17 Aligned_cols=41 Identities=32% Similarity=0.309 Sum_probs=27.3
Q ss_pred HHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChH
Q 043110 68 PVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSE 121 (316)
Q Consensus 68 ~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~ 121 (316)
|+-..|+-+++.+..|.|||.+. .+.... .+.++++-|..+
T Consensus 89 ~A~k~g~l~~vyg~~g~gKt~a~----~~y~~s---------~p~~~l~~~~p~ 129 (297)
T COG2842 89 PASKTGSLVVVYGYAGLGKTQAA----KNYAPS---------NPNALLIEADPS 129 (297)
T ss_pred hhhhcCceEEEeccccchhHHHH----Hhhccc---------CccceeecCChh
Confidence 34446777899999999999873 232222 444777777655
No 491
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=86.51 E-value=1.7 Score=36.48 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=17.3
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHhh
Q 043110 73 GRDVLVNAATGTGKTVAYLAPIINHLQ 99 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~lp~l~~l~ 99 (316)
..++++.+.||||||.+...-+...+.
T Consensus 38 ~~h~li~G~tgsGKS~~l~~ll~~l~~ 64 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLLRTLLLSLAL 64 (205)
T ss_dssp S-SEEEE--TTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHHH
Confidence 348999999999999876544444443
No 492
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=86.28 E-value=19 Score=35.11 Aligned_cols=99 Identities=19% Similarity=0.201 Sum_probs=70.5
Q ss_pred cCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChH---HHHH
Q 043110 80 AATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRS---KEKA 156 (316)
Q Consensus 80 a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 156 (316)
.-.++||+..-++++.+.+... -.+-+||.+-+.+-|.|++..+. .+..+.+.+++|..... ....
T Consensus 364 elvF~gse~~K~lA~rq~v~~g-------~~PP~lIfVQs~eRak~L~~~L~----~~~~i~v~vIh~e~~~~qrde~~~ 432 (593)
T KOG0344|consen 364 ELVFCGSEKGKLLALRQLVASG-------FKPPVLIFVQSKERAKQLFEELE----IYDNINVDVIHGERSQKQRDETME 432 (593)
T ss_pred hheeeecchhHHHHHHHHHhcc-------CCCCeEEEEecHHHHHHHHHHhh----hccCcceeeEecccchhHHHHHHH
Confidence 3457888888888888777653 34559999999999999998886 24567777888775543 3344
Q ss_pred HHhcC-CcEEEeCcHHHHHHHhcCCccccCceeEEEEecch
Q 043110 157 RLRKG-ISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEAD 196 (316)
Q Consensus 157 ~l~~~-~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad 196 (316)
.++.+ ..++||| +.+. .++++..+.++|-++.-
T Consensus 433 ~FR~g~IwvLicT-----dll~--RGiDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 433 RFRIGKIWVLICT-----DLLA--RGIDFKGVNLVINYDFP 466 (593)
T ss_pred HHhccCeeEEEeh-----hhhh--ccccccCcceEEecCCC
Confidence 45544 6899999 3444 34777899999987653
No 493
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=86.27 E-value=2.8 Score=33.10 Aligned_cols=29 Identities=28% Similarity=0.349 Sum_probs=21.9
Q ss_pred ceeEEEEecchhhhcCCcHHHHHHHHHHh
Q 043110 186 NLRWIIFDEADRILELGFGKEIEEILDIL 214 (316)
Q Consensus 186 ~l~~lViDEad~l~~~~~~~~i~~i~~~l 214 (316)
+-+++++||.-.-+|......+..+++.+
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc
Confidence 56789999999888876666666666554
No 494
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=86.25 E-value=3.4 Score=32.01 Aligned_cols=59 Identities=20% Similarity=0.113 Sum_probs=31.5
Q ss_pred EEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHh
Q 043110 76 VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLH 135 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 135 (316)
+...|+||+|||.+.-+ +.+.+.....+..--....+..-.|....+.+-.+.++.+..
T Consensus 56 lSfHG~tGtGKn~v~~l-iA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~I~ 114 (127)
T PF06309_consen 56 LSFHGWTGTGKNFVSRL-IAEHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSWIR 114 (127)
T ss_pred EEeecCCCCcHHHHHHH-HHHHHHhcccCCCceeeecccccCCCchHHHHHHHHHHHHHH
Confidence 45899999999988655 334433322111110111122334666666666666665543
No 495
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=86.24 E-value=0.6 Score=46.27 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=20.3
Q ss_pred CcEEEEcCCCCchHHHHHHHHHH
Q 043110 74 RDVLVNAATGTGKTVAYLAPIIN 96 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~lp~l~ 96 (316)
.++++.||||||||.++++|-+-
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL 234 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTAL 234 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhh
Confidence 47999999999999999999643
No 496
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=86.06 E-value=4.2 Score=37.27 Aligned_cols=15 Identities=13% Similarity=0.228 Sum_probs=12.7
Q ss_pred EEEEcCCCCchHHHH
Q 043110 76 VLVNAATGTGKTVAY 90 (316)
Q Consensus 76 ~li~a~TGsGKT~~~ 90 (316)
++++|..|+|||...
T Consensus 2 ~~l~Gl~GaGKST~~ 16 (340)
T TIGR03575 2 CVLCGLPAAGKSTLA 16 (340)
T ss_pred eEEECCCCCCHHHHH
Confidence 578999999999763
No 497
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=85.79 E-value=14 Score=33.06 Aligned_cols=28 Identities=21% Similarity=0.177 Sum_probs=18.8
Q ss_pred CceeEEEEecchhhhcCCcHHHHHHHHHH
Q 043110 185 TNLRWIIFDEADRILELGFGKEIEEILDI 213 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~~~i~~i~~~ 213 (316)
...+++|||+||.|... -...+.++++.
T Consensus 94 ~~~kv~ii~~ad~mt~~-AaNaLLK~LEE 121 (290)
T PRK05917 94 SPYKIYIIHEADRMTLD-AISAFLKVLED 121 (290)
T ss_pred CCceEEEEechhhcCHH-HHHHHHHHhhc
Confidence 46789999999998653 33444444444
No 498
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=85.76 E-value=3.7 Score=42.51 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=14.2
Q ss_pred EEEEcCCCCchHHHHH
Q 043110 76 VLVNAATGTGKTVAYL 91 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~ 91 (316)
+++.||||+|||...-
T Consensus 599 ~lf~Gp~GvGKT~lA~ 614 (852)
T TIGR03345 599 FLLVGPSGVGKTETAL 614 (852)
T ss_pred EEEECCCCCCHHHHHH
Confidence 7999999999998753
No 499
>PRK13531 regulatory ATPase RavA; Provisional
Probab=85.74 E-value=1.7 Score=41.60 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=22.2
Q ss_pred HHHHHHHhCCCcEEEEcCCCCchHHHH
Q 043110 64 AQAIPVILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 64 ~~~i~~il~g~d~li~a~TGsGKT~~~ 90 (316)
..++-.++.|.++++.+|+|+|||..+
T Consensus 30 ~lll~aalag~hVLL~GpPGTGKT~LA 56 (498)
T PRK13531 30 RLCLLAALSGESVFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHHHccCCCEEEECCCChhHHHHH
Confidence 444556678999999999999999875
No 500
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=85.65 E-value=17 Score=35.76 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=15.2
Q ss_pred cEEEEcCCCCchHHHHHH
Q 043110 75 DVLVNAATGTGKTVAYLA 92 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~l 92 (316)
-.++.||.|+|||.++..
T Consensus 40 ayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARA 57 (563)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 379999999999988644
Done!