Query 043110
Match_columns 316
No_of_seqs 263 out of 2181
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 22:51:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043110.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043110hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fe2_A Probable ATP-dependent 100.0 1.5E-41 5E-46 295.3 25.6 214 33-265 27-240 (242)
2 3fmo_B ATP-dependent RNA helic 100.0 8.8E-42 3E-46 305.8 21.9 210 30-264 87-299 (300)
3 3iuy_A Probable ATP-dependent 100.0 1.1E-40 3.8E-45 287.0 23.3 211 33-262 17-228 (228)
4 3ber_A Probable ATP-dependent 100.0 3.4E-40 1.2E-44 287.9 25.8 208 33-263 41-248 (249)
5 1vec_A ATP-dependent RNA helic 100.0 9.2E-40 3.1E-44 276.7 25.7 203 35-260 3-205 (206)
6 2oxc_A Probable ATP-dependent 100.0 2E-39 7E-44 279.7 24.3 207 33-263 22-229 (230)
7 2pl3_A Probable ATP-dependent 100.0 2.5E-39 8.6E-44 280.0 24.9 213 33-265 23-235 (236)
8 3bor_A Human initiation factor 100.0 1.2E-39 4.2E-44 282.3 22.5 208 33-264 28-236 (237)
9 1q0u_A Bstdead; DEAD protein, 100.0 5.8E-40 2E-44 280.9 20.0 209 34-265 3-214 (219)
10 3ly5_A ATP-dependent RNA helic 100.0 2.6E-39 8.7E-44 284.5 23.6 210 32-260 49-261 (262)
11 1wrb_A DJVLGB; RNA helicase, D 100.0 1.5E-39 5.1E-44 284.4 21.1 220 33-266 21-243 (253)
12 2gxq_A Heat resistant RNA depe 100.0 9.3E-39 3.2E-43 270.6 24.7 205 36-263 2-206 (207)
13 2db3_A ATP-dependent RNA helic 100.0 1.5E-38 5.1E-43 299.1 28.4 222 34-272 55-276 (434)
14 1qde_A EIF4A, translation init 100.0 1.5E-38 5.3E-43 272.7 23.7 207 35-266 14-220 (224)
15 1t6n_A Probable ATP-dependent 100.0 2.9E-38 1E-42 270.4 23.6 206 34-262 13-220 (220)
16 3dkp_A Probable ATP-dependent 100.0 2.1E-38 7.3E-43 275.7 17.3 210 35-265 25-243 (245)
17 2i4i_A ATP-dependent RNA helic 100.0 2.3E-35 8E-40 275.1 26.8 222 34-269 14-247 (417)
18 2j0s_A ATP-dependent RNA helic 100.0 1.5E-35 5.3E-40 276.0 23.3 217 30-270 32-248 (410)
19 3fht_A ATP-dependent RNA helic 100.0 4.5E-34 1.6E-38 265.6 22.9 220 26-270 16-238 (412)
20 3fmp_B ATP-dependent RNA helic 100.0 1.7E-34 5.8E-39 274.6 20.4 219 31-274 88-309 (479)
21 3eiq_A Eukaryotic initiation f 100.0 1.3E-33 4.5E-38 262.8 24.5 219 35-277 40-259 (414)
22 3sqw_A ATP-dependent RNA helic 100.0 9E-34 3.1E-38 275.7 22.6 219 35-264 17-245 (579)
23 3i5x_A ATP-dependent RNA helic 100.0 9.3E-34 3.2E-38 274.6 22.6 218 36-264 69-296 (563)
24 1xti_A Probable ATP-dependent 100.0 3.1E-33 1.1E-37 258.4 24.7 210 34-266 7-218 (391)
25 1fuu_A Yeast initiation factor 100.0 2.8E-33 9.5E-38 258.8 24.0 212 35-271 21-232 (394)
26 1s2m_A Putative ATP-dependent 100.0 4.4E-33 1.5E-37 258.4 22.8 209 33-265 19-227 (400)
27 3pey_A ATP-dependent RNA helic 100.0 5.5E-32 1.9E-36 249.9 23.1 209 35-271 5-216 (395)
28 1hv8_A Putative ATP-dependent 100.0 1.1E-31 3.8E-36 245.5 24.8 205 34-264 5-210 (367)
29 2z0m_A 337AA long hypothetical 100.0 1.4E-30 4.8E-35 235.5 24.8 190 42-262 1-190 (337)
30 3oiy_A Reverse gyrase helicase 100.0 1.1E-29 3.6E-34 237.1 16.5 185 44-247 8-209 (414)
31 3fho_A ATP-dependent RNA helic 100.0 3.5E-29 1.2E-33 239.6 15.0 210 36-273 120-332 (508)
32 2v1x_A ATP-dependent DNA helic 100.0 1.8E-28 6.3E-33 237.9 19.1 198 30-261 16-231 (591)
33 2zj8_A DNA helicase, putative 100.0 1E-27 3.6E-32 238.5 17.8 186 36-252 2-188 (720)
34 3l9o_A ATP-dependent RNA helic 100.0 8.6E-28 2.9E-32 247.1 16.5 194 35-266 162-357 (1108)
35 2va8_A SSO2462, SKI2-type heli 100.0 2.6E-27 9E-32 235.5 19.3 188 34-253 7-195 (715)
36 1oyw_A RECQ helicase, ATP-depe 99.9 1.4E-27 4.9E-32 229.0 15.5 196 35-261 2-205 (523)
37 4ddu_A Reverse gyrase; topoiso 99.9 5.4E-27 1.8E-31 241.1 18.3 185 44-247 65-266 (1104)
38 2p6r_A Afuhel308 helicase; pro 99.9 1.1E-27 3.7E-32 237.8 11.1 188 36-252 2-191 (702)
39 1gku_B Reverse gyrase, TOP-RG; 99.9 3.3E-27 1.1E-31 242.5 11.4 196 46-265 46-247 (1054)
40 4a2p_A RIG-I, retinoic acid in 99.9 8.9E-26 3.1E-30 217.6 19.0 173 55-243 4-177 (556)
41 1tf5_A Preprotein translocase 99.9 5.8E-26 2E-30 222.6 16.9 172 53-245 79-289 (844)
42 2ykg_A Probable ATP-dependent 99.9 2.1E-25 7.3E-30 221.1 20.0 180 48-243 4-184 (696)
43 3b6e_A Interferon-induced heli 99.9 5E-26 1.7E-30 193.1 13.2 180 54-241 29-216 (216)
44 2xgj_A ATP-dependent RNA helic 99.9 2.9E-25 1E-29 226.5 21.2 176 52-265 81-258 (1010)
45 3tbk_A RIG-I helicase domain; 99.9 1.5E-25 5.2E-30 215.7 17.8 172 58-244 4-176 (555)
46 4a2q_A RIG-I, retinoic acid in 99.9 7.9E-25 2.7E-29 220.0 21.1 175 53-243 243-418 (797)
47 4f92_B U5 small nuclear ribonu 99.9 2.5E-25 8.5E-30 236.4 17.5 192 41-253 910-1103(1724)
48 3llm_A ATP-dependent RNA helic 99.9 4E-25 1.4E-29 190.8 14.7 185 42-258 46-232 (235)
49 1nkt_A Preprotein translocase 99.9 9.7E-25 3.3E-29 214.0 16.1 176 49-245 103-317 (922)
50 2fsf_A Preprotein translocase 99.9 9.7E-25 3.3E-29 213.6 15.8 150 52-216 69-240 (853)
51 4a4z_A Antiviral helicase SKI2 99.9 1.8E-24 6.1E-29 220.7 17.6 163 52-251 34-196 (997)
52 4f92_B U5 small nuclear ribonu 99.9 3.7E-24 1.3E-28 227.5 18.8 194 42-252 66-263 (1724)
53 4a2w_A RIG-I, retinoic acid in 99.9 6.9E-24 2.4E-28 215.9 18.5 175 53-243 243-418 (936)
54 1gm5_A RECG; helicase, replica 99.9 6.1E-23 2.1E-27 203.8 18.0 170 44-250 355-534 (780)
55 2eyq_A TRCF, transcription-rep 99.9 3.8E-22 1.3E-26 206.3 22.2 188 39-263 585-782 (1151)
56 4gl2_A Interferon-induced heli 99.9 1.9E-23 6.5E-28 207.2 12.1 179 58-244 7-193 (699)
57 1rif_A DAR protein, DNA helica 99.9 2.8E-23 9.5E-28 184.0 11.9 160 58-252 113-272 (282)
58 1wp9_A ATP-dependent RNA helic 99.9 3.3E-22 1.1E-26 188.5 19.9 164 58-248 9-172 (494)
59 2oca_A DAR protein, ATP-depend 99.9 3.6E-22 1.2E-26 191.0 12.1 172 58-264 113-285 (510)
60 2ipc_A Preprotein translocase 99.9 3.1E-21 1.1E-25 188.9 16.0 139 47-200 69-216 (997)
61 2jlq_A Serine protease subunit 99.8 4.4E-22 1.5E-26 187.6 6.8 167 55-262 1-168 (451)
62 2whx_A Serine protease/ntpase/ 99.8 9E-23 3.1E-27 198.7 0.1 182 40-263 155-336 (618)
63 2fwr_A DNA repair protein RAD2 99.8 1.5E-20 5.1E-25 178.1 12.8 136 58-243 93-229 (472)
64 2fz4_A DNA repair protein RAD2 99.8 9.4E-20 3.2E-24 157.2 12.6 138 58-245 93-231 (237)
65 3o8b_A HCV NS3 protease/helica 99.8 1.7E-20 5.9E-25 182.0 5.8 144 59-245 218-363 (666)
66 2wv9_A Flavivirin protease NS2 99.8 6.5E-22 2.2E-26 194.0 -5.0 161 53-250 205-381 (673)
67 2xau_A PRE-mRNA-splicing facto 99.8 9.2E-19 3.2E-23 174.5 17.4 197 34-265 71-270 (773)
68 3h1t_A Type I site-specific re 99.8 9.6E-20 3.3E-24 177.3 7.5 157 58-245 178-344 (590)
69 1yks_A Genome polyprotein [con 99.8 5.7E-20 1.9E-24 172.6 2.4 139 69-251 4-149 (440)
70 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 2.5E-18 8.7E-23 175.0 14.3 154 58-244 271-440 (1038)
71 2z83_A Helicase/nucleoside tri 99.7 6.3E-19 2.2E-23 166.4 6.3 149 68-260 16-169 (459)
72 2v6i_A RNA helicase; membrane, 99.7 5.2E-18 1.8E-22 158.9 11.6 140 72-248 1-140 (431)
73 3crv_A XPD/RAD3 related DNA he 99.7 3.4E-17 1.2E-21 157.9 13.2 132 55-200 1-187 (551)
74 3rc3_A ATP-dependent RNA helic 99.7 1.1E-16 3.7E-21 156.8 7.6 141 69-253 151-291 (677)
75 1z63_A Helicase of the SNF2/RA 99.6 1.7E-15 5.9E-20 144.3 12.1 149 58-244 37-189 (500)
76 2vl7_A XPD; helicase, unknown 99.6 7.3E-16 2.5E-20 148.2 8.3 129 54-200 4-189 (540)
77 3dmq_A RNA polymerase-associat 99.5 9.9E-15 3.4E-19 149.0 8.8 159 58-243 153-317 (968)
78 1z3i_X Similar to RAD54-like; 99.5 2.1E-12 7E-17 126.7 18.8 160 58-243 55-231 (644)
79 4a15_A XPD helicase, ATP-depen 99.4 4.9E-13 1.7E-17 130.3 12.8 71 58-136 3-77 (620)
80 3mwy_W Chromo domain-containin 99.4 6.6E-13 2.2E-17 133.3 13.0 154 58-242 236-405 (800)
81 3jux_A Protein translocase sub 99.3 2.2E-11 7.5E-16 117.8 16.0 138 47-199 65-258 (822)
82 1w36_D RECD, exodeoxyribonucle 99.1 3.2E-10 1.1E-14 110.3 12.3 160 42-239 132-296 (608)
83 3upu_A ATP-dependent DNA helic 98.3 6.1E-06 2.1E-10 77.4 12.3 70 53-130 20-94 (459)
84 4b3f_X DNA-binding protein smu 98.3 3.7E-06 1.3E-10 82.4 10.5 67 58-133 189-256 (646)
85 3e1s_A Exodeoxyribonuclease V, 98.2 5E-06 1.7E-10 80.1 10.9 62 58-128 189-250 (574)
86 2gk6_A Regulator of nonsense t 98.2 2.7E-05 9.1E-10 75.9 14.9 69 57-133 179-247 (624)
87 2xzl_A ATP-dependent helicase 98.1 4.4E-05 1.5E-09 76.3 15.7 69 57-133 359-427 (802)
88 2wjy_A Regulator of nonsense t 98.0 6.4E-05 2.2E-09 75.1 14.3 68 58-133 356-423 (800)
89 2o0j_A Terminase, DNA packagin 97.6 0.0006 2.1E-08 62.1 11.9 74 58-138 163-236 (385)
90 3cpe_A Terminase, DNA packagin 97.4 0.0065 2.2E-07 58.7 16.9 74 58-138 163-236 (592)
91 3ec2_A DNA replication protein 97.1 0.0035 1.2E-07 50.4 10.2 19 72-90 37-55 (180)
92 3lfu_A DNA helicase II; SF1 he 97.1 0.0016 5.5E-08 63.4 9.2 71 57-134 8-78 (647)
93 1c4o_A DNA nucleotide excision 97.0 0.0011 3.8E-08 64.9 7.2 67 55-134 6-77 (664)
94 3vkw_A Replicase large subunit 96.9 0.003 1E-07 58.4 9.0 97 75-215 163-259 (446)
95 2kjq_A DNAA-related protein; s 96.7 0.0019 6.4E-08 50.7 5.0 19 72-90 35-53 (149)
96 1pjr_A PCRA; DNA repair, DNA r 96.7 0.0054 1.9E-07 60.7 9.4 71 57-134 10-80 (724)
97 2zpa_A Uncharacterized protein 96.7 0.0024 8.2E-08 62.0 6.6 114 58-244 175-290 (671)
98 1uaa_A REP helicase, protein ( 96.7 0.0039 1.3E-07 61.1 8.2 70 58-134 2-71 (673)
99 2b8t_A Thymidine kinase; deoxy 96.6 0.0026 8.8E-08 53.4 5.4 91 72-198 11-101 (223)
100 2orw_A Thymidine kinase; TMTK, 96.5 0.024 8.3E-07 45.9 10.5 40 72-120 2-41 (184)
101 1l8q_A Chromosomal replication 96.4 0.029 9.9E-07 49.5 11.5 18 73-90 37-54 (324)
102 3te6_A Regulatory protein SIR3 96.4 0.044 1.5E-06 48.5 12.3 28 72-100 44-71 (318)
103 3u4q_A ATP-dependent helicase/ 96.4 0.0076 2.6E-07 63.2 8.4 73 58-135 10-82 (1232)
104 1xx6_A Thymidine kinase; NESG, 96.3 0.022 7.4E-07 46.5 9.2 40 72-120 7-46 (191)
105 2j9r_A Thymidine kinase; TK1, 96.1 0.017 5.9E-07 47.9 7.6 40 73-121 28-67 (214)
106 3u61_B DNA polymerase accessor 96.1 0.035 1.2E-06 48.8 10.3 30 186-215 105-134 (324)
107 2d7d_A Uvrabc system protein B 96.0 0.0012 4.3E-08 64.5 0.5 42 146-200 304-345 (661)
108 3h4m_A Proteasome-activating n 96.0 0.018 6.1E-07 49.7 7.9 54 33-90 12-68 (285)
109 1w4r_A Thymidine kinase; type 96.0 0.025 8.6E-07 46.2 8.1 39 72-119 19-57 (195)
110 3bos_A Putative DNA replicatio 96.0 0.015 5E-07 48.5 7.1 19 72-90 51-69 (242)
111 2chg_A Replication factor C sm 95.9 0.18 6.3E-06 40.8 13.4 17 74-90 39-55 (226)
112 2z4s_A Chromosomal replication 95.7 0.09 3.1E-06 48.7 11.6 18 73-90 130-147 (440)
113 1d2n_A N-ethylmaleimide-sensit 95.7 0.33 1.1E-05 41.4 14.4 17 74-90 65-81 (272)
114 2d7d_A Uvrabc system protein B 95.6 0.019 6.4E-07 56.2 6.7 65 58-134 12-81 (661)
115 2p65_A Hypothetical protein PF 95.5 0.11 3.7E-06 41.1 9.9 18 73-90 43-60 (187)
116 2orv_A Thymidine kinase; TP4A 95.4 0.054 1.8E-06 45.5 8.1 41 72-121 18-58 (234)
117 3kl4_A SRP54, signal recogniti 95.4 0.2 6.9E-06 46.1 12.7 17 75-91 99-115 (433)
118 2v1u_A Cell division control p 95.4 0.13 4.3E-06 46.1 11.3 19 72-90 43-61 (387)
119 3syl_A Protein CBBX; photosynt 95.3 0.083 2.8E-06 46.0 9.3 18 73-90 67-84 (309)
120 1a5t_A Delta prime, HOLB; zinc 95.2 0.24 8.1E-06 43.9 12.3 40 59-99 3-49 (334)
121 1sxj_E Activator 1 40 kDa subu 95.2 0.14 4.8E-06 45.4 10.9 45 33-90 9-53 (354)
122 1g5t_A COB(I)alamin adenosyltr 95.2 0.14 4.7E-06 41.8 9.5 35 74-117 29-63 (196)
123 2w58_A DNAI, primosome compone 95.1 0.19 6.5E-06 40.7 10.5 24 74-98 55-78 (202)
124 2dr3_A UPF0273 protein PH0284; 95.0 0.26 9E-06 41.0 11.4 50 72-131 22-71 (247)
125 3eie_A Vacuolar protein sortin 94.9 0.19 6.7E-06 44.2 10.8 51 33-90 13-68 (322)
126 3e2i_A Thymidine kinase; Zn-bi 94.9 0.038 1.3E-06 45.9 5.4 41 72-121 27-67 (219)
127 1njg_A DNA polymerase III subu 94.8 0.46 1.6E-05 38.9 12.3 16 75-90 47-62 (250)
128 2qby_B CDC6 homolog 3, cell di 94.6 0.11 3.6E-06 46.7 8.3 18 73-90 45-62 (384)
129 3pfi_A Holliday junction ATP-d 94.5 1.1 3.6E-05 39.4 14.7 50 32-90 23-72 (338)
130 2qby_A CDC6 homolog 1, cell di 94.4 0.69 2.4E-05 41.0 13.3 18 73-90 45-62 (386)
131 2w0m_A SSO2452; RECA, SSPF, un 94.3 0.16 5.5E-06 41.8 8.3 20 72-91 22-41 (235)
132 1sxj_D Activator 1 41 kDa subu 94.3 0.43 1.5E-05 42.1 11.5 17 74-90 59-75 (353)
133 2qz4_A Paraplegin; AAA+, SPG7, 94.3 0.54 1.9E-05 39.5 11.7 53 35-90 3-56 (262)
134 3dm5_A SRP54, signal recogniti 94.1 1.4 4.9E-05 40.5 14.9 51 75-137 102-154 (443)
135 1iqp_A RFCS; clamp loader, ext 94.1 0.33 1.1E-05 42.2 10.4 16 75-90 48-63 (327)
136 2q6t_A DNAB replication FORK h 94.1 0.53 1.8E-05 43.4 12.2 116 72-201 199-325 (444)
137 1fnn_A CDC6P, cell division co 94.1 0.19 6.4E-06 45.0 8.9 16 75-90 46-61 (389)
138 1c4o_A DNA nucleotide excision 94.0 0.014 4.6E-07 57.2 1.2 27 167-201 314-340 (664)
139 4b4t_J 26S protease regulatory 94.0 0.2 6.9E-06 45.6 8.8 55 33-90 143-199 (405)
140 3vfd_A Spastin; ATPase, microt 94.0 0.28 9.4E-06 44.4 9.8 18 73-90 148-165 (389)
141 2r6a_A DNAB helicase, replicat 94.0 0.89 3E-05 42.0 13.4 130 72-215 202-347 (454)
142 1sxj_C Activator 1 40 kDa subu 93.6 0.75 2.6E-05 40.6 11.8 29 186-215 110-138 (340)
143 1n0w_A DNA repair protein RAD5 93.5 0.4 1.4E-05 39.7 9.4 21 72-92 23-43 (243)
144 2qp9_X Vacuolar protein sortin 93.4 0.26 8.8E-06 44.1 8.3 51 33-90 46-101 (355)
145 3pvs_A Replication-associated 93.4 0.13 4.3E-06 47.8 6.4 17 74-90 51-67 (447)
146 2ehv_A Hypothetical protein PH 93.3 0.25 8.5E-06 41.2 7.7 31 186-216 135-170 (251)
147 1sxj_B Activator 1 37 kDa subu 93.0 0.56 1.9E-05 40.6 9.8 16 75-90 44-59 (323)
148 2gno_A DNA polymerase III, gam 92.6 0.65 2.2E-05 40.6 9.5 16 75-90 20-35 (305)
149 3hu3_A Transitional endoplasmi 92.2 0.43 1.5E-05 44.7 8.4 55 33-90 199-255 (489)
150 3cmu_A Protein RECA, recombina 92.2 0.28 9.6E-06 53.4 7.8 47 67-122 1415-1467(2050)
151 1cr0_A DNA primase/helicase; R 92.0 0.56 1.9E-05 40.5 8.4 21 72-92 34-54 (296)
152 4a1f_A DNAB helicase, replicat 91.5 1.2 4.2E-05 39.5 10.1 115 72-200 45-170 (338)
153 1w5s_A Origin recognition comp 91.3 1.3 4.3E-05 39.9 10.3 17 74-90 51-69 (412)
154 2zr9_A Protein RECA, recombina 91.1 0.46 1.6E-05 42.4 7.0 39 72-119 60-98 (349)
155 3bh0_A DNAB-like replicative h 91.1 1.2 4.3E-05 38.9 9.7 52 72-133 67-118 (315)
156 3m6a_A ATP-dependent protease 91.1 0.47 1.6E-05 45.1 7.4 19 72-90 107-125 (543)
157 3co5_A Putative two-component 90.8 0.21 7.1E-06 38.3 3.8 21 70-90 24-44 (143)
158 2l8b_A Protein TRAI, DNA helic 90.7 0.32 1.1E-05 39.1 4.8 59 59-125 35-95 (189)
159 3n70_A Transport activator; si 90.6 0.24 8.3E-06 37.9 4.2 20 71-90 22-41 (145)
160 1jr3_A DNA polymerase III subu 90.1 2.9 9.8E-05 36.9 11.4 16 75-90 40-55 (373)
161 2z43_A DNA repair and recombin 90.0 0.94 3.2E-05 39.8 8.0 63 66-131 95-163 (324)
162 3lda_A DNA repair protein RAD5 89.2 4 0.00014 37.0 11.6 19 73-91 178-196 (400)
163 3hr8_A Protein RECA; alpha and 89.1 0.72 2.5E-05 41.3 6.5 41 73-122 61-101 (356)
164 1xp8_A RECA protein, recombina 88.9 0.81 2.8E-05 41.1 6.7 39 73-120 74-112 (366)
165 4b4t_M 26S protease regulatory 88.5 0.22 7.4E-06 45.9 2.7 55 33-90 176-232 (434)
166 3nwn_A Kinesin-like protein KI 88.3 0.34 1.1E-05 43.5 3.7 25 66-90 96-122 (359)
167 3io5_A Recombination and repai 88.1 0.71 2.4E-05 40.7 5.6 42 75-123 30-71 (333)
168 1e9r_A Conjugal transfer prote 88.0 0.69 2.4E-05 42.4 5.8 26 72-98 52-77 (437)
169 1v5w_A DMC1, meiotic recombina 87.9 2.6 8.9E-05 37.3 9.3 51 67-120 111-166 (343)
170 1bg2_A Kinesin; motor protein, 87.5 0.43 1.5E-05 42.2 3.9 25 66-90 69-95 (325)
171 2p6n_A ATP-dependent RNA helic 87.1 5.7 0.00019 31.7 10.3 71 112-194 56-130 (191)
172 2i1q_A DNA repair and recombin 87.0 2.3 8E-05 37.1 8.5 27 66-92 86-117 (322)
173 3dc4_A Kinesin-like protein NO 86.7 0.43 1.5E-05 42.5 3.4 24 67-90 87-112 (344)
174 2vvg_A Kinesin-2; motor protei 86.6 0.51 1.7E-05 42.1 3.9 24 67-90 82-107 (350)
175 2y65_A Kinesin, kinesin heavy 86.6 0.51 1.7E-05 42.4 3.9 24 67-90 77-102 (365)
176 3lre_A Kinesin-like protein KI 86.6 0.52 1.8E-05 42.2 3.9 24 67-90 98-123 (355)
177 1goj_A Kinesin, kinesin heavy 86.5 0.52 1.8E-05 42.2 3.9 24 67-90 73-98 (355)
178 4a14_A Kinesin, kinesin-like p 86.5 0.53 1.8E-05 42.0 3.9 25 66-90 75-101 (344)
179 2h58_A Kinesin-like protein KI 86.4 0.54 1.8E-05 41.6 3.9 26 65-90 71-98 (330)
180 3b6u_A Kinesin-like protein KI 86.3 0.51 1.7E-05 42.5 3.7 25 66-90 93-119 (372)
181 2zfi_A Kinesin-like protein KI 86.3 0.54 1.9E-05 42.2 3.9 25 66-90 81-107 (366)
182 1v8k_A Kinesin-like protein KI 86.2 0.54 1.9E-05 42.9 3.9 25 66-90 146-172 (410)
183 1qvr_A CLPB protein; coiled co 86.2 1.9 6.4E-05 43.3 8.2 17 74-90 192-208 (854)
184 4etp_A Kinesin-like protein KA 86.2 0.55 1.9E-05 42.8 4.0 25 66-90 132-158 (403)
185 2nr8_A Kinesin-like protein KI 86.1 0.53 1.8E-05 42.2 3.7 25 66-90 95-121 (358)
186 3gbj_A KIF13B protein; kinesin 86.1 0.54 1.9E-05 42.1 3.8 25 66-90 84-110 (354)
187 3hws_A ATP-dependent CLP prote 86.0 1.2 4E-05 39.7 6.0 19 72-90 50-68 (363)
188 3t0q_A AGR253WP; kinesin, alph 85.9 0.57 1.9E-05 41.8 3.8 25 66-90 77-103 (349)
189 1t5c_A CENP-E protein, centrom 85.9 0.55 1.9E-05 41.9 3.7 25 66-90 69-95 (349)
190 1x88_A Kinesin-like protein KI 85.9 0.53 1.8E-05 42.2 3.6 25 66-90 80-106 (359)
191 2qgz_A Helicase loader, putati 85.8 1.5 5.2E-05 38.2 6.5 26 73-99 152-177 (308)
192 2heh_A KIF2C protein; kinesin, 85.6 0.58 2E-05 42.3 3.8 25 66-90 126-152 (387)
193 3nbx_X ATPase RAVA; AAA+ ATPas 85.6 1.1 3.8E-05 42.0 5.8 36 55-90 23-58 (500)
194 3cmw_A Protein RECA, recombina 85.4 1.3 4.4E-05 47.7 6.7 99 66-200 1418-1523(1706)
195 3cob_A Kinesin heavy chain-lik 85.3 0.51 1.8E-05 42.4 3.2 25 66-90 71-97 (369)
196 1f9v_A Kinesin-like protein KA 85.3 0.58 2E-05 41.7 3.5 25 66-90 76-102 (347)
197 3u06_A Protein claret segregat 85.2 0.58 2E-05 42.7 3.6 25 66-90 130-156 (412)
198 2x8a_A Nuclear valosin-contain 85.1 0.17 6E-06 43.5 0.1 54 33-90 5-61 (274)
199 2hjv_A ATP-dependent RNA helic 85.1 3.6 0.00012 31.8 7.9 72 112-195 37-112 (163)
200 2wbe_C Bipolar kinesin KRP-130 85.1 0.57 2E-05 42.2 3.4 25 66-90 92-118 (373)
201 1u0j_A DNA replication protein 84.8 2.3 7.9E-05 36.3 7.0 44 44-91 73-122 (267)
202 2owm_A Nckin3-434, related to 84.7 0.7 2.4E-05 42.6 3.9 24 67-90 129-154 (443)
203 3hjh_A Transcription-repair-co 84.7 1.8 6.2E-05 40.4 6.8 51 72-134 13-63 (483)
204 3bfn_A Kinesin-like protein KI 84.7 0.56 1.9E-05 42.5 3.2 23 68-90 92-116 (388)
205 1w36_B RECB, exodeoxyribonucle 84.6 2.1 7.2E-05 44.6 7.9 61 75-135 18-81 (1180)
206 4ag6_A VIRB4 ATPase, type IV s 84.3 1.1 3.9E-05 40.3 5.2 31 187-217 263-296 (392)
207 2rep_A Kinesin-like protein KI 84.0 0.64 2.2E-05 41.9 3.2 25 66-90 107-133 (376)
208 3cf0_A Transitional endoplasmi 83.5 0.56 1.9E-05 40.7 2.6 56 33-90 10-66 (301)
209 2zts_A Putative uncharacterize 83.4 1.4 4.8E-05 36.4 5.0 52 72-132 29-80 (251)
210 2rb4_A ATP-dependent RNA helic 83.4 9 0.00031 29.8 9.6 72 110-193 34-109 (175)
211 2fna_A Conserved hypothetical 83.3 21 0.00072 30.7 16.2 17 74-90 31-47 (357)
212 1xwi_A SKD1 protein; VPS4B, AA 83.2 1.5 5.2E-05 38.4 5.4 50 34-90 8-62 (322)
213 1jbk_A CLPB protein; beta barr 83.1 1.3 4.3E-05 34.7 4.4 18 73-90 43-60 (195)
214 1ls1_A Signal recognition part 82.8 16 0.00053 31.4 11.6 18 73-90 98-115 (295)
215 1tue_A Replication protein E1; 82.3 2.3 7.9E-05 34.9 5.6 50 44-97 28-81 (212)
216 3b85_A Phosphate starvation-in 82.0 1.6 5.5E-05 35.7 4.7 32 59-90 8-39 (208)
217 4b4t_H 26S protease regulatory 82.0 0.64 2.2E-05 43.0 2.5 54 34-90 205-260 (467)
218 1ofh_A ATP-dependent HSL prote 81.9 2.4 8.2E-05 36.3 6.1 18 73-90 50-67 (310)
219 2bjv_A PSP operon transcriptio 81.8 1.3 4.5E-05 37.3 4.3 19 72-90 28-46 (265)
220 1kgd_A CASK, peripheral plasma 81.6 0.79 2.7E-05 36.4 2.6 19 72-90 4-22 (180)
221 1fuk_A Eukaryotic initiation f 81.5 13 0.00043 28.6 9.7 72 111-194 31-106 (165)
222 4b4t_L 26S protease subunit RP 81.4 0.67 2.3E-05 42.7 2.4 55 33-90 176-232 (437)
223 2oap_1 GSPE-2, type II secreti 81.3 0.83 2.8E-05 43.0 3.0 21 69-89 256-276 (511)
224 2r44_A Uncharacterized protein 81.0 0.84 2.9E-05 40.0 2.8 26 65-90 38-63 (331)
225 1lv7_A FTSH; alpha/beta domain 80.7 2 6.7E-05 36.0 5.0 55 33-90 7-62 (257)
226 2gza_A Type IV secretion syste 80.4 0.94 3.2E-05 40.5 3.0 20 70-89 172-191 (361)
227 4b4t_K 26S protease regulatory 80.3 0.82 2.8E-05 42.0 2.6 54 34-90 168-223 (428)
228 3eaq_A Heat resistant RNA depe 80.2 12 0.0004 30.3 9.5 69 112-192 33-105 (212)
229 1lvg_A Guanylate kinase, GMP k 80.1 0.95 3.2E-05 36.6 2.6 19 72-90 3-21 (198)
230 4b4t_I 26S protease regulatory 79.9 1.1 3.7E-05 41.2 3.2 55 33-90 177-233 (437)
231 2eyu_A Twitching motility prot 79.5 0.8 2.7E-05 39.0 2.1 21 70-90 22-42 (261)
232 3vaa_A Shikimate kinase, SK; s 79.1 1.1 3.7E-05 36.1 2.7 19 72-90 24-42 (199)
233 3i5x_A ATP-dependent RNA helic 78.5 42 0.0014 31.3 14.0 77 110-195 339-419 (563)
234 2qor_A Guanylate kinase; phosp 78.3 1.1 3.7E-05 36.3 2.5 21 70-90 9-29 (204)
235 1ry6_A Internal kinesin; kines 77.8 1.6 5.6E-05 39.0 3.7 19 72-90 82-102 (360)
236 1q57_A DNA primase/helicase; d 77.8 5.4 0.00018 37.2 7.5 50 72-130 241-290 (503)
237 3tau_A Guanylate kinase, GMP k 77.7 1.3 4.3E-05 36.1 2.7 19 72-90 7-25 (208)
238 2pt7_A CAG-ALFA; ATPase, prote 77.3 1.2 4E-05 39.4 2.6 20 70-89 168-187 (330)
239 3tr0_A Guanylate kinase, GMP k 77.1 1.3 4.4E-05 35.5 2.6 20 71-90 5-24 (205)
240 1vma_A Cell division protein F 77.1 13 0.00045 32.2 9.3 17 75-91 106-122 (306)
241 3iij_A Coilin-interacting nucl 77.1 0.98 3.4E-05 35.6 1.8 21 71-91 9-29 (180)
242 1ojl_A Transcriptional regulat 77.0 1.9 6.6E-05 37.4 3.9 19 72-90 24-42 (304)
243 3b9p_A CG5977-PA, isoform A; A 76.9 1.2 4.1E-05 38.2 2.5 54 33-90 16-71 (297)
244 3a8t_A Adenylate isopentenyltr 76.7 1.4 4.8E-05 39.0 2.9 18 74-91 41-58 (339)
245 2j41_A Guanylate kinase; GMP, 76.5 1.4 4.6E-05 35.4 2.6 20 71-90 4-23 (207)
246 3exa_A TRNA delta(2)-isopenten 76.4 1.3 4.5E-05 38.8 2.6 18 74-91 4-21 (322)
247 3trf_A Shikimate kinase, SK; a 76.3 1.4 4.8E-05 34.7 2.6 19 73-91 5-23 (185)
248 2jgn_A DBX, DDX3, ATP-dependen 76.2 7.3 0.00025 30.8 6.9 71 110-192 46-120 (185)
249 2iut_A DNA translocase FTSK; n 76.0 4.3 0.00015 38.6 6.2 27 74-100 215-241 (574)
250 3uk6_A RUVB-like 2; hexameric 76.0 1.2 4.2E-05 39.4 2.4 18 73-90 70-87 (368)
251 3foz_A TRNA delta(2)-isopenten 75.9 1.4 4.8E-05 38.6 2.6 16 75-90 12-27 (316)
252 1qhx_A CPT, protein (chloramph 75.7 1.5 5.2E-05 34.2 2.6 18 73-90 3-20 (178)
253 2i4i_A ATP-dependent RNA helic 75.7 20 0.00067 31.8 10.4 71 110-192 276-350 (417)
254 1kag_A SKI, shikimate kinase I 75.6 1.7 5.9E-05 33.7 2.9 19 72-90 3-21 (173)
255 4h1g_A Maltose binding protein 75.6 1.8 6E-05 42.6 3.6 25 66-90 454-480 (715)
256 2ius_A DNA translocase FTSK; n 75.2 4.9 0.00017 37.7 6.3 26 73-98 167-192 (512)
257 3lw7_A Adenylate kinase relate 74.9 1.5 5.2E-05 33.8 2.4 16 75-90 3-18 (179)
258 1s96_A Guanylate kinase, GMP k 74.9 1.7 5.7E-05 35.9 2.7 21 70-90 13-33 (219)
259 1p9r_A General secretion pathw 74.5 4.1 0.00014 37.1 5.5 27 63-89 155-183 (418)
260 2qmh_A HPR kinase/phosphorylas 74.3 1.9 6.3E-05 35.3 2.8 19 72-90 33-51 (205)
261 1z6g_A Guanylate kinase; struc 74.2 1.9 6.3E-05 35.4 2.9 20 71-90 21-40 (218)
262 3ney_A 55 kDa erythrocyte memb 74.1 1.8 6.3E-05 35.1 2.8 19 72-90 18-36 (197)
263 3sqw_A ATP-dependent RNA helic 73.8 60 0.002 30.5 14.2 77 110-195 288-368 (579)
264 1zp6_A Hypothetical protein AT 73.8 1.4 4.9E-05 34.9 2.0 20 71-90 7-26 (191)
265 1hqc_A RUVB; extended AAA-ATPa 73.7 5.3 0.00018 34.4 5.9 18 73-90 38-55 (324)
266 1y63_A LMAJ004144AAA protein; 73.4 1.9 6.5E-05 34.2 2.6 19 72-90 9-27 (184)
267 2ze6_A Isopentenyl transferase 73.4 1.7 5.7E-05 36.7 2.4 17 75-91 3-19 (253)
268 3a00_A Guanylate kinase, GMP k 73.3 1.9 6.7E-05 34.2 2.7 17 74-90 2-18 (186)
269 3jvv_A Twitching mobility prot 73.0 1.6 5.6E-05 38.9 2.4 19 72-90 122-140 (356)
270 4gp7_A Metallophosphoesterase; 72.9 1.7 5.7E-05 34.1 2.2 20 72-91 8-27 (171)
271 2ewv_A Twitching motility prot 72.5 1.5 5.3E-05 39.3 2.1 20 71-90 134-153 (372)
272 1kht_A Adenylate kinase; phosp 72.2 2.1 7.1E-05 33.7 2.6 18 73-90 3-20 (192)
273 4akg_A Glutathione S-transfera 72.1 4.3 0.00015 45.8 5.8 46 44-91 892-941 (2695)
274 1ex7_A Guanylate kinase; subst 72.0 2.2 7.4E-05 34.3 2.6 17 74-90 2-18 (186)
275 1um8_A ATP-dependent CLP prote 71.9 2.1 7.3E-05 38.2 2.9 18 73-90 72-89 (376)
276 4eun_A Thermoresistant glucoki 71.7 2.2 7.6E-05 34.2 2.7 19 72-90 28-46 (200)
277 1u94_A RECA protein, recombina 71.6 4 0.00014 36.3 4.6 40 72-120 62-101 (356)
278 3t15_A Ribulose bisphosphate c 71.5 1.8 6.1E-05 37.3 2.2 17 74-90 37-53 (293)
279 2c9o_A RUVB-like 1; hexameric 71.4 2 6.7E-05 39.7 2.6 50 33-91 32-81 (456)
280 1znw_A Guanylate kinase, GMP k 71.4 2.2 7.6E-05 34.5 2.7 22 69-90 16-37 (207)
281 2r8r_A Sensor protein; KDPD, P 71.1 5.1 0.00017 33.3 4.8 21 72-92 4-25 (228)
282 4fcw_A Chaperone protein CLPB; 70.9 2.4 8.2E-05 36.4 2.9 18 74-91 48-65 (311)
283 1nlf_A Regulatory protein REPA 70.9 11 0.00038 31.8 7.2 23 70-92 27-49 (279)
284 3cm0_A Adenylate kinase; ATP-b 70.6 1.7 5.7E-05 34.3 1.7 19 72-90 3-21 (186)
285 1ly1_A Polynucleotide kinase; 70.5 2.2 7.6E-05 33.2 2.4 16 75-90 4-19 (181)
286 1t5i_A C_terminal domain of A 70.1 14 0.00049 28.6 7.2 72 111-194 32-107 (172)
287 1xti_A Probable ATP-dependent 70.1 31 0.0011 30.1 10.3 74 110-195 250-327 (391)
288 2px0_A Flagellar biosynthesis 70.0 5.5 0.00019 34.4 5.0 19 73-91 105-123 (296)
289 1knq_A Gluconate kinase; ALFA/ 70.0 2.1 7E-05 33.4 2.1 19 72-90 7-25 (175)
290 3kb2_A SPBC2 prophage-derived 69.8 2.3 7.7E-05 32.8 2.3 16 75-90 3-18 (173)
291 2v1x_A ATP-dependent DNA helic 69.7 22 0.00075 33.9 9.6 71 110-192 267-341 (591)
292 3e70_C DPA, signal recognition 69.4 57 0.0019 28.4 13.7 18 73-90 129-146 (328)
293 3d8b_A Fidgetin-like protein 1 68.8 2.4 8.3E-05 37.7 2.5 18 73-90 117-134 (357)
294 3pey_A ATP-dependent RNA helic 68.8 40 0.0014 29.3 10.7 76 110-197 243-322 (395)
295 3crm_A TRNA delta(2)-isopenten 68.7 3.1 0.0001 36.6 3.1 17 75-91 7-23 (323)
296 3fht_A ATP-dependent RNA helic 68.6 29 0.00098 30.6 9.8 72 110-193 266-341 (412)
297 1ixz_A ATP-dependent metallopr 68.2 2.5 8.7E-05 35.2 2.4 53 33-90 11-66 (254)
298 3bgw_A DNAB-like replicative h 68.1 5.4 0.00019 36.6 4.8 50 72-131 196-245 (444)
299 3d3q_A TRNA delta(2)-isopenten 68.0 2.6 9E-05 37.3 2.5 16 75-90 9-24 (340)
300 3nwj_A ATSK2; P loop, shikimat 67.9 3.3 0.00011 34.9 3.0 20 71-90 46-65 (250)
301 2r62_A Cell division protease 67.4 1.4 4.8E-05 37.1 0.6 18 73-90 44-61 (268)
302 1tf7_A KAIC; homohexamer, hexa 67.4 41 0.0014 31.3 10.9 31 185-216 370-405 (525)
303 1s2m_A Putative ATP-dependent 67.3 36 0.0012 29.8 10.2 72 110-193 258-333 (400)
304 2r2a_A Uncharacterized protein 67.1 4.2 0.00014 32.9 3.4 17 75-91 7-23 (199)
305 1sky_E F1-ATPase, F1-ATP synth 67.0 19 0.00067 33.2 8.2 27 66-92 141-170 (473)
306 3u4q_B ATP-dependent helicase/ 67.0 5.1 0.00018 41.6 4.9 39 77-121 5-43 (1166)
307 3vkg_A Dynein heavy chain, cyt 66.9 8.1 0.00028 44.3 6.6 46 44-91 875-924 (3245)
308 2cvh_A DNA repair and recombin 66.8 3.3 0.00011 33.3 2.8 21 72-92 19-39 (220)
309 3eph_A TRNA isopentenyltransfe 66.6 2.7 9.2E-05 38.2 2.3 19 196-214 210-228 (409)
310 2v54_A DTMP kinase, thymidylat 66.2 2.9 9.8E-05 33.4 2.3 19 72-90 3-21 (204)
311 2c95_A Adenylate kinase 1; tra 66.2 3.4 0.00012 32.7 2.7 20 71-90 7-26 (196)
312 2ffh_A Protein (FFH); SRP54, s 66.1 77 0.0026 28.7 14.1 17 75-91 100-116 (425)
313 3uie_A Adenylyl-sulfate kinase 66.0 2.8 9.6E-05 33.6 2.2 19 72-90 24-42 (200)
314 2eyq_A TRCF, transcription-rep 65.9 17 0.00059 37.7 8.5 78 110-197 812-893 (1151)
315 2chq_A Replication factor C sm 65.8 8.8 0.0003 32.7 5.5 45 32-90 11-55 (319)
316 1f2t_A RAD50 ABC-ATPase; DNA d 65.7 3.3 0.00011 31.7 2.4 15 75-89 25-39 (149)
317 1g8p_A Magnesium-chelatase 38 65.3 1.8 6.1E-05 38.0 0.9 18 73-90 45-62 (350)
318 3c8u_A Fructokinase; YP_612366 65.1 2.9 9.8E-05 33.8 2.1 19 72-90 21-39 (208)
319 1m7g_A Adenylylsulfate kinase; 65.0 4 0.00014 33.0 3.0 31 59-90 12-42 (211)
320 3t61_A Gluconokinase; PSI-biol 65.0 3.2 0.00011 33.2 2.4 17 74-90 19-35 (202)
321 3lnc_A Guanylate kinase, GMP k 64.7 2.4 8.1E-05 34.9 1.5 19 72-90 26-44 (231)
322 1oyw_A RECQ helicase, ATP-depe 64.6 35 0.0012 31.8 9.8 71 110-192 236-310 (523)
323 2db3_A ATP-dependent RNA helic 64.5 60 0.002 29.2 11.2 69 113-193 303-375 (434)
324 3f9v_A Minichromosome maintena 64.3 3.5 0.00012 39.5 2.8 16 75-90 329-344 (595)
325 2zan_A Vacuolar protein sortin 64.0 3.3 0.00011 38.0 2.5 54 33-90 129-184 (444)
326 2bdt_A BH3686; alpha-beta prot 63.9 3.5 0.00012 32.5 2.4 17 74-90 3-19 (189)
327 1ye8_A Protein THEP1, hypothet 63.9 3.7 0.00013 32.5 2.5 16 75-90 2-17 (178)
328 1gvn_B Zeta; postsegregational 63.5 3.3 0.00011 35.6 2.3 17 74-90 34-50 (287)
329 1tev_A UMP-CMP kinase; ploop, 63.5 3.3 0.00011 32.6 2.1 18 73-90 3-20 (196)
330 2j0s_A ATP-dependent RNA helic 63.4 44 0.0015 29.4 10.0 71 111-193 277-351 (410)
331 2rhm_A Putative kinase; P-loop 63.3 3.2 0.00011 32.7 2.0 18 73-90 5-22 (193)
332 3kta_A Chromosome segregation 63.3 3.5 0.00012 32.3 2.2 16 75-90 28-43 (182)
333 1iy2_A ATP-dependent metallopr 63.3 3.6 0.00012 34.9 2.4 53 33-90 35-90 (278)
334 1in4_A RUVB, holliday junction 63.3 3.7 0.00013 36.0 2.6 18 74-91 52-69 (334)
335 3pxg_A Negative regulator of g 62.9 5.3 0.00018 36.9 3.7 25 73-98 201-225 (468)
336 3asz_A Uridine kinase; cytidin 62.8 3.3 0.00011 33.4 2.0 19 72-90 5-23 (211)
337 3tif_A Uncharacterized ABC tra 62.5 4.2 0.00014 33.8 2.6 31 185-215 162-192 (235)
338 2cdn_A Adenylate kinase; phosp 62.5 3.2 0.00011 33.1 1.9 18 73-90 20-37 (201)
339 2plr_A DTMP kinase, probable t 62.4 3.5 0.00012 33.0 2.1 19 72-90 3-21 (213)
340 2v6i_A RNA helicase; membrane, 62.3 11 0.00037 34.4 5.6 53 111-169 172-225 (431)
341 3ice_A Transcription terminati 62.2 25 0.00085 31.9 7.7 34 58-91 156-192 (422)
342 3k1j_A LON protease, ATP-depen 62.0 6.3 0.00021 37.7 4.1 23 68-90 55-77 (604)
343 3cf2_A TER ATPase, transitiona 61.9 2.1 7.1E-05 42.6 0.7 54 34-90 473-528 (806)
344 1yks_A Genome polyprotein [con 61.7 11 0.00039 34.3 5.7 68 110-191 177-245 (440)
345 2pez_A Bifunctional 3'-phospho 61.7 3.9 0.00013 32.0 2.2 19 72-90 4-22 (179)
346 1zuh_A Shikimate kinase; alpha 61.6 4.4 0.00015 31.3 2.5 18 74-91 8-25 (168)
347 1via_A Shikimate kinase; struc 61.5 4.7 0.00016 31.4 2.7 17 74-90 5-21 (175)
348 2qt1_A Nicotinamide riboside k 61.3 2.1 7.3E-05 34.4 0.6 21 70-90 18-38 (207)
349 2bwj_A Adenylate kinase 5; pho 61.2 4.1 0.00014 32.2 2.3 19 72-90 11-29 (199)
350 3qf7_A RAD50; ABC-ATPase, ATPa 61.0 4 0.00014 36.4 2.4 16 75-90 25-40 (365)
351 4ag6_A VIRB4 ATPase, type IV s 60.9 7.4 0.00025 34.8 4.2 21 72-92 34-54 (392)
352 3fb4_A Adenylate kinase; psych 60.6 4.3 0.00015 32.8 2.4 16 75-90 2-17 (216)
353 2iyv_A Shikimate kinase, SK; t 60.6 5.1 0.00017 31.4 2.8 17 74-90 3-19 (184)
354 1aky_A Adenylate kinase; ATP:A 60.5 4.9 0.00017 32.6 2.7 18 73-90 4-21 (220)
355 1xjc_A MOBB protein homolog; s 60.5 12 0.00041 29.4 4.8 24 75-99 6-29 (169)
356 1g41_A Heat shock protein HSLU 60.5 4.9 0.00017 37.0 2.9 18 73-90 50-67 (444)
357 1zd8_A GTP:AMP phosphotransfer 60.4 4.5 0.00015 33.1 2.4 19 72-90 6-24 (227)
358 1ak2_A Adenylate kinase isoenz 60.3 4.8 0.00016 33.1 2.6 19 72-90 15-33 (233)
359 4a74_A DNA repair and recombin 60.1 4.9 0.00017 32.6 2.6 20 72-91 24-43 (231)
360 1cke_A CK, MSSA, protein (cyti 59.9 4.5 0.00016 32.8 2.4 17 74-90 6-22 (227)
361 1nks_A Adenylate kinase; therm 59.9 4.3 0.00015 31.8 2.2 16 75-90 3-18 (194)
362 2v9p_A Replication protein E1; 59.9 5.3 0.00018 34.7 2.9 19 72-90 125-143 (305)
363 1e6c_A Shikimate kinase; phosp 59.5 5.3 0.00018 30.7 2.7 17 74-90 3-19 (173)
364 2yvu_A Probable adenylyl-sulfa 59.2 4.5 0.00016 31.8 2.2 20 72-91 12-31 (186)
365 2i3b_A HCR-ntpase, human cance 59.2 7.4 0.00025 31.1 3.5 18 73-90 1-18 (189)
366 1sxj_A Activator 1 95 kDa subu 59.1 9.1 0.00031 35.8 4.6 53 32-90 33-94 (516)
367 2cbz_A Multidrug resistance-as 59.0 5.2 0.00018 33.3 2.6 18 72-89 30-47 (237)
368 3dl0_A Adenylate kinase; phosp 58.9 4.8 0.00016 32.5 2.4 16 75-90 2-17 (216)
369 2xau_A PRE-mRNA-splicing facto 58.8 30 0.001 34.1 8.5 76 110-192 303-393 (773)
370 1zak_A Adenylate kinase; ATP:A 58.8 5.3 0.00018 32.5 2.6 18 73-90 5-22 (222)
371 1qf9_A UMP/CMP kinase, protein 58.5 4.7 0.00016 31.6 2.2 16 75-90 8-23 (194)
372 1sgw_A Putative ABC transporte 58.4 6 0.00021 32.4 2.9 31 185-215 150-180 (214)
373 4akg_A Glutathione S-transfera 58.0 4.5 0.00015 45.6 2.6 21 70-90 1264-1284(2695)
374 3auy_A DNA double-strand break 57.9 4.6 0.00016 36.0 2.2 15 76-90 28-42 (371)
375 1zu4_A FTSY; GTPase, signal re 57.9 11 0.00038 32.9 4.7 16 75-90 107-122 (320)
376 2wwf_A Thymidilate kinase, put 57.7 5.3 0.00018 31.9 2.4 19 72-90 9-27 (212)
377 4e22_A Cytidylate kinase; P-lo 57.6 5.7 0.00019 33.2 2.7 19 72-90 26-44 (252)
378 2if2_A Dephospho-COA kinase; a 57.6 5 0.00017 32.0 2.2 16 75-90 3-18 (204)
379 1ukz_A Uridylate kinase; trans 57.3 5.3 0.00018 31.8 2.4 16 75-90 17-32 (203)
380 2jaq_A Deoxyguanosine kinase; 57.0 5.5 0.00019 31.5 2.4 16 75-90 2-17 (205)
381 2pze_A Cystic fibrosis transme 57.0 6.1 0.00021 32.6 2.7 18 72-89 33-50 (229)
382 1nn5_A Similar to deoxythymidy 57.0 5.7 0.00019 31.8 2.5 20 72-91 8-27 (215)
383 1jjv_A Dephospho-COA kinase; P 56.7 5.5 0.00019 31.8 2.4 16 75-90 4-19 (206)
384 2ce7_A Cell division protein F 56.6 5.2 0.00018 37.2 2.4 54 34-90 12-66 (476)
385 2pt5_A Shikimate kinase, SK; a 56.4 5.9 0.0002 30.3 2.4 16 75-90 2-17 (168)
386 2ff7_A Alpha-hemolysin translo 56.4 6.1 0.00021 33.1 2.6 31 185-215 162-192 (247)
387 3gfo_A Cobalt import ATP-bindi 56.1 6.2 0.00021 33.7 2.6 31 185-215 160-190 (275)
388 2bbw_A Adenylate kinase 4, AK4 56.1 6.1 0.00021 32.7 2.6 18 73-90 27-44 (246)
389 1wp9_A ATP-dependent RNA helic 55.9 57 0.0019 29.0 9.4 75 110-196 361-447 (494)
390 2ghi_A Transport protein; mult 55.8 6.3 0.00022 33.3 2.6 30 186-215 173-202 (260)
391 3a4m_A L-seryl-tRNA(SEC) kinas 55.7 5.4 0.00019 33.5 2.2 18 73-90 4-21 (260)
392 3pxi_A Negative regulator of g 55.7 7.9 0.00027 38.1 3.7 18 73-90 201-218 (758)
393 2pcj_A ABC transporter, lipopr 55.6 6.2 0.00021 32.4 2.5 32 185-216 157-188 (224)
394 3qks_A DNA double-strand break 55.5 6.1 0.00021 31.9 2.4 16 75-90 25-40 (203)
395 3tlx_A Adenylate kinase 2; str 55.3 7.1 0.00024 32.4 2.9 19 72-90 28-46 (243)
396 3kta_B Chromosome segregation 55.2 9 0.00031 30.2 3.3 39 187-240 87-125 (173)
397 1hv8_A Putative ATP-dependent 55.2 31 0.0011 29.6 7.3 73 110-194 238-314 (367)
398 2z0h_A DTMP kinase, thymidylat 55.1 6.1 0.00021 31.1 2.4 16 76-91 3-18 (197)
399 1rj9_A FTSY, signal recognitio 55.0 6.4 0.00022 34.2 2.6 18 73-90 102-119 (304)
400 2pbr_A DTMP kinase, thymidylat 54.8 6.2 0.00021 30.9 2.4 15 76-90 3-17 (195)
401 1ji0_A ABC transporter; ATP bi 54.7 6.8 0.00023 32.6 2.6 31 185-215 156-186 (240)
402 4g1u_C Hemin import ATP-bindin 54.7 6.9 0.00024 33.2 2.7 31 186-216 165-195 (266)
403 1g6h_A High-affinity branched- 54.5 6.8 0.00023 33.0 2.6 32 185-216 170-201 (257)
404 3b9q_A Chloroplast SRP recepto 54.1 5.9 0.0002 34.3 2.2 18 73-90 100-117 (302)
405 1mv5_A LMRA, multidrug resista 54.1 5.9 0.0002 33.0 2.2 30 186-215 157-186 (243)
406 1b0u_A Histidine permease; ABC 54.0 7.1 0.00024 33.0 2.7 32 185-216 170-201 (262)
407 2vli_A Antibiotic resistance p 53.8 4.8 0.00016 31.4 1.5 19 72-90 4-22 (183)
408 3be4_A Adenylate kinase; malar 53.6 6.8 0.00023 31.7 2.4 18 73-90 5-22 (217)
409 2d2e_A SUFC protein; ABC-ATPas 53.5 7.3 0.00025 32.6 2.6 31 186-216 161-191 (250)
410 2zu0_C Probable ATP-dependent 53.2 7.5 0.00025 33.0 2.7 30 186-215 182-211 (267)
411 1htw_A HI0065; nucleotide-bind 53.2 6.7 0.00023 30.4 2.2 19 72-90 32-50 (158)
412 1rz3_A Hypothetical protein rb 53.1 6.6 0.00022 31.4 2.2 17 74-90 23-39 (201)
413 2qi9_C Vitamin B12 import ATP- 53.0 7.6 0.00026 32.6 2.7 28 189-216 154-181 (249)
414 3i32_A Heat resistant RNA depe 53.0 29 0.00098 29.9 6.5 68 112-191 30-101 (300)
415 1vpl_A ABC transporter, ATP-bi 52.9 7.7 0.00026 32.7 2.7 32 185-216 163-194 (256)
416 1uf9_A TT1252 protein; P-loop, 52.7 6.7 0.00023 31.0 2.2 16 75-90 10-25 (203)
417 2ixe_A Antigen peptide transpo 52.5 7.6 0.00026 33.0 2.6 31 185-215 173-203 (271)
418 3cmw_A Protein RECA, recombina 52.4 20 0.00067 38.8 6.2 40 72-120 33-72 (1706)
419 2nq2_C Hypothetical ABC transp 52.4 7.7 0.00026 32.6 2.6 32 185-216 145-176 (253)
420 2yz2_A Putative ABC transporte 52.3 7.8 0.00027 32.8 2.6 31 185-215 155-185 (266)
421 1vht_A Dephospho-COA kinase; s 52.2 7.3 0.00025 31.4 2.4 17 74-90 5-21 (218)
422 1e4v_A Adenylate kinase; trans 51.7 6.9 0.00024 31.6 2.2 16 75-90 2-17 (214)
423 2olj_A Amino acid ABC transpor 51.7 8.2 0.00028 32.7 2.7 32 185-216 176-207 (263)
424 2p5t_B PEZT; postsegregational 51.6 4.7 0.00016 33.7 1.2 17 74-90 33-49 (253)
425 2xb4_A Adenylate kinase; ATP-b 51.5 7.6 0.00026 31.7 2.4 16 75-90 2-17 (223)
426 2ihy_A ABC transporter, ATP-bi 51.3 8.3 0.00028 32.9 2.7 31 185-215 178-208 (279)
427 1ypw_A Transitional endoplasmi 50.9 6.7 0.00023 39.0 2.3 19 72-90 237-255 (806)
428 1odf_A YGR205W, hypothetical 3 50.8 7.7 0.00026 33.4 2.4 16 75-90 33-48 (290)
429 3pxi_A Negative regulator of g 50.7 12 0.00041 36.8 4.1 17 75-91 523-539 (758)
430 3mm4_A Histidine kinase homolo 50.7 78 0.0027 24.9 8.5 62 71-132 18-83 (206)
431 2oca_A DAR protein, ATP-depend 50.6 67 0.0023 29.4 9.1 74 112-196 349-426 (510)
432 3nh6_A ATP-binding cassette SU 50.5 7.1 0.00024 34.0 2.1 31 186-216 208-238 (306)
433 2jeo_A Uridine-cytidine kinase 50.2 7 0.00024 32.4 2.0 19 72-90 24-42 (245)
434 2f1r_A Molybdopterin-guanine d 50.2 5.6 0.00019 31.3 1.3 16 75-90 4-19 (171)
435 2vhj_A Ntpase P4, P4; non- hyd 49.9 7.7 0.00026 34.1 2.3 21 72-92 122-142 (331)
436 3vkg_A Dynein heavy chain, cyt 49.8 7.5 0.00026 44.5 2.6 20 70-89 1301-1320(3245)
437 3qkt_A DNA double-strand break 49.7 8 0.00027 33.9 2.4 15 76-90 26-40 (339)
438 3tqc_A Pantothenate kinase; bi 49.6 14 0.00049 32.2 4.0 16 75-90 94-109 (321)
439 2v3c_C SRP54, signal recogniti 49.4 14 0.00047 33.8 4.0 17 75-91 101-117 (432)
440 2z0m_A 337AA long hypothetical 49.0 44 0.0015 28.3 7.1 70 110-195 220-293 (337)
441 2grj_A Dephospho-COA kinase; T 48.4 9.1 0.00031 30.6 2.4 16 75-90 14-29 (192)
442 1r6b_X CLPA protein; AAA+, N-t 48.1 8.9 0.00031 37.7 2.7 18 73-90 207-224 (758)
443 3cmu_A Protein RECA, recombina 48.1 18 0.00061 39.8 5.1 46 72-127 1080-1125(2050)
444 3aez_A Pantothenate kinase; tr 48.0 8.4 0.00029 33.5 2.2 18 73-90 90-107 (312)
445 2bbs_A Cystic fibrosis transme 47.9 9.3 0.00032 32.9 2.5 19 72-90 63-81 (290)
446 1ltq_A Polynucleotide kinase; 47.8 9.1 0.00031 32.6 2.4 16 75-90 4-19 (301)
447 2dhr_A FTSH; AAA+ protein, hex 47.6 8.5 0.00029 36.0 2.3 53 33-90 26-81 (499)
448 1r6b_X CLPA protein; AAA+, N-t 47.5 14 0.00046 36.4 3.9 16 75-90 490-505 (758)
449 2vp4_A Deoxynucleoside kinase; 47.2 8.8 0.0003 31.4 2.2 18 72-89 19-36 (230)
450 2pjz_A Hypothetical protein ST 47.2 10 0.00034 32.1 2.5 30 185-214 145-174 (263)
451 2og2_A Putative signal recogni 47.0 8.7 0.0003 34.2 2.2 17 74-90 158-174 (359)
452 1np6_A Molybdopterin-guanine d 46.8 10 0.00036 29.8 2.4 15 75-89 8-22 (174)
453 2qen_A Walker-type ATPase; unk 46.6 14 0.00047 31.9 3.5 18 72-89 30-47 (350)
454 1qvr_A CLPB protein; coiled co 46.4 9.8 0.00033 38.1 2.7 16 75-90 590-605 (854)
455 1uj2_A Uridine-cytidine kinase 45.8 10 0.00035 31.5 2.4 16 75-90 24-39 (252)
456 1j8m_F SRP54, signal recogniti 45.8 17 0.00058 31.3 3.8 17 75-91 100-116 (297)
457 2onk_A Molybdate/tungstate ABC 45.6 11 0.00036 31.4 2.4 31 185-215 143-173 (240)
458 1svm_A Large T antigen; AAA+ f 45.5 11 0.00038 33.8 2.7 19 72-90 168-186 (377)
459 1nij_A Hypothetical protein YJ 45.5 16 0.00054 31.7 3.6 14 76-89 7-20 (318)
460 1tf7_A KAIC; homohexamer, hexa 45.3 26 0.00089 32.7 5.3 21 72-92 38-58 (525)
461 3ake_A Cytidylate kinase; CMP 45.1 11 0.00037 29.9 2.4 16 75-90 4-19 (208)
462 1q3t_A Cytidylate kinase; nucl 44.7 12 0.00042 30.6 2.7 19 72-90 15-33 (236)
463 3sr0_A Adenylate kinase; phosp 44.6 11 0.00038 30.5 2.4 16 75-90 2-17 (206)
464 3r20_A Cytidylate kinase; stru 44.6 11 0.00039 31.2 2.4 18 73-90 9-26 (233)
465 3h1t_A Type I site-specific re 44.6 77 0.0026 29.7 8.6 79 110-195 439-526 (590)
466 3tqf_A HPR(Ser) kinase; transf 44.6 13 0.00044 29.5 2.6 19 72-90 15-33 (181)
467 1gtv_A TMK, thymidylate kinase 44.4 5.1 0.00017 32.1 0.2 15 76-90 3-17 (214)
468 2f6r_A COA synthase, bifunctio 44.2 11 0.00036 32.2 2.2 16 75-90 77-92 (281)
469 1pui_A ENGB, probable GTP-bind 44.1 10 0.00034 30.1 2.0 18 72-89 25-42 (210)
470 3cf2_A TER ATPase, transitiona 44.0 11 0.00036 37.5 2.5 17 74-90 239-255 (806)
471 2v26_A Myosin VI; calmodulin-b 43.9 40 0.0014 33.4 6.5 57 35-91 94-158 (784)
472 2i3b_A HCR-ntpase, human cance 43.5 12 0.0004 29.9 2.3 29 184-212 103-133 (189)
473 3umf_A Adenylate kinase; rossm 43.1 13 0.00044 30.5 2.5 19 72-90 28-46 (217)
474 3sop_A Neuronal-specific septi 43.0 11 0.00036 32.1 2.0 16 75-90 4-19 (270)
475 2yhs_A FTSY, cell division pro 42.6 26 0.00088 32.7 4.7 17 74-90 294-310 (503)
476 4eaq_A DTMP kinase, thymidylat 42.4 12 0.00041 30.8 2.2 19 72-90 25-43 (229)
477 1vt4_I APAF-1 related killer D 42.4 2.3E+02 0.0079 29.4 11.7 33 141-173 245-277 (1221)
478 1sq5_A Pantothenate kinase; P- 42.3 11 0.00037 32.6 2.0 17 74-90 81-97 (308)
479 2h92_A Cytidylate kinase; ross 42.0 15 0.00052 29.4 2.8 18 73-90 3-20 (219)
480 1byi_A Dethiobiotin synthase; 41.5 35 0.0012 27.2 5.0 16 77-92 6-21 (224)
481 2woo_A ATPase GET3; tail-ancho 41.5 27 0.00094 30.3 4.6 19 76-94 22-40 (329)
482 3zq6_A Putative arsenical pump 41.5 29 0.00098 30.1 4.7 20 76-95 17-36 (324)
483 2o0a_A S.cerevisiae chromosome 41.4 30 0.001 29.6 4.5 21 72-92 90-112 (298)
484 3fvq_A Fe(3+) IONS import ATP- 41.4 13 0.00045 33.0 2.5 18 72-89 29-46 (359)
485 1z47_A CYSA, putative ABC-tran 41.3 14 0.00048 32.8 2.6 19 72-90 40-58 (355)
486 3l0o_A Transcription terminati 41.3 51 0.0017 29.8 6.2 33 58-90 157-192 (427)
487 2wv9_A Flavivirin protease NS2 41.2 21 0.00072 34.7 4.0 68 110-191 410-478 (673)
488 1jbk_A CLPB protein; beta barr 41.1 35 0.0012 25.9 4.8 13 187-199 116-128 (195)
489 2yyz_A Sugar ABC transporter, 40.8 15 0.0005 32.7 2.6 30 186-215 151-180 (359)
490 2it1_A 362AA long hypothetical 40.7 15 0.00051 32.7 2.7 19 72-90 28-46 (362)
491 1c9k_A COBU, adenosylcobinamid 40.5 15 0.00051 29.2 2.4 15 76-90 2-16 (180)
492 1pzn_A RAD51, DNA repair and r 40.4 17 0.00057 32.1 3.0 19 74-92 132-150 (349)
493 3gd7_A Fusion complex of cysti 40.0 14 0.00048 33.2 2.5 29 186-214 173-201 (390)
494 3rlf_A Maltose/maltodextrin im 39.9 16 0.00053 32.9 2.7 30 186-215 151-180 (381)
495 1ihu_A Arsenical pump-driving 39.9 30 0.001 32.8 4.8 23 74-96 9-31 (589)
496 1e69_A Chromosome segregation 39.7 11 0.00037 32.8 1.6 15 76-90 27-41 (322)
497 4a82_A Cystic fibrosis transme 39.6 15 0.0005 34.9 2.6 30 186-215 495-524 (578)
498 2yv5_A YJEQ protein; hydrolase 39.5 23 0.00078 30.4 3.7 25 65-89 157-181 (302)
499 2h57_A ADP-ribosylation factor 39.4 15 0.00051 28.5 2.3 16 74-89 22-37 (190)
500 1g29_1 MALK, maltose transport 39.2 16 0.00054 32.7 2.6 19 72-90 28-46 (372)
No 1
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.5e-41 Score=295.33 Aligned_cols=214 Identities=33% Similarity=0.538 Sum_probs=191.3
Q ss_pred ccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCee
Q 043110 33 ASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 112 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 112 (316)
...+|+++++++.+.+.+ .++||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+..... .....+++
T Consensus 27 ~~~~f~~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~-~~~~~~~~ 104 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVI-ARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPF-LERGDGPI 104 (242)
T ss_dssp CCSSTTTTTCCHHHHHHH-HTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCC-CCTTCCCS
T ss_pred ccCCHhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccc-cccCCCCE
Confidence 446799999999999999 6789999999999999999999999999999999999999999999875332 22345778
Q ss_pred EEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEE
Q 043110 113 ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIF 192 (316)
Q Consensus 113 ~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lVi 192 (316)
+||++||++|+.|+++.++.++...+ ......+||.....+...+..+++|+|+||+++.+++.. ....+.+++++|+
T Consensus 105 ~lil~Pt~~L~~Q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~lVi 182 (242)
T 3fe2_A 105 CLVLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC-GKTNLRRTTYLVL 182 (242)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHH-TSCCCTTCCEEEE
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhcC-ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-CCCCcccccEEEE
Confidence 99999999999999999999987754 566778889888888888888999999999999999976 4456789999999
Q ss_pred ecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCC
Q 043110 193 DEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265 (316)
Q Consensus 193 DEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 265 (316)
||||++++++|...+..+++.++. .+|+++||||+|+.+.++++.++++|+.|.++..
T Consensus 183 DEah~l~~~~~~~~~~~i~~~~~~---------------~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 183 DEADRMLDMGFEPQIRKIVDQIRP---------------DRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp TTHHHHHHTTCHHHHHHHHTTSCS---------------SCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred eCHHHHhhhCcHHHHHHHHHhCCc---------------cceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999999999999999999988876 8899999999999999999999999999998765
No 2
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=8.8e-42 Score=305.81 Aligned_cols=210 Identities=24% Similarity=0.430 Sum_probs=183.4
Q ss_pred cccccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCC
Q 043110 30 EIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSG--RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDR 107 (316)
Q Consensus 30 ~~~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~ 107 (316)
+.....+|++++|++.+++.| ..+||..|+++|.++||.++.| +|++++||||||||++|++|+++.+...
T Consensus 87 p~~~~~~f~~l~l~~~l~~~l-~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~------ 159 (300)
T 3fmo_B 87 PLYSVKSFEELRLKPQLLQGV-YAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA------ 159 (300)
T ss_dssp CCCCCCCSGGGTCCHHHHHHH-HHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT------
T ss_pred CcCCcCCHhhcCCCHHHHHHH-HHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc------
Confidence 344567899999999999999 6789999999999999999987 9999999999999999999999988542
Q ss_pred CCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCce
Q 043110 108 SSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNL 187 (316)
Q Consensus 108 ~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l 187 (316)
..++++||++||++||.|+++.++.++.........+..++....... ..+++|+||||++|.+++.+.+.+.+.++
T Consensus 160 ~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l 236 (300)
T 3fmo_B 160 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKI 236 (300)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGC
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhc
Confidence 346679999999999999999999998776556667777766543221 45689999999999999987666777899
Q ss_pred eEEEEecchhhhc-CCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCC
Q 043110 188 RWIIFDEADRILE-LGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDE 264 (316)
Q Consensus 188 ~~lViDEad~l~~-~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 264 (316)
++|||||||+|++ .+|...+..|+..++. .+|+++||||+++.+..+++.++++|+.|.+..
T Consensus 237 ~~lVlDEad~l~~~~~~~~~~~~i~~~~~~---------------~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 237 KVFVLDEADVMIATQGHQDQSIRIQRMLPR---------------NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp SEEEETTHHHHHHSTTHHHHHHHHHTTSCT---------------TCEEEEEESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred eEEEEeCHHHHhhccCcHHHHHHHHHhCCC---------------CCEEEEEeccCCHHHHHHHHHHCCCCeEEEecC
Confidence 9999999999998 6899999999988876 899999999999999999999999999998754
No 3
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.1e-40 Score=287.04 Aligned_cols=211 Identities=34% Similarity=0.518 Sum_probs=177.1
Q ss_pred ccCCccc-CCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCe
Q 043110 33 ASCCFSS-LGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGT 111 (316)
Q Consensus 33 ~~~~f~~-~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~ 111 (316)
...+|++ ++++++++++| .++||.+|+++|.++++.+++|+|+++++|||+|||++|++|++..+...........++
T Consensus 17 p~~~f~~~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~ 95 (228)
T 3iuy_A 17 PTCRFKDAFQQYPDLLKSI-IRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGP 95 (228)
T ss_dssp CCCSHHHHHTTCHHHHHHH-HHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCC
T ss_pred ChhhHhhhhccCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCC
Confidence 3467888 79999999999 667999999999999999999999999999999999999999999886543333334577
Q ss_pred eEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEE
Q 043110 112 FALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWII 191 (316)
Q Consensus 112 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lV 191 (316)
++||++||++|+.|+++.++.+.. .........||.....+...+.++++|+|+||+++.+++.. ....+.+++++|
T Consensus 96 ~~lil~Pt~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~lV 172 (228)
T 3iuy_A 96 GMLVLTPTRELALHVEAECSKYSY--KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMN-NSVNLRSITYLV 172 (228)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHCC--TTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHT-TCCCCTTCCEEE
T ss_pred cEEEEeCCHHHHHHHHHHHHHhcc--cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcCcccceEEE
Confidence 899999999999999999998762 34566777888887777778888999999999999998876 455678899999
Q ss_pred EecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEc
Q 043110 192 FDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGL 262 (316)
Q Consensus 192 iDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~ 262 (316)
+||||++++++|...+..++..++. .+|++++|||+|+.+.++++.++++|+.|.+
T Consensus 173 iDEah~~~~~~~~~~~~~i~~~~~~---------------~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 173 IDEADKMLDMEFEPQIRKILLDVRP---------------DRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp ECCHHHHHHTTCHHHHHHHHHHSCS---------------SCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred EECHHHHhccchHHHHHHHHHhCCc---------------CCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 9999999999999999999999876 8899999999999999999999999998864
No 4
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=3.4e-40 Score=287.95 Aligned_cols=208 Identities=38% Similarity=0.657 Sum_probs=187.0
Q ss_pred ccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCee
Q 043110 33 ASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 112 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 112 (316)
...+|+++++++.+.+.| +++||..|+++|.++++.+++|+|+++.+|||+|||++|++|+++.+.... .+.+
T Consensus 41 ~~~~f~~l~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~------~~~~ 113 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEAC-DQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP------QRLF 113 (249)
T ss_dssp HHCCTGGGTCCHHHHHHH-HHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC------CSSC
T ss_pred ccCCHHHcCCCHHHHHHH-HHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC------CCce
Confidence 446799999999999999 778999999999999999999999999999999999999999999887632 3567
Q ss_pred EEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEE
Q 043110 113 ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIF 192 (316)
Q Consensus 113 ~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lVi 192 (316)
+||++||++|+.|+++.++.++...+ .....+.||.....+...+..+++|+|+||+++.+++.+...+.+.+++++|+
T Consensus 114 ~lil~Ptr~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 114 ALVLTPTRELAFQISEQFEALGSSIG-VQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHGGGT-CCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccCC-eeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 99999999999999999999887654 55667788888877777888899999999999999998756666788999999
Q ss_pred ecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcC
Q 043110 193 DEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLD 263 (316)
Q Consensus 193 DEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~ 263 (316)
||||++++++|...+..++..++. .+|++++|||+++.+.++++.++++|+.|.++
T Consensus 193 DEah~l~~~~~~~~l~~i~~~~~~---------------~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 193 DEADRILNMDFETEVDKILKVIPR---------------DRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp CSHHHHHHTTCHHHHHHHHHSSCS---------------SSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred cChhhhhccChHHHHHHHHHhCCC---------------CCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999988876 78999999999999999999999999998764
No 5
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=9.2e-40 Score=276.72 Aligned_cols=203 Identities=34% Similarity=0.504 Sum_probs=183.0
Q ss_pred CCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEE
Q 043110 35 CCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 114 (316)
Q Consensus 35 ~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 114 (316)
.+|+++++++++++.| ..+||..|+++|.++++.+++|+|+++.+|||+|||++|++|+++.+... ..++++|
T Consensus 3 ~~f~~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~------~~~~~~l 75 (206)
T 1vec_A 3 NEFEDYCLKRELLMGI-FEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK------KDNIQAM 75 (206)
T ss_dssp SSGGGSCCCHHHHHHH-HTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT------SCSCCEE
T ss_pred CChhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc------CCCeeEE
Confidence 5799999999999999 67899999999999999999999999999999999999999999887542 2356799
Q ss_pred EEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEec
Q 043110 115 VLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDE 194 (316)
Q Consensus 115 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDE 194 (316)
|++||++|+.|+++.++.+....+...+....|+.....+...+..+++|+|+||+++.+.+.+ ....+.+++++|+||
T Consensus 76 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lViDE 154 (206)
T 1vec_A 76 VIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK-GVAKVDHVQMIVLDE 154 (206)
T ss_dssp EECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEET
T ss_pred EEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHc-CCcCcccCCEEEEEC
Confidence 9999999999999999999876655677788888888877777778899999999999998876 445667899999999
Q ss_pred chhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEE
Q 043110 195 ADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260 (316)
Q Consensus 195 ad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i 260 (316)
||++.+.+|...+..++..++. .+|++++|||+|+.+.++++.++++|+.|
T Consensus 155 ah~~~~~~~~~~l~~i~~~~~~---------------~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 155 ADKLLSQDFVQIMEDIILTLPK---------------NRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HHHHTSTTTHHHHHHHHHHSCT---------------TCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hHHhHhhCcHHHHHHHHHhCCc---------------cceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999999999999999999876 78999999999999999999999999876
No 6
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=2e-39 Score=279.68 Aligned_cols=207 Identities=30% Similarity=0.441 Sum_probs=180.4
Q ss_pred ccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCee
Q 043110 33 ASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 112 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 112 (316)
...+|+++++++.+.+.| +++||..|+++|.++++.+++|+|+++.+|||+|||++|++|+++.+... ..+.+
T Consensus 22 ~~~~f~~l~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~------~~~~~ 94 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGL-RAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE------NLSTQ 94 (230)
T ss_dssp --CCGGGGTCCHHHHHHH-HHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT------SCSCC
T ss_pred CCCCHhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc------CCCce
Confidence 346799999999999999 67899999999999999999999999999999999999999999987542 23567
Q ss_pred EEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEE
Q 043110 113 ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIF 192 (316)
Q Consensus 113 ~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lVi 192 (316)
+||++||++|+.|+++.++.++.......+....||.....+...+ .+++|+|+||+++.+++.. ....+.+++++|+
T Consensus 95 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~-~~~~~~~~~~lVi 172 (230)
T 2oxc_A 95 ILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIEL-DYLNPGSIRLFIL 172 (230)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHT-TSSCGGGCCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhc-CCcccccCCEEEe
Confidence 9999999999999999999988665456677777887776655544 4789999999999998876 4555678999999
Q ss_pred ecchhhhcCC-cHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcC
Q 043110 193 DEADRILELG-FGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLD 263 (316)
Q Consensus 193 DEad~l~~~~-~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~ 263 (316)
||||++++++ |...+..+++.++. .+|++++|||+++.+.+++..++.+|+.|.++
T Consensus 173 DEah~~~~~~~~~~~~~~i~~~~~~---------------~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~~ 229 (230)
T 2oxc_A 173 DEADKLLEEGSFQEQINWIYSSLPA---------------SKQMLAVSATYPEFLANALTKYMRDPTFVRLN 229 (230)
T ss_dssp SSHHHHHSTTSSHHHHHHHHHHSCS---------------SCEEEEEESCCCHHHHHHHTTTCSSCEEECC-
T ss_pred CCchHhhcCcchHHHHHHHHHhCCC---------------CCeEEEEEeccCHHHHHHHHHHcCCCeEEEcC
Confidence 9999999997 99999999999876 78999999999999999999999999998764
No 7
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.5e-39 Score=280.00 Aligned_cols=213 Identities=36% Similarity=0.604 Sum_probs=182.8
Q ss_pred ccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCee
Q 043110 33 ASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 112 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 112 (316)
...+|+++++++.+.+.| ..+||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+..... ....+.+
T Consensus 23 ~~~~f~~~~l~~~l~~~l-~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~--~~~~~~~ 99 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGL-QEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW--TSTDGLG 99 (236)
T ss_dssp GCSBGGGSCCCHHHHHHH-HHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC--CGGGCCC
T ss_pred ccCCHhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc--cccCCce
Confidence 346799999999999999 6789999999999999999999999999999999999999999998865322 1124677
Q ss_pred EEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEE
Q 043110 113 ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIF 192 (316)
Q Consensus 113 ~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lVi 192 (316)
+||++||++|+.|+++.++.++...+ ..+....|+.....+...+ .+++|+|+||+++.+++.......+.+++++|+
T Consensus 100 ~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 100 VLIISPTRELAYQTFEVLRKVGKNHD-FSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSS-CCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhCCCC-eeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 99999999999999999999876543 4556677777766665555 578999999999999987755566788999999
Q ss_pred ecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCC
Q 043110 193 DEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265 (316)
Q Consensus 193 DEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 265 (316)
||||++.+++|...+..++..++. .+|++++|||+++.+.++++.++.+|+.|.++++
T Consensus 178 DEah~~~~~~~~~~~~~i~~~~~~---------------~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~ 235 (236)
T 2pl3_A 178 DEADRILDMGFADTMNAVIENLPK---------------KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEK 235 (236)
T ss_dssp TTHHHHHHTTTHHHHHHHHHTSCT---------------TSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC-
T ss_pred eChHHHhcCCcHHHHHHHHHhCCC---------------CCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 999999999999999999998876 8899999999999999999999999999987653
No 8
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.2e-39 Score=282.33 Aligned_cols=208 Identities=31% Similarity=0.448 Sum_probs=171.6
Q ss_pred ccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCee
Q 043110 33 ASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 112 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 112 (316)
...+|+++++++.+.+.| ..+||..|+++|.++++.+++|+|+++.+|||+|||++|++|+++.+... ..+.+
T Consensus 28 ~~~~f~~l~l~~~l~~~l-~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~------~~~~~ 100 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGI-YAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE------FKETQ 100 (237)
T ss_dssp CCCSGGGSCCCHHHHHHH-HHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT------SCSCC
T ss_pred ccCChhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc------CCCce
Confidence 346799999999999999 67899999999999999999999999999999999999999999987542 23567
Q ss_pred EEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcC-CcEEEeCcHHHHHHHhcCCccccCceeEEE
Q 043110 113 ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKG-ISILVATPGHLLDHLKHTSSFLHTNLRWII 191 (316)
Q Consensus 113 ~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lV 191 (316)
+||++||++|+.|+++.++.++...+ ..+....||.....+...+..+ ++|+|+||+++.+++.. ....+.+++++|
T Consensus 101 ~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~~lV 178 (237)
T 3bor_A 101 ALVLAPTRELAQQIQKVILALGDYMG-ATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMFV 178 (237)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTT-CCEEEECC-------------CCCSEEEECHHHHHHHHHT-TSSCSTTCCEEE
T ss_pred EEEEECcHHHHHHHHHHHHHHhhhcC-ceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh-CCcCcccCcEEE
Confidence 99999999999999999999876543 4555667777766666666555 89999999999999876 445567899999
Q ss_pred EecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCC
Q 043110 192 FDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDE 264 (316)
Q Consensus 192 iDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 264 (316)
+||||++++++|...+..+++.++. .+|++++|||+|+++.++++.++++|+.|.++.
T Consensus 179 iDEah~~~~~~~~~~l~~i~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~~ 236 (237)
T 3bor_A 179 LDEADEMLSRGFKDQIYEIFQKLNT---------------SIQVVLLSATMPTDVLEVTKKFMRDPIRILVKK 236 (237)
T ss_dssp EESHHHHHHTTCHHHHHHHHHHSCT---------------TCEEEEECSSCCHHHHHHHHHHCSSCEEEC---
T ss_pred ECCchHhhccCcHHHHHHHHHhCCC---------------CCeEEEEEEecCHHHHHHHHHHCCCCEEEEecC
Confidence 9999999999999999999998876 889999999999999999999999999997653
No 9
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=5.8e-40 Score=280.92 Aligned_cols=209 Identities=28% Similarity=0.471 Sum_probs=180.3
Q ss_pred cCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeE
Q 043110 34 SCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 113 (316)
Q Consensus 34 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 113 (316)
..+|+++++++.+.+.| +++||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+... ..+.++
T Consensus 3 ~~~f~~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~------~~~~~~ 75 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAI-KTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE------RAEVQA 75 (219)
T ss_dssp -CCGGGSCCCHHHHHHH-HHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT------SCSCCE
T ss_pred CCCHhhCCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC------cCCceE
Confidence 35799999999999999 77899999999999999999999999999999999999999999987542 235679
Q ss_pred EEEeCChHHHHHHHHHHHHHHhhcC---CceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEE
Q 043110 114 LVLVPTSELCLLVYEILQKLLHRFR---WIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWI 190 (316)
Q Consensus 114 lil~Pt~~L~~Q~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~l 190 (316)
||++||++|+.|+++.+++++.... ........||.........+..+++|+|+||+++.+++.. ....+.+++++
T Consensus 76 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~~~l 154 (219)
T 1q0u_A 76 VITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE-QALDVHTAHIL 154 (219)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT-TCCCGGGCCEE
T ss_pred EEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHc-CCCCcCcceEE
Confidence 9999999999999999999986542 3455666777665555444556789999999999998876 44566789999
Q ss_pred EEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCC
Q 043110 191 IFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265 (316)
Q Consensus 191 ViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 265 (316)
|+||||++.+++|...+..++..++. .+|++++|||+|+++.++++.++.+|+.|.+...
T Consensus 155 ViDEah~~~~~~~~~~l~~i~~~~~~---------------~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~~ 214 (219)
T 1q0u_A 155 VVDEADLMLDMGFITDVDQIAARMPK---------------DLQMLVFSATIPEKLKPFLKKYMENPTFVHVLEH 214 (219)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHTSCT---------------TCEEEEEESCCCGGGHHHHHHHCSSCEEEECC--
T ss_pred EEcCchHHhhhChHHHHHHHHHhCCc---------------ccEEEEEecCCCHHHHHHHHHHcCCCeEEEeecc
Confidence 99999999999999999999998876 7899999999999999999999999999987654
No 10
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.6e-39 Score=284.51 Aligned_cols=210 Identities=40% Similarity=0.705 Sum_probs=181.2
Q ss_pred cccCCcccCC--CCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCC
Q 043110 32 FASCCFSSLG--LDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSS 109 (316)
Q Consensus 32 ~~~~~f~~~~--l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~ 109 (316)
+...+|++++ +++.+++.| +.+||..|+++|.++++.++.|+|++++||||||||++|++|+++.+...... ...
T Consensus 49 ~~~~~f~~l~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~--~~~ 125 (262)
T 3ly5_A 49 FEDTSFASLCNLVNENTLKAI-KEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM--PRN 125 (262)
T ss_dssp SGGGCC-----CCCHHHHHHH-HHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC--GGG
T ss_pred cccCChhHhccccCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc--ccC
Confidence 4556788887 999999999 67899999999999999999999999999999999999999999988763321 123
Q ss_pred CeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeE
Q 043110 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRW 189 (316)
Q Consensus 110 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~ 189 (316)
+.++||++||++|+.|+++.+++++.... .......|+.....+...+..+++|+|+||+++.+++.......+.++++
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~ 204 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHV-HTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQC 204 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCC-SCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcC-ceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCE
Confidence 66799999999999999999999987644 55667788888888888888889999999999999998766667789999
Q ss_pred EEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCC-CEEE
Q 043110 190 IIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLET-PVLI 260 (316)
Q Consensus 190 lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~-p~~i 260 (316)
+|+||||++++++|...+..+++.++. .+|+++||||+++.+.++++.++++ |++|
T Consensus 205 lViDEah~l~~~~~~~~l~~i~~~~~~---------------~~q~l~~SAT~~~~v~~~~~~~l~~~~~~v 261 (262)
T 3ly5_A 205 LVIDEADRILDVGFEEELKQIIKLLPT---------------RRQTMLFSATQTRKVEDLARISLKKEPLYV 261 (262)
T ss_dssp EEECSHHHHHHTTCHHHHHHHHHHSCS---------------SSEEEEECSSCCHHHHHHHHHHCSSCCEEC
T ss_pred EEEcChHHHhhhhHHHHHHHHHHhCCC---------------CCeEEEEEecCCHHHHHHHHHHcCCCCeee
Confidence 999999999999999999999999987 8899999999999999999999874 4544
No 11
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=1.5e-39 Score=284.40 Aligned_cols=220 Identities=31% Similarity=0.504 Sum_probs=185.8
Q ss_pred ccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCC---CCCC
Q 043110 33 ASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRI---DRSS 109 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~---~~~~ 109 (316)
...+|+++++++.++++| .++||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+....... ....
T Consensus 21 ~~~~f~~l~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~ 99 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNI-LLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTA 99 (253)
T ss_dssp CCCSSGGGSCCCSTTTTT-TTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCB
T ss_pred ccCCHhhCCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccC
Confidence 345799999999999999 778999999999999999999999999999999999999999999987543211 1234
Q ss_pred CeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeE
Q 043110 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRW 189 (316)
Q Consensus 110 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~ 189 (316)
++++||++||++|+.|+++.++.++...+ .......||.....+...+..+++|+|+||+++.+++.. ....+.++++
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~ 177 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTP-LRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK-NKISLEFCKY 177 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSS-CCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHT-TSBCCTTCCE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCC-ceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCCChhhCCE
Confidence 56899999999999999999999886543 556677888888888888888899999999999999876 4456688999
Q ss_pred EEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCC
Q 043110 190 IIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKK 266 (316)
Q Consensus 190 lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~ 266 (316)
+|+||||++++++|...+..++..+.. .....+|++++|||+++++.++++.++.+|+.|.++...
T Consensus 178 lViDEah~~~~~~~~~~~~~i~~~~~~-----------~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~ 243 (253)
T 1wrb_A 178 IVLDEADRMLDMGFEPQIRKIIEESNM-----------PSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVG 243 (253)
T ss_dssp EEEETHHHHHHTTCHHHHHHHHHSSCC-----------CCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC---
T ss_pred EEEeCHHHHHhCchHHHHHHHHhhccC-----------CCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCC
Confidence 999999999999999999999985432 011267999999999999999999999999999887654
No 12
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=9.3e-39 Score=270.62 Aligned_cols=205 Identities=36% Similarity=0.534 Sum_probs=181.5
Q ss_pred CcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEE
Q 043110 36 CFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALV 115 (316)
Q Consensus 36 ~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~li 115 (316)
+|+++++++++.+.| +++||..|+++|.++++.+++|+|+++.+|||+|||++|++|+++.+..... ...++++||
T Consensus 2 ~f~~~~l~~~l~~~l-~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~---~~~~~~~li 77 (207)
T 2gxq_A 2 EFKDFPLKPEILEAL-HGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE---RGRKPRALV 77 (207)
T ss_dssp CGGGSCCCHHHHHHH-HHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC---TTCCCSEEE
T ss_pred ChhhcCCCHHHHHHH-HHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc---cCCCCcEEE
Confidence 699999999999999 6789999999999999999999999999999999999999999998864221 234678999
Q ss_pred EeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecc
Q 043110 116 LVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEA 195 (316)
Q Consensus 116 l~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEa 195 (316)
++|+++|+.|+++.++.++.. .......|+.....+...+..+++|+|+||+++.+++.. ....+.+++++|+|||
T Consensus 78 l~P~~~L~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEa 153 (207)
T 2gxq_A 78 LTPTRELALQVASELTAVAPH---LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ-GVLDLSRVEVAVLDEA 153 (207)
T ss_dssp ECSSHHHHHHHHHHHHHHCTT---SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH-TSSCCTTCSEEEEESH
T ss_pred EECCHHHHHHHHHHHHHHhhc---ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc-CCcchhhceEEEEECh
Confidence 999999999999999988643 455677788887777777778899999999999999876 4556788999999999
Q ss_pred hhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcC
Q 043110 196 DRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLD 263 (316)
Q Consensus 196 d~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~ 263 (316)
|++.+.+|...+..++..++. .+|++++|||+++.+.++++.++.+|+.|.++
T Consensus 154 h~~~~~~~~~~~~~i~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 206 (207)
T 2gxq_A 154 DEMLSMGFEEEVEALLSATPP---------------SRQTLLFSATLPSWAKRLAERYMKNPVLINVI 206 (207)
T ss_dssp HHHHHTTCHHHHHHHHHTSCT---------------TSEEEEECSSCCHHHHHHHHHHCSSCEEEECC
T ss_pred hHhhccchHHHHHHHHHhCCc---------------cCeEEEEEEecCHHHHHHHHHHcCCCeEEEcC
Confidence 999999999999999988776 78999999999999999999999999998764
No 13
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.5e-38 Score=299.09 Aligned_cols=222 Identities=28% Similarity=0.502 Sum_probs=192.6
Q ss_pred cCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeE
Q 043110 34 SCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 113 (316)
Q Consensus 34 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 113 (316)
..+|++++|++.+++.| +++||.+|+|+|+++||.+++|+|++++||||||||++|++|+++.+...... ....++++
T Consensus 55 ~~~f~~~~l~~~l~~~l-~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~-~~~~~~~~ 132 (434)
T 2db3_A 55 IQHFTSADLRDIIIDNV-NKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE-LELGRPQV 132 (434)
T ss_dssp CCCGGGSCCCHHHHHHH-HHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC-CCTTCCSE
T ss_pred cCChhhcCCCHHHHHHH-HHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc-cccCCccE
Confidence 45799999999999999 67899999999999999999999999999999999999999999998764322 22346789
Q ss_pred EEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEe
Q 043110 114 LVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFD 193 (316)
Q Consensus 114 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViD 193 (316)
||++||++|+.|+++.+++++... ...+.+++||.....+...+..+++|+|+||++|.+++.+ ....+.+++++|+|
T Consensus 133 lil~PtreLa~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~~~~lVlD 210 (434)
T 2db3_A 133 VIVSPTRELAIQIFNEARKFAFES-YLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDR-TFITFEDTRFVVLD 210 (434)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTS-SCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHT-TSCCCTTCCEEEEE
T ss_pred EEEecCHHHHHHHHHHHHHHhccC-CcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHh-CCcccccCCeEEEc
Confidence 999999999999999999988654 3566788899998888888888999999999999999986 44567899999999
Q ss_pred cchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCCCCCCCC
Q 043110 194 EADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKS 272 (316)
Q Consensus 194 Ead~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~~~~~~~ 272 (316)
|||+|++++|...+..++..+.. .+.+|+++||||+|+.+..++..++.+|+.+.+..........
T Consensus 211 Eah~~~~~gf~~~~~~i~~~~~~-------------~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i 276 (434)
T 2db3_A 211 EADRMLDMGFSEDMRRIMTHVTM-------------RPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDV 276 (434)
T ss_dssp THHHHTSTTTHHHHHHHHHCTTS-------------CSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTE
T ss_pred cHhhhhccCcHHHHHHHHHhcCC-------------CCCceEEEEeccCCHHHHHHHHHhccCCEEEEecccccccccc
Confidence 99999999999999999987532 1278999999999999999999999999999887654333333
No 14
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.5e-38 Score=272.73 Aligned_cols=207 Identities=31% Similarity=0.506 Sum_probs=171.4
Q ss_pred CCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEE
Q 043110 35 CCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 114 (316)
Q Consensus 35 ~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 114 (316)
.+|+++++++.+++.| .++||..|+++|.++++.+++|+|+++.+|||+|||++|++|+++.+... ..+.++|
T Consensus 14 ~~f~~l~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~------~~~~~~l 86 (224)
T 1qde_A 14 YKFDDMELDENLLRGV-FGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS------VKAPQAL 86 (224)
T ss_dssp CCGGGGTCCHHHHHHH-HHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT------CCSCCEE
T ss_pred CChhhcCCCHHHHHHH-HHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc------CCCceEE
Confidence 5799999999999999 67899999999999999999999999999999999999999999988542 2356799
Q ss_pred EEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEec
Q 043110 115 VLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDE 194 (316)
Q Consensus 115 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDE 194 (316)
|++|+++|+.|+++.++.++...+ .......|+.....+...+. .++|+|+||+++.+.+.+ ....+.+++++|+||
T Consensus 87 il~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~iViDE 163 (224)
T 1qde_A 87 MLAPTRELALQIQKVVMALAFHMD-IKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQR-RRFRTDKIKMFILDE 163 (224)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSC-CCEEEECC----------CT-TCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEET
T ss_pred EEECCHHHHHHHHHHHHHHhcccC-ceEEEEeCCcchHHHHhcCC-CCCEEEECHHHHHHHHHh-CCcchhhCcEEEEcC
Confidence 999999999999999999876543 45566667766555544443 489999999999998876 455667899999999
Q ss_pred chhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCC
Q 043110 195 ADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKK 266 (316)
Q Consensus 195 ad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~ 266 (316)
||++.+++|...+..++..++. .+|++++|||+++++.++++.++.+|+.|.++.+.
T Consensus 164 ah~~~~~~~~~~l~~i~~~~~~---------------~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~~ 220 (224)
T 1qde_A 164 ADEMLSSGFKEQIYQIFTLLPP---------------TTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDE 220 (224)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCT---------------TCEEEEEESSCCHHHHHHHHHHCSSCEEEC-----
T ss_pred hhHHhhhhhHHHHHHHHHhCCc---------------cCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCCc
Confidence 9999999999999999998876 88999999999999999999999999999877653
No 15
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.9e-38 Score=270.37 Aligned_cols=206 Identities=27% Similarity=0.458 Sum_probs=179.1
Q ss_pred cCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeE
Q 043110 34 SCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 113 (316)
Q Consensus 34 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 113 (316)
..+|+++++++.+.+.| .++||..|+++|.++++.+++|+|+++.+|||+|||++|++|++..+... ..+.++
T Consensus 13 ~~~f~~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~------~~~~~~ 85 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAI-VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV------TGQVSV 85 (220)
T ss_dssp -CCSTTSCCCHHHHHHH-HHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC------TTCCCE
T ss_pred CCCHhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc------CCCEEE
Confidence 35799999999999999 67899999999999999999999999999999999999999999887542 234579
Q ss_pred EEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhc-CCcEEEeCcHHHHHHHhcCCccccCceeEEEE
Q 043110 114 LVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRK-GISILVATPGHLLDHLKHTSSFLHTNLRWIIF 192 (316)
Q Consensus 114 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lVi 192 (316)
||++||++|+.|+++.++++........+....|+.....+...+.. .++|+|+||+++.+++.. ....+.+++++|+
T Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lVi 164 (220)
T 1t6n_A 86 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFIL 164 (220)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh-CCCCcccCCEEEE
Confidence 99999999999999999998876545677778888887766666654 479999999999998876 4556788999999
Q ss_pred ecchhhhc-CCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEc
Q 043110 193 DEADRILE-LGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGL 262 (316)
Q Consensus 193 DEad~l~~-~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~ 262 (316)
||||++++ .+|...+..++..++. .+|++++|||+++.+.++++.++.+|+.|.+
T Consensus 165 DEah~~~~~~~~~~~~~~i~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~v 220 (220)
T 1t6n_A 165 DECDKMLEQLDMRRDVQEIFRMTPH---------------EKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 220 (220)
T ss_dssp ESHHHHHSSHHHHHHHHHHHHTSCS---------------SSEEEEEESCCCTTTHHHHHTTCSSCEEEEC
T ss_pred cCHHHHhcccCcHHHHHHHHHhCCC---------------cCeEEEEEeecCHHHHHHHHHHcCCCeEEeC
Confidence 99999987 4788888888887765 7899999999999999999999999998853
No 16
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-38 Score=275.67 Aligned_cols=210 Identities=30% Similarity=0.495 Sum_probs=170.2
Q ss_pred CCcccC----CCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCC
Q 043110 35 CCFSSL----GLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSG 110 (316)
Q Consensus 35 ~~f~~~----~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~ 110 (316)
.+|+++ ++++.+++.+ .++||..|+++|.++++.+++|+|+++.+|||+|||++|++|+++.+... ...+
T Consensus 25 ~~f~~l~~~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-----~~~~ 98 (245)
T 3dkp_A 25 ATFQQLDQEYKINSRLLQNI-LDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQP-----ANKG 98 (245)
T ss_dssp SSHHHHHHHHCCCHHHHHHH-HHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSC-----CSSS
T ss_pred cCHHHhhhccCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhc-----ccCC
Confidence 457766 8999999999 66899999999999999999999999999999999999999999988542 2346
Q ss_pred eeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHH-HHHHhcCCcEEEeCcHHHHHHHhcCC-ccccCcee
Q 043110 111 TFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKE-KARLRKGISILVATPGHLLDHLKHTS-SFLHTNLR 188 (316)
Q Consensus 111 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~IlV~Tp~~l~~~l~~~~-~~~~~~l~ 188 (316)
.++||++||++|+.|+++.++.++...+ .......++...... ......+++|+|+||+++.+++.... ...+.+++
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~ 177 (245)
T 3dkp_A 99 FRALIISPTRELASQIHRELIKISEGTG-FRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVE 177 (245)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSC-CCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccC-ceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCc
Confidence 6799999999999999999999876544 333333332211111 11123468999999999999997753 45678899
Q ss_pred EEEEecchhhhc---CCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCC
Q 043110 189 WIIFDEADRILE---LGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265 (316)
Q Consensus 189 ~lViDEad~l~~---~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 265 (316)
++|+||||++++ .+|...+..++..+... +.|+++||||+|+++.++++.++++|+.|.++..
T Consensus 178 ~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~--------------~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 178 WLVVDESDKLFEDGKTGFRDQLASIFLACTSH--------------KVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp EEEESSHHHHHHHC--CHHHHHHHHHHHCCCT--------------TCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred EEEEeChHHhcccccccHHHHHHHHHHhcCCC--------------CcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 999999999998 47888888887766431 6899999999999999999999999999998764
No 17
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.3e-35 Score=275.06 Aligned_cols=222 Identities=31% Similarity=0.508 Sum_probs=184.9
Q ss_pred cCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCC---------
Q 043110 34 SCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPR--------- 104 (316)
Q Consensus 34 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~--------- 104 (316)
..+|+++++++.+.++| +.+||..|+|+|+++||.++.|+|+++.+|||+|||++|++|+++.+......
T Consensus 14 ~~~f~~~~l~~~l~~~l-~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~ 92 (417)
T 2i4i_A 14 IESFSDVEMGEIIMGNI-ELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKEN 92 (417)
T ss_dssp CSSGGGSCCCHHHHHHH-HHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHC
T ss_pred cCCHhhCCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccc
Confidence 35699999999999999 67899999999999999999999999999999999999999999988654321
Q ss_pred ---CCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCc
Q 043110 105 ---IDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSS 181 (316)
Q Consensus 105 ---~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~ 181 (316)
.....++++||++||++|+.|+++.++.++...+ .......||.....+...+..+++|+|+||++|.+++.. ..
T Consensus 93 ~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~ 170 (417)
T 2i4i_A 93 GRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSR-VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER-GK 170 (417)
T ss_dssp BTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSS-CCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHT-TS
T ss_pred cccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCC-ceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHc-CC
Confidence 1122346799999999999999999999886543 566778888888888888888899999999999999886 44
Q ss_pred cccCceeEEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEE
Q 043110 182 FLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIG 261 (316)
Q Consensus 182 ~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~ 261 (316)
..+.+++++|+||||++++++|...+..++..... .....+|++++|||+++.+..+...++.+|..+.
T Consensus 171 ~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~-----------~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 239 (417)
T 2i4i_A 171 IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM-----------PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLA 239 (417)
T ss_dssp BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSC-----------CCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEE
T ss_pred cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccC-----------CCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEE
Confidence 56778999999999999999999999888864321 1122679999999999999999999999999888
Q ss_pred cCCCCCCC
Q 043110 262 LDEKKFPE 269 (316)
Q Consensus 262 ~~~~~~~~ 269 (316)
+.......
T Consensus 240 ~~~~~~~~ 247 (417)
T 2i4i_A 240 VGRVGSTS 247 (417)
T ss_dssp EC----CC
T ss_pred eCCCCCCc
Confidence 76554333
No 18
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.5e-35 Score=275.95 Aligned_cols=217 Identities=28% Similarity=0.476 Sum_probs=188.4
Q ss_pred cccccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCC
Q 043110 30 EIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSS 109 (316)
Q Consensus 30 ~~~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~ 109 (316)
+.....+|+++++++.+.+.| ..+||..|+|+|+++++.+++|+|+++.+|||+|||++|++|+++.+... ..
T Consensus 32 ~~~~~~~f~~~~l~~~l~~~l-~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~------~~ 104 (410)
T 2j0s_A 32 EVDVTPTFDTMGLREDLLRGI-YAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VR 104 (410)
T ss_dssp TCCCCCSGGGGCCCHHHHHHH-HHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT------SC
T ss_pred CccCCCCHhhcCCCHHHHHHH-HHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc------cC
Confidence 334456899999999999999 67899999999999999999999999999999999999999999877431 23
Q ss_pred CeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeE
Q 043110 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRW 189 (316)
Q Consensus 110 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~ 189 (316)
+.++||++||++|+.|+++.++.++...+ ..+....||.....+...+..+++|+|+||+++.+++.. ....+..+++
T Consensus 105 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~-~~~~~~~~~~ 182 (410)
T 2j0s_A 105 ETQALILAPTRELAVQIQKGLLALGDYMN-VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR-RSLRTRAIKM 182 (410)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTT-CCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT-TSSCCTTCCE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCC-eEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHh-CCccHhheeE
Confidence 56799999999999999999999886644 556677888888888888888899999999999999986 4556678999
Q ss_pred EEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCCCCC
Q 043110 190 IIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPE 269 (316)
Q Consensus 190 lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~~~~ 269 (316)
+|+||||++++++|...+..++..++. ..|++++|||+++.+.++...++.+|..+.+.......
T Consensus 183 vViDEah~~~~~~~~~~~~~i~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (410)
T 2j0s_A 183 LVLDEADEMLNKGFKEQIYDVYRYLPP---------------ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTL 247 (410)
T ss_dssp EEEETHHHHTSTTTHHHHHHHHTTSCT---------------TCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSC
T ss_pred EEEccHHHHHhhhhHHHHHHHHHhCcc---------------CceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccC
Confidence 999999999999999999999887766 78999999999999999999999999988776655444
Q ss_pred C
Q 043110 270 D 270 (316)
Q Consensus 270 ~ 270 (316)
.
T Consensus 248 ~ 248 (410)
T 2j0s_A 248 E 248 (410)
T ss_dssp T
T ss_pred C
Confidence 3
No 19
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=4.5e-34 Score=265.64 Aligned_cols=220 Identities=23% Similarity=0.412 Sum_probs=185.8
Q ss_pred cccccccccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CcEEEEcCCCCchHHHHHHHHHHHhhhcCC
Q 043110 26 ETVKEIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSG--RDVLVNAATGTGKTVAYLAPIINHLQSYSP 103 (316)
Q Consensus 26 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~ 103 (316)
....+.....+|+++++++.+++.| .++||..|+|+|.++++.++.+ +++++.+|||+|||++|++|+++.+...
T Consensus 16 ~~~~~~~~~~~f~~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-- 92 (412)
T 3fht_A 16 DPNSPLYSVKSFEELRLKPQLLQGV-YAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-- 92 (412)
T ss_dssp CTTSTTCCSSCTGGGTCCHHHHHHH-HHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT--
T ss_pred cCCCCccccCCHhhCCCCHHHHHHH-HHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc--
Confidence 4445566778999999999999999 6789999999999999999987 8999999999999999999999887542
Q ss_pred CCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccc
Q 043110 104 RIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFL 183 (316)
Q Consensus 104 ~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~ 183 (316)
..++++||++|+++|+.|+++.++.+.............++....... ...++|+|+||+++.+++.+.....
T Consensus 93 ----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~ 165 (412)
T 3fht_A 93 ----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFID 165 (412)
T ss_dssp ----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSC
T ss_pred ----CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcC
Confidence 235579999999999999999999998766556666666665443221 3457999999999999997766677
Q ss_pred cCceeEEEEecchhhhc-CCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEc
Q 043110 184 HTNLRWIIFDEADRILE-LGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGL 262 (316)
Q Consensus 184 ~~~l~~lViDEad~l~~-~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~ 262 (316)
+.+++++|+||||++++ .++...+..+...++. ..|++++|||+++.+..+...++.+|..+.+
T Consensus 166 ~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 230 (412)
T 3fht_A 166 PKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR---------------NCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 230 (412)
T ss_dssp GGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCT---------------TCEEEEEESCCCHHHHHHHHHHSSSCEEECC
T ss_pred hhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCC---------------CceEEEEEeecCHHHHHHHHHhcCCCeEEee
Confidence 78999999999999997 6888888888888776 7899999999999999999999999999887
Q ss_pred CCCCCCCC
Q 043110 263 DEKKFPED 270 (316)
Q Consensus 263 ~~~~~~~~ 270 (316)
........
T Consensus 231 ~~~~~~~~ 238 (412)
T 3fht_A 231 KREEETLD 238 (412)
T ss_dssp CGGGSSCT
T ss_pred cccccccc
Confidence 76554443
No 20
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=274.60 Aligned_cols=219 Identities=23% Similarity=0.410 Sum_probs=178.3
Q ss_pred ccccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCC
Q 043110 31 IFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSG--RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRS 108 (316)
Q Consensus 31 ~~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~ 108 (316)
.....+|++++|++.+++.| ..+||..|+|+|.+++|.++.| +|++++||||||||++|++|+++.+... .
T Consensus 88 ~~~~~~f~~~~l~~~l~~~l-~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~------~ 160 (479)
T 3fmp_B 88 LYSVKSFEELRLKPQLLQGV-YAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA------N 160 (479)
T ss_dssp CCCCCCSGGGTCCHHHHHHH-HHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT------S
T ss_pred ccCcCCHHHcCCCHHHHHHH-HHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc------C
Confidence 34556899999999999999 6789999999999999999987 8999999999999999999999877542 2
Q ss_pred CCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCcee
Q 043110 109 SGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLR 188 (316)
Q Consensus 109 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~ 188 (316)
.++++||++||++|+.|+++.++.+..........+..++....... ..+++|+|+||++|.+++.+...+.+.+++
T Consensus 161 ~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~ 237 (479)
T 3fmp_B 161 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIK 237 (479)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCGGGCC
T ss_pred CCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCcccCC
Confidence 35579999999999999999999998776556666666665432211 335789999999999999876677778999
Q ss_pred EEEEecchhhhc-CCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCCC
Q 043110 189 WIIFDEADRILE-LGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKF 267 (316)
Q Consensus 189 ~lViDEad~l~~-~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~~ 267 (316)
+||+||||++++ .+|...+..+...++. .+|++++|||++..+..++..++.+|..+.+.....
T Consensus 238 ~iViDEah~~~~~~~~~~~~~~i~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~ 302 (479)
T 3fmp_B 238 VFVLDEADVMIATQGHQDQSIRIQRMLPR---------------NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE 302 (479)
T ss_dssp EEEECCHHHHHTSTTHHHHHHHHHTTSCT---------------TSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----
T ss_pred EEEEECHHHHhhcCCcHHHHHHHHhhCCc---------------cceEEEEeCCCCHHHHHHHHHHcCCCeEEecccccc
Confidence 999999999997 5888888888877766 889999999999999999999999999998876654
Q ss_pred CCCCCCc
Q 043110 268 PEDKSNV 274 (316)
Q Consensus 268 ~~~~~~~ 274 (316)
.......
T Consensus 303 ~~~~~~~ 309 (479)
T 3fmp_B 303 TLDTIKQ 309 (479)
T ss_dssp -------
T ss_pred CcCCceE
Confidence 4443333
No 21
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=262.80 Aligned_cols=219 Identities=29% Similarity=0.443 Sum_probs=188.4
Q ss_pred CCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEE
Q 043110 35 CCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 114 (316)
Q Consensus 35 ~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 114 (316)
.+|+++++++.+.+.| .++||..|+++|+++++.++.|+|+++.+|||+|||++|++|+++.+... ..+.++|
T Consensus 40 ~~f~~~~l~~~~~~~l-~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~------~~~~~~l 112 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGI-YAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD------LKATQAL 112 (414)
T ss_dssp CCGGGGCCCHHHHHHH-HHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT------SCSCCEE
T ss_pred cCHhhCCCCHHHHHHH-HHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc------CCceeEE
Confidence 6799999999999999 67899999999999999999999999999999999999999999887542 2356699
Q ss_pred EEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHh-cCCcEEEeCcHHHHHHHhcCCccccCceeEEEEe
Q 043110 115 VLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLR-KGISILVATPGHLLDHLKHTSSFLHTNLRWIIFD 193 (316)
Q Consensus 115 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViD 193 (316)
|++|+++|+.|+++.++.++...+ ..+....|+.....+...+. .+++|+|+||++|.+++.. ....+..++++|+|
T Consensus 113 il~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~~vViD 190 (414)
T 3eiq_A 113 VLAPTRELAQQIQKVVMALGDYMG-ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLD 190 (414)
T ss_dssp EECSSHHHHHHHHHHHHHHGGGSC-CCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH-TSSCSTTCCEEEEC
T ss_pred EEeChHHHHHHHHHHHHHHhcccC-ceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccCcEEEEE
Confidence 999999999999999999887654 55666778887777766665 6789999999999999876 44556789999999
Q ss_pred cchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCCCCCCCCC
Q 043110 194 EADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKSN 273 (316)
Q Consensus 194 Ead~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~~~~~~~~ 273 (316)
|||++.+++|...+..++..++. ..|++++|||++..+..+...++.+|..+.+...........
T Consensus 191 Eah~~~~~~~~~~~~~~~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (414)
T 3eiq_A 191 EADEMLSRGFKDQIYDIFQKLNS---------------NTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIR 255 (414)
T ss_dssp SHHHHHHTTTHHHHHHHHTTSCT---------------TCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCC
T ss_pred CHHHhhccCcHHHHHHHHHhCCC---------------CCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCce
Confidence 99999999999999999888776 889999999999999999999999999988776665554444
Q ss_pred cccc
Q 043110 274 VHFG 277 (316)
Q Consensus 274 ~~~~ 277 (316)
..+.
T Consensus 256 ~~~~ 259 (414)
T 3eiq_A 256 QFYI 259 (414)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4333
No 22
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=9e-34 Score=275.69 Aligned_cols=219 Identities=32% Similarity=0.462 Sum_probs=181.1
Q ss_pred CCcccCC----CCHHHHHHHHHHcCCCCCcHHHHHHHHHHh--CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCC
Q 043110 35 CCFSSLG----LDSTLCDQLRERLGFEAPTKVQAQAIPVIL--SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRS 108 (316)
Q Consensus 35 ~~f~~~~----l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il--~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~ 108 (316)
.+|+++. |+++++++| +++||..|+|+|.++|+.++ .|+|+++.||||+|||++|++|+++.+...... ..
T Consensus 17 ~~~~~l~~~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~--~~ 93 (579)
T 3sqw_A 17 VTLDSLLEEGVLDKEIHKAI-TRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD--SQ 93 (579)
T ss_dssp CCHHHHHHTTSSCHHHHHHH-HTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--ST
T ss_pred cCHHHHhhcCCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc--cc
Confidence 3455443 999999999 78999999999999999999 788999999999999999999999998774321 23
Q ss_pred CCeeEEEEeCChHHHHHHHHHHHHHHhh---cCCceeEEeeCCCChHHHHHHHh-cCCcEEEeCcHHHHHHHhcCCcccc
Q 043110 109 SGTFALVLVPTSELCLLVYEILQKLLHR---FRWIVPGYVMGGGNRSKEKARLR-KGISILVATPGHLLDHLKHTSSFLH 184 (316)
Q Consensus 109 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~-~~~~IlV~Tp~~l~~~l~~~~~~~~ 184 (316)
.++++|||+||++|+.|+++.++.++.. .....+....||.....+...+. .+++|+|+||++|.+++.......+
T Consensus 94 ~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~ 173 (579)
T 3sqw_A 94 YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFF 173 (579)
T ss_dssp TSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcccccc
Confidence 4678999999999999999999998753 23345667788888777776664 4789999999999999876444566
Q ss_pred CceeEEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCC
Q 043110 185 TNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDE 264 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 264 (316)
..+++||+||||++++++|...+..|+..++... ....+.+|+++||||+++.+..++..++.+|..+.+..
T Consensus 174 ~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~--------~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~ 245 (579)
T 3sqw_A 174 RFVDYKVLDEADRLLEIGFRDDLETISGILNEKN--------SKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDT 245 (579)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHC--------SSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEES
T ss_pred ccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhh--------cccccCceEEEEeccCChHHHHHHHHHcCCCceEEEee
Confidence 7899999999999999999999999999886521 11223679999999999999999999999988776543
No 23
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=9.3e-34 Score=274.62 Aligned_cols=218 Identities=32% Similarity=0.460 Sum_probs=180.0
Q ss_pred CcccCC----CCHHHHHHHHHHcCCCCCcHHHHHHHHHHh--CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCC
Q 043110 36 CFSSLG----LDSTLCDQLRERLGFEAPTKVQAQAIPVIL--SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSS 109 (316)
Q Consensus 36 ~f~~~~----l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il--~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~ 109 (316)
+|+++. |++.+++.| .++||..|+|+|.++|+.++ .|+|++++||||+|||++|++|+++.+...... ...
T Consensus 69 ~~~~l~~~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~--~~~ 145 (563)
T 3i5x_A 69 TLDSLLEEGVLDKEIHKAI-TRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD--SQY 145 (563)
T ss_dssp CHHHHHHTTSSCHHHHHHH-HTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--STT
T ss_pred CHHHHhhcCCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc--ccC
Confidence 455553 999999999 77899999999999999999 678999999999999999999999998774432 234
Q ss_pred CeeEEEEeCChHHHHHHHHHHHHHHhhc---CCceeEEeeCCCChHHHHHHH-hcCCcEEEeCcHHHHHHHhcCCccccC
Q 043110 110 GTFALVLVPTSELCLLVYEILQKLLHRF---RWIVPGYVMGGGNRSKEKARL-RKGISILVATPGHLLDHLKHTSSFLHT 185 (316)
Q Consensus 110 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l-~~~~~IlV~Tp~~l~~~l~~~~~~~~~ 185 (316)
++++|||+||++|+.|+++.++.+.... ....+....||.....+...+ ..+++|+|+||++|.+++.+.....+.
T Consensus 146 ~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 225 (563)
T 3i5x_A 146 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFR 225 (563)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCT
T ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccc
Confidence 5689999999999999999999986532 234566777888877776665 447899999999999998764444567
Q ss_pred ceeEEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCC
Q 043110 186 NLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDE 264 (316)
Q Consensus 186 ~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 264 (316)
.++++|+||||++++++|.+.+..++..++... ....+.+|++++|||+++.+..++..++.+|..+.+..
T Consensus 226 ~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~--------~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~ 296 (563)
T 3i5x_A 226 FVDYKVLDEADRLLEIGFRDDLETISGILNEKN--------SKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDT 296 (563)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHC--------SSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEES
T ss_pred cceEEEEeCHHHHhccchHHHHHHHHHhhhhcc--------ccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEec
Confidence 899999999999999999999999999886421 11233679999999999999999999999987766543
No 24
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=3.1e-33 Score=258.37 Aligned_cols=210 Identities=26% Similarity=0.454 Sum_probs=180.5
Q ss_pred cCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeE
Q 043110 34 SCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 113 (316)
Q Consensus 34 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 113 (316)
..+|+++++++.+.+.| +.+||..|+|+|.++++.++.|+|+++.+|||+|||++|++|++..+... ..+.++
T Consensus 7 ~~~f~~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~------~~~~~~ 79 (391)
T 1xti_A 7 SSGFRDFLLKPELLRAI-VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV------TGQVSV 79 (391)
T ss_dssp --CGGGGCCCHHHHHHH-HHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC------TTCCCE
T ss_pred CCChhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc------CCCeeE
Confidence 46799999999999999 66899999999999999999999999999999999999999999887542 235579
Q ss_pred EEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhc-CCcEEEeCcHHHHHHHhcCCccccCceeEEEE
Q 043110 114 LVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRK-GISILVATPGHLLDHLKHTSSFLHTNLRWIIF 192 (316)
Q Consensus 114 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lVi 192 (316)
||++|+++|+.|+++.++++........+....|+.........+.. .++|+|+||+++..++.. ....+.+++++|+
T Consensus 80 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~vVi 158 (391)
T 1xti_A 80 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFIL 158 (391)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCSEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccccccCEEEE
Confidence 99999999999999999999876656777788888887776666654 479999999999998876 4455678999999
Q ss_pred ecchhhhcC-CcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCC
Q 043110 193 DEADRILEL-GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKK 266 (316)
Q Consensus 193 DEad~l~~~-~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~ 266 (316)
||||++.++ ++...+..++..++. ..|++++|||+++.+..+...++.+|..+.+....
T Consensus 159 DEaH~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (391)
T 1xti_A 159 DECDKMLEQLDMRRDVQEIFRMTPH---------------EKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDET 218 (391)
T ss_dssp CSHHHHTSSHHHHHHHHHHHHTSCS---------------SSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCC
T ss_pred eCHHHHhhccchHHHHHHHHhhCCC---------------CceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCcc
Confidence 999999884 788888888877665 78999999999999999999999999988876553
No 25
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2.8e-33 Score=258.84 Aligned_cols=212 Identities=31% Similarity=0.496 Sum_probs=179.4
Q ss_pred CCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEE
Q 043110 35 CCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 114 (316)
Q Consensus 35 ~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 114 (316)
.+|+++++++.+.+.| ..+||..|+|+|+++++.++.|+|+++.+|||+|||++|++|+++.+... ..+.++|
T Consensus 21 ~~f~~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~------~~~~~~l 93 (394)
T 1fuu_A 21 YKFDDMELDENLLRGV-FGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS------VKAPQAL 93 (394)
T ss_dssp CSSGGGCCCHHHHHHH-HHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT------CCSCCEE
T ss_pred CChhhcCCCHHHHHHH-HHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc------CCCCCEE
Confidence 5799999999999999 66899999999999999999999999999999999999999999887542 2356799
Q ss_pred EEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEec
Q 043110 115 VLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDE 194 (316)
Q Consensus 115 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDE 194 (316)
|++|+++|+.|+++.+..++...+ ..+....|+.........+. +++|+|+||+++.+.+.. ....+.+++++|+||
T Consensus 94 il~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~-~~~~~~~~~~vIiDE 170 (394)
T 1fuu_A 94 MLAPTRELALQIQKVVMALAFHMD-IKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQR-RRFRTDKIKMFILDE 170 (394)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSC-CCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEET
T ss_pred EEcCCHHHHHHHHHHHHHHhccCC-eeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHh-CCcchhhCcEEEEEC
Confidence 999999999999999999876543 55666777777766555544 579999999999998876 445567899999999
Q ss_pred chhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCCCCCCC
Q 043110 195 ADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDK 271 (316)
Q Consensus 195 ad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~~~~~~ 271 (316)
||++.++++...+..++..++. ..|++++|||+++.+..+...++.+|..+.+.........
T Consensus 171 ah~~~~~~~~~~~~~~~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (394)
T 1fuu_A 171 ADEMLSSGFKEQIYQIFTLLPP---------------TTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEG 232 (394)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCT---------------TCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-------
T ss_pred hHHhhCCCcHHHHHHHHHhCCC---------------CceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCC
Confidence 9999999999999999998876 7899999999999999999999999998887766544433
No 26
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=4.4e-33 Score=258.43 Aligned_cols=209 Identities=34% Similarity=0.490 Sum_probs=179.7
Q ss_pred ccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCee
Q 043110 33 ASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 112 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 112 (316)
...+|++++|++.+.+.| .++||..|+|+|+++++.+++|+++++.+|||+|||++|++|++..+... ..+.+
T Consensus 19 ~~~~f~~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~------~~~~~ 91 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGI-FEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK------LNKIQ 91 (400)
T ss_dssp --CCGGGGCCCHHHHHHH-HHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT------SCSCC
T ss_pred ccCChhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc------cCCcc
Confidence 456899999999999999 67899999999999999999999999999999999999999999887542 23557
Q ss_pred EEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEE
Q 043110 113 ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIF 192 (316)
Q Consensus 113 ~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lVi 192 (316)
+||++|+++|+.|+++.++.++...+ ..+....|+.....+...+..+++|+|+||+++.+++.. ....+.+++++|+
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~-~~~~~~~~~~vIi 169 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHCG-ISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR-KVADLSDCSLFIM 169 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTT-CCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcccC-ceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHh-CCcccccCCEEEE
Confidence 99999999999999999999876543 556667788887777777777899999999999998876 4455678999999
Q ss_pred ecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCC
Q 043110 193 DEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265 (316)
Q Consensus 193 DEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 265 (316)
||||++.+.+|...+..++..++. ..|++++|||++..+..+...++.+|..+.....
T Consensus 170 DEaH~~~~~~~~~~~~~i~~~~~~---------------~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~ 227 (400)
T 1s2m_A 170 DEADKMLSRDFKTIIEQILSFLPP---------------THQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE 227 (400)
T ss_dssp ESHHHHSSHHHHHHHHHHHTTSCS---------------SCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS
T ss_pred eCchHhhhhchHHHHHHHHHhCCc---------------CceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc
Confidence 999999988888888888877665 7899999999999999999999999988766543
No 27
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=5.5e-32 Score=249.90 Aligned_cols=209 Identities=24% Similarity=0.443 Sum_probs=174.4
Q ss_pred CCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCee
Q 043110 35 CCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSG--RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 112 (316)
Q Consensus 35 ~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 112 (316)
.+|++++|++.+.+.| .++||..|+|+|.++++.++.+ +++++++|||+|||++|++|++..+... ..+.+
T Consensus 5 ~~f~~~~l~~~l~~~l-~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~------~~~~~ 77 (395)
T 3pey_A 5 KSFDELGLAPELLKGI-YAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE------DASPQ 77 (395)
T ss_dssp CSSTTSCCCHHHHHHH-HHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT------CCSCC
T ss_pred cCHhhCCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC------CCCcc
Confidence 6899999999999999 6789999999999999999988 8999999999999999999999887542 23567
Q ss_pred EEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEE
Q 043110 113 ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIF 192 (316)
Q Consensus 113 ~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lVi 192 (316)
+||++|+++|+.|+++.++.++.... .......++...... ..+++|+|+||+++.+++.. ....+.+++++|+
T Consensus 78 ~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIi 151 (395)
T 3pey_A 78 AICLAPSRELARQTLEVVQEMGKFTK-ITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRR-KLMQLQKIKIFVL 151 (395)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSC-CCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHT-TCBCCTTCCEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccC-eeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHc-CCcccccCCEEEE
Confidence 99999999999999999999876544 344444444332211 23579999999999998876 4556778999999
Q ss_pred ecchhhhc-CCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCCCCCCC
Q 043110 193 DEADRILE-LGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDK 271 (316)
Q Consensus 193 DEad~l~~-~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~~~~~~ 271 (316)
||||++.+ .++...+..+...++. ..|++++|||+++.+..+...++.+|..+...........
T Consensus 152 DEah~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (395)
T 3pey_A 152 DEADNMLDQQGLGDQCIRVKRFLPK---------------DTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDA 216 (395)
T ss_dssp ETHHHHHHSTTHHHHHHHHHHTSCT---------------TCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTT
T ss_pred EChhhhcCccccHHHHHHHHHhCCC---------------CcEEEEEEecCCHHHHHHHHHhCCCCeEEEcccccccccc
Confidence 99999998 6888888888888776 7899999999999999999999999998877665544433
No 28
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.1e-31 Score=245.49 Aligned_cols=205 Identities=30% Similarity=0.524 Sum_probs=176.4
Q ss_pred cCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCC-CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCee
Q 043110 34 SCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSG-RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 112 (316)
Q Consensus 34 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 112 (316)
..+|+++++++.+.+.| +++||..|+|+|+++++.+++| +++++.+|||+|||++|++|++..+.. ..+.+
T Consensus 5 ~~~f~~~~l~~~~~~~l-~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~-------~~~~~ 76 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAI-RNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE-------NNGIE 76 (367)
T ss_dssp CCCGGGSSCCHHHHHHH-HHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS-------SSSCC
T ss_pred cCchhhcCCCHHHHHHH-HHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc-------cCCCc
Confidence 45799999999999999 6679999999999999999988 699999999999999999999987754 23567
Q ss_pred EEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEE
Q 043110 113 ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIF 192 (316)
Q Consensus 113 ~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lVi 192 (316)
+||++|+++|+.|+++.+..+.... ........|+.....+...+. +++|+|+||+++.+.+.. ....+.+++++|+
T Consensus 77 ~lil~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIi 153 (367)
T 1hv8_A 77 AIILTPTRELAIQVADEIESLKGNK-NLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINR-GTLNLKNVKYFIL 153 (367)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHCSS-CCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHT-TCSCTTSCCEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHc-CCcccccCCEEEE
Confidence 9999999999999999999987653 345566777777766665554 689999999999998876 4455678999999
Q ss_pred ecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCC
Q 043110 193 DEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDE 264 (316)
Q Consensus 193 DEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 264 (316)
||||++.++++...+..++..++. ..+++++|||++..+..+...++.++..+....
T Consensus 154 DEah~~~~~~~~~~~~~~~~~~~~---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 210 (367)
T 1hv8_A 154 DEADEMLNMGFIKDVEKILNACNK---------------DKRILLFSATMPREILNLAKKYMGDYSFIKAKI 210 (367)
T ss_dssp ETHHHHHTTTTHHHHHHHHHTSCS---------------SCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS
T ss_pred eCchHhhhhchHHHHHHHHHhCCC---------------CceEEEEeeccCHHHHHHHHHHcCCCeEEEecC
Confidence 999999999999999999887765 789999999999999999999999888776544
No 29
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.98 E-value=1.4e-30 Score=235.55 Aligned_cols=190 Identities=32% Similarity=0.484 Sum_probs=165.1
Q ss_pred CCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChH
Q 043110 42 LDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSE 121 (316)
Q Consensus 42 l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~ 121 (316)
|++++.+.| +++||..|+|+|+++++.+++|+++++.+|||+|||++|++|+++. +.++||++|+++
T Consensus 1 l~~~i~~~l-~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------------~~~~liv~P~~~ 67 (337)
T 2z0m_A 1 MNEKIEQAI-REMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------------GMKSLVVTPTRE 67 (337)
T ss_dssp CCHHHHHHH-HHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------------TCCEEEECSSHH
T ss_pred CCHHHHHHH-HHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------------cCCEEEEeCCHH
Confidence 578999999 7799999999999999999999999999999999999999998763 234999999999
Q ss_pred HHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcC
Q 043110 122 LCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILEL 201 (316)
Q Consensus 122 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~ 201 (316)
|+.|+++.+++++...+ .......|+.....+...+. .++|+|+||+++.+++.. ....+.+++++|+||||++.++
T Consensus 68 L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~ 144 (337)
T 2z0m_A 68 LTRQVASHIRDIGRYMD-TKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSK-GVIDLSSFEIVIIDEADLMFEM 144 (337)
T ss_dssp HHHHHHHHHHHHTTTSC-CCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHT-TSCCGGGCSEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHhhhcC-CcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHc-CCcchhhCcEEEEEChHHhhcc
Confidence 99999999999876544 45566777777766665554 489999999999998876 4455678999999999999999
Q ss_pred CcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEc
Q 043110 202 GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGL 262 (316)
Q Consensus 202 ~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~ 262 (316)
++...+..++..++. ..+++++|||+++.+......++.++..+..
T Consensus 145 ~~~~~~~~~~~~~~~---------------~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~ 190 (337)
T 2z0m_A 145 GFIDDIKIILAQTSN---------------RKITGLFSATIPEEIRKVVKDFITNYEEIEA 190 (337)
T ss_dssp TCHHHHHHHHHHCTT---------------CSEEEEEESCCCHHHHHHHHHHSCSCEEEEC
T ss_pred ccHHHHHHHHhhCCc---------------ccEEEEEeCcCCHHHHHHHHHhcCCceeeec
Confidence 999999999988876 7899999999999999999999998887753
No 30
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.96 E-value=1.1e-29 Score=237.12 Aligned_cols=185 Identities=18% Similarity=0.186 Sum_probs=144.9
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHH
Q 043110 44 STLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELC 123 (316)
Q Consensus 44 ~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~ 123 (316)
+++.+.+.+.+|| +|+|+|.++++.+++|+|+++.+|||+|||++|++|++..+. .+.++||++||++|+
T Consensus 8 ~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~---------~~~~~lil~Pt~~L~ 77 (414)
T 3oiy_A 8 EDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---------KGKKSALVFPTVTLV 77 (414)
T ss_dssp HHHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT---------TTCCEEEEESSHHHH
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc---------CCCEEEEEECCHHHH
Confidence 3566777677888 599999999999999999999999999999999999888762 256799999999999
Q ss_pred HHHHHHHHHHHhhcCCceeEEeeCCCCh---HHHHHHHhcC-CcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhh
Q 043110 124 LLVYEILQKLLHRFRWIVPGYVMGGGNR---SKEKARLRKG-ISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRIL 199 (316)
Q Consensus 124 ~Q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~-~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~ 199 (316)
.|+++.++.++. ....+..+.|+... ..+...+..+ ++|+|+||+++.+++.. ..+.+++++|+||||++.
T Consensus 78 ~q~~~~~~~~~~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~~~iViDEaH~~~ 152 (414)
T 3oiy_A 78 KQTLERLQKLAD--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVL 152 (414)
T ss_dssp HHHHHHHHHHCC--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH---HTTCCCSEEEESCHHHHH
T ss_pred HHHHHHHHHHcc--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH---hccccccEEEEeChHhhh
Confidence 999999999875 34667778888877 5555666665 99999999999887764 445689999999998665
Q ss_pred ----------c-CCcHHH-HHHHHHHhccCcccccCCCCccccccceEEEEeee-cchhHH
Q 043110 200 ----------E-LGFGKE-IEEILDILGSRNIASIGEGNEVSNVKRQNLLLSAT-LNEKVN 247 (316)
Q Consensus 200 ----------~-~~~~~~-i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT-~~~~v~ 247 (316)
+ .+|... +..++..++... ........+.+|++++||| .|..+.
T Consensus 153 ~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~~~~i~~SAT~~~~~~~ 209 (414)
T 3oiy_A 153 KASRNIDTLLMMVGIPEEIIRKAFSTIKQGK----IYERPKNLKPGILVVSSATAKPRGIR 209 (414)
T ss_dssp HCHHHHHHHHHHTTCCHHHHHHHHHHHHHTC----CCCCCTTCCCCEEEESSCCSSCCSST
T ss_pred hccchhhhHHhhcCCcHHHHHHHHHhcccch----hhhhcccCCCceEEEEecCCCcchhH
Confidence 3 678888 888988886100 0000001137899999999 666554
No 31
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.96 E-value=3.5e-29 Score=239.65 Aligned_cols=210 Identities=20% Similarity=0.356 Sum_probs=150.2
Q ss_pred CcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCC--CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeE
Q 043110 36 CFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSG--RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 113 (316)
Q Consensus 36 ~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g--~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 113 (316)
.|...++++.+.+.+ ...|+..|+++|.++++.+++| +++++.+|||+|||++|++|++..+... ..+.++
T Consensus 120 ~~~~~~l~~~~~~~l-~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~------~~~~~v 192 (508)
T 3fho_A 120 XXXXXXXXXXXXXXX-XXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS------VPKPQA 192 (508)
T ss_dssp --------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT------CCSCCE
T ss_pred ccccccccccccccc-ccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC------CCCceE
Confidence 456678899999999 5679999999999999999998 8999999999999999999999988552 235579
Q ss_pred EEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEe
Q 043110 114 LVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFD 193 (316)
Q Consensus 114 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViD 193 (316)
||++|+++|+.|+++.++.++.... .......++... .....+++|+|+||+++.+.+.. ....+.+++++|+|
T Consensus 193 Lvl~P~~~L~~Q~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~Ivv~T~~~l~~~l~~-~~~~~~~~~lIIiD 266 (508)
T 3fho_A 193 ICLAPSRELARQIMDVVTEMGKYTE-VKTAFGIKDSVP----KGAKIDAQIVIGTPGTVMDLMKR-RQLDARDIKVFVLD 266 (508)
T ss_dssp EEECSCHHHHHHHHHHHHHHSTTSS-CCEEC--------------CCCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEC
T ss_pred EEEECcHHHHHHHHHHHHHhCCccC-eeEEEEeCCccc----ccccCCCCEEEECHHHHHHHHHc-CCccccCCCEEEEe
Confidence 9999999999999999999876543 222222222221 12234689999999999998876 44556789999999
Q ss_pred cchhhhc-CCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCCCCCCCCC
Q 043110 194 EADRILE-LGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEKKFPEDKS 272 (316)
Q Consensus 194 Ead~l~~-~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~~~~~~~~ 272 (316)
|||++.+ .++...+..+...++. ..|++++|||+++.+..+...++.+|..+.+..........
T Consensus 267 EaH~~~~~~~~~~~~~~i~~~~~~---------------~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 331 (508)
T 3fho_A 267 EADNMLDQQGLGDQSMRIKHLLPR---------------NTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGI 331 (508)
T ss_dssp CHHHHTTC--CHHHHHHHHHHSCT---------------TCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CC
T ss_pred chhhhcccCCcHHHHHHHHHhCCc---------------CCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccc
Confidence 9999988 5899999999998876 88999999999999999999999999988777665444333
Q ss_pred C
Q 043110 273 N 273 (316)
Q Consensus 273 ~ 273 (316)
.
T Consensus 332 ~ 332 (508)
T 3fho_A 332 K 332 (508)
T ss_dssp C
T ss_pred e
Confidence 3
No 32
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.96 E-value=1.8e-28 Score=237.86 Aligned_cols=198 Identities=20% Similarity=0.248 Sum_probs=153.6
Q ss_pred cccccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCC
Q 043110 30 EIFASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSS 109 (316)
Q Consensus 30 ~~~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~ 109 (316)
.....+.++++++++.+.+.|.+.|||..|+|+|.++|+.+++|+|+++.+|||+|||++|++|++..
T Consensus 16 ~~~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------------ 83 (591)
T 2v1x_A 16 SSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------------ 83 (591)
T ss_dssp CCGGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS------------
T ss_pred cchhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc------------
Confidence 34455667789999999999976799999999999999999999999999999999999999999752
Q ss_pred CeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHH---H---hcCCcEEEeCcHHHH------HHHh
Q 043110 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKAR---L---RKGISILVATPGHLL------DHLK 177 (316)
Q Consensus 110 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l---~~~~~IlV~Tp~~l~------~~l~ 177 (316)
..++|||+|+++|+.|+.+.+..++ +....+.++......... + ...++|+|+||++|. +.+.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~g-----i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~ 158 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLG-----ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLE 158 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHT-----CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcC-----CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHH
Confidence 2369999999999999999998862 445566666665543322 2 346899999999874 2232
Q ss_pred cCCccccCceeEEEEecchhhhcCC--cHHHHHH--HHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHh
Q 043110 178 HTSSFLHTNLRWIIFDEADRILELG--FGKEIEE--ILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKIS 253 (316)
Q Consensus 178 ~~~~~~~~~l~~lViDEad~l~~~~--~~~~i~~--i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~ 253 (316)
. ...+..++++||||||++.++| |.+.+.. ++..... ..|++++|||+++.+...+..+
T Consensus 159 ~--~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~---------------~~~ii~lSAT~~~~v~~~i~~~ 221 (591)
T 2v1x_A 159 K--AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFP---------------NASLIGLTATATNHVLTDAQKI 221 (591)
T ss_dssp H--HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCT---------------TSEEEEEESSCCHHHHHHHHHH
T ss_pred h--hhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCC---------------CCcEEEEecCCCHHHHHHHHHH
Confidence 2 2345689999999999999987 7776654 2322222 6899999999999988877766
Q ss_pred cC--CCEEEE
Q 043110 254 LE--TPVLIG 261 (316)
Q Consensus 254 l~--~p~~i~ 261 (316)
+. ++..+.
T Consensus 222 l~~~~~~~~~ 231 (591)
T 2v1x_A 222 LCIEKCFTFT 231 (591)
T ss_dssp TTCCSCEEEE
T ss_pred hCCCCcEEEe
Confidence 65 444443
No 33
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.95 E-value=1e-27 Score=238.55 Aligned_cols=186 Identities=24% Similarity=0.294 Sum_probs=154.5
Q ss_pred CcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEE
Q 043110 36 CFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPV-ILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 114 (316)
Q Consensus 36 ~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~-il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 114 (316)
+|++++|++.+.+.+ +.+||..|+++|.++++. +.+|+++++++|||||||++|.+|+++.+... +.+++
T Consensus 2 ~f~~l~l~~~~~~~l-~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--------~~~~l 72 (720)
T 2zj8_A 2 RVDELRVDERIKSTL-KERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--------GGKAV 72 (720)
T ss_dssp BGGGCCSCHHHHHHH-HHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--------CSEEE
T ss_pred cHhhcCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--------CCEEE
Confidence 599999999999999 668999999999999998 88999999999999999999999999888742 45799
Q ss_pred EEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEec
Q 043110 115 VLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDE 194 (316)
Q Consensus 115 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDE 194 (316)
|++|+++|+.|+++.++.+.. .+ ..+....|+...... ....++|+|+||+++..++.+ ....+++++++|+||
T Consensus 73 ~i~P~raLa~q~~~~~~~l~~-~g-~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vIiDE 146 (720)
T 2zj8_A 73 YIVPLKALAEEKFQEFQDWEK-IG-LRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRH-GSSWIKDVKILVADE 146 (720)
T ss_dssp EECSSGGGHHHHHHHTGGGGG-GT-CCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHH-TCTTGGGEEEEEEET
T ss_pred EEcCcHHHHHHHHHHHHHHHh-cC-CEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHc-ChhhhhcCCEEEEEC
Confidence 999999999999999865543 22 455566665443221 124689999999999998876 334467899999999
Q ss_pred chhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHH
Q 043110 195 ADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKI 252 (316)
Q Consensus 195 ad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~ 252 (316)
||++.+++++..++.++..++. ..|++++|||+++ ...+...
T Consensus 147 ~H~l~~~~r~~~~~~ll~~l~~---------------~~~ii~lSATl~n-~~~~~~~ 188 (720)
T 2zj8_A 147 IHLIGSRDRGATLEVILAHMLG---------------KAQIIGLSATIGN-PEELAEW 188 (720)
T ss_dssp GGGGGCTTTHHHHHHHHHHHBT---------------TBEEEEEECCCSC-HHHHHHH
T ss_pred CcccCCCcccHHHHHHHHHhhc---------------CCeEEEEcCCcCC-HHHHHHH
Confidence 9999998999999999999975 7899999999985 4555543
No 34
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.6e-28 Score=247.10 Aligned_cols=194 Identities=23% Similarity=0.183 Sum_probs=160.0
Q ss_pred CCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEE
Q 043110 35 CCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 114 (316)
Q Consensus 35 ~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 114 (316)
..|+.+++++.+...+... ++..|+++|.++++.+..|+|++++||||||||++|.+|++..+.. +.++|
T Consensus 162 ~~~~~~~l~~~~~~~~~~~-~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~---------g~rvl 231 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEART-YPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---------KQRVI 231 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSC-CSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT---------TCEEE
T ss_pred CCcccCCCChhhhHHHHHh-CCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc---------CCeEE
Confidence 4677788888777777344 4446999999999999999999999999999999999999998854 56799
Q ss_pred EEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEec
Q 043110 115 VLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDE 194 (316)
Q Consensus 115 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDE 194 (316)
|++||++|+.|+++.+..++. .++++.|+... ..+++|+|+||++|.+++.. ....+.++++|||||
T Consensus 232 vl~PtraLa~Q~~~~l~~~~~-----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~-~~~~l~~l~lVVIDE 298 (1108)
T 3l9o_A 232 YTSPIKALSNQKYRELLAEFG-----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYR-GSEVMREVAWVIFDE 298 (1108)
T ss_dssp EEESSHHHHHHHHHHHHHHTS-----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHH-CSSHHHHEEEEEEET
T ss_pred EEcCcHHHHHHHHHHHHHHhC-----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHc-CccccccCCEEEEhh
Confidence 999999999999999988764 34455665542 34589999999999999987 344567899999999
Q ss_pred chhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchh--HHHHHHHhcCCCEEEEcCCCC
Q 043110 195 ADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEK--VNHLTKISLETPVLIGLDEKK 266 (316)
Q Consensus 195 ad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~--v~~~~~~~l~~p~~i~~~~~~ 266 (316)
||++.+++|+..+..++..++. ..|++++|||+|.. +..+......+|+.+......
T Consensus 299 aH~l~d~~rg~~~e~ii~~l~~---------------~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r 357 (1108)
T 3l9o_A 299 VHYMRDKERGVVWEETIILLPD---------------KVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR 357 (1108)
T ss_dssp GGGTTSHHHHHHHHHHHHHSCT---------------TSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC
T ss_pred hhhccccchHHHHHHHHHhcCC---------------CceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC
Confidence 9999999999999999999887 89999999999875 345666677778777655443
No 35
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.95 E-value=2.6e-27 Score=235.54 Aligned_cols=188 Identities=21% Similarity=0.256 Sum_probs=153.9
Q ss_pred cCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCee
Q 043110 34 SCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPV-ILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 112 (316)
Q Consensus 34 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~-il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 112 (316)
..+|++++|++.+.+.+ +++||..|+++|.++++. +.++++++++||||||||++|.+|+++.+... +.+
T Consensus 7 ~~~~~~l~l~~~~~~~l-~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--------~~~ 77 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEII-KKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--------GGK 77 (715)
T ss_dssp CCBGGGSSSCHHHHHHH-HTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--------CSE
T ss_pred cCcHHHcCCCHHHHHHH-HhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--------CCe
Confidence 35799999999999999 678999999999999999 78899999999999999999999999887641 457
Q ss_pred EEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEE
Q 043110 113 ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIF 192 (316)
Q Consensus 113 ~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lVi 192 (316)
++|++|+++|+.|+++.++.+.. .+ ..+....|+...... . ...++|+|+||+++..++.+ ....+++++++|+
T Consensus 78 il~i~P~r~La~q~~~~~~~~~~-~g-~~v~~~~G~~~~~~~--~-~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vIi 151 (715)
T 2va8_A 78 AIYVTPLRALTNEKYLTFKDWEL-IG-FKVAMTSGDYDTDDA--W-LKNYDIIITTYEKLDSLWRH-RPEWLNEVNYFVL 151 (715)
T ss_dssp EEEECSCHHHHHHHHHHHGGGGG-GT-CCEEECCSCSSSCCG--G-GGGCSEEEECHHHHHHHHHH-CCGGGGGEEEEEE
T ss_pred EEEEeCcHHHHHHHHHHHHHhhc-CC-CEEEEEeCCCCCchh--h-cCCCCEEEEcHHHHHHHHhC-ChhHhhccCEEEE
Confidence 99999999999999998864432 22 455555565443222 1 23689999999999998887 3344679999999
Q ss_pred ecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHh
Q 043110 193 DEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKIS 253 (316)
Q Consensus 193 DEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~ 253 (316)
||||.+.+.+++..++.++..++ ..|++++|||+++ ...+...+
T Consensus 152 DE~H~l~~~~~~~~l~~i~~~~~----------------~~~ii~lSATl~n-~~~~~~~l 195 (715)
T 2va8_A 152 DELHYLNDPERGPVVESVTIRAK----------------RRNLLALSATISN-YKQIAKWL 195 (715)
T ss_dssp CSGGGGGCTTTHHHHHHHHHHHH----------------TSEEEEEESCCTT-HHHHHHHH
T ss_pred echhhcCCcccchHHHHHHHhcc----------------cCcEEEEcCCCCC-HHHHHHHh
Confidence 99999998889999999998886 6799999999985 45555543
No 36
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.95 E-value=1.4e-27 Score=228.97 Aligned_cols=196 Identities=23% Similarity=0.270 Sum_probs=147.8
Q ss_pred CCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEE
Q 043110 35 CCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFAL 114 (316)
Q Consensus 35 ~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~l 114 (316)
.+|++++|++.+.+.|.+.+||..|+|+|.++|+.+++|+|+++.+|||+|||++|++|++.. ...+|
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------------~g~~l 69 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------------NGLTV 69 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------------SSEEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------------CCCEE
Confidence 479999999999999966699999999999999999999999999999999999999998742 23499
Q ss_pred EEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHH---HH-HhcCCcEEEeCcHHHHHHHhcCCccccCceeEE
Q 043110 115 VLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEK---AR-LRKGISILVATPGHLLDHLKHTSSFLHTNLRWI 190 (316)
Q Consensus 115 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~l 190 (316)
|++|+++|+.|+.+.++.++ .....+.++....... .. ....++|+|+||++|...... ..+...+++++
T Consensus 70 vi~P~~aL~~q~~~~l~~~g-----i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~-~~l~~~~~~~v 143 (523)
T 1oyw_A 70 VVSPLISLMKDQVDQLQANG-----VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL-EHLAHWNPVLL 143 (523)
T ss_dssp EECSCHHHHHHHHHHHHHTT-----CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH-HHHTTSCEEEE
T ss_pred EECChHHHHHHHHHHHHHcC-----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHH-HHHhhCCCCEE
Confidence 99999999999999888742 3445555665544332 22 234589999999998532111 11223689999
Q ss_pred EEecchhhhcCC--cHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHH-H-HhcCCCEEEE
Q 043110 191 IFDEADRILELG--FGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLT-K-ISLETPVLIG 261 (316)
Q Consensus 191 ViDEad~l~~~~--~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~-~-~~l~~p~~i~ 261 (316)
||||||++.++| |.+.+..+...... .+..+++++|||+++.+...+ + ..+.+|..+.
T Consensus 144 ViDEaH~i~~~g~~fr~~~~~l~~l~~~-------------~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~ 205 (523)
T 1oyw_A 144 AVDEAHCISQWGHDFRPEYAALGQLRQR-------------FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQI 205 (523)
T ss_dssp EESSGGGGCTTSSCCCHHHHGGGGHHHH-------------CTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEE
T ss_pred EEeCccccCcCCCccHHHHHHHHHHHHh-------------CCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEe
Confidence 999999999886 77766654332221 116799999999998876533 3 3456776554
No 37
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.95 E-value=5.4e-27 Score=241.14 Aligned_cols=185 Identities=18% Similarity=0.177 Sum_probs=145.7
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHH
Q 043110 44 STLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELC 123 (316)
Q Consensus 44 ~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~ 123 (316)
+.+.+.+...+||. |+|+|.+++|.++.|+|++++||||||||++|++|++..+. .+.++||++||++||
T Consensus 65 ~~~~~~~~~~~gf~-pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~---------~~~~~Lil~PtreLa 134 (1104)
T 4ddu_A 65 EDFRSFFKKKFGKD-LTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---------KGKKSALVFPTVTLV 134 (1104)
T ss_dssp HHHHHHHHHHSSSC-CCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT---------TTCCEEEEESSHHHH
T ss_pred HHHHHHHHHhcCCC-CCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh---------cCCeEEEEechHHHH
Confidence 34455665678995 99999999999999999999999999999999888887763 256799999999999
Q ss_pred HHHHHHHHHHHhhcCCceeEEeeCCCCh---HHHHHHHhcC-CcEEEeCcHHHHHHHhcCCccccCceeEEEEecchh--
Q 043110 124 LLVYEILQKLLHRFRWIVPGYVMGGGNR---SKEKARLRKG-ISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADR-- 197 (316)
Q Consensus 124 ~Q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~-~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~-- 197 (316)
.|+++.++.++ ...+.+..++||.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++||+||||+
T Consensus 135 ~Q~~~~l~~l~--~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lViDEaH~l~ 209 (1104)
T 4ddu_A 135 KQTLERLQKLA--DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVL 209 (1104)
T ss_dssp HHHHHHHHTTS--CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEESCHHHHT
T ss_pred HHHHHHHHHhh--CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEEeCCCccc
Confidence 99999999966 234677788888877 6667777776 99999999999888763 4557899999999965
Q ss_pred --------hhc-CCcHHH-HHHHHHHhccCcccccCCCCccccccceEEEEeee-cchhHH
Q 043110 198 --------ILE-LGFGKE-IEEILDILGSRNIASIGEGNEVSNVKRQNLLLSAT-LNEKVN 247 (316)
Q Consensus 198 --------l~~-~~~~~~-i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT-~~~~v~ 247 (316)
+++ +||... +..+++.++.. ...........+|+++|||| .|..+.
T Consensus 210 ~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~----~~~~~~~~~~~~q~ll~SAT~~p~~~~ 266 (1104)
T 4ddu_A 210 KASRNIDTLLMMVGIPEEIIRKAFSTIKQG----KIYERPKNLKPGILVVSSATAKPRGIR 266 (1104)
T ss_dssp TSSHHHHHHHHTSSCCHHHHHHHHHHHHHT----SCCCCCSSCCCCEEEEECBSSCCCSST
T ss_pred cccccchhhhHhcCCCHHHHHHHHHhcccc----hhhhhhccCCCceEEEEcCCCCcHHHH
Confidence 455 888888 89999988710 00000011137899999999 666655
No 38
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.94 E-value=1.1e-27 Score=237.84 Aligned_cols=188 Identities=21% Similarity=0.227 Sum_probs=149.6
Q ss_pred CcccCC--CCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeE
Q 043110 36 CFSSLG--LDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFA 113 (316)
Q Consensus 36 ~f~~~~--l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~ 113 (316)
+|++++ |++.+.+.+ +++||.+|+|+|.++++.+.+|+++++++|||||||++|.+|+++.+.. +.++
T Consensus 2 ~f~~l~~~l~~~~~~~l-~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---------~~~~ 71 (702)
T 2p6r_A 2 KVEELAESISSYAVGIL-KEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---------GGKS 71 (702)
T ss_dssp CSHHHHHHHHHHHHHHH-HCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---------TCCE
T ss_pred chhhhhhccCHHHHHHH-HhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---------CCcE
Confidence 588888 999999999 6789999999999999999999999999999999999999999988764 3469
Q ss_pred EEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEe
Q 043110 114 LVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFD 193 (316)
Q Consensus 114 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViD 193 (316)
+|++|+++|+.|+++.++.+.. . ...+....|+...... ....++|+|+||+++..++.+. ...+++++++|+|
T Consensus 72 l~i~P~r~La~q~~~~~~~~~~-~-g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~-~~~l~~~~~vIiD 145 (702)
T 2p6r_A 72 LYVVPLRALAGEKYESFKKWEK-I-GLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNR-ASWIKAVSCLVVD 145 (702)
T ss_dssp EEEESSHHHHHHHHHHHTTTTT-T-TCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTT-CSGGGGCCEEEET
T ss_pred EEEeCcHHHHHHHHHHHHHHHh-c-CCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcC-hhHHhhcCEEEEe
Confidence 9999999999999998864432 2 2455555555433221 1236899999999999988873 3446789999999
Q ss_pred cchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHH
Q 043110 194 EADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKI 252 (316)
Q Consensus 194 Ead~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~ 252 (316)
|||.+.+++++..++.++..+... .+..|++++|||+++ ...++..
T Consensus 146 E~H~l~~~~r~~~~~~ll~~l~~~------------~~~~~ii~lSATl~n-~~~~~~~ 191 (702)
T 2p6r_A 146 EIHLLDSEKRGATLEILVTKMRRM------------NKALRVIGLSATAPN-VTEIAEW 191 (702)
T ss_dssp TGGGGGCTTTHHHHHHHHHHHHHH------------CTTCEEEEEECCCTT-HHHHHHH
T ss_pred eeeecCCCCcccHHHHHHHHHHhc------------CcCceEEEECCCcCC-HHHHHHH
Confidence 999999988999999998887521 127899999999985 5556553
No 39
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.94 E-value=3.3e-27 Score=242.46 Aligned_cols=196 Identities=21% Similarity=0.274 Sum_probs=151.5
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHH
Q 043110 46 LCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLL 125 (316)
Q Consensus 46 l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q 125 (316)
+.+.+.+.+||. | ++|.++||.++.|+|++++||||||||+ |.+|++..+.. .++++||++||++||.|
T Consensus 46 ~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--------~~~~~lil~PtreLa~Q 114 (1054)
T 1gku_B 46 FVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--------KGKRCYVIFPTSLLVIQ 114 (1054)
T ss_dssp HHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--------TSCCEEEEESCHHHHHH
T ss_pred HHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--------cCCeEEEEeccHHHHHH
Confidence 446676779999 9 9999999999999999999999999998 88999888764 25679999999999999
Q ss_pred HHHHHHHHHhhcCC---ceeEEeeCCCChHHH---HHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhh
Q 043110 126 VYEILQKLLHRFRW---IVPGYVMGGGNRSKE---KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRIL 199 (316)
Q Consensus 126 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~ 199 (316)
+++.++.++...+. ..+..++|+.....+ ...+.. ++|+|+||++|.+++.+ +.+++++|+||||+++
T Consensus 115 ~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-----L~~l~~lViDEah~~l 188 (1054)
T 1gku_B 115 AAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-----LGHFDFIFVDDVDAIL 188 (1054)
T ss_dssp HHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-----SCCCSEEEESCHHHHH
T ss_pred HHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-----hccCCEEEEeChhhhh
Confidence 99999999876542 156777788776553 344445 89999999999997764 5689999999999999
Q ss_pred cCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCC
Q 043110 200 ELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265 (316)
Q Consensus 200 ~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 265 (316)
+ ++..++.++..++.... .........+|++++|||++.. ..+...++.+|..+.+...
T Consensus 189 ~--~~~~~~~i~~~lgf~~~----~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~ 247 (1054)
T 1gku_B 189 K--ASKNVDKLLHLLGFHYD----LKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSS 247 (1054)
T ss_dssp T--STHHHHHHHHHTTEEEE----TTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCC
T ss_pred h--ccccHHHHHHHhCcchh----hhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCc
Confidence 8 67889999988753100 0012223478999999999987 6455555555554444433
No 40
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.94 E-value=8.9e-26 Score=217.64 Aligned_cols=173 Identities=16% Similarity=0.165 Sum_probs=129.3
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHH
Q 043110 55 GFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL 134 (316)
Q Consensus 55 g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 134 (316)
+.-+|+|+|.++++.++.|+|+++.+|||+|||++|++|+++.+..... ..+.++||++||++|+.|+++.++.++
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~----~~~~~~lil~P~~~L~~q~~~~~~~~~ 79 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA----GRKAKVVFLATKVPVYEQQKNVFKHHF 79 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS----SCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc----cCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 4457999999999999999999999999999999999999998876321 225679999999999999999999998
Q ss_pred hhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHH-HHHHHH
Q 043110 135 HRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEI-EEILDI 213 (316)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i-~~i~~~ 213 (316)
...+ ..+..+.|+.........+..+++|+|+||++|.+++.......+.+++++|+||||++.++++...+ ...+..
T Consensus 80 ~~~~-~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~ 158 (556)
T 4a2p_A 80 ERQG-YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 158 (556)
T ss_dssp GGGT-CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHH
T ss_pred cccC-ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHh
Confidence 7653 55666777776666666666778999999999999998744336788999999999999987643333 122221
Q ss_pred hccCcccccCCCCccccccceEEEEeeecc
Q 043110 214 LGSRNIASIGEGNEVSNVKRQNLLLSATLN 243 (316)
Q Consensus 214 l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~ 243 (316)
... ...+..|++++|||++
T Consensus 159 ~~~-----------~~~~~~~~l~lSAT~~ 177 (556)
T 4a2p_A 159 KFN-----------SASQLPQILGLTASVG 177 (556)
T ss_dssp HHC-----------C---CCEEEEEESCCC
T ss_pred hhc-----------ccCCCCeEEEEeCCcc
Confidence 110 0123689999999995
No 41
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.94 E-value=5.8e-26 Score=222.65 Aligned_cols=172 Identities=19% Similarity=0.235 Sum_probs=135.8
Q ss_pred HcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHH
Q 043110 53 RLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQK 132 (316)
Q Consensus 53 ~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 132 (316)
.+|| +|+|+|..++|.++.|+ +++++||+|||++|.+|++..... |..++||+||++||.|+++++..
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~---------g~~vlVltptreLA~qd~e~~~~ 146 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT---------GKGVHVVTVNEYLASRDAEQMGK 146 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT---------SSCEEEEESSHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHHHHHHHH
Confidence 5799 89999999999999999 999999999999999999854432 34599999999999999999999
Q ss_pred HHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHH-HHHHhcC-----CccccCceeEEEEecchhhh-cCC---
Q 043110 133 LLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHL-LDHLKHT-----SSFLHTNLRWIIFDEADRIL-ELG--- 202 (316)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~~-----~~~~~~~l~~lViDEad~l~-~~~--- 202 (316)
+...++ +.+.+++||.+.... ....+++|+||||++| ++++... ....++.+.++|+||||+|+ |.+
T Consensus 147 l~~~lg-l~v~~i~gg~~~~~r--~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tp 223 (844)
T 1tf5_A 147 IFEFLG-LTVGLNLNSMSKDEK--REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTP 223 (844)
T ss_dssp HHHHTT-CCEEECCTTSCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCE
T ss_pred HHhhcC-CeEEEEeCCCCHHHH--HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccc
Confidence 998765 677788888775433 3334689999999999 6766542 23456789999999999998 764
Q ss_pred ------------cHHHHHHHHHHhccCcccccCCCCccccccceEE-----------------EEeeecchh
Q 043110 203 ------------FGKEIEEILDILGSRNIASIGEGNEVSNVKRQNL-----------------LLSATLNEK 245 (316)
Q Consensus 203 ------------~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i-----------------~~SAT~~~~ 245 (316)
|...+..|+..++.. ..-......+|++ +||||++.-
T Consensus 224 lIisg~~~~~~~~~~~i~~iv~~l~~~------~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~ 289 (844)
T 1tf5_A 224 LIISGQAAKSTKLYVQANAFVRTLKAE------KDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVAL 289 (844)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTCCSS------SSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHH
T ss_pred hhhcCCcccchhHHHHHHHHHHhCccc------ccceeccccceEEecHHHHHHHHHHhCccccCCCccchh
Confidence 667888888887631 0011122367777 899998753
No 42
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.93 E-value=2.1e-25 Score=221.06 Aligned_cols=180 Identities=17% Similarity=0.184 Sum_probs=134.2
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHH
Q 043110 48 DQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVY 127 (316)
Q Consensus 48 ~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~ 127 (316)
..+ +.+||..|+++|.++++.++.|+|+++++|||+|||++|++|+++.+..... ..+.++||++||++|+.|+.
T Consensus 4 ~~l-~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~----~~~~~~lvl~Pt~~L~~Q~~ 78 (696)
T 2ykg_A 4 SDT-NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ----GQKGKVVFFANQIPVYEQNK 78 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT----TCCCCEEEECSSHHHHHHHH
T ss_pred Ccc-cccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc----CCCCeEEEEECCHHHHHHHH
Confidence 455 6789999999999999999999999999999999999999999998866321 12357999999999999999
Q ss_pred HHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCC-cHHH
Q 043110 128 EILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELG-FGKE 206 (316)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~-~~~~ 206 (316)
+.+++++...+ ..+..+.|+.....+...+..+++|+|+||++|.+.+.......+.+++++|+||||++.+.. +...
T Consensus 79 ~~~~~~~~~~~-~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i 157 (696)
T 2ykg_A 79 SVFSKYFERHG-YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMI 157 (696)
T ss_dssp HHHHHHTTTTT-CCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHH
T ss_pred HHHHHHhccCC-ceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHH
Confidence 99999875433 556667777655555555566799999999999999986433357789999999999988654 2222
Q ss_pred HHHHHHHhccCcccccCCCCccccccceEEEEeeecc
Q 043110 207 IEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLN 243 (316)
Q Consensus 207 i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~ 243 (316)
+...+...-. ....+..+++++|||+.
T Consensus 158 ~~~~l~~~~~----------~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 158 MFNYLDQKLG----------GSSGPLPQVIGLTASVG 184 (696)
T ss_dssp HHHHHHHHHT----------TCCSCCCEEEEEESCCC
T ss_pred HHHHHHHhhc----------ccCCCCCeEEEEeCccc
Confidence 2222222100 11123689999999986
No 43
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.93 E-value=5e-26 Score=193.12 Aligned_cols=180 Identities=19% Similarity=0.161 Sum_probs=118.2
Q ss_pred cCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHH-HHHHHHH
Q 043110 54 LGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLL-VYEILQK 132 (316)
Q Consensus 54 ~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q-~~~~~~~ 132 (316)
.+...|+++|.++++.++.++++++.+|||+|||++|+++++..+..... ...+.++||++|+++|+.| +.+.+..
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~~~~lil~p~~~L~~q~~~~~~~~ 105 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK---ASEPGKVIVLVNKVLLVEQLFRKEFQP 105 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH---TTCCCCEEEEESSHHHHHHHHHHTHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc---ccCCCcEEEEECHHHHHHHHHHHHHHH
Confidence 34457999999999999999999999999999999999999887755321 1235569999999999999 7778888
Q ss_pred HHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCc-----cccCceeEEEEecchhhhcCCcHHHH
Q 043110 133 LLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSS-----FLHTNLRWIIFDEADRILELGFGKEI 207 (316)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~-----~~~~~l~~lViDEad~l~~~~~~~~i 207 (316)
+... ...+....|+.........+..+++|+|+||+++...+..... ..+.+++++|+||||++.+.++...+
T Consensus 106 ~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~ 183 (216)
T 3b6e_A 106 FLKK--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNI 183 (216)
T ss_dssp HHTT--TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHH
T ss_pred Hhcc--CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHH
Confidence 7654 2444555555544333334445689999999999998876432 45678999999999999877655544
Q ss_pred -HHHHHHh-ccCcccccCCCCccccccceEEEEeee
Q 043110 208 -EEILDIL-GSRNIASIGEGNEVSNVKRQNLLLSAT 241 (316)
Q Consensus 208 -~~i~~~l-~~~~~~~~~~~~~~~~~~~q~i~~SAT 241 (316)
..++... +.... ........+..+++++|||
T Consensus 184 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 184 MRHYLMQKLKNNRL---KKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHH---HHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHhcccccc---cccccCCCCcceEEEeecC
Confidence 2322221 10000 0000111237899999998
No 44
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.9e-25 Score=226.51 Aligned_cols=176 Identities=26% Similarity=0.255 Sum_probs=144.6
Q ss_pred HHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHH
Q 043110 52 ERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQ 131 (316)
Q Consensus 52 ~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~ 131 (316)
..++|. |+++|.++++.+..|+++++++|||+|||++|.+|++..+.. +.++||++|+++|+.|+++.+.
T Consensus 81 ~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~---------g~rvL~l~PtkaLa~Q~~~~l~ 150 (1010)
T 2xgj_A 81 RTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---------KQRVIYTSPIKALSNQKYRELL 150 (1010)
T ss_dssp CCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT---------TCEEEEEESSHHHHHHHHHHHH
T ss_pred HhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc---------CCeEEEECChHHHHHHHHHHHH
Confidence 567887 999999999999999999999999999999999999888753 5679999999999999999998
Q ss_pred HHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHH
Q 043110 132 KLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 211 (316)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~ 211 (316)
.++. .++.+.|+.... ..++|+|+||++|.+++.+ ....+.+++++||||||++.+++++..++.++
T Consensus 151 ~~~~-----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~-~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il 217 (1010)
T 2xgj_A 151 AEFG-----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYR-GSEVMREVAWVIFDEVHYMRDKERGVVWEETI 217 (1010)
T ss_dssp HHHS-----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHH-TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHH
T ss_pred HHhC-----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHc-CcchhhcCCEEEEechhhhcccchhHHHHHHH
Confidence 8764 344555655432 3578999999999998876 44556799999999999999999999999999
Q ss_pred HHhccCcccccCCCCccccccceEEEEeeecchhHH--HHHHHhcCCCEEEEcCCC
Q 043110 212 DILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVN--HLTKISLETPVLIGLDEK 265 (316)
Q Consensus 212 ~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~--~~~~~~l~~p~~i~~~~~ 265 (316)
..++. ..|++++|||+++... .........|+.+...+.
T Consensus 218 ~~l~~---------------~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~ 258 (1010)
T 2xgj_A 218 ILLPD---------------KVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF 258 (1010)
T ss_dssp HHSCT---------------TCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECC
T ss_pred HhcCC---------------CCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC
Confidence 98876 8999999999986533 233334466776665543
No 45
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.93 E-value=1.5e-25 Score=215.72 Aligned_cols=172 Identities=17% Similarity=0.187 Sum_probs=134.5
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhc
Q 043110 58 APTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRF 137 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 137 (316)
+|+|+|.++++.++.|+|+++.+|||+|||++|++|+++.+..... ..+.++||++||++|+.|+++.++.++...
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC----GQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS----SCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc----CCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 5999999999999999999999999999999999999998876321 235679999999999999999999998765
Q ss_pred CCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCc-HHHHHHHHHHhcc
Q 043110 138 RWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGF-GKEIEEILDILGS 216 (316)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~-~~~i~~i~~~l~~ 216 (316)
+ ..+..+.|+.....+...+..+++|+|+||++|..++.......+.+++++|+||||++.+.+. ...+...+.....
T Consensus 80 ~-~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 158 (555)
T 3tbk_A 80 G-YNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLG 158 (555)
T ss_dssp T-CCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTS
T ss_pred C-cEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhc
Confidence 3 5666777777665555566667899999999999999874443677899999999999988653 2222233322211
Q ss_pred CcccccCCCCccccccceEEEEeeecch
Q 043110 217 RNIASIGEGNEVSNVKRQNLLLSATLNE 244 (316)
Q Consensus 217 ~~~~~~~~~~~~~~~~~q~i~~SAT~~~ 244 (316)
....+..|++++|||++.
T Consensus 159 ----------~~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 159 ----------ESRDPLPQVVGLTASVGV 176 (555)
T ss_dssp ----------SCCSCCCEEEEEESCCCC
T ss_pred ----------cccCCCCeEEEEecCccc
Confidence 112236899999999954
No 46
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.93 E-value=7.9e-25 Score=220.03 Aligned_cols=175 Identities=16% Similarity=0.159 Sum_probs=131.1
Q ss_pred HcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHH
Q 043110 53 RLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQK 132 (316)
Q Consensus 53 ~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 132 (316)
.+|+..|+|+|.++++.++.|+|+++.+|||+|||++|++|+++.+..... ..+.++|||+||++|+.|+++.++.
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~----~~~~~~Lvl~Pt~~L~~Q~~~~~~~ 318 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA----GRKAKVVFLATKVPVYEQQKNVFKH 318 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS----SCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc----cCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999876321 2356799999999999999999999
Q ss_pred HHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHH-HHHHH
Q 043110 133 LLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKE-IEEIL 211 (316)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~-i~~i~ 211 (316)
++...+ ..+..++|+.........+..+++|+|+||++|.+++.......+.+++++|+||||++.+.+.... +..++
T Consensus 319 ~~~~~~-~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~ 397 (797)
T 4a2q_A 319 HFERQG-YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYL 397 (797)
T ss_dssp HHGGGT-CCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHH
T ss_pred hcccCC-ceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHH
Confidence 987553 5667777887766666677778999999999999999864333678899999999999987653222 22222
Q ss_pred HHhccCcccccCCCCccccccceEEEEeeecc
Q 043110 212 DILGSRNIASIGEGNEVSNVKRQNLLLSATLN 243 (316)
Q Consensus 212 ~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~ 243 (316)
..... ...+..|++++|||++
T Consensus 398 ~~~~~-----------~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 398 EQKFN-----------SASQLPQILGLTASVG 418 (797)
T ss_dssp HHHHT-----------TCCCCCEEEEEESCCC
T ss_pred HHhhc-----------cCCCCCeEEEEcCCcc
Confidence 22110 0123689999999985
No 47
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.93 E-value=2.5e-25 Score=236.39 Aligned_cols=192 Identities=18% Similarity=0.149 Sum_probs=142.6
Q ss_pred CCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhC-CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCC
Q 043110 41 GLDSTLCDQLRERLGFEAPTKVQAQAIPVILS-GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 119 (316)
Q Consensus 41 ~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~-g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt 119 (316)
.|.....+.+ ...+|..++|+|.++++.++. ++|++++||||||||++|.+|+++.+.+. .+.++||++|+
T Consensus 910 ~L~~~~~e~l-~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~-------~~~kavyi~P~ 981 (1724)
T 4f92_B 910 ALRNSAFESL-YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS-------SEGRCVYITPM 981 (1724)
T ss_dssp GSCCHHHHTT-TTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC-------TTCCEEEECSC
T ss_pred cccCHHHHHH-HHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC-------CCCEEEEEcCh
Confidence 3555566666 345899999999999999975 56799999999999999999999998762 34569999999
Q ss_pred hHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCc-cccCceeEEEEecchhh
Q 043110 120 SELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSS-FLHTNLRWIIFDEADRI 198 (316)
Q Consensus 120 ~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~-~~~~~l~~lViDEad~l 198 (316)
++||.|+++.+++.........+....|+.... . ....+++|+|+|||++..++++... ..+.+++++|+||+|.+
T Consensus 982 raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~--~-~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l 1058 (1724)
T 4f92_B 982 EALAEQVYMDWYEKFQDRLNKKVVLLTGETSTD--L-KLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLI 1058 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHH--H-HHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGG
T ss_pred HHHHHHHHHHHHHHhchhcCCEEEEEECCCCcc--h-hhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhc
Confidence 999999999987755432234555555543322 2 2234579999999999887765433 24678999999999988
Q ss_pred hcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHh
Q 043110 199 LELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKIS 253 (316)
Q Consensus 199 ~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~ 253 (316)
.+ .++..++.++.++... ......+.|+|++|||+++ ..+++++.
T Consensus 1059 ~d-~rg~~le~il~rl~~i--------~~~~~~~~riI~lSATl~N-~~dla~WL 1103 (1724)
T 4f92_B 1059 GG-ENGPVLEVICSRMRYI--------SSQIERPIRIVALSSSLSN-AKDVAHWL 1103 (1724)
T ss_dssp GS-TTHHHHHHHHHHHHHH--------HHTTSSCCEEEEEESCBTT-HHHHHHHH
T ss_pred CC-CCCccHHHHHHHHHHH--------HhhcCCCceEEEEeCCCCC-HHHHHHHh
Confidence 76 4778888777766421 0112337899999999984 56666644
No 48
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.93 E-value=4e-25 Score=190.79 Aligned_cols=185 Identities=21% Similarity=0.222 Sum_probs=131.8
Q ss_pred CCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChH
Q 043110 42 LDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSE 121 (316)
Q Consensus 42 l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~ 121 (316)
.++.+.+.+..+ +.-.++++|.++++.+..|+++++.||||||||.++.+++++....... ..+.++++++|+++
T Consensus 46 ~~~~~~~~~~~~-~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----~~~~~~l~~~p~~~ 120 (235)
T 3llm_A 46 QDHDLQAILQER-ELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----AAECNIVVTQPRRI 120 (235)
T ss_dssp HCHHHHHHHHHH-HTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----GGGCEEEEEESSHH
T ss_pred cCHHHHHHHHHH-hcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----CCceEEEEeccchH
Confidence 344444444333 3334789999999999999999999999999999999998887665322 23567999999999
Q ss_pred HHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhh-hc
Q 043110 122 LCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRI-LE 200 (316)
Q Consensus 122 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l-~~ 200 (316)
|+.|+.+.+............+....... .....+++|+|+|||++.+++.. .+.+++++|+||||.+ ++
T Consensus 121 la~q~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~ 191 (235)
T 3llm_A 121 SAVSVAERVAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHERDIN 191 (235)
T ss_dssp HHHHHHHHHHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHH
T ss_pred HHHHHHHHHHHHhccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccCCcc
Confidence 99999887765443211112222111110 00013478999999999999875 3678999999999986 66
Q ss_pred CCcH-HHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCE
Q 043110 201 LGFG-KEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPV 258 (316)
Q Consensus 201 ~~~~-~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~ 258 (316)
.+|. ..++.++...+ +.|+++||||++.+. +.+.+...|+
T Consensus 192 ~~~~~~~l~~i~~~~~----------------~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 192 TDFLLVVLRDVVQAYP----------------EVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHHHHHHHHHCT----------------TSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred hHHHHHHHHHHHhhCC----------------CCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 6666 45666665543 689999999999876 6666666665
No 49
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.92 E-value=9.7e-25 Score=213.96 Aligned_cols=176 Identities=19% Similarity=0.223 Sum_probs=138.9
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHH
Q 043110 49 QLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYE 128 (316)
Q Consensus 49 ~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~ 128 (316)
+..+.+|+ +|+++|..++|.++.|+ +++++||+|||++|.+|++..... |..++||+||++||.|.++
T Consensus 103 a~~R~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~---------g~~v~VvTpTreLA~Qdae 170 (922)
T 1nkt_A 103 AAWRVLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA---------GNGVHIVTVNDYLAKRDSE 170 (922)
T ss_dssp HHHHHHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT---------TSCEEEEESSHHHHHHHHH
T ss_pred HHHHHcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh---------CCCeEEEeCCHHHHHHHHH
Confidence 44346899 79999999999999998 999999999999999999755443 3359999999999999999
Q ss_pred HHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHH-HHHHhcCC-----ccccCceeEEEEecchhhh-cC
Q 043110 129 ILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHL-LDHLKHTS-----SFLHTNLRWIIFDEADRIL-EL 201 (316)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~~~-----~~~~~~l~~lViDEad~l~-~~ 201 (316)
++..+...++ +.+++++||.+.... ....+++|+||||++| ++++...- ...+..+.++||||||+|+ |.
T Consensus 171 ~m~~l~~~lG-Lsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDe 247 (922)
T 1nkt_A 171 WMGRVHRFLG-LQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDE 247 (922)
T ss_dssp HHHHHHHHTT-CCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTG
T ss_pred HHHHHHhhcC-CeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhc
Confidence 9999998865 677888888775433 3334689999999999 78876531 3456789999999999999 43
Q ss_pred ---------------CcHHHHHHHHHHhccCcccccCCCCccccccceEE-----------------EEeeecchh
Q 043110 202 ---------------GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNL-----------------LLSATLNEK 245 (316)
Q Consensus 202 ---------------~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i-----------------~~SAT~~~~ 245 (316)
+|...+..|+..++... .-....+.+|++ ++|||++.-
T Consensus 248 artPLiiSg~~~~~~~~y~~i~~iv~~L~~~~------dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l 317 (922)
T 1nkt_A 248 ARTPLIISGPADGASNWYTEFARLAPLMEKDV------HYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPL 317 (922)
T ss_dssp GGSCEEEEEECCCCHHHHHHHHHHHHHSCBTT------TEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCH
T ss_pred CccceeecCCCCcchhHHHHHHHHHHhCcccc------cceeccCcceEEecHhHHHHHHHHhCCccccCCcchhH
Confidence 47789999999997210 001112378888 999998753
No 50
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.92 E-value=9.7e-25 Score=213.58 Aligned_cols=150 Identities=21% Similarity=0.203 Sum_probs=113.0
Q ss_pred HHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHH
Q 043110 52 ERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQ 131 (316)
Q Consensus 52 ~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~ 131 (316)
+.+|. +|+++|..++|.++.|+ +++++||+|||++|++|++..... +.+++|++||++||.|+++++.
T Consensus 69 R~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~---------g~~vlVltPTreLA~Q~~e~~~ 136 (853)
T 2fsf_A 69 RVFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT---------GKGVHVVTVNDYLAQRDAENNR 136 (853)
T ss_dssp HHHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT---------SSCCEEEESSHHHHHHHHHHHH
T ss_pred HHcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc---------CCcEEEEcCCHHHHHHHHHHHH
Confidence 44686 69999999999999998 999999999999999999865433 4469999999999999999999
Q ss_pred HHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHH-HHHHhcCC-----ccccCceeEEEEecchhhh-cCC--
Q 043110 132 KLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHL-LDHLKHTS-----SFLHTNLRWIIFDEADRIL-ELG-- 202 (316)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~~~-----~~~~~~l~~lViDEad~l~-~~~-- 202 (316)
.++..++ +.+.+++||.+.. .+.+..+++|+||||++| ++++...- ...++.+.++|+||||+|+ |.+
T Consensus 137 ~l~~~lg-l~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~t 213 (853)
T 2fsf_A 137 PLFEFLG-LTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEART 213 (853)
T ss_dssp HHHHHTT-CCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTC
T ss_pred HHHHhcC-CeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcc
Confidence 9998865 6777888887754 333444689999999999 78887532 2456789999999999999 543
Q ss_pred -------------cHHHHHHHHHHhcc
Q 043110 203 -------------FGKEIEEILDILGS 216 (316)
Q Consensus 203 -------------~~~~i~~i~~~l~~ 216 (316)
|...+..|+..++.
T Consensus 214 pLIiSg~~~~~~~~y~~i~~iv~~L~~ 240 (853)
T 2fsf_A 214 PLIISGPAEDSSEMYKRVNKIIPHLIR 240 (853)
T ss_dssp EEEEEEC--------------------
T ss_pred cccccCCCccchhHHHHHHHHHHhchh
Confidence 56788888888864
No 51
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.92 E-value=1.8e-24 Score=220.65 Aligned_cols=163 Identities=23% Similarity=0.252 Sum_probs=136.1
Q ss_pred HHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHH
Q 043110 52 ERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQ 131 (316)
Q Consensus 52 ~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~ 131 (316)
..++|. |+++|.++|+.+++|+|+++.+|||+|||++|++|+...+.. +.++||++|+++|+.|+++.++
T Consensus 34 ~~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~---------g~~vlvl~PtraLa~Q~~~~l~ 103 (997)
T 4a4z_A 34 RSWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN---------MTKTIYTSPIKALSNQKFRDFK 103 (997)
T ss_dssp CCCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT---------TCEEEEEESCGGGHHHHHHHHH
T ss_pred HhCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc---------CCeEEEEeCCHHHHHHHHHHHH
Confidence 456786 899999999999999999999999999999999998877643 5679999999999999999888
Q ss_pred HHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHH
Q 043110 132 KLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEIL 211 (316)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~ 211 (316)
.++. ...+..+.|+... ...++|+|+||++|.+++.. ....+.+++++||||||++.+++++..++.++
T Consensus 104 ~~~~---~~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~-~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii 172 (997)
T 4a4z_A 104 ETFD---DVNIGLITGDVQI-------NPDANCLIMTTEILRSMLYR-GADLIRDVEFVIFDEVHYVNDQDRGVVWEEVI 172 (997)
T ss_dssp TTC-----CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHH-TCSGGGGEEEEEECCTTCCCTTCTTCCHHHHH
T ss_pred HHcC---CCeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHh-CchhhcCCCEEEEECcccccccchHHHHHHHH
Confidence 7542 3455666666543 23479999999999998876 34456789999999999999999999999999
Q ss_pred HHhccCcccccCCCCccccccceEEEEeeecchhHHHHHH
Q 043110 212 DILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTK 251 (316)
Q Consensus 212 ~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~ 251 (316)
..++. ..|++++|||+++.. .+..
T Consensus 173 ~~l~~---------------~v~iIlLSAT~~n~~-ef~~ 196 (997)
T 4a4z_A 173 IMLPQ---------------HVKFILLSATVPNTY-EFAN 196 (997)
T ss_dssp HHSCT---------------TCEEEEEECCCTTHH-HHHH
T ss_pred Hhccc---------------CCCEEEEcCCCCChH-HHHH
Confidence 99887 899999999998654 4444
No 52
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.91 E-value=3.7e-24 Score=227.49 Aligned_cols=194 Identities=20% Similarity=0.206 Sum_probs=144.5
Q ss_pred CCHHHHHHHHHHcCCCCCcHHHHHHHHHHh-CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCC--CCCCCCeeEEEEeC
Q 043110 42 LDSTLCDQLRERLGFEAPTKVQAQAIPVIL-SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPR--IDRSSGTFALVLVP 118 (316)
Q Consensus 42 l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il-~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~--~~~~~~~~~lil~P 118 (316)
|++.....+ -||++++++|++++|.++ .++|++++||||||||++|.+|+++.+.+.... .....+.++||++|
T Consensus 66 Lp~~~~~~f---~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP 142 (1724)
T 4f92_B 66 LPKYAQAGF---EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAP 142 (1724)
T ss_dssp SCGGGSTTC---TTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECS
T ss_pred cCHHHHHhc---CCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECC
Confidence 455544444 289999999999999877 578999999999999999999999999764332 12345788999999
Q ss_pred ChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCc-cccCceeEEEEecchh
Q 043110 119 TSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSS-FLHTNLRWIIFDEADR 197 (316)
Q Consensus 119 t~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~-~~~~~l~~lViDEad~ 197 (316)
+++||.|+++.+.+.+...+ +.+....|+...... ....++|+|+||+++..++++... ..+++++++|+||+|.
T Consensus 143 ~kALa~e~~~~l~~~~~~~g-i~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~ 218 (1724)
T 4f92_B 143 MRSLVQEMVGSFGKRLATYG-ITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHL 218 (1724)
T ss_dssp SHHHHHHHHHHHHHHHTTTT-CCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGG
T ss_pred HHHHHHHHHHHHHHHHhhCC-CEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchh
Confidence 99999999999998887655 455666676544321 134589999999998666654322 2467899999999998
Q ss_pred hhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHH
Q 043110 198 ILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKI 252 (316)
Q Consensus 198 l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~ 252 (316)
+-+ .++..++.++.++... .....+..|+|++|||+| +..++++.
T Consensus 219 l~d-~RG~~lE~~l~rl~~~--------~~~~~~~~riI~LSATl~-N~~dvA~w 263 (1724)
T 4f92_B 219 LHD-DRGPVLEALVARAIRN--------IEMTQEDVRLIGLSATLP-NYEDVATF 263 (1724)
T ss_dssp GGS-TTHHHHHHHHHHHHHH--------HHHHTCCCEEEEEECSCT-THHHHHHH
T ss_pred cCC-ccHHHHHHHHHHHHHH--------HHhCCCCCcEEEEecccC-CHHHHHHH
Confidence 766 6888888777654310 011223789999999998 45666654
No 53
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.91 E-value=6.9e-24 Score=215.94 Aligned_cols=175 Identities=16% Similarity=0.153 Sum_probs=129.1
Q ss_pred HcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHH
Q 043110 53 RLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQK 132 (316)
Q Consensus 53 ~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 132 (316)
-.|+..|+++|.++++.++.|+|+++.+|||+|||++|++|+++.+.... ...+.++|||+||++|+.|+++.++.
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~----~~~~~~vLvl~Pt~~L~~Q~~~~~~~ 318 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP----AGRKAKVVFLATKVPVYEQQKNVFKH 318 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC----SSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc----ccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 34688899999999999999999999999999999999999988876532 12256799999999999999999999
Q ss_pred HHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCc-HHHHHHHH
Q 043110 133 LLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGF-GKEIEEIL 211 (316)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~-~~~i~~i~ 211 (316)
++... ...+..++|+.....+...+..+++|+|+||++|.+++.......+.+++++|+||||++...+. ...+..++
T Consensus 319 ~~~~~-~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~ 397 (936)
T 4a2w_A 319 HFERQ-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYL 397 (936)
T ss_dssp HHHTT-TCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHH
T ss_pred Hhccc-CceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHH
Confidence 98754 35666777777666555566667899999999999999864443677899999999999887643 22222222
Q ss_pred HHhccCcccccCCCCccccccceEEEEeeecc
Q 043110 212 DILGSRNIASIGEGNEVSNVKRQNLLLSATLN 243 (316)
Q Consensus 212 ~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~ 243 (316)
..... ...+..|++++|||+.
T Consensus 398 ~~~~~-----------~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 398 EQKFN-----------SASQLPQILGLTASVG 418 (936)
T ss_dssp HHHHT-----------TCSCCCEEEEEESCCC
T ss_pred HHhhc-----------cCCCcCeEEEecCCcc
Confidence 22110 0123689999999985
No 54
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.90 E-value=6.1e-23 Score=203.79 Aligned_cols=170 Identities=25% Similarity=0.340 Sum_probs=127.9
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHhCC------CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEe
Q 043110 44 STLCDQLRERLGFEAPTKVQAQAIPVILSG------RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 117 (316)
Q Consensus 44 ~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g------~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~ 117 (316)
..+.+.+.+.++| .||++|+++++.++.+ ++++++++||||||++|++|++..+.. +.+++|++
T Consensus 355 ~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---------g~qvlvla 424 (780)
T 1gm5_A 355 GKLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---------GFQTAFMV 424 (780)
T ss_dssp THHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---------TSCEEEEC
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---------CCeEEEEe
Confidence 3455555588999 7999999999999865 589999999999999999999998865 45699999
Q ss_pred CChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHH---HHHHhc-CCcEEEeCcHHHHHHHhcCCccccCceeEEEEe
Q 043110 118 PTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKE---KARLRK-GISILVATPGHLLDHLKHTSSFLHTNLRWIIFD 193 (316)
Q Consensus 118 Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~-~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViD 193 (316)
||++|+.|+++.+.+++...+ ..+..++|+...... ...+.. .++|+|+||+.+.+ ...+.+++++|+|
T Consensus 425 Ptr~La~Q~~~~l~~~~~~~g-i~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~~~~~~l~lVVID 497 (780)
T 1gm5_A 425 PTSILAIQHYRRTVESFSKFN-IHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE------DVHFKNLGLVIID 497 (780)
T ss_dssp SCHHHHHHHHHHHHHHHTCSS-CCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH------CCCCSCCCEEEEE
T ss_pred CcHHHHHHHHHHHHHHhhhcC-ceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh------hhhccCCceEEec
Confidence 999999999999999886543 566677777766543 333444 48999999998754 2345789999999
Q ss_pred cchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHH
Q 043110 194 EADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLT 250 (316)
Q Consensus 194 Ead~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~ 250 (316)
|+|++... . ... +. .....+++++||||+.+....+.
T Consensus 498 EaHr~g~~---q--r~~---l~------------~~~~~~~vL~mSATp~p~tl~~~ 534 (780)
T 1gm5_A 498 EQHRFGVK---Q--REA---LM------------NKGKMVDTLVMSATPIPRSMALA 534 (780)
T ss_dssp SCCCC----------CC---CC------------SSSSCCCEEEEESSCCCHHHHHH
T ss_pred ccchhhHH---H--HHH---HH------------HhCCCCCEEEEeCCCCHHHHHHH
Confidence 99995221 1 000 00 01136899999999877655544
No 55
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.89 E-value=3.8e-22 Score=206.27 Aligned_cols=188 Identities=23% Similarity=0.262 Sum_probs=146.2
Q ss_pred cCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhC----CC--cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCee
Q 043110 39 SLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILS----GR--DVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 112 (316)
Q Consensus 39 ~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~----g~--d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 112 (316)
.++.+....+.+.+.++|. |||+|.++++.++. |+ |++++++||+|||++|+++++..+.. +.+
T Consensus 585 ~~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---------g~~ 654 (1151)
T 2eyq_A 585 AFKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---------HKQ 654 (1151)
T ss_dssp CCCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---------TCE
T ss_pred CCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---------CCe
Confidence 4567888888888889997 79999999999886 66 99999999999999999998876643 557
Q ss_pred EEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHH---HHHHhc-CCcEEEeCcHHHHHHHhcCCccccCcee
Q 043110 113 ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKE---KARLRK-GISILVATPGHLLDHLKHTSSFLHTNLR 188 (316)
Q Consensus 113 ~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~-~~~IlV~Tp~~l~~~l~~~~~~~~~~l~ 188 (316)
++|++||++|+.|+++.+.+++...+ ..+..+.+....... ...+.. .++|+|+||+.+. ....+.+++
T Consensus 655 vlvlvPt~~La~Q~~~~~~~~~~~~~-i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~------~~~~~~~l~ 727 (1151)
T 2eyq_A 655 VAVLVPTTLLAQQHYDNFRDRFANWP-VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ------SDVKFKDLG 727 (1151)
T ss_dssp EEEECSSHHHHHHHHHHHHHHSTTTT-CCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH------SCCCCSSEE
T ss_pred EEEEechHHHHHHHHHHHHHHhhcCC-CeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh------CCccccccc
Confidence 99999999999999999998775543 444555555444332 333444 4899999997663 234567999
Q ss_pred EEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcC
Q 043110 189 WIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLD 263 (316)
Q Consensus 189 ~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~ 263 (316)
++|+||||++ +.....++..++. ..+++++|||+++....+....+.++..+...
T Consensus 728 lvIiDEaH~~-----g~~~~~~l~~l~~---------------~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~ 782 (1151)
T 2eyq_A 728 LLIVDEEHRF-----GVRHKERIKAMRA---------------NVDILTLTATPIPRTLNMAMSGMRDLSIIATP 782 (1151)
T ss_dssp EEEEESGGGS-----CHHHHHHHHHHHT---------------TSEEEEEESSCCCHHHHHHHTTTSEEEECCCC
T ss_pred eEEEechHhc-----ChHHHHHHHHhcC---------------CCCEEEEcCCCChhhHHHHHhcCCCceEEecC
Confidence 9999999993 3455666666665 78999999999888888877777776665443
No 56
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.89 E-value=1.9e-23 Score=207.15 Aligned_cols=179 Identities=19% Similarity=0.186 Sum_probs=125.5
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHH-HHHHHHHHhh
Q 043110 58 APTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLV-YEILQKLLHR 136 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~-~~~~~~~~~~ 136 (316)
.|+++|.++++.++.|+|+++.+|||+|||++|++|+++.+..... .+.+.++|||+|+++|+.|+ ++.++.++..
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK---ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH---HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc---cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 5999999999999999999999999999999999999998766321 11235699999999999999 9999998754
Q ss_pred cCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhc-----CCccccCceeEEEEecchhhhcCC-cHHHHHHH
Q 043110 137 FRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKH-----TSSFLHTNLRWIIFDEADRILELG-FGKEIEEI 210 (316)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~-----~~~~~~~~l~~lViDEad~l~~~~-~~~~i~~i 210 (316)
...+..+.|+.........+...++|+|+||++|...+.+ ...+.+.++++|||||||++...+ +...+..+
T Consensus 84 --~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~ 161 (699)
T 4gl2_A 84 --WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 161 (699)
T ss_dssp --TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHH
T ss_pred --CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHH
Confidence 2556666776655544455567789999999999988842 234566789999999999986543 33333333
Q ss_pred HHHh-ccCcccccCCCCccccccceEEEEeeecch
Q 043110 211 LDIL-GSRNIASIGEGNEVSNVKRQNLLLSATLNE 244 (316)
Q Consensus 211 ~~~l-~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~ 244 (316)
+... ..... ........+..|++++|||++.
T Consensus 162 l~~~~~~~~~---~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 162 LMQKLKNNRL---KKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp HHHHHHHHHH---HC----CCCCCEEEEECSCCCC
T ss_pred HHhhhccccc---ccccccCCCCCEEEEecccccc
Confidence 3221 10000 0000011126799999999986
No 57
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.89 E-value=2.8e-23 Score=184.02 Aligned_cols=160 Identities=18% Similarity=0.206 Sum_probs=121.0
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhc
Q 043110 58 APTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRF 137 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 137 (316)
.|+++|.++++.++.+++.++++|||+|||+++++++...+... +.++||++|+++|+.|+.+.+++++..
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--------~~~~lil~Pt~~L~~q~~~~l~~~~~~- 183 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--------EGKILIIVPTTALTTQMADDFVDYRLF- 183 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC--------SSEEEEECSSHHHHHHHHHHHHHHTSC-
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC--------CCeEEEEECCHHHHHHHHHHHHHhccc-
Confidence 79999999999999888899999999999999988887766541 236999999999999999999987643
Q ss_pred CCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhccC
Q 043110 138 RWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSR 217 (316)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~ 217 (316)
.......+.+|..... ....+.+|+|+||+.+... ....+.+++++|+||||++.+ ..+..++..+..
T Consensus 184 ~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~----~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~- 251 (282)
T 1rif_A 184 SHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG----KSISSIISGLNN- 251 (282)
T ss_dssp CGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS----CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTT-
T ss_pred ccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh----HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhc-
Confidence 2234455555544321 1124579999999977542 223456899999999999864 466666666644
Q ss_pred cccccCCCCccccccceEEEEeeecchhHHHHHHH
Q 043110 218 NIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKI 252 (316)
Q Consensus 218 ~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~ 252 (316)
..+++++|||++.....+...
T Consensus 252 --------------~~~~l~lSATp~~~~~~~~~l 272 (282)
T 1rif_A 252 --------------CMFKFGLSGSLRDGKANIMQY 272 (282)
T ss_dssp --------------CCEEEEECSSCCTTSTTHHHH
T ss_pred --------------CCeEEEEeCCCCCcchHHHHH
Confidence 789999999998765544443
No 58
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.89 E-value=3.3e-22 Score=188.47 Aligned_cols=164 Identities=20% Similarity=0.174 Sum_probs=127.8
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhc
Q 043110 58 APTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRF 137 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 137 (316)
.|+|+|.++++.++.+ ++++.+|||+|||++++++++..+.. .+.++||++|+++|+.|+.+.+.+++..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~--------~~~~~liv~P~~~L~~q~~~~~~~~~~~- 78 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK--------YGGKVLMLAPTKPLVLQHAESFRRLFNL- 78 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH--------SCSCEEEECSSHHHHHHHHHHHHHHBCS-
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc--------CCCeEEEEECCHHHHHHHHHHHHHHhCc-
Confidence 5999999999999999 99999999999999999999888762 2445999999999999999999987632
Q ss_pred CCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhccC
Q 043110 138 RWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSR 217 (316)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~ 217 (316)
....+....|+..... ......+++|+|+||+.+...+.. ....+.+++++|+||||++.+......+...+.....
T Consensus 79 ~~~~v~~~~g~~~~~~-~~~~~~~~~ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~- 155 (494)
T 1wp9_A 79 PPEKIVALTGEKSPEE-RSKAWARAKVIVATPQTIENDLLA-GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAK- 155 (494)
T ss_dssp CGGGEEEECSCSCHHH-HHHHHHHCSEEEECHHHHHHHHHT-TSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCS-
T ss_pred chhheEEeeCCcchhh-hhhhccCCCEEEecHHHHHHHHhc-CCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCC-
Confidence 2234555666665543 334444689999999999998876 4455678999999999999876544555555554444
Q ss_pred cccccCCCCccccccceEEEEeeecchhHHH
Q 043110 218 NIASIGEGNEVSNVKRQNLLLSATLNEKVNH 248 (316)
Q Consensus 218 ~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~ 248 (316)
..+++++|||+..+...
T Consensus 156 --------------~~~~l~lTaTp~~~~~~ 172 (494)
T 1wp9_A 156 --------------NPLVIGLTASPGSTPEK 172 (494)
T ss_dssp --------------SCCEEEEESCSCSSHHH
T ss_pred --------------CCeEEEEecCCCCCcHH
Confidence 78999999999754433
No 59
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.87 E-value=3.6e-22 Score=191.02 Aligned_cols=172 Identities=16% Similarity=0.198 Sum_probs=128.4
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhc
Q 043110 58 APTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRF 137 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 137 (316)
.|+++|.++++.++.+++++++++||+|||++|+.++...+... +.++|||+|+++|+.|+++.+++++..
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--------~~~vlvl~P~~~L~~Q~~~~~~~~~~~- 183 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--------EGKILIIVPTTALTTQMADDFVDYRLF- 183 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC--------SSEEEEEESSHHHHHHHHHHHHHTTSS-
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC--------CCeEEEEECcHHHHHHHHHHHHHhhcC-
Confidence 69999999999999999999999999999999999988877541 236999999999999999999877433
Q ss_pred CCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhccC
Q 043110 138 RWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSR 217 (316)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~ 217 (316)
....+..+.++.....+ +..+++|+|+||+.+... ....+.+++++|+||||++.. ..+..++..+..
T Consensus 184 ~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~- 251 (510)
T 2oca_A 184 SHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG----KSISSIISGLNN- 251 (510)
T ss_dssp CGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTT-
T ss_pred CccceEEEecCCccccc---cccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhccc-
Confidence 23455566666554332 345689999999976432 334567899999999999865 456666666544
Q ss_pred cccccCCCCccccccceEEEEeeecchhHHHHHH-HhcCCCEEEEcCC
Q 043110 218 NIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTK-ISLETPVLIGLDE 264 (316)
Q Consensus 218 ~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~-~~l~~p~~i~~~~ 264 (316)
..+++++|||++.....+.. ..+.+|..+.+..
T Consensus 252 --------------~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~ 285 (510)
T 2oca_A 252 --------------CMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTT 285 (510)
T ss_dssp --------------CCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCC
T ss_pred --------------CcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCH
Confidence 67999999999876543222 2344565544443
No 60
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.86 E-value=3.1e-21 Score=188.88 Aligned_cols=139 Identities=20% Similarity=0.239 Sum_probs=113.8
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHH
Q 043110 47 CDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLV 126 (316)
Q Consensus 47 ~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~ 126 (316)
.++-.+.+|+ +|+++|..++|.++.|+ +++++||+|||++|.+|++..... |..++|++||++||.|.
T Consensus 69 REAs~R~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~---------G~qv~VvTPTreLA~Qd 136 (997)
T 2ipc_A 69 RESAKRYLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT---------GKGVHVVTVNDYLARRD 136 (997)
T ss_dssp HHHHHHHTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT---------CSCCEEEESSHHHHHHH
T ss_pred HHHHHHHhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh---------CCCEEEEeCCHHHHHHH
Confidence 3444446899 79999999999999998 999999999999999999654433 34599999999999999
Q ss_pred HHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHH-HHHHhcCC-----ccccC---ceeEEEEecchh
Q 043110 127 YEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHL-LDHLKHTS-----SFLHT---NLRWIIFDEADR 197 (316)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l-~~~l~~~~-----~~~~~---~l~~lViDEad~ 197 (316)
++.+..+...++ +.+.+++||.+... +....+++|+||||++| ++++...- ...++ .+.++|+||+|.
T Consensus 137 ae~m~~l~~~lG-Lsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDs 213 (997)
T 2ipc_A 137 AEWMGPVYRGLG-LSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDS 213 (997)
T ss_dssp HHHHHHHHHTTT-CCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHH
T ss_pred HHHHHHHHHhcC-CeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHH
Confidence 999999998765 67778888877433 33344689999999999 88887642 24566 899999999999
Q ss_pred hhc
Q 043110 198 ILE 200 (316)
Q Consensus 198 l~~ 200 (316)
|+.
T Consensus 214 mLi 216 (997)
T 2ipc_A 214 ILI 216 (997)
T ss_dssp HTT
T ss_pred HHH
Confidence 873
No 61
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.85 E-value=4.4e-22 Score=187.63 Aligned_cols=167 Identities=15% Similarity=0.099 Sum_probs=117.6
Q ss_pred CCCCCcHHHHHHHHHHhCCCcE-EEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHH
Q 043110 55 GFEAPTKVQAQAIPVILSGRDV-LVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL 133 (316)
Q Consensus 55 g~~~p~~~Q~~~i~~il~g~d~-li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 133 (316)
|+..|+|+|+ +||.+++|+++ ++++|||||||++|++|++..+.. .+.++||++||++|+.|+++.+..+
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--------RRLRTLILAPTRVVAAEMEEALRGL 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTS
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh--------cCCcEEEECCCHHHHHHHHHHhcCc
Confidence 6788999986 79999999986 999999999999999999987765 2456999999999999999877421
Q ss_pred HhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHH
Q 043110 134 LHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDI 213 (316)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~ 213 (316)
........... ....+..|.++|++.+...+.+. ..+.+++++|+||||++ +.++...+..+...
T Consensus 72 -------~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~ 136 (451)
T 2jlq_A 72 -------PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT-DPCSVAARGYISTR 136 (451)
T ss_dssp -------CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC--SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHH
T ss_pred -------eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc--ccccCCCEEEEeCCccC-CcchHHHHHHHHHh
Confidence 11111111110 11234579999999998888653 44678999999999986 43333333333332
Q ss_pred hccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEc
Q 043110 214 LGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGL 262 (316)
Q Consensus 214 l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~ 262 (316)
.. .+.+|+++||||++..+..+ +..++..+.+
T Consensus 137 ~~--------------~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~ 168 (451)
T 2jlq_A 137 VE--------------MGEAAAIFMTATPPGSTDPF---PQSNSPIEDI 168 (451)
T ss_dssp HH--------------TTSCEEEEECSSCTTCCCSS---CCCSSCEEEE
T ss_pred hc--------------CCCceEEEEccCCCccchhh---hcCCCceEec
Confidence 21 12789999999998755432 3345555544
No 62
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.84 E-value=9e-23 Score=198.66 Aligned_cols=182 Identities=13% Similarity=0.094 Sum_probs=128.2
Q ss_pred CCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCC
Q 043110 40 LGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 119 (316)
Q Consensus 40 ~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt 119 (316)
+++++.+.+++ .. ....|+|+|+.++|.+++|+|+++.||||||||++|++|+++.+.. .+.++||++||
T Consensus 155 l~~~~~~~~~l-~~-~~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--------~~~~vLvl~Pt 224 (618)
T 2whx_A 155 VTKSGDYVSAI-TQ-AERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK--------RRLRTLILAPT 224 (618)
T ss_dssp -------CEEC-BC-CCCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESS
T ss_pred ccchHHHHHHH-hh-ccccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCeEEEEcCh
Confidence 56777766666 32 2578999998899999999999999999999999999999998865 24569999999
Q ss_pred hHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhh
Q 043110 120 SELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRIL 199 (316)
Q Consensus 120 ~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~ 199 (316)
|+||.|+++.++. ....+....... ....+..+.++|.+.+...+... ..+.+++++||||||++
T Consensus 225 reLa~Qi~~~l~~-------~~v~~~~~~l~~-----~~tp~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~- 289 (618)
T 2whx_A 225 RVVAAEMEEALRG-------LPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT- 289 (618)
T ss_dssp HHHHHHHHHHTTT-------SCEEECCTTSSC-----CCCSSSCEEEEEHHHHHHHHHHC--SSCCCCSEEEEESTTCC-
T ss_pred HHHHHHHHHHhcC-------CceeEeccccee-----ccCCCceEEEEChHHHHHHHhcc--ccccCCeEEEEECCCCC-
Confidence 9999999987752 111111111000 00112356778888877666542 34678999999999998
Q ss_pred cCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcC
Q 043110 200 ELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLD 263 (316)
Q Consensus 200 ~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~ 263 (316)
+.+|...+..++..++.. .+|+++||||++..+..+.. .+|..+.+.
T Consensus 290 ~~~~~~~~~~i~~~l~~~--------------~~q~il~SAT~~~~~~~~~~---~~~~~~~v~ 336 (618)
T 2whx_A 290 DPCSVAARGYISTRVEMG--------------EAAAIFMTATPPGSTDPFPQ---SNSPIEDIE 336 (618)
T ss_dssp SHHHHHHHHHHHHHHHHT--------------SCEEEEECSSCTTCCCSSCC---CSSCEEEEE
T ss_pred CccHHHHHHHHHHHhccc--------------CccEEEEECCCchhhhhhhc---cCCceeeec
Confidence 667888888888887521 78999999999987654433 355555443
No 63
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.83 E-value=1.5e-20 Score=178.09 Aligned_cols=136 Identities=23% Similarity=0.184 Sum_probs=108.6
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhc
Q 043110 58 APTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRF 137 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 137 (316)
.|+|+|.++++.++.++++++.+|||+|||++|+.++... +.++||++|+++|+.|+++.+.++
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------------~~~~Lvl~P~~~L~~Q~~~~~~~~---- 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF---- 156 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------------CSCEEEEESSHHHHHHHHHHGGGG----
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEECCHHHHHHHHHHHHhC----
Confidence 5999999999999999999999999999999999888754 234999999999999999988873
Q ss_pred CCce-eEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhcc
Q 043110 138 RWIV-PGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216 (316)
Q Consensus 138 ~~~~-~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~ 216 (316)
+ .. +..+.|+.. ...+|+|+||+.+...+... ..+++++|+||||++.+.+|.. +++.++
T Consensus 157 ~-~~~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~~----~~~~~liIvDEaH~~~~~~~~~----~~~~~~- 217 (472)
T 2fwr_A 157 G-EEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYVQ----IAQMSI- 217 (472)
T ss_dssp C-GGGEEEBSSSCB---------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEETGGGTTSTTTHH----HHHTCC-
T ss_pred C-CcceEEECCCcC---------CcCCEEEEEcHHHHHHHHHh----cCCCCEEEEECCcCCCChHHHH----HHHhcC-
Confidence 2 33 455555543 24689999999998766421 1358999999999998877654 444443
Q ss_pred CcccccCCCCccccccceEEEEeeecc
Q 043110 217 RNIASIGEGNEVSNVKRQNLLLSATLN 243 (316)
Q Consensus 217 ~~~~~~~~~~~~~~~~~q~i~~SAT~~ 243 (316)
..+++++|||+.
T Consensus 218 ---------------~~~~l~lSATp~ 229 (472)
T 2fwr_A 218 ---------------APFRLGLTATFE 229 (472)
T ss_dssp ---------------CSEEEEEESCCC
T ss_pred ---------------CCeEEEEecCcc
Confidence 568999999987
No 64
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.81 E-value=9.4e-20 Score=157.25 Aligned_cols=138 Identities=23% Similarity=0.198 Sum_probs=105.3
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhc
Q 043110 58 APTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRF 137 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 137 (316)
.|+++|.++++.++.++++++++|||+|||.+++.++... +.++||++|+++|+.|+.+.+.++
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------------~~~~liv~P~~~L~~q~~~~~~~~---- 156 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF---- 156 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------------CSCEEEEESSHHHHHHHHHHHGGG----
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEeCCHHHHHHHHHHHHhC----
Confidence 6999999999999999999999999999999988776542 234999999999999999888773
Q ss_pred CCce-eEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhcc
Q 043110 138 RWIV-PGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGS 216 (316)
Q Consensus 138 ~~~~-~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~ 216 (316)
+ .. +..+.|+.. ...+|+|+||+.+...... ....++++|+||||++.+..+. .+++.++
T Consensus 157 ~-~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~----~~~~~~llIiDEaH~l~~~~~~----~i~~~~~- 217 (237)
T 2fz4_A 157 G-EEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK----LGNRFMLLIFDEVHHLPAESYV----QIAQMSI- 217 (237)
T ss_dssp C-GGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH----HTTTCSEEEEECSSCCCTTTHH----HHHHTCC-
T ss_pred C-CCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH----hcccCCEEEEECCccCCChHHH----HHHHhcc-
Confidence 2 23 444444433 2468999999998765542 1245889999999999876543 3444443
Q ss_pred CcccccCCCCccccccceEEEEeeecchh
Q 043110 217 RNIASIGEGNEVSNVKRQNLLLSATLNEK 245 (316)
Q Consensus 217 ~~~~~~~~~~~~~~~~~q~i~~SAT~~~~ 245 (316)
..+++++|||++..
T Consensus 218 ---------------~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 218 ---------------APFRLGLTATFERE 231 (237)
T ss_dssp ---------------CSEEEEEEESCC--
T ss_pred ---------------CCEEEEEecCCCCC
Confidence 56889999998754
No 65
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.80 E-value=1.7e-20 Score=181.99 Aligned_cols=144 Identities=22% Similarity=0.167 Sum_probs=110.4
Q ss_pred CcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcC
Q 043110 59 PTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFR 138 (316)
Q Consensus 59 p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 138 (316)
+.+.|+.+++.+..+++++++||||||||++|.+|+++. +.++||++|||+||.|+++.+.+...
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------------g~~vLVl~PTReLA~Qia~~l~~~~g--- 282 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------------GYKVLVLNPSVAATLGFGAYMSKAHG--- 282 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------------TCCEEEEESCHHHHHHHHHHHHHHHS---
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------------CCeEEEEcchHHHHHHHHHHHHHHhC---
Confidence 345555555666688899999999999999999988751 34599999999999999987765542
Q ss_pred CceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhccCc
Q 043110 139 WIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRN 218 (316)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~ 218 (316)
.......|+.. ...+++|+|+||++|+ .. ..+.+++++++||||||+ ++.+|...+..+++.++.
T Consensus 283 -~~vg~~vG~~~-------~~~~~~IlV~TPGrLl---~~-~~l~l~~l~~lVlDEAH~-l~~~~~~~l~~Il~~l~~-- 347 (666)
T 3o8b_A 283 -IDPNIRTGVRT-------ITTGAPVTYSTYGKFL---AD-GGCSGGAYDIIICDECHS-TDSTTILGIGTVLDQAET-- 347 (666)
T ss_dssp -CCCEEECSSCE-------ECCCCSEEEEEHHHHH---HT-TSCCTTSCSEEEETTTTC-CSHHHHHHHHHHHHHTTT--
T ss_pred -CCeeEEECcEe-------ccCCCCEEEECcHHHH---hC-CCcccCcccEEEEccchh-cCccHHHHHHHHHHhhhh--
Confidence 23344455533 2456899999999983 32 456677899999999965 667788889999999876
Q ss_pred ccccCCCCccccccce--EEEEeeecchh
Q 043110 219 IASIGEGNEVSNVKRQ--NLLLSATLNEK 245 (316)
Q Consensus 219 ~~~~~~~~~~~~~~~q--~i~~SAT~~~~ 245 (316)
.+| ++++|||++..
T Consensus 348 -------------~~~~llil~SAT~~~~ 363 (666)
T 3o8b_A 348 -------------AGARLVVLATATPPGS 363 (666)
T ss_dssp -------------TTCSEEEEEESSCTTC
T ss_pred -------------cCCceEEEECCCCCcc
Confidence 444 77889999974
No 66
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.80 E-value=6.5e-22 Score=193.96 Aligned_cols=161 Identities=17% Similarity=0.151 Sum_probs=105.1
Q ss_pred HcCCC-----CCcHHHH-----HHHHHHh------CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEE
Q 043110 53 RLGFE-----APTKVQA-----QAIPVIL------SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVL 116 (316)
Q Consensus 53 ~~g~~-----~p~~~Q~-----~~i~~il------~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil 116 (316)
.+||. .|+++|+ ++||.++ .|+|+++++|||||||++|++|+++.+.. .+.++||+
T Consensus 205 ~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~--------~~~~~lil 276 (673)
T 2wv9_A 205 GNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ--------KRLRTAVL 276 (673)
T ss_dssp EEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH--------TTCCEEEE
T ss_pred eccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCcEEEE
Confidence 34666 8999999 9999988 89999999999999999999999988765 24669999
Q ss_pred eCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecch
Q 043110 117 VPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEAD 196 (316)
Q Consensus 117 ~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad 196 (316)
+||++||.|+++.++.+. .....+.... ....+.-+-+.+.+.+...+.. ...+.+++++||||||
T Consensus 277 aPTr~La~Q~~~~l~~~~-------i~~~~~~l~~-----v~tp~~ll~~l~~~~l~~~l~~--~~~l~~l~lvViDEaH 342 (673)
T 2wv9_A 277 APTRVVAAEMAEALRGLP-------VRYLTPAVQR-----EHSGNEIVDVMCHATLTHRLMS--PLRVPNYNLFVMDEAH 342 (673)
T ss_dssp ESSHHHHHHHHHHTTTSC-------CEECCC---C-----CCCSCCCEEEEEHHHHHHHHHS--SSCCCCCSEEEEESTT
T ss_pred ccHHHHHHHHHHHHhcCC-------eeeecccccc-----cCCHHHHHHHHHhhhhHHHHhc--ccccccceEEEEeCCc
Confidence 999999999998876431 1111110000 0000011223333444333332 1346789999999999
Q ss_pred hhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHH
Q 043110 197 RILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLT 250 (316)
Q Consensus 197 ~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~ 250 (316)
++ +..+...+..+...++. ..+|+++||||++..+..+.
T Consensus 343 ~~-~~~~~~~~~~l~~~~~~--------------~~~~vl~~SAT~~~~i~~~~ 381 (673)
T 2wv9_A 343 FT-DPASIAARGYIATRVEA--------------GEAAAIFMTATPPGTSDPFP 381 (673)
T ss_dssp CC-CHHHHHHHHHHHHHHHT--------------TSCEEEEECSSCTTCCCSSC
T ss_pred cc-CccHHHHHHHHHHhccc--------------cCCcEEEEcCCCChhhhhhc
Confidence 97 32233344444444431 17899999999998765443
No 67
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.80 E-value=9.2e-19 Score=174.50 Aligned_cols=197 Identities=17% Similarity=0.191 Sum_probs=130.4
Q ss_pred cCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhC-CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCee
Q 043110 34 SCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILS-GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTF 112 (316)
Q Consensus 34 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~-g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~ 112 (316)
...|+++++++.+.+.+..+ + ..|++.|+++|+.++. |+++++.||||||||+ ++|++...... ..+.+.+
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r-~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~----~~~~g~~ 142 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIR-R-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEM----PHLENTQ 142 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHH-T-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHC----GGGGTCE
T ss_pred CCCccccCCCHHHHHHHHHh-h-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcc----ccCCCce
Confidence 45799999999999999554 6 6799999999988775 5679999999999999 46665222110 0112567
Q ss_pred EEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEE
Q 043110 113 ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIF 192 (316)
Q Consensus 113 ~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lVi 192 (316)
++|++|+++|+.|+++.+...........++....... ......+|+++|||++...+... ..+.++++||+
T Consensus 143 ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~--~~l~~~~~lIl 214 (773)
T 2xau_A 143 VACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED--HDLSRYSCIIL 214 (773)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS--TTCTTEEEEEE
T ss_pred EEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC--ccccCCCEEEe
Confidence 99999999999999876655432111111111111100 01235789999999999877653 34679999999
Q ss_pred ecchh-hhcCCc-HHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEEEcCCC
Q 043110 193 DEADR-ILELGF-GKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLIGLDEK 265 (316)
Q Consensus 193 DEad~-l~~~~~-~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 265 (316)
||+|. .++..+ ...+..+....+ ..|++++|||++. ..+.. ++.++..+.+...
T Consensus 215 DEah~R~ld~d~~~~~l~~l~~~~~----------------~~~iIl~SAT~~~--~~l~~-~~~~~~vi~v~gr 270 (773)
T 2xau_A 215 DEAHERTLATDILMGLLKQVVKRRP----------------DLKIIIMSATLDA--EKFQR-YFNDAPLLAVPGR 270 (773)
T ss_dssp CSGGGCCHHHHHHHHHHHHHHHHCT----------------TCEEEEEESCSCC--HHHHH-HTTSCCEEECCCC
T ss_pred cCccccccchHHHHHHHHHHHHhCC----------------CceEEEEeccccH--HHHHH-HhcCCCcccccCc
Confidence 99995 555322 233334433322 6899999999964 44544 4444444554443
No 68
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.78 E-value=9.6e-20 Score=177.28 Aligned_cols=157 Identities=24% Similarity=0.219 Sum_probs=90.6
Q ss_pred CCcHHHHHHHHHHhC----C-CcEEEEcCCCCchHHHHHHHHHHHhhhcC-CCCCCCCCeeEEEEeCChHHHHHHH-HHH
Q 043110 58 APTKVQAQAIPVILS----G-RDVLVNAATGTGKTVAYLAPIINHLQSYS-PRIDRSSGTFALVLVPTSELCLLVY-EIL 130 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~----g-~d~li~a~TGsGKT~~~~lp~l~~l~~~~-~~~~~~~~~~~lil~Pt~~L~~Q~~-~~~ 130 (316)
.|+++|.++++.++. | ++++++++||+|||++++. ++..+.... .......+.++|||+|+++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~-~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ-ISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH-HHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 599999999998875 4 5699999999999999655 444443321 1111124667999999999999998 666
Q ss_pred HHHHhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCC---ccccCceeEEEEecchhhhcCCcHHHH
Q 043110 131 QKLLHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTS---SFLHTNLRWIIFDEADRILELGFGKEI 207 (316)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~---~~~~~~l~~lViDEad~l~~~~~~~~i 207 (316)
+.++. ....+.++ ....+.+|+|+||++|........ .+....+++||+||||++...+ ...+
T Consensus 257 ~~~~~-----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~ 322 (590)
T 3h1t_A 257 TPFGD-----ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNW 322 (590)
T ss_dssp TTTCS-----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------C
T ss_pred Hhcch-----hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHH
Confidence 65432 11222221 123467999999999988764221 2334578999999999987642 2456
Q ss_pred HHHHHHhccCcccccCCCCccccccceEEEEeeecchh
Q 043110 208 EEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNEK 245 (316)
Q Consensus 208 ~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~~ 245 (316)
..+++.++ ..+++++|||....
T Consensus 323 ~~il~~~~----------------~~~~l~lTATP~~~ 344 (590)
T 3h1t_A 323 REILEYFE----------------PAFQIGMTATPLRE 344 (590)
T ss_dssp HHHHHHST----------------TSEEEEEESSCSCT
T ss_pred HHHHHhCC----------------cceEEEeccccccc
Confidence 77777775 46899999997744
No 69
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.77 E-value=5.7e-20 Score=172.62 Aligned_cols=139 Identities=18% Similarity=0.172 Sum_probs=96.7
Q ss_pred HHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCC
Q 043110 69 VILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGG 148 (316)
Q Consensus 69 ~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~ 148 (316)
.+++|+|+++++|||||||++|++|+++.+.. .+.+++|++||++||.|+++.++.+. .....+.
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~--------~~~~~lil~Ptr~La~Q~~~~l~~~~-------v~~~~~~ 68 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR--------RRLRTLVLAPTRVVLSEMKEAFHGLD-------VKFHTQA 68 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTSC-------EEEESSC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh--------cCCeEEEEcchHHHHHHHHHHHhcCC-------eEEeccc
Confidence 35689999999999999999999999998765 24569999999999999998876321 1111111
Q ss_pred CChHHHHHHHhcCCcEEEeCcHHHHHHHhcC-------CccccCceeEEEEecchhhhcCCcHHHHHHHHHHhccCcccc
Q 043110 149 GNRSKEKARLRKGISILVATPGHLLDHLKHT-------SSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIAS 221 (316)
Q Consensus 149 ~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~-------~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~ 221 (316)
. -.|+||+++.+++... ....+.+++++|+||||++ +.++...+..+...+..
T Consensus 69 ~--------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~----- 128 (440)
T 1yks_A 69 F--------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARA----- 128 (440)
T ss_dssp C--------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHT-----
T ss_pred c--------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhcc-----
Confidence 0 0377776654433221 1223678999999999998 44444444444444431
Q ss_pred cCCCCccccccceEEEEeeecchhHHHHHH
Q 043110 222 IGEGNEVSNVKRQNLLLSATLNEKVNHLTK 251 (316)
Q Consensus 222 ~~~~~~~~~~~~q~i~~SAT~~~~v~~~~~ 251 (316)
.++|+++||||+++.+..+..
T Consensus 129 ---------~~~~~l~~SAT~~~~~~~~~~ 149 (440)
T 1yks_A 129 ---------NESATILMTATPPGTSDEFPH 149 (440)
T ss_dssp ---------TSCEEEEECSSCTTCCCSSCC
T ss_pred ---------CCceEEEEeCCCCchhhhhhh
Confidence 178999999999887654443
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.77 E-value=2.5e-18 Score=174.99 Aligned_cols=154 Identities=19% Similarity=0.124 Sum_probs=115.6
Q ss_pred CCcHHHHHHHHHHhC--------------CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHH
Q 043110 58 APTKVQAQAIPVILS--------------GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELC 123 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~--------------g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~ 123 (316)
.|+|+|..|++.++. +++.+++++||||||+++ ++++..+... ....++|||+|+++|+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~------~~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL------DFIDKVFFVVDRKDLD 343 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC------TTCCEEEEEECGGGCC
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc------CCCceEEEEeCcHHHH
Confidence 599999999999875 368999999999999997 6666555321 1235799999999999
Q ss_pred HHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHh-cCCcEEEeCcHHHHHHHhcCCc-cccCceeEEEEecchhhhcC
Q 043110 124 LLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLR-KGISILVATPGHLLDHLKHTSS-FLHTNLRWIIFDEADRILEL 201 (316)
Q Consensus 124 ~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~IlV~Tp~~l~~~l~~~~~-~~~~~l~~lViDEad~l~~~ 201 (316)
.|+.+.+..++.. .+.++.+.......+. .+++|+|+||++|..++..... ..+....++|+||||++..
T Consensus 344 ~Q~~~~f~~f~~~-------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~- 415 (1038)
T 2w00_A 344 YQTMKEYQRFSPD-------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF- 415 (1038)
T ss_dssp HHHHHHHHTTSTT-------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH-
T ss_pred HHHHHHHHHhccc-------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc-
Confidence 9999988876532 1234455555555554 4689999999999998765321 2345778999999999753
Q ss_pred CcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecch
Q 043110 202 GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLNE 244 (316)
Q Consensus 202 ~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~ 244 (316)
+.....|...++ +.++++||||+..
T Consensus 416 --~~~~~~I~~~~p----------------~a~~lgfTATP~~ 440 (1038)
T 2w00_A 416 --GEAQKNLKKKFK----------------RYYQFGFTGTPIF 440 (1038)
T ss_dssp --HHHHHHHHHHCS----------------SEEEEEEESSCCC
T ss_pred --hHHHHHHHHhCC----------------cccEEEEeCCccc
Confidence 344566777665 6799999999874
No 71
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.75 E-value=6.3e-19 Score=166.39 Aligned_cols=149 Identities=19% Similarity=0.180 Sum_probs=99.6
Q ss_pred HHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeC
Q 043110 68 PVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMG 147 (316)
Q Consensus 68 ~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~ 147 (316)
..+.+|+++++++|||||||++|++|+++.+.. .+.++||++||++|+.|+++.+..+ ......+
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g~-------~v~~~~~ 80 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ--------QRLRTAVLAPTRVVAAEMAEALRGL-------PVRYQTS 80 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEECSHHHHHHHHHHTTTS-------CEEECC-
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCCcEEEECchHHHHHHHHHHhcCc-------eEeEEec
Confidence 345678899999999999999999999988765 2456999999999999999887621 1111111
Q ss_pred CCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchh-----hhcCCcHHHHHHHHHHhccCccccc
Q 043110 148 GGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADR-----ILELGFGKEIEEILDILGSRNIASI 222 (316)
Q Consensus 148 ~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~-----l~~~~~~~~i~~i~~~l~~~~~~~~ 222 (316)
.... .-..+..+.++|.+.+...+... ..+.+++++||||||+ ++..+|...+. ...
T Consensus 81 ~~~~-----~~t~~~~i~~~~~~~l~~~l~~~--~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~------ 142 (459)
T 2z83_A 81 AVQR-----EHQGNEIVDVMCHATLTHRLMSP--NRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELG------ 142 (459)
T ss_dssp ------------CCCSEEEEEHHHHHHHHHSC--C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTT------
T ss_pred cccc-----CCCCCcEEEEEchHHHHHHhhcc--ccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccC------
Confidence 1110 01223457788888887766542 4467899999999998 44433322211 112
Q ss_pred CCCCccccccceEEEEeeecchhHHHHHHHhcCCCEEE
Q 043110 223 GEGNEVSNVKRQNLLLSATLNEKVNHLTKISLETPVLI 260 (316)
Q Consensus 223 ~~~~~~~~~~~q~i~~SAT~~~~v~~~~~~~l~~p~~i 260 (316)
..|+++||||++..+..+... ..|+..
T Consensus 143 ---------~~~~il~SAT~~~~~~~~~~~--~~pi~~ 169 (459)
T 2z83_A 143 ---------EAAAIFMTATPPGTTDPFPDS--NAPIHD 169 (459)
T ss_dssp ---------SCEEEEECSSCTTCCCSSCCC--SSCEEE
T ss_pred ---------CccEEEEEcCCCcchhhhccC--CCCeEE
Confidence 789999999999876544332 455543
No 72
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.74 E-value=5.2e-18 Score=158.86 Aligned_cols=140 Identities=15% Similarity=0.113 Sum_probs=95.3
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCCh
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNR 151 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (316)
+|+++++++|||||||++|++|+++.+.. .+.+++|++||++|+.|+++.+.. ..+.+..++...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~--------~g~~~lvl~Pt~~La~Q~~~~~~~-------~~v~~~~~~~~~ 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK--------KRLRTVILAPTRVVASEMYEALRG-------EPIRYMTPAVQS 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTT-------SCEEEC------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCCEEEECcHHHHHHHHHHHhCC-------CeEEEEecCccc
Confidence 47899999999999999999999976654 245699999999999999877651 222333332111
Q ss_pred HHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccc
Q 043110 152 SKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNV 231 (316)
Q Consensus 152 ~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~ 231 (316)
.-..+..+.+.|.+.+...+.. ...+.+++++|+||||++ +.++......+...... +
T Consensus 66 -----~~~~~~~~~~~~~~~l~~~l~~--~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~--------------~ 123 (431)
T 2v6i_A 66 -----ERTGNEIVDFMCHSTFTMKLLQ--GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSM--------------G 123 (431)
T ss_dssp --------CCCSEEEEEHHHHHHHHHH--TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHT--------------T
T ss_pred -----cCCCCceEEEEchHHHHHHHhc--CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhC--------------C
Confidence 1112345777888888766654 334678999999999996 43344444444444311 1
Q ss_pred cceEEEEeeecchhHHH
Q 043110 232 KRQNLLLSATLNEKVNH 248 (316)
Q Consensus 232 ~~q~i~~SAT~~~~v~~ 248 (316)
.+|+++||||+++.+..
T Consensus 124 ~~~~l~~SAT~~~~~~~ 140 (431)
T 2v6i_A 124 DAGAIFMTATPPGTTEA 140 (431)
T ss_dssp SCEEEEEESSCTTCCCS
T ss_pred CCcEEEEeCCCCcchhh
Confidence 78999999999975443
No 73
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.72 E-value=3.4e-17 Score=157.92 Aligned_cols=132 Identities=17% Similarity=0.091 Sum_probs=96.1
Q ss_pred CCCCCcHHHHHHHHH----HhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHH
Q 043110 55 GFEAPTKVQAQAIPV----ILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEIL 130 (316)
Q Consensus 55 g~~~p~~~Q~~~i~~----il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~ 130 (316)
|| +|+|.|.+++.. +..|++++++||||+|||++|++|++.. +.+++|++||++|+.|+.+.+
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~------------~~~v~i~~pt~~l~~q~~~~~ 67 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV------------KPKVLFVVRTHNEFYPIYRDL 67 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH------------CSEEEEEESSGGGHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC------------CCeEEEEcCCHHHHHHHHHHH
Confidence 45 489999987654 4589999999999999999999999871 456999999999999999888
Q ss_pred HHHHhhcCCceeEEeeCCCC---------------------------------hHHH------------------HHHHh
Q 043110 131 QKLLHRFRWIVPGYVMGGGN---------------------------------RSKE------------------KARLR 159 (316)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~------------------~~~l~ 159 (316)
..+....+ .....+.|+.+ .... .+...
T Consensus 68 ~~l~~~~~-~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~ 146 (551)
T 3crv_A 68 TKIREKRN-ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSL 146 (551)
T ss_dssp TTCCCSSC-CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHG
T ss_pred HHHhhhcC-ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhh
Confidence 87754332 33333333110 0111 12334
Q ss_pred cCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhc
Q 043110 160 KGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILE 200 (316)
Q Consensus 160 ~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~ 200 (316)
..++|||+|++.|++...........+..++||||||.|.+
T Consensus 147 ~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 147 YKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp GGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred hcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 56899999999999886443322224678999999999988
No 74
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.65 E-value=1.1e-16 Score=156.77 Aligned_cols=141 Identities=17% Similarity=0.065 Sum_probs=99.1
Q ss_pred HHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCC
Q 043110 69 VILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGG 148 (316)
Q Consensus 69 ~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~ 148 (316)
..+.|++++++||||||||+ ++++.+... ..++|++|||+||.|+++.++..+ ..+....|+
T Consensus 151 r~l~rk~vlv~apTGSGKT~----~al~~l~~~---------~~gl~l~PtR~LA~Qi~~~l~~~g-----~~v~lltG~ 212 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTY----HAIQKYFSA---------KSGVYCGPLKLLAHEIFEKSNAAG-----VPCDLVTGE 212 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHH----HHHHHHHHS---------SSEEEEESSHHHHHHHHHHHHHTT-----CCEEEECSS
T ss_pred HhcCCCEEEEEcCCCCCHHH----HHHHHHHhc---------CCeEEEeCHHHHHHHHHHHHHhcC-----CcEEEEECC
Confidence 34688999999999999998 344444442 126999999999999999987752 345556565
Q ss_pred CChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCcc
Q 043110 149 GNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEV 228 (316)
Q Consensus 149 ~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~ 228 (316)
...... .-....+++++|++.+. ....++++||||||++++.+|+..+..++..++..
T Consensus 213 ~~~iv~--TpGr~~~il~~T~e~~~---------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~----------- 270 (677)
T 3rc3_A 213 ERVTVQ--PNGKQASHVSCTVEMCS---------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAE----------- 270 (677)
T ss_dssp CEECCS--TTCCCCSEEEEEGGGCC---------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEE-----------
T ss_pred eeEEec--CCCcccceeEecHhHhh---------hcccCCEEEEecceecCCccchHHHHHHHHccCcc-----------
Confidence 433000 00011456677764331 23578999999999999999999999999888731
Q ss_pred ccccceEEEEeeecchhHHHHHHHh
Q 043110 229 SNVKRQNLLLSATLNEKVNHLTKIS 253 (316)
Q Consensus 229 ~~~~~q~i~~SAT~~~~v~~~~~~~ 253 (316)
..|++++|||.+ .+..+....
T Consensus 271 ---~i~il~~SAT~~-~i~~l~~~~ 291 (677)
T 3rc3_A 271 ---EVHLCGEPAAID-LVMELMYTT 291 (677)
T ss_dssp ---EEEEEECGGGHH-HHHHHHHHH
T ss_pred ---ceEEEeccchHH-HHHHHHHhc
Confidence 789999999953 455555443
No 75
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.62 E-value=1.7e-15 Score=144.28 Aligned_cols=149 Identities=19% Similarity=0.182 Sum_probs=102.4
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHH
Q 043110 58 APTKVQAQAIPVIL----SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL 133 (316)
Q Consensus 58 ~p~~~Q~~~i~~il----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 133 (316)
.|+|+|.++++.+. .++++++..+||+|||+.++..+ ..+... +...++||||| .+|+.|+.+.++++
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i-~~~~~~------~~~~~~LIv~P-~~l~~qw~~e~~~~ 108 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVF-SDAKKE------NELTPSLVICP-LSVLKNWEEELSKF 108 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHH-HHHHHT------TCCSSEEEEEC-STTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHH-HHHHhc------CCCCCEEEEcc-HHHHHHHHHHHHHH
Confidence 59999999998763 67899999999999999975544 444331 12345999999 56999999999887
Q ss_pred HhhcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHH
Q 043110 134 LHRFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDI 213 (316)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~ 213 (316)
+.. ..+....|+... .....++|+|+|++.+..... +....++++|+||||++...+. .....+..
T Consensus 109 ~~~---~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~ 174 (500)
T 1z63_A 109 APH---LRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKE 174 (500)
T ss_dssp CTT---SCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGGGSCTTS--HHHHHHHT
T ss_pred CCC---ceEEEEecCchh-----ccccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCccccCCHhH--HHHHHHHh
Confidence 632 333344444321 112357899999998865332 2224689999999999876432 23334443
Q ss_pred hccCcccccCCCCccccccceEEEEeeecch
Q 043110 214 LGSRNIASIGEGNEVSNVKRQNLLLSATLNE 244 (316)
Q Consensus 214 l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~~ 244 (316)
++ ..+.+++|||...
T Consensus 175 l~----------------~~~~l~LTaTP~~ 189 (500)
T 1z63_A 175 LK----------------SKYRIALTGTPIE 189 (500)
T ss_dssp SC----------------EEEEEEECSSCST
T ss_pred hc----------------cCcEEEEecCCCC
Confidence 43 4577999999843
No 76
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.61 E-value=7.3e-16 Score=148.22 Aligned_cols=129 Identities=24% Similarity=0.270 Sum_probs=85.2
Q ss_pred cCCCCCcHHHHHHHH----HHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHH
Q 043110 54 LGFEAPTKVQAQAIP----VILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEI 129 (316)
Q Consensus 54 ~g~~~p~~~Q~~~i~----~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~ 129 (316)
.|| +|+|+|.+++. .+..|++++++||||+|||++|++|++.. +.+++|++||++|+.|+.+.
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------------~~~~~~~~~t~~l~~q~~~~ 70 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------------KKKVLIFTRTHSQLDSIYKN 70 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------------TCEEEEEESCHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------------CCcEEEEcCCHHHHHHHHHH
Confidence 477 69999999864 45689999999999999999999998753 34599999999999999988
Q ss_pred HHHHHhhcCCceeEEeeCCCC--------hH------------------------HHH---------------HHHhcCC
Q 043110 130 LQKLLHRFRWIVPGYVMGGGN--------RS------------------------KEK---------------ARLRKGI 162 (316)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~--------~~------------------------~~~---------------~~l~~~~ 162 (316)
+..+. .....+.|... .. ..+ +.....+
T Consensus 71 ~~~l~-----~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~a 145 (540)
T 2vl7_A 71 AKLLG-----LKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDK 145 (540)
T ss_dssp HGGGT-----CCEEEC---------------------------------------------------------CTTGGGC
T ss_pred HHhcC-----CcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcC
Confidence 77632 11111111100 00 000 1112347
Q ss_pred cEEEeCcHHHHHHHhcCCcc------ccCceeEEEEecchhhhc
Q 043110 163 SILVATPGHLLDHLKHTSSF------LHTNLRWIIFDEADRILE 200 (316)
Q Consensus 163 ~IlV~Tp~~l~~~l~~~~~~------~~~~l~~lViDEad~l~~ 200 (316)
+|||+|++.|++........ .+.+..++|+||||.|.+
T Consensus 146 diVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~ 189 (540)
T 2vl7_A 146 DVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLE 189 (540)
T ss_dssp SEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGG
T ss_pred CEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHH
Confidence 99999999998855431111 235678999999999943
No 77
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.53 E-value=9.9e-15 Score=149.02 Aligned_cols=159 Identities=14% Similarity=0.100 Sum_probs=103.0
Q ss_pred CCcHHHHHHHHHHhC--CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHh
Q 043110 58 APTKVQAQAIPVILS--GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLH 135 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~--g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 135 (316)
.|+|+|.+++..++. +.++++.++||+|||+.++..+...+... ...++|||||+ +|+.|+.+.+.+.+
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g-------~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG-------AAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS-------SCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC-------CCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 689999999988875 44799999999999999977776665441 22359999999 99999998886654
Q ss_pred hcCCceeEEeeCCCChHHHHH---HHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcH-HHHHHHH
Q 043110 136 RFRWIVPGYVMGGGNRSKEKA---RLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFG-KEIEEIL 211 (316)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~---~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~-~~i~~i~ 211 (316)
+ .....+ ++........ ......+|+|+|++.+.........+...+++++|+||||++...+.. ......+
T Consensus 224 --~-l~v~v~-~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l 299 (968)
T 3dmq_A 224 --N-LRFALF-DDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAI 299 (968)
T ss_dssp --C-CCCEEC-CHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHH
T ss_pred --C-CCEEEE-ccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHH
Confidence 2 222222 2222111111 111246899999998854322111233357899999999998654321 1112233
Q ss_pred HHhccCcccccCCCCccccccceEEEEeeecc
Q 043110 212 DILGSRNIASIGEGNEVSNVKRQNLLLSATLN 243 (316)
Q Consensus 212 ~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~ 243 (316)
..+... ..+++++|||.-
T Consensus 300 ~~L~~~--------------~~~~L~LTATPi 317 (968)
T 3dmq_A 300 EQLAEH--------------VPGVLLLTATPE 317 (968)
T ss_dssp HHHHTT--------------CSSEEESCSSCS
T ss_pred HHHhhc--------------CCcEEEEEcCCc
Confidence 333211 457899999974
No 78
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.46 E-value=2.1e-12 Score=126.71 Aligned_cols=160 Identities=18% Similarity=0.239 Sum_probs=105.5
Q ss_pred CCcHHHHHHHHHHh---------CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHH
Q 043110 58 APTKVQAQAIPVIL---------SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYE 128 (316)
Q Consensus 58 ~p~~~Q~~~i~~il---------~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~ 128 (316)
.++|+|.+++..+. .+...++..+||.|||+.++..+...+.. .+. ......++|||+|+ +|+.|+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~-~~~-~~p~~~~~LiV~P~-sll~qW~~ 131 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQ-SPD-CKPEIDKVIVVSPS-SLVRNWYN 131 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHC-CTT-SSCSCSCEEEEECH-HHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHh-Ccc-ccCCCCcEEEEecH-HHHHHHHH
Confidence 58999999998874 45679999999999999986666555433 211 11123459999996 89999999
Q ss_pred HHHHHHhhcCCceeEEeeCCCChHH--HHHHHhc------CCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhc
Q 043110 129 ILQKLLHRFRWIVPGYVMGGGNRSK--EKARLRK------GISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILE 200 (316)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~------~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~ 200 (316)
.+.++... ........+|..... ....... ..+|+|+|++.+..... .+....++++|+||||++-.
T Consensus 132 E~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~---~l~~~~~~~vI~DEaH~ikn 206 (644)
T 1z3i_X 132 EVGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE---VLHKGKVGLVICDEGHRLKN 206 (644)
T ss_dssp HHHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT---TTTTSCCCEEEETTGGGCCT
T ss_pred HHHHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH---HhhcCCccEEEEECceecCC
Confidence 99998754 133334444433221 1112211 36899999998876442 22234678999999999865
Q ss_pred CCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeecc
Q 043110 201 LGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATLN 243 (316)
Q Consensus 201 ~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~~ 243 (316)
.. ......+..+. ....+++|||.-
T Consensus 207 ~~--~~~~~al~~l~----------------~~~rl~LTgTPi 231 (644)
T 1z3i_X 207 SD--NQTYLALNSMN----------------AQRRVLISGTPI 231 (644)
T ss_dssp TC--HHHHHHHHHHC----------------CSEEEEECSSCS
T ss_pred hh--hHHHHHHHhcc----------------cCcEEEEecCcc
Confidence 32 23334444454 456799999974
No 79
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.44 E-value=4.9e-13 Score=130.29 Aligned_cols=71 Identities=24% Similarity=0.216 Sum_probs=60.5
Q ss_pred CCcHHHHHHHH----HHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHH
Q 043110 58 APTKVQAQAIP----VILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL 133 (316)
Q Consensus 58 ~p~~~Q~~~i~----~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 133 (316)
+|+|.|.+.+. .+.+|++++++||||+|||++|++|++..+... +.+++|++||++|+.|+.+.+..+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--------~~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--------KLKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--------TCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--------CCeEEEECCCHHHHHHHHHHHHHH
Confidence 58999988875 456899999999999999999999999987652 456999999999999999999888
Q ss_pred Hhh
Q 043110 134 LHR 136 (316)
Q Consensus 134 ~~~ 136 (316)
...
T Consensus 75 ~~~ 77 (620)
T 4a15_A 75 SST 77 (620)
T ss_dssp HHH
T ss_pred hhc
Confidence 754
No 80
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.43 E-value=6.6e-13 Score=133.34 Aligned_cols=154 Identities=17% Similarity=0.171 Sum_probs=104.1
Q ss_pred CCcHHHHHHHHHHh----CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHH
Q 043110 58 APTKVQAQAIPVIL----SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL 133 (316)
Q Consensus 58 ~p~~~Q~~~i~~il----~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 133 (316)
.++|+|.+++..+. .+++.++..+||.|||+..+..+...+.... ....+||||| .+|+.|+.+.+.++
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~------~~~~~LIV~P-~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR------QNGPHIIVVP-LSTMPAWLDTFEKW 308 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS------CCSCEEEECC-TTTHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC------CCCCEEEEEC-chHHHHHHHHHHHH
Confidence 57899999998765 7889999999999999987665544443321 1223899999 78899999988887
Q ss_pred HhhcCCceeEEeeCCCChHHHHHHH------------hcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcC
Q 043110 134 LHRFRWIVPGYVMGGGNRSKEKARL------------RKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILEL 201 (316)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~l------------~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~ 201 (316)
+. ...+.+..|+.......... ...++|+|+|++.+...... +....+++||+||||++-..
T Consensus 309 ~p---~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~---l~~~~w~~vIvDEaH~lkn~ 382 (800)
T 3mwy_W 309 AP---DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE---LGSIKWQFMAVDEAHRLKNA 382 (800)
T ss_dssp ST---TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH---HHTSEEEEEEETTGGGGCCS
T ss_pred CC---CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH---HhcCCcceeehhhhhhhcCc
Confidence 63 34444444444433332221 12468999999998764322 11236789999999998543
Q ss_pred CcHHHHHHHHHHhccCcccccCCCCccccccceEEEEeeec
Q 043110 202 GFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSATL 242 (316)
Q Consensus 202 ~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SAT~ 242 (316)
+ ......+..+. ....+++|||.
T Consensus 383 ~--s~~~~~l~~l~----------------~~~rl~LTgTP 405 (800)
T 3mwy_W 383 E--SSLYESLNSFK----------------VANRMLITGTP 405 (800)
T ss_dssp S--SHHHHHHTTSE----------------EEEEEEECSCC
T ss_pred h--hHHHHHHHHhh----------------hccEEEeeCCc
Confidence 2 23333444443 45668899997
No 81
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.33 E-value=2.2e-11 Score=117.82 Aligned_cols=138 Identities=20% Similarity=0.201 Sum_probs=102.2
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHH
Q 043110 47 CDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLV 126 (316)
Q Consensus 47 ~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~ 126 (316)
.++-.+.+|+. |+++|....-.+..|+ ++.+.||+|||+++.+|++-.... |..+.|++|++.||.|-
T Consensus 65 REAa~R~lg~r-~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~---------G~~vhVvT~ndyLA~rd 132 (822)
T 3jux_A 65 REAARRTLGMR-PFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI---------GKGVHLVTVNDYLARRD 132 (822)
T ss_dssp HHHHHHHTSCC-CCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT---------SSCEEEEESSHHHHHHH
T ss_pred HHHHHHHhCCC-CcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc---------CCceEEEeccHHHHHhH
Confidence 33444567886 9999999988888887 999999999999999999755544 44499999999999999
Q ss_pred HHHHHHHHhhcCCceeEEeeCC--------------------------------------------------CChHHHHH
Q 043110 127 YEILQKLLHRFRWIVPGYVMGG--------------------------------------------------GNRSKEKA 156 (316)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~~ 156 (316)
++++..+...++ +.++++... .+. .+.+
T Consensus 133 ae~m~~l~~~Lg-lsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~err 210 (822)
T 3jux_A 133 ALWMGPVYLFLG-LRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKE-ITRK 210 (822)
T ss_dssp HHHHHHHHHHTT-CCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCB-CCHH
T ss_pred HHHHHHHHHHhC-CEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCH-HHHH
Confidence 999999998877 455555541 111 1222
Q ss_pred HHhcCCcEEEeCcHHH-HHHHhcC-----CccccCceeEEEEecchhhh
Q 043110 157 RLRKGISILVATPGHL-LDHLKHT-----SSFLHTNLRWIIFDEADRIL 199 (316)
Q Consensus 157 ~l~~~~~IlV~Tp~~l-~~~l~~~-----~~~~~~~l~~lViDEad~l~ 199 (316)
..+ .+||..||..-| +++++.. .......+.+.|+||+|.++
T Consensus 211 ~aY-~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiL 258 (822)
T 3jux_A 211 EAY-LCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVL 258 (822)
T ss_dssp HHH-HSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHH
T ss_pred HHh-cCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEeccccee
Confidence 333 379999999876 4555432 12234568899999999876
No 82
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.12 E-value=3.2e-10 Score=110.29 Aligned_cols=160 Identities=23% Similarity=0.305 Sum_probs=94.9
Q ss_pred CCHH-HHHHHHHHc-CCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchH--HHHHHHHHHHhhhcCCCCCCCCCeeEEEEe
Q 043110 42 LDST-LCDQLRERL-GFEAPTKVQAQAIPVILSGRDVLVNAATGTGKT--VAYLAPIINHLQSYSPRIDRSSGTFALVLV 117 (316)
Q Consensus 42 l~~~-l~~~l~~~~-g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT--~~~~lp~l~~l~~~~~~~~~~~~~~~lil~ 117 (316)
+++. +...| ..+ +-..-++.|+.+++.++.++++++.|++|+||| ++++++.+..+.. ..+.++++++
T Consensus 132 ~~~~~~~~~l-~~~~~~~~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-------~~~~~vll~A 203 (608)
T 1w36_D 132 VDEALLAQTL-DKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-------GERCRIRLAA 203 (608)
T ss_dssp CCHHHHHHHH-HTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-------SCCCCEEEEB
T ss_pred CCHHHHHHHH-HHHhccCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-------cCCCeEEEEe
Confidence 4443 44455 432 222237899999999999999999999999999 5677777665421 1345699999
Q ss_pred CChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhcCCc-EEEeCcHHHHHHHhcCCccccCceeEEEEecch
Q 043110 118 PTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRKGIS-ILVATPGHLLDHLKHTSSFLHTNLRWIIFDEAD 196 (316)
Q Consensus 118 Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad 196 (316)
||..++.++.+.+...+...+. ..... .+... + ....+ ++-.+|+.. . +....... ..++++|||||+
T Consensus 204 PTg~AA~~L~e~~~~~~~~l~l-~~~~~-~~~~~--~----~~Tih~ll~~~~~~~-~-~~~~~~~~-l~~d~lIIDEAs 272 (608)
T 1w36_D 204 PTGKAAARLTESLGKALRQLPL-TDEQK-KRIPE--D----ASTLHRLLGAQPGSQ-R-LRHHAGNP-LHLDVLVVDEAS 272 (608)
T ss_dssp SSHHHHHHHHHHHTHHHHHSSC-CSCCC-CSCSC--C----CBTTTSCC-------------CTTSC-CSCSEEEECSGG
T ss_pred CChhHHHHHHHHHHHHHhcCCC-CHHHH-hccch--h----hhhhHhhhccCCCch-H-HHhccCCC-CCCCEEEEechh
Confidence 9999999999888776654421 10000 00000 0 00111 222223221 1 11111112 268899999999
Q ss_pred hhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEe
Q 043110 197 RILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLS 239 (316)
Q Consensus 197 ~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~S 239 (316)
|++ ...+..++..++. ..|++++.
T Consensus 273 -ml~---~~~~~~Ll~~l~~---------------~~~liLvG 296 (608)
T 1w36_D 273 -MID---LPMMSRLIDALPD---------------HARVIFLG 296 (608)
T ss_dssp -GCB---HHHHHHHHHTCCT---------------TCEEEEEE
T ss_pred -hCC---HHHHHHHHHhCCC---------------CCEEEEEc
Confidence 555 4677888887765 67777764
No 83
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.28 E-value=6.1e-06 Score=77.42 Aligned_cols=70 Identities=24% Similarity=0.324 Sum_probs=50.8
Q ss_pred HcCCCCCcHHHHHHHHHHhCC----C-cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHH
Q 043110 53 RLGFEAPTKVQAQAIPVILSG----R-DVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVY 127 (316)
Q Consensus 53 ~~g~~~p~~~Q~~~i~~il~g----~-d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~ 127 (316)
-+.|..+++-|++++..++.. + .+++.|+.|+|||... ..++..+..... ..+++++||...+..+.
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~~-------~~il~~a~T~~Aa~~l~ 91 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTGE-------TGIILAAPTHAAKKILS 91 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTTC-------CCEEEEESSHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcCC-------ceEEEecCcHHHHHHHH
Confidence 467889999999999876532 3 8999999999999754 445555554211 24899999988876655
Q ss_pred HHH
Q 043110 128 EIL 130 (316)
Q Consensus 128 ~~~ 130 (316)
+.+
T Consensus 92 ~~~ 94 (459)
T 3upu_A 92 KLS 94 (459)
T ss_dssp HHH
T ss_pred hhh
Confidence 443
No 84
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.25 E-value=3.7e-06 Score=82.37 Aligned_cols=67 Identities=22% Similarity=0.294 Sum_probs=52.4
Q ss_pred CCcHHHHHHHHHHhCCCc-EEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHH
Q 043110 58 APTKVQAQAIPVILSGRD-VLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL 133 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g~d-~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 133 (316)
.+++-|.+|+..++..++ .+|+||.|+|||.+..-.+.+.+.. +.++|+++||..-+.++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~---------~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ---------GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT---------TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC---------CCeEEEEcCchHHHHHHHHHHHhc
Confidence 468999999999887776 7999999999998855444444332 445999999999998888777543
No 85
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.24 E-value=5e-06 Score=80.11 Aligned_cols=62 Identities=21% Similarity=0.231 Sum_probs=48.7
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHH
Q 043110 58 APTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYE 128 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~ 128 (316)
.+++.|++++..++.++.+++.|+.|+|||... ..++..+.. .+.++++++||...+..+.+
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~--------~g~~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES--------LGLEVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH--------TTCCEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh--------cCCeEEEecCcHHHHHHhHh
Confidence 478999999999999999999999999999763 334444443 24459999999988876654
No 86
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.18 E-value=2.7e-05 Score=75.93 Aligned_cols=69 Identities=25% Similarity=0.273 Sum_probs=53.6
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHH
Q 043110 57 EAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL 133 (316)
Q Consensus 57 ~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 133 (316)
..+++.|.+|+..++.+.-.++.||+|+|||.+.. .++..+... .+.++++++||...+.++.+.+...
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~-~~i~~l~~~-------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ-------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHH-HHHHHHHTS-------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHH-HHHHHHHHc-------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 35789999999998887789999999999998753 344444331 2345999999999999988877653
No 87
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.14 E-value=4.4e-05 Score=76.30 Aligned_cols=69 Identities=26% Similarity=0.301 Sum_probs=53.6
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHH
Q 043110 57 EAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL 133 (316)
Q Consensus 57 ~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 133 (316)
..+++.|.+|+..++.+.-+++.||.|+|||.+..- ++..+... .+.++|+++||...+.++.+.+...
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~-~i~~l~~~-------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLSKI-------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHH-HHHHHHHH-------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH-HHHHHHhC-------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 457899999999998877799999999999987543 33333321 1344999999999999998887764
No 88
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.03 E-value=6.4e-05 Score=75.11 Aligned_cols=68 Identities=25% Similarity=0.279 Sum_probs=53.1
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHH
Q 043110 58 APTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL 133 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 133 (316)
.+++.|.+|+..++.+.-.++.||+|+|||.+.. .++..+... .+.++++++||..-+.++.+.+...
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~-------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ-------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT-------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc-------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 4689999999998888789999999999998743 344444431 2345999999999998888777553
No 89
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.58 E-value=0.0006 Score=62.12 Aligned_cols=74 Identities=12% Similarity=0.103 Sum_probs=57.6
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhc
Q 043110 58 APTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRF 137 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 137 (316)
.++|+|...+..+...+-+++..+-+.|||.+....++..+.. ..+..+++++|+++.|..+.+.++.+....
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-------~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~ 235 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-------SSSCEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-------CCCCeEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 5899999999876555668999999999999865555544333 135569999999999998988888887654
Q ss_pred C
Q 043110 138 R 138 (316)
Q Consensus 138 ~ 138 (316)
+
T Consensus 236 P 236 (385)
T 2o0j_A 236 P 236 (385)
T ss_dssp C
T ss_pred h
Confidence 3
No 90
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.37 E-value=0.0065 Score=58.67 Aligned_cols=74 Identities=12% Similarity=0.103 Sum_probs=57.8
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhc
Q 043110 58 APTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRF 137 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~ 137 (316)
.|+|+|+..+..+...+-.++..+-|+|||.+...-++..+.. ..+..+++++|+++.|..+.+.++.+....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~-------~~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-------NKDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT-------SSSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh-------CCCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 4799999999877556779999999999999865544444433 124569999999999999998888887654
Q ss_pred C
Q 043110 138 R 138 (316)
Q Consensus 138 ~ 138 (316)
+
T Consensus 236 p 236 (592)
T 3cpe_A 236 P 236 (592)
T ss_dssp C
T ss_pred h
Confidence 3
No 91
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.11 E-value=0.0035 Score=50.42 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=16.7
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.|+.+++.||+|+|||...
T Consensus 37 ~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp GCCEEEECCSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4788999999999999764
No 92
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.07 E-value=0.0016 Score=63.38 Aligned_cols=71 Identities=18% Similarity=0.184 Sum_probs=53.7
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHH
Q 043110 57 EAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL 134 (316)
Q Consensus 57 ~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 134 (316)
..+++-|.+++.. .+..++|.|+.|||||.+.+--+...+..... ..-++|++++|+..+.++.+.+..+.
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~-----~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENC-----SPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCC-----CGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCC-----ChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 3689999999963 35679999999999998865545444433111 12359999999999999999888764
No 93
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=97.00 E-value=0.0011 Score=64.90 Aligned_cols=67 Identities=36% Similarity=0.438 Sum_probs=51.5
Q ss_pred CCCCCcHHHHHHHHHHh----CCC-cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHH
Q 043110 55 GFEAPTKVQAQAIPVIL----SGR-DVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEI 129 (316)
Q Consensus 55 g~~~p~~~Q~~~i~~il----~g~-d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~ 129 (316)
+| .|++.|..++..+. .|. ..++.+.||||||+++.- ++..... .+|||+|+..+|.|+++.
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~-~~~~~~~-----------~~lvv~~~~~~A~ql~~e 72 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAK-VIEALGR-----------PALVLAPNKILAAQLAAE 72 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHTC-----------CEEEEESSHHHHHHHHHH
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHH-HHHHhCC-----------CEEEEecCHHHHHHHHHH
Confidence 56 69999999987655 343 467889999999987532 3333211 199999999999999999
Q ss_pred HHHHH
Q 043110 130 LQKLL 134 (316)
Q Consensus 130 ~~~~~ 134 (316)
++.++
T Consensus 73 l~~~~ 77 (664)
T 1c4o_A 73 FRELF 77 (664)
T ss_dssp HHHHC
T ss_pred HHHHC
Confidence 99986
No 94
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.93 E-value=0.003 Score=58.39 Aligned_cols=97 Identities=19% Similarity=0.178 Sum_probs=55.7
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHH
Q 043110 75 DVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKE 154 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (316)
-.++.|+.|+|||... .+.+.. ...+|++||++++..+.+.+... +..
T Consensus 163 v~~I~G~aGsGKTt~I----~~~~~~----------~~~lVlTpT~~aa~~l~~kl~~~----~~~-------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEI----LSRVNF----------EEDLILVPGRQAAEMIRRRANAS----GII-------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHH----HHHCCT----------TTCEEEESCHHHHHHHHHHHTTT----SCC--------------
T ss_pred EEEEEcCCCCCHHHHH----HHHhcc----------CCeEEEeCCHHHHHHHHHHhhhc----Ccc--------------
Confidence 3789999999999874 222211 12799999999998777665321 000
Q ss_pred HHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhc
Q 043110 155 KARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 215 (316)
Q Consensus 155 ~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~ 215 (316)
...+.-|.|-+.++. +.........+++|||||-. ++. ..+..++...+
T Consensus 211 -----~~~~~~V~T~dsfL~---~~~~~~~~~~d~liiDE~sm-~~~---~~l~~l~~~~~ 259 (446)
T 3vkw_A 211 -----VATKDNVRTVDSFLM---NYGKGARCQFKRLFIDEGLM-LHT---GCVNFLVEMSL 259 (446)
T ss_dssp -----CCCTTTEEEHHHHHH---TTTSSCCCCCSEEEEETGGG-SCH---HHHHHHHHHTT
T ss_pred -----ccccceEEEeHHhhc---CCCCCCCCcCCEEEEeCccc-CCH---HHHHHHHHhCC
Confidence 011233556554432 21221112478999999984 343 33444555544
No 95
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.69 E-value=0.0019 Score=50.69 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=16.6
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.|..+++.+|+|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6788999999999999764
No 96
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.69 E-value=0.0054 Score=60.66 Aligned_cols=71 Identities=23% Similarity=0.183 Sum_probs=53.8
Q ss_pred CCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHH
Q 043110 57 EAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL 134 (316)
Q Consensus 57 ~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 134 (316)
..+++-|++++.. .+..++|.|+.|||||.+..--+...+..... ..-.+|+|+.|+..|.++.+++..+.
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~-----~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHV-----APWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCC-----CGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCC-----CHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 3689999999876 35689999999999999865545555443111 12349999999999999998888764
No 97
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.68 E-value=0.0024 Score=61.98 Aligned_cols=114 Identities=22% Similarity=0.271 Sum_probs=72.7
Q ss_pred CCcHHHHHHHHHHhC--CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHh
Q 043110 58 APTKVQAQAIPVILS--GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLH 135 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~--g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 135 (316)
.+|.-|.+++..+.. ....++.|+-|.|||.+.-+.+..... .++|.+|+.+-+..+.+. ..
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~~------------~~~vtAP~~~a~~~l~~~----~~ 238 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIAG------------RAIVTAPAKASTDVLAQF----AG 238 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSSS------------CEEEECSSCCSCHHHHHH----HG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHHh------------CcEEECCCHHHHHHHHHH----hh
Confidence 578999999988876 334799999999999765544433221 169999998876543332 21
Q ss_pred hcCCceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhcCCcHHHHHHHHHHhc
Q 043110 136 RFRWIVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELGFGKEIEEILDILG 215 (316)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~i~~~l~ 215 (316)
. .|-...|..+.. . ....++||||||=.+ -.+.+..++..
T Consensus 239 ~--------------------------~i~~~~Pd~~~~---~-----~~~~dlliVDEAAaI----p~pll~~ll~~-- 278 (671)
T 2zpa_A 239 E--------------------------KFRFIAPDALLA---S-----DEQADWLVVDEAAAI----PAPLLHQLVSR-- 278 (671)
T ss_dssp G--------------------------GCCBCCHHHHHH---S-----CCCCSEEEEETGGGS----CHHHHHHHHTT--
T ss_pred C--------------------------CeEEeCchhhhh---C-----cccCCEEEEEchhcC----CHHHHHHHHhh--
Confidence 1 022335554332 1 135789999999876 33555555542
Q ss_pred cCcccccCCCCccccccceEEEEeeecch
Q 043110 216 SRNIASIGEGNEVSNVKRQNLLLSATLNE 244 (316)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~q~i~~SAT~~~ 244 (316)
...++||.|+..
T Consensus 279 -----------------~~~v~~~tTv~G 290 (671)
T 2zpa_A 279 -----------------FPRTLLTTTVQG 290 (671)
T ss_dssp -----------------SSEEEEEEEBSS
T ss_pred -----------------CCeEEEEecCCc
Confidence 234788888753
No 98
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.67 E-value=0.0039 Score=61.14 Aligned_cols=70 Identities=20% Similarity=0.139 Sum_probs=53.2
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHH
Q 043110 58 APTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL 134 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 134 (316)
.+++-|++++.. .+..++|.|+.|||||.+.+--+...+..... ...++|+|+.|+..+.++.+.+....
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~-----~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-----QARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC-----CGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCC-----CHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 478999999975 36789999999999999865545554443211 12349999999999999999888764
No 99
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.58 E-value=0.0026 Score=53.45 Aligned_cols=91 Identities=18% Similarity=0.223 Sum_probs=50.6
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCCh
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNR 151 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (316)
.|.=.++.+++|+|||.+.+-- +..+.. .+.+++++.|...-- . ...+.... |...
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~-~~r~~~--------~g~kVli~~~~~d~r---~--~~~i~srl----------G~~~ 66 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRR-LHRLEY--------ADVKYLVFKPKIDTR---S--IRNIQSRT----------GTSL 66 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHH-HHHHHH--------TTCCEEEEEECCCGG---G--CSSCCCCC----------CCSS
T ss_pred CcEEEEEECCCCCcHHHHHHHH-HHHHHh--------cCCEEEEEEeccCch---H--HHHHHHhc----------CCCc
Confidence 4556888999999999875443 333332 244588888765310 0 00001110 1100
Q ss_pred HHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhh
Q 043110 152 SKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRI 198 (316)
Q Consensus 152 ~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l 198 (316)
..+-+.+...+++.+... ..-...++|||||++.+
T Consensus 67 ----------~~~~~~~~~~i~~~i~~~--~~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 ----------PSVEVESAPEILNYIMSN--SFNDETKVIGIDEVQFF 101 (223)
T ss_dssp ----------CCEEESSTHHHHHHHHST--TSCTTCCEEEECSGGGS
T ss_pred ----------cccccCCHHHHHHHHHHH--hhCCCCCEEEEecCccC
Confidence 123456666777766542 11235789999999974
No 100
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.48 E-value=0.024 Score=45.87 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=26.3
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCCh
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTS 120 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~ 120 (316)
.|+-.++.++.|+|||...+- ++..... .+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~-~~~~~~~--------~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLS-FVEIYKL--------GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHH-HHHHHHH--------TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHH-HHHHHHH--------CCCeEEEEeecc
Confidence 355678999999999987543 3333322 134588888884
No 101
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.40 E-value=0.029 Score=49.49 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
+..+++.||+|+|||...
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 457999999999999764
No 102
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.044 Score=48.46 Aligned_cols=28 Identities=11% Similarity=0.132 Sum_probs=20.1
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhh
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQS 100 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~ 100 (316)
.+.++++.||+|+|||.+.- .++..+..
T Consensus 44 ~~~~lli~GpPGTGKT~~v~-~v~~~L~~ 71 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVN-DVMDELIT 71 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHH-HHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH-HHHHHHHH
Confidence 34579999999999998753 34455543
No 103
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.36 E-value=0.0076 Score=63.19 Aligned_cols=73 Identities=26% Similarity=0.258 Sum_probs=55.6
Q ss_pred CCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHh
Q 043110 58 APTKVQAQAIPVILSGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLH 135 (316)
Q Consensus 58 ~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 135 (316)
.+|+-|.++|.. .+++++|.|..|||||.+.+--++..+...... ...-+++++++|+..+.++.+.+.....
T Consensus 10 ~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~---~~~~~il~~Tft~~aa~e~~~ri~~~l~ 82 (1232)
T 3u4q_A 10 TWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENP---IDVDRLLVVTFTNASAAEMKHRIAEALE 82 (1232)
T ss_dssp CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSC---CCGGGEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCC---CCccceEEEeccHHHHHHHHHHHHHHHH
Confidence 489999999976 388999999999999998665566655542110 1223599999999999999988877543
No 104
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.29 E-value=0.022 Score=46.54 Aligned_cols=40 Identities=15% Similarity=0.141 Sum_probs=26.8
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCCh
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTS 120 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~ 120 (316)
.|+=.++.+++|+|||.+.+- ++.+... .+.+++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~-~a~r~~~--------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIR-RIRRAKI--------AKQKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHH-HHHHHHH--------TTCCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHH-HHHHHHH--------CCCEEEEEEecc
Confidence 345578899999999987544 3333332 245599998884
No 105
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.09 E-value=0.017 Score=47.90 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=26.2
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChH
Q 043110 73 GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSE 121 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~ 121 (316)
|+=.++.++.|+|||...+--+...... +.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~---------g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFA---------KQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT---------TCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC---------CCEEEEEEeccC
Confidence 3446789999999998765444444332 445999998754
No 106
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.09 E-value=0.035 Score=48.85 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=19.7
Q ss_pred ceeEEEEecchhhhcCCcHHHHHHHHHHhc
Q 043110 186 NLRWIIFDEADRILELGFGKEIEEILDILG 215 (316)
Q Consensus 186 ~l~~lViDEad~l~~~~~~~~i~~i~~~l~ 215 (316)
..++++|||+|.+........+..+++..+
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~ 134 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYS 134 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCC
Confidence 678999999999862223445555555544
No 107
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=96.04 E-value=0.0012 Score=64.53 Aligned_cols=42 Identities=29% Similarity=0.304 Sum_probs=28.1
Q ss_pred eCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCCccccCceeEEEEecchhhhc
Q 043110 146 MGGGNRSKEKARLRKGISILVATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILE 200 (316)
Q Consensus 146 ~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~ 200 (316)
.|+.+..........+ +||++|++++... .++|+||+|++++
T Consensus 304 ~G~e~~~~~~~~~~~g-----~tpg~LlDyl~~~--------~llVlDEa~~~l~ 345 (661)
T 2d7d_A 304 SGIENYSRHLTLRPPG-----STPYTLLDYFPDD--------FMIVVDESHVTIP 345 (661)
T ss_dssp TTGGGGHHHHTTCCTT-----CCCBCGGGGSCSS--------CEEEEETHHHHHH
T ss_pred ccchhHHHHHccccCC-----CCccHHHHHcccC--------cEEEEecHHHHHH
Confidence 3444554444333333 8999999988542 2899999999874
No 108
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.02 E-value=0.018 Score=49.72 Aligned_cols=54 Identities=17% Similarity=0.294 Sum_probs=34.0
Q ss_pred ccCCcccCCCCHHHHHHHHHHcCCCCCcHHH-HHHHHHH--hCCCcEEEEcCCCCchHHHH
Q 043110 33 ASCCFSSLGLDSTLCDQLRERLGFEAPTKVQ-AQAIPVI--LSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q-~~~i~~i--l~g~d~li~a~TGsGKT~~~ 90 (316)
...+|+++.-.+..++.+.+... .+.+ ...+..+ ..++.+++.||+|+|||...
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVE----LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH----HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH----HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 34678889878888887744321 1111 1122221 34567999999999999764
No 109
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.01 E-value=0.025 Score=46.20 Aligned_cols=39 Identities=13% Similarity=0.108 Sum_probs=26.6
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCC
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 119 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt 119 (316)
.|+=.++.++.|+|||.-.+-.+-+.... +.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~---------~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA---------QYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT---------TCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc---------CCeEEEEccc
Confidence 45668999999999996544433333332 3449999887
No 110
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.01 E-value=0.015 Score=48.53 Aligned_cols=19 Identities=11% Similarity=0.155 Sum_probs=16.4
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.+..+++.||+|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999864
No 111
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.93 E-value=0.18 Score=40.82 Aligned_cols=17 Identities=35% Similarity=0.532 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCchHHHH
Q 043110 74 RDVLVNAATGTGKTVAY 90 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~ 90 (316)
..+++.||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35999999999999764
No 112
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.70 E-value=0.09 Score=48.67 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
+..+++.||+|+|||...
T Consensus 130 ~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp SCCEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 357999999999999864
No 113
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.66 E-value=0.33 Score=41.40 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCchHHHH
Q 043110 74 RDVLVNAATGTGKTVAY 90 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~ 90 (316)
..+++.||+|+|||...
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46999999999999875
No 114
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=95.57 E-value=0.019 Score=56.17 Aligned_cols=65 Identities=26% Similarity=0.401 Sum_probs=49.0
Q ss_pred CCcHHHHHHHHHHh----CCC-cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHH
Q 043110 58 APTKVQAQAIPVIL----SGR-DVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQK 132 (316)
Q Consensus 58 ~p~~~Q~~~i~~il----~g~-d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 132 (316)
.|+..|..++..+. .|. ...+.+.||||||++..- ++.... . .+|||+|+..+|.|+++.++.
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~-~~~~~~--~---------~~lvv~~~~~~A~~l~~el~~ 79 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSN-LIKEVN--K---------PTLVIAHNKTLAGQLYSEFKE 79 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHC--C---------CEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHH-HHHHhC--C---------CEEEEECCHHHHHHHHHHHHH
Confidence 58999988887654 343 467889999999986422 233221 1 199999999999999999999
Q ss_pred HH
Q 043110 133 LL 134 (316)
Q Consensus 133 ~~ 134 (316)
+.
T Consensus 80 ~~ 81 (661)
T 2d7d_A 80 FF 81 (661)
T ss_dssp HC
T ss_pred Hc
Confidence 85
No 115
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.46 E-value=0.11 Score=41.09 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
+..+++.||+|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 457999999999999764
No 116
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.44 E-value=0.054 Score=45.46 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=28.1
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChH
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSE 121 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~ 121 (316)
.|+=.++.++.|+|||...+--+...... |.+++++-|...
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~---------g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIA---------QYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTT---------TCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHC---------CCeEEEEeecCC
Confidence 45667889999999998755444443322 455899888753
No 117
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.43 E-value=0.2 Score=46.14 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=14.3
Q ss_pred cEEEEcCCCCchHHHHH
Q 043110 75 DVLVNAATGTGKTVAYL 91 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~ 91 (316)
-+++.+++|+|||....
T Consensus 99 vI~lvG~~GsGKTTt~~ 115 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAG 115 (433)
T ss_dssp EEEECCCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998753
No 118
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.40 E-value=0.13 Score=46.06 Aligned_cols=19 Identities=37% Similarity=0.461 Sum_probs=16.1
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.+..+++.||+|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3467999999999999864
No 119
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.26 E-value=0.083 Score=45.97 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
+.++++.||+|+|||...
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346999999999999875
No 120
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.24 E-value=0.24 Score=43.89 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=27.2
Q ss_pred CcHHHHHHHHHHh----CCC---cEEEEcCCCCchHHHHHHHHHHHhh
Q 043110 59 PTKVQAQAIPVIL----SGR---DVLVNAATGTGKTVAYLAPIINHLQ 99 (316)
Q Consensus 59 p~~~Q~~~i~~il----~g~---d~li~a~TGsGKT~~~~lp~l~~l~ 99 (316)
..|+|.+++..+. +|+ -+++.||.|+|||..... +...+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~-la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA-LSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH-HHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH-HHHHHh
Confidence 3577877765554 444 389999999999987543 444443
No 121
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.22 E-value=0.14 Score=45.41 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=28.8
Q ss_pred ccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 043110 33 ASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~ 90 (316)
...+|+++--.+.+.+.|.+.. ... -...++++.||+|+|||...
T Consensus 9 rP~~~~~~vg~~~~~~~l~~~~-~~~------------~~~~~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 9 RPKSLNALSHNEELTNFLKSLS-DQP------------RDLPHLLLYGPNGTGKKTRC 53 (354)
T ss_dssp CCCSGGGCCSCHHHHHHHHTTT-TCT------------TCCCCEEEECSTTSSHHHHH
T ss_pred CCCCHHHhcCCHHHHHHHHHHH-hhC------------CCCCeEEEECCCCCCHHHHH
Confidence 3455777766777777773221 010 12234999999999999864
No 122
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.15 E-value=0.14 Score=41.84 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=28.1
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEe
Q 043110 74 RDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV 117 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~ 117 (316)
..+++..++|.|||.+++--++..+.. |.+++|+.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~---------G~rV~~vQ 63 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH---------GKNVGVVQ 63 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT---------TCCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEE
Confidence 479999999999999987777776654 55688884
No 123
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.08 E-value=0.19 Score=40.68 Aligned_cols=24 Identities=29% Similarity=0.474 Sum_probs=17.9
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHh
Q 043110 74 RDVLVNAATGTGKTVAYLAPIINHL 98 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~lp~l~~l 98 (316)
+.+++.||+|+|||.... .+...+
T Consensus 55 ~~~~l~G~~GtGKT~la~-~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA-AIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHH-HHHHHH
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHH
Confidence 679999999999998643 334444
No 124
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.98 E-value=0.26 Score=40.96 Aligned_cols=50 Identities=24% Similarity=0.244 Sum_probs=30.0
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQ 131 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~ 131 (316)
.|.-+++.|++|+|||...+--+...... +..++++.-. +-..++.+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---------~~~v~~~~~e-~~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM---------GEPGIYVALE-EHPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT---------TCCEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc---------CCeEEEEEcc-CCHHHHHHHHH
Confidence 56678999999999998754333333221 2237777643 33455555544
No 125
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.94 E-value=0.19 Score=44.15 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=33.1
Q ss_pred ccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHh-----CCCcEEEEcCCCCchHHHH
Q 043110 33 ASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVIL-----SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il-----~g~d~li~a~TGsGKT~~~ 90 (316)
...+|+++.-...+++.|.+... .|.. .|.+. ..+.+++.||+|+|||...
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~----~~~~---~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI----LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH----HHHH---CGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH----HHHh---CHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 44579999888888888844321 1111 11111 2356999999999999865
No 126
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.86 E-value=0.038 Score=45.89 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=26.5
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChH
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSE 121 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~ 121 (316)
.|.=.++.++.|+|||...+-- +.+... .+.+++++.|...
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~-~~r~~~--------~g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRR-LRRGIY--------AKQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHH-HHHHHH--------TTCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHHH-HHHHHH--------cCCceEEEEeccC
Confidence 4556789999999999765433 343333 1344899988754
No 127
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.81 E-value=0.46 Score=38.87 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=14.2
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
.+++.||+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999764
No 128
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.58 E-value=0.11 Score=46.72 Aligned_cols=18 Identities=39% Similarity=0.309 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
++.+++.||+|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 346999999999999865
No 129
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.55 E-value=1.1 Score=39.39 Aligned_cols=50 Identities=16% Similarity=0.109 Sum_probs=29.3
Q ss_pred cccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 043110 32 FASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 32 ~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~ 90 (316)
+...+|+++--.+..++.+.... + .+...-....++++.||+|+|||...
T Consensus 23 ~~p~~~~~iiG~~~~~~~l~~~l--------~-~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 23 LRPSNFDGYIGQESIKKNLNVFI--------A-AAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCCCSGGGCCSCHHHHHHHHHHH--------H-HHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred cCCCCHHHhCChHHHHHHHHHHH--------H-HHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 44457887766666666552210 0 00000012347999999999999864
No 130
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.37 E-value=0.69 Score=41.02 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
+..+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999864
No 131
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.33 E-value=0.16 Score=41.83 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=16.3
Q ss_pred CCCcEEEEcCCCCchHHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~ 91 (316)
.|.-+++.+|+|+|||....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 45678999999999997643
No 132
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.25 E-value=0.43 Score=42.08 Aligned_cols=17 Identities=35% Similarity=0.491 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCchHHHH
Q 043110 74 RDVLVNAATGTGKTVAY 90 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~ 90 (316)
.++++.||+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45999999999999764
No 133
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.25 E-value=0.54 Score=39.47 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=29.2
Q ss_pred CCcccCCCCHHHHHHHHHHcC-CCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 043110 35 CCFSSLGLDSTLCDQLRERLG-FEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 35 ~~f~~~~l~~~l~~~l~~~~g-~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~ 90 (316)
.+|+++.-.+.+++.+.+-.. +..|..+.... +...+.+++.||+|+|||...
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g---~~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLG---AKVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcC---CCCCceEEEECCCCCCHHHHH
Confidence 467777766767666632110 11121111111 123457999999999999764
No 134
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.15 E-value=1.4 Score=40.51 Aligned_cols=51 Identities=25% Similarity=0.328 Sum_probs=29.4
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEe--CChHHHHHHHHHHHHHHhhc
Q 043110 75 DVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLV--PTSELCLLVYEILQKLLHRF 137 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~--Pt~~L~~Q~~~~~~~~~~~~ 137 (316)
-+++.+++|+|||....- +...+.. .|.+++++. |.|.-+ .+.++.++...
T Consensus 102 vIlivG~~G~GKTTt~~k-LA~~l~~--------~G~kVllv~~D~~R~aa---~eqL~~~~~~~ 154 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAK-LARYFQK--------RGYKVGVVCSDTWRPGA---YHQLRQLLDRY 154 (443)
T ss_dssp EEEEECCTTSSHHHHHHH-HHHHHHT--------TTCCEEEEECCCSSTHH---HHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHH-HHHHHHH--------CCCeEEEEeCCCcchhH---HHHHHHHHHhc
Confidence 478999999999987532 3333333 133465555 444433 44555555443
No 135
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.14 E-value=0.33 Score=42.23 Aligned_cols=16 Identities=38% Similarity=0.542 Sum_probs=14.5
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
++++.||+|+|||...
T Consensus 48 ~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAA 63 (327)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 6999999999999864
No 136
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.14 E-value=0.53 Score=43.42 Aligned_cols=116 Identities=15% Similarity=0.057 Sum_probs=55.6
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCCh
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNR 151 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (316)
.|.-+++.|++|+|||...+- +....... .+..++|+..-- -..|+..++........... ...|..+
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~-ia~~~a~~-------~g~~vl~~slE~-~~~~l~~R~~~~~~~i~~~~--l~~g~l~- 266 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALT-IAQNAALK-------EGVGVGIYSLEM-PAAQLTLRMMCSEARIDMNR--VRLGQLT- 266 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHH-HHHHHHHT-------TCCCEEEEESSS-CHHHHHHHHHHHHTTCCTTT--CCGGGCC-
T ss_pred CCcEEEEEeCCCCCHHHHHHH-HHHHHHHh-------CCCeEEEEECCC-CHHHHHHHHHHHHcCCCHHH--HhCCCCC-
Confidence 344589999999999975443 33333321 123377776532 23455554432222111111 1112222
Q ss_pred HHHHHHHh------cCCcEEEe-----CcHHHHHHHhcCCccccCceeEEEEecchhhhcC
Q 043110 152 SKEKARLR------KGISILVA-----TPGHLLDHLKHTSSFLHTNLRWIIFDEADRILEL 201 (316)
Q Consensus 152 ~~~~~~l~------~~~~IlV~-----Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~ 201 (316)
..++..+. ....+.+- |++.+...+.... .-..++++|||..+.+...
T Consensus 267 ~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~--~~~~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 267 DRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLV--SQNQVGLIIIDYLQLMSGP 325 (444)
T ss_dssp HHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHH--HHSCCCEEEEECGGGCBCC
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEEcChhhcCCC
Confidence 22222211 12345553 3344444333211 0125789999999998753
No 137
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.13 E-value=0.19 Score=45.02 Aligned_cols=16 Identities=38% Similarity=0.474 Sum_probs=14.6
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999864
No 138
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=94.04 E-value=0.014 Score=57.20 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=21.3
Q ss_pred eCcHHHHHHHhcCCccccCceeEEEEecchhhhcC
Q 043110 167 ATPGHLLDHLKHTSSFLHTNLRWIIFDEADRILEL 201 (316)
Q Consensus 167 ~Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~ 201 (316)
+||++|++++.. -.++|+||+|++.+.
T Consensus 314 ~tp~~LlDyl~~--------~~llVlDEah~~~~~ 340 (664)
T 1c4o_A 314 EPPYTLLDYFPE--------DFLVFLDESHVTVPQ 340 (664)
T ss_dssp SCCCCGGGGSCT--------TCEEEEETHHHHHHH
T ss_pred CCchHHHHHHhh--------ccEEEEecccccHHH
Confidence 789999888753 238999999998753
No 139
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.04 E-value=0.2 Score=45.60 Aligned_cols=55 Identities=18% Similarity=0.324 Sum_probs=35.2
Q ss_pred ccCCcccCCCCHHHHHHHHHHc--CCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 043110 33 ASCCFSSLGLDSTLCDQLRERL--GFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~--g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~ 90 (316)
...+|++.|=-++.++.|++.. .+.+|-.++...+ ...+.+++.||+|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHHH
Confidence 3468999987777777774432 1223333332221 23467999999999999874
No 140
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.02 E-value=0.28 Score=44.41 Aligned_cols=18 Identities=33% Similarity=0.525 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
.+.+++.||+|+|||...
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 468999999999999864
No 141
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.98 E-value=0.89 Score=42.05 Aligned_cols=130 Identities=15% Similarity=0.080 Sum_probs=61.6
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCCh
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNR 151 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (316)
.|.-+++.|++|+|||...+--+....... |..++|+..--. ..|+..++........... ...|...
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~--------g~~Vl~~s~E~s-~~~l~~r~~~~~~~~~~~~--l~~g~l~- 269 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKT--------NENVAIFSLEMS-AQQLVMRMLCAEGNINAQN--LRTGKLT- 269 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHS--------SCCEEEEESSSC-HHHHHHHHHHHHHTCCHHH--HHTSCCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhC--------CCcEEEEECCCC-HHHHHHHHHHHHcCCCHHH--HhcCCCC-
Confidence 455699999999999976543333332221 223777764322 3454544322111111000 0111122
Q ss_pred HHHHHHHh------cCCcEEEe-----CcHHHHHHHhcCCccccCceeEEEEecchhhhcCC-----cHHHHHHHHHHhc
Q 043110 152 SKEKARLR------KGISILVA-----TPGHLLDHLKHTSSFLHTNLRWIIFDEADRILELG-----FGKEIEEILDILG 215 (316)
Q Consensus 152 ~~~~~~l~------~~~~IlV~-----Tp~~l~~~l~~~~~~~~~~l~~lViDEad~l~~~~-----~~~~i~~i~~~l~ 215 (316)
..++..+. ...++.+. |++.+...+.... .-..++++|||+.+.+.... ....+..+.+.|.
T Consensus 270 ~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~--~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk 347 (454)
T 2r6a_A 270 PEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLK--QESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLK 347 (454)
T ss_dssp HHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHH--TTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHH
Confidence 22222211 12345554 3344444333211 11257899999999987532 3344555554443
No 142
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.64 E-value=0.75 Score=40.56 Aligned_cols=29 Identities=21% Similarity=0.418 Sum_probs=19.1
Q ss_pred ceeEEEEecchhhhcCCcHHHHHHHHHHhc
Q 043110 186 NLRWIIFDEADRILELGFGKEIEEILDILG 215 (316)
Q Consensus 186 ~l~~lViDEad~l~~~~~~~~i~~i~~~l~ 215 (316)
..+++|+||+|.|... ....+..+++..+
T Consensus 110 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~ 138 (340)
T 1sxj_C 110 GFKLIILDEADAMTNA-AQNALRRVIERYT 138 (340)
T ss_dssp SCEEEEETTGGGSCHH-HHHHHHHHHHHTT
T ss_pred CceEEEEeCCCCCCHH-HHHHHHHHHhcCC
Confidence 4789999999987542 3344555555543
No 143
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.54 E-value=0.4 Score=39.73 Aligned_cols=21 Identities=24% Similarity=0.126 Sum_probs=17.2
Q ss_pred CCCcEEEEcCCCCchHHHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAYLA 92 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~l 92 (316)
.|.-+.+.+|+|+|||.....
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHH
Confidence 456799999999999987544
No 144
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.40 E-value=0.26 Score=44.13 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=30.4
Q ss_pred ccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHh-----CCCcEEEEcCCCCchHHHH
Q 043110 33 ASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVIL-----SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il-----~g~d~li~a~TGsGKT~~~ 90 (316)
...+|++++-...+++.|.+... .|. -.|.+. ..+.+++.||+|+|||...
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~v~----~~~---~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEAVI----LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHHTH----HHH---HCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH----HHH---hCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 34678888766666666633211 010 011111 2356999999999999875
No 145
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.39 E-value=0.13 Score=47.81 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCchHHHH
Q 043110 74 RDVLVNAATGTGKTVAY 90 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~ 90 (316)
..+++.||+|+|||...
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 36999999999999864
No 146
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.31 E-value=0.25 Score=41.25 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=23.2
Q ss_pred ceeEEEEecchhhhc-----CCcHHHHHHHHHHhcc
Q 043110 186 NLRWIIFDEADRILE-----LGFGKEIEEILDILGS 216 (316)
Q Consensus 186 ~l~~lViDEad~l~~-----~~~~~~i~~i~~~l~~ 216 (316)
+.+++|+||.-.+++ ......+..++..+..
T Consensus 135 ~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~ 170 (251)
T 2ehv_A 135 NAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE 170 (251)
T ss_dssp TCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH
T ss_pred CCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 567899999998886 4455557777777754
No 147
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.97 E-value=0.56 Score=40.64 Aligned_cols=16 Identities=25% Similarity=0.563 Sum_probs=14.2
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
++++.||.|+|||...
T Consensus 44 ~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSV 59 (323)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 5999999999999764
No 148
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.58 E-value=0.65 Score=40.59 Aligned_cols=16 Identities=13% Similarity=0.077 Sum_probs=14.1
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
..++.||.|+|||...
T Consensus 20 ~~Lf~Gp~G~GKtt~a 35 (305)
T 2gno_A 20 SILINGEDLSYPREVS 35 (305)
T ss_dssp EEEEECSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999998765
No 149
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.24 E-value=0.43 Score=44.71 Aligned_cols=55 Identities=22% Similarity=0.340 Sum_probs=30.1
Q ss_pred ccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHH--hCCCcEEEEcCCCCchHHHH
Q 043110 33 ASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVI--LSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~i--l~g~d~li~a~TGsGKT~~~ 90 (316)
...+|++++=....++.|.+.... |... .+.+..+ ...+.+++.||+|+|||+..
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~--~l~~-~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVEL--PLRH-PALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHH--HHHC-HHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHH--HhhC-HHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 345677776555555555343211 1000 1112222 23457999999999999864
No 150
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.21 E-value=0.28 Score=53.38 Aligned_cols=47 Identities=23% Similarity=0.302 Sum_probs=32.4
Q ss_pred HHHHhC------CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHH
Q 043110 67 IPVILS------GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSEL 122 (316)
Q Consensus 67 i~~il~------g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L 122 (316)
+..++. |+.+++.+|+|+|||....--+.+.... |.+++++.....+
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~---------G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---------GKTCAFIDAEHAL 1467 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT---------TCCEEEECTTSCC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc---------CCcEEEEEccccc
Confidence 566665 6789999999999998865444443322 4458888766444
No 151
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.00 E-value=0.56 Score=40.47 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=17.2
Q ss_pred CCCcEEEEcCCCCchHHHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAYLA 92 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~l 92 (316)
.|.-+++.|++|+|||.....
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHH
Confidence 567799999999999976543
No 152
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.47 E-value=1.2 Score=39.45 Aligned_cols=115 Identities=13% Similarity=0.067 Sum_probs=55.8
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCCh
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNR 151 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (316)
.|.=+++.|++|+|||...+- +...+.. .+..++|++.- .-..|+..++........... +..|.-.
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~-ia~~~a~--------~g~~Vl~fSlE-ms~~ql~~Rlls~~~~v~~~~---l~~g~Ls 111 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMN-MVLSALN--------DDRGVAVFSLE-MSAEQLALRALSDLTSINMHD---LESGRLD 111 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHH-HHHHHHH--------TTCEEEEEESS-SCHHHHHHHHHHHHHCCCHHH---HHHTCCC
T ss_pred CCcEEEEEeCCCCCHHHHHHH-HHHHHHH--------cCCeEEEEeCC-CCHHHHHHHHHHHhhCCCHHH---HhcCCCC
Confidence 445599999999999976543 3333332 13447777653 334555555433322211100 1112222
Q ss_pred HHHHHHHh------cCCcEEE-eCc----HHHHHHHhcCCccccCceeEEEEecchhhhc
Q 043110 152 SKEKARLR------KGISILV-ATP----GHLLDHLKHTSSFLHTNLRWIIFDEADRILE 200 (316)
Q Consensus 152 ~~~~~~l~------~~~~IlV-~Tp----~~l~~~l~~~~~~~~~~l~~lViDEad~l~~ 200 (316)
..++..+. ...++.| .+| ..+...++.... ....++++|||-.+.|..
T Consensus 112 ~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~-~~gg~~lIVIDyLqlm~~ 170 (338)
T 4a1f_A 112 DDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKS-QHKELGIAFIDYLQLMSG 170 (338)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHH-HCTTEEEEEEEEEECCCT
T ss_pred HHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHH-hcCCCCEEEEechHHhcC
Confidence 22222221 1234544 444 334333332100 001689999999997754
No 153
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=91.28 E-value=1.3 Score=39.86 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=14.3
Q ss_pred CcEEE--EcCCCCchHHHH
Q 043110 74 RDVLV--NAATGTGKTVAY 90 (316)
Q Consensus 74 ~d~li--~a~TGsGKT~~~ 90 (316)
..+++ .|+.|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 35888 899999999864
No 154
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=91.13 E-value=0.46 Score=42.42 Aligned_cols=39 Identities=23% Similarity=0.335 Sum_probs=25.2
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCC
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPT 119 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt 119 (316)
.|.-+++.+++|+|||...+--+...... +..++|+.-.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~---------g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA---------GGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---------TCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---------CCeEEEEECC
Confidence 35669999999999998754433333322 3347777644
No 155
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.11 E-value=1.2 Score=38.85 Aligned_cols=52 Identities=17% Similarity=-0.050 Sum_probs=31.3
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKL 133 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 133 (316)
.|.-+++.|++|+|||...+--+.+.... +..++|++-- +-..|+..++...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~---------g~~vl~~slE-~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDN---------DDVVNLHSLE-MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTT---------TCEEEEEESS-SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHc---------CCeEEEEECC-CCHHHHHHHHHHH
Confidence 45569999999999997544333333222 2347777644 3455555555443
No 156
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=91.06 E-value=0.47 Score=45.07 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=16.5
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.|..+++.+|+|+|||...
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999764
No 157
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.76 E-value=0.21 Score=38.27 Aligned_cols=21 Identities=10% Similarity=0.077 Sum_probs=17.4
Q ss_pred HhCCCcEEEEcCCCCchHHHH
Q 043110 70 ILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 70 il~g~d~li~a~TGsGKT~~~ 90 (316)
...+.++++.+++|+|||..+
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 346678999999999999763
No 158
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=90.68 E-value=0.32 Score=39.13 Aligned_cols=59 Identities=14% Similarity=0.165 Sum_probs=43.0
Q ss_pred CcHHHHHHHHHHhCCC--cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHH
Q 043110 59 PTKVQAQAIPVILSGR--DVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLL 125 (316)
Q Consensus 59 p~~~Q~~~i~~il~g~--d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q 125 (316)
..+-|..++..++... -.++.++-|++|+...+-.++..... .|.++.+|+|+..-...
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~--------~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE--------QGREVQIIAADRRSQMN 95 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH--------TTCCEEEECSTTHHHHH
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh--------cCeEEEEEcCchHHHHH
Confidence 3577899998887544 37889999999999865555444433 35569999999876543
No 159
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.63 E-value=0.24 Score=37.92 Aligned_cols=20 Identities=25% Similarity=0.307 Sum_probs=17.2
Q ss_pred hCCCcEEEEcCCCCchHHHH
Q 043110 71 LSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 71 l~g~d~li~a~TGsGKT~~~ 90 (316)
..+.++++.+++|+|||..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 46678999999999999874
No 160
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=90.07 E-value=2.9 Score=36.92 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=14.0
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
.+++.||.|+|||...
T Consensus 40 ~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3799999999999865
No 161
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=90.04 E-value=0.94 Score=39.80 Aligned_cols=63 Identities=14% Similarity=0.064 Sum_probs=33.4
Q ss_pred HHHHHhC-----CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHH-HHHHHHHHH
Q 043110 66 AIPVILS-----GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSEL-CLLVYEILQ 131 (316)
Q Consensus 66 ~i~~il~-----g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L-~~Q~~~~~~ 131 (316)
.++.++. |.-+++.+++|+|||...+--+.+ ...... ..+.+..++|+.-...+ ..++.+.++
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~-~~~~~~--~gg~~~~vlyi~~e~~~~~~~l~~~~~ 163 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVN-VQLPPE--KGGLSGKAVYIDTEGTFRWERIENMAK 163 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH-TTSCGG--GTCCSCEEEEEESSSCCCHHHHHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHH-Hhcccc--cCCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3555553 456899999999999865433332 211000 00113457888754432 344444443
No 162
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.22 E-value=4 Score=37.03 Aligned_cols=19 Identities=21% Similarity=0.081 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 043110 73 GRDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~ 91 (316)
|.-+.+.+|+|+|||....
T Consensus 178 Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp TSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHH
Confidence 3468999999999998654
No 163
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=89.13 E-value=0.72 Score=41.28 Aligned_cols=41 Identities=27% Similarity=0.255 Sum_probs=26.3
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHH
Q 043110 73 GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSEL 122 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L 122 (316)
|.-+++.+|+|+|||... +.++..+.. .+..++++..-..+
T Consensus 61 G~i~~I~GppGsGKSTLa-l~la~~~~~--------~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLA-LHAIAEAQK--------MGGVAAFIDAEHAL 101 (356)
T ss_dssp TEEEEEEESTTSSHHHHH-HHHHHHHHH--------TTCCEEEEESSCCC
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHHHHh--------cCCeEEEEeccccc
Confidence 456899999999999754 444444333 13347888765443
No 164
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=88.89 E-value=0.81 Score=41.10 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=25.0
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCCh
Q 043110 73 GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTS 120 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~ 120 (316)
|.-+++.+++|+|||...+ .++..+... +..++|+..-.
T Consensus 74 G~li~I~G~pGsGKTtlal-~la~~~~~~--------g~~vlyi~~E~ 112 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLAL-AIVAQAQKA--------GGTCAFIDAEH 112 (366)
T ss_dssp TSEEEEEESTTSSHHHHHH-HHHHHHHHT--------TCCEEEEESSC
T ss_pred CcEEEEEcCCCCChHHHHH-HHHHHHHHC--------CCeEEEEECCC
Confidence 4568999999999997654 344333331 23477777543
No 165
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.48 E-value=0.22 Score=45.94 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=37.3
Q ss_pred ccCCcccCCCCHHHHHHHHHHc--CCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 043110 33 ASCCFSSLGLDSTLCDQLRERL--GFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~--g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~ 90 (316)
...+|++.+-.++.++.|.+.. .+.+|-.++...+ ...+.+++.||+|+|||+.+
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHH
Confidence 4468999998888888885432 2234444443322 12467999999999999874
No 166
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=88.27 E-value=0.34 Score=43.48 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=20.8
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 043110 66 AIPVILSGRD--VLVNAATGTGKTVAY 90 (316)
Q Consensus 66 ~i~~il~g~d--~li~a~TGsGKT~~~ 90 (316)
.+..++.|.| +++.++||||||...
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 4556678988 899999999999874
No 167
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=88.14 E-value=0.71 Score=40.66 Aligned_cols=42 Identities=7% Similarity=0.022 Sum_probs=27.8
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHH
Q 043110 75 DVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELC 123 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~ 123 (316)
-+.+.+|+|+|||...+-.+.+.... +.+.+++|+..-..+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~-------g~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ-------YPDAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH-------CTTCEEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc-------CCCceEEEEeccchhh
Confidence 58999999999998754433333322 1245689988766553
No 168
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=87.98 E-value=0.69 Score=42.38 Aligned_cols=26 Identities=42% Similarity=0.507 Sum_probs=19.4
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHh
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHL 98 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l 98 (316)
...++++.|+||||||... -+++..+
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~ 77 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTG 77 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHH
Confidence 4568999999999999974 3344443
No 169
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=87.87 E-value=2.6 Score=37.29 Aligned_cols=51 Identities=12% Similarity=-0.025 Sum_probs=28.7
Q ss_pred HHHHhC-----CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCCh
Q 043110 67 IPVILS-----GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTS 120 (316)
Q Consensus 67 i~~il~-----g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~ 120 (316)
+..++. |.-+++.+++|+|||...+--+...... ....+.+..++|+.-..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~---~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLP---GAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSC---BTTTBCCCEEEEEESSS
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc---cccCCCCCeEEEEECCC
Confidence 555553 3458999999999998654333221111 00011244688887554
No 170
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=87.54 E-value=0.43 Score=42.18 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=20.4
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 043110 66 AIPVILSGRD--VLVNAATGTGKTVAY 90 (316)
Q Consensus 66 ~i~~il~g~d--~li~a~TGsGKT~~~ 90 (316)
.+..++.|.| ++..++||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 3455678988 799999999999884
No 171
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=87.11 E-value=5.7 Score=31.72 Aligned_cols=71 Identities=15% Similarity=0.134 Sum_probs=47.7
Q ss_pred eEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHH---Hh-cCCcEEEeCcHHHHHHHhcCCccccCce
Q 043110 112 FALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKAR---LR-KGISILVATPGHLLDHLKHTSSFLHTNL 187 (316)
Q Consensus 112 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~-~~~~IlV~Tp~~l~~~l~~~~~~~~~~l 187 (316)
++||.+++++-+..+.+.+...+ ..+..++|+....+.... +. ...+|+|+|. .+. .++++.++
T Consensus 56 ~~lVF~~~~~~~~~l~~~L~~~g-----~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~--~Gldi~~v 123 (191)
T 2p6n_A 56 PVLIFAEKKADVDAIHEYLLLKG-----VEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VAS--KGLDFPAI 123 (191)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHT-----CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHH--TTCCCCCC
T ss_pred CEEEEECCHHHHHHHHHHHHHcC-----CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chh--cCCCcccC
Confidence 59999999999999988887642 445567777665443332 22 3578999992 222 45566778
Q ss_pred eEEEEec
Q 043110 188 RWIIFDE 194 (316)
Q Consensus 188 ~~lViDE 194 (316)
+++|.-+
T Consensus 124 ~~VI~~d 130 (191)
T 2p6n_A 124 QHVINYD 130 (191)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8777643
No 172
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=87.04 E-value=2.3 Score=37.05 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=19.5
Q ss_pred HHHHHhC-----CCcEEEEcCCCCchHHHHHH
Q 043110 66 AIPVILS-----GRDVLVNAATGTGKTVAYLA 92 (316)
Q Consensus 66 ~i~~il~-----g~d~li~a~TGsGKT~~~~l 92 (316)
.++.++. |.-+++.+++|+|||...+-
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~ 117 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQ 117 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHH
Confidence 3555553 34589999999999986543
No 173
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=86.75 E-value=0.43 Score=42.53 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=19.6
Q ss_pred HHHHhCCCc--EEEEcCCCCchHHHH
Q 043110 67 IPVILSGRD--VLVNAATGTGKTVAY 90 (316)
Q Consensus 67 i~~il~g~d--~li~a~TGsGKT~~~ 90 (316)
+..++.|.| ++..++||||||...
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 445568887 789999999999874
No 174
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=86.63 E-value=0.51 Score=42.13 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=19.7
Q ss_pred HHHHhCCCc--EEEEcCCCCchHHHH
Q 043110 67 IPVILSGRD--VLVNAATGTGKTVAY 90 (316)
Q Consensus 67 i~~il~g~d--~li~a~TGsGKT~~~ 90 (316)
+..++.|.| ++..|+||||||...
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 345568887 789999999999874
No 175
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=86.61 E-value=0.51 Score=42.40 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=19.9
Q ss_pred HHHHhCCCc--EEEEcCCCCchHHHH
Q 043110 67 IPVILSGRD--VLVNAATGTGKTVAY 90 (316)
Q Consensus 67 i~~il~g~d--~li~a~TGsGKT~~~ 90 (316)
+..++.|.| ++..|+||||||...
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceEE
Confidence 445668987 789999999999884
No 176
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=86.59 E-value=0.52 Score=42.20 Aligned_cols=24 Identities=42% Similarity=0.600 Sum_probs=19.9
Q ss_pred HHHHhCCCc--EEEEcCCCCchHHHH
Q 043110 67 IPVILSGRD--VLVNAATGTGKTVAY 90 (316)
Q Consensus 67 i~~il~g~d--~li~a~TGsGKT~~~ 90 (316)
+..++.|.| ++..++||||||...
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCceeee
Confidence 455668988 799999999999874
No 177
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=86.49 E-value=0.52 Score=42.19 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=19.9
Q ss_pred HHHHhCCCc--EEEEcCCCCchHHHH
Q 043110 67 IPVILSGRD--VLVNAATGTGKTVAY 90 (316)
Q Consensus 67 i~~il~g~d--~li~a~TGsGKT~~~ 90 (316)
+..++.|.| ++..|+||||||...
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 445678987 789999999999874
No 178
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=86.46 E-value=0.53 Score=41.96 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=20.3
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 043110 66 AIPVILSGRD--VLVNAATGTGKTVAY 90 (316)
Q Consensus 66 ~i~~il~g~d--~li~a~TGsGKT~~~ 90 (316)
.+..++.|.| ++..++||||||...
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 3455668988 789999999999874
No 179
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=86.40 E-value=0.54 Score=41.63 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=21.6
Q ss_pred HHHHHHhCCCc--EEEEcCCCCchHHHH
Q 043110 65 QAIPVILSGRD--VLVNAATGTGKTVAY 90 (316)
Q Consensus 65 ~~i~~il~g~d--~li~a~TGsGKT~~~ 90 (316)
..+..++.|.| ++..++||||||...
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35666789998 789999999999875
No 180
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=86.27 E-value=0.51 Score=42.48 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=20.3
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 043110 66 AIPVILSGRD--VLVNAATGTGKTVAY 90 (316)
Q Consensus 66 ~i~~il~g~d--~li~a~TGsGKT~~~ 90 (316)
.+..++.|.| ++..++||||||...
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 3455678987 789999999999874
No 181
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=86.26 E-value=0.54 Score=42.25 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=20.4
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 043110 66 AIPVILSGRD--VLVNAATGTGKTVAY 90 (316)
Q Consensus 66 ~i~~il~g~d--~li~a~TGsGKT~~~ 90 (316)
.+..++.|.| ++..|+||||||...
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 3455678988 789999999999874
No 182
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=86.20 E-value=0.54 Score=42.85 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=20.3
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 043110 66 AIPVILSGRD--VLVNAATGTGKTVAY 90 (316)
Q Consensus 66 ~i~~il~g~d--~li~a~TGsGKT~~~ 90 (316)
.+..++.|.| ++..|+||||||.+.
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 3455678887 789999999999884
No 183
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=86.18 E-value=1.9 Score=43.29 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCchHHHH
Q 043110 74 RDVLVNAATGTGKTVAY 90 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~ 90 (316)
.++++.||+|+|||...
T Consensus 192 ~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCEEEECTTSCHHHHH
T ss_pred CceEEEcCCCCCHHHHH
Confidence 47999999999999764
No 184
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=86.17 E-value=0.55 Score=42.77 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=21.4
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 043110 66 AIPVILSGRD--VLVNAATGTGKTVAY 90 (316)
Q Consensus 66 ~i~~il~g~d--~li~a~TGsGKT~~~ 90 (316)
.+..++.|.| ++..|+||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5667789998 789999999999885
No 185
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=86.11 E-value=0.53 Score=42.17 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=20.5
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 043110 66 AIPVILSGRD--VLVNAATGTGKTVAY 90 (316)
Q Consensus 66 ~i~~il~g~d--~li~a~TGsGKT~~~ 90 (316)
.+..++.|.| ++..++||||||...
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 4556678988 788999999999874
No 186
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=86.07 E-value=0.54 Score=42.05 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=20.6
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 043110 66 AIPVILSGRD--VLVNAATGTGKTVAY 90 (316)
Q Consensus 66 ~i~~il~g~d--~li~a~TGsGKT~~~ 90 (316)
.+..++.|.| ++..++||||||...
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 3455678988 789999999999885
No 187
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=86.03 E-value=1.2 Score=39.74 Aligned_cols=19 Identities=32% Similarity=0.518 Sum_probs=16.3
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.+..+++.+|+|+|||..+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4567999999999999865
No 188
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=85.94 E-value=0.57 Score=41.83 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=21.6
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 043110 66 AIPVILSGRD--VLVNAATGTGKTVAY 90 (316)
Q Consensus 66 ~i~~il~g~d--~li~a~TGsGKT~~~ 90 (316)
.+..++.|.| ++..++||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 5677789998 789999999999885
No 189
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=85.89 E-value=0.55 Score=41.90 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=20.4
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 043110 66 AIPVILSGRD--VLVNAATGTGKTVAY 90 (316)
Q Consensus 66 ~i~~il~g~d--~li~a~TGsGKT~~~ 90 (316)
.+..++.|.| ++..++||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 3455678987 789999999999885
No 190
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=85.88 E-value=0.53 Score=42.22 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=20.5
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 043110 66 AIPVILSGRD--VLVNAATGTGKTVAY 90 (316)
Q Consensus 66 ~i~~il~g~d--~li~a~TGsGKT~~~ 90 (316)
.+..++.|.| ++..++||||||...
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 4555678987 789999999999874
No 191
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=85.80 E-value=1.5 Score=38.17 Aligned_cols=26 Identities=15% Similarity=0.324 Sum_probs=19.1
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHhh
Q 043110 73 GRDVLVNAATGTGKTVAYLAPIINHLQ 99 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~lp~l~~l~ 99 (316)
++++++.||+|+|||.... .+...+.
T Consensus 152 ~~~lll~G~~GtGKT~La~-aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA-AMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH-HHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHHH
Confidence 5789999999999997653 3444443
No 192
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=85.65 E-value=0.58 Score=42.32 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=20.4
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 043110 66 AIPVILSGRD--VLVNAATGTGKTVAY 90 (316)
Q Consensus 66 ~i~~il~g~d--~li~a~TGsGKT~~~ 90 (316)
.+..++.|.| ++..++||||||...
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 3455678987 789999999999885
No 193
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=85.55 E-value=1.1 Score=42.01 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=26.1
Q ss_pred CCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 043110 55 GFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 55 g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~ 90 (316)
.+-.-...=..++-.+..+.++++.||+|+|||...
T Consensus 23 ~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 343334444555666778899999999999999763
No 194
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=85.39 E-value=1.3 Score=47.67 Aligned_cols=99 Identities=19% Similarity=0.215 Sum_probs=57.5
Q ss_pred HHHHHhC------CCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHHhhcCC
Q 043110 66 AIPVILS------GRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLLHRFRW 139 (316)
Q Consensus 66 ~i~~il~------g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~ 139 (316)
.++.++. |+-+.+.+|.|||||...+- ++....+ .|-.|+++.+-.+|.... +++++-...
T Consensus 1418 ~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~-~~a~~~~--------~g~~~~~i~~e~~~~~~~---~~~~Gv~~~- 1484 (1706)
T 3cmw_A 1418 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQ-VIAAAQR--------EGKTCAFIDAEHALDPIY---ARKLGVDID- 1484 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHH-HHHHHHH--------TTCCEEEECTTSCCCHHH---HHHTTCCGG-
T ss_pred HHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHH-HHHHHHh--------cCCeEEEEecCCCCCHHH---HHHcCCCHH-
Confidence 4555554 46699999999999987644 4433333 244599998887776443 444432221
Q ss_pred ceeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHHHHHhcCC-ccccCceeEEEEecchhhhc
Q 043110 140 IVPGYVMGGGNRSKEKARLRKGISILVATPGHLLDHLKHTS-SFLHTNLRWIIFDEADRILE 200 (316)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~~~l~~~~-~~~~~~l~~lViDEad~l~~ 200 (316)
+++|.-|+.-.+++.... .+.-..++.+|||.+..|..
T Consensus 1485 -----------------------~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1485 -----------------------NLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp -----------------------GCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred -----------------------HeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 255666643222221100 01113578999999988764
No 195
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=85.33 E-value=0.51 Score=42.43 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=21.0
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 043110 66 AIPVILSGRD--VLVNAATGTGKTVAY 90 (316)
Q Consensus 66 ~i~~il~g~d--~li~a~TGsGKT~~~ 90 (316)
.+..++.|.| ++..|+||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5566779988 788999999999874
No 196
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=85.27 E-value=0.58 Score=41.73 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=21.1
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 043110 66 AIPVILSGRD--VLVNAATGTGKTVAY 90 (316)
Q Consensus 66 ~i~~il~g~d--~li~a~TGsGKT~~~ 90 (316)
.+..++.|.| ++..++||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 5566778988 789999999999875
No 197
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=85.16 E-value=0.58 Score=42.74 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=21.4
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 043110 66 AIPVILSGRD--VLVNAATGTGKTVAY 90 (316)
Q Consensus 66 ~i~~il~g~d--~li~a~TGsGKT~~~ 90 (316)
.+..++.|.| ++..|+||||||...
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 5667789998 799999999999874
No 198
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=85.11 E-value=0.17 Score=43.49 Aligned_cols=54 Identities=17% Similarity=0.297 Sum_probs=28.8
Q ss_pred ccCCcccCCCCHHHHHHHHHHcCCCCCcHHH-HHHHHHHh--CCCcEEEEcCCCCchHHHH
Q 043110 33 ASCCFSSLGLDSTLCDQLRERLGFEAPTKVQ-AQAIPVIL--SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q-~~~i~~il--~g~d~li~a~TGsGKT~~~ 90 (316)
...+|++++-.+++++.|.+.. ..|+. ..++..+- -.+.+++.+|+|+|||...
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i----~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAI----LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -------CCHHHHHHHHHHHHH----THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH----HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 3467999988888888884432 12222 22232221 1234999999999999764
No 199
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=85.10 E-value=3.6 Score=31.76 Aligned_cols=72 Identities=17% Similarity=0.101 Sum_probs=48.1
Q ss_pred eEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHH---HHh-cCCcEEEeCcHHHHHHHhcCCccccCce
Q 043110 112 FALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA---RLR-KGISILVATPGHLLDHLKHTSSFLHTNL 187 (316)
Q Consensus 112 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~-~~~~IlV~Tp~~l~~~l~~~~~~~~~~l 187 (316)
++||.++++.-+..+.+.+... ...+..++|+....+... .+. ...+|+|+|.- +. .++++.++
T Consensus 37 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~--~Gld~~~~ 104 (163)
T 2hjv_A 37 SCIIFCRTKEHVNQLTDELDDL-----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDV-----AA--RGIDIENI 104 (163)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG-----GT--TTCCCSCC
T ss_pred cEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCh-----hh--cCCchhcC
Confidence 4999999999999988887764 245566777766544332 233 34689999931 11 45666778
Q ss_pred eEEEEecc
Q 043110 188 RWIIFDEA 195 (316)
Q Consensus 188 ~~lViDEa 195 (316)
+++|.-+.
T Consensus 105 ~~Vi~~~~ 112 (163)
T 2hjv_A 105 SLVINYDL 112 (163)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 88876443
No 200
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=85.10 E-value=0.57 Score=42.21 Aligned_cols=25 Identities=40% Similarity=0.562 Sum_probs=20.1
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 043110 66 AIPVILSGRD--VLVNAATGTGKTVAY 90 (316)
Q Consensus 66 ~i~~il~g~d--~li~a~TGsGKT~~~ 90 (316)
.+..++.|.| ++..++||||||...
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCcceec
Confidence 3445668887 799999999999874
No 201
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=84.80 E-value=2.3 Score=36.29 Aligned_cols=44 Identities=18% Similarity=0.161 Sum_probs=31.4
Q ss_pred HHHHHHHHHHcCCCCCcHHH-HHHHHHHhCCC-----cEEEEcCCCCchHHHHH
Q 043110 44 STLCDQLRERLGFEAPTKVQ-AQAIPVILSGR-----DVLVNAATGTGKTVAYL 91 (316)
Q Consensus 44 ~~l~~~l~~~~g~~~p~~~Q-~~~i~~il~g~-----d~li~a~TGsGKT~~~~ 91 (316)
..+.+.| +..|++ +++ ..++..++.|+ .+++.||.|+|||+.+.
T Consensus 73 n~i~~~l-~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKIL-ELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHH-HHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHH-HHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 3677777 556776 566 34456666654 39999999999998764
No 202
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=84.70 E-value=0.7 Score=42.64 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=19.9
Q ss_pred HHHHhCCCc--EEEEcCCCCchHHHH
Q 043110 67 IPVILSGRD--VLVNAATGTGKTVAY 90 (316)
Q Consensus 67 i~~il~g~d--~li~a~TGsGKT~~~ 90 (316)
+..++.|.| ++..|+||||||...
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 445568988 799999999999875
No 203
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=84.68 E-value=1.8 Score=40.36 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=37.7
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQKLL 134 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 134 (316)
.|....+.+-||||||++.. .++. ... ..+|||+|+...|.|+++.++.+.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a-~l~~---~~~--------~p~lvv~~~~~~A~~l~~~l~~~~ 63 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVA-EIAE---RHA--------GPVVLIAPDMQNALRLHDEISQFT 63 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHH-HHHH---HSS--------SCEEEEESSHHHHHHHHHHHHHTC
T ss_pred CCCeEEEeCCCchHHHHHHH-HHHH---HhC--------CCEEEEeCCHHHHHHHHHHHHhhC
Confidence 45668999999999997632 1222 211 128999999999999999998875
No 204
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=84.67 E-value=0.56 Score=42.47 Aligned_cols=23 Identities=39% Similarity=0.605 Sum_probs=19.0
Q ss_pred HHHhCCCc--EEEEcCCCCchHHHH
Q 043110 68 PVILSGRD--VLVNAATGTGKTVAY 90 (316)
Q Consensus 68 ~~il~g~d--~li~a~TGsGKT~~~ 90 (316)
..++.|.| ++..|+||||||...
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 34568887 789999999999875
No 205
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=84.61 E-value=2.1 Score=44.59 Aligned_cols=61 Identities=21% Similarity=0.174 Sum_probs=43.0
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHhhhcCCC---CCCCCCeeEEEEeCChHHHHHHHHHHHHHHh
Q 043110 75 DVLVNAATGTGKTVAYLAPIINHLQSYSPR---IDRSSGTFALVLVPTSELCLLVYEILQKLLH 135 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~lp~l~~l~~~~~~---~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 135 (316)
..+|.|..|||||.+..--++..+...... .....--++|+|+=|+.-+.++.+++.....
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 459999999999998766667766532100 0001123599999999999999988877654
No 206
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=84.30 E-value=1.1 Score=40.29 Aligned_cols=31 Identities=10% Similarity=-0.007 Sum_probs=23.3
Q ss_pred eeEEEEecchhhhcC---CcHHHHHHHHHHhccC
Q 043110 187 LRWIIFDEADRILEL---GFGKEIEEILDILGSR 217 (316)
Q Consensus 187 l~~lViDEad~l~~~---~~~~~i~~i~~~l~~~ 217 (316)
-.++|+||||.++.. .+...+..+++..++.
T Consensus 263 ~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~ 296 (392)
T 4ag6_A 263 RTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKY 296 (392)
T ss_dssp TCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGG
T ss_pred cEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhh
Confidence 468999999999963 3556777888777653
No 207
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=83.96 E-value=0.64 Score=41.93 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=20.7
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 043110 66 AIPVILSGRD--VLVNAATGTGKTVAY 90 (316)
Q Consensus 66 ~i~~il~g~d--~li~a~TGsGKT~~~ 90 (316)
.+..++.|.| ++..++||||||...
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 4556678987 789999999999874
No 208
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=83.49 E-value=0.56 Score=40.73 Aligned_cols=56 Identities=18% Similarity=0.329 Sum_probs=32.8
Q ss_pred ccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHH-HhCCCcEEEEcCCCCchHHHH
Q 043110 33 ASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPV-ILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~-il~g~d~li~a~TGsGKT~~~ 90 (316)
...+|++++-.+.+++.|.+...+ |.......... +..++.+++.||+|+|||...
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~--~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQY--PVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHH--HHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH--HhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 345788888777777777432110 10000110111 234567999999999999864
No 209
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=83.40 E-value=1.4 Score=36.44 Aligned_cols=52 Identities=25% Similarity=0.279 Sum_probs=30.1
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQK 132 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 132 (316)
.|.-+++.|++|+|||...+--+.+..... +..++|++-. +-..++.+.+..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--------~~~v~~~s~E-~~~~~~~~~~~~ 80 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY--------GEPGVFVTLE-ERARDLRREMAS 80 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH--------CCCEEEEESS-SCHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhc--------CCCceeeccc-CCHHHHHHHHHH
Confidence 345699999999999976543333333332 2227777643 334555555443
No 210
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=83.37 E-value=9 Score=29.80 Aligned_cols=72 Identities=8% Similarity=-0.047 Sum_probs=48.8
Q ss_pred CeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHH---Hh-cCCcEEEeCcHHHHHHHhcCCccccC
Q 043110 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKAR---LR-KGISILVATPGHLLDHLKHTSSFLHT 185 (316)
Q Consensus 110 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~-~~~~IlV~Tp~~l~~~l~~~~~~~~~ 185 (316)
+.++||.++++..+..+++.+... ...+..++|+......... +. ...+|+|+|.- -..++++.
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~-------~~~Gid~~ 101 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD-----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV-------CARGIDVK 101 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT-----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS-------CCTTTCCT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc-------hhcCCCcc
Confidence 346999999999999888877653 2455667777665544332 33 34789999931 12456677
Q ss_pred ceeEEEEe
Q 043110 186 NLRWIIFD 193 (316)
Q Consensus 186 ~l~~lViD 193 (316)
.++++|.-
T Consensus 102 ~~~~Vi~~ 109 (175)
T 2rb4_A 102 QVTIVVNF 109 (175)
T ss_dssp TEEEEEES
T ss_pred cCCEEEEe
Confidence 88888853
No 211
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=83.34 E-value=21 Score=30.68 Aligned_cols=17 Identities=29% Similarity=0.180 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCchHHHH
Q 043110 74 RDVLVNAATGTGKTVAY 90 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~ 90 (316)
..+++.|+.|+|||...
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999763
No 212
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=83.16 E-value=1.5 Score=38.41 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=31.9
Q ss_pred cCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHh-----CCCcEEEEcCCCCchHHHH
Q 043110 34 SCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVIL-----SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 34 ~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il-----~g~d~li~a~TGsGKT~~~ 90 (316)
..+|++++=...+++.|.+... .|.+ .|.+. ..+.+++.||+|+|||...
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~----~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVI----LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH----HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH----HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 4579999877887777743211 0111 11222 2357999999999999864
No 213
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=83.09 E-value=1.3 Score=34.66 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
+..+++.||+|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 457999999999999864
No 214
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=82.76 E-value=16 Score=31.44 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
++-+.+.+++|+|||...
T Consensus 98 ~~~i~i~g~~G~GKTT~~ 115 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTA 115 (295)
T ss_dssp SEEEEEECCTTTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345677899999999764
No 215
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=82.27 E-value=2.3 Score=34.89 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHhCC----CcEEEEcCCCCchHHHHHHHHHHH
Q 043110 44 STLCDQLRERLGFEAPTKVQAQAIPVILSG----RDVLVNAATGTGKTVAYLAPIINH 97 (316)
Q Consensus 44 ~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g----~d~li~a~TGsGKT~~~~lp~l~~ 97 (316)
..+.+.| +-.|++ +-.+ ...+..++.+ ..+++.+|.|+|||..+ ..++..
T Consensus 28 ~~I~~~l-~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~ 81 (212)
T 1tue_A 28 RPIVQFL-RYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHF 81 (212)
T ss_dssp HHHHHHH-HHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHH
T ss_pred HHHHHHH-HHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHH
Confidence 4667777 333443 4444 4555555554 24999999999999765 334443
No 216
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=82.03 E-value=1.6 Score=35.69 Aligned_cols=32 Identities=25% Similarity=0.154 Sum_probs=26.4
Q ss_pred CcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 043110 59 PTKVQAQAIPVILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 59 p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~ 90 (316)
-+.-|..++..+..|.-+.+.+|+|+|||...
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 34456778888888988999999999999864
No 217
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.00 E-value=0.64 Score=43.03 Aligned_cols=54 Identities=24% Similarity=0.390 Sum_probs=34.9
Q ss_pred cCCcccCCCCHHHHHHHHHHcC--CCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 043110 34 SCCFSSLGLDSTLCDQLRERLG--FEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 34 ~~~f~~~~l~~~l~~~l~~~~g--~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~ 90 (316)
.-+|++.+=.+++++.|.+..- +.+|-.++..- +...+.+++.||+|+|||+.+
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHH
Confidence 3689999988888888855321 22222222211 123467999999999999864
No 218
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=81.88 E-value=2.4 Score=36.28 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
+..+++.||+|+|||...
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 568999999999999764
No 219
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=81.85 E-value=1.3 Score=37.33 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=16.4
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.+..+++.|++|+|||...
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 5678999999999999764
No 220
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=81.63 E-value=0.79 Score=36.37 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=16.3
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.|+-+++.||+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677899999999999864
No 221
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=81.55 E-value=13 Score=28.58 Aligned_cols=72 Identities=14% Similarity=0.086 Sum_probs=47.7
Q ss_pred eeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHH---HHh-cCCcEEEeCcHHHHHHHhcCCccccCc
Q 043110 111 TFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA---RLR-KGISILVATPGHLLDHLKHTSSFLHTN 186 (316)
Q Consensus 111 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~-~~~~IlV~Tp~~l~~~l~~~~~~~~~~ 186 (316)
.++||.+++++-+..+.+.+... ...+..++|+........ .+. ...+|+|+|.- +. .++++.+
T Consensus 31 ~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~--~G~d~~~ 98 (165)
T 1fuk_A 31 TQAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL-----LA--RGIDVQQ 98 (165)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGG-----GT--TTCCCCS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCh-----hh--cCCCccc
Confidence 35999999999999888887663 244556777766544332 222 34789999931 11 4556677
Q ss_pred eeEEEEec
Q 043110 187 LRWIIFDE 194 (316)
Q Consensus 187 l~~lViDE 194 (316)
++++|.-+
T Consensus 99 ~~~Vi~~~ 106 (165)
T 1fuk_A 99 VSLVINYD 106 (165)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 88877644
No 222
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.40 E-value=0.67 Score=42.67 Aligned_cols=55 Identities=27% Similarity=0.376 Sum_probs=34.2
Q ss_pred ccCCcccCCCCHHHHHHHHHHcC--CCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 043110 33 ASCCFSSLGLDSTLCDQLRERLG--FEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~g--~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~ 90 (316)
...+|++.+=.++.++.|.+..- +.+|--++...+ ...+-+++.||+|+|||+.+
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHHH
Confidence 34579999877777777744321 222322222211 13367999999999999874
No 223
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=81.30 E-value=0.83 Score=43.03 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=18.0
Q ss_pred HHhCCCcEEEEcCCCCchHHH
Q 043110 69 VILSGRDVLVNAATGTGKTVA 89 (316)
Q Consensus 69 ~il~g~d~li~a~TGsGKT~~ 89 (316)
.+..|..+++.||||||||..
T Consensus 256 ~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 256 AIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHTTCCEEEEESTTSSHHHH
T ss_pred HHhCCCEEEEECCCCCCHHHH
Confidence 345788999999999999976
No 224
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=81.04 E-value=0.84 Score=39.99 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=20.2
Q ss_pred HHHHHHhCCCcEEEEcCCCCchHHHH
Q 043110 65 QAIPVILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 65 ~~i~~il~g~d~li~a~TGsGKT~~~ 90 (316)
.+.-.+..+.++++.||+|+|||...
T Consensus 38 ~l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 38 RLLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHHHcCCeEEEECCCCCcHHHHH
Confidence 33344556889999999999999764
No 225
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=80.65 E-value=2 Score=36.01 Aligned_cols=55 Identities=20% Similarity=0.255 Sum_probs=30.8
Q ss_pred ccCCcccCCCCHHHHHHHHHHcC-CCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 043110 33 ASCCFSSLGLDSTLCDQLRERLG-FEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~g-~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~ 90 (316)
...+|+++.-.+.+.+.+.+... +..|..++... ....+.+++.||+|+|||...
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHHH
Confidence 34678888877777776633211 11111111100 012346999999999999764
No 226
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=80.40 E-value=0.94 Score=40.54 Aligned_cols=20 Identities=35% Similarity=0.511 Sum_probs=17.7
Q ss_pred HhCCCcEEEEcCCCCchHHH
Q 043110 70 ILSGRDVLVNAATGTGKTVA 89 (316)
Q Consensus 70 il~g~d~li~a~TGsGKT~~ 89 (316)
+..|..+++.+|||||||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 45788999999999999975
No 227
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.29 E-value=0.82 Score=41.99 Aligned_cols=54 Identities=22% Similarity=0.283 Sum_probs=33.4
Q ss_pred cCCcccCCCCHHHHHHHHHHc--CCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 043110 34 SCCFSSLGLDSTLCDQLRERL--GFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 34 ~~~f~~~~l~~~l~~~l~~~~--g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~ 90 (316)
..+|++.|=-.++++.|.+.. .+.+|--++..- +...+-+++.||+|+|||+.+
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 358999987777777774432 122222222211 123356999999999999874
No 228
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=80.21 E-value=12 Score=30.33 Aligned_cols=69 Identities=16% Similarity=0.126 Sum_probs=46.9
Q ss_pred eEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHH---Hhc-CCcEEEeCcHHHHHHHhcCCccccCce
Q 043110 112 FALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKAR---LRK-GISILVATPGHLLDHLKHTSSFLHTNL 187 (316)
Q Consensus 112 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~-~~~IlV~Tp~~l~~~l~~~~~~~~~~l 187 (316)
++||.++++.-+..+.+.+...+ ..+..++|+......... +.. ..+|+|+|.- +. .++++.++
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~~-----~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~~--~Gidi~~v 100 (212)
T 3eaq_A 33 RAMVFTRTKAETEEIAQGLLRLG-----HPAQALHGDLSQGERERVLGAFRQGEVRVLVATDV-----AA--RGLDIPQV 100 (212)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHT-----CCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTT-----TT--CSSSCCCB
T ss_pred eEEEEeCCHHHHHHHHHHHHHcC-----CCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecCh-----hh--cCCCCccC
Confidence 49999999999999888887642 445667777665544332 333 4689999931 11 45666778
Q ss_pred eEEEE
Q 043110 188 RWIIF 192 (316)
Q Consensus 188 ~~lVi 192 (316)
+++|.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 87764
No 229
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=80.05 E-value=0.95 Score=36.59 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=15.3
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.|+-+.+.||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677999999999999864
No 230
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.87 E-value=1.1 Score=41.16 Aligned_cols=55 Identities=22% Similarity=0.352 Sum_probs=35.1
Q ss_pred ccCCcccCCCCHHHHHHHHHHc--CCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 043110 33 ASCCFSSLGLDSTLCDQLRERL--GFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~--g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~ 90 (316)
...+|++.|=-++.++.|.+.. .+.+|--++...+ .-.+.+++.+|+|+|||+.+
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 4468999986666666664432 2334444443322 12367999999999999864
No 231
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=79.50 E-value=0.8 Score=39.00 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=17.4
Q ss_pred HhCCCcEEEEcCCCCchHHHH
Q 043110 70 ILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 70 il~g~d~li~a~TGsGKT~~~ 90 (316)
+..|.-+.+.+|||||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 346777999999999999764
No 232
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=79.13 E-value=1.1 Score=36.10 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=16.8
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.++.+++.|++|||||...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 5778999999999999875
No 233
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=78.47 E-value=42 Score=31.29 Aligned_cols=77 Identities=16% Similarity=0.138 Sum_probs=52.5
Q ss_pred CeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHH---Hh-cCCcEEEeCcHHHHHHHhcCCccccC
Q 043110 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKAR---LR-KGISILVATPGHLLDHLKHTSSFLHT 185 (316)
Q Consensus 110 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~-~~~~IlV~Tp~~l~~~l~~~~~~~~~ 185 (316)
+.++||.++++.-|..+++.+..... ....+..++++......... +. ...+|+|+|. .+. .++++.
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~--~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~--~GiDip 409 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFK--KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA--RGMDFP 409 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHT--TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT--SSCCCT
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhcc--CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhh--cCCCcc
Confidence 55699999999999999998887643 13455567777665443332 22 3578999994 122 466777
Q ss_pred ceeEEEEecc
Q 043110 186 NLRWIIFDEA 195 (316)
Q Consensus 186 ~l~~lViDEa 195 (316)
+++++|.-..
T Consensus 410 ~v~~VI~~~~ 419 (563)
T 3i5x_A 410 NVHEVLQIGV 419 (563)
T ss_dssp TCCEEEEESC
T ss_pred cCCEEEEECC
Confidence 8888886543
No 234
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=78.28 E-value=1.1 Score=36.31 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=17.6
Q ss_pred HhCCCcEEEEcCCCCchHHHH
Q 043110 70 ILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 70 il~g~d~li~a~TGsGKT~~~ 90 (316)
+..|+-+++.||+|||||...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 446778999999999999754
No 235
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=77.82 E-value=1.6 Score=38.98 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=16.4
Q ss_pred CCCc--EEEEcCCCCchHHHH
Q 043110 72 SGRD--VLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d--~li~a~TGsGKT~~~ 90 (316)
.|.+ ++..++||||||...
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4777 699999999999874
No 236
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=77.81 E-value=5.4 Score=37.18 Aligned_cols=50 Identities=14% Similarity=0.019 Sum_probs=29.4
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEIL 130 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~ 130 (316)
.|.-+++.|++|+|||...+- ++..+... .+..++|++-- +-..|+..++
T Consensus 241 ~G~l~li~G~pG~GKT~lal~-~a~~~a~~-------~g~~vl~~s~E-~s~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQ-QALQWGTA-------MGKKVGLAMLE-ESVEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHH-HHHHHTTT-------SCCCEEEEESS-SCHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHH-HHHHHHHh-------cCCcEEEEecc-CCHHHHHHHH
Confidence 455689999999999976533 33333321 13347777643 2244555544
No 237
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=77.70 E-value=1.3 Score=36.08 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=16.1
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.|+-+++.||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4667899999999999864
No 238
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=77.27 E-value=1.2 Score=39.37 Aligned_cols=20 Identities=45% Similarity=0.700 Sum_probs=17.4
Q ss_pred HhCCCcEEEEcCCCCchHHH
Q 043110 70 ILSGRDVLVNAATGTGKTVA 89 (316)
Q Consensus 70 il~g~d~li~a~TGsGKT~~ 89 (316)
+..|+.+.+.+|||||||..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 34788999999999999974
No 239
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=77.13 E-value=1.3 Score=35.52 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=16.7
Q ss_pred hCCCcEEEEcCCCCchHHHH
Q 043110 71 LSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 71 l~g~d~li~a~TGsGKT~~~ 90 (316)
..|.-+.+.||+|||||...
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHH
Confidence 35777899999999999864
No 240
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=77.06 E-value=13 Score=32.18 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=14.0
Q ss_pred cEEEEcCCCCchHHHHH
Q 043110 75 DVLVNAATGTGKTVAYL 91 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~ 91 (316)
-+++.+++|+|||....
T Consensus 106 vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEcCCCChHHHHHH
Confidence 47899999999997643
No 241
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=77.06 E-value=0.98 Score=35.57 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=17.4
Q ss_pred hCCCcEEEEcCCCCchHHHHH
Q 043110 71 LSGRDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 71 l~g~d~li~a~TGsGKT~~~~ 91 (316)
..++.+++.|++|||||...-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 356789999999999998643
No 242
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=76.96 E-value=1.9 Score=37.39 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=16.3
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.+..+++.|++|+|||...
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4567999999999999764
No 243
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=76.89 E-value=1.2 Score=38.24 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=31.8
Q ss_pred ccCCcccCCCCHHHHHHHHHHcCCCCCcHHHH-HHHHHH-hCCCcEEEEcCCCCchHHHH
Q 043110 33 ASCCFSSLGLDSTLCDQLRERLGFEAPTKVQA-QAIPVI-LSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~-~~i~~i-l~g~d~li~a~TGsGKT~~~ 90 (316)
...+|+++.=.+..++.|.+.... +... +.+..+ ..++.+++.||+|+|||...
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~----~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVIL----PSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHH----HHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHh----hhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 345788887777777777443210 0000 000001 13567999999999999864
No 244
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=76.67 E-value=1.4 Score=39.04 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCchHHHHH
Q 043110 74 RDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~ 91 (316)
+-+++.||||+|||....
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999998753
No 245
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=76.52 E-value=1.4 Score=35.43 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=16.8
Q ss_pred hCCCcEEEEcCCCCchHHHH
Q 043110 71 LSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 71 l~g~d~li~a~TGsGKT~~~ 90 (316)
..|.-+.+.||+|||||...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45777899999999999764
No 246
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=76.39 E-value=1.3 Score=38.83 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCchHHHHH
Q 043110 74 RDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~ 91 (316)
+-+++.||||+|||....
T Consensus 4 ~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCcCCHHHHHH
Confidence 347899999999997653
No 247
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=76.29 E-value=1.4 Score=34.75 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 043110 73 GRDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~ 91 (316)
++.+++.|++|||||...-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5679999999999998753
No 248
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=76.21 E-value=7.3 Score=30.83 Aligned_cols=71 Identities=20% Similarity=0.171 Sum_probs=39.8
Q ss_pred CeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHH---HHHHh-cCCcEEEeCcHHHHHHHhcCCccccC
Q 043110 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKE---KARLR-KGISILVATPGHLLDHLKHTSSFLHT 185 (316)
Q Consensus 110 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~-~~~~IlV~Tp~~l~~~l~~~~~~~~~ 185 (316)
+.++||.++++.-+..+.+.++.. ...+..+.|+...... ...+. ...+|+|+|. .+. .++++.
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~------~Gldi~ 113 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-VAA------RGLDIS 113 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT-----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC-------------CCC
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc-----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-hhh------cCCCcc
Confidence 345999999999999888887663 2345556665443322 22333 3578999993 221 345556
Q ss_pred ceeEEEE
Q 043110 186 NLRWIIF 192 (316)
Q Consensus 186 ~l~~lVi 192 (316)
+++++|.
T Consensus 114 ~~~~VI~ 120 (185)
T 2jgn_A 114 NVKHVIN 120 (185)
T ss_dssp SBSEEEE
T ss_pred cCCEEEE
Confidence 7777775
No 249
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=76.02 E-value=4.3 Score=38.60 Aligned_cols=27 Identities=33% Similarity=0.458 Sum_probs=19.5
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHhhh
Q 043110 74 RDVLVNAATGTGKTVAYLAPIINHLQS 100 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~lp~l~~l~~ 100 (316)
.++++.+.||||||.+.-.-++..+..
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~ 241 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFK 241 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHh
Confidence 579999999999998754444444433
No 250
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=75.99 E-value=1.2 Score=39.41 Aligned_cols=18 Identities=50% Similarity=0.743 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
++.+++.||+|+|||...
T Consensus 70 ~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp TCEEEEEESTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 457999999999999875
No 251
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=75.88 E-value=1.4 Score=38.59 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
-+++.||||+|||...
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3789999999999765
No 252
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=75.73 E-value=1.5 Score=34.23 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
++-+++.|++|||||...
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999864
No 253
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=75.68 E-value=20 Score=31.84 Aligned_cols=71 Identities=20% Similarity=0.184 Sum_probs=48.8
Q ss_pred CeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHH---Hh-cCCcEEEeCcHHHHHHHhcCCccccC
Q 043110 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKAR---LR-KGISILVATPGHLLDHLKHTSSFLHT 185 (316)
Q Consensus 110 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~-~~~~IlV~Tp~~l~~~l~~~~~~~~~ 185 (316)
+.++||.+++++-+..+++.+... ...+..++++......... +. ...+|+|+|. .+. .++++.
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~--~Gidip 343 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA--RGLDIS 343 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHH--TTSCCC
T ss_pred CCeEEEEECCHHHHHHHHHHHHHC-----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh--cCCCcc
Confidence 566999999999999988887763 2455667777665443322 22 3578999994 222 456667
Q ss_pred ceeEEEE
Q 043110 186 NLRWIIF 192 (316)
Q Consensus 186 ~l~~lVi 192 (316)
+++++|.
T Consensus 344 ~v~~Vi~ 350 (417)
T 2i4i_A 344 NVKHVIN 350 (417)
T ss_dssp CEEEEEE
T ss_pred cCCEEEE
Confidence 8888775
No 254
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=75.64 E-value=1.7 Score=33.73 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=15.9
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.+..+.+.++.|||||...
T Consensus 3 ~~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCCEEEECCTTSCHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3567999999999999764
No 255
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=75.61 E-value=1.8 Score=42.57 Aligned_cols=25 Identities=36% Similarity=0.557 Sum_probs=21.4
Q ss_pred HHHHHhCCCc--EEEEcCCCCchHHHH
Q 043110 66 AIPVILSGRD--VLVNAATGTGKTVAY 90 (316)
Q Consensus 66 ~i~~il~g~d--~li~a~TGsGKT~~~ 90 (316)
.+..+++|.| ++..++||||||.+.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 5677889998 788999999999874
No 256
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=75.18 E-value=4.9 Score=37.68 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=18.8
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHh
Q 043110 73 GRDVLVNAATGTGKTVAYLAPIINHL 98 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~lp~l~~l 98 (316)
+.++++.++||||||.+.-.-+...+
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl 192 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSML 192 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999987533333333
No 257
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=74.94 E-value=1.5 Score=33.80 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
-+++.|++|||||...
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999864
No 258
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=74.90 E-value=1.7 Score=35.91 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=16.8
Q ss_pred HhCCCcEEEEcCCCCchHHHH
Q 043110 70 ILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 70 il~g~d~li~a~TGsGKT~~~ 90 (316)
+..|+-+++.||+|+|||...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 456778999999999999864
No 259
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=74.55 E-value=4.1 Score=37.15 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=18.6
Q ss_pred HHHHHHHHh--CCCcEEEEcCCCCchHHH
Q 043110 63 QAQAIPVIL--SGRDVLVNAATGTGKTVA 89 (316)
Q Consensus 63 Q~~~i~~il--~g~d~li~a~TGsGKT~~ 89 (316)
+..++..++ .|.-+++.+|||||||..
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 334444333 344589999999999976
No 260
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=74.31 E-value=1.9 Score=35.27 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=15.4
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.|+-+++.+|||+|||...
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3556899999999998653
No 261
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=74.21 E-value=1.9 Score=35.43 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=16.7
Q ss_pred hCCCcEEEEcCCCCchHHHH
Q 043110 71 LSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 71 l~g~d~li~a~TGsGKT~~~ 90 (316)
..|+-+.+.+|+|+|||...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 36788999999999999764
No 262
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=74.12 E-value=1.8 Score=35.09 Aligned_cols=19 Identities=16% Similarity=0.380 Sum_probs=16.6
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.|+-+++.||+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 6778999999999999864
No 263
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=73.78 E-value=60 Score=30.47 Aligned_cols=77 Identities=16% Similarity=0.132 Sum_probs=52.3
Q ss_pred CeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHH---Hh-cCCcEEEeCcHHHHHHHhcCCccccC
Q 043110 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKAR---LR-KGISILVATPGHLLDHLKHTSSFLHT 185 (316)
Q Consensus 110 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~-~~~~IlV~Tp~~l~~~l~~~~~~~~~ 185 (316)
+.++||.++|+.-|..+++.+..... ....+..++|+......... +. ...+|+|+|.- +. .++++.
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~--~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~-----~~--~GiDip 358 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK--KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV-----GA--RGMDFP 358 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT--TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG-----GT--SSCCCT
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc--CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcch-----hh--cCCCcc
Confidence 45699999999999999998887643 13455567777665443322 22 35789999941 22 456667
Q ss_pred ceeEEEEecc
Q 043110 186 NLRWIIFDEA 195 (316)
Q Consensus 186 ~l~~lViDEa 195 (316)
+++++|.-..
T Consensus 359 ~v~~VI~~~~ 368 (579)
T 3sqw_A 359 NVHEVLQIGV 368 (579)
T ss_dssp TCCEEEEESC
T ss_pred cCCEEEEcCC
Confidence 8888886654
No 264
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=73.75 E-value=1.4 Score=34.85 Aligned_cols=20 Identities=30% Similarity=0.537 Sum_probs=16.6
Q ss_pred hCCCcEEEEcCCCCchHHHH
Q 043110 71 LSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 71 l~g~d~li~a~TGsGKT~~~ 90 (316)
..|.-+++.|++|||||...
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35677999999999999753
No 265
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=73.65 E-value=5.3 Score=34.39 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
...+++.||+|+|||...
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 367999999999999864
No 266
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=73.36 E-value=1.9 Score=34.16 Aligned_cols=19 Identities=37% Similarity=0.630 Sum_probs=16.4
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.+..+++.++.|||||...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667999999999999864
No 267
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=73.35 E-value=1.7 Score=36.69 Aligned_cols=17 Identities=29% Similarity=0.233 Sum_probs=14.1
Q ss_pred cEEEEcCCCCchHHHHH
Q 043110 75 DVLVNAATGTGKTVAYL 91 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~ 91 (316)
-+++.+|+|||||....
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 36899999999998653
No 268
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=73.28 E-value=1.9 Score=34.17 Aligned_cols=17 Identities=29% Similarity=0.675 Sum_probs=14.2
Q ss_pred CcEEEEcCCCCchHHHH
Q 043110 74 RDVLVNAATGTGKTVAY 90 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~ 90 (316)
+-+.+.||+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999764
No 269
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=73.02 E-value=1.6 Score=38.94 Aligned_cols=19 Identities=37% Similarity=0.510 Sum_probs=15.9
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.+.-+++.||||||||...
T Consensus 122 ~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4557999999999999763
No 270
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=72.93 E-value=1.7 Score=34.13 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=16.4
Q ss_pred CCCcEEEEcCCCCchHHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~ 91 (316)
.|.-+.+.+|+|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 45668899999999998754
No 271
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=72.50 E-value=1.5 Score=39.33 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=16.8
Q ss_pred hCCCcEEEEcCCCCchHHHH
Q 043110 71 LSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 71 l~g~d~li~a~TGsGKT~~~ 90 (316)
..|..+++.+|||||||...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 45677999999999999764
No 272
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=72.21 E-value=2.1 Score=33.73 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
+.-+++.|+.|||||...
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 567899999999999864
No 273
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=72.12 E-value=4.3 Score=45.82 Aligned_cols=46 Identities=20% Similarity=0.300 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCCCCCcHHH-HHHH---HHHhCCCcEEEEcCCCCchHHHHH
Q 043110 44 STLCDQLRERLGFEAPTKVQ-AQAI---PVILSGRDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 44 ~~l~~~l~~~~g~~~p~~~Q-~~~i---~~il~g~d~li~a~TGsGKT~~~~ 91 (316)
..+.+.+ .+.|+. +.+.+ .+++ ..+...+.+++.||||||||.++-
T Consensus 892 ~~i~~~~-~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 892 QCLKDAG-QRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHH-HHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHH-HHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 4455566 556876 55555 3333 333456679999999999999874
No 274
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=71.95 E-value=2.2 Score=34.31 Aligned_cols=17 Identities=29% Similarity=0.675 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCchHHHH
Q 043110 74 RDVLVNAATGTGKTVAY 90 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~ 90 (316)
+-+++.||+|+|||...
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45899999999999753
No 275
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=71.91 E-value=2.1 Score=38.16 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
..++++.||+|+|||...
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 457999999999999764
No 276
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=71.70 E-value=2.2 Score=34.22 Aligned_cols=19 Identities=37% Similarity=0.532 Sum_probs=16.3
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.|.-+++.|+.|||||...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4677999999999999764
No 277
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=71.61 E-value=4 Score=36.34 Aligned_cols=40 Identities=23% Similarity=0.237 Sum_probs=25.9
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCCh
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTS 120 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~ 120 (316)
.|.-+++.+++|+|||...+--+.+.... +..++|+....
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~---------g~~vlyid~E~ 101 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---------GKTCAFIDAEH 101 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---------TCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC---------CCeEEEEeCCC
Confidence 34669999999999998764433333222 23488887543
No 278
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=71.53 E-value=1.8 Score=37.35 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCchHHHH
Q 043110 74 RDVLVNAATGTGKTVAY 90 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~ 90 (316)
+.+++.||+|+|||...
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999864
No 279
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=71.39 E-value=2 Score=39.68 Aligned_cols=50 Identities=26% Similarity=0.214 Sum_probs=29.6
Q ss_pred ccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHHH
Q 043110 33 ASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~~ 91 (316)
....|+++.-...+++.+..-. ...-.....++.+++.+|+|+|||....
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~---------~~~~~~~~~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIV---------ELIKSKKMAGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHH---------HHHHTTCCTTCEEEEECCTTSSHHHHHH
T ss_pred hhhchhhccCHHHHHHHHHHHH---------HHHHhCCCCCCeEEEECCCcCCHHHHHH
Confidence 3445777766666666552210 0000111234679999999999998753
No 280
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=71.37 E-value=2.2 Score=34.47 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=16.9
Q ss_pred HHhCCCcEEEEcCCCCchHHHH
Q 043110 69 VILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 69 ~il~g~d~li~a~TGsGKT~~~ 90 (316)
.+..|+-+.+.+|+|+|||...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4567888999999999999764
No 281
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=71.06 E-value=5.1 Score=33.27 Aligned_cols=21 Identities=52% Similarity=0.760 Sum_probs=16.6
Q ss_pred CCC-cEEEEcCCCCchHHHHHH
Q 043110 72 SGR-DVLVNAATGTGKTVAYLA 92 (316)
Q Consensus 72 ~g~-d~li~a~TGsGKT~~~~l 92 (316)
.|+ ++++.++.|+|||...+-
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHH
Confidence 344 589999999999987543
No 282
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=70.94 E-value=2.4 Score=36.44 Aligned_cols=18 Identities=33% Similarity=0.289 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCchHHHHH
Q 043110 74 RDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~ 91 (316)
..+++.||+|+|||..+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 369999999999998753
No 283
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=70.93 E-value=11 Score=31.80 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=18.8
Q ss_pred HhCCCcEEEEcCCCCchHHHHHH
Q 043110 70 ILSGRDVLVNAATGTGKTVAYLA 92 (316)
Q Consensus 70 il~g~d~li~a~TGsGKT~~~~l 92 (316)
+..|.-+++.+++|+|||.....
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHH
Confidence 45777899999999999987544
No 284
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=70.56 E-value=1.7 Score=34.26 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=15.9
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.|..+++.|+.|||||...
T Consensus 3 ~g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556899999999999864
No 285
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=70.50 E-value=2.2 Score=33.18 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=13.7
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
-+++.|++|||||...
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3789999999999864
No 286
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=70.14 E-value=14 Score=28.62 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=48.0
Q ss_pred eeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHH---HHh-cCCcEEEeCcHHHHHHHhcCCccccCc
Q 043110 111 TFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA---RLR-KGISILVATPGHLLDHLKHTSSFLHTN 186 (316)
Q Consensus 111 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~-~~~~IlV~Tp~~l~~~l~~~~~~~~~~ 186 (316)
.++||.++++.-+..+++.+... ...+..++|+........ .+. ...+|+|+|.- -..++++.+
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-------~~~Gldi~~ 99 (172)
T 1t5i_A 32 NQVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-------FGRGMDIER 99 (172)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-------CSTTCCGGG
T ss_pred CcEEEEECCHHHHHHHHHHHHhc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-------hhcCcchhh
Confidence 35999999999999988887764 244556677766544332 223 34789999942 124556677
Q ss_pred eeEEEEec
Q 043110 187 LRWIIFDE 194 (316)
Q Consensus 187 l~~lViDE 194 (316)
++++|.-+
T Consensus 100 ~~~Vi~~d 107 (172)
T 1t5i_A 100 VNIAFNYD 107 (172)
T ss_dssp CSEEEESS
T ss_pred CCEEEEEC
Confidence 88887644
No 287
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=70.10 E-value=31 Score=30.13 Aligned_cols=74 Identities=14% Similarity=0.097 Sum_probs=49.9
Q ss_pred CeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHH---Hh-cCCcEEEeCcHHHHHHHhcCCccccC
Q 043110 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKAR---LR-KGISILVATPGHLLDHLKHTSSFLHT 185 (316)
Q Consensus 110 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~-~~~~IlV~Tp~~l~~~l~~~~~~~~~ 185 (316)
+.++||.+++++-+..+++.+... ...+..++++......... +. ...+|+|+|.- -..++++.
T Consensus 250 ~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-------~~~Gidi~ 317 (391)
T 1xti_A 250 FNQVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-------FGRGMDIE 317 (391)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCC-------CSSCBCCT
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECCh-------hhcCCCcc
Confidence 456999999999999988887763 2345566777665443322 22 34789999941 12466777
Q ss_pred ceeEEEEecc
Q 043110 186 NLRWIIFDEA 195 (316)
Q Consensus 186 ~l~~lViDEa 195 (316)
.++++|.-+.
T Consensus 318 ~~~~Vi~~~~ 327 (391)
T 1xti_A 318 RVNIAFNYDM 327 (391)
T ss_dssp TEEEEEESSC
T ss_pred cCCEEEEeCC
Confidence 8998887554
No 288
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=70.05 E-value=5.5 Score=34.40 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 043110 73 GRDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~ 91 (316)
|+-+.+.+++|+|||....
T Consensus 105 g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568899999999998753
No 289
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=70.01 E-value=2.1 Score=33.42 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=15.7
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.|.-+++.++.|||||...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp TSEEEEEECSTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3556899999999999864
No 290
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=69.82 E-value=2.3 Score=32.84 Aligned_cols=16 Identities=6% Similarity=0.009 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
-+++.|+.|||||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999864
No 291
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=69.70 E-value=22 Score=33.88 Aligned_cols=71 Identities=18% Similarity=0.179 Sum_probs=47.5
Q ss_pred CeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHH---Hh-cCCcEEEeCcHHHHHHHhcCCccccC
Q 043110 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKAR---LR-KGISILVATPGHLLDHLKHTSSFLHT 185 (316)
Q Consensus 110 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~-~~~~IlV~Tp~~l~~~l~~~~~~~~~ 185 (316)
+..+||.++++.-++++++.+... ...+..++++......... +. ...+|+|+|.- -..++++.
T Consensus 267 ~~~~IVf~~sr~~~e~la~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a-------~~~GID~p 334 (591)
T 2v1x_A 267 GQSGIIYCFSQKDSEQVTVSLQNL-----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVA-------FGMGIDKP 334 (591)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTT-------SCTTCCCS
T ss_pred CCCeEEEeCcHHHHHHHHHHHHHC-----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech-------hhcCCCcc
Confidence 456999999999999999888764 2455667777765544322 22 34789999941 11345566
Q ss_pred ceeEEEE
Q 043110 186 NLRWIIF 192 (316)
Q Consensus 186 ~l~~lVi 192 (316)
+++++|.
T Consensus 335 ~V~~VI~ 341 (591)
T 2v1x_A 335 DVRFVIH 341 (591)
T ss_dssp CEEEEEE
T ss_pred cccEEEE
Confidence 7777664
No 292
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=69.44 E-value=57 Score=28.40 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
|.-+.+.+|+|+|||...
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345899999999999864
No 293
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=68.83 E-value=2.4 Score=37.65 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
.+.+++.||+|+|||...
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999875
No 294
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=68.82 E-value=40 Score=29.31 Aligned_cols=76 Identities=12% Similarity=0.122 Sum_probs=51.9
Q ss_pred CeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHH---HHhc-CCcEEEeCcHHHHHHHhcCCccccC
Q 043110 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA---RLRK-GISILVATPGHLLDHLKHTSSFLHT 185 (316)
Q Consensus 110 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~-~~~IlV~Tp~~l~~~l~~~~~~~~~ 185 (316)
+.++||.++++.-+..+++.++.. ...+..++++........ .+.. ..+|+|+|. .+ ..++++.
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~--~~Gidip 310 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE-----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VL--ARGIDIP 310 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GG--SSSCCCT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh--hcCCCcc
Confidence 457999999999999888888764 244566777766544332 2333 468999994 12 2566778
Q ss_pred ceeEEEEecchh
Q 043110 186 NLRWIIFDEADR 197 (316)
Q Consensus 186 ~l~~lViDEad~ 197 (316)
+++++|.-+...
T Consensus 311 ~~~~Vi~~~~p~ 322 (395)
T 3pey_A 311 TVSMVVNYDLPT 322 (395)
T ss_dssp TEEEEEESSCCB
T ss_pred cCCEEEEcCCCC
Confidence 899988765543
No 295
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=68.74 E-value=3.1 Score=36.60 Aligned_cols=17 Identities=24% Similarity=0.347 Sum_probs=14.5
Q ss_pred cEEEEcCCCCchHHHHH
Q 043110 75 DVLVNAATGTGKTVAYL 91 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~ 91 (316)
-+++.||||||||....
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999998653
No 296
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=68.64 E-value=29 Score=30.58 Aligned_cols=72 Identities=15% Similarity=0.006 Sum_probs=49.5
Q ss_pred CeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHH---Hh-cCCcEEEeCcHHHHHHHhcCCccccC
Q 043110 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKAR---LR-KGISILVATPGHLLDHLKHTSSFLHT 185 (316)
Q Consensus 110 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~-~~~~IlV~Tp~~l~~~l~~~~~~~~~ 185 (316)
+.++||.++++.-+..+++.+... ...+..++|+......... +. ...+|+|+|. .+. .++++.
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidip 333 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA--RGIDVE 333 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT--SSCCCT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----ccc--cCCCcc
Confidence 346999999999999988888764 2455667777665544332 33 3478999994 122 566777
Q ss_pred ceeEEEEe
Q 043110 186 NLRWIIFD 193 (316)
Q Consensus 186 ~l~~lViD 193 (316)
+++++|.-
T Consensus 334 ~~~~Vi~~ 341 (412)
T 3fht_A 334 QVSVVINF 341 (412)
T ss_dssp TEEEEEES
T ss_pred CCCEEEEE
Confidence 89888753
No 297
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=68.17 E-value=2.5 Score=35.24 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=30.8
Q ss_pred ccCCcccCCCCHHHHHHHHHHc-CCCCCcHHHHHHHHHHh--CCCcEEEEcCCCCchHHHH
Q 043110 33 ASCCFSSLGLDSTLCDQLRERL-GFEAPTKVQAQAIPVIL--SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~-g~~~p~~~Q~~~i~~il--~g~d~li~a~TGsGKT~~~ 90 (316)
...+|+++.-.+.....+.+-. .+.. ..++..+. -.+.+++.+|+|+|||...
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~-----~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFLKN-----PSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHC-----HHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHC-----HHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 3467888877777666663211 0111 12232221 1234999999999999764
No 298
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=68.14 E-value=5.4 Score=36.64 Aligned_cols=50 Identities=16% Similarity=-0.017 Sum_probs=29.2
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHHHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVYEILQ 131 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~ 131 (316)
.|.-+++.|++|+|||...+- ++...... +..++|++-- +-..|+..++.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~-ia~~~a~~--------g~~vl~fSlE-ms~~ql~~R~~ 245 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALK-QAKNMSDN--------DDVVNLHSLE-MGKKENIKRLI 245 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHH-HHHHHHHT--------TCEEEEECSS-SCTTHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHH-HHHHHHHc--------CCEEEEEECC-CCHHHHHHHHH
Confidence 445599999999999976543 33333331 3347777633 22344444443
No 299
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=67.96 E-value=2.6 Score=37.31 Aligned_cols=16 Identities=25% Similarity=0.301 Sum_probs=14.1
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
-+++.||||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5789999999999865
No 300
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=67.87 E-value=3.3 Score=34.92 Aligned_cols=20 Identities=35% Similarity=0.561 Sum_probs=17.7
Q ss_pred hCCCcEEEEcCCCCchHHHH
Q 043110 71 LSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 71 l~g~d~li~a~TGsGKT~~~ 90 (316)
+.|+.+++.+++|+|||...
T Consensus 46 l~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35899999999999999874
No 301
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=67.45 E-value=1.4 Score=37.15 Aligned_cols=18 Identities=39% Similarity=0.536 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
.+.+++.||+|+|||...
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 356999999999999875
No 302
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=67.35 E-value=41 Score=31.32 Aligned_cols=31 Identities=16% Similarity=0.108 Sum_probs=22.3
Q ss_pred CceeEEEEecchhhhcCC-----cHHHHHHHHHHhcc
Q 043110 185 TNLRWIIFDEADRILELG-----FGKEIEEILDILGS 216 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~-----~~~~i~~i~~~l~~ 216 (316)
.+.+++|+| -=.-++.. ....+..++..+..
T Consensus 370 ~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~ 405 (525)
T 1tf7_A 370 FKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ 405 (525)
T ss_dssp TCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH
T ss_pred hCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh
Confidence 456899999 66666766 66777777777754
No 303
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=67.25 E-value=36 Score=29.84 Aligned_cols=72 Identities=14% Similarity=0.089 Sum_probs=48.5
Q ss_pred CeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHH---HHh-cCCcEEEeCcHHHHHHHhcCCccccC
Q 043110 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA---RLR-KGISILVATPGHLLDHLKHTSSFLHT 185 (316)
Q Consensus 110 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~-~~~~IlV~Tp~~l~~~l~~~~~~~~~ 185 (316)
+.++||.+++++-+..+++.+...+ ..+..++++........ .+. ...+|+|+|. .+ ..++++.
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~~-----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~--~~Gidip 325 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDLG-----YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LL--TRGIDIQ 325 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHHT-----CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CS--SSSCCCT
T ss_pred CCcEEEEEecHHHHHHHHHHHHhcC-----CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----cc--ccCCCcc
Confidence 3469999999999999888887653 34456667666544332 233 3468999994 11 2456777
Q ss_pred ceeEEEEe
Q 043110 186 NLRWIIFD 193 (316)
Q Consensus 186 ~l~~lViD 193 (316)
+++++|.-
T Consensus 326 ~~~~Vi~~ 333 (400)
T 1s2m_A 326 AVNVVINF 333 (400)
T ss_dssp TEEEEEES
T ss_pred CCCEEEEe
Confidence 88887753
No 304
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=67.12 E-value=4.2 Score=32.93 Aligned_cols=17 Identities=29% Similarity=0.558 Sum_probs=14.2
Q ss_pred cEEEEcCCCCchHHHHH
Q 043110 75 DVLVNAATGTGKTVAYL 91 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~ 91 (316)
-.++.|+.|||||...+
T Consensus 7 i~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 36899999999999653
No 305
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=67.03 E-value=19 Score=33.23 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=20.8
Q ss_pred HHHHH---hCCCcEEEEcCCCCchHHHHHH
Q 043110 66 AIPVI---LSGRDVLVNAATGTGKTVAYLA 92 (316)
Q Consensus 66 ~i~~i---l~g~d~li~a~TGsGKT~~~~l 92 (316)
+|..+ ..|+..++.++.|.|||.....
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~ 170 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLIQE 170 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHHHH
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHHHH
Confidence 45544 3788899999999999976543
No 306
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=67.01 E-value=5.1 Score=41.62 Aligned_cols=39 Identities=28% Similarity=0.486 Sum_probs=26.7
Q ss_pred EEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChH
Q 043110 77 LVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSE 121 (316)
Q Consensus 77 li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~ 121 (316)
+|.|..|||||.+.+--+...+.. .. .+..+|+++|...
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~-~~-----~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRR-AP-----FGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHH-CT-----TSSCEEEECCGGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHh-CC-----CCCcEEEEecCcc
Confidence 788999999999866555555544 21 2244888888763
No 307
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=66.94 E-value=8.1 Score=44.29 Aligned_cols=46 Identities=11% Similarity=0.211 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCCCCCcHHH-HHHHHH---HhCCCcEEEEcCCCCchHHHHH
Q 043110 44 STLCDQLRERLGFEAPTKVQ-AQAIPV---ILSGRDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 44 ~~l~~~l~~~~g~~~p~~~Q-~~~i~~---il~g~d~li~a~TGsGKT~~~~ 91 (316)
..+.+.+ .+.|+. |.+.+ .+++.. +...+-+++.||||||||.++-
T Consensus 875 ~ai~~~~-~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 875 KKIQEIA-KQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHH-HHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHH-HHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 4455556 567887 56555 445433 3344559999999999999974
No 308
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=66.80 E-value=3.3 Score=33.34 Aligned_cols=21 Identities=29% Similarity=0.240 Sum_probs=16.8
Q ss_pred CCCcEEEEcCCCCchHHHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAYLA 92 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~l 92 (316)
.|.-+++.+++|+|||.....
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 455689999999999986543
No 309
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=66.64 E-value=2.7 Score=38.20 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=16.1
Q ss_pred hhhhcCCcHHHHHHHHHHh
Q 043110 196 DRILELGFGKEIEEILDIL 214 (316)
Q Consensus 196 d~l~~~~~~~~i~~i~~~l 214 (316)
|.|++.|+.+++..++...
T Consensus 210 d~Ml~~GlleEv~~L~~~~ 228 (409)
T 3eph_A 210 DDMLERGALQEIKQLYEYY 228 (409)
T ss_dssp HHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHCcHHHHHHHHHHhc
Confidence 5688889999999999874
No 310
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=66.21 E-value=2.9 Score=33.38 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=16.3
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.|.-+++.|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4667999999999999864
No 311
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=66.19 E-value=3.4 Score=32.66 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=16.8
Q ss_pred hCCCcEEEEcCCCCchHHHH
Q 043110 71 LSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 71 l~g~d~li~a~TGsGKT~~~ 90 (316)
..+.-+++.|+.|||||...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35667999999999999864
No 312
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=66.13 E-value=77 Score=28.72 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchHHHHH
Q 043110 75 DVLVNAATGTGKTVAYL 91 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~ 91 (316)
-+.+.+++|+|||....
T Consensus 100 vi~i~G~~GsGKTT~~~ 116 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAA 116 (425)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46778999999998653
No 313
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=66.03 E-value=2.8 Score=33.63 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=16.2
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.|.-+.+.+++|||||...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5667899999999999764
No 314
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=65.94 E-value=17 Score=37.67 Aligned_cols=78 Identities=18% Similarity=0.120 Sum_probs=54.9
Q ss_pred CeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHH---HHh-cCCcEEEeCcHHHHHHHhcCCccccC
Q 043110 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA---RLR-KGISILVATPGHLLDHLKHTSSFLHT 185 (316)
Q Consensus 110 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~-~~~~IlV~Tp~~l~~~l~~~~~~~~~ 185 (316)
+.+++|++++++-+..+++.++... ....+..++|+........ .+. ...+|+|||. .+. .++++.
T Consensus 812 g~qvlvf~~~v~~~~~l~~~L~~~~---p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~-----v~e--~GiDip 881 (1151)
T 2eyq_A 812 GGQVYYLYNDVENIQKAAERLAELV---PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIE--TGIDIP 881 (1151)
T ss_dssp TCEEEEECCCSSCHHHHHHHHHHHC---TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----TTG--GGSCCT
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhC---CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC-----cce--eeeccc
Confidence 5679999999999998888887763 2345666777766544332 233 3579999995 122 466778
Q ss_pred ceeEEEEecchh
Q 043110 186 NLRWIIFDEADR 197 (316)
Q Consensus 186 ~l~~lViDEad~ 197 (316)
+++++|+..+|.
T Consensus 882 ~v~~VIi~~~~~ 893 (1151)
T 2eyq_A 882 TANTIIIERADH 893 (1151)
T ss_dssp TEEEEEETTTTS
T ss_pred CCcEEEEeCCCC
Confidence 899999887765
No 315
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=65.78 E-value=8.8 Score=32.71 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=28.6
Q ss_pred cccCCcccCCCCHHHHHHHHHHcCCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 043110 32 FASCCFSSLGLDSTLCDQLRERLGFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 32 ~~~~~f~~~~l~~~l~~~l~~~~g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~ 90 (316)
+...+|+++--.+...+.+.+. +.. -...++++.||+|+|||...
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~--l~~------------~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 11 YRPRTLDEVVGQDEVIQRLKGY--VER------------KNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TSCSSGGGSCSCHHHHHHHHTT--TTT------------TCCCCEEEESSSSSSHHHHH
T ss_pred cCCCCHHHHhCCHHHHHHHHHH--HhC------------CCCCeEEEECcCCcCHHHHH
Confidence 3345677776667777777322 111 11235999999999999764
No 316
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=65.71 E-value=3.3 Score=31.73 Aligned_cols=15 Identities=27% Similarity=0.364 Sum_probs=13.2
Q ss_pred cEEEEcCCCCchHHH
Q 043110 75 DVLVNAATGTGKTVA 89 (316)
Q Consensus 75 d~li~a~TGsGKT~~ 89 (316)
-.++.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 368999999999976
No 317
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=65.27 E-value=1.8 Score=37.97 Aligned_cols=18 Identities=44% Similarity=0.446 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
..++++.||+|+|||...
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 456999999999999764
No 318
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=65.12 E-value=2.9 Score=33.82 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=15.4
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.|.-+.+.+|+|||||...
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556889999999999754
No 319
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=64.99 E-value=4 Score=32.96 Aligned_cols=31 Identities=13% Similarity=0.152 Sum_probs=22.3
Q ss_pred CcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 043110 59 PTKVQAQAIPVILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 59 p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~ 90 (316)
.++.++.. ..+..|.-+++.|+.|||||...
T Consensus 12 ~~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 12 LTRSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CCHHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred cCHHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 34555555 33456778999999999999764
No 320
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=64.97 E-value=3.2 Score=33.19 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCchHHHH
Q 043110 74 RDVLVNAATGTGKTVAY 90 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~ 90 (316)
+-+++.|+.|||||...
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46999999999999864
No 321
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=64.74 E-value=2.4 Score=34.92 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=12.4
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.|+-+.+.||+|+|||...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677899999999999764
No 322
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=64.64 E-value=35 Score=31.77 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=47.0
Q ss_pred CeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHH---HH-hcCCcEEEeCcHHHHHHHhcCCccccC
Q 043110 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA---RL-RKGISILVATPGHLLDHLKHTSSFLHT 185 (316)
Q Consensus 110 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l-~~~~~IlV~Tp~~l~~~l~~~~~~~~~ 185 (316)
+..+||.++|+.-++.+++.+... ...+...+++........ .+ ....+|+|+|.- -..++++.
T Consensus 236 ~~~~IVf~~sr~~~e~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a-------~~~GiD~p 303 (523)
T 1oyw_A 236 GKSGIIYCNSRAKVEDTAARLQSK-----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVA-------FGMGINKP 303 (523)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTT-------SCTTTCCT
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHC-----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech-------hhCCCCcc
Confidence 345999999999999998888764 244566677766544332 22 234789999951 12345666
Q ss_pred ceeEEEE
Q 043110 186 NLRWIIF 192 (316)
Q Consensus 186 ~l~~lVi 192 (316)
+++++|.
T Consensus 304 ~v~~VI~ 310 (523)
T 1oyw_A 304 NVRFVVH 310 (523)
T ss_dssp TCCEEEE
T ss_pred CccEEEE
Confidence 7777765
No 323
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=64.55 E-value=60 Score=29.20 Aligned_cols=69 Identities=16% Similarity=0.203 Sum_probs=47.6
Q ss_pred EEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHH---Hh-cCCcEEEeCcHHHHHHHhcCCccccCcee
Q 043110 113 ALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKAR---LR-KGISILVATPGHLLDHLKHTSSFLHTNLR 188 (316)
Q Consensus 113 ~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~-~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~ 188 (316)
+||.++++.-|..+++.+... ...+..++|+....+.... +. ...+|+|+|. .+ ..++++.+++
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~--~rGlDi~~v~ 370 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK-----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VA--SRGLDIKNIK 370 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GG--TSSCCCTTCC
T ss_pred EEEEEeCcHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hh--hCCCCcccCC
Confidence 999999999999888887663 2445667777665544332 23 3478999995 12 2566777888
Q ss_pred EEEEe
Q 043110 189 WIIFD 193 (316)
Q Consensus 189 ~lViD 193 (316)
++|.-
T Consensus 371 ~VI~~ 375 (434)
T 2db3_A 371 HVINY 375 (434)
T ss_dssp EEEES
T ss_pred EEEEE
Confidence 88753
No 324
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=64.25 E-value=3.5 Score=39.52 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=14.5
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
++++.||+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999753
No 325
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=64.04 E-value=3.3 Score=38.02 Aligned_cols=54 Identities=19% Similarity=0.164 Sum_probs=32.0
Q ss_pred ccCCcccCCCCHHHHHHHHHHcCC--CCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 043110 33 ASCCFSSLGLDSTLCDQLRERLGF--EAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~g~--~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~ 90 (316)
...+|++++-...+.+.|.+...+ ..|..++ ......+.+++.||+|+|||...
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTS----GGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhh----ccCCCCceEEEECCCCCCHHHHH
Confidence 345788887777777777443211 0111011 01123467999999999999864
No 326
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=63.93 E-value=3.5 Score=32.54 Aligned_cols=17 Identities=18% Similarity=0.460 Sum_probs=14.1
Q ss_pred CcEEEEcCCCCchHHHH
Q 043110 74 RDVLVNAATGTGKTVAY 90 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~ 90 (316)
.-+++.+|+|+|||...
T Consensus 3 ~ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 34788999999999864
No 327
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=63.86 E-value=3.7 Score=32.49 Aligned_cols=16 Identities=25% Similarity=0.567 Sum_probs=13.6
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
.+.+.+|+|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999864
No 328
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=63.54 E-value=3.3 Score=35.60 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCchHHHH
Q 043110 74 RDVLVNAATGTGKTVAY 90 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~ 90 (316)
.-+++.||+|||||...
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34899999999999864
No 329
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=63.52 E-value=3.3 Score=32.60 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
+.-+++.|++|||||...
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345899999999999865
No 330
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=63.43 E-value=44 Score=29.44 Aligned_cols=71 Identities=14% Similarity=0.114 Sum_probs=48.3
Q ss_pred eeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHH---Hh-cCCcEEEeCcHHHHHHHhcCCccccCc
Q 043110 111 TFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKAR---LR-KGISILVATPGHLLDHLKHTSSFLHTN 186 (316)
Q Consensus 111 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~-~~~~IlV~Tp~~l~~~l~~~~~~~~~~ 186 (316)
.++||.++++.-+..+++.+... ...+..++|+....+.... +. ...+|+|+|.- + ..++++.+
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~--~~Gidi~~ 344 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA-----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDV-----W--ARGLDVPQ 344 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGG-----G--SSSCCCTT
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC-----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECCh-----h--hCcCCccc
Confidence 36999999999999888887763 2445667777665443322 22 34789999951 2 25667778
Q ss_pred eeEEEEe
Q 043110 187 LRWIIFD 193 (316)
Q Consensus 187 l~~lViD 193 (316)
++++|.-
T Consensus 345 v~~Vi~~ 351 (410)
T 2j0s_A 345 VSLIINY 351 (410)
T ss_dssp EEEEEES
T ss_pred CCEEEEE
Confidence 8888753
No 331
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=63.35 E-value=3.2 Score=32.73 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
+.-+++.|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 446899999999999864
No 332
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=63.35 E-value=3.5 Score=32.28 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=13.6
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
-.++.+++|+|||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4689999999999764
No 333
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=63.28 E-value=3.6 Score=34.94 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=31.8
Q ss_pred ccCCcccCCCCHHHHHHHHHHc-CCCCCcHHHHHHHHHHh--CCCcEEEEcCCCCchHHHH
Q 043110 33 ASCCFSSLGLDSTLCDQLRERL-GFEAPTKVQAQAIPVIL--SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~-g~~~p~~~Q~~~i~~il--~g~d~li~a~TGsGKT~~~ 90 (316)
...+|+++.-.+.+.+.+.+-. .+.. ...+..+- -.+.+++.+|+|+|||...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~-----~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKN-----PSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHC-----HHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHC-----HHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 4567999988787777763211 0111 12222221 1234999999999999764
No 334
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=63.26 E-value=3.7 Score=36.00 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCchHHHHH
Q 043110 74 RDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~ 91 (316)
..+++.||+|+|||...-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 569999999999998753
No 335
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=62.94 E-value=5.3 Score=36.94 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=18.3
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHh
Q 043110 73 GRDVLVNAATGTGKTVAYLAPIINHL 98 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~~lp~l~~l 98 (316)
..++++.||+|+|||...-. +...+
T Consensus 201 ~~~~LL~G~pG~GKT~la~~-la~~l 225 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEG-LAQQI 225 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHH-HHHHH
T ss_pred CCCeEEECCCCCCHHHHHHH-HHHHH
Confidence 45799999999999987532 33444
No 336
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=62.76 E-value=3.3 Score=33.36 Aligned_cols=19 Identities=21% Similarity=0.148 Sum_probs=15.2
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.|.-+.+.||+|||||...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CcEEEEEECCCCCCHHHHH
Confidence 3445789999999999764
No 337
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=62.52 E-value=4.2 Score=33.81 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=24.9
Q ss_pred CceeEEEEecchhhhcCCcHHHHHHHHHHhc
Q 043110 185 TNLRWIIFDEADRILELGFGKEIEEILDILG 215 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~~~i~~i~~~l~ 215 (316)
.+-+++++||--.-+|......+..++..+.
T Consensus 162 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 192 (235)
T 3tif_A 162 NNPPIILADQPTWALDSKTGEKIMQLLKKLN 192 (235)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 3567999999999998877777777777764
No 338
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=62.50 E-value=3.2 Score=33.15 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
+.-+++.++.|||||...
T Consensus 20 ~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346899999999999864
No 339
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=62.38 E-value=3.5 Score=32.96 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=15.9
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.+.-+++.|+.|||||...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 4556899999999999864
No 340
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=62.32 E-value=11 Score=34.36 Aligned_cols=53 Identities=13% Similarity=0.011 Sum_probs=36.6
Q ss_pred eeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHh-cCCcEEEeCc
Q 043110 111 TFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLR-KGISILVATP 169 (316)
Q Consensus 111 ~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~IlV~Tp 169 (316)
.++||.+|+++-++.+++.++.. ...+..++|+ ........+. ...+|+|+|.
T Consensus 172 ~~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~-~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 172 GRTVWFVHSIKQGAEIGTCLQKA-----GKKVLYLNRK-TFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTT-THHHHTTHHHHSCCSEEEECG
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc-----CCeEEEeCCc-cHHHHHHhhcCCCCeEEEECc
Confidence 46999999999999988888764 2445556654 3333333443 3479999994
No 341
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=62.20 E-value=25 Score=31.86 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=26.3
Q ss_pred CCcHHHHHHHHHHh---CCCcEEEEcCCCCchHHHHH
Q 043110 58 APTKVQAQAIPVIL---SGRDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 58 ~p~~~Q~~~i~~il---~g~d~li~a~TGsGKT~~~~ 91 (316)
+|-..=.++|..++ .|+.+.+.+|+|+|||....
T Consensus 156 ~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 156 STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp CTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHH
T ss_pred CcccccceeeeeeeeecCCcEEEEecCCCCChhHHHH
Confidence 34455567777765 68899999999999998753
No 342
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=62.03 E-value=6.3 Score=37.75 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=19.3
Q ss_pred HHHhCCCcEEEEcCCCCchHHHH
Q 043110 68 PVILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 68 ~~il~g~d~li~a~TGsGKT~~~ 90 (316)
..+..|..+++.+|+|+|||..+
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHH
Confidence 44557889999999999999864
No 343
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=61.89 E-value=2.1 Score=42.60 Aligned_cols=54 Identities=22% Similarity=0.351 Sum_probs=34.0
Q ss_pred cCCcccCCCCHHHHHHHHHHcCC--CCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 043110 34 SCCFSSLGLDSTLCDQLRERLGF--EAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 34 ~~~f~~~~l~~~l~~~l~~~~g~--~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~ 90 (316)
..+|++++...++.+.|.+...+ ..|..++..- +...+.+++.+|.|+|||+.+
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHHH
Confidence 45799999889999988543322 2221111100 012346999999999999764
No 344
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=61.73 E-value=11 Score=34.33 Aligned_cols=68 Identities=10% Similarity=-0.000 Sum_probs=41.2
Q ss_pred CeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHh-cCCcEEEeCcHHHHHHHhcCCccccCcee
Q 043110 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLR-KGISILVATPGHLLDHLKHTSSFLHTNLR 188 (316)
Q Consensus 110 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~IlV~Tp~~l~~~l~~~~~~~~~~l~ 188 (316)
+.++||.||+++-+..+++.++.. ...+..++|.. .......+. ...+|+|+|.- +. .++++. ++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~~-R~~~~~~F~~g~~~vLVaT~v-----~e--~GiDip-v~ 242 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA-----GKSVVVLNRKT-FEREYPTIKQKKPDFILATDI-----AE--MGANLC-VE 242 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT-----TCCEEECCSSS-CC--------CCCSEEEESSS-----TT--CCTTCC-CS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-----CCCEEEecchh-HHHHHhhhcCCCceEEEECCh-----hh--eeeccC-ce
Confidence 356999999999999998888764 24455566633 323333343 34789999941 11 445556 77
Q ss_pred EEE
Q 043110 189 WII 191 (316)
Q Consensus 189 ~lV 191 (316)
++|
T Consensus 243 ~VI 245 (440)
T 1yks_A 243 RVL 245 (440)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 345
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=61.72 E-value=3.9 Score=31.98 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=15.7
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.|.-+++.++.|||||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4566889999999999764
No 346
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=61.60 E-value=4.4 Score=31.25 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCchHHHHH
Q 043110 74 RDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~ 91 (316)
+++++.++.|||||...-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 578999999999998753
No 347
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=61.46 E-value=4.7 Score=31.35 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCchHHHH
Q 043110 74 RDVLVNAATGTGKTVAY 90 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~ 90 (316)
+.+++.++.|||||...
T Consensus 5 ~~i~i~G~~GsGKsTla 21 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 36899999999999864
No 348
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=61.34 E-value=2.1 Score=34.44 Aligned_cols=21 Identities=19% Similarity=0.034 Sum_probs=16.5
Q ss_pred HhCCCcEEEEcCCCCchHHHH
Q 043110 70 ILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 70 il~g~d~li~a~TGsGKT~~~ 90 (316)
+..+.-+.+.|++|||||...
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 334556889999999999764
No 349
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=61.23 E-value=4.1 Score=32.21 Aligned_cols=19 Identities=16% Similarity=0.345 Sum_probs=16.0
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.+.-+++.|+.|||||...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999864
No 350
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=60.98 E-value=4 Score=36.41 Aligned_cols=16 Identities=25% Similarity=0.522 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
-.++.+|||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4779999999999765
No 351
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=60.94 E-value=7.4 Score=34.84 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=17.4
Q ss_pred CCCcEEEEcCCCCchHHHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAYLA 92 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~l 92 (316)
.+.++++.++||+|||...-.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~ 54 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM 54 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHH
Confidence 567899999999999986544
No 352
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=60.64 E-value=4.3 Score=32.77 Aligned_cols=16 Identities=19% Similarity=0.410 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999864
No 353
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=60.64 E-value=5.1 Score=31.36 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCchHHHH
Q 043110 74 RDVLVNAATGTGKTVAY 90 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~ 90 (316)
..+++.++.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999999864
No 354
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=60.53 E-value=4.9 Score=32.60 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
+..+++.|+.|||||...
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999864
No 355
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=60.51 E-value=12 Score=29.39 Aligned_cols=24 Identities=17% Similarity=0.008 Sum_probs=16.3
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHhh
Q 043110 75 DVLVNAATGTGKTVAYLAPIINHLQ 99 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~lp~l~~l~ 99 (316)
-+.+.++.|||||... .-++..+.
T Consensus 6 ~i~i~G~sGsGKTTl~-~~L~~~l~ 29 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM-EKWVAAAV 29 (169)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHhhH
Confidence 3678999999999753 33444443
No 356
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=60.48 E-value=4.9 Score=36.97 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
.+++++.+|+|+|||...
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999864
No 357
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=60.39 E-value=4.5 Score=33.09 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=15.5
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.+..+++.|++|||||...
T Consensus 6 ~~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp -CCEEEEEECTTSSHHHHH
T ss_pred cCcEEEEECCCCCCHHHHH
Confidence 3456899999999999864
No 358
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=60.35 E-value=4.8 Score=33.12 Aligned_cols=19 Identities=21% Similarity=0.344 Sum_probs=16.0
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.+..+++.++.|||||...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4467999999999999864
No 359
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=60.11 E-value=4.9 Score=32.55 Aligned_cols=20 Identities=25% Similarity=0.094 Sum_probs=16.3
Q ss_pred CCCcEEEEcCCCCchHHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~ 91 (316)
.|.-+.+.+|+|+|||....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45668999999999997643
No 360
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=59.93 E-value=4.5 Score=32.82 Aligned_cols=17 Identities=18% Similarity=0.390 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCchHHHH
Q 043110 74 RDVLVNAATGTGKTVAY 90 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~ 90 (316)
..+.+.|++|||||...
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999864
No 361
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=59.92 E-value=4.3 Score=31.78 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=13.7
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
-+++.|+.|||||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999764
No 362
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=59.85 E-value=5.3 Score=34.73 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=16.5
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.|.-+.+.+|+|+|||...
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp TCSEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 6778999999999999764
No 363
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=59.49 E-value=5.3 Score=30.74 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCchHHHH
Q 043110 74 RDVLVNAATGTGKTVAY 90 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~ 90 (316)
+.+++.++.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45899999999999864
No 364
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=59.22 E-value=4.5 Score=31.80 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=16.2
Q ss_pred CCCcEEEEcCCCCchHHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~ 91 (316)
.|.-+++.++.|||||...-
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35568999999999998653
No 365
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=59.16 E-value=7.4 Score=31.09 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
|.-+.+.+|+|+|||...
T Consensus 1 G~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCCEEEESCCSSCHHHHH
T ss_pred CCEEEEECCCCChHHHHH
Confidence 455789999999999864
No 366
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=59.11 E-value=9.1 Score=35.79 Aligned_cols=53 Identities=21% Similarity=0.203 Sum_probs=30.7
Q ss_pred cccCCcccCCCCHHHHHHHHHHc---------CCCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 043110 32 FASCCFSSLGLDSTLCDQLRERL---------GFEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 32 ~~~~~f~~~~l~~~l~~~l~~~~---------g~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~ 90 (316)
+...+|+++.-.+...+.|.+.+ ++..+-. ...-..+.+++.||+|+|||...
T Consensus 33 yrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~------~~~~~~~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 33 YAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGK------DGSGVFRAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCT------TSTTSCSEEEEECSTTSSHHHHH
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCc------cCCCCCcEEEEECCCCCCHHHHH
Confidence 44457888877777666663321 1111100 00002357999999999999875
No 367
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=59.04 E-value=5.2 Score=33.25 Aligned_cols=18 Identities=33% Similarity=0.392 Sum_probs=15.7
Q ss_pred CCCcEEEEcCCCCchHHH
Q 043110 72 SGRDVLVNAATGTGKTVA 89 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~ 89 (316)
.|.-+.+.+|+|+|||..
T Consensus 30 ~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567789999999999975
No 368
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=58.86 E-value=4.8 Score=32.50 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999864
No 369
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=58.83 E-value=30 Score=34.12 Aligned_cols=76 Identities=7% Similarity=0.012 Sum_probs=50.3
Q ss_pred CeeEEEEeCChHHHHHHHHHHHHHHhhc------CCceeEEeeCCCChHHHHHHHhc---------CCcEEEeCcHHHHH
Q 043110 110 GTFALVLVPTSELCLLVYEILQKLLHRF------RWIVPGYVMGGGNRSKEKARLRK---------GISILVATPGHLLD 174 (316)
Q Consensus 110 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~---------~~~IlV~Tp~~l~~ 174 (316)
+..+||.+|++.-+..+++.+....... ....+..++++....++...+.. ...|||+|.- +
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~i-a-- 379 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNI-A-- 379 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTH-H--
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcH-H--
Confidence 4469999999999999998887643222 44566777888776665544332 3479999941 1
Q ss_pred HHhcCCccccCceeEEEE
Q 043110 175 HLKHTSSFLHTNLRWIIF 192 (316)
Q Consensus 175 ~l~~~~~~~~~~l~~lVi 192 (316)
. .++.+.++++||-
T Consensus 380 --e--~GidIp~v~~VId 393 (773)
T 2xau_A 380 --E--TSLTIDGIVYVVD 393 (773)
T ss_dssp --H--HTCCCTTEEEEEE
T ss_pred --H--hCcCcCCeEEEEe
Confidence 1 3445567776653
No 370
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=58.76 E-value=5.3 Score=32.45 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
+..+++.|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999864
No 371
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=58.45 E-value=4.7 Score=31.60 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=14.0
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
-+++.|+.|||||...
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999864
No 372
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=58.42 E-value=6 Score=32.37 Aligned_cols=31 Identities=6% Similarity=0.029 Sum_probs=26.1
Q ss_pred CceeEEEEecchhhhcCCcHHHHHHHHHHhc
Q 043110 185 TNLRWIIFDEADRILELGFGKEIEEILDILG 215 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~~~i~~i~~~l~ 215 (316)
.+-+++++||--.-+|......+..++..+.
T Consensus 150 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~ 180 (214)
T 1sgw_A 150 VNAEIYVLDDPVVAIDEDSKHKVLKSILEIL 180 (214)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHH
T ss_pred hCCCEEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence 4668999999999999888888888887775
No 373
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=58.00 E-value=4.5 Score=45.63 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=17.9
Q ss_pred HhCCCcEEEEcCCCCchHHHH
Q 043110 70 ILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 70 il~g~d~li~a~TGsGKT~~~ 90 (316)
+..++.+++.||||+|||+..
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 346789999999999999864
No 374
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=57.94 E-value=4.6 Score=36.05 Aligned_cols=15 Identities=27% Similarity=0.583 Sum_probs=0.0
Q ss_pred EEEEcCCCCchHHHH
Q 043110 76 VLVNAATGTGKTVAY 90 (316)
Q Consensus 76 ~li~a~TGsGKT~~~ 90 (316)
.++.|+||+|||...
T Consensus 28 ~vi~G~NGaGKT~il 42 (371)
T 3auy_A 28 VAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 375
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=57.86 E-value=11 Score=32.86 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=13.5
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
-+.+.+++|+|||...
T Consensus 107 vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSL 122 (320)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788899999999764
No 376
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=57.74 E-value=5.3 Score=31.94 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=16.3
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.|.-+++.|+.|||||...
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 4667999999999999875
No 377
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=57.65 E-value=5.7 Score=33.24 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=16.0
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.|.-+.+.+|+|||||...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567899999999999764
No 378
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=57.64 E-value=5 Score=32.03 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=13.7
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
.+.+.|+.|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999864
No 379
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=57.35 E-value=5.3 Score=31.82 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=14.0
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
-+++.|+.|||||...
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999864
No 380
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=56.98 E-value=5.5 Score=31.51 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=13.6
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
.+++.|+.|||||...
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3789999999999864
No 381
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=56.98 E-value=6.1 Score=32.63 Aligned_cols=18 Identities=39% Similarity=0.538 Sum_probs=15.8
Q ss_pred CCCcEEEEcCCCCchHHH
Q 043110 72 SGRDVLVNAATGTGKTVA 89 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~ 89 (316)
.|.-+.+.+|+|+|||..
T Consensus 33 ~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577789999999999975
No 382
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=56.95 E-value=5.7 Score=31.81 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=16.8
Q ss_pred CCCcEEEEcCCCCchHHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAYL 91 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~ 91 (316)
.+.-+++.|+.|||||...-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46679999999999998753
No 383
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=56.69 E-value=5.5 Score=31.84 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=13.5
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
-+.+.|+.|||||...
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999864
No 384
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=56.56 E-value=5.2 Score=37.15 Aligned_cols=54 Identities=22% Similarity=0.374 Sum_probs=30.5
Q ss_pred cCCcccCCCCHHHHHHHHHHcC-CCCCcHHHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 043110 34 SCCFSSLGLDSTLCDQLRERLG-FEAPTKVQAQAIPVILSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 34 ~~~f~~~~l~~~l~~~l~~~~g-~~~p~~~Q~~~i~~il~g~d~li~a~TGsGKT~~~ 90 (316)
..+|+++.=.++.++.+.+... +..|..++... +.-.+.+++.+|+|+|||+..
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g---~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIG---ARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTT---CCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcC---CCCCCeEEEECCCCCCHHHHH
Confidence 4578888766666666633211 11222111100 011246999999999999874
No 385
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=56.42 E-value=5.9 Score=30.34 Aligned_cols=16 Identities=13% Similarity=0.133 Sum_probs=13.7
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
.+++.++.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999864
No 386
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=56.39 E-value=6.1 Score=33.07 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=24.5
Q ss_pred CceeEEEEecchhhhcCCcHHHHHHHHHHhc
Q 043110 185 TNLRWIIFDEADRILELGFGKEIEEILDILG 215 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~~~i~~i~~~l~ 215 (316)
.+-+++++||.-.-+|......+..++..+.
T Consensus 162 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 192 (247)
T 2ff7_A 162 NNPKILIFDEATSALDYESEHVIMRNMHKIC 192 (247)
T ss_dssp TCCSEEEECCCCSCCCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHc
Confidence 3557999999999888877777777777763
No 387
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=56.13 E-value=6.2 Score=33.73 Aligned_cols=31 Identities=23% Similarity=0.139 Sum_probs=24.4
Q ss_pred CceeEEEEecchhhhcCCcHHHHHHHHHHhc
Q 043110 185 TNLRWIIFDEADRILELGFGKEIEEILDILG 215 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~~~i~~i~~~l~ 215 (316)
.+-+++++||--.-+|......+..++..+.
T Consensus 160 ~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~ 190 (275)
T 3gfo_A 160 MEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190 (275)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence 3567999999999888777777777777764
No 388
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=56.12 E-value=6.1 Score=32.71 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
+.-+++.|+.|||||...
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457999999999999764
No 389
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=55.86 E-value=57 Score=29.04 Aligned_cols=75 Identities=17% Similarity=0.131 Sum_probs=45.9
Q ss_pred CeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeC--------CCChHH---HHHHHh-cCCcEEEeCcHHHHHHHh
Q 043110 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMG--------GGNRSK---EKARLR-KGISILVATPGHLLDHLK 177 (316)
Q Consensus 110 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~---~~~~l~-~~~~IlV~Tp~~l~~~l~ 177 (316)
+.++||.+++++-+..+++.+... ...+..+.| +..... ....+. ...+|+|+|. .+
T Consensus 361 ~~k~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-~~----- 429 (494)
T 1wp9_A 361 NSKIIVFTNYRETAKKIVNELVKD-----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-VG----- 429 (494)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHT-----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-GG-----
T ss_pred CCeEEEEEccHHHHHHHHHHHHHc-----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-cc-----
Confidence 445999999999999888888764 234445555 332222 222333 3478999993 11
Q ss_pred cCCccccCceeEEEEecch
Q 043110 178 HTSSFLHTNLRWIIFDEAD 196 (316)
Q Consensus 178 ~~~~~~~~~l~~lViDEad 196 (316)
..++++..++++|+-+..
T Consensus 430 -~~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 430 -EEGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp -GGGGGSTTCCEEEESSCC
T ss_pred -ccCCCchhCCEEEEeCCC
Confidence 145666778888865443
No 390
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=55.80 E-value=6.3 Score=33.28 Aligned_cols=30 Identities=23% Similarity=0.291 Sum_probs=23.9
Q ss_pred ceeEEEEecchhhhcCCcHHHHHHHHHHhc
Q 043110 186 NLRWIIFDEADRILELGFGKEIEEILDILG 215 (316)
Q Consensus 186 ~l~~lViDEad~l~~~~~~~~i~~i~~~l~ 215 (316)
+-+++++||.-.-+|......+..++..+.
T Consensus 173 ~p~lllLDEPts~LD~~~~~~i~~~l~~l~ 202 (260)
T 2ghi_A 173 DPKIVIFDEATSSLDSKTEYLFQKAVEDLR 202 (260)
T ss_dssp CCSEEEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHhc
Confidence 457999999999888877777777777764
No 391
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=55.70 E-value=5.4 Score=33.52 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
+.-+++.|+.|||||...
T Consensus 4 ~~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFS 21 (260)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CEEEEEEcCCCCCHHHHH
Confidence 345899999999999864
No 392
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=55.66 E-value=7.9 Score=38.12 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
..++++.||+|+|||...
T Consensus 201 ~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 457999999999999875
No 393
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=55.56 E-value=6.2 Score=32.43 Aligned_cols=32 Identities=16% Similarity=0.147 Sum_probs=25.3
Q ss_pred CceeEEEEecchhhhcCCcHHHHHHHHHHhcc
Q 043110 185 TNLRWIIFDEADRILELGFGKEIEEILDILGS 216 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~ 216 (316)
.+-+++++||--.-+|......+..++..+..
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~ 188 (224)
T 2pcj_A 157 NEPILLFADEPTGNLDSANTKRVMDIFLKINE 188 (224)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 45679999999998888777777777777643
No 394
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=55.47 E-value=6.1 Score=31.89 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=13.6
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
-.++.+|+|+|||...
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4688999999999763
No 395
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=55.33 E-value=7.1 Score=32.42 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=15.8
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.+..+++.|+.|||||...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456999999999999864
No 396
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=55.22 E-value=9 Score=30.19 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=29.4
Q ss_pred eeEEEEecchhhhcCCcHHHHHHHHHHhccCcccccCCCCccccccceEEEEee
Q 043110 187 LRWIIFDEADRILELGFGKEIEEILDILGSRNIASIGEGNEVSNVKRQNLLLSA 240 (316)
Q Consensus 187 l~~lViDEad~l~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~q~i~~SA 240 (316)
-.++++||.+.-+|......+..++..+.. ..|++++|-
T Consensus 87 ~~~llLDEp~a~LD~~~~~~~~~~l~~~~~---------------~~~~ivith 125 (173)
T 3kta_B 87 APFYLFDEIDAHLDDANVKRVADLIKESSK---------------ESQFIVITL 125 (173)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHTT---------------TSEEEEECS
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHhcc---------------CCEEEEEEe
Confidence 468999999999997666777777776654 567777653
No 397
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=55.17 E-value=31 Score=29.63 Aligned_cols=73 Identities=21% Similarity=0.240 Sum_probs=47.4
Q ss_pred CeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHH---HHh-cCCcEEEeCcHHHHHHHhcCCccccC
Q 043110 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA---RLR-KGISILVATPGHLLDHLKHTSSFLHT 185 (316)
Q Consensus 110 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~-~~~~IlV~Tp~~l~~~l~~~~~~~~~ 185 (316)
+.++||.+++++-+..+++.++..+ ..+..++++........ .+. ...+|+|+|. .+. .++++.
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~~-----~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~~------~Gid~~ 305 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDIG-----FKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-VMS------RGIDVN 305 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTT-----CCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-THH------HHCCCS
T ss_pred CCcEEEEECCHHHHHHHHHHHHhcC-----CCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-hhh------cCCCcc
Confidence 4569999999999999888887642 34556667666544332 222 3468999994 221 244556
Q ss_pred ceeEEEEec
Q 043110 186 NLRWIIFDE 194 (316)
Q Consensus 186 ~l~~lViDE 194 (316)
+++++|.-+
T Consensus 306 ~~~~Vi~~~ 314 (367)
T 1hv8_A 306 DLNCVINYH 314 (367)
T ss_dssp CCSEEEESS
T ss_pred cCCEEEEec
Confidence 777777543
No 398
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=55.09 E-value=6.1 Score=31.10 Aligned_cols=16 Identities=19% Similarity=0.405 Sum_probs=13.6
Q ss_pred EEEEcCCCCchHHHHH
Q 043110 76 VLVNAATGTGKTVAYL 91 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~ 91 (316)
+++.|+.|||||...-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999998753
No 399
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=54.96 E-value=6.4 Score=34.15 Aligned_cols=18 Identities=50% Similarity=0.684 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
|.-+.+.+|+|+|||...
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 455888999999999764
No 400
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=54.83 E-value=6.2 Score=30.90 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=13.2
Q ss_pred EEEEcCCCCchHHHH
Q 043110 76 VLVNAATGTGKTVAY 90 (316)
Q Consensus 76 ~li~a~TGsGKT~~~ 90 (316)
+++.|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999864
No 401
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=54.70 E-value=6.8 Score=32.58 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=25.1
Q ss_pred CceeEEEEecchhhhcCCcHHHHHHHHHHhc
Q 043110 185 TNLRWIIFDEADRILELGFGKEIEEILDILG 215 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~~~i~~i~~~l~ 215 (316)
.+-+++++||--.-+|......+..++..+.
T Consensus 156 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~ 186 (240)
T 1ji0_A 156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKIN 186 (240)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 3567999999999999877777877777764
No 402
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=54.66 E-value=6.9 Score=33.20 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=24.7
Q ss_pred ceeEEEEecchhhhcCCcHHHHHHHHHHhcc
Q 043110 186 NLRWIIFDEADRILELGFGKEIEEILDILGS 216 (316)
Q Consensus 186 ~l~~lViDEad~l~~~~~~~~i~~i~~~l~~ 216 (316)
+-+++++||--.-+|......+..++..+..
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~~ 195 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLTR 195 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHH
Confidence 5689999999888887777777777777653
No 403
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=54.53 E-value=6.8 Score=32.96 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=25.4
Q ss_pred CceeEEEEecchhhhcCCcHHHHHHHHHHhcc
Q 043110 185 TNLRWIIFDEADRILELGFGKEIEEILDILGS 216 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~ 216 (316)
.+-+++++||--.-+|......+..++..+..
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~ 201 (257)
T 1g6h_A 170 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA 201 (257)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence 35679999999998988777778777777643
No 404
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=54.09 E-value=5.9 Score=34.31 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
|.-+.+.+|+|+|||...
T Consensus 100 g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 345789999999999864
No 405
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=54.08 E-value=5.9 Score=33.00 Aligned_cols=30 Identities=27% Similarity=0.323 Sum_probs=24.1
Q ss_pred ceeEEEEecchhhhcCCcHHHHHHHHHHhc
Q 043110 186 NLRWIIFDEADRILELGFGKEIEEILDILG 215 (316)
Q Consensus 186 ~l~~lViDEad~l~~~~~~~~i~~i~~~l~ 215 (316)
+-+++++||.-.-+|......+..++..+.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 186 (243)
T 1mv5_A 157 NPKILMLDEATASLDSESESMVQKALDSLM 186 (243)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhc
Confidence 457999999999999877777777777664
No 406
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=54.02 E-value=7.1 Score=32.98 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=25.4
Q ss_pred CceeEEEEecchhhhcCCcHHHHHHHHHHhcc
Q 043110 185 TNLRWIIFDEADRILELGFGKEIEEILDILGS 216 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~ 216 (316)
.+-+++++||--.-+|......+..++..+..
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~ 201 (262)
T 1b0u_A 170 MEPDVLLFDEPTSALDPELVGEVLRIMQQLAE 201 (262)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh
Confidence 35679999999998988777777777777643
No 407
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=53.83 E-value=4.8 Score=31.37 Aligned_cols=19 Identities=26% Similarity=0.330 Sum_probs=11.5
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.+.-+++.|+.|||||...
T Consensus 4 ~~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp -CCEEEEECCC----CHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556899999999999864
No 408
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=53.56 E-value=6.8 Score=31.75 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
+..+++.++.|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999864
No 409
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=53.45 E-value=7.3 Score=32.62 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=25.1
Q ss_pred ceeEEEEecchhhhcCCcHHHHHHHHHHhcc
Q 043110 186 NLRWIIFDEADRILELGFGKEIEEILDILGS 216 (316)
Q Consensus 186 ~l~~lViDEad~l~~~~~~~~i~~i~~~l~~ 216 (316)
+-+++++||--.-+|......+..++..+..
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~ 191 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAMRG 191 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHHCS
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence 4579999999999998777788888877753
No 410
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=53.25 E-value=7.5 Score=32.96 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=23.9
Q ss_pred ceeEEEEecchhhhcCCcHHHHHHHHHHhc
Q 043110 186 NLRWIIFDEADRILELGFGKEIEEILDILG 215 (316)
Q Consensus 186 ~l~~lViDEad~l~~~~~~~~i~~i~~~l~ 215 (316)
+-+++++||--.-+|......+..++..+.
T Consensus 182 ~p~lLlLDEPts~LD~~~~~~l~~~l~~l~ 211 (267)
T 2zu0_C 182 EPELCILDESDSGLDIDALKVVADGVNSLR 211 (267)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 457999999999999777777777777664
No 411
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=53.18 E-value=6.7 Score=30.37 Aligned_cols=19 Identities=32% Similarity=0.344 Sum_probs=15.6
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.|.-+.+.+|.|+|||...
T Consensus 32 ~Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp SCEEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5666889999999999753
No 412
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=53.07 E-value=6.6 Score=31.44 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCchHHHH
Q 043110 74 RDVLVNAATGTGKTVAY 90 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~ 90 (316)
.-+.+.+++|||||...
T Consensus 23 ~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999764
No 413
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=53.03 E-value=7.6 Score=32.56 Aligned_cols=28 Identities=21% Similarity=0.424 Sum_probs=23.4
Q ss_pred EEEEecchhhhcCCcHHHHHHHHHHhcc
Q 043110 189 WIIFDEADRILELGFGKEIEEILDILGS 216 (316)
Q Consensus 189 ~lViDEad~l~~~~~~~~i~~i~~~l~~ 216 (316)
++++||--.-+|......+..++..+..
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l~~ 181 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSALSQ 181 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHh
Confidence 9999999999998777888888877743
No 414
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=52.96 E-value=29 Score=29.88 Aligned_cols=68 Identities=16% Similarity=0.122 Sum_probs=43.2
Q ss_pred eEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHH---Hh-cCCcEEEeCcHHHHHHHhcCCccccCce
Q 043110 112 FALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKAR---LR-KGISILVATPGHLLDHLKHTSSFLHTNL 187 (316)
Q Consensus 112 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~-~~~~IlV~Tp~~l~~~l~~~~~~~~~~l 187 (316)
++||.+++++-+..+.+.+... ...+..++|+......... +. ...+|+|+|.- +. .++.+.++
T Consensus 30 ~~LVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~v-----a~--~Gidi~~v 97 (300)
T 3i32_A 30 RAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDV-----AA--RGLDIPQV 97 (300)
T ss_dssp SEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECST-----TT--CSTTCCCC
T ss_pred CEEEEECCHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEech-----hh--cCccccce
Confidence 4999999999998888777553 2455667777665544333 22 34789999931 11 34444556
Q ss_pred eEEE
Q 043110 188 RWII 191 (316)
Q Consensus 188 ~~lV 191 (316)
+++|
T Consensus 98 ~~VI 101 (300)
T 3i32_A 98 DLVV 101 (300)
T ss_dssp SEEE
T ss_pred eEEE
Confidence 5555
No 415
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=52.91 E-value=7.7 Score=32.70 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=25.5
Q ss_pred CceeEEEEecchhhhcCCcHHHHHHHHHHhcc
Q 043110 185 TNLRWIIFDEADRILELGFGKEIEEILDILGS 216 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~ 216 (316)
.+-+++++||--.-+|......+..++..+..
T Consensus 163 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~ 194 (256)
T 1vpl_A 163 VNPRLAILDEPTSGLDVLNAREVRKILKQASQ 194 (256)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHHh
Confidence 35679999999999998777778777777643
No 416
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=52.65 E-value=6.7 Score=31.03 Aligned_cols=16 Identities=19% Similarity=0.322 Sum_probs=13.9
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
-+.+.+++|||||...
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999864
No 417
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=52.48 E-value=7.6 Score=32.99 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=25.0
Q ss_pred CceeEEEEecchhhhcCCcHHHHHHHHHHhc
Q 043110 185 TNLRWIIFDEADRILELGFGKEIEEILDILG 215 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~~~i~~i~~~l~ 215 (316)
.+-+++++||.-.-+|......+..++..+.
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 203 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYESP 203 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHCT
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence 3567999999999999877777777777764
No 418
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=52.44 E-value=20 Score=38.76 Aligned_cols=40 Identities=23% Similarity=0.237 Sum_probs=27.8
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCCh
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTS 120 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~ 120 (316)
.|..+++.+++|+|||...+--+.+.+.. +-.++|+.-..
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~~---------G~~vlYI~te~ 72 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---------GKTCAFIDAEH 72 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---------TCCEEEECTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhC---------CCceEEEEecC
Confidence 36789999999999998765544444433 33488887443
No 419
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=52.43 E-value=7.7 Score=32.58 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=25.6
Q ss_pred CceeEEEEecchhhhcCCcHHHHHHHHHHhcc
Q 043110 185 TNLRWIIFDEADRILELGFGKEIEEILDILGS 216 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~ 216 (316)
.+-+++++||--.-+|......+..++..+..
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~ 176 (253)
T 2nq2_C 145 SECKLILLDEPTSALDLANQDIVLSLLIDLAQ 176 (253)
T ss_dssp TTCSEEEESSSSTTSCHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 35679999999999998777788888777753
No 420
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=52.26 E-value=7.8 Score=32.81 Aligned_cols=31 Identities=16% Similarity=0.092 Sum_probs=25.5
Q ss_pred CceeEEEEecchhhhcCCcHHHHHHHHHHhc
Q 043110 185 TNLRWIIFDEADRILELGFGKEIEEILDILG 215 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~~~i~~i~~~l~ 215 (316)
.+-+++++||--.-+|......+..++..+.
T Consensus 155 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 185 (266)
T 2yz2_A 155 HEPDILILDEPLVGLDREGKTDLLRIVEKWK 185 (266)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHH
Confidence 3567999999999999877788888877774
No 421
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=52.15 E-value=7.3 Score=31.44 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCchHHHH
Q 043110 74 RDVLVNAATGTGKTVAY 90 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~ 90 (316)
.-+.+.++.|||||...
T Consensus 5 ~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35889999999999864
No 422
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=51.75 E-value=6.9 Score=31.57 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=13.7
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999864
No 423
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=51.66 E-value=8.2 Score=32.67 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=25.7
Q ss_pred CceeEEEEecchhhhcCCcHHHHHHHHHHhcc
Q 043110 185 TNLRWIIFDEADRILELGFGKEIEEILDILGS 216 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~~~i~~i~~~l~~ 216 (316)
.+-+++++||--.-+|......+..++..+..
T Consensus 176 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~ 207 (263)
T 2olj_A 176 MEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 207 (263)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 35679999999999998777778888777753
No 424
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=51.60 E-value=4.7 Score=33.71 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCchHHHH
Q 043110 74 RDVLVNAATGTGKTVAY 90 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~ 90 (316)
..+++.|++|||||...
T Consensus 33 ~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEEESCGGGTTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45899999999999864
No 425
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=51.47 E-value=7.6 Score=31.67 Aligned_cols=16 Identities=25% Similarity=0.484 Sum_probs=13.7
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999864
No 426
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=51.29 E-value=8.3 Score=32.94 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=24.2
Q ss_pred CceeEEEEecchhhhcCCcHHHHHHHHHHhc
Q 043110 185 TNLRWIIFDEADRILELGFGKEIEEILDILG 215 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~~~i~~i~~~l~ 215 (316)
.+-+++++||--.-+|......+..++..+.
T Consensus 178 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~ 208 (279)
T 2ihy_A 178 GQPQVLILDEPAAGLDFIARESLLSILDSLS 208 (279)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence 3567999999999888777777777777664
No 427
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=50.88 E-value=6.7 Score=39.01 Aligned_cols=19 Identities=37% Similarity=0.566 Sum_probs=16.3
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.++.+++.+|+|+|||...
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4667999999999999764
No 428
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=50.82 E-value=7.7 Score=33.37 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=13.6
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
-+.+.|++|||||...
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999764
No 429
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=50.68 E-value=12 Score=36.78 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=14.8
Q ss_pred cEEEEcCCCCchHHHHH
Q 043110 75 DVLVNAATGTGKTVAYL 91 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~ 91 (316)
.+++.||||+|||...-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999998753
No 430
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=50.68 E-value=78 Score=24.85 Aligned_cols=62 Identities=15% Similarity=-0.067 Sum_probs=16.4
Q ss_pred hCCCcEEEEcCCCCchHHHHHHHHHHHhhhcCC----CCCCCCCeeEEEEeCChHHHHHHHHHHHH
Q 043110 71 LSGRDVLVNAATGTGKTVAYLAPIINHLQSYSP----RIDRSSGTFALVLVPTSELCLLVYEILQK 132 (316)
Q Consensus 71 l~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~----~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 132 (316)
+.|..+-+.+..|.|-|+.+.+|+...-..... ......+.++||+-........+...+..
T Consensus 18 ~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~ 83 (206)
T 3mm4_A 18 SHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKK 83 (206)
T ss_dssp -------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHH
T ss_pred ccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 456678889999999999999997443221111 11122356788888887766555555543
No 431
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=50.56 E-value=67 Score=29.39 Aligned_cols=74 Identities=15% Similarity=0.144 Sum_probs=45.0
Q ss_pred eEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHH---HHh-cCCcEEEeCcHHHHHHHhcCCccccCce
Q 043110 112 FALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKA---RLR-KGISILVATPGHLLDHLKHTSSFLHTNL 187 (316)
Q Consensus 112 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~-~~~~IlV~Tp~~l~~~l~~~~~~~~~~l 187 (316)
..+|++...+-+..+.+.+... . ..+..++|+........ .+. ...+|+|+|+..+.. ++++.++
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~----~-~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~------GiDip~v 417 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNE----Y-DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST------GISVKNL 417 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTT----C-SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH------SCCCCSE
T ss_pred CeEEEEecHHHHHHHHHHHHHc----C-CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc------ccccccC
Confidence 3555555566665555555442 2 24556666665443322 222 346899999776643 4556789
Q ss_pred eEEEEecch
Q 043110 188 RWIIFDEAD 196 (316)
Q Consensus 188 ~~lViDEad 196 (316)
+++|+..++
T Consensus 418 ~~vi~~~~~ 426 (510)
T 2oca_A 418 HHVVLAHGV 426 (510)
T ss_dssp EEEEESSCC
T ss_pred cEEEEeCCC
Confidence 999998777
No 432
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=50.46 E-value=7.1 Score=33.96 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=23.8
Q ss_pred ceeEEEEecchhhhcCCcHHHHHHHHHHhcc
Q 043110 186 NLRWIIFDEADRILELGFGKEIEEILDILGS 216 (316)
Q Consensus 186 ~l~~lViDEad~l~~~~~~~~i~~i~~~l~~ 216 (316)
+-+++++||.=.-+|......+..++..+..
T Consensus 208 ~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~ 238 (306)
T 3nh6_A 208 APGIILLDEATSALDTSNERAIQASLAKVCA 238 (306)
T ss_dssp CCSEEEEECCSSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcC
Confidence 4578999999988887666777777766643
No 433
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=50.24 E-value=7 Score=32.39 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=15.5
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.|.-+-+.||.|||||...
T Consensus 24 ~g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp CSEEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4445789999999999875
No 434
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=50.16 E-value=5.6 Score=31.29 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=13.2
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
-+.+.+++|||||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999764
No 435
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=49.91 E-value=7.7 Score=34.09 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=16.6
Q ss_pred CCCcEEEEcCCCCchHHHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAYLA 92 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~l 92 (316)
.|.-+++.+|+|+|||...+-
T Consensus 122 ~gsviLI~GpPGsGKTtLAlq 142 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHA 142 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 455689999999999976543
No 436
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=49.82 E-value=7.5 Score=44.55 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=17.2
Q ss_pred HhCCCcEEEEcCCCCchHHH
Q 043110 70 ILSGRDVLVNAATGTGKTVA 89 (316)
Q Consensus 70 il~g~d~li~a~TGsGKT~~ 89 (316)
+..|+.++++||||+|||..
T Consensus 1301 l~~~~pvLL~GptGtGKT~l 1320 (3245)
T 3vkg_A 1301 LSEHRPLILCGPPGSGKTMT 1320 (3245)
T ss_dssp HHTTCCCEEESSTTSSHHHH
T ss_pred HHCCCcEEEECCCCCCHHHH
Confidence 34778999999999999964
No 437
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=49.68 E-value=8 Score=33.93 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=13.2
Q ss_pred EEEEcCCCCchHHHH
Q 043110 76 VLVNAATGTGKTVAY 90 (316)
Q Consensus 76 ~li~a~TGsGKT~~~ 90 (316)
.++.||+|+|||...
T Consensus 26 ~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLL 40 (339)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 589999999999874
No 438
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=49.60 E-value=14 Score=32.25 Aligned_cols=16 Identities=13% Similarity=0.206 Sum_probs=13.7
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
-+.+.||+|||||...
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999764
No 439
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=49.43 E-value=14 Score=33.80 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=14.5
Q ss_pred cEEEEcCCCCchHHHHH
Q 043110 75 DVLVNAATGTGKTVAYL 91 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~ 91 (316)
.+++.+++|+|||....
T Consensus 101 vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CEEEECCSSSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999997653
No 440
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=48.99 E-value=44 Score=28.31 Aligned_cols=70 Identities=14% Similarity=0.076 Sum_probs=43.9
Q ss_pred CeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHH---Hh-cCCcEEEeCcHHHHHHHhcCCccccC
Q 043110 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKAR---LR-KGISILVATPGHLLDHLKHTSSFLHT 185 (316)
Q Consensus 110 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~-~~~~IlV~Tp~~l~~~l~~~~~~~~~ 185 (316)
+.++||.+++++-+..+++.+. ....++++......... +. ...+|+|+|. .+. .++++.
T Consensus 220 ~~~~lvf~~~~~~~~~l~~~l~---------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~--~Gid~~ 283 (337)
T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLFD---------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VAS--RGLDIP 283 (337)
T ss_dssp CSSEEEECSCHHHHHHHHTTCT---------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HHH--TTCCCC
T ss_pred CCcEEEEEcCHHHHHHHHHHhh---------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----ccc--cCCCcc
Confidence 4559999999998877665443 23455566555443322 22 3478999994 222 456667
Q ss_pred ceeEEEEecc
Q 043110 186 NLRWIIFDEA 195 (316)
Q Consensus 186 ~l~~lViDEa 195 (316)
+++++|.-..
T Consensus 284 ~~~~Vi~~~~ 293 (337)
T 2z0m_A 284 LVEKVINFDA 293 (337)
T ss_dssp CBSEEEESSC
T ss_pred CCCEEEEecC
Confidence 8888876443
No 441
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=48.38 E-value=9.1 Score=30.63 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=13.6
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
.+.+.|+.|||||.+.
T Consensus 14 iIgltG~~GSGKSTva 29 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999874
No 442
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=48.14 E-value=8.9 Score=37.67 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
+.++++.||+|+|||...
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 457999999999999875
No 443
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=48.14 E-value=18 Score=39.76 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=31.3
Q ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHhhhcCCCCCCCCCeeEEEEeCChHHHHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAYLAPIINHLQSYSPRIDRSSGTFALVLVPTSELCLLVY 127 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~~~lil~Pt~~L~~Q~~ 127 (316)
.|.++++.+++|+|||.....-+.+.+.. |-+++++. ..++..+++
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~---------Ge~~~Fit-~ee~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---------GKTCAFID-AEHALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT---------TCCEEEEC-TTSCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc---------CCeEEEEE-ccccHHHHH
Confidence 56789999999999998865555554433 44478876 344444444
No 444
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=47.98 E-value=8.4 Score=33.51 Aligned_cols=18 Identities=17% Similarity=0.095 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
|.-+.+.||+|||||...
T Consensus 90 g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CEEEEEECCCCchHHHHH
Confidence 445889999999999764
No 445
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=47.92 E-value=9.3 Score=32.87 Aligned_cols=19 Identities=37% Similarity=0.510 Sum_probs=16.1
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.|.-+.+.+|+|+|||...
T Consensus 63 ~Ge~~~i~G~NGsGKSTLl 81 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLL 81 (290)
T ss_dssp TTCEEEEEESTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 5677899999999999763
No 446
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=47.77 E-value=9.1 Score=32.62 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=13.9
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
-+++.+++|||||...
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999865
No 447
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=47.55 E-value=8.5 Score=35.96 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=30.4
Q ss_pred ccCCcccCCCCHHHHHHHHHHcC-CCCCcHHHHHHHHHH--hCCCcEEEEcCCCCchHHHH
Q 043110 33 ASCCFSSLGLDSTLCDQLRERLG-FEAPTKVQAQAIPVI--LSGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 33 ~~~~f~~~~l~~~l~~~l~~~~g-~~~p~~~Q~~~i~~i--l~g~d~li~a~TGsGKT~~~ 90 (316)
...+|+++.-.++.+..+.+-.. +..|. .+..+ .-.+.+++.+|+|+|||...
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~-----~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPS-----RFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGG-----GTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchh-----hhhhccCCCCceEEEECCCCCCHHHHH
Confidence 45679998777776666633110 11111 01000 01234999999999999864
No 448
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=47.53 E-value=14 Score=36.37 Aligned_cols=16 Identities=38% Similarity=0.478 Sum_probs=14.5
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
++++.||+|+|||...
T Consensus 490 ~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 5999999999999875
No 449
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=47.25 E-value=8.8 Score=31.43 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=14.8
Q ss_pred CCCcEEEEcCCCCchHHH
Q 043110 72 SGRDVLVNAATGTGKTVA 89 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~ 89 (316)
.|.-+.+.|+.|||||..
T Consensus 19 ~g~~i~i~G~~GsGKSTl 36 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTY 36 (230)
T ss_dssp CCEEEEEECSTTSCHHHH
T ss_pred CceEEEEECCCCCCHHHH
Confidence 344589999999999975
No 450
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=47.17 E-value=10 Score=32.13 Aligned_cols=30 Identities=10% Similarity=0.042 Sum_probs=23.6
Q ss_pred CceeEEEEecchhhhcCCcHHHHHHHHHHh
Q 043110 185 TNLRWIIFDEADRILELGFGKEIEEILDIL 214 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~~~i~~i~~~l 214 (316)
.+-+++++||--.-+|......+..++..+
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~ 174 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEY 174 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHS
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHh
Confidence 356799999999988877777777777665
No 451
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=47.00 E-value=8.7 Score=34.21 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCchHHHH
Q 043110 74 RDVLVNAATGTGKTVAY 90 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~ 90 (316)
.-+.+.+|+|+|||...
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 34789999999999874
No 452
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=46.79 E-value=10 Score=29.80 Aligned_cols=15 Identities=40% Similarity=0.377 Sum_probs=13.0
Q ss_pred cEEEEcCCCCchHHH
Q 043110 75 DVLVNAATGTGKTVA 89 (316)
Q Consensus 75 d~li~a~TGsGKT~~ 89 (316)
-+++.+++|+|||..
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 478999999999975
No 453
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=46.59 E-value=14 Score=31.85 Aligned_cols=18 Identities=17% Similarity=0.047 Sum_probs=15.8
Q ss_pred CCCcEEEEcCCCCchHHH
Q 043110 72 SGRDVLVNAATGTGKTVA 89 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~ 89 (316)
.|+.+++.|+.|+|||..
T Consensus 30 ~~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp HCSEEEEECCTTSSHHHH
T ss_pred cCCeEEEECCCcCCHHHH
Confidence 367899999999999975
No 454
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=46.45 E-value=9.8 Score=38.07 Aligned_cols=16 Identities=38% Similarity=0.389 Sum_probs=14.4
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
.+++.||||+|||...
T Consensus 590 ~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEBSCSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999875
No 455
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=45.83 E-value=10 Score=31.52 Aligned_cols=16 Identities=25% Similarity=0.302 Sum_probs=14.0
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
-+.+.|+.|||||...
T Consensus 24 iI~I~G~~GSGKST~a 39 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVC 39 (252)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999875
No 456
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=45.81 E-value=17 Score=31.30 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=13.7
Q ss_pred cEEEEcCCCCchHHHHH
Q 043110 75 DVLVNAATGTGKTVAYL 91 (316)
Q Consensus 75 d~li~a~TGsGKT~~~~ 91 (316)
-+.+.+++|+|||....
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46788999999997653
No 457
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=45.57 E-value=11 Score=31.44 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=24.4
Q ss_pred CceeEEEEecchhhhcCCcHHHHHHHHHHhc
Q 043110 185 TNLRWIIFDEADRILELGFGKEIEEILDILG 215 (316)
Q Consensus 185 ~~l~~lViDEad~l~~~~~~~~i~~i~~~l~ 215 (316)
.+-+++++||--.-+|......+..++..+.
T Consensus 143 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~ 173 (240)
T 2onk_A 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQ 173 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 3567899999998888777777777777664
No 458
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=45.50 E-value=11 Score=33.75 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=16.1
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.|+-+++.||+|+|||...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp TCCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5667999999999999764
No 459
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=45.48 E-value=16 Score=31.72 Aligned_cols=14 Identities=36% Similarity=0.513 Sum_probs=12.7
Q ss_pred EEEEcCCCCchHHH
Q 043110 76 VLVNAATGTGKTVA 89 (316)
Q Consensus 76 ~li~a~TGsGKT~~ 89 (316)
+++.++.|+|||..
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 68999999999976
No 460
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=45.30 E-value=26 Score=32.69 Aligned_cols=21 Identities=43% Similarity=0.675 Sum_probs=17.8
Q ss_pred CCCcEEEEcCCCCchHHHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAYLA 92 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~~l 92 (316)
.|.-+.+.+|+|+|||.....
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~ 58 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQ 58 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHH
Confidence 567899999999999987654
No 461
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=45.13 E-value=11 Score=29.89 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=13.7
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
-+.+.++.|||||...
T Consensus 4 ~i~i~G~~GsGKst~~ 19 (208)
T 3ake_A 4 IVTIDGPSASGKSSVA 19 (208)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999864
No 462
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=44.67 E-value=12 Score=30.61 Aligned_cols=19 Identities=11% Similarity=0.303 Sum_probs=16.0
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.+..+.+.++.|||||...
T Consensus 15 ~~~~i~i~G~~gsGKst~~ 33 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVA 33 (236)
T ss_dssp CCCEEEEECSSCSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4566899999999999864
No 463
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=44.60 E-value=11 Score=30.48 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=13.3
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
.+++.+|+||||+...
T Consensus 2 ~Iil~GpPGsGKgTqa 17 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQA 17 (206)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999998754
No 464
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=44.57 E-value=11 Score=31.21 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
...+.+.+|+|||||...
T Consensus 9 ~~~i~i~G~~GsGKsTla 26 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVS 26 (233)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346899999999999864
No 465
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=44.56 E-value=77 Score=29.74 Aligned_cols=79 Identities=13% Similarity=0.067 Sum_probs=47.9
Q ss_pred CeeEEEEeCChHHHHHHHHHHHHHHhhc---CCceeEEeeCCCCh--HHHHHHHhcC-Cc---EEEeCcHHHHHHHhcCC
Q 043110 110 GTFALVLVPTSELCLLVYEILQKLLHRF---RWIVPGYVMGGGNR--SKEKARLRKG-IS---ILVATPGHLLDHLKHTS 180 (316)
Q Consensus 110 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~l~~~-~~---IlV~Tp~~l~~~l~~~~ 180 (316)
+.++||.|++++-|..+++.+....... ....+..+.|.... ......+..+ .+ |+|+|- . +. .
T Consensus 439 ~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~-~----l~--~ 511 (590)
T 3h1t_A 439 FAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQ-L----LT--T 511 (590)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESS-T----TT--T
T ss_pred CccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECC-h----hh--c
Confidence 4679999999999999999988765321 11123334444332 2223344442 22 677762 1 11 4
Q ss_pred ccccCceeEEEEecc
Q 043110 181 SFLHTNLRWIIFDEA 195 (316)
Q Consensus 181 ~~~~~~l~~lViDEa 195 (316)
++++..++++|++..
T Consensus 512 GiDip~v~~Vi~~~~ 526 (590)
T 3h1t_A 512 GVDAPTCKNVVLARV 526 (590)
T ss_dssp TCCCTTEEEEEEESC
T ss_pred CccchheeEEEEEec
Confidence 667788999998755
No 466
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=44.56 E-value=13 Score=29.55 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=16.0
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.|+-+++.++.|+|||...
T Consensus 15 ~G~gvli~G~SGaGKStla 33 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELS 33 (181)
T ss_dssp TTEEEEEEESSSSSHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHH
Confidence 4667999999999999664
No 467
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=44.44 E-value=5.1 Score=32.13 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=13.0
Q ss_pred EEEEcCCCCchHHHH
Q 043110 76 VLVNAATGTGKTVAY 90 (316)
Q Consensus 76 ~li~a~TGsGKT~~~ 90 (316)
+++.|+.|||||...
T Consensus 3 I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999764
No 468
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=44.20 E-value=11 Score=32.19 Aligned_cols=16 Identities=19% Similarity=0.299 Sum_probs=14.1
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
-+.+.|+.|||||...
T Consensus 77 iI~I~G~~GSGKSTva 92 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVA 92 (281)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4899999999999865
No 469
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=44.10 E-value=10 Score=30.11 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=15.3
Q ss_pred CCCcEEEEcCCCCchHHH
Q 043110 72 SGRDVLVNAATGTGKTVA 89 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~ 89 (316)
.|..+.+.|++|+|||..
T Consensus 25 ~~~~v~lvG~~g~GKSTL 42 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSA 42 (210)
T ss_dssp CSEEEEEEECTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 455699999999999975
No 470
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=44.03 E-value=11 Score=37.54 Aligned_cols=17 Identities=41% Similarity=0.655 Sum_probs=15.1
Q ss_pred CcEEEEcCCCCchHHHH
Q 043110 74 RDVLVNAATGTGKTVAY 90 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~ 90 (316)
+.+++.+|.|+|||+..
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999864
No 471
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=43.92 E-value=40 Score=33.37 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=33.9
Q ss_pred CCcccC-CC-CHHHHHHHHHHcCCC---CCcHHHHHHHHHHhC-CC--cEEEEcCCCCchHHHHH
Q 043110 35 CCFSSL-GL-DSTLCDQLRERLGFE---APTKVQAQAIPVILS-GR--DVLVNAATGTGKTVAYL 91 (316)
Q Consensus 35 ~~f~~~-~l-~~~l~~~l~~~~g~~---~p~~~Q~~~i~~il~-g~--d~li~a~TGsGKT~~~~ 91 (316)
+.|..+ ++ +++.++....+.... +.+.+=..|+..++. ++ .+++.|.+|+|||.+.-
T Consensus 94 NPyk~l~~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK 158 (784)
T 2v26_A 94 NPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTK 158 (784)
T ss_dssp CCSSCCTTTTSHHHHHHHTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHH
T ss_pred cCCcCcCCCCCHHHHHHHhCCCcccCCchHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehHH
Confidence 456666 33 455555552221111 224555667766653 33 49999999999998853
No 472
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=43.54 E-value=12 Score=29.86 Aligned_cols=29 Identities=17% Similarity=0.231 Sum_probs=18.4
Q ss_pred cCceeEEEEecchhhh--cCCcHHHHHHHHH
Q 043110 184 HTNLRWIIFDEADRIL--ELGFGKEIEEILD 212 (316)
Q Consensus 184 ~~~l~~lViDEad~l~--~~~~~~~i~~i~~ 212 (316)
..+.+++|+||+..+- +..|...+..++.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 3567899999988773 3335444444443
No 473
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=43.07 E-value=13 Score=30.51 Aligned_cols=19 Identities=21% Similarity=0.406 Sum_probs=14.8
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
..+-+++.+|+||||+...
T Consensus 28 k~kiI~llGpPGsGKgTqa 46 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQC 46 (217)
T ss_dssp SCEEEEEECCTTCCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3345788999999998754
No 474
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=43.02 E-value=11 Score=32.07 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=13.4
Q ss_pred cEEEEcCCCCchHHHH
Q 043110 75 DVLVNAATGTGKTVAY 90 (316)
Q Consensus 75 d~li~a~TGsGKT~~~ 90 (316)
.+.+.||+|+|||...
T Consensus 4 ~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLV 19 (270)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999763
No 475
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=42.62 E-value=26 Score=32.70 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCchHHHH
Q 043110 74 RDVLVNAATGTGKTVAY 90 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~ 90 (316)
.-+.+.|++|+|||...
T Consensus 294 eVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCcccHHHHH
Confidence 34789999999999864
No 476
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=42.41 E-value=12 Score=30.78 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=16.0
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.|.-+++.|+.|+|||...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~ 43 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVI 43 (229)
T ss_dssp CCEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 4667999999999999764
No 477
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=42.39 E-value=2.3e+02 Score=29.41 Aligned_cols=33 Identities=15% Similarity=-0.025 Sum_probs=23.4
Q ss_pred eeEEeeCCCChHHHHHHHhcCCcEEEeCcHHHH
Q 043110 141 VPGYVMGGGNRSKEKARLRKGISILVATPGHLL 173 (316)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~~~~IlV~Tp~~l~ 173 (316)
...++..+.........+..++.|||+|-....
T Consensus 245 RvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~V 277 (1221)
T 1vt4_I 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277 (1221)
T ss_dssp SCEEEEESCCCHHHHHHHHSSCCEEEECSCSHH
T ss_pred CEEEEEeCcChHHHHHhhCCCeEEEEeccChHH
Confidence 444555666666666677788999999987653
No 478
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=42.26 E-value=11 Score=32.57 Aligned_cols=17 Identities=12% Similarity=0.198 Sum_probs=14.1
Q ss_pred CcEEEEcCCCCchHHHH
Q 043110 74 RDVLVNAATGTGKTVAY 90 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~ 90 (316)
.-+.+.|++|||||...
T Consensus 81 ~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTA 97 (308)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 34789999999999764
No 479
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=42.02 E-value=15 Score=29.43 Aligned_cols=18 Identities=11% Similarity=0.316 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCchHHHH
Q 043110 73 GRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 73 g~d~li~a~TGsGKT~~~ 90 (316)
+..+.+.++.|||||...
T Consensus 3 ~~~i~i~G~~gsGkst~~ 20 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIA 20 (219)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 346899999999999864
No 480
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=41.52 E-value=35 Score=27.23 Aligned_cols=16 Identities=44% Similarity=0.445 Sum_probs=11.5
Q ss_pred EEEcCCCCchHHHHHH
Q 043110 77 LVNAATGTGKTVAYLA 92 (316)
Q Consensus 77 li~a~TGsGKT~~~~l 92 (316)
+....+|+|||...+-
T Consensus 6 v~s~kgGvGKTt~a~n 21 (224)
T 1byi_A 6 VTGTDTEVGKTVASCA 21 (224)
T ss_dssp EEESSTTSCHHHHHHH
T ss_pred EEECCCCCCHHHHHHH
Confidence 4455689999987643
No 481
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=41.52 E-value=27 Score=30.32 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=14.5
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 043110 76 VLVNAATGTGKTVAYLAPI 94 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~lp~ 94 (316)
+++.+..|.|||.+...-+
T Consensus 22 ~v~sgkGGvGKTTva~~LA 40 (329)
T 2woo_A 22 IFVGGKGGVGKTTTSCSLA 40 (329)
T ss_dssp EEEECSSSSSHHHHHHHHH
T ss_pred EEEeCCCCCcHHHHHHHHH
Confidence 6778889999998764433
No 482
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=41.48 E-value=29 Score=30.09 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=15.0
Q ss_pred EEEEcCCCCchHHHHHHHHH
Q 043110 76 VLVNAATGTGKTVAYLAPII 95 (316)
Q Consensus 76 ~li~a~TGsGKT~~~~lp~l 95 (316)
++..+..|.|||.+..--+.
T Consensus 17 ~v~sgKGGvGKTTvA~~LA~ 36 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAATAL 36 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEeCCCCchHHHHHHHHHH
Confidence 67888899999988654333
No 483
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=41.44 E-value=30 Score=29.65 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=16.2
Q ss_pred CCCc--EEEEcCCCCchHHHHHH
Q 043110 72 SGRD--VLVNAATGTGKTVAYLA 92 (316)
Q Consensus 72 ~g~d--~li~a~TGsGKT~~~~l 92 (316)
+|.| ++..++||+|||.-.+.
T Consensus 90 ~GyNvcIfSyGQTGsGKT~ral~ 112 (298)
T 2o0a_A 90 QKKNFNLISLSTTPHGSLRESLI 112 (298)
T ss_dssp TTCCEEEEEECSSCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCccHHHHH
Confidence 3776 78999999999955433
No 484
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=41.42 E-value=13 Score=33.03 Aligned_cols=18 Identities=33% Similarity=0.543 Sum_probs=15.4
Q ss_pred CCCcEEEEcCCCCchHHH
Q 043110 72 SGRDVLVNAATGTGKTVA 89 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~ 89 (316)
.|.-+.+.+|+|||||..
T Consensus 29 ~Ge~~~llGpsGsGKSTL 46 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTL 46 (359)
T ss_dssp TTCEEEEEESTTSSHHHH
T ss_pred CCCEEEEECCCCchHHHH
Confidence 566688999999999975
No 485
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=41.28 E-value=14 Score=32.77 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=16.1
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.|.-+.+.+|+|||||...
T Consensus 40 ~Ge~~~llGpnGsGKSTLL 58 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTIL 58 (355)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 5677899999999999763
No 486
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=41.28 E-value=51 Score=29.84 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=26.6
Q ss_pred CCcHHHHHHHHHHh---CCCcEEEEcCCCCchHHHH
Q 043110 58 APTKVQAQAIPVIL---SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 58 ~p~~~Q~~~i~~il---~g~d~li~a~TGsGKT~~~ 90 (316)
+|...=.++|+.+. .|+...+.++.|+|||...
T Consensus 157 e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll 192 (427)
T 3l0o_A 157 DPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTIL 192 (427)
T ss_dssp STTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHH
T ss_pred cchhccchhhhhcccccCCceEEEecCCCCChhHHH
Confidence 45556677887776 6889999999999999865
No 487
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=41.24 E-value=21 Score=34.66 Aligned_cols=68 Identities=9% Similarity=-0.017 Sum_probs=42.6
Q ss_pred CeeEEEEeCChHHHHHHHHHHHHHHhhcCCceeEEeeCCCChHHHHHHHhc-CCcEEEeCcHHHHHHHhcCCccccCcee
Q 043110 110 GTFALVLVPTSELCLLVYEILQKLLHRFRWIVPGYVMGGGNRSKEKARLRK-GISILVATPGHLLDHLKHTSSFLHTNLR 188 (316)
Q Consensus 110 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~IlV~Tp~~l~~~l~~~~~~~~~~l~ 188 (316)
+.++||.+|+++-++.+++.++.. ...+..++| .........+.. ..+|||+|.- +. ..+++. ++
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~-----g~~v~~lHg-~eR~~v~~~F~~g~~~VLVaTdv-----~e--~GIDip-v~ 475 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA-----GKRVIQLNR-KSYDTEYPKCKNGDWDFVITTDI-----SE--MGANFG-AS 475 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT-----TCCEEEECS-SSHHHHGGGGGTCCCSEEEECGG-----GG--TTCCCC-CS
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC-----CCeEEEeCh-HHHHHHHHHHHCCCceEEEECch-----hh--cceeeC-Cc
Confidence 456999999999999888877654 244555555 333333333433 4789999941 22 345555 66
Q ss_pred EEE
Q 043110 189 WII 191 (316)
Q Consensus 189 ~lV 191 (316)
++|
T Consensus 476 ~VI 478 (673)
T 2wv9_A 476 RVI 478 (673)
T ss_dssp EEE
T ss_pred EEE
Confidence 655
No 488
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=41.08 E-value=35 Score=25.93 Aligned_cols=13 Identities=15% Similarity=0.248 Sum_probs=11.3
Q ss_pred eeEEEEecchhhh
Q 043110 187 LRWIIFDEADRIL 199 (316)
Q Consensus 187 l~~lViDEad~l~ 199 (316)
-.++||||+|.+.
T Consensus 116 ~~vl~iDe~~~l~ 128 (195)
T 1jbk_A 116 NVILFIDELHTMV 128 (195)
T ss_dssp TEEEEEETGGGGT
T ss_pred CeEEEEeCHHHHh
Confidence 4589999999986
No 489
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=40.81 E-value=15 Score=32.75 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=21.1
Q ss_pred ceeEEEEecchhhhcCCcHHHHHHHHHHhc
Q 043110 186 NLRWIIFDEADRILELGFGKEIEEILDILG 215 (316)
Q Consensus 186 ~l~~lViDEad~l~~~~~~~~i~~i~~~l~ 215 (316)
+-+++++||--.-+|......+..++..+.
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 180 (359)
T 2yyz_A 151 QPKVLLFDEPLSNLDANLRMIMRAEIKHLQ 180 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 557888888887777666666666666553
No 490
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=40.65 E-value=15 Score=32.71 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=15.8
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.|.-+.+.+|+|||||...
T Consensus 28 ~Ge~~~llGpnGsGKSTLL 46 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLL 46 (362)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCchHHHHH
Confidence 5666889999999999763
No 491
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=40.47 E-value=15 Score=29.18 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=12.8
Q ss_pred EEEEcCCCCchHHHH
Q 043110 76 VLVNAATGTGKTVAY 90 (316)
Q Consensus 76 ~li~a~TGsGKT~~~ 90 (316)
+++.+++|||||...
T Consensus 2 ilV~Gg~~SGKS~~A 16 (180)
T 1c9k_A 2 ILVTGGARSGKSRHA 16 (180)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 689999999999754
No 492
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=40.40 E-value=17 Score=32.09 Aligned_cols=19 Identities=26% Similarity=0.101 Sum_probs=15.6
Q ss_pred CcEEEEcCCCCchHHHHHH
Q 043110 74 RDVLVNAATGTGKTVAYLA 92 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~l 92 (316)
.-+.+.+|+|+|||.....
T Consensus 132 ~i~~I~G~~GsGKTTL~~~ 150 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHT 150 (349)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4589999999999987543
No 493
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=39.99 E-value=14 Score=33.23 Aligned_cols=29 Identities=17% Similarity=0.159 Sum_probs=20.7
Q ss_pred ceeEEEEecchhhhcCCcHHHHHHHHHHh
Q 043110 186 NLRWIIFDEADRILELGFGKEIEEILDIL 214 (316)
Q Consensus 186 ~l~~lViDEad~l~~~~~~~~i~~i~~~l 214 (316)
+-+++++||-=.-+|......+..++..+
T Consensus 173 ~P~lLLLDEPts~LD~~~~~~l~~~l~~~ 201 (390)
T 3gd7_A 173 KAKILLLDEPSAHLDPVTYQIIRRTLKQA 201 (390)
T ss_dssp TCCEEEEESHHHHSCHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 45788999988888876666666666554
No 494
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=39.90 E-value=16 Score=32.86 Aligned_cols=30 Identities=13% Similarity=0.127 Sum_probs=21.1
Q ss_pred ceeEEEEecchhhhcCCcHHHHHHHHHHhc
Q 043110 186 NLRWIIFDEADRILELGFGKEIEEILDILG 215 (316)
Q Consensus 186 ~l~~lViDEad~l~~~~~~~~i~~i~~~l~ 215 (316)
+-+++++||--.-+|......+..++..+.
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~l~ 180 (381)
T 3rlf_A 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLH 180 (381)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence 456888888887777766666666666654
No 495
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=39.90 E-value=30 Score=32.80 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=16.8
Q ss_pred CcEEEEcCCCCchHHHHHHHHHH
Q 043110 74 RDVLVNAATGTGKTVAYLAPIIN 96 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~~~lp~l~ 96 (316)
+-+++.+..|.|||.+..--+..
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~ 31 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIR 31 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCcCHHHHHHHHHHHH
Confidence 34788899999999886544433
No 496
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=39.70 E-value=11 Score=32.78 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=0.0
Q ss_pred EEEEcCCCCchHHHH
Q 043110 76 VLVNAATGTGKTVAY 90 (316)
Q Consensus 76 ~li~a~TGsGKT~~~ 90 (316)
.++.+++|+|||...
T Consensus 27 ~~i~G~NGsGKS~ll 41 (322)
T 1e69_A 27 TAIVGPNGSGKSNII 41 (322)
T ss_dssp EEEECCTTTCSTHHH
T ss_pred EEEECCCCCcHHHHH
No 497
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=39.64 E-value=15 Score=34.94 Aligned_cols=30 Identities=40% Similarity=0.509 Sum_probs=23.2
Q ss_pred ceeEEEEecchhhhcCCcHHHHHHHHHHhc
Q 043110 186 NLRWIIFDEADRILELGFGKEIEEILDILG 215 (316)
Q Consensus 186 ~l~~lViDEad~l~~~~~~~~i~~i~~~l~ 215 (316)
+-+++++||.-.-+|......+...+..+.
T Consensus 495 ~p~illlDEpts~LD~~~~~~i~~~l~~~~ 524 (578)
T 4a82_A 495 NPPILILDEATSALDLESESIIQEALDVLS 524 (578)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHc
Confidence 457899999998888766667777776664
No 498
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=39.51 E-value=23 Score=30.43 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=19.5
Q ss_pred HHHHHHhCCCcEEEEcCCCCchHHH
Q 043110 65 QAIPVILSGRDVLVNAATGTGKTVA 89 (316)
Q Consensus 65 ~~i~~il~g~d~li~a~TGsGKT~~ 89 (316)
..+-.++.|+-+.+.+|+|+|||..
T Consensus 157 ~~L~~~l~G~i~~l~G~sG~GKSTL 181 (302)
T 2yv5_A 157 DELVDYLEGFICILAGPSGVGKSSI 181 (302)
T ss_dssp HHHHHHTTTCEEEEECSTTSSHHHH
T ss_pred HHHHhhccCcEEEEECCCCCCHHHH
Confidence 3344556788899999999999975
No 499
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=39.36 E-value=15 Score=28.54 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=13.9
Q ss_pred CcEEEEcCCCCchHHH
Q 043110 74 RDVLVNAATGTGKTVA 89 (316)
Q Consensus 74 ~d~li~a~TGsGKT~~ 89 (316)
-.+++.|.+|+|||..
T Consensus 22 ~ki~v~G~~~~GKSsl 37 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTI 37 (190)
T ss_dssp EEEEEEECTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3699999999999974
No 500
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=39.16 E-value=16 Score=32.66 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=16.0
Q ss_pred CCCcEEEEcCCCCchHHHH
Q 043110 72 SGRDVLVNAATGTGKTVAY 90 (316)
Q Consensus 72 ~g~d~li~a~TGsGKT~~~ 90 (316)
.|.-+.+.+|+|+|||...
T Consensus 28 ~Ge~~~llGpnGsGKSTLL 46 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTL 46 (372)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCcHHHHHH
Confidence 5667899999999999763
Done!