Query 043113
Match_columns 172
No_of_seqs 116 out of 1180
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 22:54:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043113.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043113hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 99.9 6.4E-28 2.2E-32 156.4 -0.1 58 8-65 1-74 (77)
2 1hbx_A SRF, serum response fac 99.9 2.2E-28 7.4E-33 163.0 -2.8 58 3-60 6-79 (92)
3 3p57_A Myocyte-specific enhanc 99.9 1E-27 3.6E-32 159.1 0.1 60 8-67 1-76 (90)
4 1mnm_A Protein (MCM1 transcrip 99.9 6.9E-28 2.4E-32 162.6 -1.4 59 3-61 12-86 (100)
5 1k6o_B SRF, serum response fac 99.9 6.8E-28 2.3E-32 163.6 -2.8 57 3-59 5-77 (103)
6 1s94_A S-syntaxin; three helix 79.0 15 0.00052 26.2 9.4 69 84-157 40-108 (180)
7 3tnu_B Keratin, type II cytosk 77.8 13 0.00043 25.4 7.5 66 80-153 36-101 (129)
8 2oqq_A Transcription factor HY 75.3 8.1 0.00028 21.1 5.5 32 80-111 10-41 (42)
9 3tnu_A Keratin, type I cytoske 71.1 13 0.00043 25.5 6.1 65 81-153 39-103 (131)
10 2yy0_A C-MYC-binding protein; 68.9 14 0.00048 21.2 5.6 29 82-110 21-49 (53)
11 2cly_B ATP synthase D chain, m 66.3 15 0.0005 26.2 5.8 14 123-136 126-139 (160)
12 1p9i_A Cortexillin I/GCN4 hybr 62.4 13 0.00043 18.3 3.4 27 130-156 2-28 (31)
13 3efg_A Protein SLYX homolog; x 61.6 22 0.00077 22.1 5.3 32 77-108 25-56 (78)
14 1a93_B MAX protein, coiled coi 61.6 16 0.00053 19.1 4.0 26 86-111 6-31 (34)
15 2ke4_A CDC42-interacting prote 53.6 43 0.0015 21.7 9.3 65 80-147 15-79 (98)
16 1j1d_C Troponin I, TNI; THIN f 52.9 53 0.0018 22.6 9.7 29 123-151 54-82 (133)
17 2l5g_B Putative uncharacterize 51.8 28 0.00095 19.0 5.1 28 81-108 10-37 (42)
18 2wvr_A Geminin; DNA replicatio 50.2 64 0.0022 23.9 6.8 29 82-110 117-145 (209)
19 2hv8_D RAB11 family-interactin 48.5 38 0.0013 20.3 4.5 34 122-155 18-51 (64)
20 4dnd_A Syntaxin-10, SYN10; str 48.5 62 0.0021 22.1 9.3 59 90-153 70-128 (130)
21 1j1e_C Troponin I, TNI; THIN f 46.8 80 0.0027 22.9 8.8 28 123-150 54-81 (180)
22 3twe_A Alpha4H; unknown functi 46.3 24 0.00083 16.8 4.1 19 83-101 4-22 (27)
23 1dip_A Delta-sleep-inducing pe 45.0 36 0.0012 21.0 4.1 29 82-110 17-45 (78)
24 2jee_A YIIU; FTSZ, septum, coi 44.4 57 0.0019 20.5 9.6 64 80-155 13-76 (81)
25 1t6f_A Geminin; coiled-coil, c 43.5 36 0.0012 17.9 4.0 26 83-108 10-35 (37)
26 2q6q_A Spindle POLE BODY compo 42.7 55 0.0019 19.8 8.1 41 129-169 33-73 (74)
27 1uii_A Geminin; human, DNA rep 42.5 62 0.0021 20.4 5.0 28 83-110 49-76 (83)
28 2oa5_A Hypothetical protein BQ 41.0 77 0.0026 21.0 6.8 53 89-145 10-62 (110)
29 3na7_A HP0958; flagellar bioge 40.7 1.1E+02 0.0039 22.9 8.4 24 131-154 140-163 (256)
30 1hjb_A Ccaat/enhancer binding 40.6 68 0.0023 20.3 5.8 31 81-111 44-74 (87)
31 3teq_A Stromal interaction mol 40.3 76 0.0026 20.8 7.8 71 82-153 16-87 (101)
32 2w6b_A RHO guanine nucleotide 40.2 53 0.0018 18.9 5.6 31 80-110 17-47 (56)
33 3ajw_A Flagellar FLIJ protein; 39.0 87 0.003 21.1 10.3 72 81-154 20-91 (150)
34 3ghg_A Fibrinogen alpha chain; 37.9 1.9E+02 0.0065 24.7 10.5 15 126-140 172-186 (562)
35 2dfs_A Myosin-5A; myosin-V, in 37.4 2.4E+02 0.0081 26.2 10.1 13 86-98 990-1002(1080)
36 1wlq_A Geminin; coiled-coil; 2 36.7 67 0.0023 20.2 4.5 28 83-110 41-68 (83)
37 2zxx_A Geminin; coiled-coil, c 35.4 81 0.0028 19.7 5.7 27 83-109 37-63 (79)
38 1z56_A Ligase interacting fact 34.0 71 0.0024 24.3 5.0 30 15-44 117-146 (246)
39 3l4q_C Phosphatidylinositol 3- 33.6 82 0.0028 22.6 5.2 33 78-110 101-133 (170)
40 1ik9_A DNA repair protein XRCC 33.4 1.5E+02 0.005 22.0 10.5 30 129-158 174-203 (213)
41 1nkp_A C-MYC, MYC proto-oncoge 32.4 94 0.0032 19.5 5.4 32 81-112 53-84 (88)
42 2wuj_A Septum site-determining 32.1 70 0.0024 18.4 3.9 20 85-104 32-51 (57)
43 2l5g_A GPS2 protein, G protein 29.3 68 0.0023 16.9 4.7 23 80-102 8-30 (38)
44 4dzn_A Coiled-coil peptide CC- 29.2 59 0.002 16.1 4.7 21 82-102 4-24 (33)
45 2ygg_A Sodium/hydrogen exchang 29.0 95 0.0032 18.9 4.1 27 126-152 3-29 (70)
46 1gu4_A CAAT/enhancer binding p 28.6 97 0.0033 19.1 4.3 25 82-106 38-62 (78)
47 3mwp_A Nucleoprotein; structur 28.4 97 0.0033 26.0 5.3 27 123-149 98-124 (577)
48 1nlw_A MAD protein, MAX dimeri 28.0 1.1E+02 0.0037 18.8 5.2 30 81-110 48-77 (80)
49 1ez3_A Syntaxin-1A; three heli 27.9 1.3E+02 0.0044 19.6 7.6 30 128-157 48-77 (127)
50 2k48_A Nucleoprotein; viral pr 27.6 1.3E+02 0.0045 19.7 8.6 60 79-148 34-93 (107)
51 1g6u_A Domain swapped dimer; d 27.3 79 0.0027 17.0 7.1 22 125-146 15-36 (48)
52 1nkp_B MAX protein, MYC proto- 27.2 1.1E+02 0.0038 18.7 8.6 31 81-111 48-78 (83)
53 4etp_A Kinesin-like protein KA 26.3 2.1E+02 0.0071 23.2 7.1 16 85-100 8-23 (403)
54 2zvv_Y Cyclin-dependent kinase 26.2 13 0.00045 17.8 -0.1 11 21-31 15-25 (26)
55 1fxk_C Protein (prefoldin); ar 25.8 1.5E+02 0.0051 19.7 5.8 20 82-101 90-109 (133)
56 1t2k_D Cyclic-AMP-dependent tr 25.7 1E+02 0.0035 17.7 5.4 11 88-98 37-47 (61)
57 1j1d_B Troponin T, TNT; THIN f 25.0 85 0.0029 20.7 3.7 29 123-151 38-66 (106)
58 3sja_C Golgi to ER traffic pro 24.5 1.2E+02 0.0041 18.1 4.4 20 82-101 34-53 (65)
59 2dgc_A Protein (GCN4); basic d 24.5 1.1E+02 0.0039 17.9 4.5 19 82-100 32-50 (63)
60 3qne_A Seryl-tRNA synthetase, 23.8 3.2E+02 0.011 22.9 9.6 71 82-156 35-107 (485)
61 3l4f_A RHO guanine nucleotide 23.3 1.2E+02 0.0042 17.8 4.8 33 79-111 13-45 (61)
62 2v66_B Nuclear distribution pr 23.2 1.7E+02 0.0058 19.4 9.3 56 87-154 35-90 (111)
63 1lj9_A Transcriptional regulat 23.2 1.4E+02 0.0049 19.2 4.8 29 124-152 112-140 (144)
64 4gip_A Fusion glycoprotein F2; 23.1 1.4E+02 0.0049 18.6 4.7 36 121-156 39-74 (81)
65 1dd4_C 50S ribosomal protein L 22.6 61 0.0021 17.4 2.2 21 123-143 9-29 (40)
66 3fx7_A Putative uncharacterize 22.6 1.6E+02 0.0055 18.9 4.9 31 127-157 6-36 (94)
67 1ov9_A VICH protein; dimer, he 22.3 1.1E+02 0.0037 17.2 3.3 21 125-145 18-38 (50)
68 2dq0_A Seryl-tRNA synthetase; 21.9 3.4E+02 0.012 22.4 9.8 71 82-156 33-105 (455)
69 4dzo_A Mitotic spindle assembl 21.8 1.4E+02 0.0049 20.0 4.5 20 88-107 5-24 (123)
70 4dci_A Uncharacterized protein 21.8 2.1E+02 0.0072 20.0 9.2 73 75-156 24-99 (150)
71 3t98_B Nucleoporin NUP58/NUP45 21.1 1.7E+02 0.0058 18.6 8.6 31 125-155 42-72 (93)
72 1pzq_A Erythronolide synthase; 21.0 1.2E+02 0.0042 16.9 3.6 25 131-155 13-42 (60)
73 2wg5_A General control protein 20.9 1.1E+02 0.0038 19.9 3.7 25 82-106 9-33 (109)
74 1lyp_A CAP18; lipopolysacchari 20.7 90 0.0031 15.3 4.3 24 131-154 5-28 (32)
75 3hhm_B NISH2 P85alpha; PI3KCA, 20.0 2.2E+02 0.0077 22.8 6.0 53 53-107 185-239 (373)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=99.93 E-value=6.4e-28 Score=156.40 Aligned_cols=58 Identities=26% Similarity=0.439 Sum_probs=53.6
Q ss_pred CccccceeeecCCcccchhhccccchhhhhhhhhhhc----------------cccCcccHHHHHHHHhCCCcc
Q 043113 8 RRQKIEMKKIENEDDRLITFSKRGSGIYKKASEIWEA----------------IHLCQPSVKAIANRFLGMSQL 65 (172)
Q Consensus 8 ~R~Ki~i~~I~n~~~R~vTfsKRr~GL~KKa~ELs~L----------------~sfg~Psv~~Vl~ry~~~~~~ 65 (172)
||+||+|++|+|+++|||||+|||+||||||+||||| |+|++|+++.||+||+..+.+
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~~ 74 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP 74 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC---
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccCC
Confidence 8999999999999999999999999999999999999 789999999999999987654
No 2
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=99.93 E-value=2.2e-28 Score=163.03 Aligned_cols=58 Identities=38% Similarity=0.476 Sum_probs=54.8
Q ss_pred CCCCCCccccceeeecCCcccchhhccccchhhhhhhhhhhc----------------cccCcccHHHHHHHHh
Q 043113 3 GKKTKRRQKIEMKKIENEDDRLITFSKRGSGIYKKASEIWEA----------------IHLCQPSVKAIANRFL 60 (172)
Q Consensus 3 ~k~~m~R~Ki~i~~I~n~~~R~vTfsKRr~GL~KKa~ELs~L----------------~sfg~Psv~~Vl~ry~ 60 (172)
+|++|||+||+|++|+|+++|+|||+|||.||||||+||||| |+|++|+++.||++|.
T Consensus 6 ~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~ 79 (92)
T 1hbx_A 6 GKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSET 79 (92)
T ss_dssp CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHH
T ss_pred CCCCCCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhc
Confidence 588999999999999999999999999999999999999999 8899999999988653
No 3
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=99.93 E-value=1e-27 Score=159.12 Aligned_cols=60 Identities=27% Similarity=0.463 Sum_probs=56.7
Q ss_pred CccccceeeecCCcccchhhccccchhhhhhhhhhhc----------------cccCcccHHHHHHHHhCCCccCC
Q 043113 8 RRQKIEMKKIENEDDRLITFSKRGSGIYKKASEIWEA----------------IHLCQPSVKAIANRFLGMSQLHN 67 (172)
Q Consensus 8 ~R~Ki~i~~I~n~~~R~vTfsKRr~GL~KKa~ELs~L----------------~sfg~Psv~~Vl~ry~~~~~~~~ 67 (172)
||+||+|++|+|+++|||||+|||.||||||+||||| |+|++|+|+.||+||+..+.+..
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~~ 76 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHE 76 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCCC
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcccc
Confidence 8999999999999999999999999999999999999 78999999999999998876543
No 4
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=99.93 E-value=6.9e-28 Score=162.61 Aligned_cols=59 Identities=41% Similarity=0.534 Sum_probs=54.1
Q ss_pred CCCCCCccccceeeecCCcccchhhccccchhhhhhhhhhhc----------------cccCcccHHHHHHHHhC
Q 043113 3 GKKTKRRQKIEMKKIENEDDRLITFSKRGSGIYKKASEIWEA----------------IHLCQPSVKAIANRFLG 61 (172)
Q Consensus 3 ~k~~m~R~Ki~i~~I~n~~~R~vTfsKRr~GL~KKa~ELs~L----------------~sfg~Psv~~Vl~ry~~ 61 (172)
++++|||+||+|++|+|+.+|+|||+|||.||||||+||||| |+|++|++..|+++|..
T Consensus 12 ~~~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G 86 (100)
T 1mnm_A 12 NGQQKERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEG 86 (100)
T ss_dssp ---CCCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHH
T ss_pred CCCCCCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhC
Confidence 478999999999999999999999999999999999999999 88999999999998854
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=99.92 E-value=6.8e-28 Score=163.62 Aligned_cols=57 Identities=39% Similarity=0.492 Sum_probs=54.4
Q ss_pred CCCCCCccccceeeecCCcccchhhccccchhhhhhhhhhhc----------------cccCcccHHHHHHHH
Q 043113 3 GKKTKRRQKIEMKKIENEDDRLITFSKRGSGIYKKASEIWEA----------------IHLCQPSVKAIANRF 59 (172)
Q Consensus 3 ~k~~m~R~Ki~i~~I~n~~~R~vTfsKRr~GL~KKa~ELs~L----------------~sfg~Psv~~Vl~ry 59 (172)
+|++|||+||+|++|+|+.+|+|||+|||.||||||+||||| |+|++|+++.||+++
T Consensus 5 ~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~ 77 (103)
T 1k6o_B 5 GKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE 77 (103)
T ss_dssp CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred CCCCCCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence 588999999999999999999999999999999999999999 889999999999864
No 6
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=79.01 E-value=15 Score=26.25 Aligned_cols=69 Identities=12% Similarity=0.143 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043113 84 ELNQQHNDLLRQLDEEKEQQNMLKQMRRVKETQPRWWETPVDELNLQELLQMDSAVDDLHQTFLAKINEKTAAA 157 (172)
Q Consensus 84 ~L~~~~~kl~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~l~~Ls~~eL~~l~~~Le~~l~~V~~r~~~l~~~~ 157 (172)
.+-.++..++..|..+......|...+...-+. ..-+.---.+|..+...+...-..|+.++..|-...
T Consensus 40 ~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~-----~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~ 108 (180)
T 1s94_A 40 EFFEQVEEIRAMIDKISDNVDAVKKKHSDILSA-----PQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNI 108 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666667776666666666665432221 112223348888899999999999999998887543
No 7
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=77.83 E-value=13 Score=25.39 Aligned_cols=66 Identities=20% Similarity=0.210 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043113 80 ARINELNQQHNDLLRQLDEEKEQQNMLKQMRRVKETQPRWWETPVDELNLQELLQMDSAVDDLHQTFLAKINEK 153 (172)
Q Consensus 80 ~~~~~L~~~~~kl~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~l~~Ls~~eL~~l~~~Le~~l~~V~~r~~~l 153 (172)
..+..++..+..|+.+++.++..+..|+..+...... .++.+.++......|+.-+..++.-+...
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~--------~~~~l~~~q~~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQR--------GELALKDARNKLAELEEALQKAKQDMARL 101 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4577888889999999998888887777766543221 12235555555555555555555554443
No 8
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=75.27 E-value=8.1 Score=21.14 Aligned_cols=32 Identities=19% Similarity=0.504 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043113 80 ARINELNQQHNDLLRQLDEEKEQQNMLKQMRR 111 (172)
Q Consensus 80 ~~~~~L~~~~~kl~~~l~~~k~~~~~l~~~~~ 111 (172)
.++..|.....+|.+++.-++..|.+|++.+.
T Consensus 10 ~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 10 NRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 45677888888888888888888888887653
No 9
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=71.11 E-value=13 Score=25.47 Aligned_cols=65 Identities=14% Similarity=0.229 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043113 81 RINELNQQHNDLLRQLDEEKEQQNMLKQMRRVKETQPRWWETPVDELNLQELLQMDSAVDDLHQTFLAKINEK 153 (172)
Q Consensus 81 ~~~~L~~~~~kl~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~l~~Ls~~eL~~l~~~Le~~l~~V~~r~~~l 153 (172)
.+..++..+..|+.+++.++..+..|+..+...... .++.+.+++.....|+.-+..++..+...
T Consensus 39 Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~--------~~~~l~~~q~~i~~lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 39 EISELRRTMQNLEIELQSQLSMKASLENSLEETKGR--------YCMQLAQIQEMIGSVEEQLAQLRCEMEQQ 103 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888888877777777666533221 12234555555555555555555554443
No 10
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=68.91 E-value=14 Score=21.24 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043113 82 INELNQQHNDLLRQLDEEKEQQNMLKQMR 110 (172)
Q Consensus 82 ~~~L~~~~~kl~~~l~~~k~~~~~l~~~~ 110 (172)
+.-|..+...|+.+++.+++++.++....
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777766666555443
No 11
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=66.28 E-value=15 Score=26.24 Aligned_cols=14 Identities=21% Similarity=0.581 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHH
Q 043113 123 PVDELNLQELLQMD 136 (172)
Q Consensus 123 ~l~~Ls~~eL~~l~ 136 (172)
+++.|+++|+..-.
T Consensus 126 P~~~mT~dd~~~a~ 139 (160)
T 2cly_B 126 PFDQMTIEDLNEVF 139 (160)
T ss_dssp --------------
T ss_pred ChHhCCHHHHHHhC
Confidence 78899999886653
No 12
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=62.43 E-value=13 Score=18.33 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043113 130 QELLQMDSAVDDLHQTFLAKINEKTAA 156 (172)
Q Consensus 130 ~eL~~l~~~Le~~l~~V~~r~~~l~~~ 156 (172)
++|+.|...|+.-.+.+..++++|+.-
T Consensus 2 dqlnallasleaenkqlkakveellak 28 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888888753
No 13
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=61.63 E-value=22 Score=22.09 Aligned_cols=32 Identities=16% Similarity=0.148 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043113 77 YSHARINELNQQHNDLLRQLDEEKEQQNMLKQ 108 (172)
Q Consensus 77 ~~~~~~~~L~~~~~kl~~~l~~~k~~~~~l~~ 108 (172)
|+...++.||..+.+.+.+++.++.....|.+
T Consensus 25 fqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~ 56 (78)
T 3efg_A 25 FQEQALTELSEALADARLTGARNAELIRHLLE 56 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666666555444433
No 14
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=61.56 E-value=16 Score=19.12 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043113 86 NQQHNDLLRQLDEEKEQQNMLKQMRR 111 (172)
Q Consensus 86 ~~~~~kl~~~l~~~k~~~~~l~~~~~ 111 (172)
..+....++.++.++++|..|++.++
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 34455666677777777777776665
No 15
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=53.65 E-value=43 Score=21.75 Aligned_cols=65 Identities=23% Similarity=0.267 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 043113 80 ARINELNQQHNDLLRQLDEEKEQQNMLKQMRRVKETQPRWWETPVDELNLQELLQMDSAVDDLHQTFL 147 (172)
Q Consensus 80 ~~~~~L~~~~~kl~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~l~~Ls~~eL~~l~~~Le~~l~~V~ 147 (172)
.+...|.+.+.+|+.+++++....+-+..++..+... .-++ |...+ ..+|.+....|+.+..++.
T Consensus 15 qRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~n-P~~G-D~~s~-~~~L~e~~~kid~L~~el~ 79 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKT-PQMG-DPASL-EPQIAETLSNIERLKLEVQ 79 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHC-GGGC-CGGGS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CccC-CHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999888777788787765554 2233 34444 6678887777777766653
No 16
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=52.93 E-value=53 Score=22.62 Aligned_cols=29 Identities=10% Similarity=0.090 Sum_probs=23.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 043113 123 PVDELNLQELLQMDSAVDDLHQTFLAKIN 151 (172)
Q Consensus 123 ~l~~Ls~~eL~~l~~~Le~~l~~V~~r~~ 151 (172)
++++||.++|.++-..|-+.+..+.+-..
T Consensus 54 ~id~ls~~~L~e~~keLh~~I~~LEeEKY 82 (133)
T 1j1d_C 54 ELAGLGFAELQDLARQLHARVDKVDEERY 82 (133)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 68999999999998888777776655443
No 17
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=51.76 E-value=28 Score=19.02 Aligned_cols=28 Identities=14% Similarity=0.335 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043113 81 RINELNQQHNDLLRQLDEEKEQQNMLKQ 108 (172)
Q Consensus 81 ~~~~L~~~~~kl~~~l~~~k~~~~~l~~ 108 (172)
.++..+.+|++..+++..++.+...|++
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777777777666555544
No 18
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=50.17 E-value=64 Score=23.89 Aligned_cols=29 Identities=10% Similarity=0.177 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043113 82 INELNQQHNDLLRQLDEEKEQQNMLKQMR 110 (172)
Q Consensus 82 ~~~L~~~~~kl~~~l~~~k~~~~~l~~~~ 110 (172)
...|+.+++.+++++..+++.|..|+...
T Consensus 117 N~~Lh~~ie~l~eEi~~LkeEn~eLkeLa 145 (209)
T 2wvr_A 117 NEKLHKEIEQKDNEIARLKKENKELAEVA 145 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577777777777777777776665544
No 19
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=48.52 E-value=38 Score=20.29 Aligned_cols=34 Identities=9% Similarity=0.196 Sum_probs=29.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043113 122 TPVDELNLQELLQMDSAVDDLHQTFLAKINEKTA 155 (172)
Q Consensus 122 ~~l~~Ls~~eL~~l~~~Le~~l~~V~~r~~~l~~ 155 (172)
..++.+|-+||.+....-++....+++-++.|+.
T Consensus 18 ae~~~~s~deL~~~l~eqee~n~~Le~YID~LL~ 51 (64)
T 2hv8_D 18 AEISSVSRDELMEAIQKQEEINFRLQDYIDRIIV 51 (64)
T ss_dssp TTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999988888888888888888874
No 20
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=48.49 E-value=62 Score=22.06 Aligned_cols=59 Identities=15% Similarity=0.157 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043113 90 NDLLRQLDEEKEQQNMLKQMRRVKETQPRWWETPVDELNLQELLQMDSAVDDLHQTFLAKINEK 153 (172)
Q Consensus 90 ~kl~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~l~~Ls~~eL~~l~~~Le~~l~~V~~r~~~l 153 (172)
.+|+.-+..++...+.|.+.+......+.+ . +|+..|+..-...+.+....|..=.++|
T Consensus 70 ~EL~~~l~sie~dLeDLe~sI~ivE~np~k----F-~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 70 NELRNGLRSIEWDLEDLEETIGIVEANPGK----F-KLPAGDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHH----H-CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHh----c-CCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444555555533332111 1 4788899988888888888887766554
No 21
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=46.79 E-value=80 Score=22.89 Aligned_cols=28 Identities=11% Similarity=0.109 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 043113 123 PVDELNLQELLQMDSAVDDLHQTFLAKI 150 (172)
Q Consensus 123 ~l~~Ls~~eL~~l~~~Le~~l~~V~~r~ 150 (172)
++++||.++|.++-..|-+.+..+.+-.
T Consensus 54 nid~Lse~~L~e~ckELh~~I~~LEeEK 81 (180)
T 1j1e_C 54 ELAGLGFAELQDLARQLHARVDKVDEER 81 (180)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999888877766665443
No 22
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=46.35 E-value=24 Score=16.75 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043113 83 NELNQQHNDLLRQLDEEKE 101 (172)
Q Consensus 83 ~~L~~~~~kl~~~l~~~k~ 101 (172)
++|-.+++.|++.+.++.+
T Consensus 4 delykeledlqerlrklrk 22 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455566666666655544
No 23
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=44.95 E-value=36 Score=20.97 Aligned_cols=29 Identities=17% Similarity=0.370 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043113 82 INELNQQHNDLLRQLDEEKEQQNMLKQMR 110 (172)
Q Consensus 82 ~~~L~~~~~kl~~~l~~~k~~~~~l~~~~ 110 (172)
++.|+.+|.+|.+++..++.+|..|+...
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 66899999999999988888887776554
No 24
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=44.37 E-value=57 Score=20.47 Aligned_cols=64 Identities=17% Similarity=0.227 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043113 80 ARINELNQQHNDLLRQLDEEKEQQNMLKQMRRVKETQPRWWETPVDELNLQELLQMDSAVDDLHQTFLAKINEKTA 155 (172)
Q Consensus 80 ~~~~~L~~~~~kl~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~l~~Ls~~eL~~l~~~Le~~l~~V~~r~~~l~~ 155 (172)
.+|+.+=..|.-|+-+++.++.+|..+.+......+. .+.|..=...|..=+.....|+..|++
T Consensus 13 ~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~------------~~~L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 13 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQ------------REELERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666666666555444332221 233444444455555556666666654
No 25
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=43.48 E-value=36 Score=17.87 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043113 83 NELNQQHNDLLRQLDEEKEQQNMLKQ 108 (172)
Q Consensus 83 ~~L~~~~~kl~~~l~~~k~~~~~l~~ 108 (172)
..|+..++.-.+++..++.+|..|.+
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 45777777777788888777766643
No 26
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=42.73 E-value=55 Score=19.82 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCC
Q 043113 129 LQELLQMDSAVDDLHQTFLAKINEKTAAAAASSSVAPPMYF 169 (172)
Q Consensus 129 ~~eL~~l~~~Le~~l~~V~~r~~~l~~~~~~~s~~~~~~~~ 169 (172)
+.-..++-..|+.-....+..++.|-..-....|++-.|.|
T Consensus 33 LiKYtelnKKLe~~~~~~q~s~~~l~k~~~d~~~~~~~~~~ 73 (74)
T 2q6q_A 33 LEKYVDITKKLEDQNLNLQIKISDLEKKLSDANSTFKEMRF 73 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---------
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHhhccccchhhHhccC
Confidence 44455677777777777777777776665566777666544
No 27
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=42.46 E-value=62 Score=20.38 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043113 83 NELNQQHNDLLRQLDEEKEQQNMLKQMR 110 (172)
Q Consensus 83 ~~L~~~~~kl~~~l~~~k~~~~~l~~~~ 110 (172)
..|+.++..+.+++..++..++.++...
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666555555443
No 28
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=41.01 E-value=77 Score=21.04 Aligned_cols=53 Identities=9% Similarity=0.064 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 043113 89 HNDLLRQLDEEKEQQNMLKQMRRVKETQPRWWETPVDELNLQELLQMDSAVDDLHQT 145 (172)
Q Consensus 89 ~~kl~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~l~~Ls~~eL~~l~~~Le~~l~~ 145 (172)
+++|.++|.+++-+|..|++.++.. |+ -+.+..-|+..+=+.+....-..+..
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~~-g~---~~p~d~~LTp~qKea~I~s~~~~Lss 62 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKSS-GA---VSSDDSILTAAKRESIIVSSSRALGA 62 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-------------CCBCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CC---CCCCCccCCHHHHHHHHHHHHHHHHH
Confidence 3466677777777777777766532 32 11356889999988887776665544
No 29
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=40.72 E-value=1.1e+02 Score=22.91 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043113 131 ELLQMDSAVDDLHQTFLAKINEKT 154 (172)
Q Consensus 131 eL~~l~~~Le~~l~~V~~r~~~l~ 154 (172)
+|......++.....+...+..+.
T Consensus 140 ~l~~~~~~~~~~~~e~~~e~~~l~ 163 (256)
T 3na7_A 140 LALELESLVENEVKNIKETQQIIF 163 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555554444
No 30
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=40.58 E-value=68 Score=20.32 Aligned_cols=31 Identities=13% Similarity=0.375 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043113 81 RINELNQQHNDLLRQLDEEKEQQNMLKQMRR 111 (172)
Q Consensus 81 ~~~~L~~~~~kl~~~l~~~k~~~~~l~~~~~ 111 (172)
.+.+|..+-..|..+++.++.+...|...+.
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666655555555554
No 31
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=40.27 E-value=76 Score=20.76 Aligned_cols=71 Identities=14% Similarity=0.210 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043113 82 INELNQQHNDLLRQLDEEKEQQNMLKQMRRVKETQ-PRWWETPVDELNLQELLQMDSAVDDLHQTFLAKINEK 153 (172)
Q Consensus 82 ~~~L~~~~~kl~~~l~~~k~~~~~l~~~~~~~~~~-~~~~~~~l~~Ls~~eL~~l~~~Le~~l~~V~~r~~~l 153 (172)
++.++.+-.....++...++..+++++......|. ..--+.++|+++ ..+.+...+|++.-..+++|...-
T Consensus 16 ~q~~~~kk~~aekql~~A~e~~eKl~KKrsS~~gs~~~ahs~slD~vD-~~Il~Ak~aL~evt~~l~Er~~RW 87 (101)
T 3teq_A 16 VQYYNIKKQNAEKQLMVAKEGAEKIKKKRNTLFGTFHVAHSSSLDDVD-HKILTAKQALSEATAALRERLHRW 87 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHTCGGGGGTT-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHhhhchheeeehhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444544444445555444322221 000123577776 567777888888888877776543
No 32
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=40.21 E-value=53 Score=18.95 Aligned_cols=31 Identities=23% Similarity=0.473 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043113 80 ARINELNQQHNDLLRQLDEEKEQQNMLKQMR 110 (172)
Q Consensus 80 ~~~~~L~~~~~kl~~~l~~~k~~~~~l~~~~ 110 (172)
+.+++|+++..+|..-++.+++....|+...
T Consensus 17 DqV~eL~qe~k~m~k~lEeEqkARk~LE~~v 47 (56)
T 2w6b_A 17 DEVQELRQDNKKMKKSLEEEQRARKDLEKLV 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666666666666555444444433
No 33
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=39.04 E-value=87 Score=21.06 Aligned_cols=72 Identities=10% Similarity=0.127 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043113 81 RINELNQQHNDLLRQLDEEKEQQNMLKQMRRVKETQPRWWETPVDELNLQELLQMDSAVDDLHQTFLAKINEKT 154 (172)
Q Consensus 81 ~~~~L~~~~~kl~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~l~~Ls~~eL~~l~~~Le~~l~~V~~r~~~l~ 154 (172)
..+....++...+..+.....+...|......+.. .|-.....++++.+|..+...+..+-..|......+.
T Consensus 20 ~ed~a~~~l~~a~~~~~~~~~~L~~L~~~~~~y~~--~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~~l~ 91 (150)
T 3ajw_A 20 EVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRS--NLNTDMGNGIASNRWINYQQFIQTLEKAIEQHRLQLT 91 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TCC--CCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666555544333 2222345788999999999888888777776655544
No 34
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=37.89 E-value=1.9e+02 Score=24.66 Aligned_cols=15 Identities=13% Similarity=0.406 Sum_probs=6.6
Q ss_pred CCCHHHHHHHHHHHH
Q 043113 126 ELNLQELLQMDSAVD 140 (172)
Q Consensus 126 ~Ls~~eL~~l~~~Le 140 (172)
.+++++...++++|+
T Consensus 172 ~vd~~sY~~~QKQLe 186 (562)
T 3ghg_A 172 EVDLKDYEDQQKQLE 186 (562)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred ecchHHHHHHHHHHH
Confidence 344444444444443
No 35
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=37.43 E-value=2.4e+02 Score=26.21 Aligned_cols=13 Identities=15% Similarity=0.371 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 043113 86 NQQHNDLLRQLDE 98 (172)
Q Consensus 86 ~~~~~kl~~~l~~ 98 (172)
..++.++.+++.+
T Consensus 990 ~~e~~~l~~~~~~ 1002 (1080)
T 2dfs_A 990 QEEIAKLRKELHQ 1002 (1080)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 36
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=36.71 E-value=67 Score=20.22 Aligned_cols=28 Identities=7% Similarity=0.192 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043113 83 NELNQQHNDLLRQLDEEKEQQNMLKQMR 110 (172)
Q Consensus 83 ~~L~~~~~kl~~~l~~~k~~~~~l~~~~ 110 (172)
..|+.+++.+.+++..++..|..|+...
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~en~~L~elA 68 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKENKDLAEVA 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777776666554
No 37
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=35.36 E-value=81 Score=19.65 Aligned_cols=27 Identities=7% Similarity=0.207 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043113 83 NELNQQHNDLLRQLDEEKEQQNMLKQM 109 (172)
Q Consensus 83 ~~L~~~~~kl~~~l~~~k~~~~~l~~~ 109 (172)
..|+.+++.+++++..++..|..|...
T Consensus 37 ~~Lh~~ie~~~eEi~~LkeEN~~L~el 63 (79)
T 2zxx_A 37 EKLHKEIEQKDSEIARLRKENKDLAEV 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666667776666666554443
No 38
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=33.97 E-value=71 Score=24.27 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=0.0
Q ss_pred eeecCCcccchhhccccchhhhhhhhhhhc
Q 043113 15 KKIENEDDRLITFSKRGSGIYKKASEIWEA 44 (172)
Q Consensus 15 ~~I~n~~~R~vTfsKRr~GL~KKa~ELs~L 44 (172)
-.|++...-.+|+.||-.|+..|..+|+.=
T Consensus 117 ~~iev~~~~~itmrkri~~Itqrlg~ltL~ 146 (246)
T 1z56_A 117 CRMQDDEVWKVVMELESSAIIRKIAELTLH 146 (246)
T ss_dssp ------------------------------
T ss_pred cCceeCCEEEEEEeehhhHHHhhheeEEee
Confidence 345567777999999999999999998764
No 39
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=33.62 E-value=82 Score=22.62 Aligned_cols=33 Identities=15% Similarity=0.305 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043113 78 SHARINELNQQHNDLLRQLDEEKEQQNMLKQMR 110 (172)
Q Consensus 78 ~~~~~~~L~~~~~kl~~~l~~~k~~~~~l~~~~ 110 (172)
...++..++..-.+|.+.+......+..+.+.+
T Consensus 101 LksRL~~l~~sk~~L~e~L~~q~~~~relERem 133 (170)
T 3l4q_C 101 LKSRIAEIHESRTKLEQELRAQASDNREIDKRM 133 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677677777777776666655554444
No 40
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=33.43 E-value=1.5e+02 Score=21.99 Aligned_cols=30 Identities=10% Similarity=-0.011 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 043113 129 LQELLQMDSAVDDLHQTFLAKINEKTAAAA 158 (172)
Q Consensus 129 ~~eL~~l~~~Le~~l~~V~~r~~~l~~~~~ 158 (172)
.+=+..|...|++.+..|++-.+.|+.++.
T Consensus 174 ~~L~~KF~~lLNeKK~KIR~lq~~Ll~~~~ 203 (213)
T 1ik9_A 174 TDLYKRFILVLNEKKTKIRSLHNKLLNAAQ 203 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344668999999999999999989987654
No 41
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=32.37 E-value=94 Score=19.49 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043113 81 RINELNQQHNDLLRQLDEEKEQQNMLKQMRRV 112 (172)
Q Consensus 81 ~~~~L~~~~~kl~~~l~~~k~~~~~l~~~~~~ 112 (172)
-|..|..+...+..+++.++.++..|...+..
T Consensus 53 YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 53 YILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888888888888777777666543
No 42
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=32.08 E-value=70 Score=18.36 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043113 85 LNQQHNDLLRQLDEEKEQQN 104 (172)
Q Consensus 85 L~~~~~kl~~~l~~~k~~~~ 104 (172)
+...+..+.+++..+++++.
T Consensus 32 v~~~~~~l~~e~~~L~~~~~ 51 (57)
T 2wuj_A 32 VRKDYEIVLRKKTELEAKVN 51 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555544443
No 43
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=29.28 E-value=68 Score=16.93 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043113 80 ARINELNQQHNDLLRQLDEEKEQ 102 (172)
Q Consensus 80 ~~~~~L~~~~~kl~~~l~~~k~~ 102 (172)
+.+.+-+.++.+++.+++.+++.
T Consensus 8 mTLeEtkeQi~~l~~kl~~LkeE 30 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLLALQEE 30 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888777654
No 44
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=29.17 E-value=59 Score=16.11 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043113 82 INELNQQHNDLLRQLDEEKEQ 102 (172)
Q Consensus 82 ~~~L~~~~~kl~~~l~~~k~~ 102 (172)
+.-|++++..|.+++..++=+
T Consensus 4 iaalkqeiaalkkeiaalkfe 24 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFE 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777666665543
No 45
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=29.00 E-value=95 Score=18.86 Aligned_cols=27 Identities=7% Similarity=0.070 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 043113 126 ELNLQELLQMDSAVDDLHQTFLAKINE 152 (172)
Q Consensus 126 ~Ls~~eL~~l~~~Le~~l~~V~~r~~~ 152 (172)
.|+.+++.++.+.|...+-.|++|.-.
T Consensus 3 ~ls~~~~e~ir~IL~~NLykiRqr~~S 29 (70)
T 2ygg_A 3 ALSKDKEEEIRKILRNNLQKTRQRLRS 29 (70)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 378999999999999999999988754
No 46
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=28.55 E-value=97 Score=19.15 Aligned_cols=25 Identities=12% Similarity=0.073 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043113 82 INELNQQHNDLLRQLDEEKEQQNML 106 (172)
Q Consensus 82 ~~~L~~~~~kl~~~l~~~k~~~~~l 106 (172)
...+...+..|..+...++.+...|
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L 62 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQL 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433333
No 47
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT facility, SSPF, nuclear protein; 1.79A {Lassa virus josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Probab=28.43 E-value=97 Score=25.98 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=24.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 043113 123 PVDELNLQELLQMDSAVDDLHQTFLAK 149 (172)
Q Consensus 123 ~l~~Ls~~eL~~l~~~Le~~l~~V~~r 149 (172)
.+.+|+-+||.+|..-||++++.|...
T Consensus 98 kvG~LskdeLm~LasDLeKLK~KV~rt 124 (577)
T 3mwp_A 98 RVGTLTSDDLLILAADLEKLKSKVIRT 124 (577)
T ss_dssp CSSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCcCHHHHHHHHHHHHHHHHHHhcc
Confidence 479999999999999999999998643
No 48
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=27.96 E-value=1.1e+02 Score=18.84 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043113 81 RINELNQQHNDLLRQLDEEKEQQNMLKQMR 110 (172)
Q Consensus 81 ~~~~L~~~~~kl~~~l~~~k~~~~~l~~~~ 110 (172)
-|..|..+...+..+.+.++.+++.|+..+
T Consensus 48 yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 48 HIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477788888888888888877776665544
No 49
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=27.91 E-value=1.3e+02 Score=19.63 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043113 128 NLQELLQMDSAVDDLHQTFLAKINEKTAAA 157 (172)
Q Consensus 128 s~~eL~~l~~~Le~~l~~V~~r~~~l~~~~ 157 (172)
.-.+|..+...+...-..|+.++..+-...
T Consensus 48 ~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~ 77 (127)
T 1ez3_A 48 TKEELEELMSDIKKTANKVRSKLKSIEQSI 77 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888888888888888888876543
No 50
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=27.64 E-value=1.3e+02 Score=19.72 Aligned_cols=60 Identities=22% Similarity=0.278 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 043113 79 HARINELNQQHNDLLRQLDEEKEQQNMLKQMRRVKETQPRWWETPVDELNLQELLQMDSAVDDLHQTFLA 148 (172)
Q Consensus 79 ~~~~~~L~~~~~kl~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~l~~Ls~~eL~~l~~~Le~~l~~V~~ 148 (172)
...+.+|..++.....||.-...+ |+...+... .|.++++..-+..-...+..+...|.+
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQK---LkdAe~~~E-------~DPDevNK~tl~~R~~~Vsalq~Kiae 93 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQK---LKDAEKAVE-------VDPDDVNKSTLQNRRAAVSTLETKLGE 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-------HCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhc-------CCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777888887777777655443 333333322 277777776666666555555544443
No 51
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=27.25 E-value=79 Score=16.96 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=14.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 043113 125 DELNLQELLQMDSAVDDLHQTF 146 (172)
Q Consensus 125 ~~Ls~~eL~~l~~~Le~~l~~V 146 (172)
++.+.+||..|+..|..+-+.+
T Consensus 15 egfspeelaaleselqalekkl 36 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKL 36 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHH
Confidence 4567888888887666554443
No 52
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=27.18 E-value=1.1e+02 Score=18.67 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043113 81 RINELNQQHNDLLRQLDEEKEQQNMLKQMRR 111 (172)
Q Consensus 81 ~~~~L~~~~~kl~~~l~~~k~~~~~l~~~~~ 111 (172)
-|..|..+...|..+++.++.++..|+..+.
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888888888887776665
No 53
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=26.32 E-value=2.1e+02 Score=23.22 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 043113 85 LNQQHNDLLRQLDEEK 100 (172)
Q Consensus 85 L~~~~~kl~~~l~~~k 100 (172)
+..++..++++...++
T Consensus 8 ~~~~~~~l~~~~~~l~ 23 (403)
T 4etp_A 8 LKEKIAALKEKIAALK 23 (403)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444443333
No 54
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=26.19 E-value=13 Score=17.80 Aligned_cols=11 Identities=27% Similarity=0.398 Sum_probs=8.0
Q ss_pred cccchhhcccc
Q 043113 21 DDRLITFSKRG 31 (172)
Q Consensus 21 ~~R~vTfsKRr 31 (172)
+.|++.|.||+
T Consensus 15 sKRRlvf~~rk 25 (26)
T 2zvv_Y 15 SKRRLIFSXXX 25 (26)
T ss_pred hhceEEEEecc
Confidence 45777788876
No 55
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=25.84 E-value=1.5e+02 Score=19.68 Aligned_cols=20 Identities=25% Similarity=0.415 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043113 82 INELNQQHNDLLRQLDEEKE 101 (172)
Q Consensus 82 ~~~L~~~~~kl~~~l~~~k~ 101 (172)
+.+|+.++..+...++.+.+
T Consensus 90 ~~~l~~r~~~l~~~~~~l~~ 109 (133)
T 1fxk_C 90 MESIKSQKNELESTLQKMGE 109 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555444444443
No 56
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=25.67 E-value=1e+02 Score=17.73 Aligned_cols=11 Identities=9% Similarity=0.117 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 043113 88 QHNDLLRQLDE 98 (172)
Q Consensus 88 ~~~kl~~~l~~ 98 (172)
+...|..++..
T Consensus 37 ~n~~L~~~i~~ 47 (61)
T 1t2k_D 37 LNGQLQSEVTL 47 (61)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 57
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=25.01 E-value=85 Score=20.66 Aligned_cols=29 Identities=17% Similarity=0.099 Sum_probs=22.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 043113 123 PVDELNLQELLQMDSAVDDLHQTFLAKIN 151 (172)
Q Consensus 123 ~l~~Ls~~eL~~l~~~Le~~l~~V~~r~~ 151 (172)
++++||.++|.++-..|-+.+..+.+-..
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKY 66 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKF 66 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 67899999999988888777776655443
No 58
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=24.54 E-value=1.2e+02 Score=18.13 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043113 82 INELNQQHNDLLRQLDEEKE 101 (172)
Q Consensus 82 ~~~L~~~~~kl~~~l~~~k~ 101 (172)
=..|+.++.+|..+++++..
T Consensus 34 WaKL~Rk~DKl~~ele~l~~ 53 (65)
T 3sja_C 34 WTKNNRKLDSLDKEINNLKD 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777766544
No 59
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=24.52 E-value=1.1e+02 Score=17.87 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043113 82 INELNQQHNDLLRQLDEEK 100 (172)
Q Consensus 82 ~~~L~~~~~kl~~~l~~~k 100 (172)
+..|..++..|..+...+.
T Consensus 32 ~~~Le~~v~~L~~eN~~L~ 50 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLE 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444443333333
No 60
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=23.84 E-value=3.2e+02 Score=22.86 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043113 82 INELNQQHNDLLRQLDEEKEQQNMLKQMRRVKETQPRWWETPVDEL--NLQELLQMDSAVDDLHQTFLAKINEKTAA 156 (172)
Q Consensus 82 ~~~L~~~~~kl~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~l~~L--s~~eL~~l~~~Le~~l~~V~~r~~~l~~~ 156 (172)
+-.|..+..+++.+++.++.+...+.+.+...... +++.+.| -+.+|.+-...|++.+..+...++.++..
T Consensus 35 ~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~----~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~ 107 (485)
T 3qne_A 35 IIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKA----KEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQ 107 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566666677777777766555555555432221 1122221 13334444445555556666666665543
No 61
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=23.32 E-value=1.2e+02 Score=17.84 Aligned_cols=33 Identities=24% Similarity=0.498 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043113 79 HARINELNQQHNDLLRQLDEEKEQQNMLKQMRR 111 (172)
Q Consensus 79 ~~~~~~L~~~~~kl~~~l~~~k~~~~~l~~~~~ 111 (172)
+..+++|+++...+..=++.+++.+..|+...+
T Consensus 13 kDev~eLk~e~k~~k~~le~eqraRk~LE~~vr 45 (61)
T 3l4f_A 13 KDEVQELRQDNKKMKKSLEEEQRARKDLEKLVR 45 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777666655555554
No 62
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=23.19 E-value=1.7e+02 Score=19.39 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043113 87 QQHNDLLRQLDEEKEQQNMLKQMRRVKETQPRWWETPVDELNLQELLQMDSAVDDLHQTFLAKINEKT 154 (172)
Q Consensus 87 ~~~~kl~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~l~~Ls~~eL~~l~~~Le~~l~~V~~r~~~l~ 154 (172)
..++.|+.++..++..++.+...++...-. =+||..-+......+..+..+.++.+
T Consensus 35 ~~~~~Lq~El~~lr~~~~~l~~~iReLEq~------------NDDLER~~R~t~~SLeD~E~k~n~ai 90 (111)
T 2v66_B 35 KQVSVLEDDLSQTRAIKEQLHKYVRELEQA------------NDDLERAKRATIVSLEDFEQRLNQAI 90 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------chHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345555555555555555555444432211 24444444455555555555554443
No 63
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=23.16 E-value=1.4e+02 Score=19.25 Aligned_cols=29 Identities=10% Similarity=0.094 Sum_probs=24.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 043113 124 VDELNLQELLQMDSAVDDLHQTFLAKINE 152 (172)
Q Consensus 124 l~~Ls~~eL~~l~~~Le~~l~~V~~r~~~ 152 (172)
++.++.+|+..|...|..+...+...+++
T Consensus 112 ~~~l~~~e~~~l~~~l~~l~~~l~~~~~~ 140 (144)
T 1lj9_A 112 LQGLSEVEISQLADYLVRMRKNVSEDWEF 140 (144)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 46789999999999999999888877665
No 64
>4gip_A Fusion glycoprotein F2; PIV5, viral fusion protein, membrane fusion, protease cleava activated form, ectodomain, trimer; HET: NAG; 2.00A {Simian virus 5}
Probab=23.06 E-value=1.4e+02 Score=18.57 Aligned_cols=36 Identities=14% Similarity=0.293 Sum_probs=31.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043113 121 ETPVDELNLQELLQMDSAVDDLHQTFLAKINEKTAA 156 (172)
Q Consensus 121 ~~~l~~Ls~~eL~~l~~~Le~~l~~V~~r~~~l~~~ 156 (172)
+.++++++..++.++...|..++.=|++-++.+-.+
T Consensus 39 ~~~~~~C~~~~v~~Ynktlt~lL~Pi~daL~~I~~~ 74 (81)
T 4gip_A 39 DSPISGCNITSISSYNATVTKLLQPIGENLETIRNQ 74 (81)
T ss_dssp CSCBCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 346899999999999999999999999999877654
No 65
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=22.65 E-value=61 Score=17.39 Aligned_cols=21 Identities=19% Similarity=0.453 Sum_probs=17.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q 043113 123 PVDELNLQELLQMDSAVDDLH 143 (172)
Q Consensus 123 ~l~~Ls~~eL~~l~~~Le~~l 143 (172)
.+.+|++-|+.+|-..|++..
T Consensus 9 ~i~~lTvlE~~eLvk~leekf 29 (40)
T 1dd4_C 9 AIEKLTVSELAELVKKLEDKF 29 (40)
T ss_dssp HHTTSCHHHHHHHHHHHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHHHH
Confidence 567899999999999888643
No 66
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=22.61 E-value=1.6e+02 Score=18.92 Aligned_cols=31 Identities=6% Similarity=0.216 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043113 127 LNLQELLQMDSAVDDLHQTFLAKINEKTAAA 157 (172)
Q Consensus 127 Ls~~eL~~l~~~Le~~l~~V~~r~~~l~~~~ 157 (172)
.+.+||..|...|+.-+..+.+....|..+=
T Consensus 6 ~dpeElr~Fa~~L~~F~d~Lq~~~~~L~~~f 36 (94)
T 3fx7_A 6 MDTEEVREFVGHLERFKELLREEVNSLSNHF 36 (94)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999988888888877543
No 67
>1ov9_A VICH protein; dimer, helix, coiled-coil, DNA binding protein; 2.30A {Vibrio cholerae} SCOP: a.155.1.1
Probab=22.26 E-value=1.1e+02 Score=17.19 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=13.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 043113 125 DELNLQELLQMDSAVDDLHQT 145 (172)
Q Consensus 125 ~~Ls~~eL~~l~~~Le~~l~~ 145 (172)
-+|++++|.++...|......
T Consensus 18 relsle~Lee~~eKl~~Vv~E 38 (50)
T 1ov9_A 18 RELTIEQLEEALDKLTTVVQE 38 (50)
T ss_dssp TTSCHHHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHHH
Confidence 467888877776666555443
No 68
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=21.89 E-value=3.4e+02 Score=22.37 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043113 82 INELNQQHNDLLRQLDEEKEQQNMLKQMRRVKETQPRWWETPVDEL--NLQELLQMDSAVDDLHQTFLAKINEKTAA 156 (172)
Q Consensus 82 ~~~L~~~~~kl~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~l~~L--s~~eL~~l~~~Le~~l~~V~~r~~~l~~~ 156 (172)
+-.|..+..+++.+++.++.+...+.+.+...... +++.+.| ...+|.+-...|++.+..+...++.++..
T Consensus 33 ~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (455)
T 2dq0_A 33 ILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKK----GEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWR 105 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----CCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566777777788887777666666666543221 1122211 12333344445555555666666665543
No 69
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=21.85 E-value=1.4e+02 Score=19.98 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043113 88 QHNDLLRQLDEEKEQQNMLK 107 (172)
Q Consensus 88 ~~~kl~~~l~~~k~~~~~l~ 107 (172)
++.+|+++++..++++..|.
T Consensus 5 e~~~l~~qi~~~ekr~~RLK 24 (123)
T 4dzo_A 5 EVAELKKQVESAELKNQRLK 24 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555554444444333
No 70
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=21.76 E-value=2.1e+02 Score=19.97 Aligned_cols=73 Identities=10% Similarity=0.142 Sum_probs=42.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCHH---HHHHHHHHHHHHHHHHHHHHH
Q 043113 75 KAYSHARINELNQQHNDLLRQLDEEKEQQNMLKQMRRVKETQPRWWETPVDELNLQ---ELLQMDSAVDDLHQTFLAKIN 151 (172)
Q Consensus 75 e~~~~~~~~~L~~~~~kl~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~l~~Ls~~---eL~~l~~~Le~~l~~V~~r~~ 151 (172)
+.+...-.+.+..++..+..++..+.-....+....+ .. +++.++.. .+..+...++.-......+++
T Consensus 24 e~~Ke~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~---~q------~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~ 94 (150)
T 4dci_A 24 PTWKEEAEREISNGIANADQQLAQLEQEGQTVVDQVR---RQ------SANPLDPRVQEQVANIQQQVAGKRSELEEQKR 94 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HT------TSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hc------cCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455667777777777777666554433222222 11 44445533 456677777777777777777
Q ss_pred HHHhh
Q 043113 152 EKTAA 156 (172)
Q Consensus 152 ~l~~~ 156 (172)
+++.+
T Consensus 95 ~l~~q 99 (150)
T 4dci_A 95 NLLQQ 99 (150)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 71
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=21.13 E-value=1.7e+02 Score=18.65 Aligned_cols=31 Identities=10% Similarity=0.101 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043113 125 DELNLQELLQMDSAVDDLHQTFLAKINEKTA 155 (172)
Q Consensus 125 ~~Ls~~eL~~l~~~Le~~l~~V~~r~~~l~~ 155 (172)
..++..+|......+.+..-.+..++..++.
T Consensus 42 ~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~ 72 (93)
T 3t98_B 42 SHITPQDLSMAMQKIYQTFVALAAQLQSIHE 72 (93)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888777777777764
No 72
>1pzq_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.34.3.1
Probab=21.01 E-value=1.2e+02 Score=16.95 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHh
Q 043113 131 ELLQMDSAVDDL-----HQTFLAKINEKTA 155 (172)
Q Consensus 131 eL~~l~~~Le~~-----l~~V~~r~~~l~~ 155 (172)
-|.+|+..|+.+ ...|.+|++.|+.
T Consensus 13 rldelekalealsaedghddvgqrlesllr 42 (60)
T 1pzq_A 13 RLDELEKALEALSAEDGHDDVGQRLESLLR 42 (60)
T ss_dssp HHHHHHHHHHHHTTSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence 345555555543 4557777777663
No 73
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=20.86 E-value=1.1e+02 Score=19.92 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043113 82 INELNQQHNDLLRQLDEEKEQQNML 106 (172)
Q Consensus 82 ~~~L~~~~~kl~~~l~~~k~~~~~l 106 (172)
+..|..+...+++++..++++.+.+
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L 33 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARL 33 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666665544433
No 74
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=20.75 E-value=90 Score=15.32 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043113 131 ELLQMDSAVDDLHQTFLAKINEKT 154 (172)
Q Consensus 131 eL~~l~~~Le~~l~~V~~r~~~l~ 154 (172)
-|..|...+.+.++.|.+++.-|+
T Consensus 5 rlrkfrnkikeklkkigqkiqgll 28 (32)
T 1lyp_A 5 RLRKFRNKIKEKLKKIGQKIQGLL 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 466777778888888888876654
No 75
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=20.00 E-value=2.2e+02 Score=22.85 Aligned_cols=53 Identities=15% Similarity=0.250 Sum_probs=27.6
Q ss_pred HHHHHHHhCCCccCCCCCcchHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043113 53 KAIANRFLGMSQLHNDNIHPLVKA--YSHARINELNQQHNDLLRQLDEEKEQQNMLK 107 (172)
Q Consensus 53 ~~Vl~ry~~~~~~~~~~~~~~~e~--~~~~~~~~L~~~~~kl~~~l~~~k~~~~~l~ 107 (172)
++.+++|.....+. ......++ ..+.++..++..-.+|.+++......+..++
T Consensus 185 ~~~~~~~~~~~~~~--e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 239 (373)
T 3hhm_B 185 KEYIEKFKREGNEK--EIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREID 239 (373)
T ss_dssp HHHHHHHTTTTCCS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhcChH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566776554331 11112222 2345666777777777777776655544443
Done!