Query 043115
Match_columns 196
No_of_seqs 119 out of 1235
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 13:01:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043115.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043115hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02176 putative pectinestera 100.0 1.1E-52 2.3E-57 368.8 21.5 190 3-196 6-202 (340)
2 PLN02497 probable pectinestera 100.0 1.8E-52 3.9E-57 366.2 20.5 183 7-196 4-196 (331)
3 PLN02432 putative pectinestera 100.0 9.6E-52 2.1E-56 356.9 21.3 162 35-196 6-167 (293)
4 PLN02634 probable pectinestera 100.0 8.5E-52 1.9E-56 364.5 20.4 165 32-196 48-228 (359)
5 PLN02665 pectinesterase family 100.0 1.4E-50 3.1E-55 358.3 21.3 158 39-196 67-233 (366)
6 PLN02773 pectinesterase 100.0 4.2E-50 9.1E-55 350.0 20.2 159 38-196 3-176 (317)
7 PLN02304 probable pectinestera 100.0 5.7E-50 1.2E-54 354.8 20.3 158 39-196 74-241 (379)
8 PLN02682 pectinesterase family 100.0 1.2E-49 2.7E-54 352.2 20.3 158 39-196 68-242 (369)
9 PLN02480 Probable pectinestera 100.0 2.3E-49 5E-54 348.5 21.2 157 40-196 48-211 (343)
10 PLN02671 pectinesterase 100.0 5.1E-49 1.1E-53 347.2 20.5 160 37-196 56-232 (359)
11 PLN02933 Probable pectinestera 100.0 6.1E-49 1.3E-53 361.1 19.5 159 38-196 216-379 (530)
12 PLN02488 probable pectinestera 100.0 6.9E-49 1.5E-53 357.6 19.3 157 40-196 197-358 (509)
13 PLN02201 probable pectinestera 100.0 8E-49 1.7E-53 360.2 19.7 159 38-196 204-367 (520)
14 PLN02916 pectinesterase family 100.0 1.2E-48 2.5E-53 357.0 20.5 160 37-196 184-351 (502)
15 PLN02197 pectinesterase 100.0 2.5E-48 5.5E-53 361.1 19.3 157 40-196 275-438 (588)
16 PLN02713 Probable pectinestera 100.0 4.1E-48 8.9E-53 359.2 19.3 157 40-196 250-414 (566)
17 PLN02995 Probable pectinestera 100.0 3.8E-48 8.2E-53 357.8 18.9 158 39-196 222-386 (539)
18 PLN02990 Probable pectinestera 100.0 4.3E-48 9.3E-53 359.4 19.2 158 39-196 258-421 (572)
19 PLN02170 probable pectinestera 100.0 4.6E-48 1E-52 354.6 19.1 158 39-196 224-387 (529)
20 PLN02301 pectinesterase/pectin 100.0 5.5E-48 1.2E-52 356.7 19.1 157 40-196 236-397 (548)
21 PLN02217 probable pectinestera 100.0 6.1E-48 1.3E-52 361.9 19.5 159 38-196 248-411 (670)
22 PLN02506 putative pectinestera 100.0 9.5E-48 2.1E-52 354.8 19.3 159 38-196 230-393 (537)
23 PRK10531 acyl-CoA thioesterase 100.0 2.5E-47 5.5E-52 341.5 21.5 157 40-196 80-296 (422)
24 PLN02708 Probable pectinestera 100.0 7.3E-48 1.6E-52 357.0 18.7 157 40-196 241-404 (553)
25 PLN02484 probable pectinestera 100.0 9.9E-48 2.1E-52 357.9 19.4 159 38-196 270-434 (587)
26 PF01095 Pectinesterase: Pecti 100.0 3.2E-48 7E-53 336.8 15.1 155 42-196 2-161 (298)
27 PLN02416 probable pectinestera 100.0 7.5E-48 1.6E-52 355.9 18.4 157 40-196 230-391 (541)
28 PLN02745 Putative pectinestera 100.0 1.3E-47 2.8E-52 357.4 19.7 157 40-196 285-446 (596)
29 PLN03043 Probable pectinestera 100.0 2.4E-47 5.2E-52 352.6 19.6 157 40-196 223-387 (538)
30 PLN02314 pectinesterase 100.0 3.1E-47 6.7E-52 355.0 19.6 159 38-196 276-439 (586)
31 PLN02468 putative pectinestera 100.0 4.1E-47 8.8E-52 352.7 18.6 157 40-196 258-419 (565)
32 PLN02313 Pectinesterase/pectin 100.0 7E-47 1.5E-51 352.5 18.7 158 39-196 274-436 (587)
33 COG4677 PemB Pectin methyleste 100.0 4.6E-38 1E-42 270.8 16.4 147 50-196 92-279 (405)
34 PLN02698 Probable pectinestera 100.0 9E-36 2E-40 273.5 15.4 127 39-196 213-344 (497)
35 TIGR03805 beta_helix_1 paralle 99.6 4.9E-15 1.1E-19 129.9 15.1 118 55-185 1-130 (314)
36 TIGR03808 RR_plus_rpt_1 twin-a 99.3 3.8E-11 8.3E-16 108.9 13.3 118 53-183 55-178 (455)
37 PF07602 DUF1565: Protein of u 99.2 6.4E-10 1.4E-14 94.5 14.1 127 49-184 12-159 (246)
38 PF14592 Chondroitinas_B: Chon 99.1 4.2E-10 9.2E-15 101.8 10.1 119 53-184 5-144 (425)
39 COG3420 NosD Nitrous oxidase a 98.8 6.2E-08 1.4E-12 85.2 12.4 110 62-186 31-144 (408)
40 PF12708 Pectate_lyase_3: Pect 98.3 4.5E-05 9.8E-10 61.9 14.7 110 53-168 19-140 (225)
41 PLN02188 polygalacturonase/gly 98.1 0.00014 3E-09 66.2 14.3 70 121-190 162-256 (404)
42 PLN03010 polygalacturonase 97.7 0.0019 4.2E-08 58.9 16.1 120 53-172 64-238 (409)
43 PLN02793 Probable polygalactur 97.5 0.0053 1.2E-07 56.6 14.9 61 121-181 184-269 (443)
44 PLN02155 polygalacturonase 97.1 0.023 5.1E-07 51.6 14.8 61 121-181 152-237 (394)
45 COG3866 PelB Pectate lyase [Ca 96.9 0.067 1.4E-06 47.1 15.4 126 54-191 61-207 (345)
46 smart00656 Amb_all Amb_all dom 96.9 0.012 2.6E-07 48.2 10.4 98 81-191 10-123 (190)
47 PLN02671 pectinesterase 96.9 0.017 3.6E-07 52.0 11.8 61 114-181 177-237 (359)
48 PLN03003 Probable polygalactur 96.7 0.049 1.1E-06 50.5 13.4 61 121-181 145-230 (456)
49 PLN02218 polygalacturonase ADP 96.6 0.059 1.3E-06 49.6 13.2 61 121-181 199-284 (431)
50 PF01696 Adeno_E1B_55K: Adenov 96.3 0.36 7.9E-06 43.8 16.0 119 53-191 55-186 (386)
51 PLN02773 pectinesterase 96.2 0.034 7.4E-07 49.2 9.3 62 113-181 120-181 (317)
52 PLN02416 probable pectinestera 96.2 0.078 1.7E-06 50.2 11.8 62 113-181 335-396 (541)
53 PLN02480 Probable pectinestera 96.0 0.063 1.4E-06 48.0 9.8 63 114-183 156-218 (343)
54 smart00722 CASH Domain present 95.7 0.29 6.3E-06 36.4 11.2 99 76-181 3-112 (146)
55 PF01095 Pectinesterase: Pecti 95.6 0.093 2E-06 46.0 9.2 62 114-182 106-167 (298)
56 PLN02708 Probable pectinestera 95.6 0.08 1.7E-06 50.2 9.2 62 113-181 348-409 (553)
57 KOG1777 Putative Zn-finger pro 95.5 0.21 4.6E-06 46.1 11.3 136 50-196 30-225 (625)
58 PF00544 Pec_lyase_C: Pectate 95.4 0.028 6E-07 46.4 5.0 107 74-191 6-137 (200)
59 PLN02634 probable pectinestera 95.4 0.13 2.8E-06 46.3 9.3 62 114-182 173-234 (359)
60 PLN02304 probable pectinestera 95.3 0.13 2.9E-06 46.5 9.2 62 114-182 186-247 (379)
61 PLN02995 Probable pectinestera 95.3 0.096 2.1E-06 49.6 8.6 63 113-182 330-392 (539)
62 PLN02713 Probable pectinestera 95.2 0.13 2.8E-06 49.0 9.4 61 114-181 359-419 (566)
63 PLN02201 probable pectinestera 95.2 0.14 3E-06 48.3 9.5 63 113-182 311-373 (520)
64 PLN02916 pectinesterase family 95.2 0.15 3.2E-06 47.8 9.6 62 113-181 295-356 (502)
65 PLN02170 probable pectinestera 95.2 0.11 2.4E-06 49.0 8.8 64 113-183 331-394 (529)
66 PLN02682 pectinesterase family 95.2 0.13 2.8E-06 46.5 8.8 61 114-181 187-247 (369)
67 PLN02990 Probable pectinestera 95.2 0.12 2.6E-06 49.2 9.0 62 113-181 365-426 (572)
68 PLN02217 probable pectinestera 95.1 0.11 2.4E-06 50.2 8.7 62 113-181 355-416 (670)
69 PLN02506 putative pectinestera 95.1 0.12 2.5E-06 49.0 8.6 63 113-182 337-399 (537)
70 PLN02933 Probable pectinestera 95.0 0.16 3.6E-06 47.9 9.4 62 113-181 323-384 (530)
71 PF05048 NosD: Periplasmic cop 95.0 0.44 9.5E-06 39.5 11.1 113 60-187 2-126 (236)
72 PLN02314 pectinesterase 95.0 0.17 3.7E-06 48.4 9.5 62 113-181 383-444 (586)
73 PLN02468 putative pectinestera 95.0 0.16 3.4E-06 48.4 9.2 62 113-181 363-424 (565)
74 PLN02432 putative pectinestera 95.0 0.11 2.5E-06 45.4 7.7 62 113-181 111-172 (293)
75 PLN02745 Putative pectinestera 95.0 0.18 3.9E-06 48.3 9.5 62 113-181 390-451 (596)
76 PLN02197 pectinesterase 94.9 0.19 4.1E-06 48.1 9.6 62 113-181 382-443 (588)
77 PLN02484 probable pectinestera 94.9 0.15 3.2E-06 48.8 8.7 62 113-181 378-439 (587)
78 PLN02301 pectinesterase/pectin 94.8 0.17 3.7E-06 48.0 8.9 62 113-181 341-402 (548)
79 PLN02497 probable pectinestera 94.7 0.14 3E-06 45.7 7.4 61 114-181 141-201 (331)
80 PLN02488 probable pectinestera 94.6 0.23 4.9E-06 46.6 9.1 62 113-181 302-363 (509)
81 TIGR03805 beta_helix_1 paralle 94.6 0.53 1.2E-05 41.4 11.1 69 116-184 79-152 (314)
82 PLN03043 Probable pectinestera 94.6 0.25 5.4E-06 46.8 9.3 62 113-181 331-392 (538)
83 PLN02176 putative pectinestera 94.6 0.15 3.3E-06 45.6 7.5 62 114-182 147-208 (340)
84 PLN02698 Probable pectinestera 94.5 0.2 4.4E-06 46.9 8.5 61 114-181 289-349 (497)
85 PLN02313 Pectinesterase/pectin 94.4 0.2 4.4E-06 47.9 8.5 62 113-181 380-441 (587)
86 PLN02665 pectinesterase family 94.3 0.14 3E-06 46.2 6.8 62 114-182 178-239 (366)
87 PRK10531 acyl-CoA thioesterase 93.7 0.58 1.3E-05 43.0 9.7 62 114-182 229-302 (422)
88 COG5434 PGU1 Endopygalactoruna 93.7 0.26 5.7E-06 46.6 7.6 59 121-181 268-340 (542)
89 PLN02188 polygalacturonase/gly 90.2 3.5 7.5E-05 37.8 10.4 63 121-184 185-280 (404)
90 TIGR03808 RR_plus_rpt_1 twin-a 90.1 6.1 0.00013 36.7 11.9 87 89-185 114-203 (455)
91 PF12541 DUF3737: Protein of u 89.5 3.8 8.2E-05 35.5 9.4 41 147-190 191-231 (277)
92 PLN02218 polygalacturonase ADP 89.2 4.9 0.00011 37.1 10.6 64 120-184 221-317 (431)
93 PF13229 Beta_helix: Right han 88.6 1 2.2E-05 33.7 5.0 63 117-185 25-90 (158)
94 PLN02793 Probable polygalactur 87.4 7.6 0.00017 36.0 10.7 65 120-185 206-303 (443)
95 PF00295 Glyco_hydro_28: Glyco 86.2 1.7 3.7E-05 38.3 5.6 39 144-182 144-185 (326)
96 COG4677 PemB Pectin methyleste 85.2 3 6.5E-05 37.3 6.5 64 117-181 215-284 (405)
97 COG5434 PGU1 Endopygalactoruna 84.1 1.2 2.7E-05 42.1 3.9 63 122-188 246-313 (542)
98 PLN02155 polygalacturonase 81.8 10 0.00022 34.6 8.8 62 121-183 175-269 (394)
99 PLN03003 Probable polygalactur 79.6 12 0.00025 35.0 8.5 63 121-184 168-263 (456)
100 PF13229 Beta_helix: Right han 78.5 5 0.00011 29.9 4.9 61 118-184 48-113 (158)
101 PLN03010 polygalacturonase 76.7 29 0.00063 31.9 10.1 62 121-183 187-281 (409)
102 TIGR03804 para_beta_helix para 72.6 11 0.00024 22.8 4.5 36 148-183 6-42 (44)
103 PF00295 Glyco_hydro_28: Glyco 68.9 10 0.00023 33.3 5.2 66 118-188 95-168 (326)
104 PRK14864 putative biofilm stre 63.8 37 0.0008 25.3 6.5 43 41-85 53-101 (104)
105 PRK10123 wcaM putative colanic 60.1 1.1E+02 0.0024 27.4 9.7 68 61-134 52-133 (464)
106 COG0848 ExbD Biopolymer transp 55.4 37 0.0008 26.3 5.5 56 26-81 47-112 (137)
107 PF05048 NosD: Periplasmic cop 50.7 1.4E+02 0.003 24.4 10.4 57 121-183 86-144 (236)
108 PF03211 Pectate_lyase: Pectat 48.9 1.6E+02 0.0035 24.7 9.7 52 117-172 77-128 (215)
109 PF07172 GRP: Glycine rich pro 48.0 6.1 0.00013 28.9 0.0 22 5-26 3-26 (95)
110 PF12541 DUF3737: Protein of u 45.5 2.1E+02 0.0045 25.0 9.4 73 76-160 128-223 (277)
111 PRK09752 adhesin; Provisional 44.0 3.7E+02 0.0081 28.4 11.7 19 166-184 175-193 (1250)
112 COG3866 PelB Pectate lyase [Ca 38.9 92 0.002 27.8 5.9 41 142-182 116-165 (345)
113 PRK10718 RpoE-regulated lipopr 37.1 1.4E+02 0.0031 24.6 6.4 52 9-66 5-67 (191)
114 PF12708 Pectate_lyase_3: Pect 36.6 1E+02 0.0022 24.3 5.6 14 122-135 120-133 (225)
115 PF14592 Chondroitinas_B: Chon 35.4 75 0.0016 29.5 5.0 56 124-182 200-256 (425)
116 COG2247 LytB Putative cell wal 34.4 17 0.00036 32.5 0.6 14 71-84 54-68 (337)
117 COG3521 Predicted component of 32.1 72 0.0016 25.6 3.9 52 8-74 6-57 (159)
118 COG4771 FepA Outer membrane re 30.3 1E+02 0.0023 30.2 5.2 80 1-80 1-102 (699)
119 PRK10378 inactive ferrous ion 29.4 92 0.002 28.4 4.5 45 36-80 49-100 (375)
120 COG3056 Uncharacterized lipopr 29.4 74 0.0016 26.3 3.5 17 8-24 17-33 (204)
121 KOG1777 Putative Zn-finger pro 28.5 65 0.0014 30.3 3.4 13 184-196 305-317 (625)
122 TIGR01965 VCBS_repeat VCBS rep 27.8 1.7E+02 0.0037 21.5 5.0 58 41-107 28-89 (99)
123 TIGR03352 VI_chp_3 type VI sec 27.3 76 0.0017 24.8 3.2 9 70-78 86-94 (146)
124 TIGR00247 conserved hypothetic 27.1 25 0.00055 31.2 0.5 24 36-61 36-59 (342)
125 PF10460 Peptidase_M30: Peptid 26.5 50 0.0011 30.0 2.3 25 69-94 339-363 (366)
126 smart00710 PbH1 Parallel beta- 26.4 94 0.002 15.3 2.7 13 151-163 3-15 (26)
127 TIGR02804 ExbD_2 TonB system t 25.6 2.5E+02 0.0055 20.7 5.7 11 38-48 50-60 (121)
128 TIGR03656 IsdC heme uptake pro 24.9 3.7E+02 0.008 22.7 7.0 45 36-87 32-76 (217)
129 smart00656 Amb_all Amb_all dom 23.3 3.1E+02 0.0067 22.1 6.2 39 145-183 34-81 (190)
130 PF02472 ExbD: Biopolymer tran 22.1 64 0.0014 23.7 1.8 12 52-63 75-86 (130)
131 PF07265 TAP35_44: Tapetum spe 21.6 71 0.0015 23.9 1.9 46 1-47 1-48 (119)
132 PF11119 DUF2633: Protein of u 20.4 47 0.001 22.3 0.7 13 9-21 11-23 (59)
133 PF00544 Pec_lyase_C: Pectate 20.3 3.1E+02 0.0067 22.2 5.7 36 148-183 44-96 (200)
No 1
>PLN02176 putative pectinesterase
Probab=100.00 E-value=1.1e-52 Score=368.84 Aligned_cols=190 Identities=34% Similarity=0.482 Sum_probs=166.7
Q ss_pred ccccchhhhhhHhhhheeeeccccCCCCCCCCCCCCcEEEEEcCCCCCCcchHHHHHhhCCCCCCceEEEEEcCCeEeee
Q 043115 3 NYSQNVSILVVATTIVFASITATCGSTATIPKDFSAAVLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREK 82 (196)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~V~~~g~g~y~tIq~AI~aa~~g~~~~~~I~I~~G~Y~E~ 82 (196)
-||-+|++|.+..|.+-.+.-.++ ....++..+.+++|+++|+|+|+|||+|||++|+++++|++|+|+||+|+|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~Va~dGsGdf~TIq~AIdavP~~~~~~~~I~Ik~GvY~Ek 81 (340)
T PLN02176 6 FHSFCYSYFKVCLLVMTLAYGSAE----YDAASSQIAKTIIVNPNDARYFKTVQSAIDSIPLQNQNWIRILIQNGIYREK 81 (340)
T ss_pred ehhhhHHHHHHHHHHHHHhhcccc----ccccccccCceEEECCCCCCCccCHHHHHhhchhcCCceEEEEECCcEEEEE
Confidence 478888777655544433322121 1223455666899999999999999999999999988899999999999999
Q ss_pred EEEcCCCCceEecCCCCCCeEEEeCCCCCCCCCeEEEEEcCcEEEEEEEEEecCCC-------CCcEEEEEEeCCcEEEE
Q 043115 83 IIVPANKPFITISGTKASHTKITWSDGGSILDSATFTVLASHFVARSLTIQNTYGS-------YGKAVALRVSADRAAFY 155 (196)
Q Consensus 83 v~I~~~k~~ItL~G~~~~~v~I~~~~~~~~~~~~~l~v~a~~v~~~~lti~Ns~g~-------~~~a~al~v~~d~~~~~ 155 (196)
|.||+.||+|+|+|++++.|+|+++++..+..+++|.+.+++|+++||||+|+++. .+||+||++.+|++.|+
T Consensus 82 V~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~ 161 (340)
T PLN02176 82 VTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTSYASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAII 161 (340)
T ss_pred EEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEEECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEE
Confidence 99999999999999999999999988777788999999999999999999999852 36999999999999999
Q ss_pred ccEEeecceEEEecCCceeEEcCEEEccceeEecCcceeeC
Q 043115 156 GCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNANSLFE 196 (196)
Q Consensus 156 ~c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~G~g~a~fe 196 (196)
+|+|.|+|||||.+.|||||++|+|||+||||||+|+++||
T Consensus 162 ~C~f~G~QDTLy~~~gRqyf~~CyIeG~VDFIFG~a~a~Fe 202 (340)
T PLN02176 162 DSSFDGFQDTLFDGKGRHYYKRCVISGGIDFIFGYAQSIFE 202 (340)
T ss_pred ccEEecccceeEeCCcCEEEEecEEEecccEEecCceEEEe
Confidence 99999999999999999999999999999999999999997
No 2
>PLN02497 probable pectinesterase
Probab=100.00 E-value=1.8e-52 Score=366.24 Aligned_cols=183 Identities=38% Similarity=0.637 Sum_probs=165.9
Q ss_pred chhhhhhHhhhheeeeccccCCCCCCCCCCC--CcEEEEEcCCCCCCcchHHHHHhhCCCCCCceEEEEEcCCeEeeeEE
Q 043115 7 NVSILVVATTIVFASITATCGSTATIPKDFS--AAVLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKII 84 (196)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~a~~i~V~~~g~g~y~tIq~AI~aa~~g~~~~~~I~I~~G~Y~E~v~ 84 (196)
.|.+++|++|+-|...-+.. +.|. .+.+++|+++|+|+|+|||+|||++|+++++|++|+|+||+|+|+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~i~Va~dGsGdf~TIq~AIdavP~~~~~~~~I~Ik~G~Y~EkV~ 76 (331)
T PLN02497 4 HRIIIGLIALCCFCLPHLIE-------AKPFGVYQQQVFVDQSGHGNFTTIQSAIDSVPSNNKHWFCINVKAGLYREKVK 76 (331)
T ss_pred eeehHHHHHHHHhhcchhhh-------cCCccccceEEEECCCCCCCccCHHHHHhhccccCCceEEEEEeCcEEEEEEE
Confidence 47889999998887743321 1122 23678999999999999999999999998899999999999999999
Q ss_pred EcCCCCceEecCCCCCCeEEEeCCCCCCCCCeEEEEEcCcEEEEEEEEEecCCC--------CCcEEEEEEeCCcEEEEc
Q 043115 85 VPANKPFITISGTKASHTKITWSDGGSILDSATFTVLASHFVARSLTIQNTYGS--------YGKAVALRVSADRAAFYG 156 (196)
Q Consensus 85 I~~~k~~ItL~G~~~~~v~I~~~~~~~~~~~~~l~v~a~~v~~~~lti~Ns~g~--------~~~a~al~v~~d~~~~~~ 156 (196)
||++||+|+|+|++++.++|++++..++..+++|.+.+++|+++||||+|+++. .+||+||++.+|++.|++
T Consensus 77 Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~ 156 (331)
T PLN02497 77 IPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFSTLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYS 156 (331)
T ss_pred ecCCCCcEEEEecCCCCceEEEeccccccCceEEEEecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEe
Confidence 999999999999999999999998877888999999999999999999999852 359999999999999999
Q ss_pred cEEeecceEEEecCCceeEEcCEEEccceeEecCcceeeC
Q 043115 157 CRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNANSLFE 196 (196)
Q Consensus 157 c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~G~g~a~fe 196 (196)
|+|.|+|||||.+.|||||++|+|||+||||||+|+|+||
T Consensus 157 C~f~G~QDTLy~~~gRqyf~~C~IeG~VDFIFG~g~a~Fe 196 (331)
T PLN02497 157 CGFAGVQDTLWDSDGRHYFKRCTIQGAVDFIFGSGQSIYE 196 (331)
T ss_pred eEEeccccceeeCCCcEEEEeCEEEecccEEccCceEEEE
Confidence 9999999999999999999999999999999999999997
No 3
>PLN02432 putative pectinesterase
Probab=100.00 E-value=9.6e-52 Score=356.95 Aligned_cols=162 Identities=74% Similarity=1.184 Sum_probs=156.1
Q ss_pred CCCCcEEEEEcCCCCCCcchHHHHHhhCCCCCCceEEEEEcCCeEeeeEEEcCCCCceEecCCCCCCeEEEeCCCCCCCC
Q 043115 35 DFSAAVLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDGGSILD 114 (196)
Q Consensus 35 ~~~~a~~i~V~~~g~g~y~tIq~AI~aa~~g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~~~~~~~~ 114 (196)
+.+.+.+++|+++|+|+|+|||+|||++|.++++|++|+|+||+|+|+|.||++||+|+|+|++++.++|+++++..+..
T Consensus 6 ~~~~~~~~~Va~~Gsg~f~TIq~Aida~p~~~~~~~~I~I~~G~Y~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~ 85 (293)
T PLN02432 6 DLSTAILIRVDQSGKGDFRKIQDAIDAVPSNNSQLVFIWVKPGIYREKVVVPADKPFITLSGTQASNTIITWNDGGDIFE 85 (293)
T ss_pred cccceEEEEECCCCCCCccCHHHHHhhccccCCceEEEEEeCceeEEEEEEeccCceEEEEEcCCCCeEEEecCCccccc
Confidence 45678899999999999999999999999988889999999999999999999999999999999999999998877889
Q ss_pred CeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEccceeEecCccee
Q 043115 115 SATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNANSL 194 (196)
Q Consensus 115 ~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~G~g~a~ 194 (196)
++++.+.+++|+++||||+|+++..+||+||++.+|++.|++|+|.|+|||||.+.||+||+||+|+|+||||||.|+++
T Consensus 86 saT~~v~a~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~~gr~yf~~c~I~G~VDFIFG~g~a~ 165 (293)
T PLN02432 86 SPTLSVLASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQDTLLDDTGRHYYRNCYIEGATDFICGNAASL 165 (293)
T ss_pred ceEEEEECCCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEecccceeEECCCCEEEEeCEEEecccEEecCceEE
Confidence 99999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred eC
Q 043115 195 FE 196 (196)
Q Consensus 195 fe 196 (196)
||
T Consensus 166 Fe 167 (293)
T PLN02432 166 FE 167 (293)
T ss_pred EE
Confidence 97
No 4
>PLN02634 probable pectinesterase
Probab=100.00 E-value=8.5e-52 Score=364.53 Aligned_cols=165 Identities=44% Similarity=0.738 Sum_probs=155.6
Q ss_pred CCCCCCCcEEEEEcCCCCCCcchHHHHHhhCCCCCCceEEEEEcCCeEeeeEEEcCCCCceEecCCCCCCeEEEeCCCC-
Q 043115 32 IPKDFSAAVLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDGG- 110 (196)
Q Consensus 32 ~~~~~~~a~~i~V~~~g~g~y~tIq~AI~aa~~g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~~~~- 110 (196)
||+.|+.+.+++|+++|+|+|+|||+|||++|+++++|++|+|+||+|+|+|.|+++||+|||+|++.+.|+|++++..
T Consensus 48 ~~~~~~~~~~i~Va~dGsGdf~TIQaAIda~P~~~~~r~vI~Ik~GvY~EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~ 127 (359)
T PLN02634 48 KWVGPSGHKVITVDANGHGDFRSVQDAVDSVPKNNTMSVTIKINAGFYREKVVVPATKPYITFQGAGRDVTAIEWHDRAS 127 (359)
T ss_pred cccCCCCCccEEECCCCCCCccCHHHHHhhCcccCCccEEEEEeCceEEEEEEEcCCCCeEEEEecCCCceEEEeccccc
Confidence 6999999999999999999999999999999999889999999999999999999999999999999999999986532
Q ss_pred ---------CCCCCeEEEEEcCcEEEEEEEEEecCCC------CCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeE
Q 043115 111 ---------SILDSATFTVLASHFVARSLTIQNTYGS------YGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYY 175 (196)
Q Consensus 111 ---------~~~~~~~l~v~a~~v~~~~lti~Ns~g~------~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f 175 (196)
++..+++|.|.+++|+++||||+|+++. .+||+|+++.+|++.|++|+|.|+|||||.+.||+||
T Consensus 128 ~~~~~g~~~~T~~SaTv~V~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~~gR~yf 207 (359)
T PLN02634 128 DRGANGQQLRTYQTASVTVYANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDDAGRHYF 207 (359)
T ss_pred ccCCCCcccccccceEEEEECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccceeeeCCCCEEE
Confidence 3568899999999999999999999742 4699999999999999999999999999999999999
Q ss_pred EcCEEEccceeEecCcceeeC
Q 043115 176 SKCIIEGATDFISGNANSLFE 196 (196)
Q Consensus 176 ~~c~I~G~vDfI~G~g~a~fe 196 (196)
+||+|||+||||||+|+++||
T Consensus 208 ~~CyIeG~VDFIFG~g~a~Fe 228 (359)
T PLN02634 208 KECYIEGSIDFIFGNGRSMYK 228 (359)
T ss_pred EeeEEcccccEEcCCceEEEe
Confidence 999999999999999999997
No 5
>PLN02665 pectinesterase family protein
Probab=100.00 E-value=1.4e-50 Score=358.34 Aligned_cols=158 Identities=41% Similarity=0.747 Sum_probs=149.6
Q ss_pred cEEEEEcCCCCCCcchHHHHHhhCCCCCCceEEEEEcCCeEeeeEEEcCCCCceEecCCCCCCeEEEeCCCC---CCCCC
Q 043115 39 AVLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDGG---SILDS 115 (196)
Q Consensus 39 a~~i~V~~~g~g~y~tIq~AI~aa~~g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~~~~---~~~~~ 115 (196)
..+++|+++|+|+|+|||+|||++|+++++|++|+|+||+|+|+|.||++||+|||+|++.+.++|++++.. ++..+
T Consensus 67 ~~~i~V~~dG~Gdf~TIq~AIdaiP~~~~~r~vI~Ik~GvY~EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~S 146 (366)
T PLN02665 67 PRIIKVRKDGSGDFKTITDAIKSIPAGNTQRVIIDIGPGEYNEKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYS 146 (366)
T ss_pred ceEEEEcCCCCCCccCHHHHHhhCcccCCceEEEEEeCcEEEEEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcce
Confidence 378999999999999999999999999889999999999999999999999999999999999999998653 46789
Q ss_pred eEEEEEcCcEEEEEEEEEecCCC------CCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEccceeEec
Q 043115 116 ATFTVLASHFVARSLTIQNTYGS------YGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISG 189 (196)
Q Consensus 116 ~~l~v~a~~v~~~~lti~Ns~g~------~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~G 189 (196)
++|.|.+++|+++||||+|+++. .+||+||++.+|++.|++|+|.|+|||||.+.|||||+||+|||+||||||
T Consensus 147 aTv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~~gr~yf~~CyIeG~VDFIFG 226 (366)
T PLN02665 147 ATLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDDKGRHFFKDCYIEGTVDFIFG 226 (366)
T ss_pred EEEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccceeEeCCCCEEEEeeEEeeccceecc
Confidence 99999999999999999999852 359999999999999999999999999999999999999999999999999
Q ss_pred CcceeeC
Q 043115 190 NANSLFE 196 (196)
Q Consensus 190 ~g~a~fe 196 (196)
+|+++||
T Consensus 227 ~g~a~fe 233 (366)
T PLN02665 227 SGKSLYL 233 (366)
T ss_pred ccceeeE
Confidence 9999997
No 6
>PLN02773 pectinesterase
Probab=100.00 E-value=4.2e-50 Score=350.00 Aligned_cols=159 Identities=42% Similarity=0.728 Sum_probs=148.7
Q ss_pred CcEEEEEcCCCCCCcchHHHHHhhCCCCCCceEEEEEcCCeEeeeEEEcCCCCceEecCCCCCCeEEEeCCCC-------
Q 043115 38 AAVLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDGG------- 110 (196)
Q Consensus 38 ~a~~i~V~~~g~g~y~tIq~AI~aa~~g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~~~~------- 110 (196)
....|+|+++|+|+|+|||+|||++|.++++|++|+|+||+|+|+|.|+++||+|||+|++++.|+|++++..
T Consensus 3 ~~~~i~Va~dGsGdf~TIq~Aida~P~~~~~~~~I~Ik~G~Y~E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~ 82 (317)
T PLN02773 3 ARRVLRVAQDGSGDYCTVQDAIDAVPLCNRCRTVIRVAPGVYRQPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQ 82 (317)
T ss_pred cceEEEECCCCCCCccCHHHHHhhchhcCCceEEEEEeCceEEEEEEECcCCccEEEEeCCCCceEEEccCccccccccc
Confidence 3467899999999999999999999998888999999999999999999999999999999999999987531
Q ss_pred -------CCCCCeEEEEEcCcEEEEEEEEEecCCC-CCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEc
Q 043115 111 -------SILDSATFTVLASHFVARSLTIQNTYGS-YGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEG 182 (196)
Q Consensus 111 -------~~~~~~~l~v~a~~v~~~~lti~Ns~g~-~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G 182 (196)
++..+++|.|.+++|+++||||+|+++. .+||+||++.+|++.|++|+|.|+|||||.+.||+||+||+|||
T Consensus 83 ~~~~~g~gT~~SaTv~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~gr~yf~~c~IeG 162 (317)
T PLN02773 83 ASRVIGTGTFGCGTVIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLRDCYIEG 162 (317)
T ss_pred cccccCcCccCceEEEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCCCCEEEEeeEEee
Confidence 3567899999999999999999999875 46999999999999999999999999999999999999999999
Q ss_pred cceeEecCcceeeC
Q 043115 183 ATDFISGNANSLFE 196 (196)
Q Consensus 183 ~vDfI~G~g~a~fe 196 (196)
+||||||+|+++||
T Consensus 163 ~VDFIFG~g~a~Fe 176 (317)
T PLN02773 163 SVDFIFGNSTALLE 176 (317)
T ss_pred cccEEeeccEEEEE
Confidence 99999999999997
No 7
>PLN02304 probable pectinesterase
Probab=100.00 E-value=5.7e-50 Score=354.79 Aligned_cols=158 Identities=39% Similarity=0.687 Sum_probs=149.1
Q ss_pred cEEEEEcCCCCCCcchHHHHHhhCCCCCCceEEEEEcCCeEeeeEEEcCCCCceEecCCCCCCeEEEeCCCC----CCCC
Q 043115 39 AVLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDGG----SILD 114 (196)
Q Consensus 39 a~~i~V~~~g~g~y~tIq~AI~aa~~g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~~~~----~~~~ 114 (196)
..+++|+++|+|+|+|||+|||++|+++++|++|+|+||+|+|+|.|+++||+|+|+|++.+.|+|+|++.. +++.
T Consensus 74 ~~~i~Va~dGsGdf~TIQ~AIdavP~~~~~r~vI~Ik~GvY~EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~ 153 (379)
T PLN02304 74 TSILCVDPNGCCNFTTVQSAVDAVGNFSQKRNVIWINSGIYYEKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFY 153 (379)
T ss_pred ceEEEECCCCCCCccCHHHHHhhCcccCCCcEEEEEeCeEeEEEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccc
Confidence 368899999999999999999999999889999999999999999999999999999999999999998753 4678
Q ss_pred CeEEEEEcCcEEEEEEEEEecCC-----C-CCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEccceeEe
Q 043115 115 SATFTVLASHFVARSLTIQNTYG-----S-YGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFIS 188 (196)
Q Consensus 115 ~~~l~v~a~~v~~~~lti~Ns~g-----~-~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~ 188 (196)
+++|.|.+++|+++||||+|+++ . .+||+||++.+|++.|++|+|.|+|||||.+.||+||+||+|||+|||||
T Consensus 154 SaTv~v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~~gR~Yf~~CyIeG~VDFIF 233 (379)
T PLN02304 154 SASVQVFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIF 233 (379)
T ss_pred eEEEEEECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccceeEeCCCCEEEEeeEEcccccEEe
Confidence 99999999999999999999973 2 46999999999999999999999999999999999999999999999999
Q ss_pred cCcceeeC
Q 043115 189 GNANSLFE 196 (196)
Q Consensus 189 G~g~a~fe 196 (196)
|+|+|+||
T Consensus 234 G~g~A~Fe 241 (379)
T PLN02304 234 GDARSLYE 241 (379)
T ss_pred ccceEEEE
Confidence 99999997
No 8
>PLN02682 pectinesterase family protein
Probab=100.00 E-value=1.2e-49 Score=352.20 Aligned_cols=158 Identities=49% Similarity=0.753 Sum_probs=146.9
Q ss_pred cEEEEEcC-CCCCCcchHHHHHhhCCCCCCceEEEEEcCCeEeeeEEEcCCCCceEecCCCCCCeEEEeCCCC-------
Q 043115 39 AVLIRVEK-YGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDGG------- 110 (196)
Q Consensus 39 a~~i~V~~-~g~g~y~tIq~AI~aa~~g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~~~~------- 110 (196)
..+++|++ +|.|+|+|||+|||++|.++++|++|+|+||+|+|+|.|++.||+|||+|++++.|+|++++..
T Consensus 68 ~~~i~V~~~~gsGdf~TIQ~AIdavP~~~~~r~vI~Ik~G~Y~EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g 147 (369)
T PLN02682 68 SYTIVVDKKPAAGDFTTIQAAIDSLPVINLVRVVIKVNAGTYREKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGG 147 (369)
T ss_pred CeEEEEeCCCCCCCccCHHHHHhhccccCCceEEEEEeCceeeEEEEEeccCceEEEEecCCCccEEEeccccCccCCCC
Confidence 45799998 5889999999999999998888999999999999999999999999999999999999986432
Q ss_pred ---CCCCCeEEEEEcCcEEEEEEEEEecCC-----C-CCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEE
Q 043115 111 ---SILDSATFTVLASHFVARSLTIQNTYG-----S-YGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIE 181 (196)
Q Consensus 111 ---~~~~~~~l~v~a~~v~~~~lti~Ns~g-----~-~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~ 181 (196)
++..+++|.|.+++|+++||||+|+++ . .+||+||++.+|++.|++|+|.|+|||||.+.|||||+||+||
T Consensus 148 ~~~gT~~SAT~~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~~gRqyf~~C~Ie 227 (369)
T PLN02682 148 RPLGTYGSATFAVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDTLYDHLGRHYFKDCYIE 227 (369)
T ss_pred CccccccceEEEEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccceEECCCCEEEEeeEEc
Confidence 366889999999999999999999983 2 4599999999999999999999999999999999999999999
Q ss_pred ccceeEecCcceeeC
Q 043115 182 GATDFISGNANSLFE 196 (196)
Q Consensus 182 G~vDfI~G~g~a~fe 196 (196)
|+||||||.|.++||
T Consensus 228 G~VDFIFG~g~a~Fe 242 (369)
T PLN02682 228 GSVDFIFGNGLSLYE 242 (369)
T ss_pred ccccEEecCceEEEE
Confidence 999999999999997
No 9
>PLN02480 Probable pectinesterase
Probab=100.00 E-value=2.3e-49 Score=348.53 Aligned_cols=157 Identities=45% Similarity=0.755 Sum_probs=147.3
Q ss_pred EEEEEcCCCCCCcchHHHHHhhCCCCCCceEEEEEcCCeEeeeEEEcCCCCceEecCCCCCCeEEEeCCCC-CCCCCeEE
Q 043115 40 VLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDGG-SILDSATF 118 (196)
Q Consensus 40 ~~i~V~~~g~g~y~tIq~AI~aa~~g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~~~~-~~~~~~~l 118 (196)
.+++|+++|.|+|+|||+|||++|+++++|++|+|+||+|+|+|.|+++||+|||+|++.+.++|+++... .+..+++|
T Consensus 48 ~~~~Va~~G~g~f~TIQ~AIdaap~~~~~~~~I~Ik~GvY~E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTv 127 (343)
T PLN02480 48 RTIIVDINGKGDFTSVQSAIDAVPVGNSEWIIVHLRKGVYREKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATF 127 (343)
T ss_pred cEEEECCCCCCCcccHHHHHhhCccCCCceEEEEEcCcEEEEEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEE
Confidence 68899999999999999999999999889999999999999999999999999999999999999998643 23578999
Q ss_pred EEEcCcEEEEEEEEEecCCC------CCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEccceeEecCcc
Q 043115 119 TVLASHFVARSLTIQNTYGS------YGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNAN 192 (196)
Q Consensus 119 ~v~a~~v~~~~lti~Ns~g~------~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~G~g~ 192 (196)
.|.+++|+++||||+|+++. ..||+|+++.+|++.|++|+|.|+|||||.+.|||||+||+|||+||||||.|+
T Consensus 128 tV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~gR~yf~~C~IeG~VDFIFG~g~ 207 (343)
T PLN02480 128 TVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYKGRHYYHSCYIQGSIDFIFGRGR 207 (343)
T ss_pred EEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCCCCEEEEeCEEEeeeeEEcccee
Confidence 99999999999999999742 359999999999999999999999999999999999999999999999999999
Q ss_pred eeeC
Q 043115 193 SLFE 196 (196)
Q Consensus 193 a~fe 196 (196)
++||
T Consensus 208 a~fe 211 (343)
T PLN02480 208 SIFH 211 (343)
T ss_pred EEEE
Confidence 9997
No 10
>PLN02671 pectinesterase
Probab=100.00 E-value=5.1e-49 Score=347.21 Aligned_cols=160 Identities=47% Similarity=0.774 Sum_probs=147.3
Q ss_pred CCcEEEEEcCCCCCCcchHHHHHhhCCCCCCceEEEEEcCCeEeeeEEEcCCCCceEecCCC--CCCeEEEeCCCC----
Q 043115 37 SAAVLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTK--ASHTKITWSDGG---- 110 (196)
Q Consensus 37 ~~a~~i~V~~~g~g~y~tIq~AI~aa~~g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~--~~~v~I~~~~~~---- 110 (196)
....+++|+++|+|+|+|||+|||++|+++++|++|+|+||+|+|+|.||+.||+|+|+|++ ++.|+|++++..
T Consensus 56 ~~~~~i~Va~dGsGdf~TIQ~AIdavP~~~~~~~~I~Ik~GvY~EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~ 135 (359)
T PLN02671 56 NVSRVIVVDKNGGGDSLTVQGAVDMVPDYNSQRVKIYILPGIYREKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLD 135 (359)
T ss_pred CCceeEEECCCCCCCccCHHHHHHhchhcCCccEEEEEeCceEEEEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccc
Confidence 44567899999999999999999999998888999999999999999999999999999996 378999987643
Q ss_pred ------CCCCCeEEEEEcCcEEEEEEEEEecCC-----CCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCE
Q 043115 111 ------SILDSATFTVLASHFVARSLTIQNTYG-----SYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCI 179 (196)
Q Consensus 111 ------~~~~~~~l~v~a~~v~~~~lti~Ns~g-----~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~ 179 (196)
++..+++|.+.+++|+++||||+|+.. ..+||+||++.+|++.|++|+|.|+|||||.+.|||||++|+
T Consensus 136 ~~g~~~gT~~SaTv~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G~QDTLy~~~gR~yf~~Cy 215 (359)
T PLN02671 136 SNGFELGTYRTASVTIESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLGAQDTLLDETGSHYFYQCY 215 (359)
T ss_pred cCCccccceeeEEEEEECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEeccccccEeCCCcEEEEecE
Confidence 356789999999999999999999952 246999999999999999999999999999999999999999
Q ss_pred EEccceeEecCcceeeC
Q 043115 180 IEGATDFISGNANSLFE 196 (196)
Q Consensus 180 I~G~vDfI~G~g~a~fe 196 (196)
|+|+||||||+|+|+||
T Consensus 216 IeG~VDFIFG~g~A~Fe 232 (359)
T PLN02671 216 IQGSVDFIFGNAKSLYQ 232 (359)
T ss_pred EEEeccEEecceeEEEe
Confidence 99999999999999997
No 11
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=100.00 E-value=6.1e-49 Score=361.08 Aligned_cols=159 Identities=33% Similarity=0.531 Sum_probs=150.6
Q ss_pred CcEEEEEcCCCCCCcchHHHHHhhCCCCCCceEEEEEcCCeEeeeEEEcCCCCceEecCCCCCCeEEEeCCC----CCCC
Q 043115 38 AAVLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDG----GSIL 113 (196)
Q Consensus 38 ~a~~i~V~~~g~g~y~tIq~AI~aa~~g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~~~----~~~~ 113 (196)
...+++|+++|+|+|+|||+||+++|+++++|++|+|+||+|+|+|.||+.||+|+|+|++++.|+|+++.. .++.
T Consensus 216 ~~~~~~Va~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~ 295 (530)
T PLN02933 216 TNVNLSVAIDGTGNFTTINEAVSAAPNSSETRFIIYIKGGEYFENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTF 295 (530)
T ss_pred CcceEEECCCCCCCccCHHHHHHhchhcCCCcEEEEEcCceEEEEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccc
Confidence 346899999999999999999999999888899999999999999999999999999999999999999864 2477
Q ss_pred CCeEEEEEcCcEEEEEEEEEecCCC-CCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEccceeEecCcc
Q 043115 114 DSATFTVLASHFVARSLTIQNTYGS-YGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNAN 192 (196)
Q Consensus 114 ~~~~l~v~a~~v~~~~lti~Ns~g~-~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~G~g~ 192 (196)
.+++|.+.+++|+++||||+|++|. .+||+||++.+|++.|++|+|.|||||||++.|||||++|+|+|+||||||.|+
T Consensus 296 ~SaT~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~IeGtVDFIFG~a~ 375 (530)
T PLN02933 296 QTATVGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSAKQFYRECDIYGTIDFIFGNAA 375 (530)
T ss_pred cceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCCCceEEEeeEEecccceeccCce
Confidence 8999999999999999999999987 469999999999999999999999999999999999999999999999999999
Q ss_pred eeeC
Q 043115 193 SLFE 196 (196)
Q Consensus 193 a~fe 196 (196)
++||
T Consensus 376 avFq 379 (530)
T PLN02933 376 VVFQ 379 (530)
T ss_pred EEEe
Confidence 9997
No 12
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=100.00 E-value=6.9e-49 Score=357.57 Aligned_cols=157 Identities=33% Similarity=0.573 Sum_probs=149.5
Q ss_pred EEEEEcCCCCCCcchHHHHHhhCCCCCCceEEEEEcCCeEeeeEEEcCCCCceEecCCCCCCeEEEeCCCC----CCCCC
Q 043115 40 VLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDGG----SILDS 115 (196)
Q Consensus 40 ~~i~V~~~g~g~y~tIq~AI~aa~~g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~~~~----~~~~~ 115 (196)
..++|++||+|+|+|||+||+++|+++++|++|+|+||+|+|+|.|++.||+|+|+|++++.|+|+++... ++..+
T Consensus 197 ~~vvVa~dGsG~f~TIq~AI~a~P~~~~~r~vI~Ik~GvY~E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~S 276 (509)
T PLN02488 197 ADVVVAKDGSGKYNTVNAAIAAAPEHSRKRFVIYIKTGVYDEIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYT 276 (509)
T ss_pred ccEEECCCCCCCccCHHHHHHhchhcCCCcEEEEEeCCeeEEEEEecCCCccEEEEecCCCceEEEEcccccCCCCceee
Confidence 57899999999999999999999998889999999999999999999999999999999999999987542 46789
Q ss_pred eEEEEEcCcEEEEEEEEEecCCC-CCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEccceeEecCccee
Q 043115 116 ATFTVLASHFVARSLTIQNTYGS-YGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNANSL 194 (196)
Q Consensus 116 ~~l~v~a~~v~~~~lti~Ns~g~-~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~G~g~a~ 194 (196)
+||.+.+++|+++||||+|++|. .+||+||++.+|+..|++|+|.|||||||.+.+||||++|+|+|+||||||.|+++
T Consensus 277 ATv~v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~~RqyyrdC~I~GtVDFIFG~a~av 356 (509)
T PLN02488 277 ATVASNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHRDRQFYRECFITGTVDFICGNAAAV 356 (509)
T ss_pred EEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCCCCEEEEeeEEeeccceEecceEEE
Confidence 99999999999999999999987 57999999999999999999999999999999999999999999999999999999
Q ss_pred eC
Q 043115 195 FE 196 (196)
Q Consensus 195 fe 196 (196)
||
T Consensus 357 Fq 358 (509)
T PLN02488 357 FQ 358 (509)
T ss_pred EE
Confidence 96
No 13
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=100.00 E-value=8e-49 Score=360.21 Aligned_cols=159 Identities=35% Similarity=0.539 Sum_probs=150.3
Q ss_pred CcEEEEEcCCCCCCcchHHHHHhhCCCCCCceEEEEEcCCeEeeeEEEcCCCCceEecCCCCCCeEEEeCCCC----CCC
Q 043115 38 AAVLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDGG----SIL 113 (196)
Q Consensus 38 ~a~~i~V~~~g~g~y~tIq~AI~aa~~g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~~~~----~~~ 113 (196)
....++|+++|+|+|+|||+||+++|+++++|++|+|+||+|+|+|.||+.||+|+|+|++++.|+|+++... ++.
T Consensus 204 ~~~~~~Va~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~ 283 (520)
T PLN02201 204 VTPDVVVAADGTGNFTTIMDAVLAAPDYSTKRYVIYIKKGVYLENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTF 283 (520)
T ss_pred CCceEEEcCCCCCCccCHHHHHHhchhcCCCcEEEEEeCceeEEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCccc
Confidence 3457899999999999999999999998889999999999999999999999999999999999999988642 467
Q ss_pred CCeEEEEEcCcEEEEEEEEEecCCC-CCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEccceeEecCcc
Q 043115 114 DSATFTVLASHFVARSLTIQNTYGS-YGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNAN 192 (196)
Q Consensus 114 ~~~~l~v~a~~v~~~~lti~Ns~g~-~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~G~g~ 192 (196)
.+++|.|.+++|+++||||+|++|. .+||+|+++.+|++.|++|+|.|+|||||.+.|||||++|+|+|+||||||+|+
T Consensus 284 ~SAT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~ 363 (520)
T PLN02201 284 RSATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHTMRQFYRECRITGTVDFIFGDAT 363 (520)
T ss_pred ceEEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCCCCEEEEeeEEeecccEEecCce
Confidence 8999999999999999999999986 569999999999999999999999999999999999999999999999999999
Q ss_pred eeeC
Q 043115 193 SLFE 196 (196)
Q Consensus 193 a~fe 196 (196)
++||
T Consensus 364 avf~ 367 (520)
T PLN02201 364 AVFQ 367 (520)
T ss_pred EEEE
Confidence 9997
No 14
>PLN02916 pectinesterase family protein
Probab=100.00 E-value=1.2e-48 Score=356.98 Aligned_cols=160 Identities=34% Similarity=0.523 Sum_probs=149.2
Q ss_pred CCcEEEEEcCCCCCCcchHHHHHhhCCC---CCCceEEEEEcCCeEeeeEEEcCCCCceEecCCCCCCeEEEeCCCC---
Q 043115 37 SAAVLIRVEKYGRGDFRTIQGAIDSVPD---NNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDGG--- 110 (196)
Q Consensus 37 ~~a~~i~V~~~g~g~y~tIq~AI~aa~~---g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~~~~--- 110 (196)
+...+++|+++|+|+|+|||+||+++|+ ++++|++|+|+||+|+|+|.||+.||+|+|+|++++.|+|+++...
T Consensus 184 ~~~~~~vVa~dGsG~f~TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g 263 (502)
T PLN02916 184 TSRADFVVARDGSGTHRTINQALAALSRMGKSRTNRVIIYVKAGVYNEKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDG 263 (502)
T ss_pred CCcccEEECCCCCCCccCHHHHHHhcccccCCCCceEEEEEeCceeeEEEEecCCCceEEEEecCCCCcEEEeCCccCCC
Confidence 3456789999999999999999999995 4567999999999999999999999999999999999999997542
Q ss_pred -CCCCCeEEEEEcCcEEEEEEEEEecCCC-CCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEccceeEe
Q 043115 111 -SILDSATFTVLASHFVARSLTIQNTYGS-YGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFIS 188 (196)
Q Consensus 111 -~~~~~~~l~v~a~~v~~~~lti~Ns~g~-~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~ 188 (196)
++..+++|.|.+++|+++||||+|++|. .+||+||++.+|++.|++|+|.|+|||||.+.+||||++|+|+|+|||||
T Consensus 264 ~~T~~SAT~~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIF 343 (502)
T PLN02916 264 STTYSSATFGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHSLRQFYRDCHIYGTIDFIF 343 (502)
T ss_pred CcceeeEEEEEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCCCCEEEEecEEecccceec
Confidence 3678999999999999999999999986 56999999999999999999999999999999999999999999999999
Q ss_pred cCcceeeC
Q 043115 189 GNANSLFE 196 (196)
Q Consensus 189 G~g~a~fe 196 (196)
|+|+++||
T Consensus 344 G~a~avFq 351 (502)
T PLN02916 344 GDAAVVFQ 351 (502)
T ss_pred cCceEEEe
Confidence 99999997
No 15
>PLN02197 pectinesterase
Probab=100.00 E-value=2.5e-48 Score=361.10 Aligned_cols=157 Identities=33% Similarity=0.555 Sum_probs=149.3
Q ss_pred EEEEEcCCCCCCcchHHHHHhhCCCCCCceEEEEEcCCeEeeeEEEcCCCCceEecCCCCCCeEEEeCCCC------CCC
Q 043115 40 VLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDGG------SIL 113 (196)
Q Consensus 40 ~~i~V~~~g~g~y~tIq~AI~aa~~g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~~~~------~~~ 113 (196)
.+++|++||+|+|+|||+||+++|+++++|++|+|+||+|+|+|.|++.||+|+|+|++++.|+|+++... .+.
T Consensus 275 ~~~vVa~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~ 354 (588)
T PLN02197 275 ATHVVAKDGSGQFKTISQAVMACPDKNPGRCIIHIKAGIYNEQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTS 354 (588)
T ss_pred ccEEEcCCCCCCcCCHHHHHHhccccCCceEEEEEeCceEEEEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCccc
Confidence 57899999999999999999999999889999999999999999999999999999999999999997642 367
Q ss_pred CCeEEEEEcCcEEEEEEEEEecCCC-CCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEccceeEecCcc
Q 043115 114 DSATFTVLASHFVARSLTIQNTYGS-YGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNAN 192 (196)
Q Consensus 114 ~~~~l~v~a~~v~~~~lti~Ns~g~-~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~G~g~ 192 (196)
.++||.+.+++|+++||||+|++|. .+||+||++.+|++.||+|+|.|||||||.+.|||||++|+|+|+||||||.|+
T Consensus 355 ~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~ 434 (588)
T PLN02197 355 LSGTVQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFIFGKSA 434 (588)
T ss_pred ceeEEEEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecCCCEEEEeeEEEeccccccccee
Confidence 8999999999999999999999986 569999999999999999999999999999999999999999999999999999
Q ss_pred eeeC
Q 043115 193 SLFE 196 (196)
Q Consensus 193 a~fe 196 (196)
++||
T Consensus 435 avfq 438 (588)
T PLN02197 435 TVIQ 438 (588)
T ss_pred eeee
Confidence 9997
No 16
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=100.00 E-value=4.1e-48 Score=359.21 Aligned_cols=157 Identities=37% Similarity=0.642 Sum_probs=147.9
Q ss_pred EEEEEcCCCCCCcchHHHHHhhCCCC---CCceEEEEEcCCeEeeeEEEcCCCCceEecCCCCCCeEEEeCCC----CCC
Q 043115 40 VLIRVEKYGRGDFRTIQGAIDSVPDN---NSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDG----GSI 112 (196)
Q Consensus 40 ~~i~V~~~g~g~y~tIq~AI~aa~~g---~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~~~----~~~ 112 (196)
.+++|+++|+|+|+|||+||+++|++ ..+|++|+|+||+|+|+|.|++.||+|+|+|++++.|+|+++.. .++
T Consensus 250 ~~~~Va~dGsG~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T 329 (566)
T PLN02713 250 DIVTVNQNGTGNFTTINDAVAAAPNNTDGSNGYFVIYVTAGVYEEYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTT 329 (566)
T ss_pred ceEEECCCCCCCCCCHHHHHHhhhcccCCCCceEEEEEcCcEEEEEEEecCCCceEEEEecCCCCcEEEcCCcccCCCcc
Confidence 36899999999999999999999986 45799999999999999999999999999999999999998764 346
Q ss_pred CCCeEEEEEcCcEEEEEEEEEecCCC-CCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEccceeEecCc
Q 043115 113 LDSATFTVLASHFVARSLTIQNTYGS-YGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNA 191 (196)
Q Consensus 113 ~~~~~l~v~a~~v~~~~lti~Ns~g~-~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~G~g 191 (196)
..+++|.|.+++|+++||||+|++|. .+||+|+++.+|++.|++|+|.|||||||.+.+||||++|+|+|+||||||.|
T Consensus 330 ~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a 409 (566)
T PLN02713 330 FNSATFAVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNA 409 (566)
T ss_pred ccceeEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCCCEEEEeeEEecccceecccc
Confidence 78999999999999999999999986 56999999999999999999999999999999999999999999999999999
Q ss_pred ceeeC
Q 043115 192 NSLFE 196 (196)
Q Consensus 192 ~a~fe 196 (196)
+++||
T Consensus 410 ~avfq 414 (566)
T PLN02713 410 AVVFQ 414 (566)
T ss_pred eEEEe
Confidence 99997
No 17
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=100.00 E-value=3.8e-48 Score=357.78 Aligned_cols=158 Identities=39% Similarity=0.564 Sum_probs=148.3
Q ss_pred cEEEEEcCCCCCCcchHHHHHhhCCC--CCCceEEEEEcCCeEeeeEEEcCCCCceEecCCCCCCeEEEeCCCC----CC
Q 043115 39 AVLIRVEKYGRGDFRTIQGAIDSVPD--NNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDGG----SI 112 (196)
Q Consensus 39 a~~i~V~~~g~g~y~tIq~AI~aa~~--g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~~~~----~~ 112 (196)
..+++|+++|+|+|+|||+|||++|+ ++++|++|+|+||+|+|+|.||+.||+|+|+|++++.|+|+++... ++
T Consensus 222 ~~~~~Va~dGsG~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T 301 (539)
T PLN02995 222 RANLVVAKDGSGHFNTVQAAIDVAGRRKVTSGRFVIYVKRGIYQENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTT 301 (539)
T ss_pred CCcEEECCCCCCCccCHHHHHHhcccccCCCceEEEEEeCCEeEEEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcc
Confidence 34789999999999999999999995 3667999999999999999999999999999999999999997643 47
Q ss_pred CCCeEEEEEcCcEEEEEEEEEecCCC-CCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEccceeEecCc
Q 043115 113 LDSATFTVLASHFVARSLTIQNTYGS-YGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNA 191 (196)
Q Consensus 113 ~~~~~l~v~a~~v~~~~lti~Ns~g~-~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~G~g 191 (196)
..+++|.|.+++|+++||||+|++|. .+||+|+++.+|+..|++|+|.|+|||||.+.|||||++|+|+|+||||||+|
T Consensus 302 ~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a 381 (539)
T PLN02995 302 YNSATAGIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHSQRQFYRECYIYGTVDFIFGNA 381 (539)
T ss_pred cceEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCCCceEEEeeEEeeccceEeccc
Confidence 78999999999999999999999986 47999999999999999999999999999999999999999999999999999
Q ss_pred ceeeC
Q 043115 192 NSLFE 196 (196)
Q Consensus 192 ~a~fe 196 (196)
+++||
T Consensus 382 ~avf~ 386 (539)
T PLN02995 382 AAVFQ 386 (539)
T ss_pred ceEEe
Confidence 99997
No 18
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=100.00 E-value=4.3e-48 Score=359.45 Aligned_cols=158 Identities=35% Similarity=0.568 Sum_probs=149.7
Q ss_pred cEEEEEcCCCCCCcchHHHHHhhCCCCCCceEEEEEcCCeEeeeEEEcCCCCceEecCCCCCCeEEEeCCC-----CCCC
Q 043115 39 AVLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDG-----GSIL 113 (196)
Q Consensus 39 a~~i~V~~~g~g~y~tIq~AI~aa~~g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~~~-----~~~~ 113 (196)
...++|+++|+|+|+|||+||+++|+++++|++|+|+||+|+|+|.|++.||+|+|+|++++.|+|+++.+ .++.
T Consensus 258 ~~~~~Va~dGsG~f~TIq~Av~a~p~~~~~r~vI~Ik~GvY~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~ 337 (572)
T PLN02990 258 KANVVVAQDGSGQYKTINEALNAVPKANQKPFVIYIKQGVYNEKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTY 337 (572)
T ss_pred CceEEECCCCCCCCcCHHHHHhhCcccCCceEEEEEeCceeEEEEEecCCCCcEEEEecCCCceEEEeccccCCCCccce
Confidence 35789999999999999999999999988999999999999999999999999999999999999998643 2467
Q ss_pred CCeEEEEEcCcEEEEEEEEEecCCC-CCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEccceeEecCcc
Q 043115 114 DSATFTVLASHFVARSLTIQNTYGS-YGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNAN 192 (196)
Q Consensus 114 ~~~~l~v~a~~v~~~~lti~Ns~g~-~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~G~g~ 192 (196)
.+++|.|.+++|+++||||+|++|. .+||+||++.+|++.|++|+|.|||||||++.+||||++|+|+|+||||||.|+
T Consensus 338 ~saT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~ 417 (572)
T PLN02990 338 LTATVAINGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHSHRQFFRDCTVSGTVDFIFGDAK 417 (572)
T ss_pred eeeEEEEEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCCCcEEEEeeEEecccceEccCce
Confidence 8999999999999999999999986 479999999999999999999999999999999999999999999999999999
Q ss_pred eeeC
Q 043115 193 SLFE 196 (196)
Q Consensus 193 a~fe 196 (196)
++||
T Consensus 418 avf~ 421 (572)
T PLN02990 418 VVLQ 421 (572)
T ss_pred EEEE
Confidence 9996
No 19
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=100.00 E-value=4.6e-48 Score=354.56 Aligned_cols=158 Identities=29% Similarity=0.489 Sum_probs=147.9
Q ss_pred cEEEEEcCCCCCCcchHHHHHhhCC-CCCCceEEEEEcCCeEeeeEEEcCCCCceEecCCCCCCeEEEeCCC----CCCC
Q 043115 39 AVLIRVEKYGRGDFRTIQGAIDSVP-DNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDG----GSIL 113 (196)
Q Consensus 39 a~~i~V~~~g~g~y~tIq~AI~aa~-~g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~~~----~~~~ 113 (196)
..+++|+++|+|+|+|||+||+++| +++++|++|+|+||+|+|+|.|++.||+|+|+|++++.|+|+++.. .++.
T Consensus 224 ~~~~vVa~dGsG~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~ 303 (529)
T PLN02170 224 KVHAVVAADGSGTHKTIGEALLSTSLESGGGRTVIYLKAGTYHENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTY 303 (529)
T ss_pred cccEEEcCCCCCchhhHHHHHHhcccccCCceEEEEEeCCeeEEEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccc
Confidence 4578999999999999999999875 5667899999999999999999999999999999999999999764 2467
Q ss_pred CCeEEEEEcCcEEEEEEEEEecCCC-CCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEccceeEecCcc
Q 043115 114 DSATFTVLASHFVARSLTIQNTYGS-YGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNAN 192 (196)
Q Consensus 114 ~~~~l~v~a~~v~~~~lti~Ns~g~-~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~G~g~ 192 (196)
.+++|.+.+++|+++||||+|++|. .+||+|+++.+|++.|++|+|.|+|||||.+.|||||++|+|+|+||||||.|+
T Consensus 304 ~SaTv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~ 383 (529)
T PLN02170 304 QTATVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHSKRQFYRETDITGTVDFIFGNSA 383 (529)
T ss_pred cceEEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcceeCCCCEEEEeeEEccccceecccce
Confidence 8999999999999999999999986 469999999999999999999999999999999999999999999999999999
Q ss_pred eeeC
Q 043115 193 SLFE 196 (196)
Q Consensus 193 a~fe 196 (196)
++||
T Consensus 384 avFq 387 (529)
T PLN02170 384 VVFQ 387 (529)
T ss_pred EEEe
Confidence 9997
No 20
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=100.00 E-value=5.5e-48 Score=356.74 Aligned_cols=157 Identities=36% Similarity=0.535 Sum_probs=149.1
Q ss_pred EEEEEcCCCCCCcchHHHHHhhCCCCCCceEEEEEcCCeEeeeEEEcCCCCceEecCCCCCCeEEEeCCC----CCCCCC
Q 043115 40 VLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDG----GSILDS 115 (196)
Q Consensus 40 ~~i~V~~~g~g~y~tIq~AI~aa~~g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~~~----~~~~~~ 115 (196)
.+++|++||+|+|+|||+||+++|+++++|++|+|+||+|+|+|.|++.|++|+|+|++++.|+|+++.. .++..+
T Consensus 236 ~~~vVa~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~S 315 (548)
T PLN02301 236 ANVVVAKDGSGKYKTVKEAVASAPDNSKTRYVIYVKKGTYKENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRS 315 (548)
T ss_pred ccEEECCCCCCCcccHHHHHHhhhhcCCceEEEEEeCceeeEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceee
Confidence 5789999999999999999999999888999999999999999999999999999999999999998753 346789
Q ss_pred eEEEEEcCcEEEEEEEEEecCCC-CCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEccceeEecCccee
Q 043115 116 ATFTVLASHFVARSLTIQNTYGS-YGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNANSL 194 (196)
Q Consensus 116 ~~l~v~a~~v~~~~lti~Ns~g~-~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~G~g~a~ 194 (196)
++|.+.+++|+++||+|+|++|. .+||+|+++.+|++.|++|+|.|||||||.+.+||||+||+|+|+||||||.|+++
T Consensus 316 aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~av 395 (548)
T PLN02301 316 ATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHSLRQFYRDSYITGTVDFIFGNAAVV 395 (548)
T ss_pred EEEEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecCCcEEEEeeEEEeccceecccceeE
Confidence 99999999999999999999986 56999999999999999999999999999999999999999999999999999999
Q ss_pred eC
Q 043115 195 FE 196 (196)
Q Consensus 195 fe 196 (196)
||
T Consensus 396 fq 397 (548)
T PLN02301 396 FQ 397 (548)
T ss_pred Ee
Confidence 97
No 21
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=100.00 E-value=6.1e-48 Score=361.86 Aligned_cols=159 Identities=30% Similarity=0.574 Sum_probs=150.5
Q ss_pred CcEEEEEcCCCCCCcchHHHHHhhCCCCCCceEEEEEcCCeEeeeEEEcCCCCceEecCCCCCCeEEEeCCC----CCCC
Q 043115 38 AAVLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDG----GSIL 113 (196)
Q Consensus 38 ~a~~i~V~~~g~g~y~tIq~AI~aa~~g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~~~----~~~~ 113 (196)
...+++|++||.|+|+|||+||+++|+++++|++|+|+||+|+|+|.|++.|++|+|+|++++.|+|+|+.. .++.
T Consensus 248 ~~~~~vVa~dGsG~f~TIq~Av~a~P~~~~~r~vI~Ik~GvY~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~ 327 (670)
T PLN02217 248 VKPDIVVAQDGSGQYKTINEALNFVPKKKNTTFVVHIKAGIYKEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTY 327 (670)
T ss_pred CCccEEECCCCCCCccCHHHHHHhccccCCceEEEEEeCCceEEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCcc
Confidence 346789999999999999999999999988999999999999999999999999999999999999998754 2477
Q ss_pred CCeEEEEEcCcEEEEEEEEEecCCC-CCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEccceeEecCcc
Q 043115 114 DSATFTVLASHFVARSLTIQNTYGS-YGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNAN 192 (196)
Q Consensus 114 ~~~~l~v~a~~v~~~~lti~Ns~g~-~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~G~g~ 192 (196)
++++|.|.+++|+++||||+|++|. .+||+||++.+|+..||+|+|.|||||||.+.+||||++|+|+|+||||||.|+
T Consensus 328 ~SAT~~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~ 407 (670)
T PLN02217 328 KTATVAIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLFGDAA 407 (670)
T ss_pred ceEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEecCce
Confidence 8999999999999999999999986 569999999999999999999999999999999999999999999999999999
Q ss_pred eeeC
Q 043115 193 SLFE 196 (196)
Q Consensus 193 a~fe 196 (196)
++||
T Consensus 408 avfq 411 (670)
T PLN02217 408 AVFQ 411 (670)
T ss_pred EEEE
Confidence 9996
No 22
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=100.00 E-value=9.5e-48 Score=354.75 Aligned_cols=159 Identities=35% Similarity=0.551 Sum_probs=150.4
Q ss_pred CcEEEEEcCCCCCCcchHHHHHhhCCCCCCceEEEEEcCCeEeeeEEEcCCCCceEecCCCCCCeEEEeCCC----CCCC
Q 043115 38 AAVLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDG----GSIL 113 (196)
Q Consensus 38 ~a~~i~V~~~g~g~y~tIq~AI~aa~~g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~~~----~~~~ 113 (196)
....++|+++|+|+|+|||+||+++|+++++|++|+|+||+|+|+|.|++.|++|+|+|++.+.|+|+++.. .++.
T Consensus 230 ~~~~~~Va~dGsG~f~TIq~Av~a~p~~~~~r~vI~Vk~GvY~E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~ 309 (537)
T PLN02506 230 MHVDTIVALDGSGHYRTITEAINEAPNHSNRRYIIYVKKGVYKENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTF 309 (537)
T ss_pred CCceEEECCCCCCCccCHHHHHHhchhcCCCcEEEEEeCCeeeEEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcc
Confidence 455889999999999999999999999888999999999999999999999999999999999999999854 2467
Q ss_pred CCeEEEEEcCcEEEEEEEEEecCCC-CCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEccceeEecCcc
Q 043115 114 DSATFTVLASHFVARSLTIQNTYGS-YGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNAN 192 (196)
Q Consensus 114 ~~~~l~v~a~~v~~~~lti~Ns~g~-~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~G~g~ 192 (196)
.+++|.|.+++|+++||+|+|++|. .+||+|+++.+|++.|++|+|.|+|||||.+.|||||++|+|+|+||||||+|+
T Consensus 310 ~saT~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~~rqyy~~C~I~GtVDFIFG~a~ 389 (537)
T PLN02506 310 RTATVAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHSLRQFYRECEIYGTIDFIFGNGA 389 (537)
T ss_pred cceEEEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecCCceEEEeeEEecccceEccCce
Confidence 8999999999999999999999986 469999999999999999999999999999999999999999999999999999
Q ss_pred eeeC
Q 043115 193 SLFE 196 (196)
Q Consensus 193 a~fe 196 (196)
++||
T Consensus 390 avfq 393 (537)
T PLN02506 390 AVLQ 393 (537)
T ss_pred eEEe
Confidence 9997
No 23
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=100.00 E-value=2.5e-47 Score=341.52 Aligned_cols=157 Identities=31% Similarity=0.399 Sum_probs=139.9
Q ss_pred EEEEE--cCCCCCCcchHHHHHhhCC-CCCCceEEEEEcCCeEeeeEEEcCCCCceEecCCC--CCCeEEEeCC------
Q 043115 40 VLIRV--EKYGRGDFRTIQGAIDSVP-DNNSELVFISVAPGIYREKIIVPANKPFITISGTK--ASHTKITWSD------ 108 (196)
Q Consensus 40 ~~i~V--~~~g~g~y~tIq~AI~aa~-~g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~--~~~v~I~~~~------ 108 (196)
..++| +++|+|+|+|||+|||+++ .++++|++|+|+||+|+|+|.||++||+|||+|++ ++.|+|+++.
T Consensus 80 ~~~vV~~a~dGsGdf~TIQaAIdAa~~~~~~~r~~I~Ik~GvY~EkV~Ip~~kp~ItL~G~G~~~~~TvIt~~~~~~~~~ 159 (422)
T PRK10531 80 PDFVVGPAGTQGVTHTTVQAAVDAAIAKRTNKRQYIAVMPGTYQGTVYVPAAAPPITLYGTGEKPIDVKIGLALDGEMSP 159 (422)
T ss_pred CcEEEecCCCCCCCccCHHHHHhhccccCCCceEEEEEeCceeEEEEEeCCCCceEEEEecCCCCCceEEEecCcccccc
Confidence 56789 6788889999999999876 45667999999999999999999999999999976 5689999872
Q ss_pred ------------------------------C--CCCCCCeEEEEEcCcEEEEEEEEEecCCC-----CCcEEEEEEeCCc
Q 043115 109 ------------------------------G--GSILDSATFTVLASHFVARSLTIQNTYGS-----YGKAVALRVSADR 151 (196)
Q Consensus 109 ------------------------------~--~~~~~~~~l~v~a~~v~~~~lti~Ns~g~-----~~~a~al~v~~d~ 151 (196)
+ .++..+++|.|.+++|+++||||+|+++. .+||+||++++|+
T Consensus 160 ~~~~~~~~~~g~~~~~~p~~y~~d~~~~~~~~~~gT~~SATv~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDr 239 (422)
T PRK10531 160 ADWRANVNPRGKYMPGKPAWYMYDSCQSKRAATIGTLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDK 239 (422)
T ss_pred ccccccccccccccccccccccccccccccCCCcCceeeEEEEEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCc
Confidence 0 12557899999999999999999999863 3699999999999
Q ss_pred EEEEccEEeecceEEEe------------cCCceeEEcCEEEccceeEecCcceeeC
Q 043115 152 AAFYGCRILSYQHTLLD------------DTGNHYYSKCIIEGATDFISGNANSLFE 196 (196)
Q Consensus 152 ~~~~~c~~~g~QDTl~~------------~~gr~~f~~c~I~G~vDfI~G~g~a~fe 196 (196)
+.|++|+|.|+|||||. +.||+||++|+|||+||||||+|++|||
T Consensus 240 a~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG~VDFIFG~g~AvFe 296 (422)
T PRK10531 240 VQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIEGDVDFVFGRGAVVFD 296 (422)
T ss_pred EEEEeeEEecccceeeeccccccccccccccccEEEEeCEEeecccEEccCceEEEE
Confidence 99999999999999997 3469999999999999999999999997
No 24
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=100.00 E-value=7.3e-48 Score=356.98 Aligned_cols=157 Identities=36% Similarity=0.532 Sum_probs=148.2
Q ss_pred EEEEEcCCCCCCcchHHHHHhhCCCC-CCceEEEEEcCCeEeeeEEEcCCCCceEecCCCCCCeEEEeCCCC-----CCC
Q 043115 40 VLIRVEKYGRGDFRTIQGAIDSVPDN-NSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDGG-----SIL 113 (196)
Q Consensus 40 ~~i~V~~~g~g~y~tIq~AI~aa~~g-~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~~~~-----~~~ 113 (196)
.+++|++||+|+|+|||+||+++|++ .++|++|+|+||+|+|+|.|++.|++|+|+|++++.|+|+++... +++
T Consensus 241 ~~~~Va~dGsg~f~TIq~Av~a~p~~~~~~r~vI~vk~GvY~E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~ 320 (553)
T PLN02708 241 PDVTVCKDGNCCYKTVQEAVNAAPDNNGDRKFVIRIKEGVYEETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTY 320 (553)
T ss_pred ccEEECCCCCCCccCHHHHHHhhhhccCCccEEEEEeCceEEeeeeecCCCccEEEEecCCCceEEEecCccCCCCcCcc
Confidence 57899999999999999999999994 478999999999999999999999999999999999999987643 367
Q ss_pred CCeEEEEEcCcEEEEEEEEEecCCCC-CcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEccceeEecCcc
Q 043115 114 DSATFTVLASHFVARSLTIQNTYGSY-GKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNAN 192 (196)
Q Consensus 114 ~~~~l~v~a~~v~~~~lti~Ns~g~~-~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~G~g~ 192 (196)
.++||.+.+++|+++||||+|++|.. +||+|+++.+|++.|++|+|.|+|||||.+.+|+||++|+|+|+||||||.|+
T Consensus 321 ~saT~~v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtVDFIFG~a~ 400 (553)
T PLN02708 321 NTATVGVLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIQGNVDFIFGNSA 400 (553)
T ss_pred ceEEEEEEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCCCceEEEeeEEeecCCEEecCce
Confidence 89999999999999999999999874 69999999999999999999999999999999999999999999999999999
Q ss_pred eeeC
Q 043115 193 SLFE 196 (196)
Q Consensus 193 a~fe 196 (196)
++||
T Consensus 401 avfq 404 (553)
T PLN02708 401 AVFQ 404 (553)
T ss_pred EEEE
Confidence 9997
No 25
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=100.00 E-value=9.9e-48 Score=357.92 Aligned_cols=159 Identities=35% Similarity=0.546 Sum_probs=150.0
Q ss_pred CcEEEEEcCCCCCCcchHHHHHhhCCCCCCceEEEEEcCCeEee-eEEEcCCCCceEecCCCCCCeEEEeCCC----CCC
Q 043115 38 AAVLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYRE-KIIVPANKPFITISGTKASHTKITWSDG----GSI 112 (196)
Q Consensus 38 ~a~~i~V~~~g~g~y~tIq~AI~aa~~g~~~~~~I~I~~G~Y~E-~v~I~~~k~~ItL~G~~~~~v~I~~~~~----~~~ 112 (196)
...+++|+++|+|+|+|||+||+++|+++++|++|+|+||+|+| +|.|++.||+|+|+|++++.|+|+++.. .++
T Consensus 270 ~~~~~vVa~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t 349 (587)
T PLN02484 270 IQADIIVSKDGNGTFKTISEAIKKAPEHSSRRTIIYVKAGRYEENNLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTT 349 (587)
T ss_pred CCceEEECCCCCCCcccHHHHHHhccccCCCcEEEEEeCCEEEEEEEEECCCCceEEEEecCCCCeEEecCCcccCCCcc
Confidence 34578999999999999999999999998899999999999999 5999999999999999999999999754 247
Q ss_pred CCCeEEEEEcCcEEEEEEEEEecCCC-CCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEccceeEecCc
Q 043115 113 LDSATFTVLASHFVARSLTIQNTYGS-YGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNA 191 (196)
Q Consensus 113 ~~~~~l~v~a~~v~~~~lti~Ns~g~-~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~G~g 191 (196)
..+++|.|.+++|+++||||+|++|. .+||+|+++.+|+..|++|+|.|||||||.+.|||||++|+|+|+||||||.|
T Consensus 350 ~~saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a 429 (587)
T PLN02484 350 FHTASFAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNA 429 (587)
T ss_pred cceEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCCCcEEEEecEEEeccceecccc
Confidence 78999999999999999999999986 46999999999999999999999999999999999999999999999999999
Q ss_pred ceeeC
Q 043115 192 NSLFE 196 (196)
Q Consensus 192 ~a~fe 196 (196)
+++||
T Consensus 430 ~avfq 434 (587)
T PLN02484 430 AVVLQ 434 (587)
T ss_pred eeEEe
Confidence 99997
No 26
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=100.00 E-value=3.2e-48 Score=336.77 Aligned_cols=155 Identities=51% Similarity=0.826 Sum_probs=125.5
Q ss_pred EEEcCCCCCCcchHHHHHhhCCCCCCceEEEEEcCCeEeeeEEEcCCCCceEecCCCCCCeEEEeCCC----CCCCCCeE
Q 043115 42 IRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDG----GSILDSAT 117 (196)
Q Consensus 42 i~V~~~g~g~y~tIq~AI~aa~~g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~~~----~~~~~~~~ 117 (196)
++|+++|.|+|+|||+|||++|++++.|++|+|+||+|+|+|.|++.||+|+|+|++++.++|++... .++..+++
T Consensus 2 i~Va~dG~gdf~TIq~Aida~p~~~~~~~~I~I~~G~Y~E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT 81 (298)
T PF01095_consen 2 IVVAQDGSGDFTTIQAAIDAAPDNNTSRYTIFIKPGTYREKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSAT 81 (298)
T ss_dssp EEE-TTSTSSBSSHHHHHHHS-SSSSS-EEEEE-SEEEE--EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-S
T ss_pred eEECCCCCCCccCHHHHHHhchhcCCceEEEEEeCeeEccccEeccccceEEEEecCCCceEEEEecccccccccccccc
Confidence 78999999999999999999999888899999999999999999998999999999999999998532 24678999
Q ss_pred EEEEcCcEEEEEEEEEecCCC-CCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEccceeEecCcceeeC
Q 043115 118 FTVLASHFVARSLTIQNTYGS-YGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNANSLFE 196 (196)
Q Consensus 118 l~v~a~~v~~~~lti~Ns~g~-~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~G~g~a~fe 196 (196)
|.+.+++|+++||||+|++|. .+||+||++.+|+..|++|+|.|+|||||.+.||+||+||+|+|+||||||+|.+|||
T Consensus 82 ~~v~a~~f~~~nit~~Nt~g~~~~qAvAl~~~~d~~~f~~c~~~g~QDTL~~~~~r~y~~~c~IeG~vDFIfG~~~a~f~ 161 (298)
T PF01095_consen 82 FSVNADDFTAENITFENTAGPSGGQAVALRVSGDRAAFYNCRFLGYQDTLYANGGRQYFKNCYIEGNVDFIFGNGTAVFE 161 (298)
T ss_dssp EEE-STT-EEEEEEEEEHCSGSG----SEEET-TSEEEEEEEEE-STT-EEE-SSEEEEES-EEEESEEEEEESSEEEEE
T ss_pred ccccccceeeeeeEEecCCCCcccceeeeeecCCcEEEEEeEEccccceeeeccceeEEEeeEEEecCcEEECCeeEEee
Confidence 999999999999999999876 4699999999999999999999999999999999999999999999999999999996
No 27
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=100.00 E-value=7.5e-48 Score=355.94 Aligned_cols=157 Identities=38% Similarity=0.584 Sum_probs=148.7
Q ss_pred EEEEEcCCCCCCcchHHHHHhhCCCCCCceEEEEEcCCeEeeeEEEcCCCCceEecCCCCCCeEEEeCCC----CCCCCC
Q 043115 40 VLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDG----GSILDS 115 (196)
Q Consensus 40 ~~i~V~~~g~g~y~tIq~AI~aa~~g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~~~----~~~~~~ 115 (196)
..++|++||+|+|+|||+||+++|.++++|++|+|+||+|+|+|.|++.||+|+|+|++++.|+|+++.. .++..+
T Consensus 230 ~~ivVa~dGsG~f~TIq~Ai~a~p~~~~~r~vI~Ik~GvY~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~s 309 (541)
T PLN02416 230 EVLVVAADGTGNFSTITDAINFAPNNSNDRIIIYVREGVYEENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRS 309 (541)
T ss_pred ceEEECCCCCCCccCHHHHHHhhhhcCCceEEEEEeCceeEEEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccce
Confidence 4588999999999999999999999888999999999999999999999999999999999999999754 246788
Q ss_pred eEEEEEcCcEEEEEEEEEecCCC-CCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEccceeEecCccee
Q 043115 116 ATFTVLASHFVARSLTIQNTYGS-YGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNANSL 194 (196)
Q Consensus 116 ~~l~v~a~~v~~~~lti~Ns~g~-~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~G~g~a~ 194 (196)
++|.|.+++|+++||+|+|++|. .+||+||++.+|++.|++|+|.|+|||||.+.+||||++|+|+|+||||||+|+++
T Consensus 310 aT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~av 389 (541)
T PLN02416 310 ATLAVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHSFRQFYRECDIYGTIDYIFGNAAVV 389 (541)
T ss_pred EEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCCCceEEEeeEEeeccceeeccceEE
Confidence 99999999999999999999987 46999999999999999999999999999999999999999999999999999999
Q ss_pred eC
Q 043115 195 FE 196 (196)
Q Consensus 195 fe 196 (196)
||
T Consensus 390 fq 391 (541)
T PLN02416 390 FQ 391 (541)
T ss_pred Ee
Confidence 97
No 28
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=100.00 E-value=1.3e-47 Score=357.38 Aligned_cols=157 Identities=35% Similarity=0.577 Sum_probs=149.3
Q ss_pred EEEEEcCCCCCCcchHHHHHhhCCCCCCceEEEEEcCCeEeeeEEEcCCCCceEecCCCCCCeEEEeCCC----CCCCCC
Q 043115 40 VLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDG----GSILDS 115 (196)
Q Consensus 40 ~~i~V~~~g~g~y~tIq~AI~aa~~g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~~~----~~~~~~ 115 (196)
.+++|+++|+|+|+|||+||+++|+++++|++|+|+||+|+|+|.|++.||+|+|+|++++.|+|+++.. .+++.+
T Consensus 285 ~~~~Va~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~s 364 (596)
T PLN02745 285 PNATVAKDGSGNFTTISDALAAMPAKYEGRYVIYVKQGIYDETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRT 364 (596)
T ss_pred ceEEECCCCCCCcccHHHHHHhccccCCceEEEEEeCCeeEEEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceee
Confidence 5789999999999999999999999988999999999999999999999999999999999999998753 346789
Q ss_pred eEEEEEcCcEEEEEEEEEecCCC-CCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEccceeEecCccee
Q 043115 116 ATFTVLASHFVARSLTIQNTYGS-YGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNANSL 194 (196)
Q Consensus 116 ~~l~v~a~~v~~~~lti~Ns~g~-~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~G~g~a~ 194 (196)
++|.|.+++|+++||||+|++|. .+||+||++.+|++.|++|+|.|+|||||.+.|||||++|+|+|+||||||.|+++
T Consensus 365 aT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~av 444 (596)
T PLN02745 365 ATFVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQTHRQFYRSCVITGTIDFIFGDAAAI 444 (596)
T ss_pred EEEEEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCCCcEEEEeeEEEeeccEEecceeEE
Confidence 99999999999999999999986 56999999999999999999999999999999999999999999999999999999
Q ss_pred eC
Q 043115 195 FE 196 (196)
Q Consensus 195 fe 196 (196)
||
T Consensus 445 f~ 446 (596)
T PLN02745 445 FQ 446 (596)
T ss_pred EE
Confidence 97
No 29
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=100.00 E-value=2.4e-47 Score=352.63 Aligned_cols=157 Identities=38% Similarity=0.581 Sum_probs=147.8
Q ss_pred EEEEEcCCCCCCcchHHHHHhhCCCCCC---ceEEEEEcCCeEeeeEEEcCCCCceEecCCCCCCeEEEeCCC----CCC
Q 043115 40 VLIRVEKYGRGDFRTIQGAIDSVPDNNS---ELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDG----GSI 112 (196)
Q Consensus 40 ~~i~V~~~g~g~y~tIq~AI~aa~~g~~---~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~~~----~~~ 112 (196)
.+++|+++|+|+|+|||+||+++|.+.+ .|++|+|++|+|+|+|.|++.|++|+|+|++++.|+|+++.. ..+
T Consensus 223 ~~~vVa~dGsG~f~TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T 302 (538)
T PLN03043 223 DAVIVGPYGTDNFTTITDAIAAAPNNSKPEDGYFVIYAREGYYEEYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTT 302 (538)
T ss_pred ccEEECCCCCCCCcCHHHHHHhccccCCCCcceEEEEEcCeeeEEEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCcc
Confidence 5789999999999999999999998753 589999999999999999999999999999999999998754 346
Q ss_pred CCCeEEEEEcCcEEEEEEEEEecCCC-CCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEccceeEecCc
Q 043115 113 LDSATFTVLASHFVARSLTIQNTYGS-YGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNA 191 (196)
Q Consensus 113 ~~~~~l~v~a~~v~~~~lti~Ns~g~-~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~G~g 191 (196)
..+++|.|.+++|+++||+|+|++|. .+||+||++.+|+..|++|+|.|||||||.+.+||||++|+|+|+||||||+|
T Consensus 303 ~~saT~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~rq~y~~c~I~GtVDFIFG~a 382 (538)
T PLN03043 303 FNSSTFAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNA 382 (538)
T ss_pred ccceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCCCcEEEEeeEEeeccceEeecc
Confidence 78999999999999999999999986 56999999999999999999999999999999999999999999999999999
Q ss_pred ceeeC
Q 043115 192 NSLFE 196 (196)
Q Consensus 192 ~a~fe 196 (196)
+++||
T Consensus 383 ~avfq 387 (538)
T PLN03043 383 AAIFQ 387 (538)
T ss_pred eeeee
Confidence 99997
No 30
>PLN02314 pectinesterase
Probab=100.00 E-value=3.1e-47 Score=354.98 Aligned_cols=159 Identities=32% Similarity=0.525 Sum_probs=149.8
Q ss_pred CcEEEEEcCCCCCCcchHHHHHhhCCCCCCceEEEEEcCCeEeeeEEEcCCCCceEecCCCCCCeEEEeCCC----CCCC
Q 043115 38 AAVLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDG----GSIL 113 (196)
Q Consensus 38 ~a~~i~V~~~g~g~y~tIq~AI~aa~~g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~~~----~~~~ 113 (196)
....++|++||+|+|+|||+||+++|+++++|++|+|+||+|+|+|.|++.|++|+|+|++++.|+|+++.. ..+.
T Consensus 276 ~~~~~~Va~dGsg~f~TI~~Av~a~p~~~~~r~vI~ik~G~Y~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~ 355 (586)
T PLN02314 276 PTPNVTVAKDGSGDVKTINEAVASIPKKSKSRFVIYVKEGTYVENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTF 355 (586)
T ss_pred CCccEEECCCCCCCccCHHHHHhhccccCCceEEEEEcCceEEEEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCcc
Confidence 345689999999999999999999999988999999999999999999999999999999999999998653 2467
Q ss_pred CCeEEEEEcCcEEEEEEEEEecCCC-CCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEccceeEecCcc
Q 043115 114 DSATFTVLASHFVARSLTIQNTYGS-YGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNAN 192 (196)
Q Consensus 114 ~~~~l~v~a~~v~~~~lti~Ns~g~-~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~G~g~ 192 (196)
.++||.+.+++|+++||||+|++|. .+||+|+++.+|+..|++|+|.|||||||.+.+||||++|+|+|+||||||.|+
T Consensus 356 ~saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIFG~a~ 435 (586)
T PLN02314 356 STATFAAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSNRQFYRDCDITGTIDFIFGNAA 435 (586)
T ss_pred ceEEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCCCCEEEEeeEEEeccceeccCce
Confidence 8999999999999999999999987 469999999999999999999999999999999999999999999999999999
Q ss_pred eeeC
Q 043115 193 SLFE 196 (196)
Q Consensus 193 a~fe 196 (196)
++||
T Consensus 436 avf~ 439 (586)
T PLN02314 436 VVFQ 439 (586)
T ss_pred eeee
Confidence 9996
No 31
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=100.00 E-value=4.1e-47 Score=352.75 Aligned_cols=157 Identities=34% Similarity=0.547 Sum_probs=148.9
Q ss_pred EEEEEcCCCCCCcchHHHHHhhCCCCCCceEEEEEcCCeEeeeEEEcCCCCceEecCCCCCCeEEEeCCC----CCCCCC
Q 043115 40 VLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDG----GSILDS 115 (196)
Q Consensus 40 ~~i~V~~~g~g~y~tIq~AI~aa~~g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~~~----~~~~~~ 115 (196)
..++|+++|.|+|+|||+||+++|+++++|++|+|+||+|+|+|.|++.|++|+|+|++++.++|+++.. ..++.+
T Consensus 258 ~~~~Va~dGsg~f~tI~~Av~a~p~~~~~~~vI~ik~GvY~E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~s 337 (565)
T PLN02468 258 ADIVVAKDGSGKYKTISEALKDVPEKSEKRTIIYVKKGVYFENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFST 337 (565)
T ss_pred CcEEECCCCCCCccCHHHHHHhchhcCCCcEEEEEeCCceEEEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccce
Confidence 5789999999999999999999999888999999999999999999999999999999999999998753 246789
Q ss_pred eEEEEEcCcEEEEEEEEEecCCC-CCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEccceeEecCccee
Q 043115 116 ATFTVLASHFVARSLTIQNTYGS-YGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNANSL 194 (196)
Q Consensus 116 ~~l~v~a~~v~~~~lti~Ns~g~-~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~G~g~a~ 194 (196)
+||.|.+++|+++||+|+|++|. .+||+||++.+|++.|++|+|.|||||||.+.+||||++|+|+|+||||||.|+++
T Consensus 338 aT~~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIFG~a~av 417 (565)
T PLN02468 338 ATFAVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHAQRQFYRECNIYGTVDFIFGNSAVV 417 (565)
T ss_pred eeeeEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCCCceEEEeeEEecccceeeccceEE
Confidence 99999999999999999999987 46999999999999999999999999999999999999999999999999999999
Q ss_pred eC
Q 043115 195 FE 196 (196)
Q Consensus 195 fe 196 (196)
||
T Consensus 418 fq 419 (565)
T PLN02468 418 FQ 419 (565)
T ss_pred Ee
Confidence 97
No 32
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=100.00 E-value=7e-47 Score=352.47 Aligned_cols=158 Identities=36% Similarity=0.600 Sum_probs=149.4
Q ss_pred cEEEEEcCCCCCCcchHHHHHhhCCCCCCceEEEEEcCCeEeeeEEEcCCCCceEecCCCCCCeEEEeCCC----CCCCC
Q 043115 39 AVLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDG----GSILD 114 (196)
Q Consensus 39 a~~i~V~~~g~g~y~tIq~AI~aa~~g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~~~----~~~~~ 114 (196)
...++|++||+|+|+|||+||+++|+++++|++|+|+||+|+|+|.|++.|++|+|+|++.+.|+|+++.. ..+..
T Consensus 274 ~~~~vVa~dGsG~f~TI~~Av~a~p~~~~~r~vI~ik~GvY~E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~ 353 (587)
T PLN02313 274 KADATVAADGSGDFTTVAAAVAAAPEKSNKRFVIHIKAGVYRENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFH 353 (587)
T ss_pred CCCEEECCCCCCCCccHHHHHHhccccCCceEEEEEeCceeEEEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCcee
Confidence 34689999999999999999999999888999999999999999999999999999999999999998754 24678
Q ss_pred CeEEEEEcCcEEEEEEEEEecCCC-CCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEccceeEecCcce
Q 043115 115 SATFTVLASHFVARSLTIQNTYGS-YGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNANS 193 (196)
Q Consensus 115 ~~~l~v~a~~v~~~~lti~Ns~g~-~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~G~g~a 193 (196)
+++|.+.+++|+++||+|+|++|. .+||+||++.+|+..|++|+|.|||||||.+.+||||++|+|+|+||||||.|++
T Consensus 354 sat~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I~GtvDFIFG~a~a 433 (587)
T PLN02313 354 SATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIFGNAAA 433 (587)
T ss_pred eEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCCCcEEEEeeEEeeccceeccceeE
Confidence 899999999999999999999987 5699999999999999999999999999999999999999999999999999999
Q ss_pred eeC
Q 043115 194 LFE 196 (196)
Q Consensus 194 ~fe 196 (196)
+||
T Consensus 434 vfq 436 (587)
T PLN02313 434 VLQ 436 (587)
T ss_pred EEE
Confidence 996
No 33
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.6e-38 Score=270.75 Aligned_cols=147 Identities=35% Similarity=0.515 Sum_probs=131.4
Q ss_pred CCcchHHHHHhhCCCCCC-ceEEEEEcCCeEeeeEEEcCCCCceEecCCCCC--CeEEEeCCCC----------------
Q 043115 50 GDFRTIQGAIDSVPDNNS-ELVFISVAPGIYREKIIVPANKPFITISGTKAS--HTKITWSDGG---------------- 110 (196)
Q Consensus 50 g~y~tIq~AI~aa~~g~~-~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~--~v~I~~~~~~---------------- 110 (196)
.+|+|||+|||+|+...+ +|..|.||||+|+|.|.|++..+.|||+|++.+ .|+|..+..+
T Consensus 92 ~~f~TIQaAvdaA~~~~~~kr~yI~vk~GvY~e~v~Vp~~~~~ITLyGed~~~~~tvIg~n~aagp~np~~~m~n~c~ss 171 (405)
T COG4677 92 VTFTTIQAAVDAAIIKRTNKRQYIAVKAGVYQETVYVPAAPGGITLYGEDEKPIDTVIGLNLAAGPGNPAGYMYNSCQSS 171 (405)
T ss_pred cchHHHHHHHhhhcccCCCceEEEEEccceeceeEEecCCCCceeEEecCCCCcceEEEEecCCCCCCccceeecccccc
Confidence 599999999999886654 799999999999999999987667999999877 7888765322
Q ss_pred -----CCCCCeEEEEEcCcEEEEEEEEEecCCC-----CCcEEEEEEeCCcEEEEccEEeecceEEEecCC---------
Q 043115 111 -----SILDSATFTVLASHFVARSLTIQNTYGS-----YGKAVALRVSADRAAFYGCRILSYQHTLLDDTG--------- 171 (196)
Q Consensus 111 -----~~~~~~~l~v~a~~v~~~~lti~Ns~g~-----~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~g--------- 171 (196)
++..++++++.+++|.++||||+|+.|+ .++|+||..+|||+.|++|++.|+|||||.+.+
T Consensus 172 ~~~tigt~~Sat~~v~~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~QdTlFv~~~~~~~~~~tn 251 (405)
T COG4677 172 RSATIGTLCSATFWVQNNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQDTLFVGNSGVQNRLETN 251 (405)
T ss_pred hhhhhhhhhhhhheeecCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeeccceEEecCCCCccccccC
Confidence 1456889999999999999999999976 358999999999999999999999999999877
Q ss_pred ---ceeEEcCEEEccceeEecCcceeeC
Q 043115 172 ---NHYYSKCIIEGATDFISGNANSLFE 196 (196)
Q Consensus 172 ---r~~f~~c~I~G~vDfI~G~g~a~fe 196 (196)
|.||+||+|+|+||||||+|+++|+
T Consensus 252 ~~~R~yftNsyI~GdvDfIfGsgtaVFd 279 (405)
T COG4677 252 RQPRTYFTNSYIEGDVDFIFGSGTAVFD 279 (405)
T ss_pred cchhhheecceecccceEEeccceEEec
Confidence 8999999999999999999999996
No 34
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=100.00 E-value=9e-36 Score=273.50 Aligned_cols=127 Identities=35% Similarity=0.572 Sum_probs=115.0
Q ss_pred cEEEEEcCCCCCCcchHHHHHhhCCCCCCceEEEEEcCCeEeeeEEEcCCCCceEecCCCCCCeEEEeCCC----CCCCC
Q 043115 39 AVLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDG----GSILD 114 (196)
Q Consensus 39 a~~i~V~~~g~g~y~tIq~AI~aa~~g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~~~----~~~~~ 114 (196)
...++|+++|+|+|+|||+|||++|+++ |++.|+|+|+.. .+++.
T Consensus 213 ~~~~~Va~dGsG~f~tiq~Ai~a~p~~~-------------------------------g~~~TiIt~~~~~~~g~~t~~ 261 (497)
T PLN02698 213 KANAVVAKDGTGNYETVSEAITAAHGNH-------------------------------GKYSTVIVGDDSVTGGTSVPD 261 (497)
T ss_pred CceEEEcCCCCCCcccHHHHHHhhhhcC-------------------------------CCCceEEEeCCcccCCCcccc
Confidence 4578999999999999999999999864 334677777653 24678
Q ss_pred CeEEEEEcCcEEEEEEEEEecCCC-CCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEccceeEecCcce
Q 043115 115 SATFTVLASHFVARSLTIQNTYGS-YGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNANS 193 (196)
Q Consensus 115 ~~~l~v~a~~v~~~~lti~Ns~g~-~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~G~g~a 193 (196)
++||.|.+++|+++||||+|++|. .+||+|+++.+|++.|++|+|.|||||||++.+||||++|+|+|+||||||+|++
T Consensus 262 SaT~~v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~~rqyy~~C~I~G~vDFIFG~a~a 341 (497)
T PLN02698 262 TATFTITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAALRQFYRECDIYGTIDFIFGNAAA 341 (497)
T ss_pred ceeEEEECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCCCcEEEEeeEEEeccceEecccce
Confidence 999999999999999999999986 4599999999999999999999999999999999999999999999999999999
Q ss_pred eeC
Q 043115 194 LFE 196 (196)
Q Consensus 194 ~fe 196 (196)
+||
T Consensus 342 vf~ 344 (497)
T PLN02698 342 VFQ 344 (497)
T ss_pred eec
Confidence 997
No 35
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.64 E-value=4.9e-15 Score=129.90 Aligned_cols=118 Identities=18% Similarity=0.247 Sum_probs=91.1
Q ss_pred HHHHHhhCCCCCCceEEEEEcCCeEe--eeEEEcCCCCceEecCCCCCCeEEEeCCCCCCCCCeEEEEEcCcEEEEEEEE
Q 043115 55 IQGAIDSVPDNNSELVFISVAPGIYR--EKIIVPANKPFITISGTKASHTKITWSDGGSILDSATFTVLASHFVARSLTI 132 (196)
Q Consensus 55 Iq~AI~aa~~g~~~~~~I~I~~G~Y~--E~v~I~~~k~~ItL~G~~~~~v~I~~~~~~~~~~~~~l~v~a~~v~~~~lti 132 (196)
||+||++|++|+ +|.|+||+|+ |+|.|+ |++|||+|++++.++|++.... .....+.+.+++++++||++
T Consensus 1 iQ~Ai~~A~~GD----tI~l~~G~Y~~~~~l~I~--~~~Iti~G~g~~~tvid~~~~~--~~~~~i~v~a~~VtI~~ltI 72 (314)
T TIGR03805 1 LQEALIAAQPGD----TIVLPEGVFQFDRTLSLD--ADGVTIRGAGMDETILDFSGQV--GGAEGLLVTSDDVTLSDLAV 72 (314)
T ss_pred CHhHHhhCCCCC----EEEECCCEEEcceeEEEe--CCCeEEEecCCCccEEecccCC--CCCceEEEEeCCeEEEeeEE
Confidence 799999999999 9999999999 899995 4469999999888999986531 23577899999999999999
Q ss_pred EecCCCCCcEEEEEE-eCCcEEEEccEEee--------cceEEEecCC-ceeEEcCEEEccce
Q 043115 133 QNTYGSYGKAVALRV-SADRAAFYGCRILS--------YQHTLLDDTG-NHYYSKCIIEGATD 185 (196)
Q Consensus 133 ~Ns~g~~~~a~al~v-~~d~~~~~~c~~~g--------~QDTl~~~~g-r~~f~~c~I~G~vD 185 (196)
+|+.+. ++.+ .++++.+++|++.+ ..+.+|.... ...+++|+|.|+-|
T Consensus 73 ~~~~~~-----GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d 130 (314)
T TIGR03805 73 ENTKGD-----GVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASD 130 (314)
T ss_pred EcCCCC-----eEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCc
Confidence 988642 3444 45677777777762 2345665543 34777777777766
No 36
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.30 E-value=3.8e-11 Score=108.90 Aligned_cols=118 Identities=19% Similarity=0.183 Sum_probs=88.3
Q ss_pred chHHHHHhhCCCCCCceEEEEEcCCeEe-eeEEEcCCCCceEecCCCCCCe--EEEeCCCCCCCCCeEEEEEcCcEEEEE
Q 043115 53 RTIQGAIDSVPDNNSELVFISVAPGIYR-EKIIVPANKPFITISGTKASHT--KITWSDGGSILDSATFTVLASHFVARS 129 (196)
Q Consensus 53 ~tIq~AI~aa~~g~~~~~~I~I~~G~Y~-E~v~I~~~k~~ItL~G~~~~~v--~I~~~~~~~~~~~~~l~v~a~~v~~~~ 129 (196)
+.||+||++|.+++. +|.|.||+|+ +++.|+ + +++|.|++ ..+ +|++. .+.++.+.+++++++|
T Consensus 55 ~ALQaAIdaAa~gG~---tV~Lp~G~Y~~G~L~L~--s-pltL~G~~-gAt~~vIdG~------~~lIiai~A~nVTIsG 121 (455)
T TIGR03808 55 RALQRAIDEAARAQT---PLALPPGVYRTGPLRLP--S-GAQLIGVR-GATRLVFTGG------PSLLSSEGADGIGLSG 121 (455)
T ss_pred HHHHHHHHHhhcCCC---EEEECCCceecccEEEC--C-CcEEEecC-CcEEEEEcCC------ceEEEEecCCCeEEEe
Confidence 469999998874431 8999999996 999995 4 49999995 233 35443 2355689999999999
Q ss_pred EEEEecCCC-CCcEEEEEE-eCCcEEEEccEEeec-ceEEEecCCceeEEcCEEEcc
Q 043115 130 LTIQNTYGS-YGKAVALRV-SADRAAFYGCRILSY-QHTLLDDTGNHYYSKCIIEGA 183 (196)
Q Consensus 130 lti~Ns~g~-~~~a~al~v-~~d~~~~~~c~~~g~-QDTl~~~~gr~~f~~c~I~G~ 183 (196)
|+|.|+..+ ..+..+|++ .++++.+++|+|.+. -..+|.+..+....++.|.|+
T Consensus 122 LtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~g~ 178 (455)
T TIGR03808 122 LTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNTITQI 178 (455)
T ss_pred eEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecceEecc
Confidence 999998755 234445666 589999999999999 599998876644444444444
No 37
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=99.18 E-value=6.4e-10 Score=94.54 Aligned_cols=127 Identities=22% Similarity=0.332 Sum_probs=89.5
Q ss_pred CCCcchHHHHHhhCCCCCCceEEEEEcCCeEeee------EEEcCCCCceEecCCCCC----CeEEEeCCC------CCC
Q 043115 49 RGDFRTIQGAIDSVPDNNSELVFISVAPGIYREK------IIVPANKPFITISGTKAS----HTKITWSDG------GSI 112 (196)
Q Consensus 49 ~g~y~tIq~AI~aa~~g~~~~~~I~I~~G~Y~E~------v~I~~~k~~ItL~G~~~~----~v~I~~~~~------~~~ 112 (196)
...|+||++|+++|++++ +|+|.||+|+|. +.| |+.++|+|+... .+++.+... .+.
T Consensus 12 ~~P~~Ti~~A~~~a~~g~----~i~l~~GtY~~~~ge~fPi~i---~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~ 84 (246)
T PF07602_consen 12 SAPFKTITKALQAAQPGD----TIQLAPGTYSEATGETFPIII---KPGVTLIGNESNKGQIDILITGGGTGPTISGGGP 84 (246)
T ss_pred ccCHHHHHHHHHhCCCCC----EEEECCceeccccCCcccEEe---cCCeEEeecccCCCcceEEecCCceEEeEeccCc
Confidence 367999999999999999 999999999986 566 446999997432 122322110 000
Q ss_pred --CCCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeec-ceEEEec-CC-ceeEEcCEEEccc
Q 043115 113 --LDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSY-QHTLLDD-TG-NHYYSKCIIEGAT 184 (196)
Q Consensus 113 --~~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~-QDTl~~~-~g-r~~f~~c~I~G~v 184 (196)
....+..+.+++.++++++|+|... ....++++.+....++||.|.+. ++.++.. .. ..-+.+..|+|+.
T Consensus 85 ~~~~qn~tI~~~~~~~i~GvtItN~n~--~~g~Gi~Iess~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~ 159 (246)
T PF07602_consen 85 DLSGQNVTIILANNATISGVTITNPNI--ARGTGIWIESSSPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNS 159 (246)
T ss_pred cccceeEEEEecCCCEEEEEEEEcCCC--CcceEEEEecCCcEEEeeEEECCccccEEEEeeecCCcccceEeecce
Confidence 1112223457899999999999832 46778899888999999999975 7787653 22 3456677777775
No 38
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=99.11 E-value=4.2e-10 Score=101.79 Aligned_cols=119 Identities=23% Similarity=0.344 Sum_probs=74.0
Q ss_pred chHHHHHhhCCCCCCceEEEEEcCCeEee-eEEEc----CCCCceEecCCCCCCeEEEeCCCCCCCCCeEEEEEcCcEEE
Q 043115 53 RTIQGAIDSVPDNNSELVFISVAPGIYRE-KIIVP----ANKPFITISGTKASHTKITWSDGGSILDSATFTVLASHFVA 127 (196)
Q Consensus 53 ~tIq~AI~aa~~g~~~~~~I~I~~G~Y~E-~v~I~----~~k~~ItL~G~~~~~v~I~~~~~~~~~~~~~l~v~a~~v~~ 127 (196)
..||+||++|.||| +|.|++|+|++ .+.+. +.+ ||||..+.+.+|+|++. ..|.+.++++++
T Consensus 5 ~~lq~Ai~~a~pGD----~I~L~~Gty~~~~i~~~~~GT~~~-PItl~Ae~~G~vvi~G~--------s~l~i~G~yl~v 71 (425)
T PF14592_consen 5 AELQSAIDNAKPGD----TIVLADGTYKDVEIVFKGSGTAAK-PITLRAENPGKVVITGE--------SNLRISGSYLVV 71 (425)
T ss_dssp HHHHHHHHH--TT-----EEEE-SEEEET-EEEE-S--BTTB--EEEEESSTTSEEEEES---------EEEE-SSSEEE
T ss_pred HHHHHHHHhCCCCC----EEEECCceeecceEEEEecccCCC-CEEEEecCCCeEEEecc--------eeEEEEeeeEEE
Confidence 67999999999999 99999999996 56664 334 49999999999999997 458999999999
Q ss_pred EEEEEEecCCCCCcEEEE-----EEeCCcEEEEccEEeecc------eEEEe----cCCc-eeEEcCEEEccc
Q 043115 128 RSLTIQNTYGSYGKAVAL-----RVSADRAAFYGCRILSYQ------HTLLD----DTGN-HYYSKCIIEGAT 184 (196)
Q Consensus 128 ~~lti~Ns~g~~~~a~al-----~v~~d~~~~~~c~~~g~Q------DTl~~----~~gr-~~f~~c~I~G~v 184 (196)
+||.|+|........+.. ...++++.+.+|.|..+. +..|+ -.|+ +.+.+|+++|..
T Consensus 72 ~GL~F~ng~~~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~ 144 (425)
T PF14592_consen 72 SGLKFKNGYTPTGAVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYFQGKT 144 (425)
T ss_dssp ES-EEEEE---TTT--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EEE---
T ss_pred eCeEEecCCCCCCceEEeecCCCcceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEeeccc
Confidence 999999875433222222 246789999999999752 34555 2454 489999998764
No 39
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=98.82 E-value=6.2e-08 Score=85.17 Aligned_cols=110 Identities=15% Similarity=0.244 Sum_probs=91.4
Q ss_pred CCCCCCceEEEEEcCCeEeeeEEEcCCCCceEecCCCCCCeEEEeCCCCCCCCCeEEEEEcCcEEEEEEEEEecCCC-CC
Q 043115 62 VPDNNSELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWSDGGSILDSATFTVLASHFVARSLTIQNTYGS-YG 140 (196)
Q Consensus 62 a~~g~~~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~~~~~~~~~~~l~v~a~~v~~~~lti~Ns~g~-~~ 140 (196)
|.+++ .+.|. |+|.|+++|+ ++ |||.|+. ..++.+.. ++.++++.+.++++++++++++... ..
T Consensus 31 a~pgd----~~~i~-g~~~g~~vIn--r~-l~l~ge~--ga~l~g~g-----~G~~vtv~aP~~~v~Gl~vr~sg~~lp~ 95 (408)
T COG3420 31 AKPGD----YYGIS-GRYAGNFVIN--RA-LTLRGEN--GAVLDGGG-----KGSYVTVAAPDVIVEGLTVRGSGRSLPA 95 (408)
T ss_pred cCCCc----EEEEe-eeecccEEEc--cc-eeecccc--ccEEecCC-----cccEEEEeCCCceeeeEEEecCCCCccc
Confidence 78888 78888 9999999995 54 9999997 67777664 3578999999999999999999755 45
Q ss_pred cEEEEEE--eCCcEEEEccEEeecceEEEecC-CceeEEcCEEEcccee
Q 043115 141 KAVALRV--SADRAAFYGCRILSYQHTLLDDT-GNHYYSKCIIEGATDF 186 (196)
Q Consensus 141 ~a~al~v--~~d~~~~~~c~~~g~QDTl~~~~-gr~~f~~c~I~G~vDf 186 (196)
+..++.+ .+....+++|.+.+.-..+|.++ .+...+.++|+|.-|.
T Consensus 96 m~agI~v~~~at~A~Vr~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~~ 144 (408)
T COG3420 96 MDAGIFVGRTATGAVVRHNDLIGNSFGIYLHGSADVRIEGNTIQGLADL 144 (408)
T ss_pred ccceEEeccCcccceEEcccccccceEEEEeccCceEEEeeEEeecccc
Confidence 6677777 47899999999999999999864 5668888999987774
No 40
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=98.28 E-value=4.5e-05 Score=61.94 Aligned_cols=110 Identities=22% Similarity=0.300 Sum_probs=68.3
Q ss_pred chHHHHHh-hCCCCCCceEEEEEcCCeEe--eeEEEcCCCCceEecCCCCCCeEEEeCCCCCCCC--CeEEEEEc--Cc-
Q 043115 53 RTIQGAID-SVPDNNSELVFISVAPGIYR--EKIIVPANKPFITISGTKASHTKITWSDGGSILD--SATFTVLA--SH- 124 (196)
Q Consensus 53 ~tIq~AI~-aa~~g~~~~~~I~I~~G~Y~--E~v~I~~~k~~ItL~G~~~~~v~I~~~~~~~~~~--~~~l~v~a--~~- 124 (196)
.-||+||+ ++..+. -+|+++||+|+ ..+.++ ++++|+|++...+++.......... .......+ .+
T Consensus 19 ~Aiq~Ai~~~~~~~g---~~v~~P~G~Y~i~~~l~~~---s~v~l~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (225)
T PF12708_consen 19 AAIQAAIDAAAAAGG---GVVYFPPGTYRISGTLIIP---SNVTLRGAGGNSTILFLSGSGDSFSVVPGIGVFDSGNSNI 92 (225)
T ss_dssp HHHHHHHHHHCSTTS---EEEEE-SEEEEESS-EEE----TTEEEEESSTTTEEEEECTTTSTSCCEEEEEECCSCSCCE
T ss_pred HHHHHhhhhcccCCC---eEEEEcCcEEEEeCCeEcC---CCeEEEccCCCeeEEEecCcccccccccceeeeecCCCCc
Confidence 57999993 333322 39999999999 348874 4799999998888887543321111 11122222 23
Q ss_pred -EEEEEEEEEecCCCCC-cEEEEEEe-CCcEEEEccEEeec-ceEEEe
Q 043115 125 -FVARSLTIQNTYGSYG-KAVALRVS-ADRAAFYGCRILSY-QHTLLD 168 (196)
Q Consensus 125 -v~~~~lti~Ns~g~~~-~a~al~v~-~d~~~~~~c~~~g~-QDTl~~ 168 (196)
..++||+|.+...... ...++... +..+.+++|++... .+.++.
T Consensus 93 ~~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~ 140 (225)
T PF12708_consen 93 GIQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENSGGDGIYF 140 (225)
T ss_dssp EEEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-SS-SEEE
T ss_pred eEEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEccCccEEEE
Confidence 4499999997753322 25677775 57899999999854 455554
No 41
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=98.06 E-value=0.00014 Score=66.23 Aligned_cols=70 Identities=13% Similarity=0.053 Sum_probs=44.5
Q ss_pred EcCcEEEEEEEEEecCCC----------------------CCcEEEEEEe-CCcEEEEccEEeecceEEEecCCc--eeE
Q 043115 121 LASHFVARSLTIQNTYGS----------------------YGKAVALRVS-ADRAAFYGCRILSYQHTLLDDTGN--HYY 175 (196)
Q Consensus 121 ~a~~v~~~~lti~Ns~g~----------------------~~~a~al~v~-~d~~~~~~c~~~g~QDTl~~~~gr--~~f 175 (196)
..+++.++|||++|+..- ....-++.+. ++++.+++|.|...-|.+-.+.|. -.+
T Consensus 162 ~~~nv~i~gitl~nSp~w~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I 241 (404)
T PLN02188 162 NMNNTVVRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTI 241 (404)
T ss_pred eeeeEEEeCeEEEcCCCeEEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEE
Confidence 457788888888887521 0112234553 467888888888888888776554 366
Q ss_pred EcCEEEccceeEecC
Q 043115 176 SKCIIEGATDFISGN 190 (196)
Q Consensus 176 ~~c~I~G~vDfI~G~ 190 (196)
+||...+.--+-+|+
T Consensus 242 ~n~~c~~ghGisiGS 256 (404)
T PLN02188 242 TRIRCGPGHGISVGS 256 (404)
T ss_pred EEEEEcCCCcEEeCC
Confidence 776665444455554
No 42
>PLN03010 polygalacturonase
Probab=97.74 E-value=0.0019 Score=58.88 Aligned_cols=120 Identities=13% Similarity=0.156 Sum_probs=63.6
Q ss_pred chHHHHHhhCCCCCCceEEEEEcCC-eEe-eeEEEcC-C-CCceEec--CC----------------------CCCCeEE
Q 043115 53 RTIQGAIDSVPDNNSELVFISVAPG-IYR-EKIIVPA-N-KPFITIS--GT----------------------KASHTKI 104 (196)
Q Consensus 53 ~tIq~AI~aa~~g~~~~~~I~I~~G-~Y~-E~v~I~~-~-k~~ItL~--G~----------------------~~~~v~I 104 (196)
..||+|++++-.+....-+|+|+|| +|. .+|.+.. - ..+|+|. |. +.+.+.|
T Consensus 64 ~A~~~Ai~~ac~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~G~l~~~~d~~~w~~~~~~~wi~f~~v~nv~I 143 (409)
T PLN03010 64 NAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLDGIIVAPSNIVAWSNPKSQMWISFSTVSGLMI 143 (409)
T ss_pred HHHHHHHHHHccCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEccEEEccCChhhccCCCCcceEEEecccccEE
Confidence 3599999864332111238999999 686 4555531 0 0123221 11 1123344
Q ss_pred EeCC----CCCCCCCeEEEEEcCcEEEEEEEEEecCCC-------C---------------CcEEEEEEe-CCcEEEEcc
Q 043115 105 TWSD----GGSILDSATFTVLASHFVARSLTIQNTYGS-------Y---------------GKAVALRVS-ADRAAFYGC 157 (196)
Q Consensus 105 ~~~~----~~~~~~~~~l~v~a~~v~~~~lti~Ns~g~-------~---------------~~a~al~v~-~d~~~~~~c 157 (196)
+|.. .+..++.........++.++||+++|+..- . ...-++.+. ++++.+++|
T Consensus 144 ~G~G~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~ 223 (409)
T PLN03010 144 DGSGTIDGRGSSFWEALHISKCDNLTINGITSIDSPKNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDS 223 (409)
T ss_pred eeceEEeCCCccccceEEEEeecCeEEeeeEEEcCCceEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEee
Confidence 4431 011233333334567888888888877421 0 112234442 467888888
Q ss_pred EEeecceEEEecCCc
Q 043115 158 RILSYQHTLLDDTGN 172 (196)
Q Consensus 158 ~~~g~QDTl~~~~gr 172 (196)
.|...-|.+..+.|.
T Consensus 224 ~I~~gDDcIaiksgs 238 (409)
T PLN03010 224 TIQTGDDCIAINSGS 238 (409)
T ss_pred EEecCCCeEEecCCC
Confidence 888778888776653
No 43
>PLN02793 Probable polygalacturonase
Probab=97.45 E-value=0.0053 Score=56.59 Aligned_cols=61 Identities=3% Similarity=-0.046 Sum_probs=38.2
Q ss_pred EcCcEEEEEEEEEecCCC----------------------CCcEEEEEEe-CCcEEEEccEEeecceEEEecCC--ceeE
Q 043115 121 LASHFVARSLTIQNTYGS----------------------YGKAVALRVS-ADRAAFYGCRILSYQHTLLDDTG--NHYY 175 (196)
Q Consensus 121 ~a~~v~~~~lti~Ns~g~----------------------~~~a~al~v~-~d~~~~~~c~~~g~QDTl~~~~g--r~~f 175 (196)
..++++++||+++|+..- ....-++.+. .+++.++||.|...-|.+..+.+ +-.+
T Consensus 184 ~~~nv~v~gitl~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I 263 (443)
T PLN02793 184 KCKDLRVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKI 263 (443)
T ss_pred eeccEEEECeEEEcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEE
Confidence 468888888888888520 0112234553 46788888888888888877533 2356
Q ss_pred EcCEEE
Q 043115 176 SKCIIE 181 (196)
Q Consensus 176 ~~c~I~ 181 (196)
+||+..
T Consensus 264 ~n~~c~ 269 (443)
T PLN02793 264 RNIACG 269 (443)
T ss_pred EEeEEe
Confidence 666553
No 44
>PLN02155 polygalacturonase
Probab=97.10 E-value=0.023 Score=51.64 Aligned_cols=61 Identities=13% Similarity=0.110 Sum_probs=38.0
Q ss_pred EcCcEEEEEEEEEecCCC----------------------CCcEEEEEE-eCCcEEEEccEEeecceEEEecCCc--eeE
Q 043115 121 LASHFVARSLTIQNTYGS----------------------YGKAVALRV-SADRAAFYGCRILSYQHTLLDDTGN--HYY 175 (196)
Q Consensus 121 ~a~~v~~~~lti~Ns~g~----------------------~~~a~al~v-~~d~~~~~~c~~~g~QDTl~~~~gr--~~f 175 (196)
...++.++||+++|+..- ....-++.+ ..+++.+++|.|...-|.+-.+.|. -.+
T Consensus 152 ~~~nv~i~gitl~nSp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I 231 (394)
T PLN02155 152 SAKDVIISGVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLI 231 (394)
T ss_pred EeeeEEEECeEEEcCCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEE
Confidence 456777888888777420 001123445 3567888888888888888777663 255
Q ss_pred EcCEEE
Q 043115 176 SKCIIE 181 (196)
Q Consensus 176 ~~c~I~ 181 (196)
++|+..
T Consensus 232 ~n~~c~ 237 (394)
T PLN02155 232 TKLACG 237 (394)
T ss_pred EEEEEE
Confidence 555443
No 45
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=96.94 E-value=0.067 Score=47.09 Aligned_cols=126 Identities=16% Similarity=0.124 Sum_probs=71.7
Q ss_pred hHHHHHhhCCCCCCceEEEEEcCCeEeee------EEEcCCCCceEecCCCCCCeEEEeCCCCCCCCCeEEEEE-cCcEE
Q 043115 54 TIQGAIDSVPDNNSELVFISVAPGIYREK------IIVPANKPFITISGTKASHTKITWSDGGSILDSATFTVL-ASHFV 126 (196)
Q Consensus 54 tIq~AI~aa~~g~~~~~~I~I~~G~Y~E~------v~I~~~k~~ItL~G~~~~~v~I~~~~~~~~~~~~~l~v~-a~~v~ 126 (196)
|..+-...+......+ .|.+-.|+-.-. +.|.. -.+.||.|.+.+.+++-+. |.+. ++|+.
T Consensus 61 ta~~l~~~~sa~~~~t-~ii~v~Gti~~s~ps~~k~~iki-~sNkTivG~g~~a~~~g~g----------l~i~~a~NVI 128 (345)
T COG3866 61 TANDLETYLSASGKYT-VIIVVKGTITASTPSDKKITIKI-GSNKTIVGSGADATLVGGG----------LKIRDAGNVI 128 (345)
T ss_pred eHHHHHHHhhccCceE-EEEEEcceEeccCCCCceEEEee-ccccEEEeeccccEEEece----------EEEEeCCcEE
Confidence 3333334444333333 344555654422 33321 2356777777656555443 6666 99999
Q ss_pred EEEEEEEecCCCCC--cEEEEEEeCCcEEEEccEEee--------cceEEEe-cCCc--eeEEcCEEE-ccceeEecCc
Q 043115 127 ARSLTIQNTYGSYG--KAVALRVSADRAAFYGCRILS--------YQHTLLD-DTGN--HYYSKCIIE-GATDFISGNA 191 (196)
Q Consensus 127 ~~~lti~Ns~g~~~--~a~al~v~~d~~~~~~c~~~g--------~QDTl~~-~~gr--~~f~~c~I~-G~vDfI~G~g 191 (196)
++||+|+...-... .++-|.-++.++.+.+|.|.+ ..|.++. .++. -.+..|+.. +.--.|||..
T Consensus 129 irNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~s 207 (345)
T COG3866 129 IRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSS 207 (345)
T ss_pred EEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccC
Confidence 99999998761112 344444467899999999998 5677764 2222 234444444 4444455543
No 46
>smart00656 Amb_all Amb_all domain.
Probab=96.93 E-value=0.012 Score=48.16 Aligned_cols=98 Identities=18% Similarity=0.221 Sum_probs=63.4
Q ss_pred eeEEEcCCCCceEecCCCCCCeEEEeCCCCCCCCCeEEEEE-cCcEEEEEEEEEecCCCC-CcEEEEEE-eCCcEEEEcc
Q 043115 81 EKIIVPANKPFITISGTKASHTKITWSDGGSILDSATFTVL-ASHFVARSLTIQNTYGSY-GKAVALRV-SADRAAFYGC 157 (196)
Q Consensus 81 E~v~I~~~k~~ItL~G~~~~~v~I~~~~~~~~~~~~~l~v~-a~~v~~~~lti~Ns~g~~-~~a~al~v-~~d~~~~~~c 157 (196)
.+|.| +++.||.|++... .|.+. -|.+. ++||.++||+|++..... ...-++.+ .++++.+..|
T Consensus 10 ~~i~v---~snkTI~G~~~~~-~i~g~---------gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHc 76 (190)
T smart00656 10 GTIII---NSNKTIDGRGSKV-EIKGG---------GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHV 76 (190)
T ss_pred ceEEe---CCCCEEEecCCCc-EEEee---------EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEcc
Confidence 45777 3578999997544 44442 25554 789999999999764321 12234455 4789999999
Q ss_pred EEeec---------ceEEEe-c--CCceeEEcCEEE-ccceeEecCc
Q 043115 158 RILSY---------QHTLLD-D--TGNHYYSKCIIE-GATDFISGNA 191 (196)
Q Consensus 158 ~~~g~---------QDTl~~-~--~gr~~f~~c~I~-G~vDfI~G~g 191 (196)
+|... .|.+.. . .....+.+|++. ...=.++|.+
T Consensus 77 t~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~ 123 (190)
T smart00656 77 SLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHS 123 (190)
T ss_pred EeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccC
Confidence 99976 677753 2 234477777775 2233455554
No 47
>PLN02671 pectinesterase
Probab=96.90 E-value=0.017 Score=51.97 Aligned_cols=61 Identities=13% Similarity=0.311 Sum_probs=49.8
Q ss_pred CCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEE
Q 043115 114 DSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIE 181 (196)
Q Consensus 114 ~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~ 181 (196)
.+..|.+.+|...++|..|...- . .|+.+..+..|++|.|+|.=|-+| +.|..+|++|.|.
T Consensus 177 QAVALrv~gDra~f~~c~f~G~Q-----D-TLy~~~gR~yf~~CyIeG~VDFIF-G~g~A~Fe~C~I~ 237 (359)
T PLN02671 177 QAVALRISGDKAFFYKVRVLGAQ-----D-TLLDETGSHYFYQCYIQGSVDFIF-GNAKSLYQDCVIQ 237 (359)
T ss_pred cEEEEEEcCccEEEEcceEeccc-----c-ccEeCCCcEEEEecEEEEeccEEe-cceeEEEeccEEE
Confidence 46678889999999999999332 1 245567789999999999999998 4788999999997
No 48
>PLN03003 Probable polygalacturonase At3g15720
Probab=96.67 E-value=0.049 Score=50.49 Aligned_cols=61 Identities=11% Similarity=0.066 Sum_probs=40.5
Q ss_pred EcCcEEEEEEEEEecCCC----------------------CCcEEEEEEe-CCcEEEEccEEeecceEEEecCCc--eeE
Q 043115 121 LASHFVARSLTIQNTYGS----------------------YGKAVALRVS-ADRAAFYGCRILSYQHTLLDDTGN--HYY 175 (196)
Q Consensus 121 ~a~~v~~~~lti~Ns~g~----------------------~~~a~al~v~-~d~~~~~~c~~~g~QDTl~~~~gr--~~f 175 (196)
..+++.++||+++|+..- ....-++.+. .+++.++||.|...-|.+-.+.|. -.+
T Consensus 145 ~~~nv~I~gitl~NSp~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I 224 (456)
T PLN03003 145 SCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHI 224 (456)
T ss_pred ecCCcEEeCeEEecCCcEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEE
Confidence 456777777777777420 0112345663 478999999999999999887764 266
Q ss_pred EcCEEE
Q 043115 176 SKCIIE 181 (196)
Q Consensus 176 ~~c~I~ 181 (196)
+||+..
T Consensus 225 ~n~~c~ 230 (456)
T PLN03003 225 SGIDCG 230 (456)
T ss_pred EeeEEE
Confidence 666543
No 49
>PLN02218 polygalacturonase ADPG
Probab=96.58 E-value=0.059 Score=49.58 Aligned_cols=61 Identities=7% Similarity=0.085 Sum_probs=42.2
Q ss_pred EcCcEEEEEEEEEecCCC----------------------CCcEEEEEEe-CCcEEEEccEEeecceEEEecCCc--eeE
Q 043115 121 LASHFVARSLTIQNTYGS----------------------YGKAVALRVS-ADRAAFYGCRILSYQHTLLDDTGN--HYY 175 (196)
Q Consensus 121 ~a~~v~~~~lti~Ns~g~----------------------~~~a~al~v~-~d~~~~~~c~~~g~QDTl~~~~gr--~~f 175 (196)
..++++++||+++|+..- ....-++.+. .+++.+++|.|...-|.+-.+.|. -.+
T Consensus 199 ~~~nv~I~gitl~nSp~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I 278 (431)
T PLN02218 199 NSKSLIVKNLRVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQI 278 (431)
T ss_pred ccccEEEeCeEEEcCCCEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEE
Confidence 467888888888887520 0012345563 467999999999888999887765 377
Q ss_pred EcCEEE
Q 043115 176 SKCIIE 181 (196)
Q Consensus 176 ~~c~I~ 181 (196)
+||+..
T Consensus 279 ~n~~c~ 284 (431)
T PLN02218 279 NDITCG 284 (431)
T ss_pred EeEEEE
Confidence 777774
No 50
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=96.27 E-value=0.36 Score=43.78 Aligned_cols=119 Identities=17% Similarity=0.229 Sum_probs=73.4
Q ss_pred chHHHHHhhCCCCCCceEEEEEcCCe-Ee--eeEEEcCCCCceEecCCCCCCeEEEeCCCCCCCCCeEEEEE--------
Q 043115 53 RTIQGAIDSVPDNNSELVFISVAPGI-YR--EKIIVPANKPFITISGTKASHTKITWSDGGSILDSATFTVL-------- 121 (196)
Q Consensus 53 ~tIq~AI~aa~~g~~~~~~I~I~~G~-Y~--E~v~I~~~k~~ItL~G~~~~~v~I~~~~~~~~~~~~~l~v~-------- 121 (196)
..+++||+.- . +|.+.||. |+ -+|.|+ + ...|+|.|+ .+.|..+++. + |.+.
T Consensus 55 eDle~~I~~h---a----KVaL~Pg~~Y~i~~~V~I~--~-~cYIiGnGA-~V~v~~~~~~-----~-f~v~~~~~~P~V 117 (386)
T PF01696_consen 55 EDLEEAIRQH---A----KVALRPGAVYVIRKPVNIR--S-CCYIIGNGA-TVRVNGPDRV-----A-FRVCMQSMGPGV 117 (386)
T ss_pred cCHHHHHHhc---C----EEEeCCCCEEEEeeeEEec--c-eEEEECCCE-EEEEeCCCCc-----e-EEEEcCCCCCeE
Confidence 4688999743 2 89999998 77 478884 3 599999973 5666666432 1 4432
Q ss_pred -c-CcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEccceeEecCc
Q 043115 122 -A-SHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGNA 191 (196)
Q Consensus 122 -a-~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~G~g 191 (196)
+ .++++.|+.|.... ..+ ..+.....++.|.+|.|.|+..+-+.-.+....+.|+--|-.==|-+.|
T Consensus 118 ~gM~~VtF~ni~F~~~~--~~~-g~~f~~~t~~~~hgC~F~gf~g~cl~~~~~~~VrGC~F~~C~~gi~~~~ 186 (386)
T PF01696_consen 118 VGMEGVTFVNIRFEGRD--TFS-GVVFHANTNTLFHGCSFFGFHGTCLESWAGGEVRGCTFYGCWKGIVSRG 186 (386)
T ss_pred eeeeeeEEEEEEEecCC--ccc-eeEEEecceEEEEeeEEecCcceeEEEcCCcEEeeeEEEEEEEEeecCC
Confidence 2 35666666666442 122 2234456789999999999965554333444445555444443444444
No 51
>PLN02773 pectinesterase
Probab=96.24 E-value=0.034 Score=49.21 Aligned_cols=62 Identities=11% Similarity=0.109 Sum_probs=49.0
Q ss_pred CCCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEE
Q 043115 113 LDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIE 181 (196)
Q Consensus 113 ~~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~ 181 (196)
..+..|.+.+|...++|..|...- -.|+.+..+..|++|.|+|.=|=+| +.|..+|++|.|.
T Consensus 120 gQAvAl~v~gDr~~f~~c~~~G~Q------DTL~~~~gr~yf~~c~IeG~VDFIF-G~g~a~Fe~c~i~ 181 (317)
T PLN02773 120 GQAVAIRVTADRCAFYNCRFLGWQ------DTLYLHYGKQYLRDCYIEGSVDFIF-GNSTALLEHCHIH 181 (317)
T ss_pred CcEEEEEecCccEEEEccEeeccc------ceeEeCCCCEEEEeeEEeecccEEe-eccEEEEEeeEEE
Confidence 356678899999999999998321 2356667788999999999988887 4688888888886
No 52
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=96.17 E-value=0.078 Score=50.18 Aligned_cols=62 Identities=18% Similarity=0.214 Sum_probs=46.2
Q ss_pred CCCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEE
Q 043115 113 LDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIE 181 (196)
Q Consensus 113 ~~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~ 181 (196)
..+..|.+.+|...+++-.|...-+ .|+.++.+..|++|.|+|.=|-+|. +|..+|++|.|.
T Consensus 335 ~QAVAl~v~~D~~~fy~c~~~G~QD------TLy~~~~Rqyy~~C~I~GtVDFIFG-~a~avfq~c~i~ 396 (541)
T PLN02416 335 HQAVALRVNADLVALYRCTINGYQD------TLYVHSFRQFYRECDIYGTIDYIFG-NAAVVFQACNIV 396 (541)
T ss_pred CceEEEEEcCccEEEEcceEecccc------hhccCCCceEEEeeEEeeccceeec-cceEEEeccEEE
Confidence 3566788999999999999984322 2455667778888888888887763 577777777774
No 53
>PLN02480 Probable pectinesterase
Probab=96.00 E-value=0.063 Score=48.01 Aligned_cols=63 Identities=17% Similarity=0.156 Sum_probs=50.0
Q ss_pred CCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEcc
Q 043115 114 DSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGA 183 (196)
Q Consensus 114 ~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G~ 183 (196)
.+-.+.+.+|...++|..|... |. .|+.+..+..|++|.|+|.=|=+|. +|+.+|++|.|.-.
T Consensus 156 QAVAl~v~gDra~f~~c~f~G~-----QD-TLy~~~gR~yf~~C~IeG~VDFIFG-~g~a~fe~C~i~s~ 218 (343)
T PLN02480 156 QSVAAFVGADKVAFYHCAFYST-----HN-TLFDYKGRHYYHSCYIQGSIDFIFG-RGRSIFHNCEIFVI 218 (343)
T ss_pred ceEEEEecCCcEEEEeeEEecc-----cc-eeEeCCCCEEEEeCEEEeeeeEEcc-ceeEEEEccEEEEe
Confidence 3445667899999999999833 22 2556778999999999999999974 68999999999853
No 54
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=95.69 E-value=0.29 Score=36.42 Aligned_cols=99 Identities=13% Similarity=0.081 Sum_probs=66.1
Q ss_pred CCeEeeeEEEcCCC-CceEecCCCCCCeEEE-eCCCCCCCCCeEEEEEcCcEEEEEEEEEec--CCC--CCcEEEEEEeC
Q 043115 76 PGIYREKIIVPANK-PFITISGTKASHTKIT-WSDGGSILDSATFTVLASHFVARSLTIQNT--YGS--YGKAVALRVSA 149 (196)
Q Consensus 76 ~G~Y~E~v~I~~~k-~~ItL~G~~~~~v~I~-~~~~~~~~~~~~l~v~a~~v~~~~lti~Ns--~g~--~~~a~al~v~~ 149 (196)
.|.|.+........ +++++.+++ .++|. +. .....+.+.+++++++|+++.+. .|. .....++.-..
T Consensus 3 ~G~~~~~~~~~~~~~~~~~~~~~~--~~vi~~~~-----~~~~~~~i~~~~~~~~G~~~~~~~~~G~~~~~~~~~~~~~~ 75 (146)
T smart00722 3 NGIVLELLRIAVHYMGNVTNGGSG--GAVITDGS-----GRGSNITINSNDVRVDGITIGGSTVTGIYVSASGDGVIQNT 75 (146)
T ss_pred cCCeEEeccccccccCCeEeeCcC--CEEEEecC-----CcEEEEEEeCCCCEEECeEEEeEEeeCcccccCCceEecCc
Confidence 45555544432111 248888887 77887 43 34578899999999999999983 332 22334444456
Q ss_pred CcEEEEccEEeec----ceEEEec-CCceeEEcCEEE
Q 043115 150 DRAAFYGCRILSY----QHTLLDD-TGNHYYSKCIIE 181 (196)
Q Consensus 150 d~~~~~~c~~~g~----QDTl~~~-~gr~~f~~c~I~ 181 (196)
++..++++.+.+. ...++.. ..+..|.++.|+
T Consensus 76 ~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~ 112 (146)
T smart00722 76 GKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII 112 (146)
T ss_pred cccEEEcceecCCCccceEEEEEECCccceEecCeEE
Confidence 7899999999975 7777765 444567777777
No 55
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=95.61 E-value=0.093 Score=45.98 Aligned_cols=62 Identities=15% Similarity=0.255 Sum_probs=44.3
Q ss_pred CCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEc
Q 043115 114 DSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEG 182 (196)
Q Consensus 114 ~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G 182 (196)
.+..|.+.+|...+++..|...- . .|+.++.+..|++|.|+|.=|=+|. .|..+|++|.|.-
T Consensus 106 qAvAl~~~~d~~~f~~c~~~g~Q-----D-TL~~~~~r~y~~~c~IeG~vDFIfG-~~~a~f~~c~i~~ 167 (298)
T PF01095_consen 106 QAVALRVSGDRAAFYNCRFLGYQ-----D-TLYANGGRQYFKNCYIEGNVDFIFG-NGTAVFENCTIHS 167 (298)
T ss_dssp ---SEEET-TSEEEEEEEEE-ST-----T--EEE-SSEEEEES-EEEESEEEEEE-SSEEEEES-EEEE
T ss_pred ceeeeeecCCcEEEEEeEEcccc-----c-eeeeccceeEEEeeEEEecCcEEEC-CeeEEeeeeEEEE
Confidence 44568889999999999998432 2 3567788899999999999999985 6788999999883
No 56
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=95.57 E-value=0.08 Score=50.21 Aligned_cols=62 Identities=15% Similarity=0.225 Sum_probs=43.7
Q ss_pred CCCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEE
Q 043115 113 LDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIE 181 (196)
Q Consensus 113 ~~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~ 181 (196)
..+..|.+.+|...++|-.|...-+ .|+.++.+..|++|.|+|.=|=+|. +|..+|++|.|.
T Consensus 348 ~QAVAlrv~~D~~~f~~c~~~G~QD------TLy~~~~rq~y~~C~I~GtVDFIFG-~a~avfq~c~i~ 409 (553)
T PLN02708 348 HQAVAFRSDSDLSVIENCEFLGNQD------TLYAHSLRQFYKSCRIQGNVDFIFG-NSAAVFQDCAIL 409 (553)
T ss_pred CceEEEEecCCcEEEEeeeeeeccc------cceeCCCceEEEeeEEeecCCEEec-CceEEEEccEEE
Confidence 3566788999999999999994422 2455566667777777777777653 566677777765
No 57
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=95.54 E-value=0.21 Score=46.13 Aligned_cols=136 Identities=19% Similarity=0.232 Sum_probs=83.0
Q ss_pred CCcchHHHHHhhCCCCCCceEEEEEcCCeEe-eeEEEcCCCCceEecCCCCC----CeEEEeCCCCCCCCCeEEEEEcCc
Q 043115 50 GDFRTIQGAIDSVPDNNSELVFISVAPGIYR-EKIIVPANKPFITISGTKAS----HTKITWSDGGSILDSATFTVLASH 124 (196)
Q Consensus 50 g~y~tIq~AI~aa~~g~~~~~~I~I~~G~Y~-E~v~I~~~k~~ItL~G~~~~----~v~I~~~~~~~~~~~~~l~v~a~~ 124 (196)
..|..|.+|+..+...+- ...|++..|+|+ |.+.|+. .|.|+|..+. .|++++... .+|.... +
T Consensus 30 ~~fD~iEea~~~l~e~~~-e~LIFlH~G~~e~~~i~I~s---dvqiiGAs~~dia~sVvle~~~~------t~l~F~~-~ 98 (625)
T KOG1777|consen 30 QCFDHIEEALRFLDENDE-EKLIFLHEGTHETETIRITS---DVQIIGASPSDIATSVVLEGRHA------TTLEFQE-S 98 (625)
T ss_pred HhhhhHHHHhhhcccccc-cceEEEEeccccceEEEEcC---CeeEeccCCccceeeEEEecccc------cEEEEee-c
Confidence 557899999987765542 247999999999 8899953 4999998643 467776532 1222111 1
Q ss_pred EE-----------------------------EEEEEEEecCCC--------------------CCcEEEEEEe-CCcEEE
Q 043115 125 FV-----------------------------ARSLTIQNTYGS--------------------YGKAVALRVS-ADRAAF 154 (196)
Q Consensus 125 v~-----------------------------~~~lti~Ns~g~--------------------~~~a~al~v~-~d~~~~ 154 (196)
.. ++..-|+.+.+. .-..+++++. --.-.+
T Consensus 99 AY~Gy~Tvkf~~d~~h~~h~~ld~~~d~~p~ie~c~i~s~~~~g~Avcv~g~a~P~~~~c~isDceNvglyvTd~a~g~y 178 (625)
T KOG1777|consen 99 AYVGYVTVKFEPDQEHHAHVCLDIEVDASPAIEECIIRSTGGVGAAVCVPGEAEPEIKLCAISDCENVGLYVTDHAQGIY 178 (625)
T ss_pred ceEEEEEEEeccccccceeEEEeeccCCCcccccccccCCCccCcccccCCccCcceeecccccCcceeEEEEeccccce
Confidence 11 111122211110 0123445553 223467
Q ss_pred EccEEeecce-EEEec-CCceeEEcCEEEccce---eEecCcceeeC
Q 043115 155 YGCRILSYQH-TLLDD-TGNHYYSKCIIEGATD---FISGNANSLFE 196 (196)
Q Consensus 155 ~~c~~~g~QD-Tl~~~-~gr~~f~~c~I~G~vD---fI~G~g~a~fe 196 (196)
+.|+|..+-+ .+|++ .....+++|+|.+.-| |+|=.|..+||
T Consensus 179 Eh~ei~~NalA~vwvknha~p~~R~~~ih~G~dvGiftf~hg~Gy~e 225 (625)
T KOG1777|consen 179 EHCEISRNALAGVWVKNHAFPTMRNCTIHHGRDVGIFTFEHGQGYFE 225 (625)
T ss_pred ecchhccccccceeeccccChhhhhceeecCCccceEEeccCcCCCc
Confidence 7888886633 34665 5667999999998777 78877777775
No 58
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=95.45 E-value=0.028 Score=46.37 Aligned_cols=107 Identities=21% Similarity=0.242 Sum_probs=63.2
Q ss_pred EcCCeEe--eeEEEcCCCCceEecCCCCCCeEEEeCCCCCCCCCeEEEEEcCcEEEEEEEEEec--------CCC--CCc
Q 043115 74 VAPGIYR--EKIIVPANKPFITISGTKASHTKITWSDGGSILDSATFTVLASHFVARSLTIQNT--------YGS--YGK 141 (196)
Q Consensus 74 I~~G~Y~--E~v~I~~~k~~ItL~G~~~~~v~I~~~~~~~~~~~~~l~v~a~~v~~~~lti~Ns--------~g~--~~~ 141 (196)
--.|+.. +++.+. .+.||.|.+.+. .|.+.. -.+.-.++|+.++||+|++. .+. ...
T Consensus 6 ~~~g~i~~~~~i~v~---snkTi~G~g~~~-~i~~~G-------~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~ 74 (200)
T PF00544_consen 6 KVSGTIDLKSPISVG---SNKTIIGIGAGA-TIIGGG-------LRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSD 74 (200)
T ss_dssp EEHHCCHHHCEEEEE---SSEEEEEETTTT-EEESSE-------EEEEESCEEEEEES-EEECEEEECSTEEETTEEECS
T ss_pred EEEeEEccCCeEEEC---CCcEEEEccCCe-EEECce-------EEEecCCCeEEEECCEEEeccccCCcccCCCccccC
Confidence 3346654 577774 357999987544 454431 12222589999999999982 011 122
Q ss_pred EEEEEE-eCCcEEEEccEEeec--------ceEEEe-cCC--ceeEEcCEEEcc-ceeEecCc
Q 043115 142 AVALRV-SADRAAFYGCRILSY--------QHTLLD-DTG--NHYYSKCIIEGA-TDFISGNA 191 (196)
Q Consensus 142 a~al~v-~~d~~~~~~c~~~g~--------QDTl~~-~~g--r~~f~~c~I~G~-vDfI~G~g 191 (196)
.-|+.+ .+.++.+..|+|... .|.++. ..+ .-.+.+|++.+. --.++|..
T Consensus 75 ~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~ 137 (200)
T PF00544_consen 75 GDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSS 137 (200)
T ss_dssp --SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSC
T ss_pred CCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCC
Confidence 333444 567999999999977 777754 333 447788888754 22456654
No 59
>PLN02634 probable pectinesterase
Probab=95.36 E-value=0.13 Score=46.29 Aligned_cols=62 Identities=16% Similarity=0.273 Sum_probs=50.7
Q ss_pred CCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEc
Q 043115 114 DSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEG 182 (196)
Q Consensus 114 ~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G 182 (196)
.+..|.+.+|...+++-.|... |. .|+.+..+..|++|.|+|.=|-+| ++|+.+|++|.|.-
T Consensus 173 QAVAl~v~gDra~f~~C~f~G~-----QD-TL~~~~gR~yf~~CyIeG~VDFIF-G~g~a~Fe~C~I~s 234 (359)
T PLN02634 173 QAVAFRISGDKAFFFGCGFYGA-----QD-TLCDDAGRHYFKECYIEGSIDFIF-GNGRSMYKDCELHS 234 (359)
T ss_pred ceEEEEecCCcEEEEEeEEecc-----cc-eeeeCCCCEEEEeeEEcccccEEc-CCceEEEeccEEEE
Confidence 4566888999999999999932 22 245677899999999999999998 57889999999974
No 60
>PLN02304 probable pectinesterase
Probab=95.29 E-value=0.13 Score=46.55 Aligned_cols=62 Identities=11% Similarity=0.215 Sum_probs=50.1
Q ss_pred CCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEc
Q 043115 114 DSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEG 182 (196)
Q Consensus 114 ~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G 182 (196)
.+..|.+.+|...+++..|... |. .|+.+..+..|++|.|+|.=|-+|. .|+.+|++|.|.-
T Consensus 186 QAVAL~v~gDra~fy~C~f~G~-----QD-TLy~~~gR~Yf~~CyIeG~VDFIFG-~g~A~Fe~C~I~s 247 (379)
T PLN02304 186 QAVAIRIAGDQAAFWGCGFFGA-----QD-TLHDDRGRHYFKDCYIQGSIDFIFG-DARSLYENCRLIS 247 (379)
T ss_pred cEEEEEecCCcEEEEeceEecc-----cc-eeEeCCCCEEEEeeEEcccccEEec-cceEEEEccEEEE
Confidence 4566888999999999999833 22 2566778899999999999999974 6889999999973
No 61
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=95.25 E-value=0.096 Score=49.55 Aligned_cols=63 Identities=14% Similarity=0.225 Sum_probs=46.8
Q ss_pred CCCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEc
Q 043115 113 LDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEG 182 (196)
Q Consensus 113 ~~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G 182 (196)
..+..|.+.+|...+++-.|...-+ .|+.++.+..|++|.|+|.=|-+|. +|..+|++|.|.-
T Consensus 330 ~QAVAlrv~~Dr~~f~~c~~~G~QD------TLy~~~~Rqyy~~C~I~GtVDFIFG-~a~avf~~C~i~~ 392 (539)
T PLN02995 330 GQAVALRSSSDLSIFYKCSIEGYQD------TLMVHSQRQFYRECYIYGTVDFIFG-NAAAVFQNCIILP 392 (539)
T ss_pred CceEEEEEcCCceeEEcceEecccc------hhccCCCceEEEeeEEeeccceEec-ccceEEeccEEEE
Confidence 3566788899999999999984422 2455667778888888888888764 6777788877753
No 62
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=95.24 E-value=0.13 Score=49.01 Aligned_cols=61 Identities=11% Similarity=0.147 Sum_probs=45.3
Q ss_pred CCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEE
Q 043115 114 DSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIE 181 (196)
Q Consensus 114 ~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~ 181 (196)
.+..+.+.+|...+++-.|...-+ .|+.+..+..|++|.|+|.=|-+| ++|..+|++|.|.
T Consensus 359 QAVAlrv~~D~~~fy~C~~~G~QD------TLy~~~~Rqyy~~C~I~GtVDFIF-G~a~avfq~C~i~ 419 (566)
T PLN02713 359 QAVALRSGADLSTFYSCSFEAYQD------TLYTHSLRQFYRECDIYGTVDFIF-GNAAVVFQNCNLY 419 (566)
T ss_pred ceEEEEecCCcEEEEeeeeccCCc------ceEECCCCEEEEeeEEecccceec-ccceEEEeccEEE
Confidence 456688899999999999984322 245666778888888888888776 3677777777774
No 63
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=95.24 E-value=0.14 Score=48.27 Aligned_cols=63 Identities=13% Similarity=0.182 Sum_probs=46.0
Q ss_pred CCCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEc
Q 043115 113 LDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEG 182 (196)
Q Consensus 113 ~~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G 182 (196)
..+..+.+.+|...+++..|...-+ .|+.+..+..|++|.|+|.=|=+|. +|..+|++|.|.-
T Consensus 311 ~QAVAlrv~~D~~~fy~C~f~G~QD------TLy~~~~Rqyy~~C~I~GtVDFIFG-~a~avf~~C~i~~ 373 (520)
T PLN02201 311 HQAVALRSDSDLSVFYRCAMRGYQD------TLYTHTMRQFYRECRITGTVDFIFG-DATAVFQNCQILA 373 (520)
T ss_pred CceEEEEEcCCcEEEEeeeeeccCC------eeEeCCCCEEEEeeEEeecccEEec-CceEEEEccEEEE
Confidence 3566788999999999999984321 2456667777888888887777763 5777777777753
No 64
>PLN02916 pectinesterase family protein
Probab=95.23 E-value=0.15 Score=47.82 Aligned_cols=62 Identities=15% Similarity=0.165 Sum_probs=47.8
Q ss_pred CCCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEE
Q 043115 113 LDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIE 181 (196)
Q Consensus 113 ~~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~ 181 (196)
..+..|.+.+|...+++-.|...- -.|+.++.+..|++|.|+|.=|=+|. ++..+|++|.|.
T Consensus 295 ~QAVALrv~~D~a~fy~C~f~G~Q------DTLy~~~~Rqyy~~C~I~GtVDFIFG-~a~avFq~C~I~ 356 (502)
T PLN02916 295 HQAVALRVSSDLSVFYRCSFKGYQ------DTLFVHSLRQFYRDCHIYGTIDFIFG-DAAVVFQNCDIF 356 (502)
T ss_pred CceEEEEEcCCcEEEEeeeEeccC------ceeEeCCCCEEEEecEEecccceecc-CceEEEecCEEE
Confidence 355678889999999999998432 13566677888888888888888874 677888888875
No 65
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=95.22 E-value=0.11 Score=48.99 Aligned_cols=64 Identities=11% Similarity=0.159 Sum_probs=51.0
Q ss_pred CCCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEcc
Q 043115 113 LDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGA 183 (196)
Q Consensus 113 ~~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G~ 183 (196)
..+..+.+.+|...+++..|...-+ .|+.++.+..|++|.|+|.=|=+|. +|..+|++|.|.-.
T Consensus 331 ~QAVALrv~gDr~~fy~C~f~GyQD------TLy~~~~Rqyy~~C~I~GtVDFIFG-~a~avFq~C~I~~~ 394 (529)
T PLN02170 331 EQAVALRVGSDKSVVYRCSVEGYQD------SLYTHSKRQFYRETDITGTVDFIFG-NSAVVFQSCNIAAR 394 (529)
T ss_pred CceEEEEecCCcEEEEeeeEeccCC------cceeCCCCEEEEeeEEccccceecc-cceEEEeccEEEEe
Confidence 3567788999999999999983322 2566778889999999999998874 68889999998743
No 66
>PLN02682 pectinesterase family protein
Probab=95.17 E-value=0.13 Score=46.48 Aligned_cols=61 Identities=15% Similarity=0.200 Sum_probs=49.3
Q ss_pred CCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEE
Q 043115 114 DSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIE 181 (196)
Q Consensus 114 ~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~ 181 (196)
.+..|.+.+|...++|..|...- -.|+.+..+..|++|.|+|.=|-+|. +|..+|++|.|.
T Consensus 187 QAVAL~v~gDr~~fy~C~f~G~Q------DTLy~~~gRqyf~~C~IeG~VDFIFG-~g~a~Fe~C~I~ 247 (369)
T PLN02682 187 QAVALRISADTAAFYGCKFLGAQ------DTLYDHLGRHYFKDCYIEGSVDFIFG-NGLSLYEGCHLH 247 (369)
T ss_pred cEEEEEecCCcEEEEcceEeccc------cceEECCCCEEEEeeEEcccccEEec-CceEEEEccEEE
Confidence 45668889999999999998332 22456778899999999999999974 688899999996
No 67
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=95.17 E-value=0.12 Score=49.25 Aligned_cols=62 Identities=18% Similarity=0.218 Sum_probs=46.7
Q ss_pred CCCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEE
Q 043115 113 LDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIE 181 (196)
Q Consensus 113 ~~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~ 181 (196)
..+..|.+.+|...+++-.|...-+ .|+.++.+..|++|.|+|.=|=+| +++..+|++|.|.
T Consensus 365 ~QAVAlrv~~D~~~f~~c~~~G~QD------TLy~~~~Rqyy~~C~I~GtVDFIF-G~a~avf~~C~i~ 426 (572)
T PLN02990 365 HQAVALRVSADYAVFYNCQIDGYQD------TLYVHSHRQFFRDCTVSGTVDFIF-GDAKVVLQNCNIV 426 (572)
T ss_pred CceEEEEEcCCcEEEEeeeEecccc------hhccCCCcEEEEeeEEecccceEc-cCceEEEEccEEE
Confidence 4566788999999999999984321 245566778888888888888776 4677788888875
No 68
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=95.14 E-value=0.11 Score=50.25 Aligned_cols=62 Identities=13% Similarity=0.242 Sum_probs=44.2
Q ss_pred CCCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEE
Q 043115 113 LDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIE 181 (196)
Q Consensus 113 ~~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~ 181 (196)
.++..|.+.+|...+++-.|...-+ .|+.++.|..|++|.|+|.=|=+| +++..+|+||.|.
T Consensus 355 ~QAVAlrv~~Dra~fy~C~f~G~QD------TLy~~~~Rqyy~~C~I~GtVDFIF-G~a~avfq~C~I~ 416 (670)
T PLN02217 355 HQAVAIRVLSDESIFYNCKFDGYQD------TLYAHSHRQFYRDCTISGTIDFLF-GDAAAVFQNCTLL 416 (670)
T ss_pred CceEEEEecCCcEEEEcceeeeccc------hhccCCCcEEEEeCEEEEeccEEe-cCceEEEEccEEE
Confidence 3566788999999999999984321 245556677777777777777776 4566777777775
No 69
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=95.10 E-value=0.12 Score=48.97 Aligned_cols=63 Identities=13% Similarity=0.169 Sum_probs=49.9
Q ss_pred CCCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEc
Q 043115 113 LDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEG 182 (196)
Q Consensus 113 ~~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G 182 (196)
..+..|.+.+|...+++-.|...- -.|+.++.+..|++|.|+|.=|=+| ++|..+|++|.|.-
T Consensus 337 ~QAVAl~v~~D~~~fy~C~~~G~Q------DTLy~~~~rqyy~~C~I~GtVDFIF-G~a~avfq~C~i~~ 399 (537)
T PLN02506 337 HQAVALRVDSDQSAFYRCSMEGYQ------DTLYAHSLRQFYRECEIYGTIDFIF-GNGAAVLQNCKIYT 399 (537)
T ss_pred CceEEEEecCCcEEEEcceeeccc------ccceecCCceEEEeeEEecccceEc-cCceeEEeccEEEE
Confidence 456778899999999999998332 1256677788999999999988887 46888999998864
No 70
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=95.03 E-value=0.16 Score=47.86 Aligned_cols=62 Identities=10% Similarity=0.179 Sum_probs=44.4
Q ss_pred CCCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEE
Q 043115 113 LDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIE 181 (196)
Q Consensus 113 ~~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~ 181 (196)
..+..|.+.+|...+++..|...-+ .|+.++.+..|++|.|+|.=|=+|. ++..+|++|.|.
T Consensus 323 ~QAVAlrv~~Dra~fy~C~f~G~QD------TLy~~~~Rqyy~~C~IeGtVDFIFG-~a~avFq~C~i~ 384 (530)
T PLN02933 323 HQAVALRSGSDHSAFYRCEFDGYQD------TLYVHSAKQFYRECDIYGTIDFIFG-NAAVVFQNCSLY 384 (530)
T ss_pred CceEEEEEcCCcEEEEEeEEEeccc------ccccCCCceEEEeeEEecccceecc-CceEEEeccEEE
Confidence 3556788899999999999984422 2455566777777777777777763 566777777774
No 71
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=95.02 E-value=0.44 Score=39.49 Aligned_cols=113 Identities=15% Similarity=0.050 Sum_probs=60.1
Q ss_pred hhCCCCCCceEEEEEcCCeEeeeE---EEcCCCCceEecCCC-------CCCeEEEeCCCCCCCCCeEEEEEcCcEEEEE
Q 043115 60 DSVPDNNSELVFISVAPGIYREKI---IVPANKPFITISGTK-------ASHTKITWSDGGSILDSATFTVLASHFVARS 129 (196)
Q Consensus 60 ~aa~~g~~~~~~I~I~~G~Y~E~v---~I~~~k~~ItL~G~~-------~~~v~I~~~~~~~~~~~~~l~v~a~~v~~~~ 129 (196)
+.+.+++ +|++.+|+|-+.. .|.. .++.... ....+|....-. ..........+++.++++
T Consensus 2 ~n~i~G~----~i~~~~Gi~l~~~~~~~i~~----n~i~~~~~gi~~~~s~~~~I~~n~i~-~~~~GI~~~~s~~~~i~~ 72 (236)
T PF05048_consen 2 NNAISGD----TIFVSNGIYLWNSSNNSIEN----NTISNSRDGIYVENSDNNTISNNTIS-NNRYGIHLMGSSNNTIEN 72 (236)
T ss_pred ccccCCC----eEEEcCcEEEEeCCCCEEEc----CEEEeCCCEEEEEEcCCeEEEeeEEE-CCCeEEEEEccCCCEEEe
Confidence 4566787 8999999997653 2210 1222111 112223222100 011233334455667777
Q ss_pred EEEEecCCCCCcEEEEEEe-CCcEEEEccEEeecceEEEecCCc-eeEEcCEEEccceeE
Q 043115 130 LTIQNTYGSYGKAVALRVS-ADRAAFYGCRILSYQHTLLDDTGN-HYYSKCIIEGATDFI 187 (196)
Q Consensus 130 lti~Ns~g~~~~a~al~v~-~d~~~~~~c~~~g~QDTl~~~~gr-~~f~~c~I~G~vDfI 187 (196)
-++.+.. .++.+. +.+..++++.|.+..+.+++.... ..++++.|.++-.=|
T Consensus 73 n~i~~n~------~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~s~~~~I~~N~i~~~~~GI 126 (236)
T PF05048_consen 73 NTISNNG------YGIYLMGSSNNTISNNTISNNGYGIYLYGSSNNTISNNTISNNGYGI 126 (236)
T ss_pred EEEEccC------CCEEEEcCCCcEEECCEecCCCceEEEeeCCceEEECcEEeCCCEEE
Confidence 7776543 334443 233589999999887788775443 467777776444433
No 72
>PLN02314 pectinesterase
Probab=95.01 E-value=0.17 Score=48.37 Aligned_cols=62 Identities=13% Similarity=0.218 Sum_probs=48.0
Q ss_pred CCCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEE
Q 043115 113 LDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIE 181 (196)
Q Consensus 113 ~~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~ 181 (196)
..+..|.+.+|...+++-.|...-+ .|+.++.+..|++|.|.|.=|=+|. ++..+|++|.|.
T Consensus 383 ~QAvAlrv~~D~~~f~~c~~~G~QD------TLy~~~~rq~y~~C~I~GtvDFIFG-~a~avf~~c~i~ 444 (586)
T PLN02314 383 HQAVAFRSGSDMSVFYQCSFDAFQD------TLYAHSNRQFYRDCDITGTIDFIFG-NAAVVFQNCNIQ 444 (586)
T ss_pred CceEEEEecCCcEEEEeeEEEeccc------hheeCCCCEEEEeeEEEeccceecc-CceeeeeccEEE
Confidence 3556788999999999999994322 2566777888888888888888864 677888888885
No 73
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=94.98 E-value=0.16 Score=48.41 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=46.1
Q ss_pred CCCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEE
Q 043115 113 LDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIE 181 (196)
Q Consensus 113 ~~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~ 181 (196)
..+..|.+.+|...+++-.|...-. .|+.++.+..|++|.|+|.=|=+| +++..+|++|.|.
T Consensus 363 ~QAVAl~v~~D~~~fy~c~~~G~QD------TLy~~~~rq~y~~C~I~GtvDFIF-G~a~avfq~c~i~ 424 (565)
T PLN02468 363 HQAVALMSSADLSVFYRCTMDAFQD------TLYAHAQRQFYRECNIYGTVDFIF-GNSAVVFQNCNIL 424 (565)
T ss_pred CceEEEEEcCCcEEEEEeEEEeccc------hhccCCCceEEEeeEEecccceee-ccceEEEeccEEE
Confidence 3566788999999999999984422 245566677788888888888776 3577777777775
No 74
>PLN02432 putative pectinesterase
Probab=94.97 E-value=0.11 Score=45.44 Aligned_cols=62 Identities=13% Similarity=0.166 Sum_probs=51.0
Q ss_pred CCCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEE
Q 043115 113 LDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIE 181 (196)
Q Consensus 113 ~~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~ 181 (196)
..+..|.+.+|...+++..|... .-.|+.+..+..|++|.|+|.=|=+| +.|..+|++|.|.
T Consensus 111 ~QAvAl~v~gDr~~f~~c~~~G~------QDTLy~~~gr~yf~~c~I~G~VDFIF-G~g~a~Fe~c~i~ 172 (293)
T PLN02432 111 GKAVALRVAGDRAAFYGCRILSY------QDTLLDDTGRHYYRNCYIEGATDFIC-GNAASLFEKCHLH 172 (293)
T ss_pred CceEEEEEcCCcEEEEcceEecc------cceeEECCCCEEEEeCEEEecccEEe-cCceEEEEeeEEE
Confidence 35677889999999999999832 22346677899999999999999998 4789999999996
No 75
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=94.96 E-value=0.18 Score=48.29 Aligned_cols=62 Identities=11% Similarity=0.224 Sum_probs=41.7
Q ss_pred CCCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEE
Q 043115 113 LDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIE 181 (196)
Q Consensus 113 ~~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~ 181 (196)
..+..|.+.+|...+++..|...-+ .|+.+..+..|++|.|+|.=|=+| ++|..+|++|.|.
T Consensus 390 ~QAVAl~v~~Dr~~f~~c~~~G~QD------TLy~~~~Rqyy~~C~I~GtVDFIF-G~a~avf~~C~i~ 451 (596)
T PLN02745 390 HQAVAIRVQSDRSIFLNCRFEGYQD------TLYAQTHRQFYRSCVITGTIDFIF-GDAAAIFQNCLIF 451 (596)
T ss_pred CceEEEEEcCCcEEEEeeEEeeccc------ccccCCCcEEEEeeEEEeeccEEe-cceeEEEEecEEE
Confidence 3566788999999999999994432 134455566677777776666554 3566666666664
No 76
>PLN02197 pectinesterase
Probab=94.93 E-value=0.19 Score=48.07 Aligned_cols=62 Identities=10% Similarity=0.075 Sum_probs=44.9
Q ss_pred CCCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEE
Q 043115 113 LDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIE 181 (196)
Q Consensus 113 ~~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~ 181 (196)
..+..|.+.+|...+++-.|...-+ .|+.+..+..|++|.|+|.=|=+| +++..+|++|.|.
T Consensus 382 ~QAVAlrv~~D~~~fy~C~f~GyQD------TLy~~~~Rqyy~~C~I~GtVDFIF-G~a~avfq~C~i~ 443 (588)
T PLN02197 382 HQAVAIRVNGDRAVIFNCRFDGYQD------TLYVNNGRQFYRNIVVSGTVDFIF-GKSATVIQNSLIV 443 (588)
T ss_pred CceEEEEecCCcEEEEEeEEEecCc------ceEecCCCEEEEeeEEEecccccc-cceeeeeecCEEE
Confidence 3566788999999999999994432 245566777777788877777775 3566777777765
No 77
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=94.85 E-value=0.15 Score=48.76 Aligned_cols=62 Identities=21% Similarity=0.262 Sum_probs=45.4
Q ss_pred CCCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEE
Q 043115 113 LDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIE 181 (196)
Q Consensus 113 ~~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~ 181 (196)
..+..|.+.+|...++|-.|...-+ .|+.+..+..|++|.|+|.=|=+| +++..+|++|.|.
T Consensus 378 ~QAvAlrv~~D~~~fy~C~~~G~QD------TLy~~~~Rqyy~~C~I~GtVDFIF-G~a~avfq~C~i~ 439 (587)
T PLN02484 378 HQAVALRVGADHAVVYRCNIIGYQD------TLYVHSNRQFFRECDIYGTVDFIF-GNAAVVLQNCSIY 439 (587)
T ss_pred CceEEEEecCCcEEEEeeeEeccCc------ccccCCCcEEEEecEEEeccceec-ccceeEEeccEEE
Confidence 3567788999999999999984322 245566777778888887777776 3577777777775
No 78
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=94.84 E-value=0.17 Score=48.00 Aligned_cols=62 Identities=15% Similarity=0.161 Sum_probs=45.0
Q ss_pred CCCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEE
Q 043115 113 LDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIE 181 (196)
Q Consensus 113 ~~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~ 181 (196)
..+..|.+.+|...+++-.|...-+ .|+.++.+..|++|.|+|.=|=+| ++|..+|++|.|.
T Consensus 341 ~QAVAlrv~~D~~~fy~C~~~G~QD------TLy~~~~Rqyy~~C~I~GtVDFIF-G~a~avfq~c~i~ 402 (548)
T PLN02301 341 HQAVALRVSADQAVINRCRIDAYQD------TLYAHSLRQFYRDSYITGTVDFIF-GNAAVVFQNCKIV 402 (548)
T ss_pred CceEEEEecCCcEEEEeeeeeeccc------cceecCCcEEEEeeEEEeccceec-ccceeEEeccEEE
Confidence 3566788999999999999984322 245566677788888887777776 3567777777774
No 79
>PLN02497 probable pectinesterase
Probab=94.65 E-value=0.14 Score=45.68 Aligned_cols=61 Identities=18% Similarity=0.264 Sum_probs=49.8
Q ss_pred CCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEE
Q 043115 114 DSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIE 181 (196)
Q Consensus 114 ~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~ 181 (196)
.+..|.+.+|...++|..|...- . .|+.+..+..|++|.|+|.=|-+|. +|+.+|++|.|.
T Consensus 141 QAVAl~v~gDr~~fy~C~f~G~Q-----D-TLy~~~gRqyf~~C~IeG~VDFIFG-~g~a~Fe~C~I~ 201 (331)
T PLN02497 141 PAVAAMIGGDKSAFYSCGFAGVQ-----D-TLWDSDGRHYFKRCTIQGAVDFIFG-SGQSIYESCVIQ 201 (331)
T ss_pred ceEEEEecCCcEEEEeeEEeccc-----c-ceeeCCCcEEEEeCEEEecccEEcc-CceEEEEccEEE
Confidence 35568889999999999999432 1 2456778899999999999999975 688999999997
No 80
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=94.63 E-value=0.23 Score=46.64 Aligned_cols=62 Identities=18% Similarity=0.162 Sum_probs=46.8
Q ss_pred CCCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEE
Q 043115 113 LDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIE 181 (196)
Q Consensus 113 ~~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~ 181 (196)
..+-.|.+.+|...+++-.|...-+ .|+.++.+..|++|.|+|.=|=+| ++|..+|++|.|.
T Consensus 302 ~QAVALrv~~Dra~Fy~C~f~GyQD------TLy~~~~RqyyrdC~I~GtVDFIF-G~a~avFq~C~I~ 363 (509)
T PLN02488 302 GPAVALRVSGDMSVIYRCRIEGYQD------ALYPHRDRQFYRECFITGTVDFIC-GNAAAVFQFCQIV 363 (509)
T ss_pred CceEEEEecCCcEEEEcceeeccCc------ceeeCCCCEEEEeeEEeeccceEe-cceEEEEEccEEE
Confidence 3556688899999999999983321 245667788888888888888876 4677788888875
No 81
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=94.60 E-value=0.53 Score=41.41 Aligned_cols=69 Identities=10% Similarity=0.033 Sum_probs=44.2
Q ss_pred eEEEEEcCcEEEEEEEEEecCCC--CCcEEEEEE-eCCcEEEEccEEeecce-EEEecCC-ceeEEcCEEEccc
Q 043115 116 ATFTVLASHFVARSLTIQNTYGS--YGKAVALRV-SADRAAFYGCRILSYQH-TLLDDTG-NHYYSKCIIEGAT 184 (196)
Q Consensus 116 ~~l~v~a~~v~~~~lti~Ns~g~--~~~a~al~v-~~d~~~~~~c~~~g~QD-Tl~~~~g-r~~f~~c~I~G~v 184 (196)
......+++++++++++...... .....++.. .++++.+++|.+.+..| .+|.+.+ +..|++|+++++.
T Consensus 79 GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~s~~~~v~nN~~~~n~ 152 (314)
T TIGR03805 79 GVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQSQNIVVRNNVAEENV 152 (314)
T ss_pred eEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECCCCCeEEECCEEccCc
Confidence 33344568888998888754322 112344555 46788888888888776 5776544 3477777777654
No 82
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=94.56 E-value=0.25 Score=46.80 Aligned_cols=62 Identities=11% Similarity=0.153 Sum_probs=40.0
Q ss_pred CCCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEE
Q 043115 113 LDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIE 181 (196)
Q Consensus 113 ~~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~ 181 (196)
..+..|.+.+|...+++-.|...-+ .|+.+..+..|++|.|+|.=|=+|. ++..+|++|.|.
T Consensus 331 ~QAvAlrv~~D~~~f~~C~~~gyQD------TLy~~~~rq~y~~c~I~GtVDFIFG-~a~avfq~c~i~ 392 (538)
T PLN03043 331 HQAVALRNNADLSTFYRCSFEGYQD------TLYVHSLRQFYRECDIYGTVDFIFG-NAAAIFQNCNLY 392 (538)
T ss_pred CceEEEEEcCCcEEEEeeEEeccCc------ccccCCCcEEEEeeEEeeccceEee-cceeeeeccEEE
Confidence 3556688899999999999994432 2344455666666666666666553 455555555553
No 83
>PLN02176 putative pectinesterase
Probab=94.55 E-value=0.15 Score=45.55 Aligned_cols=62 Identities=10% Similarity=0.181 Sum_probs=50.3
Q ss_pred CCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEc
Q 043115 114 DSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEG 182 (196)
Q Consensus 114 ~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G 182 (196)
.+..|.+.+|...+++..|... |. .|+.+..+..|++|.|+|.=|-+| +.|+.+|++|.|.-
T Consensus 147 QAVAl~v~gDr~~f~~C~f~G~-----QD-TLy~~~gRqyf~~CyIeG~VDFIF-G~a~a~Fe~C~I~s 208 (340)
T PLN02176 147 PAVAARMLGDKYAIIDSSFDGF-----QD-TLFDGKGRHYYKRCVISGGIDFIF-GYAQSIFEGCTLKL 208 (340)
T ss_pred ceEEEEecCccEEEEccEEecc-----cc-eeEeCCcCEEEEecEEEecccEEe-cCceEEEeccEEEE
Confidence 4556888999999999999932 22 255677899999999999999998 56889999999973
No 84
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=94.48 E-value=0.2 Score=46.93 Aligned_cols=61 Identities=15% Similarity=0.271 Sum_probs=45.8
Q ss_pred CCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEE
Q 043115 114 DSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIE 181 (196)
Q Consensus 114 ~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~ 181 (196)
.+..|.+.+|...+++-.|...-+ .|+.+..+..|++|.|+|.=|=+| +++..+|++|.|.
T Consensus 289 QAvAl~v~~D~~~fy~c~~~G~QD------TLy~~~~rqyy~~C~I~G~vDFIF-G~a~avf~~C~i~ 349 (497)
T PLN02698 289 QAIALSITSDHSVLYRCSIAGYQD------TLYAAALRQFYRECDIYGTIDFIF-GNAAAVFQNCYLF 349 (497)
T ss_pred ceEEEEecCCcEEEEcceeecccc------hheeCCCcEEEEeeEEEeccceEe-cccceeecccEEE
Confidence 456788999999999999983321 245566777888888888888776 4677788888885
No 85
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=94.42 E-value=0.2 Score=47.87 Aligned_cols=62 Identities=15% Similarity=0.187 Sum_probs=41.9
Q ss_pred CCCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEE
Q 043115 113 LDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIE 181 (196)
Q Consensus 113 ~~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~ 181 (196)
..+..|.+.+|...+++-.|...-+ .|+.++.+..|++|.|+|.=|=+| +++..+|++|.|.
T Consensus 380 ~QAvAlrv~~D~~~fy~C~~~g~QD------TLy~~~~rq~y~~c~I~GtvDFIF-G~a~avfq~c~i~ 441 (587)
T PLN02313 380 HQAVALRVGSDFSAFYQCDMFAYQD------TLYVHSNRQFFVKCHITGTVDFIF-GNAAAVLQDCDIN 441 (587)
T ss_pred CceEEEEecCCcEEEEeeeEecccc------hhccCCCcEEEEeeEEeeccceec-cceeEEEEccEEE
Confidence 3566788999999999999984322 244555666667777776666665 3555666666664
No 86
>PLN02665 pectinesterase family protein
Probab=94.33 E-value=0.14 Score=46.22 Aligned_cols=62 Identities=11% Similarity=0.149 Sum_probs=49.1
Q ss_pred CCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCceeEEcCEEEc
Q 043115 114 DSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEG 182 (196)
Q Consensus 114 ~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G 182 (196)
.+..|.+.+|...++|..|... |. .|+.+..+..|++|.|+|.=|=+| +.|+.+|++|.|.=
T Consensus 178 QAVAl~v~gDka~f~~C~f~G~-----QD-TL~~~~gr~yf~~CyIeG~VDFIF-G~g~a~fe~C~i~s 239 (366)
T PLN02665 178 QAVAMRISGDKAAFYNCRFIGF-----QD-TLCDDKGRHFFKDCYIEGTVDFIF-GSGKSLYLNTELHV 239 (366)
T ss_pred ceEEEEEcCCcEEEEcceeccc-----cc-eeEeCCCCEEEEeeEEeeccceec-cccceeeEccEEEE
Confidence 5667888999999999999832 22 245667788999999999988887 56888899998873
No 87
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=93.72 E-value=0.58 Score=43.01 Aligned_cols=62 Identities=8% Similarity=0.046 Sum_probs=47.7
Q ss_pred CCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEE------------eCCcEEEEccEEeecceEEEecCCceeEEcCEEE
Q 043115 114 DSATFTVLASHFVARSLTIQNTYGSYGKAVALRV------------SADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIE 181 (196)
Q Consensus 114 ~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v------------~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~ 181 (196)
....|.+.+|...+++..|...-+ .|+. +..+..|++|.|+|.=|-+| +.|..+|++|.|.
T Consensus 229 QAVALrv~GDra~fy~C~flG~QD------TLy~~~~~~~~~~~~~~~gRqYf~~CyIeG~VDFIF-G~g~AvFenC~I~ 301 (422)
T PRK10531 229 PAVALRTDGDKVQIENVNILGRQD------TFFVTNSGVQNRLETDRQPRTYVKNSYIEGDVDFVF-GRGAVVFDNTEFR 301 (422)
T ss_pred eeEEEEEcCCcEEEEeeEEecccc------eeeeccccccccccccccccEEEEeCEEeecccEEc-cCceEEEEcCEEE
Confidence 456688899999999999994321 1222 34589999999999999997 4688899999986
Q ss_pred c
Q 043115 182 G 182 (196)
Q Consensus 182 G 182 (196)
-
T Consensus 302 s 302 (422)
T PRK10531 302 V 302 (422)
T ss_pred E
Confidence 4
No 88
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=93.70 E-value=0.26 Score=46.62 Aligned_cols=59 Identities=15% Similarity=0.227 Sum_probs=39.3
Q ss_pred EcCcEEEEEEEEEecCCCCCcEEEEEEe-CCcEEEEccEEeecceEEEecCC------------c-eeEEcCEEE
Q 043115 121 LASHFVARSLTIQNTYGSYGKAVALRVS-ADRAAFYGCRILSYQHTLLDDTG------------N-HYYSKCIIE 181 (196)
Q Consensus 121 ~a~~v~~~~lti~Ns~g~~~~a~al~v~-~d~~~~~~c~~~g~QDTl~~~~g------------r-~~f~~c~I~ 181 (196)
..++++++||+|.+.... ...++... -.++.+++|+|...+|+++.+.| + .+|++|+..
T Consensus 268 ~~~nl~~~nl~I~~~~~~--NtDG~d~~sc~NvlI~~~~fdtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~ 340 (542)
T COG5434 268 DCDNLTFRNLTIDANRFD--NTDGFDPGSCSNVLIEGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFS 340 (542)
T ss_pred cccCceecceEEECCCCC--CCCccccccceeEEEeccEEecCCceEEeecccCCcccccccccccEEEecceec
Confidence 445556666666554432 23344553 36799999999999999987532 2 478999876
No 89
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=90.16 E-value=3.5 Score=37.76 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=40.0
Q ss_pred EcCcEEEEEEEEEe------cCCC----------------CC-cEEEEEEeCCcEEEEccEEeecceEEEecC-C-----
Q 043115 121 LASHFVARSLTIQN------TYGS----------------YG-KAVALRVSADRAAFYGCRILSYQHTLLDDT-G----- 171 (196)
Q Consensus 121 ~a~~v~~~~lti~N------s~g~----------------~~-~a~al~v~~d~~~~~~c~~~g~QDTl~~~~-g----- 171 (196)
..++++++||+|.| +.|- .+ ..+++.-..+++.++||....... +-.+. |
T Consensus 185 ~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghG-isiGSlG~~~~~ 263 (404)
T PLN02188 185 ECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHG-ISVGSLGRYPNE 263 (404)
T ss_pred ccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCc-EEeCCCCCCCcC
Confidence 46788888888875 1110 12 356665567799999998864443 33221 1
Q ss_pred ----ceeEEcCEEEccc
Q 043115 172 ----NHYYSKCIIEGAT 184 (196)
Q Consensus 172 ----r~~f~~c~I~G~v 184 (196)
.-+++||++.+..
T Consensus 264 ~~V~nV~v~n~~~~~t~ 280 (404)
T PLN02188 264 GDVTGLVVRDCTFTGTT 280 (404)
T ss_pred CcEEEEEEEeeEEECCC
Confidence 2378999988864
No 90
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=90.10 E-value=6.1 Score=36.73 Aligned_cols=87 Identities=14% Similarity=0.038 Sum_probs=45.7
Q ss_pred CCceEecCCCCCCeEEEeCCCC-CCCCCeEEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceE-E
Q 043115 89 KPFITISGTKASHTKITWSDGG-SILDSATFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHT-L 166 (196)
Q Consensus 89 k~~ItL~G~~~~~v~I~~~~~~-~~~~~~~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDT-l 166 (196)
-++|+|.|.. |++.... ....+..+...+++++++|.+++|+.+ .++++++-+..+.++.+.+..|+ +
T Consensus 114 A~nVTIsGLt-----IdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~-----FGI~L~~~~~~I~~N~I~g~~~~~I 183 (455)
T TIGR03808 114 ADGIGLSGLT-----LDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSGG-----NGIWLETVSGDISGNTITQIAVTAI 183 (455)
T ss_pred CCCeEEEeeE-----EEeCCCcccCCCCEEEEccCCceEEEeeEEEcCCc-----ceEEEEcCcceEecceEeccccceE
Confidence 3456666542 5554321 123445555668999999999998841 23444433355555555555322 2
Q ss_pred Eec-CCceeEEcCEEEccce
Q 043115 167 LDD-TGNHYYSKCIIEGATD 185 (196)
Q Consensus 167 ~~~-~gr~~f~~c~I~G~vD 185 (196)
... .-....++++|+|.-|
T Consensus 184 ~lw~S~g~~V~~N~I~g~RD 203 (455)
T TIGR03808 184 VSFDALGLIVARNTIIGAND 203 (455)
T ss_pred EEeccCCCEEECCEEEccCC
Confidence 222 1223455555555555
No 91
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=89.54 E-value=3.8 Score=35.54 Aligned_cols=41 Identities=17% Similarity=0.184 Sum_probs=30.8
Q ss_pred EeCCcEEEEccEEeecceEEEecCCceeEEcCEEEccceeEecC
Q 043115 147 VSADRAAFYGCRILSYQHTLLDDTGNHYYSKCIIEGATDFISGN 190 (196)
Q Consensus 147 v~~d~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~G~vDfI~G~ 190 (196)
=.+.++.|.||+|.|-|-==|.++= ..+||+.. ++|.-|=+
T Consensus 191 W~SkNltliNC~I~g~QpLCY~~~L--~l~nC~~~-~tdlaFEy 231 (277)
T PF12541_consen 191 WNSKNLTLINCTIEGTQPLCYCDNL--VLENCTMI-DTDLAFEY 231 (277)
T ss_pred EEcCCeEEEEeEEeccCccEeecce--EEeCcEee-cceeeeee
Confidence 3567899999999999976666432 45788888 77877654
No 92
>PLN02218 polygalacturonase ADPG
Probab=89.21 E-value=4.9 Score=37.12 Aligned_cols=64 Identities=9% Similarity=0.110 Sum_probs=39.7
Q ss_pred EEcCcEEEEEEEEEe------cCCC----------------CC-cEEEEEEeCCcEEEEccEEeecceEEEecC-C----
Q 043115 120 VLASHFVARSLTIQN------TYGS----------------YG-KAVALRVSADRAAFYGCRILSYQHTLLDDT-G---- 171 (196)
Q Consensus 120 v~a~~v~~~~lti~N------s~g~----------------~~-~a~al~v~~d~~~~~~c~~~g~QDTl~~~~-g---- 171 (196)
...++++++||+|.+ +.|- .+ +.+++.-...++.++||.+..... +-.+. |
T Consensus 221 ~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHG-isIGS~g~~~~ 299 (431)
T PLN02218 221 EKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHG-ISIGSLGDDNS 299 (431)
T ss_pred EceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCC-EEECcCCCCCC
Confidence 356899999999975 2221 12 456666566789999999975443 33321 1
Q ss_pred -----ceeEEcCEEEccc
Q 043115 172 -----NHYYSKCIIEGAT 184 (196)
Q Consensus 172 -----r~~f~~c~I~G~v 184 (196)
.-+++||++.+..
T Consensus 300 ~~~V~nV~v~n~~~~~t~ 317 (431)
T PLN02218 300 KAFVSGVTVDGAKLSGTD 317 (431)
T ss_pred CceEEEEEEEccEEecCC
Confidence 2356677666643
No 93
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=88.60 E-value=1 Score=33.70 Aligned_cols=63 Identities=19% Similarity=0.136 Sum_probs=36.3
Q ss_pred EEEEEc-CcEEEEEEEEEecCCCCCcEEEEEEeC-CcEEEEccEEeecceEEEec-CCceeEEcCEEEccce
Q 043115 117 TFTVLA-SHFVARSLTIQNTYGSYGKAVALRVSA-DRAAFYGCRILSYQHTLLDD-TGNHYYSKCIIEGATD 185 (196)
Q Consensus 117 ~l~v~a-~~v~~~~lti~Ns~g~~~~a~al~v~~-d~~~~~~c~~~g~QDTl~~~-~gr~~f~~c~I~G~vD 185 (196)
.+.+.. +.+++++-+|.+ . ..++.+.. .+..+++|.|......++.. ..+..+++|.|.+..+
T Consensus 25 gi~~~~~~~~~i~n~~i~~-~-----~~gi~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~i~~~~i~~~~~ 90 (158)
T PF13229_consen 25 GIHVSGSSNITIENCTISN-G-----GYGIYVSGGSNVTISNNTISDNGSGIYVSGSSNITIENNRIENNGD 90 (158)
T ss_dssp CEEE-SSCESEEES-EEES-S-----TTSEEEECCES-EEES-EEES-SEEEECCS-CS-EEES-EEECSSS
T ss_pred EEEEEcCCCeEEECeEEEC-C-----CcEEEEecCCCeEEECeEEEEccceEEEEecCCceecCcEEEcCCC
Confidence 344444 445888888886 1 12344533 67888999998777666554 4566899999998766
No 94
>PLN02793 Probable polygalacturonase
Probab=87.38 E-value=7.6 Score=35.96 Aligned_cols=65 Identities=9% Similarity=0.095 Sum_probs=41.1
Q ss_pred EEcCcEEEEEEEEEe------cCCC----------------CC-cEEEEEEeCCcEEEEccEEeecceEEEecC-C----
Q 043115 120 VLASHFVARSLTIQN------TYGS----------------YG-KAVALRVSADRAAFYGCRILSYQHTLLDDT-G---- 171 (196)
Q Consensus 120 v~a~~v~~~~lti~N------s~g~----------------~~-~a~al~v~~d~~~~~~c~~~g~QDTl~~~~-g---- 171 (196)
...++++++||+|.| +.|- .+ +.+++.-.+.++.++||....... +-.+. |
T Consensus 206 ~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhG-isIGSlg~~~~ 284 (443)
T PLN02793 206 TNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHG-ISIGSLGKSNS 284 (443)
T ss_pred EccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCcc-EEEecccCcCC
Confidence 356789999999975 2220 12 456666677899999999875543 32221 1
Q ss_pred -----ceeEEcCEEEccce
Q 043115 172 -----NHYYSKCIIEGATD 185 (196)
Q Consensus 172 -----r~~f~~c~I~G~vD 185 (196)
.-.++||.+.+...
T Consensus 285 ~~~V~nV~v~n~~~~~t~~ 303 (443)
T PLN02793 285 WSEVRDITVDGAFLSNTDN 303 (443)
T ss_pred CCcEEEEEEEccEEeCCCc
Confidence 13777777776643
No 95
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=86.16 E-value=1.7 Score=38.29 Aligned_cols=39 Identities=13% Similarity=0.305 Sum_probs=25.3
Q ss_pred EEEEeC-CcEEEEccEEeecceEEEecCCc--eeEEcCEEEc
Q 043115 144 ALRVSA-DRAAFYGCRILSYQHTLLDDTGN--HYYSKCIIEG 182 (196)
Q Consensus 144 al~v~~-d~~~~~~c~~~g~QDTl~~~~gr--~~f~~c~I~G 182 (196)
++.+.+ +++.+++|.|...-|.+..+.++ -+++||+..+
T Consensus 144 Gid~~~s~nv~I~n~~i~~gDD~Iaiks~~~ni~v~n~~~~~ 185 (326)
T PF00295_consen 144 GIDIDSSKNVTIENCFIDNGDDCIAIKSGSGNILVENCTCSG 185 (326)
T ss_dssp SEEEESEEEEEEESEEEESSSESEEESSEECEEEEESEEEES
T ss_pred eEEEEeeeEEEEEEeecccccCcccccccccceEEEeEEEec
Confidence 344543 57777888887777777766555 3666666653
No 96
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=85.21 E-value=3 Score=37.34 Aligned_cols=64 Identities=14% Similarity=0.260 Sum_probs=45.6
Q ss_pred EEEEEcCcEEEEEEEEEecCCC-----CCcEEEEEEeCC-cEEEEccEEeecceEEEecCCceeEEcCEEE
Q 043115 117 TFTVLASHFVARSLTIQNTYGS-----YGKAVALRVSAD-RAAFYGCRILSYQHTLLDDTGNHYYSKCIIE 181 (196)
Q Consensus 117 ~l~v~a~~v~~~~lti~Ns~g~-----~~~a~al~v~~d-~~~~~~c~~~g~QDTl~~~~gr~~f~~c~I~ 181 (196)
.|...+|.++++|..+...-.. .+...-+...-+ |..|.||.|+|.-|-++ +.|-..|.+|.|.
T Consensus 215 aL~~dgDka~frnv~llg~QdTlFv~~~~~~~~~~tn~~~R~yftNsyI~GdvDfIf-GsgtaVFd~c~i~ 284 (405)
T COG4677 215 ALATDGDKAIFRNVNLLGNQDTLFVGNSGVQNRLETNRQPRTYFTNSYIEGDVDFIF-GSGTAVFDNCEIQ 284 (405)
T ss_pred EEEecCCceeeeeeeEeeccceEEecCCCCccccccCcchhhheecceecccceEEe-ccceEEeccceEE
Confidence 3556788999999999854321 111111122223 78999999999999996 5889999999997
No 97
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=84.14 E-value=1.2 Score=42.14 Aligned_cols=63 Identities=16% Similarity=0.178 Sum_probs=43.2
Q ss_pred cCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecce----EEEecCCc-eeEEcCEEEccceeEe
Q 043115 122 ASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQH----TLLDDTGN-HYYSKCIIEGATDFIS 188 (196)
Q Consensus 122 a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QD----Tl~~~~gr-~~f~~c~I~G~vDfI~ 188 (196)
..|+.++|++|.|+.- +. -..+..++..|.|..+....+ .+-.+..+ ...++|+|.=.-|=|+
T Consensus 246 c~NV~~~g~~i~ns~~---~~-~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI~~~~fdtgDD~I~ 313 (542)
T COG5434 246 CRNVLLEGLNIKNSPL---WT-VHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEGCRFDTGDDCIA 313 (542)
T ss_pred cceEEEeeeEecCCCc---EE-EeeecccCceecceEEECCCCCCCCccccccceeEEEeccEEecCCceEE
Confidence 4688888888888752 11 123367888888888887655 66444444 4889999987666654
No 98
>PLN02155 polygalacturonase
Probab=81.83 E-value=10 Score=34.58 Aligned_cols=62 Identities=15% Similarity=0.103 Sum_probs=37.8
Q ss_pred EcCcEEEEEEEEEe--c----CCC----------------CC-cEEEEEEeCCcEEEEccEEeecceEEEecC-----C-
Q 043115 121 LASHFVARSLTIQN--T----YGS----------------YG-KAVALRVSADRAAFYGCRILSYQHTLLDDT-----G- 171 (196)
Q Consensus 121 ~a~~v~~~~lti~N--s----~g~----------------~~-~a~al~v~~d~~~~~~c~~~g~QDTl~~~~-----g- 171 (196)
..++++++|++|.| . .|- .+ +.+|+.-...++.+++|...+... +-.+. .
T Consensus 175 ~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhG-isIGS~g~~~~~ 253 (394)
T PLN02155 175 GCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHG-VSIGSLAKELNE 253 (394)
T ss_pred CeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCce-EEeccccccCCC
Confidence 45899999999976 1 121 11 345554445789999988875433 33221 1
Q ss_pred ----ceeEEcCEEEcc
Q 043115 172 ----NHYYSKCIIEGA 183 (196)
Q Consensus 172 ----r~~f~~c~I~G~ 183 (196)
.-+++||.+.+.
T Consensus 254 ~~V~nV~v~n~~~~~t 269 (394)
T PLN02155 254 DGVENVTVSSSVFTGS 269 (394)
T ss_pred CcEEEEEEEeeEEeCC
Confidence 236777777764
No 99
>PLN03003 Probable polygalacturonase At3g15720
Probab=79.62 E-value=12 Score=35.00 Aligned_cols=63 Identities=17% Similarity=0.201 Sum_probs=39.6
Q ss_pred EcCcEEEEEEEEEec--C----CC----------------CC-cEEEEEEeCCcEEEEccEEeecceEEEec-CC-----
Q 043115 121 LASHFVARSLTIQNT--Y----GS----------------YG-KAVALRVSADRAAFYGCRILSYQHTLLDD-TG----- 171 (196)
Q Consensus 121 ~a~~v~~~~lti~Ns--~----g~----------------~~-~a~al~v~~d~~~~~~c~~~g~QDTl~~~-~g----- 171 (196)
..++++++||+|.+. . |- .+ +.+++.-...++.++||...+... +-.+ .|
T Consensus 168 ~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GHG-ISIGSlg~~g~~ 246 (456)
T PLN03003 168 ECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHG-ISIGSLGKDGET 246 (456)
T ss_pred ccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCCC-eEEeeccCCCCc
Confidence 468899999999862 1 10 11 355555556789999999875443 3221 11
Q ss_pred ----ceeEEcCEEEccc
Q 043115 172 ----NHYYSKCIIEGAT 184 (196)
Q Consensus 172 ----r~~f~~c~I~G~v 184 (196)
.-+++||.+.+..
T Consensus 247 ~~V~NV~v~n~~~~~T~ 263 (456)
T PLN03003 247 ATVENVCVQNCNFRGTM 263 (456)
T ss_pred ceEEEEEEEeeEEECCC
Confidence 2368888888753
No 100
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=78.49 E-value=5 Score=29.90 Aligned_cols=61 Identities=15% Similarity=0.084 Sum_probs=37.5
Q ss_pred EEEEc-CcEEEEEEEEEecCCCCCcEEEEEE-eCCcEEEEccEEeecce-EEEecC--CceeEEcCEEEccc
Q 043115 118 FTVLA-SHFVARSLTIQNTYGSYGKAVALRV-SADRAAFYGCRILSYQH-TLLDDT--GNHYYSKCIIEGAT 184 (196)
Q Consensus 118 l~v~a-~~v~~~~lti~Ns~g~~~~a~al~v-~~d~~~~~~c~~~g~QD-Tl~~~~--gr~~f~~c~I~G~v 184 (196)
+.+.. .++.+++.+|.+.. .++.+ .+.+..+++|+|....+ .++... ....+++|++..+-
T Consensus 48 i~~~~~~~~~i~~~~~~~~~------~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~~~~~~ 113 (158)
T PF13229_consen 48 IYVSGGSNVTISNNTISDNG------SGIYVSGSSNITIENNRIENNGDYGIYISNSSSNVTIENNTIHNNG 113 (158)
T ss_dssp EEEECCES-EEES-EEES-S------EEEECCS-CS-EEES-EEECSSS-SCE-TCEECS-EEES-EEECCT
T ss_pred EEEecCCCeEEECeEEEEcc------ceEEEEecCCceecCcEEEcCCCccEEEeccCCCEEEEeEEEEeCc
Confidence 44443 67888888888553 34444 67899999999998866 777753 45689999998755
No 101
>PLN03010 polygalacturonase
Probab=76.71 E-value=29 Score=31.88 Aligned_cols=62 Identities=10% Similarity=0.127 Sum_probs=34.5
Q ss_pred EcCcEEEEEEEEEecC------CC----------------CC-cEEEEEEeCCcEEEEccEEeecceEEEec----CC--
Q 043115 121 LASHFVARSLTIQNTY------GS----------------YG-KAVALRVSADRAAFYGCRILSYQHTLLDD----TG-- 171 (196)
Q Consensus 121 ~a~~v~~~~lti~Ns~------g~----------------~~-~a~al~v~~d~~~~~~c~~~g~QDTl~~~----~g-- 171 (196)
..++++++||+|.+.. |- .+ +.+|+.-.++...++++...+... +-.+ .+
T Consensus 187 ~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHG-isIGS~g~~~~~ 265 (409)
T PLN03010 187 TCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHG-ISVGSLGADGAN 265 (409)
T ss_pred ccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCC-EEEccCCCCCCC
Confidence 4577888888887632 10 11 345555555667777666654332 3221 11
Q ss_pred ----ceeEEcCEEEcc
Q 043115 172 ----NHYYSKCIIEGA 183 (196)
Q Consensus 172 ----r~~f~~c~I~G~ 183 (196)
.-+|+||++.+.
T Consensus 266 ~~V~nV~v~n~~i~~t 281 (409)
T PLN03010 266 AKVSDVHVTHCTFNQT 281 (409)
T ss_pred CeeEEEEEEeeEEeCC
Confidence 126778877765
No 102
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=72.63 E-value=11 Score=22.77 Aligned_cols=36 Identities=8% Similarity=-0.016 Sum_probs=26.8
Q ss_pred eCCcEEEEccEEeecceEEEecC-CceeEEcCEEEcc
Q 043115 148 SADRAAFYGCRILSYQHTLLDDT-GNHYYSKCIIEGA 183 (196)
Q Consensus 148 ~~d~~~~~~c~~~g~QDTl~~~~-gr~~f~~c~I~G~ 183 (196)
.+....++++.+....|.++... .+..++++.+.++
T Consensus 6 ~s~~~~i~~N~i~~~~~GI~~~~s~~n~i~~N~~~~n 42 (44)
T TIGR03804 6 SSSNNTLENNTASNNSYGIYLTDSSNNTLSNNTASSN 42 (44)
T ss_pred ecCCCEEECcEEeCCCCEEEEEeCCCCEeECCEEEcC
Confidence 45667799999999999888754 4556777776654
No 103
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=68.91 E-value=10 Score=33.31 Aligned_cols=66 Identities=17% Similarity=0.242 Sum_probs=47.3
Q ss_pred EEE-EcCcEEEEEEEEEecCCCCCcEEEEEE-eCCcEEEEccEEeec-----ceEEEecCC-ceeEEcCEEEccceeEe
Q 043115 118 FTV-LASHFVARSLTIQNTYGSYGKAVALRV-SADRAAFYGCRILSY-----QHTLLDDTG-NHYYSKCIIEGATDFIS 188 (196)
Q Consensus 118 l~v-~a~~v~~~~lti~Ns~g~~~~a~al~v-~~d~~~~~~c~~~g~-----QDTl~~~~g-r~~f~~c~I~G~vDfI~ 188 (196)
+.+ ..++++++||+++|+. .-.+.+ ..+++.+++..+.+. -|.+-.... +..++||.|....|-|.
T Consensus 95 i~~~~~~~~~i~~i~~~nsp-----~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~gDD~Ia 168 (326)
T PF00295_consen 95 IRFNNCKNVTIEGITIRNSP-----FWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCFIDNGDDCIA 168 (326)
T ss_dssp EEEEEEEEEEEESEEEES-S-----SESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEEEESSSESEE
T ss_pred eeeeeecceEEEeeEecCCC-----eeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEeecccccCccc
Confidence 444 4578999999999874 223444 578899999999854 477766554 44999999998888774
No 104
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=63.79 E-value=37 Score=25.27 Aligned_cols=43 Identities=16% Similarity=0.293 Sum_probs=22.4
Q ss_pred EEEEcCCCCCCcchHHHHHh-hCCCCCCceEEEEEc-----CCeEeeeEEE
Q 043115 41 LIRVEKYGRGDFRTIQGAID-SVPDNNSELVFISVA-----PGIYREKIIV 85 (196)
Q Consensus 41 ~i~V~~~g~g~y~tIq~AI~-aa~~g~~~~~~I~I~-----~G~Y~E~v~I 85 (196)
+|+|.. .+.-..++++|. .|-+.....|+|.-. +|.++..-.|
T Consensus 53 tVSvs~--~gsp~d~~~~La~KAda~GA~yYrIi~~~e~~~~~~~~atA~i 101 (104)
T PRK14864 53 TVSALV--RGSPDDAEREIQAKANAAGADYYVIVMVDETVVPGQWYSQAIL 101 (104)
T ss_pred EEEEec--CCCHHHHHHHHHHHHHHcCCCEEEEEEccccCCCCeEEEEEEE
Confidence 455542 344466777775 233322344555544 4666665555
No 105
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=60.09 E-value=1.1e+02 Score=27.36 Aligned_cols=68 Identities=21% Similarity=0.411 Sum_probs=43.6
Q ss_pred hCCCCCCceEEEEEcCCeEeee----EEEcCCCCceEecCC----CCCCeE------EEeCCCCCCCCCeEEEEEcCcEE
Q 043115 61 SVPDNNSELVFISVAPGIYREK----IIVPANKPFITISGT----KASHTK------ITWSDGGSILDSATFTVLASHFV 126 (196)
Q Consensus 61 aa~~g~~~~~~I~I~~G~Y~E~----v~I~~~k~~ItL~G~----~~~~v~------I~~~~~~~~~~~~~l~v~a~~v~ 126 (196)
+..++. ++.|.+|---|+ +.||..|. +.+.|. |+..-+ +.+..++ ....-++.|++++.+
T Consensus 52 af~e~q----tvvvpagl~cenint~ifip~gkt-l~v~g~l~gngrgrfvlqdg~qv~ge~~g-~~hnitldvrgsdc~ 125 (464)
T PRK10123 52 AFSEGQ----TVVVPAGLVCDNINTGIFIPPGKT-LHILGSLRGNGRGRFVLQDGSQVTGEEGG-SMHNITLDVRGSDCT 125 (464)
T ss_pred HhccCc----EEEecCccEecccccceEeCCCCe-EEEEEEeecCCceeEEEecCCEeecCCCc-eeeeEEEeeccCceE
Confidence 334565 888999987775 56776664 666554 433333 3333322 234567889999999
Q ss_pred EEEEEEEe
Q 043115 127 ARSLTIQN 134 (196)
Q Consensus 127 ~~~lti~N 134 (196)
+++|.+..
T Consensus 126 ikgiamsg 133 (464)
T PRK10123 126 IKGLAMSG 133 (464)
T ss_pred Eeeeeecc
Confidence 99998874
No 106
>COG0848 ExbD Biopolymer transport protein [Intracellular trafficking and secretion]
Probab=55.40 E-value=37 Score=26.33 Aligned_cols=56 Identities=13% Similarity=0.302 Sum_probs=30.8
Q ss_pred cCCCCCCCC-CCCCcEEEEEcCCCC-------CCcchHHHHHhhCCCCCCc-eEEEEEcCCe-Eee
Q 043115 26 CGSTATIPK-DFSAAVLIRVEKYGR-------GDFRTIQGAIDSVPDNNSE-LVFISVAPGI-YRE 81 (196)
Q Consensus 26 ~~~~~~~~~-~~~~a~~i~V~~~g~-------g~y~tIq~AI~aa~~g~~~-~~~I~I~~G~-Y~E 81 (196)
.++.++++. .++..+.++|+.+|. -+...++++|.+...++.+ ++.|.-...+ |.+
T Consensus 47 LP~a~~~~~~~~~~~i~v~i~~~G~~~l~~~~v~~~~l~~~l~~~~~~~~~~~v~i~aD~~v~y~~ 112 (137)
T COG0848 47 LPKASAKPAPQDKKPIIVSVDADGQIYLNDKPVSLEELEAALAALAKGKKNPRVVIRADKNVKYGT 112 (137)
T ss_pred CCCCcCCCcCCCCCCEEEEEeCCCcEEECCccccHHHHHHHHHHHhcCCCCceEEEEeCCCCCHHH
Confidence 333333443 556778889988763 2355788888765543322 3444444333 444
No 107
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=50.69 E-value=1.4e+02 Score=24.40 Aligned_cols=57 Identities=12% Similarity=0.022 Sum_probs=42.4
Q ss_pred EcCcEEEEEEEEEecCCCCCcEEEEEE-eCCcEEEEccEEeecceEEEecC-CceeEEcCEEEcc
Q 043115 121 LASHFVARSLTIQNTYGSYGKAVALRV-SADRAAFYGCRILSYQHTLLDDT-GNHYYSKCIIEGA 183 (196)
Q Consensus 121 ~a~~v~~~~lti~Ns~g~~~~a~al~v-~~d~~~~~~c~~~g~QDTl~~~~-gr~~f~~c~I~G~ 183 (196)
.+.+.++++=+|.+... ++.+ .++...+.++.|......++... .+..++++.|.++
T Consensus 86 ~s~~~~I~~N~i~~n~~------GI~l~~s~~~~I~~N~i~~~~~GI~l~~s~~n~I~~N~i~~n 144 (236)
T PF05048_consen 86 GSSNNTISNNTISNNGY------GIYLYGSSNNTISNNTISNNGYGIYLSSSSNNTITGNTISNN 144 (236)
T ss_pred cCCCcEEECCEecCCCc------eEEEeeCCceEEECcEEeCCCEEEEEEeCCCCEEECeEEeCC
Confidence 34445888877775542 5555 46778999999998888888754 5778889999888
No 108
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=48.90 E-value=1.6e+02 Score=24.72 Aligned_cols=52 Identities=6% Similarity=0.103 Sum_probs=29.4
Q ss_pred EEEEEcCcEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCCc
Q 043115 117 TFTVLASHFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTGN 172 (196)
Q Consensus 117 ~l~v~a~~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~gr 172 (196)
-++..+ +.+|+|+-+++-. +.|+.+.-.+....+.++...+..|-++-++|+
T Consensus 77 GIHC~G-~Ctl~NVwwedVc---EDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng~ 128 (215)
T PF03211_consen 77 GIHCKG-SCTLENVWWEDVC---EDAATFKGDGGTVTIIGGGARNASDKVFQHNGG 128 (215)
T ss_dssp -EEEES-CEEEEEEEESS-S---SESEEEESSEEEEEEESTEEEEEEEEEEEE-SS
T ss_pred ceEEcC-CEEEEEEEecccc---eeeeEEcCCCceEEEeCCcccCCCccEEEecCc
Confidence 355555 6777777666432 345544444446677777777777777655544
No 109
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=48.04 E-value=6.1 Score=28.89 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=12.1
Q ss_pred ccchhh--hhhHhhhheeeecccc
Q 043115 5 SQNVSI--LVVATTIVFASITATC 26 (196)
Q Consensus 5 ~~~~~~--~~~~~~~~~~~~~~~~ 26 (196)
|+.+++ ++|+++|+++|-++++
T Consensus 3 SK~~llL~l~LA~lLlisSevaa~ 26 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLLISSEVAAR 26 (95)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhH
Confidence 444433 3455677777755544
No 110
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=45.46 E-value=2.1e+02 Score=25.01 Aligned_cols=73 Identities=18% Similarity=0.252 Sum_probs=44.3
Q ss_pred CCeEe----eeEEEcCCCCceEecCC----CCCCeEEEeCCCC---------------CCCCCeEEEEEcCcEEEEEEEE
Q 043115 76 PGIYR----EKIIVPANKPFITISGT----KASHTKITWSDGG---------------SILDSATFTVLASHFVARSLTI 132 (196)
Q Consensus 76 ~G~Y~----E~v~I~~~k~~ItL~G~----~~~~v~I~~~~~~---------------~~~~~~~l~v~a~~v~~~~lti 132 (196)
.|.|- |++.|+ ++.+.|. +...+.|....-. +.-.+.-|...+.|+++.|=+|
T Consensus 128 ~gdYf~m~s~ni~id----~l~~~GnY~Fq~~kNvei~ns~l~sKDAFWn~eNVtVyDS~i~GEYLgW~SkNltliNC~I 203 (277)
T PF12541_consen 128 NGDYFFMNSENIYID----NLVLDGNYSFQYCKNVEIHNSKLDSKDAFWNCENVTVYDSVINGEYLGWNSKNLTLINCTI 203 (277)
T ss_pred eceEeeeeccceEEe----ceEEeCCEEeeceeeEEEEccEEecccccccCCceEEEcceEeeeEEEEEcCCeEEEEeEE
Confidence 67776 678884 3777775 4455665543210 0122334445566777777777
Q ss_pred EecCCCCCcEEEEEEeCCcEEEEccEEe
Q 043115 133 QNTYGSYGKAVALRVSADRAAFYGCRIL 160 (196)
Q Consensus 133 ~Ns~g~~~~a~al~v~~d~~~~~~c~~~ 160 (196)
+.+-+ .-..+++.++||++.
T Consensus 204 ~g~Qp--------LCY~~~L~l~nC~~~ 223 (277)
T PF12541_consen 204 EGTQP--------LCYCDNLVLENCTMI 223 (277)
T ss_pred eccCc--------cEeecceEEeCcEee
Confidence 64322 345688999999998
No 111
>PRK09752 adhesin; Provisional
Probab=43.95 E-value=3.7e+02 Score=28.43 Aligned_cols=19 Identities=16% Similarity=0.324 Sum_probs=8.9
Q ss_pred EEecCCceeEEcCEEEccc
Q 043115 166 LLDDTGNHYYSKCIIEGAT 184 (196)
Q Consensus 166 l~~~~gr~~f~~c~I~G~v 184 (196)
||...+.-.+.+|...+|.
T Consensus 175 IYs~ng~vtIsnS~F~nN~ 193 (1250)
T PRK09752 175 IYTINNDVYLSDVIFDNNQ 193 (1250)
T ss_pred EEEccCcEEEEeeEEeCCc
Confidence 4443444444555555444
No 112
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=38.92 E-value=92 Score=27.83 Aligned_cols=41 Identities=12% Similarity=0.252 Sum_probs=31.0
Q ss_pred EEEEEEe-CCcEEEEccEEeecc------eEEEe-cCCce-eEEcCEEEc
Q 043115 142 AVALRVS-ADRAAFYGCRILSYQ------HTLLD-DTGNH-YYSKCIIEG 182 (196)
Q Consensus 142 a~al~v~-~d~~~~~~c~~~g~Q------DTl~~-~~gr~-~f~~c~I~G 182 (196)
...+.+. ++++.|+|..|++.. |.+-. +.+++ |..+|+..+
T Consensus 116 g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~ 165 (345)
T COG3866 116 GGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSG 165 (345)
T ss_pred eceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEecc
Confidence 3456665 899999999999875 66654 56666 888888765
No 113
>PRK10718 RpoE-regulated lipoprotein; Provisional
Probab=37.10 E-value=1.4e+02 Score=24.62 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=30.3
Q ss_pred hhhhhHhhhheeeecc-------ccCCCCCCCCCCCCcEEEEEcCCCCCCcch----HHHHHhhCCCCC
Q 043115 9 SILVVATTIVFASITA-------TCGSTATIPKDFSAAVLIRVEKYGRGDFRT----IQGAIDSVPDNN 66 (196)
Q Consensus 9 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~a~~i~V~~~g~g~y~t----Iq~AI~aa~~g~ 66 (196)
.+++|++.|+++.|.. +.+|.| |=.++ +.|..+|-|.-+. -|+||+++-+++
T Consensus 5 r~~ll~~~l~LsGC~~~s~~~~S~lnP~N--WFg~s----~~vse~GVG~Ita~Tp~~~~aI~~~L~g~ 67 (191)
T PRK10718 5 RLLLLALPLLLTGCSTLSSFSWSALSPWN--WFGSS----LEVSEQGVGGITASTPLQEQAIADALDGD 67 (191)
T ss_pred hhHHHHHHHHHhhccCCCCccccccCccc--ccCCC----ceeccCccccccccCccCHHHHHhhcCCC
Confidence 4567777778887763 444444 44332 4567666554321 467777665554
No 114
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=36.56 E-value=1e+02 Score=24.32 Aligned_cols=14 Identities=14% Similarity=0.337 Sum_probs=8.7
Q ss_pred cCcEEEEEEEEEec
Q 043115 122 ASHFVARSLTIQNT 135 (196)
Q Consensus 122 a~~v~~~~lti~Ns 135 (196)
+.++.++|++++|.
T Consensus 120 ~~~~~i~nv~~~~~ 133 (225)
T PF12708_consen 120 SQNVSISNVRIENS 133 (225)
T ss_dssp EEEEEEEEEEEES-
T ss_pred CCeEEEEeEEEEcc
Confidence 35667777777765
No 115
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=35.38 E-value=75 Score=29.46 Aligned_cols=56 Identities=11% Similarity=0.090 Sum_probs=27.2
Q ss_pred cEEEEEEEEEecCCCCCcEEEEEEeCCcEEEEccEEeecceEEEecCC-ceeEEcCEEEc
Q 043115 124 HFVARSLTIQNTYGSYGKAVALRVSADRAAFYGCRILSYQHTLLDDTG-NHYYSKCIIEG 182 (196)
Q Consensus 124 ~v~~~~lti~Ns~g~~~~a~al~v~~d~~~~~~c~~~g~QDTl~~~~g-r~~f~~c~I~G 182 (196)
+.++++=-|++.. +....|.+.+.+..+++..|+-.|.+|-..+| +..+++.++.|
T Consensus 200 ~t~Ve~NlFe~cd---GE~EIISvKS~~N~ir~Ntf~es~G~ltlRHGn~n~V~gN~FiG 256 (425)
T PF14592_consen 200 NTTVENNLFERCD---GEVEIISVKSSDNTIRNNTFRESQGSLTLRHGNRNTVEGNVFIG 256 (425)
T ss_dssp --EEES-EEEEE----SSSEEEEEESBT-EEES-EEES-SSEEEEEE-SS-EEES-EEEE
T ss_pred ceeeecchhhhcC---CceeEEEeecCCceEeccEEEeccceEEEecCCCceEeccEEec
Confidence 3444444444443 34666777777777777777777777755544 23444444443
No 116
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=34.43 E-value=17 Score=32.51 Aligned_cols=14 Identities=36% Similarity=0.802 Sum_probs=10.7
Q ss_pred EEEEcC-CeEeeeEE
Q 043115 71 FISVAP-GIYREKII 84 (196)
Q Consensus 71 ~I~I~~-G~Y~E~v~ 84 (196)
.+.+.| |+|.|.+.
T Consensus 54 ~Vlttpwg~ynes~~ 68 (337)
T COG2247 54 PVLTTPWGIYNESVL 68 (337)
T ss_pred eeEecCcccccHHHH
Confidence 455999 99998643
No 117
>COG3521 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.10 E-value=72 Score=25.58 Aligned_cols=52 Identities=8% Similarity=0.134 Sum_probs=25.9
Q ss_pred hhhhhhHhhhheeeeccccCCCCCCCCCCCCcEEEEEcCCCCCCcchHHHHHhhCCCCCCceEEEEE
Q 043115 8 VSILVVATTIVFASITATCGSTATIPKDFSAAVLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISV 74 (196)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~V~~~g~g~y~tIq~AI~aa~~g~~~~~~I~I 74 (196)
+-+..++++++.+.| ++. +|.-|+.-+++.+..+ +.+|--+.|...|.+|.|
T Consensus 6 ~a~~~l~al~~~sgC----sss--~~~~pp~~l~l~l~a~---------~~~Np~~~g~a~Pl~Vrl 57 (159)
T COG3521 6 KAVLALFALLVLSGC----SSS--KPLLPPSRLDLTLTAA---------PDLNPNANGEAAPLEVRL 57 (159)
T ss_pred HHHHHHHHHHHhhhh----ccC--CCCCCCcEEEEEEEec---------CCcCCCCCCCccceEEEE
Confidence 345556666666555 222 2223455566666543 334444455555666655
No 118
>COG4771 FepA Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism]
Probab=30.33 E-value=1e+02 Score=30.19 Aligned_cols=80 Identities=19% Similarity=0.225 Sum_probs=44.5
Q ss_pred CcccccchhhhhhHhhhheeeeccccCCCCCC-------------CCCCCCc-EEEEEcCC-CCCCcchHHHHHhhCCC-
Q 043115 1 MKNYSQNVSILVVATTIVFASITATCGSTATI-------------PKDFSAA-VLIRVEKY-GRGDFRTIQGAIDSVPD- 64 (196)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~a-~~i~V~~~-g~g~y~tIq~AI~aa~~- 64 (196)
|....+-+.+.++++.+.+.+++++..+..+. -.--+.| +.++-..+ -...|+.+++||..+|.
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~vVtas~~eQ~lk~APaSVSvIT~edlqk~p~rDl~ealr~vpGV 80 (699)
T COG4771 1 MNRKNPPVRLALLLSAVGLASPVAAAEDDGTAEDTMVVTASGAEQNLKDAPASVSVITAEDLQKRPYRDLAEALRTVPGV 80 (699)
T ss_pred CCccccceehhhhhhhHhccchhhhhCCcCCccceeEEEehhhhhHhhcCCceEEEEeHHHhhhcchhhHHHHHhcCCce
Confidence 66666777788888887777753332222111 0000122 22211211 23569999999998873
Q ss_pred ------CCCceEEEEEcCCeEe
Q 043115 65 ------NNSELVFISVAPGIYR 80 (196)
Q Consensus 65 ------g~~~~~~I~I~~G~Y~ 80 (196)
|++..+.|+=.++.|.
T Consensus 81 ~ltg~~G~nr~IsIRGM~~~yT 102 (699)
T COG4771 81 NLTGNRGNNRQISIRGMGPEYT 102 (699)
T ss_pred EEeccCCCccceEEeccCCcce
Confidence 3445566666777776
No 119
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=29.39 E-value=92 Score=28.39 Aligned_cols=45 Identities=11% Similarity=0.254 Sum_probs=26.5
Q ss_pred CCCcEEEEEcCCC--CCCcchHHH-----HHhhCCCCCCceEEEEEcCCeEe
Q 043115 36 FSAAVLIRVEKYG--RGDFRTIQG-----AIDSVPDNNSELVFISVAPGIYR 80 (196)
Q Consensus 36 ~~~a~~i~V~~~g--~g~y~tIq~-----AI~aa~~g~~~~~~I~I~~G~Y~ 80 (196)
|++..++.|-..+ ..+|..+.. -...+.+|.+..++..++||+|.
T Consensus 49 pAG~~~f~V~N~~~~~~Efe~~~~~~vv~e~EnIaPG~s~~l~~~L~pGtY~ 100 (375)
T PRK10378 49 NAGKTQFIIQNHSQKALEWEILKGVMVVEERENIAPGFSQKMTANLQPGEYD 100 (375)
T ss_pred CCCCEEEEEEeCCCCcceEEeeccccccccccccCCCCceEEEEecCCceEE
Confidence 3445666664332 244555431 22455667666677778899998
No 120
>COG3056 Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=29.37 E-value=74 Score=26.34 Aligned_cols=17 Identities=18% Similarity=0.260 Sum_probs=13.7
Q ss_pred hhhhhhHhhhheeeecc
Q 043115 8 VSILVVATTIVFASITA 24 (196)
Q Consensus 8 ~~~~~~~~~~~~~~~~~ 24 (196)
.++++|+++++|+.|.+
T Consensus 17 k~L~~laa~~lLagC~a 33 (204)
T COG3056 17 KILFPLAAIFLLAGCAA 33 (204)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 47788999999988763
No 121
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=28.54 E-value=65 Score=30.29 Aligned_cols=13 Identities=38% Similarity=0.690 Sum_probs=11.1
Q ss_pred ceeEecCcceeeC
Q 043115 184 TDFISGNANSLFE 196 (196)
Q Consensus 184 vDfI~G~g~a~fe 196 (196)
-+||||.|...||
T Consensus 305 gvyI~~~~rG~fe 317 (625)
T KOG1777|consen 305 GVYIFGDGRGLFE 317 (625)
T ss_pred eEEEEecccccee
Confidence 5899999988876
No 122
>TIGR01965 VCBS_repeat VCBS repeat. This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.
Probab=27.77 E-value=1.7e+02 Score=21.48 Aligned_cols=58 Identities=17% Similarity=0.332 Sum_probs=38.0
Q ss_pred EEEEcCCCCCCcc--hHHHHHhhCCCCCC--ceEEEEEcCCeEeeeEEEcCCCCceEecCCCCCCeEEEeC
Q 043115 41 LIRVEKYGRGDFR--TIQGAIDSVPDNNS--ELVFISVAPGIYREKIIVPANKPFITISGTKASHTKITWS 107 (196)
Q Consensus 41 ~i~V~~~g~g~y~--tIq~AI~aa~~g~~--~~~~I~I~~G~Y~E~v~I~~~k~~ItL~G~~~~~v~I~~~ 107 (196)
.+++.++|.=.|. .-..|++++..|++ ..+++.+..|+ .+.|. |+|.|.. +.++|.+.
T Consensus 28 tlti~~~G~wtYtl~n~~~avq~L~~Ge~~tdsFtvtv~DGt-t~~vt-------ItI~GtN-Dapvi~~~ 89 (99)
T TIGR01965 28 TFSIDADGQWTYQADNSQTAVQALKAGETLTDTFTVTSADGT-SQTVT-------ITITGAN-DAAVIGGA 89 (99)
T ss_pred EEEECCCCcEEEEeCCCcHHHHhhcCCCEEEEEEEEEEeCCC-eEEEE-------EEEEccC-CCCEEecc
Confidence 5677777543343 22348898888864 57999999997 33333 6888885 45666554
No 123
>TIGR03352 VI_chp_3 type VI secretion lipoprotein, VC_A0113 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=27.28 E-value=76 Score=24.75 Aligned_cols=9 Identities=33% Similarity=0.279 Sum_probs=5.9
Q ss_pred EEEEEcCCe
Q 043115 70 VFISVAPGI 78 (196)
Q Consensus 70 ~~I~I~~G~ 78 (196)
..+.|.||.
T Consensus 86 ~e~~l~PG~ 94 (146)
T TIGR03352 86 DEIILLPGE 94 (146)
T ss_pred ceEEECCCC
Confidence 456677776
No 124
>TIGR00247 conserved hypothetical protein, YceG family. This uncharacterized protein family, found in three of four microbial genomes, virtually always once per genome, includes YceG from Escherichia coli. This protein is encoded next to PabC, 4-amino-4-deoxychorismate lyase, in E. coli and numerous other proteobacteria, but that proximity is not conserved in other lineages. Numerous members of this family have been misannotated as aminodeoxychorismate lyase, apparently because of promiximty to PabC.
Probab=27.08 E-value=25 Score=31.23 Aligned_cols=24 Identities=13% Similarity=0.062 Sum_probs=14.6
Q ss_pred CCCcEEEEEcCCCCCCcchHHHHHhh
Q 043115 36 FSAAVLIRVEKYGRGDFRTIQGAIDS 61 (196)
Q Consensus 36 ~~~a~~i~V~~~g~g~y~tIq~AI~a 61 (196)
+...+.+.|.+. ...+.|.+.|..
T Consensus 36 ~~~~v~v~Ip~G--~s~~~Ia~~L~~ 59 (342)
T TIGR00247 36 NKLVYEFNIEKG--TGVSKIAKELKK 59 (342)
T ss_pred CCccEEEEECCC--CCHHHHHHHHHH
Confidence 344567777764 345677777654
No 125
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=26.54 E-value=50 Score=29.96 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=17.6
Q ss_pred eEEEEEcCCeEeeeEEEcCCCCceEe
Q 043115 69 LVFISVAPGIYREKIIVPANKPFITI 94 (196)
Q Consensus 69 ~~~I~I~~G~Y~E~v~I~~~k~~ItL 94 (196)
|+.=.=..|+|.|+|.||..+. +++
T Consensus 339 p~~~~~~~g~y~~~~~vp~~~~-l~~ 363 (366)
T PF10460_consen 339 PVVRQDVSGTYSETVRVPAGTT-LSV 363 (366)
T ss_pred eeEecCCCceeeeeEecCCCCe-EEE
Confidence 3333446899999999997653 554
No 126
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=26.40 E-value=94 Score=15.28 Aligned_cols=13 Identities=8% Similarity=-0.049 Sum_probs=6.8
Q ss_pred cEEEEccEEeecc
Q 043115 151 RAAFYGCRILSYQ 163 (196)
Q Consensus 151 ~~~~~~c~~~g~Q 163 (196)
+..+++|.|.+..
T Consensus 3 ~~~i~~n~i~~~~ 15 (26)
T smart00710 3 NVTIENNTIRNNG 15 (26)
T ss_pred CEEEECCEEEeCC
Confidence 3455555555443
No 127
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=25.64 E-value=2.5e+02 Score=20.70 Aligned_cols=11 Identities=18% Similarity=0.250 Sum_probs=6.6
Q ss_pred CcEEEEEcCCC
Q 043115 38 AAVLIRVEKYG 48 (196)
Q Consensus 38 ~a~~i~V~~~g 48 (196)
...++.|+++|
T Consensus 50 ~~~~v~i~~~g 60 (121)
T TIGR02804 50 LKLLITITADN 60 (121)
T ss_pred CcEEEEEECCC
Confidence 34566676664
No 128
>TIGR03656 IsdC heme uptake protein IsdC. Isd proteins are iron-regulated surface proteins found in Bacillus, Staphylococcus and Listeria species and are responsible for heme scavenging from hemoproteins. The IsdC protein consists of an N-terminal hydrophobic signal sequence, a central NEAT (NEAr Transporter, pfam05031) domain which confers the ability to bind heme and a C-terminal SrtB processing signal which targets the protein to the cell wall. IsdC is believed to make a direct contact with, and transfer heme to, the heme-binding component (IsdE) of an ABC transporter in the cytoplasmic membrane, and to receive heme from other NEAT-containing heme-binding proteins also localized in the cell wall.
Probab=24.90 E-value=3.7e+02 Score=22.66 Aligned_cols=45 Identities=13% Similarity=-0.002 Sum_probs=26.7
Q ss_pred CCCcEEEEEcCCCCCCcchHHHHHhhCCCCCCceEEEEEcCCeEeeeEEEcC
Q 043115 36 FSAAVLIRVEKYGRGDFRTIQGAIDSVPDNNSELVFISVAPGIYREKIIVPA 87 (196)
Q Consensus 36 ~~~a~~i~V~~~g~g~y~tIq~AI~aa~~g~~~~~~I~I~~G~Y~E~v~I~~ 87 (196)
....+.+.|=++++.+-+-..+.+ . .|.++.|+.|.|.=.+.+..
T Consensus 32 GtYsV~fkVlK~~tde~Smmn~Y~---~----kPAkv~VknGK~~Vt~Tl~~ 76 (217)
T TIGR03656 32 GTYTINYTVYKADNDSASMANDYF---E----KPAKLIVKNGKMTVQITVNH 76 (217)
T ss_pred ceEEEEEEEEeCCCCchhhHHhhc---c----CCcEEEEECCEEEEEEEEec
Confidence 345566666666553322222222 1 23488899999998888854
No 129
>smart00656 Amb_all Amb_all domain.
Probab=23.30 E-value=3.1e+02 Score=22.10 Aligned_cols=39 Identities=10% Similarity=0.149 Sum_probs=28.7
Q ss_pred EEEe-CCcEEEEccEEeec-------ceEEEecCCc-eeEEcCEEEcc
Q 043115 145 LRVS-ADRAAFYGCRILSY-------QHTLLDDTGN-HYYSKCIIEGA 183 (196)
Q Consensus 145 l~v~-~d~~~~~~c~~~g~-------QDTl~~~~gr-~~f~~c~I~G~ 183 (196)
+.+. .+++.++|.+|+.. -|.+.....+ .++.+|.+...
T Consensus 34 l~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~ 81 (190)
T smart00656 34 LTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGC 81 (190)
T ss_pred EEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcc
Confidence 4443 56889999999853 3788776554 49999999976
No 130
>PF02472 ExbD: Biopolymer transport protein ExbD/TolR; InterPro: IPR003400 This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria []. The family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2JWL_A 2JWK_A 2PFU_A.
Probab=22.10 E-value=64 Score=23.68 Aligned_cols=12 Identities=0% Similarity=0.318 Sum_probs=6.0
Q ss_pred cchHHHHHhhCC
Q 043115 52 FRTIQGAIDSVP 63 (196)
Q Consensus 52 y~tIq~AI~aa~ 63 (196)
+..+.+.+....
T Consensus 75 ~~~L~~~l~~~~ 86 (130)
T PF02472_consen 75 LEELEARLKELK 86 (130)
T ss_dssp CCCHHHHHHHHC
T ss_pred hHHHHHHHHHhh
Confidence 345555555443
No 131
>PF07265 TAP35_44: Tapetum specific protein TAP35/TAP44; InterPro: IPR009891 This family consists of several plant tapetum specific proteins. Members of this family are found in Arabidopsis thaliana, Brassica napus and Sinapis alba. Members of this family may be involved in sporopollenin formation and/or deposition [].
Probab=21.59 E-value=71 Score=23.86 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=23.6
Q ss_pred Ccccccchhh-hhhHhhhheeeeccccCCCCCCC-CCCCCcEEEEEcCC
Q 043115 1 MKNYSQNVSI-LVVATTIVFASITATCGSTATIP-KDFSAAVLIRVEKY 47 (196)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~i~V~~~ 47 (196)
|...|..-++ |+|.+++.+++..+ .+....|+ .+|+.+.++.++.+
T Consensus 1 MS~iSk~sslcLlll~~ff~sS~pa-~slR~pk~qsepas~qs~~~dSS 48 (119)
T PF07265_consen 1 MSKISKVSSLCLLLLVVFFLSSQPA-LSLRSPKPQSEPASPQSIMDDSS 48 (119)
T ss_pred CchhHHHHHHHHHHHHHHHHcCchh-hhhcCCcccCCcCCCcccccCCc
Confidence 6667766433 44444455555333 33333333 44555666666654
No 132
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=20.36 E-value=47 Score=22.27 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=8.7
Q ss_pred hhhhhHhhhheee
Q 043115 9 SILVVATTIVFAS 21 (196)
Q Consensus 9 ~~~~~~~~~~~~~ 21 (196)
.+++|+++++|++
T Consensus 11 riVLLISfiIlfg 23 (59)
T PF11119_consen 11 RIVLLISFIILFG 23 (59)
T ss_pred HHHHHHHHHHHHH
Confidence 5666677666666
No 133
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=20.34 E-value=3.1e+02 Score=22.24 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=24.5
Q ss_pred eCCcEEEEccEEee----------------cceEEEecCC-ceeEEcCEEEcc
Q 043115 148 SADRAAFYGCRILS----------------YQHTLLDDTG-NHYYSKCIIEGA 183 (196)
Q Consensus 148 ~~d~~~~~~c~~~g----------------~QDTl~~~~g-r~~f~~c~I~G~ 183 (196)
.++++.++|.+|+. ..|.+-...+ +-++.+|.+...
T Consensus 44 ~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~ 96 (200)
T PF00544_consen 44 GASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWG 96 (200)
T ss_dssp SCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEET
T ss_pred CCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEecc
Confidence 46789999998887 4577765554 459999999877
Done!