BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043116
(482 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/469 (69%), Positives = 372/469 (79%), Gaps = 16/469 (3%)
Query: 10 QFQISAPA-LSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQ 68
Q Q PA + + K E LP M+ GV+SDDN +QLEATT FRK+LS +R+ PIE+VIQ
Sbjct: 56 QAQAPVPASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQ 115
Query: 69 SGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDD 128
SGVVPRFV+FL RED+PQLQFEAA ALTNIASGTSENTKV IDHGAVPIFVKLL S SDD
Sbjct: 116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDD 175
Query: 129 VREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP 188
VREQAVWALGNVAGDS +CRD VL+ GAL+PLLA+LNEH KLSMLR ATWTLSNFCRGKP
Sbjct: 176 VREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP 235
Query: 189 QPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLL 248
QP F Q RPAL LA+LI SNDE+VLTDAC AL+YL+DGTNDKIQAVIEAGVCPRLV+LL
Sbjct: 236 QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 295
Query: 249 GHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISN 308
H S VL ALRT+GNIVTGDD QTQCII+ AL LL LL N KSIKKE CW ISN
Sbjct: 296 LHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISN 355
Query: 309 ITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGC 368
ITAGN++QIQAVI+AG+IGP+VNLLQ AEF KKEAAW ISNATSGG+H+QIK+LV EGC
Sbjct: 356 ITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGC 415
Query: 369 VKXXXXXXXXXXXQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIEN 428
+K +IVTVCL GLENILKVGE +K T GDVN ++Q+++EAEGLEKIEN
Sbjct: 416 IKPLCDLLICPDIRIVTVCLEGLENILKVGETDK-TLAAGDVNVFSQMIDEAEGLEKIEN 474
Query: 429 LQSHDNNDIHEMSVKILETYWCGRVVGPQPGLTYAGNEGEDALGSNVIA 477
LQSHDNN+I+E +VKILE YW +E +D +G+ +A
Sbjct: 475 LQSHDNNEIYEKAVKILEAYWM--------------DEEDDTMGATTVA 509
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/449 (71%), Positives = 364/449 (81%), Gaps = 15/449 (3%)
Query: 29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQ 88
LP M+ GV+SDDN +QLEATT FRK+LS +R+ PIE+VIQSGVVPRFV+FL RED+PQLQ
Sbjct: 38 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQ 97
Query: 89 FEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCR 148
FEAA ALTNIASGTSENTKV IDHGAVPIFVKLL S SDDVREQAVWALGNVAGDS +CR
Sbjct: 98 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCR 157
Query: 149 DFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRS 208
D VL+ GAL+PLLA+LNEH KLSMLR ATWTLSNFCRGKPQP F Q RPAL LA+LI S
Sbjct: 158 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHS 217
Query: 209 NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVT 268
NDE+VLTDAC AL+YL+DGTNDKIQAVIEAGVCPRLV+LL H S VL ALRT+GNIVT
Sbjct: 218 NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT 277
Query: 269 GDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGP 328
GDD QTQCII+ AL LL LL N KSIKKE CW ISNITAGN++QIQAVI+AG+IGP
Sbjct: 278 GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGP 337
Query: 329 IVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTVCL 388
+VNLLQ AEF KKEAAW ISNATSGG+H+QIK+LV EGC+K +IVTVCL
Sbjct: 338 LVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCL 397
Query: 389 IGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETY 448
GLENILKVGE +K T GDVN ++Q+++EAEGLEKIENLQSHDNN+I+E +VKILE Y
Sbjct: 398 EGLENILKVGETDK-TLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY 456
Query: 449 WCGRVVGPQPGLTYAGNEGEDALGSNVIA 477
W +E +D +G+ +A
Sbjct: 457 WM--------------DEEDDTMGATTVA 471
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 430 bits (1105), Expect = e-121, Method: Compositional matrix adjust.
Identities = 228/424 (53%), Positives = 296/424 (69%), Gaps = 4/424 (0%)
Query: 28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQS-GVVPRFVEFLMREDYPQ 86
I M+ ++S + QL AT FRK+LS + N PI++VI + GVV RFVEFL R++
Sbjct: 18 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 77
Query: 87 LQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR 146
LQFE+A LTNIASG S T++ I GAVPIF++LL+S +DV+EQAVWALGN+AGDS+
Sbjct: 78 LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 137
Query: 147 CRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPP-FNQIRPALRVLAQL 205
CRD+VL L PLL ++ +L+M R A W LSN CRGK PP F ++ P L VL+ L
Sbjct: 138 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 197
Query: 206 IRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGN 265
+ +D VL DAC AL+YL+DG NDKIQAVI+AGVC RLV+LL H V++ ALR +GN
Sbjct: 198 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 257
Query: 266 IVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGL 325
IVTGDD QTQ I+NC + L L+ + +SIKKE CW ISNITAGNR QIQ VIDA +
Sbjct: 258 IVTGDDIQTQVILNC-SALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANI 316
Query: 326 IGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVT 385
++++LQ AEF T+KEAAW I+NATSGG+ EQIK+LV GC+K +IV
Sbjct: 317 FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 376
Query: 386 VCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKIL 445
V L GLENIL++GE E + G +N Y L+EEA GL+KIE LQSH+N +I++ + ++
Sbjct: 377 VALNGLENILRLGEQEAKRNGTG-INPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLI 435
Query: 446 ETYW 449
E Y+
Sbjct: 436 EHYF 439
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 429 bits (1104), Expect = e-120, Method: Compositional matrix adjust.
Identities = 228/424 (53%), Positives = 296/424 (69%), Gaps = 4/424 (0%)
Query: 28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQS-GVVPRFVEFLMREDYPQ 86
I M+ ++S + QL AT FRK+LS + N PI++VI + GVV RFVEFL R++
Sbjct: 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 80
Query: 87 LQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR 146
LQFE+A LTNIASG S T++ I GAVPIF++LL+S +DV+EQAVWALGN+AGDS+
Sbjct: 81 LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 140
Query: 147 CRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPP-FNQIRPALRVLAQL 205
CRD+VL L PLL ++ +L+M R A W LSN CRGK PP F ++ P L VL+ L
Sbjct: 141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 200
Query: 206 IRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGN 265
+ +D VL DAC AL+YL+DG NDKIQAVI+AGVC RLV+LL H V++ ALR +GN
Sbjct: 201 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260
Query: 266 IVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGL 325
IVTGDD QTQ I+NC + L L+ + +SIKKE CW ISNITAGNR QIQ VIDA +
Sbjct: 261 IVTGDDIQTQVILNC-SALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANI 319
Query: 326 IGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVT 385
++++LQ AEF T+KEAAW I+NATSGG+ EQIK+LV GC+K +IV
Sbjct: 320 FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 379
Query: 386 VCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKIL 445
V L GLENIL++GE E + G +N Y L+EEA GL+KIE LQSH+N +I++ + ++
Sbjct: 380 VALNGLENILRLGEQEAKRNGTG-INPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLI 438
Query: 446 ETYW 449
E Y+
Sbjct: 439 EHYF 442
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 422 bits (1084), Expect = e-118, Method: Compositional matrix adjust.
Identities = 230/425 (54%), Positives = 299/425 (70%), Gaps = 8/425 (1%)
Query: 29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQ-L 87
LP M + SDD + QL AT FR++LS + PI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 59
Query: 88 QFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC 147
Q EAA ALTNIASGTS TKV +D AVP+F++LL + S +V+EQA+WALGNVAGDS+
Sbjct: 60 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 148 RDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG-KPQPPFNQIRPALRVLAQLI 206
RD+VL A+ P+L N + K S++RTATWTLSN CRG KPQP ++ + AL LA+LI
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
S D + L DAC A++YL+DG + IQAVI+ + RLV+LL H S LV T ALR +GNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
VTG+D QTQ +IN G L L LL+ + ++IKKE CW ISNITAGN EQIQAVIDA LI
Sbjct: 239 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 297
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQ--IKHLVREGCVKXXXXXXXXXXXQIV 384
P+V LL+ AE+ TKKEA W ISNA+SGG I++LV +GC+K +I+
Sbjct: 298 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 357
Query: 385 TVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKI 444
V L LENILK+GEA+K + ++N+ A +E+A G+EKI N Q ++N+ I+E + KI
Sbjct: 358 EVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 416
Query: 445 LETYW 449
+ETY+
Sbjct: 417 IETYF 421
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 422 bits (1084), Expect = e-118, Method: Compositional matrix adjust.
Identities = 230/425 (54%), Positives = 299/425 (70%), Gaps = 8/425 (1%)
Query: 29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQ-L 87
LP M + SDD + QL AT FR++LS + PI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 147
Query: 88 QFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC 147
Q EAA ALTNIASGTS TKV +D AVP+F++LL + S +V+EQA+WALGNVAGDS+
Sbjct: 148 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 207
Query: 148 RDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG-KPQPPFNQIRPALRVLAQLI 206
RD+VL A+ P+L N + K S++RTATWTLSN CRG KPQP ++ + AL LA+LI
Sbjct: 208 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 266
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
S D + L DAC A++YL+DG + IQAVI+ + RLV+LL H S LV T ALR +GNI
Sbjct: 267 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
VTG+D QTQ +IN G L L LL+ + ++IKKE CW ISNITAGN EQIQAVIDA LI
Sbjct: 327 VTGNDLQTQVVINAGVLP-ALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 385
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQ--IKHLVREGCVKXXXXXXXXXXXQIV 384
P+V LL+ AE+ TKKEA W ISNA+SGG I++LV +GC+K +I+
Sbjct: 386 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 445
Query: 385 TVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKI 444
V L LENILK+GEA+K + ++N+ A +E+A G+EKI N Q ++N+ I+E + KI
Sbjct: 446 EVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 504
Query: 445 LETYW 449
+ETY+
Sbjct: 505 IETYF 509
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 420 bits (1080), Expect = e-118, Method: Compositional matrix adjust.
Identities = 229/425 (53%), Positives = 299/425 (70%), Gaps = 8/425 (1%)
Query: 29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQ-L 87
LP M + SDD + QL AT FR++LS + PI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 59
Query: 88 QFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC 147
Q EAA ALTNIASGTS TKV +D AVP+F++LL + S +V+EQA+WALGNVAGDS+
Sbjct: 60 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 148 RDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG-KPQPPFNQIRPALRVLAQLI 206
RD+VL A+ P+L N + K S++RTATWTLSN CRG KPQP ++ + AL LA+LI
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
S D + L DAC A++YL+DG + IQAVI+ + RLV+LL H S LV T ALR +GNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
VTG+D QTQ +IN G L L LL+ + ++IKKE CW ISNITAGN EQIQAVIDA LI
Sbjct: 239 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 297
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQ--IKHLVREGCVKXXXXXXXXXXXQIV 384
P+V LL+ AE+ TKKEA W ISNA+SGG I++LV +GC+K +I+
Sbjct: 298 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 357
Query: 385 TVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKI 444
V L LENI+K+GEA+K + ++N+ A +E+A G+EKI N Q ++N+ I+E + KI
Sbjct: 358 EVTLDALENIIKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 416
Query: 445 LETYW 449
+ETY+
Sbjct: 417 IETYF 421
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 419 bits (1077), Expect = e-117, Method: Compositional matrix adjust.
Identities = 230/425 (54%), Positives = 298/425 (70%), Gaps = 8/425 (1%)
Query: 29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQ-L 87
LP M + SDD + QL AT FR++LS + PI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 3 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 61
Query: 88 QFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC 147
Q EAA ALTNIASGTS TKV +D AVP+F++LL + S +V+EQA+WALGNVAGDS+
Sbjct: 62 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 148 RDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG-KPQPPFNQIRPALRVLAQLI 206
RD+VL A+ P+L N + K S++RTATWTLSN CRG KPQP ++ + AL LA+LI
Sbjct: 122 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 180
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
S D + L DAC A++YL+DG + IQAVI+ + RLV+LL H S LV T ALR +GNI
Sbjct: 181 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 240
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
VTG+D QTQ +IN G L L LL+ + ++IKKE CW ISNITAGN EQIQAVIDA LI
Sbjct: 241 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 299
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQ--IKHLVREGCVKXXXXXXXXXXXQIV 384
P+V LL+ AE TKKEA W ISNA+SGG I++LV +GC+K +I+
Sbjct: 300 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 359
Query: 385 TVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKI 444
V L LENILK+GEA+K + ++N+ A +E+A G+EKI N Q ++N+ I+E + KI
Sbjct: 360 EVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 418
Query: 445 LETYW 449
+ETY+
Sbjct: 419 IETYF 423
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 419 bits (1076), Expect = e-117, Method: Compositional matrix adjust.
Identities = 230/425 (54%), Positives = 298/425 (70%), Gaps = 8/425 (1%)
Query: 29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQ-L 87
LP M + SDD + QL AT FR++LS + PI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 3 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 61
Query: 88 QFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC 147
Q EAA ALTNIASGTS TKV +D AVP+F++LL + S +V+EQA+WALGNVAGDS+
Sbjct: 62 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 148 RDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG-KPQPPFNQIRPALRVLAQLI 206
RD+VL A+ P+L N + K S++RTATWTLSN CRG KPQP ++ + AL LA+LI
Sbjct: 122 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 180
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
S D + L DAC A++YL+DG + IQAVI+ + RLV+LL H S LV T ALR +GNI
Sbjct: 181 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 240
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
VTG+D QTQ +IN G L L LL+ + ++IKKE CW ISNITAGN EQIQAVIDA LI
Sbjct: 241 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 299
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQ--IKHLVREGCVKXXXXXXXXXXXQIV 384
P+V LL+ AE TKKEA W ISNA+SGG I++LV +GC+K +I+
Sbjct: 300 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 359
Query: 385 TVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKI 444
V L LENILK+GEA+K + ++N+ A +E+A G+EKI N Q ++N+ I+E + KI
Sbjct: 360 EVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 418
Query: 445 LETYW 449
+ETY+
Sbjct: 419 IETYF 423
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 419 bits (1076), Expect = e-117, Method: Compositional matrix adjust.
Identities = 230/425 (54%), Positives = 298/425 (70%), Gaps = 8/425 (1%)
Query: 29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQ-L 87
LP M + SDD + QL AT FR++LS + PI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 60
Query: 88 QFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC 147
Q EAA ALTNIASGTS TKV +D AVP+F++LL + S +V+EQA+WALGNVAGDS+
Sbjct: 61 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 148 RDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG-KPQPPFNQIRPALRVLAQLI 206
RD+VL A+ P+L N + K S++RTATWTLSN CRG KPQP ++ + AL LA+LI
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
S D + L DAC A++YL+DG + IQAVI+ + RLV+LL H S LV T ALR +GNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
VTG+D QTQ +IN G L L LL+ + ++IKKE CW ISNITAGN EQIQAVIDA LI
Sbjct: 240 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 298
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQ--IKHLVREGCVKXXXXXXXXXXXQIV 384
P+V LL+ AE TKKEA W ISNA+SGG I++LV +GC+K +I+
Sbjct: 299 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 358
Query: 385 TVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKI 444
V L LENILK+GEA+K + ++N+ A +E+A G+EKI N Q ++N+ I+E + KI
Sbjct: 359 EVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 417
Query: 445 LETYW 449
+ETY+
Sbjct: 418 IETYF 422
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 419 bits (1076), Expect = e-117, Method: Compositional matrix adjust.
Identities = 230/425 (54%), Positives = 298/425 (70%), Gaps = 8/425 (1%)
Query: 29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQ-L 87
LP M + SDD + QL AT FR++LS + PI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 60
Query: 88 QFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC 147
Q EAA ALTNIASGTS TKV +D AVP+F++LL + S +V+EQA+WALGNVAGDS+
Sbjct: 61 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 148 RDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG-KPQPPFNQIRPALRVLAQLI 206
RD+VL A+ P+L N + K S++RTATWTLSN CRG KPQP ++ + AL LA+LI
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
S D + L DAC A++YL+DG + IQAVI+ + RLV+LL H S LV T ALR +GNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
VTG+D QTQ +IN G L L LL+ + ++IKKE CW ISNITAGN EQIQAVIDA LI
Sbjct: 240 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 298
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQ--IKHLVREGCVKXXXXXXXXXXXQIV 384
P+V LL+ AE TKKEA W ISNA+SGG I++LV +GC+K +I+
Sbjct: 299 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 358
Query: 385 TVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKI 444
V L LENILK+GEA+K + ++N+ A +E+A G+EKI N Q ++N+ I+E + KI
Sbjct: 359 EVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 417
Query: 445 LETYW 449
+ETY+
Sbjct: 418 IETYF 422
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 367 bits (942), Expect = e-102, Method: Compositional matrix adjust.
Identities = 193/423 (45%), Positives = 272/423 (64%), Gaps = 12/423 (2%)
Query: 32 MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
+V G+ S++ + QL+AT RK+LS ++ PI+ +I++G++P+FV FL + D +QFE+
Sbjct: 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 92 ARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151
A ALTNIASGTSE TK +D GA+P F+ LLASP + EQAVWALGN+AGD S RD V
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 152 LSQGALIPLLAELN----EHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLI 206
+ GA+ PLLA L LR TWTLSN CR K P PP + + L L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
ND +VL D+C A++YL DG N++I+ V++ GV P+LVKLLG ++T ALR IGNI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
VTG D QTQ +I+ GAL LL N +I+KE W +SNITAG ++QIQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTV 386
+V +L A+F T+KEAAW I+N TSGGT EQI +LV G ++ +I+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
L + NI + E +G+ + + ++EE GL+KIE LQ H+N +++ S+ ++E
Sbjct: 421 ILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 474
Query: 447 TYW 449
Y+
Sbjct: 475 KYF 477
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 367 bits (942), Expect = e-102, Method: Compositional matrix adjust.
Identities = 193/423 (45%), Positives = 272/423 (64%), Gaps = 12/423 (2%)
Query: 32 MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
+V G+ S++ + QL+AT RK+LS ++ PI+ +I++G++P+FV FL + D +QFE+
Sbjct: 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 92 ARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151
A ALTNIASGTSE TK +D GA+P F+ LLASP + EQAVWALGN+AGD S RD V
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 152 LSQGALIPLLAELN----EHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLI 206
+ GA+ PLLA L LR TWTLSN CR K P PP + + L L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
ND +VL D+C A++YL DG N++I+ V++ GV P+LVKLLG ++T ALR IGNI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
VTG D QTQ +I+ GAL LL N +I+KE W +SNITAG ++QIQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTV 386
+V +L A+F T+KEAAW I+N TSGGT EQI +LV G ++ +I+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
L + NI + E +G+ + + ++EE GL+KIE LQ H+N +++ S+ ++E
Sbjct: 421 ILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 474
Query: 447 TYW 449
Y+
Sbjct: 475 KYF 477
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 367 bits (941), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/423 (45%), Positives = 272/423 (64%), Gaps = 12/423 (2%)
Query: 32 MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
+V G+ S++ + QL+AT RK+LS ++ PI+ +I++G++P+FV FL + D +QFE+
Sbjct: 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 92 ARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151
A ALTNIASGTSE TK +D GA+P F+ LLASP + EQAVWALGN+AGD S RD V
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 152 LSQGALIPLLAELN----EHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLI 206
+ GA+ PLLA L LR TWTLSN CR K P PP + + L L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
ND +VL D+C A++YL DG N++I+ V++ GV P+LVKLLG ++T ALR IGNI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
VTG D QTQ +I+ GAL LL N +I+KE W +SNITAG ++QIQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTV 386
+V +L A+F T+KEAAW I+N TSGGT EQI +LV G ++ +I+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
L + NI + E +G+ + + ++EE GL+KIE LQ H+N +++ S+ ++E
Sbjct: 421 ILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 474
Query: 447 TYW 449
Y+
Sbjct: 475 KYF 477
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 367 bits (941), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/423 (45%), Positives = 272/423 (64%), Gaps = 12/423 (2%)
Query: 32 MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
+V G+ S++ + QL+AT RK+LS ++ PI+ +I++G++P+FV FL + D +QFE+
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 92 ARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151
A ALTNIASGTSE TK +D GA+P F+ LLASP + EQAVWALGN+AGD S RD V
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 152 LSQGALIPLLAELN----EHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLI 206
+ GA+ PLLA L LR TWTLSN CR K P PP + + L L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
ND +VL D+C A++YL DG N++I+ V++ GV P+LVKLLG ++T ALR IGNI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
VTG D QTQ +I+ GAL LL N +I+KE W +SNITAG ++QIQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTV 386
+V +L A+F T+KEAAW I+N TSGGT EQI +LV G ++ +I+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
L + NI + E +G+ + + ++EE GL+KIE LQ H+N +++ S+ ++E
Sbjct: 371 ILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 424
Query: 447 TYW 449
Y+
Sbjct: 425 KYF 427
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 367 bits (941), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/423 (45%), Positives = 272/423 (64%), Gaps = 12/423 (2%)
Query: 32 MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
+V G+ S++ + QL+AT RK+LS ++ PI+ +I++G++P+FV FL + D +QFE+
Sbjct: 18 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 77
Query: 92 ARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151
A ALTNIASGTSE TK +D GA+P F+ LLASP + EQAVWALGN+AGD S RD V
Sbjct: 78 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137
Query: 152 LSQGALIPLLAELN----EHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLI 206
+ GA+ PLLA L LR TWTLSN CR K P PP + + L L +L+
Sbjct: 138 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 197
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
ND +VL D+C A++YL DG N++I+ V++ GV P+LVKLLG ++T ALR IGNI
Sbjct: 198 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 257
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
VTG D QTQ +I+ GAL LL N +I+KE W +SNITAG ++QIQ V++ GL+
Sbjct: 258 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 316
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTV 386
+V +L A+F T+KEAAW I+N TSGGT EQI +LV G ++ +I+ V
Sbjct: 317 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 376
Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
L + NI + E +G+ + + ++EE GL+KIE LQ H+N +++ S+ ++E
Sbjct: 377 ILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 430
Query: 447 TYW 449
Y+
Sbjct: 431 KYF 433
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 367 bits (941), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/423 (45%), Positives = 272/423 (64%), Gaps = 12/423 (2%)
Query: 32 MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
+V G+ S++ + QL+AT RK+LS ++ PI+ +I++G++P+FV FL + D +QFE+
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 92 ARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151
A ALTNIASGTSE TK +D GA+P F+ LLASP + EQAVWALGN+AGD S RD V
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 152 LSQGALIPLLAELN----EHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLI 206
+ GA+ PLLA L LR TWTLSN CR K P PP + + L L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
ND +VL D+C A++YL DG N++I+ V++ GV P+LVKLLG ++T ALR IGNI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
VTG D QTQ +I+ GAL LL N +I+KE W +SNITAG ++QIQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTV 386
+V +L A+F T+KEAAW I+N TSGGT EQI +LV G ++ +I+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
L + NI + E +G+ + + ++EE GL+KIE LQ H+N +++ S+ ++E
Sbjct: 371 ILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 424
Query: 447 TYW 449
Y+
Sbjct: 425 KYF 427
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 367 bits (941), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/423 (45%), Positives = 272/423 (64%), Gaps = 12/423 (2%)
Query: 32 MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
+V G+ S++ + QL+AT RK+LS ++ PI+ +I++G++P+FV FL + D +QFE+
Sbjct: 7 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 92 ARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151
A ALTNIASGTSE TK +D GA+P F+ LLASP + EQAVWALGN+AGD S RD V
Sbjct: 67 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 152 LSQGALIPLLAELN----EHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLI 206
+ GA+ PLLA L LR TWTLSN CR K P PP + + L L +L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
ND +VL D+C A++YL DG N++I+ V++ GV P+LVKLLG ++T ALR IGNI
Sbjct: 187 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 246
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
VTG D QTQ +I+ GAL LL N +I+KE W +SNITAG ++QIQ V++ GL+
Sbjct: 247 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 305
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTV 386
+V +L A+F T+KEAAW I+N TSGGT EQI +LV G ++ +I+ V
Sbjct: 306 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 365
Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
L + NI + E +G+ + + ++EE GL+KIE LQ H+N +++ S+ ++E
Sbjct: 366 ILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 419
Query: 447 TYW 449
Y+
Sbjct: 420 KYF 422
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 367 bits (941), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/423 (45%), Positives = 272/423 (64%), Gaps = 12/423 (2%)
Query: 32 MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
+V G+ S++ + QL+AT RK+LS ++ PI+ +I++G++P+FV FL + D +QFE+
Sbjct: 11 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 92 ARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151
A ALTNIASGTSE TK +D GA+P F+ LLASP + EQAVWALGN+AGD S RD V
Sbjct: 71 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 152 LSQGALIPLLAELN----EHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLI 206
+ GA+ PLLA L LR TWTLSN CR K P PP + + L L +L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
ND +VL D+C A++YL DG N++I+ V++ GV P+LVKLLG ++T ALR IGNI
Sbjct: 191 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 250
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
VTG D QTQ +I+ GAL LL N +I+KE W +SNITAG ++QIQ V++ GL+
Sbjct: 251 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 309
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTV 386
+V +L A+F T+KEAAW I+N TSGGT EQI +LV G ++ +I+ V
Sbjct: 310 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 369
Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
L + NI + E +G+ + + ++EE GL+KIE LQ H+N +++ S+ ++E
Sbjct: 370 ILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 423
Query: 447 TYW 449
Y+
Sbjct: 424 KYF 426
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/423 (45%), Positives = 272/423 (64%), Gaps = 12/423 (2%)
Query: 32 MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
+V G+ S++ + QL+AT RK+LS ++ PI+ +I++G++P+FV FL + D +QFE+
Sbjct: 48 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 107
Query: 92 ARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151
A ALTNIASGTSE TK +D GA+P F+ LLASP + EQAVWALGN+AGD S RD V
Sbjct: 108 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 167
Query: 152 LSQGALIPLLAELN----EHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLI 206
+ GA+ PLLA L LR TWTLSN CR K P PP + + L L +L+
Sbjct: 168 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 227
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
ND +VL D+C A++YL DG N++I+ V++ GV P+LVKLLG ++T ALR IGNI
Sbjct: 228 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 287
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
VTG D QTQ +I+ GAL LL N +I+KE W +SNITAG ++QIQ V++ GL+
Sbjct: 288 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 346
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTV 386
+V +L A+F T+KEAAW I+N TSGGT EQI +LV G ++ +I+ V
Sbjct: 347 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 406
Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
L + NI + E +G+ + + ++EE GL+KIE LQ H+N +++ S+ ++E
Sbjct: 407 ILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 460
Query: 447 TYW 449
Y+
Sbjct: 461 KYF 463
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/423 (45%), Positives = 272/423 (64%), Gaps = 12/423 (2%)
Query: 32 MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
+V G+ S++ + QL+AT RK+LS ++ PI+ +I++G++P+FV FL + D +QFE+
Sbjct: 7 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 92 ARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151
A ALTNIASGTSE TK +D GA+P F+ LLASP + EQAVWALGN+AGD S RD V
Sbjct: 67 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 152 LSQGALIPLLAELN----EHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLI 206
+ GA+ PLLA L LR TWTLSN CR K P PP + + L L +L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
ND +VL D+C A++YL DG N++I+ V++ GV P+LVKLLG ++T ALR IGNI
Sbjct: 187 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 246
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
VTG D QTQ +I+ GAL LL N +I+KE W +SNITAG ++QIQ V++ GL+
Sbjct: 247 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 305
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTV 386
+V +L A+F T+KEAAW I+N TSGGT EQI +LV G ++ +I+ V
Sbjct: 306 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 365
Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
L + NI + E +G+ + + ++EE GL+KIE LQ H+N +++ S+ ++E
Sbjct: 366 ILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 419
Query: 447 TYW 449
Y+
Sbjct: 420 KYF 422
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/423 (45%), Positives = 272/423 (64%), Gaps = 12/423 (2%)
Query: 32 MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
+V G+ S++ + QL+AT RK+LS ++ PI+ +I++G++P+FV FL + D +QFE+
Sbjct: 46 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 105
Query: 92 ARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151
A ALTNIASGTSE TK +D GA+P F+ LLASP + EQAVWALGN+AGD S RD V
Sbjct: 106 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 165
Query: 152 LSQGALIPLLAELN----EHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLI 206
+ GA+ PLLA L LR TWTLSN CR K P PP + + L L +L+
Sbjct: 166 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 225
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
ND +VL D+C A++YL DG N++I+ V++ GV P+LVKLLG ++T ALR IGNI
Sbjct: 226 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 285
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
VTG D QTQ +I+ GAL LL N +I+KE W +SNITAG ++QIQ V++ GL+
Sbjct: 286 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 344
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTV 386
+V +L A+F T+KEAAW I+N TSGGT EQI +LV G ++ +I+ V
Sbjct: 345 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 404
Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
L + NI + E +G+ + + ++EE GL+KIE LQ H+N +++ S+ ++E
Sbjct: 405 ILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 458
Query: 447 TYW 449
Y+
Sbjct: 459 KYF 461
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/423 (45%), Positives = 272/423 (64%), Gaps = 12/423 (2%)
Query: 32 MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
+V G+ S++ + QL+AT RK+LS ++ PI+ +I++G++P+FV FL + D +QFE+
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 92 ARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151
A ALTNIASGTSE TK +D GA+P F+ LLASP + EQAVWALGN+AGD S RD V
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 152 LSQGALIPLLAELN----EHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLI 206
+ GA+ PLLA L LR TWTLSN CR K P PP + + L L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
ND +VL D+C A++YL DG N++I+ V++ GV P+LVKLLG ++T ALR IGNI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
VTG D QTQ +I+ GAL LL N +I+KE W +SNITAG ++QIQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTV 386
+V +L A+F T+KEAAW I+N TSGGT EQI +LV G ++ +I+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
L + NI + E +G+ + + ++EE GL+KIE LQ H+N +++ S+ ++E
Sbjct: 371 ILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 424
Query: 447 TYW 449
Y+
Sbjct: 425 KYF 427
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/423 (45%), Positives = 272/423 (64%), Gaps = 12/423 (2%)
Query: 32 MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
+V G+ S++ + QL+AT RK+LS ++ PI+ +I++G++P+FV FL + D +QFE+
Sbjct: 38 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 97
Query: 92 ARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151
A ALTNIASGTSE TK +D GA+P F+ LLASP + EQAVWALGN+AGD S RD V
Sbjct: 98 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 157
Query: 152 LSQGALIPLLAELN----EHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLI 206
+ GA+ PLLA L LR TWTLSN CR K P PP + + L L +L+
Sbjct: 158 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 217
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
ND +VL D+C A++YL DG N++I+ V++ GV P+LVKLLG ++T ALR IGNI
Sbjct: 218 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 277
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
VTG D QTQ +I+ GAL LL N +I+KE W +SNITAG ++QIQ V++ GL+
Sbjct: 278 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 336
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTV 386
+V +L A+F T+KEAAW I+N TSGGT EQI +LV G ++ +I+ V
Sbjct: 337 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 396
Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
L + NI + E +G+ + + ++EE GL+KIE LQ H+N +++ S+ ++E
Sbjct: 397 ILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 450
Query: 447 TYW 449
Y+
Sbjct: 451 KYF 453
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/423 (45%), Positives = 272/423 (64%), Gaps = 12/423 (2%)
Query: 32 MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
+V G+ S++ + QL+AT RK+LS ++ PI+ +I++G++P+FV FL + D +QFE+
Sbjct: 11 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 92 ARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151
A ALTNIASGTSE TK +D GA+P F+ LLASP + EQAVWALGN+AGD S RD V
Sbjct: 71 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 152 LSQGALIPLLAELN----EHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLI 206
+ GA+ PLLA L LR TWTLSN CR K P PP + + L L +L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
ND +VL D+C A++YL DG N++I+ V++ GV P+LVKLLG ++T ALR IGNI
Sbjct: 191 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 250
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
VTG D QTQ +I+ GAL LL N +I+KE W +SNITAG ++QIQ V++ GL+
Sbjct: 251 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 309
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTV 386
+V +L A+F T+KEAAW I+N TSGGT EQI +LV G ++ +I+ V
Sbjct: 310 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 369
Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
L + NI + E +G+ + + ++EE GL+KIE LQ H+N +++ S+ ++E
Sbjct: 370 ILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 423
Query: 447 TYW 449
Y+
Sbjct: 424 KYF 426
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 363 bits (931), Expect = e-100, Method: Compositional matrix adjust.
Identities = 192/423 (45%), Positives = 272/423 (64%), Gaps = 12/423 (2%)
Query: 32 MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
+V G+ S + + QL+AT RK+LS ++ PI+ +I++G++P+FV FL R D +QFE+
Sbjct: 13 IVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFES 72
Query: 92 ARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151
A ALTNIASGTSE TK +D GA+P F+ LLASP + EQAVWALGN+AGD S RD V
Sbjct: 73 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLV 132
Query: 152 LSQGALIPLLAELNEHAKLSM----LRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLI 206
+ GA+ PLLA L S+ LR TWTLSN CR K P PP + + L L +L+
Sbjct: 133 IKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLL 192
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
+D +VL D C A++YL DG N++I V++ GV P+LVKLLG ++T ALR IGNI
Sbjct: 193 HHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNI 252
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
VTG D QTQ +I+ GAL LL N +I+KE W +SNITAG ++QIQ V++ GL+
Sbjct: 253 VTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 311
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTV 386
+V++L A+F T+KEA W ++N TSGGT EQI +LV G ++ +I+ V
Sbjct: 312 PFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILV 371
Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
L + NI + E +G+ + + ++EE GL+KIE LQ+H+N +++ S+ ++E
Sbjct: 372 ILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQNHENESVYKASLSLIE 425
Query: 447 TYW 449
Y+
Sbjct: 426 KYF 428
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 361 bits (926), Expect = e-100, Method: Compositional matrix adjust.
Identities = 191/423 (45%), Positives = 270/423 (63%), Gaps = 12/423 (2%)
Query: 32 MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
+V G+ S++ + QL+AT RK+LS ++ PI+ +I++G++P+FV FL + D +QFE+
Sbjct: 81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 140
Query: 92 ARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151
A ALTNIASGTSE TK +D GA+P F+ LLASP + EQAVWALGN+AG S RD V
Sbjct: 141 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLV 200
Query: 152 LSQGALIPLLAELN----EHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLI 206
+ GA+ PLLA L LR TWTLSN CR K P PP + + L L +L+
Sbjct: 201 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 260
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
ND +VL D+C A++YL DG N++I+ V++ GV P+LVKLLG ++T ALR IGNI
Sbjct: 261 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
VTG D QTQ +I+ GAL LL N +I+KE W +SNITAG ++QIQ V++ GL+
Sbjct: 321 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 379
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTV 386
+V +L A+F T+K AAW I+N TSGGT EQI +LV G ++ +I+ V
Sbjct: 380 PFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 439
Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
L + NI + E +G+ + + ++EE GL+KIE LQ H+N +++ S+ ++E
Sbjct: 440 ILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 493
Query: 447 TYW 449
Y+
Sbjct: 494 KYF 496
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/248 (36%), Positives = 131/248 (52%), Gaps = 14/248 (5%)
Query: 199 LRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTA 258
L + Q + S+D + A R + + N++IQAVI+AG P LV+LL + +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 259 ALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQ 318
AL + NI +G + Q Q +I+ GAL L+ LL + N+ I +E W +SNI +G EQIQ
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 319 AVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXX 378
AVIDAG + +V LL +EA W +SN SGG +EQI+ ++ G +
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSS 191
Query: 379 XXXQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIH 438
QI+ L L NI G N+ Q V+EA LEK+E LQSH+N I
Sbjct: 192 PNEQILQEALWALSNIASGG------------NEQKQAVKEAGALEKLEQLQSHENEKIQ 239
Query: 439 EMSVKILE 446
+ + + LE
Sbjct: 240 KEAQEALE 247
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 131/232 (56%), Gaps = 12/232 (5%)
Query: 29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQ 88
LP M + SDD + QL AT F ++LS D N I+ VI +G +P V+ L + LQ
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 89 FEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCR 148
EA AL+NIASG +E + ID GA+P V+LL+SP++ + ++A+WAL N+A +
Sbjct: 73 -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 149 DFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRP-----ALRVLA 203
V+ GAL P L +L +L+ A W LSN G + QI+ AL L
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNE----QIQAVIDAGALPALV 186
Query: 204 QLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLV 255
QL+ S +E++L +A AL+ +A G N++ QAV EAG +L +L H + +
Sbjct: 187 QLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 238
Score = 128 bits (321), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 103/170 (60%), Gaps = 3/170 (1%)
Query: 198 ALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLT 257
AL L QL+ S +E++L +A AL+ +A G N++IQAVI+AG P LV+LL + +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 258 AALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQI 317
AL + NI +G + Q Q +I+ GAL L+ LL + N+ I +E W +SNI +G EQI
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 173
Query: 318 QAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREG 367
QAVIDAG + +V LL +EA W +SN SGG + K V+E
Sbjct: 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEA 221
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 121/226 (53%), Gaps = 13/226 (5%)
Query: 126 SDDVREQ--AVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF 183
SDD++EQ A + D + V+ GAL P L +L +L+ A W LSN
Sbjct: 23 SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNI 81
Query: 184 CRGKPQPPFNQIRP-----ALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEA 238
G + QI+ AL L QL+ S +E++L +A AL+ +A G N++IQAVI+A
Sbjct: 82 ASGGNE----QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 137
Query: 239 GVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSI 298
G P LV+LL + +L AL + NI +G + Q Q +I+ GAL L+ LL + N+ I
Sbjct: 138 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQI 196
Query: 299 KKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEA 344
+E W +SNI +G EQ QAV +AG + + L +KEA
Sbjct: 197 LQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA 242
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Query: 29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQ 88
LP +V + S + ++ EA + S N I+ VI +G +P V+ L + LQ
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQILQ 198
Query: 89 FEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWAL 137
EA AL+NIASG +E + + GA+ +L + ++ ++++A AL
Sbjct: 199 -EALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 100/172 (58%), Gaps = 3/172 (1%)
Query: 199 LRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTA 258
L + Q + S D++ L A R L+ +A G N++IQAVI+AG P LV+LL + +L
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 259 ALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQ 318
AL + NI +G + Q Q +I+ GAL L+ LL + N+ I +E W +SNI +G EQIQ
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 319 AVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVK 370
AVIDAG + +V LL +EA W +SN SGG + K V+E +
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEAGAE 182
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 103/206 (50%), Gaps = 14/206 (6%)
Query: 241 CPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKK 300
P++V+ L + L +ALR + I +G + Q Q +I+ GAL L+ LL + N+ I +
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQ 72
Query: 301 EVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQI 360
E W +SNI +G EQIQAVIDAG + +V LL +EA W +SN SGG +EQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 361 KHLVREGCVKXXXXXXXXXXXQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEA 420
+ ++ G + QI+ L L NI G N+ Q V+EA
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG------------NEQKQAVKEA 179
Query: 421 EGLEKIENLQSHDNNDIHEMSVKILE 446
+E LQS N I + + + LE
Sbjct: 180 GAEPALEQLQSSPNEKIQKEAQEALE 205
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 81/127 (63%), Gaps = 1/127 (0%)
Query: 198 ALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLT 257
AL L QL+ S +E++L +A AL+ +A G N++IQAVI+AG P LV+LL + +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 258 AALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQI 317
AL + NI +G + Q Q +I+ GAL L+ LL + N+ I +E W +SNI +G EQ
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQK 173
Query: 318 QAVIDAG 324
QAV +AG
Sbjct: 174 QAVKEAG 180
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 106/201 (52%), Gaps = 18/201 (8%)
Query: 29 LPTMVAGVWSDDNKVQLEATTLFRKM--LSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQ 86
LP MV + S D Q E + RK+ ++ N I+ VI +G +P V+ L +
Sbjct: 14 LPQMVQQLNSPD---QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 87 LQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR 146
LQ EA AL+NIASG +E + ID GA+P V+LL+SP++ + ++A+WAL N+A +
Sbjct: 71 LQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 147 CRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALR------ 200
V+ GAL P L +L +L+ A W LSN G N+ + A++
Sbjct: 130 QIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGG-----NEQKQAVKEAGAEP 183
Query: 201 VLAQLIRSNDEKVLTDACRAL 221
L QL S +EK+ +A AL
Sbjct: 184 ALEQLQSSPNEKIQKEAQEAL 204
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 99/168 (58%), Gaps = 3/168 (1%)
Query: 199 LRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTA 258
L + Q + S D++ L A R L+ +A G N++IQAVI+AG P LV+LL + +L
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 259 ALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQ 318
AL + NI +G + Q Q +I+ GAL L+ LL + N+ I +E W +SNI +G EQIQ
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 319 AVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVRE 366
AVIDAG + +V LL +EA W +SN SGG + K V+E
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKE 178
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 108/206 (52%), Gaps = 14/206 (6%)
Query: 241 CPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKK 300
P++V+ L + L +ALR + I +G + Q Q +I+ GAL L+ LL + N+ I +
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQ 72
Query: 301 EVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQI 360
E W +SNI +G EQIQAVIDAG + +V LL +EA W +SN SGG +EQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 361 KHLVREGCVKXXXXXXXXXXXQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEA 420
+ ++ G + QI+ L L NI G N+ Q V+EA
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG------------NEQKQAVKEA 179
Query: 421 EGLEKIENLQSHDNNDIHEMSVKILE 446
LEK+E LQSH+N I + + + LE
Sbjct: 180 GALEKLEQLQSHENEKIQKEAQEALE 205
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 88/147 (59%), Gaps = 1/147 (0%)
Query: 198 ALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLT 257
AL L QL+ S +E++L +A AL+ +A G N++IQAVI+AG P LV+LL + +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 258 AALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQI 317
AL + NI +G + Q Q +I+ GAL L+ LL + N+ I +E W +SNI +G EQ
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQK 173
Query: 318 QAVIDAGLIGPIVNLLQDAEFGTKKEA 344
QAV +AG + + L +KEA
Sbjct: 174 QAVKEAGALEKLEQLQSHENEKIQKEA 200
Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 104/199 (52%), Gaps = 8/199 (4%)
Query: 29 LPTMVAGVWSDDNKVQLEATTLFRKM--LSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQ 86
LP MV + S D Q E + RK+ ++ N I+ VI +G +P V+ L +
Sbjct: 14 LPQMVQQLNSPD---QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 87 LQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR 146
LQ EA AL+NIASG +E + ID GA+P V+LL+SP++ + ++A+WAL N+A +
Sbjct: 71 LQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 147 CRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCR-GKPQPPFNQIRPALRVLAQL 205
V+ GAL P L +L +L+ A W LSN G Q + AL L QL
Sbjct: 130 QIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 188
Query: 206 IRSNDEKVLTDACRALAYL 224
+EK+ +A AL L
Sbjct: 189 QSHENEKIQKEAQEALEKL 207
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 130/286 (45%), Gaps = 48/286 (16%)
Query: 72 VPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVRE 131
V + V+ L D + Q EAAR L IASG + K +D G V + VKLL S +V++
Sbjct: 4 VEKLVKLLTSTDS-ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQK 62
Query: 132 QAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPP 191
+A AL +N G P
Sbjct: 63 EAARAL-------------------------------------------ANIASG-PDEA 78
Query: 192 FNQIRPA--LRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLG 249
I A + VL +L+ S D +V +A RALA +A G ++ I+A+++AG LVKLL
Sbjct: 79 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 138
Query: 250 HRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNI 309
V A R + NI +G D + I++ G + L+ LL ++ ++KE ++NI
Sbjct: 139 STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSE-VQKEAARALANI 197
Query: 310 TAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGG 355
+G I+A++DAG + + LL + +KEA + N SGG
Sbjct: 198 ASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 124/275 (45%), Gaps = 45/275 (16%)
Query: 38 SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTN 97
S D++ Q EA ++ S S I+ ++ +G V V+ L D ++Q EAARAL N
Sbjct: 13 STDSETQKEAARDLAEIASG-PASAIKAIVDAGGVEVLVKLLTSTDS-EVQKEAARALAN 70
Query: 98 IASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGAL 157
IASG E K +D G V + VKLL S +V+++A AL N+A ++ G
Sbjct: 71 IASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAG-- 128
Query: 158 IPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDA 217
+ VL +L+ S D +V +A
Sbjct: 129 ----------------------------------------GVEVLVKLLTSTDSEVQKEA 148
Query: 218 CRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCI 277
RALA +A G ++ I+A+++AG LVKLL V A R + NI +G + I
Sbjct: 149 ARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAI 208
Query: 278 INCGALRYLLGLLIHNHNKSIKKEVCWIISNITAG 312
++ G + L LL ++ ++KE + NI +G
Sbjct: 209 VDAGGVEVLQKLLTSTDSE-VQKEAQRALENIKSG 242
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 112/223 (50%), Gaps = 5/223 (2%)
Query: 174 RTATWTLSNFCRGKPQPPFNQIRPA--LRVLAQLIRSNDEKVLTDACRALAYLADGTNDK 231
+ A L+ G P I A + VL +L+ S D +V +A RALA +A G ++
Sbjct: 20 KEAARDLAEIASG-PASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 78
Query: 232 IQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLI 291
I+A+++AG LVKLL V A R + NI +G D + I++ G + L+ LL
Sbjct: 79 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 138
Query: 292 HNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNA 351
++ ++KE ++NI +G E I+A++DAG + +V LL + +KEAA ++N
Sbjct: 139 STDSE-VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 197
Query: 352 TSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTVCLIGLENI 394
SG T IK +V G V+ ++ LENI
Sbjct: 198 ASGPTS-AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 92/169 (54%), Gaps = 2/169 (1%)
Query: 202 LAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALR 261
L +L+ S D + +A R LA +A G I+A+++AG LVKLL V A R
Sbjct: 7 LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 66
Query: 262 TIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVI 321
+ NI +G D + I++ G + L+ LL ++ ++KE ++NI +G E I+A++
Sbjct: 67 ALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSE-VQKEAARALANIASGPDEAIKAIV 125
Query: 322 DAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVK 370
DAG + +V LL + +KEAA ++N S G E IK +V G V+
Sbjct: 126 DAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPDEAIKAIVDAGGVE 173
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 95/169 (56%), Gaps = 3/169 (1%)
Query: 199 LRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTA 258
L + Q + S+D + A R + + N++IQAVI+AG P LV+LL + +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 259 ALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQ 318
AL + NI +G + Q Q +I+ GAL L+ LL + N+ I +E W +SNI +G EQIQ
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 319 AVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREG 367
AVIDAG + +V LL +EA W +SN SGG + K V+E
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEA 179
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 107/197 (54%), Gaps = 4/197 (2%)
Query: 29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQ 88
LP M + SDD + QL AT F ++LS D N I+ VI +G +P V+ L + LQ
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 89 FEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCR 148
EA AL+NIASG +E + ID GA+P V+LL+SP++ + ++A+WAL N+A +
Sbjct: 73 -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 149 DFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCR-GKPQPPFNQIRPALRVLAQLIR 207
V+ GAL P L +L +L+ A W LSN G Q + AL L QL
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 190
Query: 208 SNDEKVLTDACRALAYL 224
+EK+ +A AL L
Sbjct: 191 HENEKIQKEAQEALEKL 207
Score = 104 bits (260), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 103/206 (50%), Gaps = 14/206 (6%)
Query: 241 CPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKK 300
P++ + L +A R I++ + Q Q +I+ GAL L+ LL + N+ I +
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL-SSPNEQILQ 72
Query: 301 EVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQI 360
E W +SNI +G EQIQAVIDAG + +V LL +EA W +SN SGG +EQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 361 KHLVREGCVKXXXXXXXXXXXQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEA 420
+ ++ G + QI+ L L NI G N+ Q V+EA
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG------------NEQKQAVKEA 179
Query: 421 EGLEKIENLQSHDNNDIHEMSVKILE 446
LEK+E LQSH+N I + + + LE
Sbjct: 180 GALEKLEQLQSHENEKIQKEAQEALE 205
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 88/147 (59%), Gaps = 1/147 (0%)
Query: 198 ALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLT 257
AL L QL+ S +E++L +A AL+ +A G N++IQAVI+AG P LV+LL + +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 258 AALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQI 317
AL + NI +G + Q Q +I+ GAL L+ LL + N+ I +E W +SNI +G EQ
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQK 173
Query: 318 QAVIDAGLIGPIVNLLQDAEFGTKKEA 344
QAV +AG + + L +KEA
Sbjct: 174 QAVKEAGALEKLEQLQSHENEKIQKEA 200
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 21/164 (12%)
Query: 115 VPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHA------ 168
+P+ +LL V+E + LG +A + +IP L EL H
Sbjct: 374 LPLLKELLFHHEWVVKESGILVLGAIAEGCMQ---------GMIPYLPELIPHLIQCLSD 424
Query: 169 KLSMLRTAT-WTLSNFCRGK-PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLAD 226
K +++R+ T WTLS + QPP ++P + L + I ++++V AC A A L +
Sbjct: 425 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 484
Query: 227 GTNDKIQAVIEAGVCPRLVKLLG---HRSRLVLTAALRTIGNIV 267
++ + A + LV H++ L+L A+ T+ + V
Sbjct: 485 EACTELVPYL-AYILDTLVFAFSKYQHKNLLILYDAIGTLADSV 527
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 21/164 (12%)
Query: 115 VPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHA------ 168
+P+ +LL V+E + LG +A + +IP L EL H
Sbjct: 361 LPLLKELLFHHEWVVKESGILVLGAIAEGCMQ---------GMIPYLPELIPHLIQCLSD 411
Query: 169 KLSMLRTAT-WTLSNFCRGK-PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLAD 226
K +++R+ T WTLS + QPP ++P + L + I ++++V AC A A L +
Sbjct: 412 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 471
Query: 227 GTNDKIQAVIEAGVCPRLVKLLG---HRSRLVLTAALRTIGNIV 267
++ + A + LV H++ L+L A+ T+ + V
Sbjct: 472 EACTELVPYL-AYILDTLVFAFSKYQHKNLLILYDAIGTLADSV 514
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 21/164 (12%)
Query: 115 VPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHA------ 168
+P+ +LL V+E + LG +A + +IP L EL H
Sbjct: 399 LPLLKELLFHHEWVVKESGILVLGAIAEGCMQ---------GMIPYLPELIPHLIQCLSD 449
Query: 169 KLSMLRTAT-WTLSNFCRGK-PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLAD 226
K +++R+ T WTLS + QPP ++P + L + I ++++V AC A A L +
Sbjct: 450 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 509
Query: 227 GTNDKIQAVIEAGVCPRLVKLLG---HRSRLVLTAALRTIGNIV 267
++ + A + LV H++ L+L A+ T+ + V
Sbjct: 510 EACTELVPYL-AYILDTLVFAFSKYQHKNLLILYDAIGTLADSV 552
>pdb|1OYZ|A Chain A, X-Ray Structure Of Yiba_ecoli Northeast Structural
Genomics Consortium Target Et31
Length = 280
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 19/117 (16%)
Query: 73 PRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQ 132
P+ VE Q Q A TN+ T+ V D +P+ + LL P+ DVR
Sbjct: 127 PKIVE--------QSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNW 178
Query: 133 AVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSML-----RTATWTLSNFC 184
A +A+ D+S RD + L + NE ++ + R LS C
Sbjct: 179 AAFAININKYDNSDIRD------CFVEXLQDKNEEVRIEAIIGLSYRKDKRVLSVLC 229
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 21/164 (12%)
Query: 115 VPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHA------ 168
+P+ +LL V+E + LG +A QG IP L EL H
Sbjct: 399 LPLLKELLFHHEWVVKESGILVLGAIAEGCX--------QGX-IPYLPELIPHLIQCLSD 449
Query: 169 KLSMLRTAT-WTLSNFCRGK-PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLAD 226
K +++R+ T WTLS + QPP ++P L + I ++++V AC A A L +
Sbjct: 450 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLXTELLKRILDSNKRVQEAACSAFATLEE 509
Query: 227 GTNDKIQAVIEAGVCPRLVKLLG---HRSRLVLTAALRTIGNIV 267
++ + A + LV H++ L+L A+ T+ + V
Sbjct: 510 EACTELVPYL-AYILDTLVFAFSKYQHKNLLILYDAIGTLADSV 552
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 105/264 (39%), Gaps = 13/264 (4%)
Query: 73 PRFVEFLMREDYPQLQFEAAR----ALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDD 128
P+ V ++R E AR L N+ S E G +P VK+L SP D
Sbjct: 55 PQMVSAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDS 113
Query: 129 VREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP 188
V A+ L N+ + V G L ++A LN+ + L T L G
Sbjct: 114 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQ 172
Query: 189 QPPFNQIRP-ALRVLAQLIRS-NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVK 246
+ + + L ++R+ EK+L R L L+ +++K A++EAG L
Sbjct: 173 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGL 231
Query: 247 LLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWII 306
L S+ ++ L T+ N+ Q G L LLG + + ++ I+
Sbjct: 232 HLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGIL 287
Query: 307 SNITAGNREQIQAVIDAGLIGPIV 330
SN+T N + V G I +V
Sbjct: 288 SNLTCNNYKNKMMVCQVGGIEALV 311
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 234 AVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHN 293
A+ ++G P LVK+LG VL A+ T+ N++ + + G L+ ++ LL
Sbjct: 93 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 152
Query: 294 HNK--SIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEF 338
+ K +I + I++ GN+E ++ +G +VN+++ +
Sbjct: 153 NVKFLAITTDCLQILA---YGNQESKLIILASGGPQALVNIMRTYTY 196
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 68 QSGVVPRFVEFLMREDY----------PQLQFEAARALTNIASGTS----------ENTK 107
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 392 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 451
Query: 108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 143
V +P+FV+LL SP ++++ A L +A D
Sbjct: 452 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 104/266 (39%), Gaps = 17/266 (6%)
Query: 73 PRFVEFLMREDYPQLQFEAAR----ALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDD 128
P+ V ++R E AR L N+ S E G +P VK+L SP D
Sbjct: 61 PQMVSAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDS 119
Query: 129 VREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP 188
V A+ L N+ + V G L ++A LN+ + L T L G
Sbjct: 120 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQ 178
Query: 189 QPPFNQIRP-ALRVLAQLIRS-NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVK 246
+ + + L ++R+ EK+L R L L+ +++K A++EAG L
Sbjct: 179 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGL 237
Query: 247 LLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVC--W 304
L S+ ++ L T+ N+ Q G L LLG + I C
Sbjct: 238 HLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG------SDDINVVTCAAG 291
Query: 305 IISNITAGNREQIQAVIDAGLIGPIV 330
I+SN+T N + V G I +V
Sbjct: 292 ILSNLTCNNYKNKMMVCQVGGIEALV 317
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 68 QSGVVPRFVEFLMREDY----------PQLQFEAARALTNIASGTS----------ENTK 107
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 398 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 457
Query: 108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 143
V +P+FV+LL SP ++++ A L +A D
Sbjct: 458 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 493
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 234 AVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHN 293
A+ ++G P LVK+LG VL A+ T+ N++ + + G L+ ++ LL
Sbjct: 99 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 158
Query: 294 HNK--SIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEF 338
+ K +I + I++ GN+E ++ +G +VN+++ +
Sbjct: 159 NVKFLAITTDCLQILA---YGNQESKLIILASGGPQALVNIMRTYTY 202
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 104/266 (39%), Gaps = 17/266 (6%)
Query: 73 PRFVEFLMREDYPQLQFEAAR----ALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDD 128
P+ V ++R E AR L N+ S E G +P VK+L SP D
Sbjct: 59 PQMVSAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDS 117
Query: 129 VREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP 188
V A+ L N+ + V G L ++A LN+ + L T L G
Sbjct: 118 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQ 176
Query: 189 QPPFNQIRP-ALRVLAQLIRS-NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVK 246
+ + + L ++R+ EK+L R L L+ +++K A++EAG L
Sbjct: 177 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGL 235
Query: 247 LLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVC--W 304
L S+ ++ L T+ N+ Q G L LLG + I C
Sbjct: 236 HLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG------SDDINVVTCAAG 289
Query: 305 IISNITAGNREQIQAVIDAGLIGPIV 330
I+SN+T N + V G I +V
Sbjct: 290 ILSNLTCNNYKNKMMVCQVGGIEALV 315
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 68 QSGVVPRFVEFLMREDY----------PQLQFEAARALTNIASGTS----------ENTK 107
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 396 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 455
Query: 108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 143
V +P+FV+LL SP ++++ A L +A D
Sbjct: 456 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 491
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 234 AVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHN 293
A+ ++G P LVK+LG VL A+ T+ N++ + + G L+ ++ LL
Sbjct: 97 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 156
Query: 294 HNK--SIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEF 338
+ K +I + I++ GN+E ++ +G +VN+++ +
Sbjct: 157 NVKFLAITTDCLQILA---YGNQESKLIILASGGPQALVNIMRTYTY 200
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 104/266 (39%), Gaps = 17/266 (6%)
Query: 73 PRFVEFLMREDYPQLQFEAAR----ALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDD 128
P+ V ++R E AR L N+ S E G +P VK+L SP D
Sbjct: 62 PQMVSAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDS 120
Query: 129 VREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP 188
V A+ L N+ + V G L ++A LN+ + L T L G
Sbjct: 121 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQ 179
Query: 189 QPPFNQIRP-ALRVLAQLIRS-NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVK 246
+ + + L ++R+ EK+L R L L+ +++K A++EAG L
Sbjct: 180 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGL 238
Query: 247 LLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVC--W 304
L S+ ++ L T+ N+ Q G L LLG + I C
Sbjct: 239 HLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG------SDDINVVTCAAG 292
Query: 305 IISNITAGNREQIQAVIDAGLIGPIV 330
I+SN+T N + V G I +V
Sbjct: 293 ILSNLTCNNYKNKMMVCQVGGIEALV 318
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 68 QSGVVPRFVEFLMREDY----------PQLQFEAARALTNIASGTS----------ENTK 107
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 399 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 458
Query: 108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 143
V +P+FV+LL SP ++++ A L +A D
Sbjct: 459 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 494
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 234 AVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHN 293
A+ ++G P LVK+LG VL A+ T+ N++ + + G L+ ++ LL
Sbjct: 100 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 159
Query: 294 HNK--SIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEF 338
+ K +I + I++ GN+E ++ +G +VN+++ +
Sbjct: 160 NVKFLAITTDCLQILA---YGNQESKLIILASGGPQALVNIMRTYTY 203
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 104/266 (39%), Gaps = 17/266 (6%)
Query: 73 PRFVEFLMREDYPQLQFEAAR----ALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDD 128
P+ V ++R E AR L N+ S E G +P VK+L SP D
Sbjct: 60 PQMVSAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDS 118
Query: 129 VREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP 188
V A+ L N+ + V G L ++A LN+ + L T L G
Sbjct: 119 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQ 177
Query: 189 QPPFNQIRP-ALRVLAQLIRS-NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVK 246
+ + + L ++R+ EK+L R L L+ +++K A++EAG L
Sbjct: 178 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGL 236
Query: 247 LLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVC--W 304
L S+ ++ L T+ N+ Q G L LLG + I C
Sbjct: 237 HLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG------SDDINVVTCAAG 290
Query: 305 IISNITAGNREQIQAVIDAGLIGPIV 330
I+SN+T N + V G I +V
Sbjct: 291 ILSNLTCNNYKNKMMVCQVGGIEALV 316
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 68 QSGVVPRFVEFLMREDY----------PQLQFEAARALTNIASGTS----------ENTK 107
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 397 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 456
Query: 108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 143
V +P+FV+LL SP ++++ A L +A D
Sbjct: 457 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 492
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 234 AVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHN 293
A+ ++G P LVK+LG VL A+ T+ N++ + + G L+ ++ LL
Sbjct: 98 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 157
Query: 294 HNK--SIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEF 338
+ K +I + I++ GN+E ++ +G +VN+++ +
Sbjct: 158 NVKFLAITTDCLQILA---YGNQESKLIILASGGPQALVNIMRTYTY 201
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 104/266 (39%), Gaps = 17/266 (6%)
Query: 73 PRFVEFLMREDYPQLQFEAAR----ALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDD 128
P+ V ++R E AR L N+ S E G +P VK+L SP D
Sbjct: 60 PQMVSAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDS 118
Query: 129 VREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP 188
V A+ L N+ + V G L ++A LN+ + L T L G
Sbjct: 119 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQ 177
Query: 189 QPPFNQIRP-ALRVLAQLIRS-NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVK 246
+ + + L ++R+ EK+L R L L+ +++K A++EAG L
Sbjct: 178 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGL 236
Query: 247 LLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVC--W 304
L S+ ++ L T+ N+ Q G L LLG + I C
Sbjct: 237 HLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG------SDDINVVTCAAG 290
Query: 305 IISNITAGNREQIQAVIDAGLIGPIV 330
I+SN+T N + V G I +V
Sbjct: 291 ILSNLTCNNYKNKMMVCQVGGIEALV 316
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 68 QSGVVPRFVEFLMREDY----------PQLQFEAARALTNIASGTS----------ENTK 107
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 397 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 456
Query: 108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 143
V +P+FV+LL SP ++++ A L +A D
Sbjct: 457 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 492
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 234 AVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHN 293
A+ ++G P LVK+LG VL A+ T+ N++ + + G L+ ++ LL
Sbjct: 98 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 157
Query: 294 HNK--SIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEF 338
+ K +I + I++ GN+E ++ +G +VN+++ +
Sbjct: 158 NVKFLAITTDCLQILA---YGNQESKLIILASGGPQALVNIMRTYTY 201
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 105/264 (39%), Gaps = 13/264 (4%)
Query: 73 PRFVEFLMREDYPQLQFEAAR----ALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDD 128
P+ V ++R E AR L N+ S E G +P VK+L SP D
Sbjct: 43 PQMVSAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDS 101
Query: 129 VREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP 188
V A+ L N+ + V G L ++A LN+ + L T L G
Sbjct: 102 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQ 160
Query: 189 QPPFNQIRP-ALRVLAQLIRS-NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVK 246
+ + + L ++R+ EK+L R L L+ +++K A++EAG L
Sbjct: 161 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGL 219
Query: 247 LLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWII 306
L S+ ++ L T+ N+ Q G L LLG + + ++ I+
Sbjct: 220 HLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGIL 275
Query: 307 SNITAGNREQIQAVIDAGLIGPIV 330
SN+T N + V G I +V
Sbjct: 276 SNLTCNNYKNKMMVCQVGGIEALV 299
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 68 QSGVVPRFVEFLMREDY----------PQLQFEAARALTNIASGTS----------ENTK 107
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 380 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 439
Query: 108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 143
V +P+FV+LL SP ++++ A L +A D
Sbjct: 440 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 475
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 234 AVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHN 293
A+ ++G P LVK+LG VL A+ T+ N++ + + G L+ ++ LL
Sbjct: 81 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 140
Query: 294 HNK--SIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEF 338
+ K +I + I++ GN+E ++ +G +VN+++ +
Sbjct: 141 NVKFLAITTDCLQILA---YGNQESKLIILASGGPQALVNIMRTYTY 184
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 104/266 (39%), Gaps = 17/266 (6%)
Query: 73 PRFVEFLMREDYPQLQFEAAR----ALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDD 128
P+ V ++R E AR L N+ S E G +P VK+L SP D
Sbjct: 56 PQMVSAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDS 114
Query: 129 VREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP 188
V A+ L N+ + V G L ++A LN+ + L T L G
Sbjct: 115 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQ 173
Query: 189 QPPFNQIRP-ALRVLAQLIRS-NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVK 246
+ + + L ++R+ EK+L R L L+ +++K A++EAG L
Sbjct: 174 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGL 232
Query: 247 LLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVC--W 304
L S+ ++ L T+ N+ Q G L LLG + I C
Sbjct: 233 HLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG------SDDINVVTCAAG 286
Query: 305 IISNITAGNREQIQAVIDAGLIGPIV 330
I+SN+T N + V G I +V
Sbjct: 287 ILSNLTCNNYKNKMMVCQVGGIEALV 312
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 68 QSGVVPRFVEFLMREDY----------PQLQFEAARALTNIASGTS----------ENTK 107
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 393 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 452
Query: 108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 143
V +P+FV+LL SP ++++ A L +A D
Sbjct: 453 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 234 AVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHN 293
A+ ++G P LVK+LG VL A+ T+ N++ + + G L+ ++ LL
Sbjct: 94 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 153
Query: 294 HNK--SIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEF 338
+ K +I + I++ GN+E ++ +G +VN+++ +
Sbjct: 154 NVKFLAITTDCLQILA---YGNQESKLIILASGGPQALVNIMRTYTY 197
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 104/266 (39%), Gaps = 17/266 (6%)
Query: 73 PRFVEFLMREDYPQLQFEAAR----ALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDD 128
P+ V ++R E AR L N+ S E G +P VK+L SP D
Sbjct: 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDS 116
Query: 129 VREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP 188
V A+ L N+ + V G L ++A LN+ + L T L G
Sbjct: 117 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQ 175
Query: 189 QPPFNQIRP-ALRVLAQLIRS-NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVK 246
+ + + L ++R+ EK+L R L L+ +++K A++EAG L
Sbjct: 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGL 234
Query: 247 LLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCW-- 304
L S+ ++ L T+ N+ Q G L LLG + I C
Sbjct: 235 HLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG------SDDINVVTCAAG 288
Query: 305 IISNITAGNREQIQAVIDAGLIGPIV 330
I+SN+T N + V G I +V
Sbjct: 289 ILSNLTCNNYKNKMMVCQVGGIEALV 314
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 68 QSGVVPRFVEFLMREDY----------PQLQFEAARALTNIASGTS----------ENTK 107
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 395 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 454
Query: 108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 143
V +P+FV+LL SP ++++ A L +A D
Sbjct: 455 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 490
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 234 AVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHN 293
A+ ++G P LVK+LG VL A+ T+ N++ + + G L+ ++ LL
Sbjct: 96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 155
Query: 294 HNK--SIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEF 338
+ K +I + I++ GN+E ++ +G +VN+++ +
Sbjct: 156 NVKFLAITTDCLQILA---YGNQESKLIILASGGPQALVNIMRTYTY 199
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 105/264 (39%), Gaps = 13/264 (4%)
Query: 73 PRFVEFLMREDYPQLQFEAAR----ALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDD 128
P+ V ++R E AR L N+ S E G +P VK+L SP D
Sbjct: 45 PQMVSAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDS 103
Query: 129 VREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP 188
V A+ L N+ + V G L ++A LN+ + L T L G
Sbjct: 104 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQ 162
Query: 189 QPPFNQIRP-ALRVLAQLIRS-NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVK 246
+ + + L ++R+ EK+L R L L+ +++K A++EAG L
Sbjct: 163 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGL 221
Query: 247 LLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWII 306
L S+ ++ L T+ N+ Q G L LLG + + ++ I+
Sbjct: 222 HLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGIL 277
Query: 307 SNITAGNREQIQAVIDAGLIGPIV 330
SN+T N + V G I +V
Sbjct: 278 SNLTCNNYKNKMMVCQVGGIEALV 301
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 68 QSGVVPRFVEFLMREDY----------PQLQFEAARALTNIASGTS----------ENTK 107
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 382 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 441
Query: 108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 143
V +P+FV+LL SP ++++ A L +A D
Sbjct: 442 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 477
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 234 AVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHN 293
A+ ++G P LVK+LG VL A+ T+ N++ + + G L+ ++ LL
Sbjct: 83 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 142
Query: 294 HNK--SIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEF 338
+ K +I + I++ GN+E ++ +G +VN+++ +
Sbjct: 143 NVKFLAITTDCLQILA---YGNQESKLIILASGGPQALVNIMRTYTY 186
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 105/264 (39%), Gaps = 13/264 (4%)
Query: 73 PRFVEFLMREDYPQLQFEAAR----ALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDD 128
P+ V ++R E AR L N+ S E G +P VK+L SP D
Sbjct: 56 PQMVSAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDS 114
Query: 129 VREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP 188
V A+ L N+ + V G L ++A LN+ + L T L G
Sbjct: 115 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQ 173
Query: 189 QPPFNQIRP-ALRVLAQLIRS-NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVK 246
+ + + L ++R+ EK+L R L L+ +++K A++EAG L
Sbjct: 174 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGL 232
Query: 247 LLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWII 306
L S+ ++ L T+ N+ Q G L LLG + + ++ I+
Sbjct: 233 HLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGIL 288
Query: 307 SNITAGNREQIQAVIDAGLIGPIV 330
SN+T N + V G I +V
Sbjct: 289 SNLTCNNYKNKMMVCQVGGIEALV 312
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 68 QSGVVPRFVEFLMREDY----------PQLQFEAARALTNIASGTS----------ENTK 107
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 393 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 452
Query: 108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 143
V +P+FV+LL SP ++++ A L +A D
Sbjct: 453 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 234 AVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHN 293
A+ ++G P LVK+LG VL A+ T+ N++ + + G L+ ++ LL
Sbjct: 94 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 153
Query: 294 HNK--SIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEF 338
+ K +I + I++ GN+E ++ +G +VN+++ +
Sbjct: 154 NVKFLAITTDCLQILA---YGNQESKLIILASGGPQALVNIMRTYTY 197
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 105/264 (39%), Gaps = 13/264 (4%)
Query: 73 PRFVEFLMREDYPQLQFEAAR----ALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDD 128
P+ V ++R E AR L N+ S E G +P VK+L SP D
Sbjct: 47 PQMVSAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDS 105
Query: 129 VREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP 188
V A+ L N+ + V G L ++A LN+ + L T L G
Sbjct: 106 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQ 164
Query: 189 QPPFNQIRP-ALRVLAQLIRS-NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVK 246
+ + + L ++R+ EK+L R L L+ +++K A++EAG L
Sbjct: 165 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGL 223
Query: 247 LLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWII 306
L S+ ++ L T+ N+ Q G L LLG + + ++ I+
Sbjct: 224 HLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGIL 279
Query: 307 SNITAGNREQIQAVIDAGLIGPIV 330
SN+T N + V G I +V
Sbjct: 280 SNLTCNNYKNKMMVCQVGGIEALV 303
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 68 QSGVVPRFVEFLMREDY----------PQLQFEAARALTNIASGTS----------ENTK 107
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 384 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 443
Query: 108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 143
V +P+FV+LL SP ++++ A L +A D
Sbjct: 444 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 479
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 234 AVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHN 293
A+ ++G P LVK+LG VL A+ T+ N++ + + G L+ ++ LL
Sbjct: 85 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 144
Query: 294 HNK--SIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEF 338
+ K +I + I++ GN+E ++ +G +VN+++ +
Sbjct: 145 NVKFLAITTDCLQILA---YGNQESKLIILASGGPQALVNIMRTYTY 188
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 105/264 (39%), Gaps = 13/264 (4%)
Query: 73 PRFVEFLMREDYPQLQFEAAR----ALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDD 128
P+ V ++R E AR L N+ S E G +P VK+L SP D
Sbjct: 43 PQMVSAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDS 101
Query: 129 VREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP 188
V A+ L N+ + V G L ++A LN+ + L T L G
Sbjct: 102 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQ 160
Query: 189 QPPFNQIRP-ALRVLAQLIRS-NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVK 246
+ + + L ++R+ EK+L R L L+ +++K A++EAG L
Sbjct: 161 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGL 219
Query: 247 LLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWII 306
L S+ ++ L T+ N+ Q G L LLG + + ++ I+
Sbjct: 220 HLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLG----SDDINVVTCAAGIL 275
Query: 307 SNITAGNREQIQAVIDAGLIGPIV 330
SN+T N + V G I +V
Sbjct: 276 SNLTCNNYKNKMMVCQVGGIEALV 299
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 68 QSGVVPRFVEFLMREDY----------PQLQFEAARALTNIASGTS----------ENTK 107
+ G +PR V+ L+R Q QF + I G + N
Sbjct: 380 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 439
Query: 108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 143
V +P+FV+LL SP ++++ A L +A D
Sbjct: 440 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 475
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 234 AVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHN 293
A+ ++G P LVK+LG VL A+ T+ N++ + + G L+ ++ LL
Sbjct: 81 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 140
Query: 294 HNK--SIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEF 338
+ K +I + I++ GN+E ++ +G +VN+++ +
Sbjct: 141 NVKFLAITTDCLQILA---YGNQESKLIILASGGPQALVNIMRTYTY 184
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 8/114 (7%)
Query: 91 AARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDF 150
A A +I G + + H A+P + L+ S V+E W +G +A + D
Sbjct: 389 AVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDP 448
Query: 151 VLS-QGALIPLLAELNEHAKLSMLRTATWTLSN----FCRGKPQPPFNQIRPAL 199
G + L L +H K++ +WT+ N P P +N PAL
Sbjct: 449 QQHLPGVVQACLIGLQDHPKVA--TNCSWTIINLVEQLAEATPSPIYN-FYPAL 499
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 8/114 (7%)
Query: 91 AARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDF 150
A A +I G + + H A+P + L+ S V+E W +G +A + D
Sbjct: 389 AVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDP 448
Query: 151 VLS-QGALIPLLAELNEHAKLSMLRTATWTLSN----FCRGKPQPPFNQIRPAL 199
G + L L +H K++ +WT+ N P P +N PAL
Sbjct: 449 QQHLPGVVQACLIGLQDHPKVA--TNCSWTIINLVEQLAEATPSPIYN-FYPAL 499
>pdb|2DB0|A Chain A, Crystal Structure Of Ph0542
pdb|2DB0|B Chain B, Crystal Structure Of Ph0542
Length = 253
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 144 SSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLA 203
+S RDF + +L+ N KL+ L NF + F + P L +
Sbjct: 143 ASIVRDF-------MSMLSSKNREDKLTAL--------NFIEAMGENSFKYVNPFLPRII 187
Query: 204 QLIRSNDEKVLTDACRALAYLADGTNDKIQAVI 236
L+ DE V A AL +LA NDK++ V+
Sbjct: 188 NLLHDGDEIVRASAVEALVHLA-TLNDKLRKVV 219
>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm
pdb|3T7U|B Chain B, A New Crytal Structure Of Apc-Arm
Length = 378
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 98/260 (37%), Gaps = 56/260 (21%)
Query: 87 LQFEAARALTNIASGTSENTKVAID-HGAVPIFVKLLASPSDDVREQAVWALGNVAG--- 142
L+ A ALTN+ G N G + V L S S+D+++ L N++
Sbjct: 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD 159
Query: 143 -DSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRV 201
+S + V S AL+ E+ + + L + +A W LS C
Sbjct: 160 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK------------- 206
Query: 202 LAQLIRSNDEKVLTDACR---ALAYLADGTNDKIQ----AVIEAGVCPRLVKLLGHRSRL 254
D C ALA+L + Q A+IE+G
Sbjct: 207 -------------ADICAVDGALAFLVGTLTYRSQTNTLAIIESG--------------- 238
Query: 255 VLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNR 314
LR + +++ ++ Q + L+ LL L +H+ +I C + N++A N
Sbjct: 239 --GGILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNP 295
Query: 315 EQIQAVIDAGLIGPIVNLLQ 334
+ +A+ D G + + NL+
Sbjct: 296 KDQEALWDMGAVSMLKNLIH 315
>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
pdb|3QHE|C Chain C, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
Length = 337
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 98/260 (37%), Gaps = 56/260 (21%)
Query: 87 LQFEAARALTNIASGTSENTKVAID-HGAVPIFVKLLASPSDDVREQAVWALGNVAG--- 142
L+ A ALTN+ G N G + V L S S+D+++ L N++
Sbjct: 102 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD 161
Query: 143 -DSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRV 201
+S + V S AL+ E+ + + L + +A W LS C
Sbjct: 162 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK------------- 208
Query: 202 LAQLIRSNDEKVLTDACR---ALAYLADGTNDKIQ----AVIEAGVCPRLVKLLGHRSRL 254
D C ALA+L + Q A+IE+G
Sbjct: 209 -------------ADICAVDGALAFLVGTLTYRSQTNTLAIIESG--------------- 240
Query: 255 VLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNR 314
LR + +++ ++ Q + L+ LL L +H+ +I C + N++A N
Sbjct: 241 --GGILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNP 297
Query: 315 EQIQAVIDAGLIGPIVNLLQ 334
+ +A+ D G + + NL+
Sbjct: 298 KDQEALWDMGAVSMLKNLIH 317
>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|B Chain B, Crytal Structure Of Apc Complexed With Asef
Length = 458
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 98/260 (37%), Gaps = 56/260 (21%)
Query: 87 LQFEAARALTNIASGTSENTKVAID-HGAVPIFVKLLASPSDDVREQAVWALGNVAG--- 142
L+ A ALTN+ G N G + V L S S+D+++ L N++
Sbjct: 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD 275
Query: 143 -DSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRV 201
+S + V S AL+ E+ + + L + +A W LS C
Sbjct: 276 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK------------- 322
Query: 202 LAQLIRSNDEKVLTDACR---ALAYLADGTNDKIQ----AVIEAGVCPRLVKLLGHRSRL 254
D C ALA+L + Q A+IE+G
Sbjct: 323 -------------ADICAVDGALAFLVGTLTYRSQTNTLAIIESG--------------- 354
Query: 255 VLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNR 314
LR + +++ ++ Q + L+ LL L +H+ +I C + N++A N
Sbjct: 355 --GGILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNP 411
Query: 315 EQIQAVIDAGLIGPIVNLLQ 334
+ +A+ D G + + NL+
Sbjct: 412 KDQEALWDMGAVSMLKNLIH 431
>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|B Chain B, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|C Chain C, Crystal Structure Of Apc Complexed With Asef
Length = 354
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 98/260 (37%), Gaps = 56/260 (21%)
Query: 87 LQFEAARALTNIASGTSENTKVAID-HGAVPIFVKLLASPSDDVREQAVWALGNVAG--- 142
L+ A ALTN+ G N G + V L S S+D+++ L N++
Sbjct: 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD 159
Query: 143 -DSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRV 201
+S + V S AL+ E+ + + L + +A W LS C
Sbjct: 160 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK------------- 206
Query: 202 LAQLIRSNDEKVLTDACR---ALAYLADGTNDKIQ----AVIEAGVCPRLVKLLGHRSRL 254
D C ALA+L + Q A+IE+G
Sbjct: 207 -------------ADICAVDGALAFLVGTLTYRSQTNTLAIIESG--------------- 238
Query: 255 VLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNR 314
LR + +++ ++ Q + L+ LL L +H+ +I C + N++A N
Sbjct: 239 --GGILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNP 295
Query: 315 EQIQAVIDAGLIGPIVNLLQ 334
+ +A+ D G + + NL+
Sbjct: 296 KDQEALWDMGAVSMLKNLIH 315
>pdb|3AU3|A Chain A, Crystal Structure Of Armadillo Repeat Domain Of Apc
Length = 344
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 97/260 (37%), Gaps = 56/260 (21%)
Query: 87 LQFEAARALTNIASGTSEN-TKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAG--- 142
L+ A ALTN+ G N + G V L S S+D+++ L N++
Sbjct: 109 LRRYAGXALTNLTFGDVANKATLCSXKGCXRALVAQLKSESEDLQQVIASVLRNLSWRAD 168
Query: 143 -DSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRV 201
+S + V S AL E+ + + L + +A W LS C
Sbjct: 169 VNSKKTLREVGSVKALXECALEVKKESTLKSVLSALWNLSAHCTENK------------- 215
Query: 202 LAQLIRSNDEKVLTDACR---ALAYLADGTNDKIQ----AVIEAGVCPRLVKLLGHRSRL 254
D C ALA+L + Q A+IE+G
Sbjct: 216 -------------ADICAVDGALAFLVGTLTYRSQTNTLAIIESG--------------- 247
Query: 255 VLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNR 314
LR + +++ ++ Q + L+ LL L +H+ +I C + N++A N
Sbjct: 248 --GGILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNP 304
Query: 315 EQIQAVIDAGLIGPIVNLLQ 334
+ +A+ D G + + NL+
Sbjct: 305 KDQEALWDXGAVSXLKNLIH 324
>pdb|1LTL|A Chain A, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|B Chain B, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|C Chain C, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|D Chain D, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|E Chain E, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|F Chain F, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
Length = 279
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 61 SPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIF-- 118
S ++ V +S + +F EF +DY FEA N+ S + +D+ + +F
Sbjct: 4 SRMKTVDKSKTLTKFEEFFSLQDYKDRVFEAIEKYPNVRS-------IEVDYLDLEMFDP 56
Query: 119 --VKLLASPSDDVREQAVWALGNV 140
LL DDV A A+ N+
Sbjct: 57 DLADLLIEKPDDVIRAAQQAIRNI 80
>pdb|3NMW|A Chain A, Crytal Structure Of Armadillo Repeats Domain Of Apc
pdb|3NMW|B Chain B, Crytal Structure Of Armadillo Repeats Domain Of Apc
Length = 354
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 97/260 (37%), Gaps = 56/260 (21%)
Query: 87 LQFEAARALTNIASGTSEN-TKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAG--- 142
L+ A ALTN+ G N + G V L S S+D+++ L N++
Sbjct: 100 LRRYAGXALTNLTFGDVANKATLCSXKGCXRALVAQLKSESEDLQQVIASVLRNLSWRAD 159
Query: 143 -DSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRV 201
+S + V S AL E+ + + L + +A W LS C
Sbjct: 160 VNSKKTLREVGSVKALXECALEVKKESTLKSVLSALWNLSAHCTENK------------- 206
Query: 202 LAQLIRSNDEKVLTDACR---ALAYLADGTNDKIQ----AVIEAGVCPRLVKLLGHRSRL 254
D C ALA+L + Q A+IE+G
Sbjct: 207 -------------ADICAVDGALAFLVGTLTYRSQTNTLAIIESG--------------- 238
Query: 255 VLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNR 314
LR + +++ ++ Q + L+ LL L +H+ +I C + N++A N
Sbjct: 239 --GGILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNP 295
Query: 315 EQIQAVIDAGLIGPIVNLLQ 334
+ +A+ D G + + NL+
Sbjct: 296 KDQEALWDXGAVSXLKNLIH 315
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 113 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNE 166
G +P VK+L SP D V A+ L N+ + V G L ++A LN+
Sbjct: 97 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 150
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
Query: 73 PRFVEFLMREDYPQLQFEAAR----ALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDD 128
P+ V ++R E AR L N+ S E G +P VK+L SP D
Sbjct: 54 PQMVSAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDS 112
Query: 129 VREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNE 166
V A+ L N+ + V G L ++A LN+
Sbjct: 113 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 150
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 68 QSGVVPRFVEFLMREDY----------PQLQF----------EAARALTNIASGTSENTK 107
+ G +PR V+ L+R Q QF E +I + N
Sbjct: 337 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRXEEIVEGCTGALHILARDVHNRI 396
Query: 108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 143
V +P+FV+LL SP ++++ A L +A D
Sbjct: 397 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 432
>pdb|1S58|A Chain A, The Structure Of B19 Parvovirus Capsid
Length = 554
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 91 AARALTNIASGTSENTKVAIDHGAV 115
A +ALT +++GTS+NT++++ G V
Sbjct: 309 AGKALTGLSTGTSQNTRISLRPGPV 333
>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-Cadherin
pdb|3L6Y|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|C Chain C, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|E Chain E, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
Length = 584
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 72 VPRFVEFLMREDYP--QLQFEAARALTNIASGTSENTKVAIDH-GAVPIFVKLLASPSD- 127
+P V L D+P ++ A AL NI+ G ++ K+AI + VP V+LL D
Sbjct: 92 IPVLVGLL---DHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDM 148
Query: 128 DVREQAVWALGNVAGDSS 145
D+ E L N++ S
Sbjct: 149 DLTEVITGTLWNLSSHDS 166
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 56/285 (19%), Positives = 105/285 (36%), Gaps = 53/285 (18%)
Query: 73 PRFVEFLMREDYPQLQFEAARALTNIASGTSENTK---VAIDHGAVPIFVKLLASPSDDV 129
P+ V ++R E AR + S + + G +P V +L SP D V
Sbjct: 191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSV 250
Query: 130 REQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQ 189
A+ L N+ + V G L ++A LN
Sbjct: 251 LFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN------------------------ 286
Query: 190 PPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLG 249
+ ++ LA + TD + LAY G + ++ +G LV ++
Sbjct: 287 ------KTNVKFLA---------ITTDCLQILAY---GNQESKLIILASGGPQALVNIMR 328
Query: 250 HRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNI 309
+ L + +++ I+ G ++ L GL + + ++ + + W + N+
Sbjct: 329 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQAL-GLHLTDPSQRLVQNCLWTLRNL 387
Query: 310 T--AGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNAT 352
+ A +E ++ GL+G +V LL + AA ++SN T
Sbjct: 388 SDAATKQEGME-----GLLGTLVQLLGSDDINVVTCAAGILSNLT 427
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 68 QSGVVPRFVEFLMREDY----------PQLQF----------EAARALTNIASGTSENTK 107
+ G +PR V+ L+R Q QF EA +I + N
Sbjct: 528 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRI 587
Query: 108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 143
V +P+FV+LL SP ++++ A L +A D
Sbjct: 588 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 623
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 64 EKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLA 123
E I V+P E + D+ + + A A +I G N + A+P ++L+
Sbjct: 360 EDDIVPHVLPFIKEHIKNPDW-RYRDAAVMAFGSILEGPEPNQLKPLVIQAMPTLIELMK 418
Query: 124 SPSDDVREQAVWALGNV 140
PS VR+ W +G +
Sbjct: 419 DPSVVVRDTTAWTVGRI 435
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 64 EKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLA 123
E I V+P E + D+ + + A A I G + + A+P ++L+
Sbjct: 360 EDDIVPHVLPFIKEHIKNPDW-RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK 418
Query: 124 SPSDDVREQAVWALGNV 140
PS VR+ A W +G +
Sbjct: 419 DPSVVVRDTAAWTVGRI 435
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 442
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 64 EKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLA 123
E I V+P E + D+ + + A A I G + + A+P ++L+
Sbjct: 360 EDDIVPHVLPFIKEHIKNPDW-RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK 418
Query: 124 SPSDDVREQAVWALGNV 140
PS VR+ A W +G +
Sbjct: 419 DPSVVVRDTAAWTVGRI 435
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 114 AVPIFVKLLASPSDDVREQAVWALGNV 140
A+P ++L+ PS VR+ A W +G +
Sbjct: 284 AMPTLIELMKDPSVVVRDTAAWTVGRI 310
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 114 AVPIFVKLLASPSDDVREQAVWALGNV 140
A+P ++L+ PS VR+ A W +G +
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRI 435
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 114 AVPIFVKLLASPSDDVREQAVWALGNV 140
A+P ++L+ PS VR+ A W +G +
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRI 435
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,339,436
Number of Sequences: 62578
Number of extensions: 510683
Number of successful extensions: 2088
Number of sequences better than 100.0: 80
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1318
Number of HSP's gapped (non-prelim): 164
length of query: 482
length of database: 14,973,337
effective HSP length: 103
effective length of query: 379
effective length of database: 8,527,803
effective search space: 3232037337
effective search space used: 3232037337
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)