Query 043116
Match_columns 482
No_of_seqs 316 out of 2427
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 13:01:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043116.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043116hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0166 Karyopherin (importin) 100.0 5.6E-60 1.2E-64 436.4 46.4 424 29-456 68-492 (514)
2 COG5064 SRP1 Karyopherin (impo 100.0 2E-58 4.4E-63 394.6 33.4 427 26-454 70-500 (526)
3 KOG0166 Karyopherin (importin) 100.0 2.9E-46 6.3E-51 345.6 31.2 369 26-398 108-488 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 9.3E-46 2E-50 317.0 22.5 370 23-396 110-496 (526)
5 PLN03200 cellulose synthase-in 100.0 1.7E-39 3.6E-44 343.6 41.4 430 24-475 186-674 (2102)
6 PLN03200 cellulose synthase-in 100.0 4.1E-37 8.8E-42 325.6 46.0 419 24-452 401-862 (2102)
7 KOG4224 Armadillo repeat prote 100.0 1.9E-31 4.2E-36 231.1 24.4 362 28-399 86-449 (550)
8 KOG4224 Armadillo repeat prote 100.0 1.6E-30 3.4E-35 225.5 26.1 365 22-397 121-494 (550)
9 PF05804 KAP: Kinesin-associat 100.0 4.1E-26 9E-31 224.2 36.1 377 10-402 273-655 (708)
10 PF05804 KAP: Kinesin-associat 100.0 3.2E-25 6.9E-30 218.0 39.0 391 30-449 253-648 (708)
11 KOG0168 Putative ubiquitin fus 99.9 1.3E-18 2.7E-23 166.9 31.4 389 28-432 168-654 (1051)
12 KOG1048 Neural adherens juncti 99.8 1.5E-18 3.3E-23 167.0 28.3 365 71-452 234-686 (717)
13 PF10508 Proteasom_PSMB: Prote 99.8 3.9E-17 8.4E-22 159.8 35.2 369 73-451 41-421 (503)
14 KOG1048 Neural adherens juncti 99.8 2.7E-18 5.8E-23 165.4 26.1 369 24-400 230-688 (717)
15 PF10508 Proteasom_PSMB: Prote 99.8 8.1E-16 1.8E-20 150.5 38.2 397 30-449 41-461 (503)
16 KOG1222 Kinesin associated pro 99.8 3E-16 6.5E-21 142.1 30.3 424 18-466 295-726 (791)
17 KOG4500 Rho/Rac GTPase guanine 99.8 5.7E-17 1.2E-21 144.7 23.3 377 40-434 55-458 (604)
18 KOG4199 Uncharacterized conser 99.8 2.5E-15 5.5E-20 130.2 30.2 318 68-394 102-442 (461)
19 KOG2122 Beta-catenin-binding p 99.7 3.4E-16 7.5E-21 157.6 24.1 330 22-355 230-603 (2195)
20 KOG4199 Uncharacterized conser 99.7 4.8E-15 1E-19 128.5 26.6 324 23-353 100-444 (461)
21 KOG4500 Rho/Rac GTPase guanine 99.7 7E-15 1.5E-19 131.6 28.0 403 26-443 86-512 (604)
22 KOG2171 Karyopherin (importin) 99.7 3.9E-14 8.6E-19 141.8 34.7 394 26-445 117-541 (1075)
23 KOG1222 Kinesin associated pro 99.7 2.8E-14 6.1E-19 129.5 29.8 380 40-448 276-661 (791)
24 KOG2171 Karyopherin (importin) 99.7 5.1E-14 1.1E-18 141.0 33.0 400 24-447 33-501 (1075)
25 KOG2122 Beta-catenin-binding p 99.7 6E-15 1.3E-19 148.9 26.1 361 31-398 201-603 (2195)
26 PRK09687 putative lyase; Provi 99.7 2.2E-14 4.7E-19 128.9 23.0 255 71-393 24-279 (280)
27 KOG1293 Proteins containing ar 99.7 3.5E-13 7.7E-18 127.2 29.6 404 33-451 15-534 (678)
28 PRK09687 putative lyase; Provi 99.7 5.9E-14 1.3E-18 126.1 23.6 255 27-350 23-279 (280)
29 KOG2023 Nuclear transport rece 99.6 1.4E-13 3E-18 129.6 24.0 318 69-398 127-548 (885)
30 KOG1293 Proteins containing ar 99.6 3.3E-13 7.1E-18 127.4 26.0 374 23-400 47-537 (678)
31 PF04826 Arm_2: Armadillo-like 99.6 4.4E-13 9.5E-18 117.6 23.2 237 196-441 11-253 (254)
32 PRK13800 putative oxidoreducta 99.6 1.3E-12 2.8E-17 137.4 29.8 278 25-393 619-896 (897)
33 PF04826 Arm_2: Armadillo-like 99.6 1.1E-12 2.5E-17 115.0 22.0 196 67-269 9-206 (254)
34 PF01602 Adaptin_N: Adaptin N 99.5 1.5E-12 3.3E-17 130.9 22.3 360 28-453 80-447 (526)
35 PRK13800 putative oxidoreducta 99.5 9.5E-12 2E-16 130.9 28.2 276 70-447 621-896 (897)
36 PF01602 Adaptin_N: Adaptin N 99.5 8.9E-12 1.9E-16 125.3 27.0 329 28-400 43-373 (526)
37 cd00020 ARM Armadillo/beta-cat 99.5 9.6E-13 2.1E-17 104.0 14.8 119 65-185 2-120 (120)
38 cd00256 VATPase_H VATPase_H, r 99.5 5.7E-11 1.2E-15 111.1 28.2 324 26-353 52-425 (429)
39 PTZ00429 beta-adaptin; Provisi 99.5 5.7E-10 1.2E-14 112.5 36.6 369 29-450 70-471 (746)
40 cd00020 ARM Armadillo/beta-cat 99.5 2.8E-12 6E-17 101.3 14.7 118 235-353 3-120 (120)
41 KOG2023 Nuclear transport rece 99.4 4.7E-12 1E-16 119.5 16.9 319 113-448 128-503 (885)
42 KOG1241 Karyopherin (importin) 99.4 1.9E-10 4.2E-15 110.5 27.2 367 27-400 172-588 (859)
43 cd00256 VATPase_H VATPase_H, r 99.4 1.2E-10 2.7E-15 108.9 24.4 283 26-312 100-426 (429)
44 KOG0168 Putative ubiquitin fus 99.4 4.7E-10 1E-14 109.0 26.7 344 26-377 210-653 (1051)
45 PTZ00429 beta-adaptin; Provisi 99.4 1.3E-08 2.9E-13 102.8 37.9 295 26-354 31-327 (746)
46 KOG1241 Karyopherin (importin) 99.3 4.8E-10 1.1E-14 107.9 20.6 364 28-401 130-535 (859)
47 KOG1059 Vesicle coat complex A 99.2 3.1E-08 6.8E-13 95.1 30.1 218 29-268 146-365 (877)
48 KOG2759 Vacuolar H+-ATPase V1 99.2 2.8E-09 6E-14 96.3 20.3 309 29-353 116-438 (442)
49 KOG2160 Armadillo/beta-catenin 99.2 1.2E-08 2.5E-13 91.2 22.9 190 209-400 95-286 (342)
50 KOG2160 Armadillo/beta-catenin 99.2 5.7E-09 1.2E-13 93.1 20.5 183 85-268 97-282 (342)
51 KOG0946 ER-Golgi vesicle-tethe 99.2 1.8E-07 3.8E-12 91.0 30.6 324 71-400 23-403 (970)
52 KOG0213 Splicing factor 3b, su 99.1 9.2E-08 2E-12 92.2 26.2 398 19-453 705-1145(1172)
53 KOG0946 ER-Golgi vesicle-tethe 99.1 5.2E-07 1.1E-11 87.8 30.5 324 25-354 20-400 (970)
54 PF03224 V-ATPase_H_N: V-ATPas 99.1 1.3E-08 2.8E-13 94.3 18.9 227 157-386 57-304 (312)
55 PF03224 V-ATPase_H_N: V-ATPas 99.1 1.4E-08 3.1E-13 93.9 18.6 227 115-344 57-305 (312)
56 KOG2759 Vacuolar H+-ATPase V1 99.0 9.2E-07 2E-11 80.4 27.6 322 114-450 66-438 (442)
57 KOG1061 Vesicle coat complex A 99.0 1.2E-07 2.6E-12 92.4 23.5 341 28-401 50-420 (734)
58 COG5215 KAP95 Karyopherin (imp 99.0 2.9E-07 6.4E-12 86.4 24.3 359 32-402 138-535 (858)
59 KOG1062 Vesicle coat complex A 99.0 9.6E-07 2.1E-11 86.3 28.5 251 29-311 144-414 (866)
60 COG5215 KAP95 Karyopherin (imp 98.9 1.2E-06 2.7E-11 82.3 25.1 362 29-400 178-589 (858)
61 KOG1062 Vesicle coat complex A 98.9 1.9E-06 4.2E-11 84.3 26.6 341 75-449 112-494 (866)
62 KOG1517 Guanine nucleotide bin 98.9 1.5E-07 3.2E-12 94.1 19.0 271 40-321 449-742 (1387)
63 KOG0212 Uncharacterized conser 98.9 1.8E-07 3.8E-12 87.7 18.2 323 67-400 81-410 (675)
64 COG5181 HSH155 U2 snRNP splice 98.9 3.3E-08 7.2E-13 93.2 13.5 266 114-399 605-873 (975)
65 KOG4413 26S proteasome regulat 98.9 3.9E-05 8.4E-10 67.7 30.5 367 29-400 84-488 (524)
66 COG5369 Uncharacterized conser 98.9 3.9E-08 8.4E-13 91.4 12.9 306 132-448 408-739 (743)
67 KOG1060 Vesicle coat complex A 98.9 3.1E-06 6.8E-11 82.6 26.0 217 72-315 110-354 (968)
68 KOG0213 Splicing factor 3b, su 98.8 4.8E-06 1E-10 80.8 26.8 389 28-451 637-1066(1172)
69 KOG1242 Protein containing ada 98.8 7.7E-06 1.7E-10 78.3 27.4 343 71-450 97-444 (569)
70 KOG1789 Endocytosis protein RM 98.8 4.2E-06 9.2E-11 84.0 25.9 308 20-335 1764-2141(2235)
71 KOG1061 Vesicle coat complex A 98.8 8.4E-07 1.8E-11 86.7 20.3 365 29-448 123-526 (734)
72 KOG1789 Endocytosis protein RM 98.8 2.9E-05 6.2E-10 78.3 31.0 329 43-378 1741-2141(2235)
73 PF05536 Neurochondrin: Neuroc 98.8 2.6E-05 5.7E-10 77.1 31.0 384 27-429 5-459 (543)
74 KOG1059 Vesicle coat complex A 98.8 1.8E-05 3.9E-10 76.7 27.7 257 71-357 145-405 (877)
75 COG5369 Uncharacterized conser 98.8 4.9E-08 1.1E-12 90.7 10.1 370 20-394 329-739 (743)
76 KOG0212 Uncharacterized conser 98.8 6.4E-07 1.4E-11 84.0 17.1 319 27-357 84-410 (675)
77 KOG1517 Guanine nucleotide bin 98.7 6.4E-07 1.4E-11 89.7 18.0 246 29-278 474-742 (1387)
78 COG5181 HSH155 U2 snRNP splice 98.7 5.6E-06 1.2E-10 78.7 22.5 338 71-451 605-948 (975)
79 KOG3678 SARM protein (with ste 98.7 2.5E-06 5.5E-11 78.4 19.5 238 196-447 179-449 (832)
80 KOG3678 SARM protein (with ste 98.7 1.2E-06 2.7E-11 80.4 17.5 273 63-352 173-451 (832)
81 KOG1824 TATA-binding protein-i 98.7 6.4E-06 1.4E-10 82.0 23.4 354 31-399 9-405 (1233)
82 KOG1824 TATA-binding protein-i 98.7 4.3E-05 9.4E-10 76.4 28.8 331 78-451 826-1187(1233)
83 KOG1242 Protein containing ada 98.7 0.00015 3.1E-09 69.9 30.8 343 28-401 97-449 (569)
84 KOG2973 Uncharacterized conser 98.7 1.8E-05 4E-10 69.1 22.4 272 29-312 5-316 (353)
85 KOG2973 Uncharacterized conser 98.7 1.2E-05 2.5E-10 70.3 20.8 268 72-353 5-314 (353)
86 KOG4413 26S proteasome regulat 98.6 0.00014 3.1E-09 64.2 26.5 348 89-447 61-436 (524)
87 PF14664 RICTOR_N: Rapamycin-i 98.6 3.7E-05 8E-10 72.1 24.8 333 95-449 7-363 (371)
88 KOG0211 Protein phosphatase 2A 98.6 2.5E-05 5.4E-10 78.8 23.2 373 37-445 247-659 (759)
89 KOG1060 Vesicle coat complex A 98.5 0.00014 3.1E-09 71.5 26.9 283 77-400 150-462 (968)
90 KOG4646 Uncharacterized conser 98.5 3.6E-06 7.8E-11 63.9 11.6 153 282-449 17-169 (173)
91 KOG1077 Vesicle coat complex A 98.5 0.0012 2.7E-08 64.3 31.0 302 29-353 113-488 (938)
92 TIGR02270 conserved hypothetic 98.5 8E-05 1.7E-09 70.7 22.7 241 28-353 55-296 (410)
93 TIGR02270 conserved hypothetic 98.4 0.00019 4.1E-09 68.2 23.9 244 70-397 54-297 (410)
94 KOG2259 Uncharacterized conser 98.4 9.3E-06 2E-10 77.9 14.9 249 116-388 201-467 (823)
95 KOG0211 Protein phosphatase 2A 98.4 0.00016 3.4E-09 73.2 24.3 385 30-454 200-629 (759)
96 PF12460 MMS19_C: RNAPII trans 98.4 0.0011 2.4E-08 64.1 29.6 348 29-398 1-396 (415)
97 KOG0915 Uncharacterized conser 98.4 0.00037 8E-09 73.5 27.2 316 41-365 971-1318(1702)
98 KOG1077 Vesicle coat complex A 98.4 0.0024 5.2E-08 62.4 30.1 346 76-452 117-490 (938)
99 KOG2259 Uncharacterized conser 98.4 0.0001 2.3E-09 70.9 20.5 222 160-397 203-440 (823)
100 PF14664 RICTOR_N: Rapamycin-i 98.3 0.00016 3.5E-09 67.9 21.7 240 196-455 24-274 (371)
101 PF10165 Ric8: Guanine nucleot 98.3 0.00024 5.1E-09 68.9 23.5 264 49-315 3-341 (446)
102 KOG4646 Uncharacterized conser 98.3 1E-05 2.2E-10 61.5 10.6 114 71-187 17-130 (173)
103 COG5231 VMA13 Vacuolar H+-ATPa 98.3 5.7E-05 1.2E-09 66.3 16.6 230 78-311 157-428 (432)
104 COG1413 FOG: HEAT repeat [Ener 98.3 0.00035 7.6E-09 65.8 23.8 250 27-353 43-304 (335)
105 COG1413 FOG: HEAT repeat [Ener 98.2 0.00041 9E-09 65.4 22.6 249 70-395 43-303 (335)
106 PF00514 Arm: Armadillo/beta-c 98.2 2.6E-06 5.7E-11 52.0 5.0 40 102-141 1-40 (41)
107 COG5231 VMA13 Vacuolar H+-ATPa 98.2 0.0002 4.4E-09 63.0 17.9 239 200-451 152-429 (432)
108 KOG1240 Protein kinase contain 98.2 0.00021 4.6E-09 73.5 20.6 271 28-311 423-725 (1431)
109 KOG1058 Vesicle coat complex C 98.2 0.00082 1.8E-08 66.0 23.7 356 34-453 106-466 (948)
110 COG5240 SEC21 Vesicle coat com 98.2 0.00096 2.1E-08 63.6 23.3 378 17-452 171-557 (898)
111 KOG1240 Protein kinase contain 98.2 0.0003 6.6E-09 72.4 20.9 293 115-448 424-723 (1431)
112 PF00514 Arm: Armadillo/beta-c 98.2 4.7E-06 1E-10 50.9 5.3 41 270-311 1-41 (41)
113 PF05536 Neurochondrin: Neuroc 98.2 0.00021 4.6E-09 70.8 19.2 238 71-311 6-261 (543)
114 PF12348 CLASP_N: CLASP N term 98.1 2.6E-05 5.5E-10 69.1 10.6 185 249-450 17-206 (228)
115 COG5240 SEC21 Vesicle coat com 98.1 0.00051 1.1E-08 65.4 19.1 288 29-353 266-555 (898)
116 KOG2274 Predicted importin 9 [ 98.1 0.0039 8.5E-08 62.7 25.8 313 32-354 454-781 (1005)
117 KOG1943 Beta-tubulin folding c 98.1 0.0094 2E-07 61.4 28.4 340 27-396 341-705 (1133)
118 KOG1058 Vesicle coat complex C 98.0 0.0016 3.4E-08 64.1 21.6 281 76-396 105-388 (948)
119 KOG2734 Uncharacterized conser 98.0 0.0036 7.9E-08 57.9 22.5 231 16-248 115-370 (536)
120 COG5096 Vesicle coat complex, 98.0 0.0055 1.2E-07 61.9 25.9 140 29-186 57-196 (757)
121 PF12348 CLASP_N: CLASP N term 98.0 5.8E-05 1.3E-09 66.8 11.2 187 207-401 17-211 (228)
122 KOG0915 Uncharacterized conser 98.0 0.012 2.6E-07 62.7 28.9 326 12-354 986-1345(1702)
123 KOG1991 Nuclear transport rece 98.0 0.015 3.2E-07 59.4 28.1 344 45-400 390-761 (1010)
124 PF13646 HEAT_2: HEAT repeats; 98.0 3.5E-05 7.5E-10 56.6 7.5 87 199-307 1-88 (88)
125 KOG1943 Beta-tubulin folding c 98.0 0.0095 2.1E-07 61.3 26.5 261 69-353 340-611 (1133)
126 KOG1991 Nuclear transport rece 98.0 0.0059 1.3E-07 62.2 24.8 360 27-400 410-804 (1010)
127 KOG2734 Uncharacterized conser 97.9 0.0094 2E-07 55.2 23.1 238 49-291 106-371 (536)
128 PF09759 Atx10homo_assoc: Spin 97.9 8.4E-05 1.8E-09 54.8 8.2 68 87-154 2-71 (102)
129 PF13513 HEAT_EZ: HEAT-like re 97.9 2E-05 4.4E-10 51.8 4.5 55 296-351 1-55 (55)
130 PF13646 HEAT_2: HEAT repeats; 97.9 4.6E-05 1E-09 55.9 7.0 87 72-181 1-88 (88)
131 KOG1078 Vesicle coat complex C 97.9 0.011 2.4E-07 58.7 24.4 72 195-271 243-314 (865)
132 PF10165 Ric8: Guanine nucleot 97.9 0.006 1.3E-07 59.3 22.8 231 38-271 43-340 (446)
133 KOG2062 26S proteasome regulat 97.9 0.0013 2.8E-08 64.6 17.7 136 197-357 519-657 (929)
134 KOG1020 Sister chromatid cohes 97.8 0.067 1.4E-06 57.4 34.3 397 28-449 817-1253(1692)
135 PF12755 Vac14_Fab1_bd: Vacuol 97.8 0.00011 2.4E-09 54.2 8.0 95 298-396 2-96 (97)
136 KOG1248 Uncharacterized conser 97.8 0.0072 1.6E-07 62.8 23.2 243 75-322 658-910 (1176)
137 PF13513 HEAT_EZ: HEAT-like re 97.8 5.3E-05 1.2E-09 49.8 5.0 55 253-309 1-55 (55)
138 KOG0567 HEAT repeat-containing 97.8 0.017 3.6E-07 50.1 20.5 256 29-353 5-280 (289)
139 PF05918 API5: Apoptosis inhib 97.7 0.011 2.5E-07 57.7 21.6 297 72-400 25-349 (556)
140 KOG4535 HEAT and armadillo rep 97.7 0.00024 5.2E-09 66.0 9.7 301 86-393 270-600 (728)
141 PRK14707 hypothetical protein; 97.7 0.089 1.9E-06 58.4 29.1 402 28-447 164-568 (2710)
142 KOG1078 Vesicle coat complex C 97.7 0.0071 1.5E-07 60.0 19.3 141 196-352 390-531 (865)
143 COG5096 Vesicle coat complex, 97.7 0.0041 8.9E-08 62.7 18.2 157 175-353 39-195 (757)
144 KOG4535 HEAT and armadillo rep 97.7 0.00043 9.2E-09 64.4 10.3 274 35-311 303-603 (728)
145 PF11841 DUF3361: Domain of un 97.6 0.0033 7.1E-08 50.5 13.7 130 233-363 5-141 (160)
146 KOG1248 Uncharacterized conser 97.6 0.072 1.6E-06 55.8 26.0 234 160-400 658-902 (1176)
147 PF08569 Mo25: Mo25-like; Int 97.6 0.012 2.5E-07 54.5 18.6 207 233-453 70-286 (335)
148 PRK14707 hypothetical protein; 97.6 0.19 4.1E-06 56.0 29.2 387 41-449 137-529 (2710)
149 KOG0567 HEAT repeat-containing 97.5 0.022 4.7E-07 49.4 18.3 257 72-395 5-279 (289)
150 PF05004 IFRD: Interferon-rela 97.5 0.043 9.4E-07 50.5 21.6 198 199-401 45-262 (309)
151 PF08569 Mo25: Mo25-like; Int 97.5 0.078 1.7E-06 49.1 24.9 225 196-433 75-313 (335)
152 KOG1967 DNA repair/transcripti 97.5 0.0018 3.9E-08 65.2 13.0 189 114-308 816-1021(1030)
153 smart00185 ARM Armadillo/beta- 97.5 0.00033 7.2E-09 42.6 5.4 39 103-141 2-40 (41)
154 KOG4151 Myosin assembly protei 97.5 0.0021 4.6E-08 63.9 13.2 240 147-393 496-738 (748)
155 PF12717 Cnd1: non-SMC mitotic 97.5 0.0057 1.2E-07 51.5 14.3 93 210-312 1-93 (178)
156 PF12460 MMS19_C: RNAPII trans 97.5 0.12 2.6E-06 50.2 27.2 349 72-452 1-396 (415)
157 KOG4653 Uncharacterized conser 97.4 0.0072 1.6E-07 60.6 15.3 223 76-309 733-962 (982)
158 PF04078 Rcd1: Cell differenti 97.4 0.011 2.4E-07 51.5 14.5 186 209-397 7-219 (262)
159 KOG2274 Predicted importin 9 [ 97.3 0.23 5E-06 50.7 29.2 230 122-359 459-695 (1005)
160 PF12755 Vac14_Fab1_bd: Vacuol 97.3 0.0019 4E-08 47.8 8.0 91 174-266 4-94 (97)
161 PF12717 Cnd1: non-SMC mitotic 97.3 0.011 2.5E-07 49.7 13.9 91 85-186 2-93 (178)
162 smart00185 ARM Armadillo/beta- 97.3 0.00083 1.8E-08 40.8 5.2 37 273-310 4-40 (41)
163 PF11841 DUF3361: Domain of un 97.2 0.028 6E-07 45.3 14.3 124 148-272 4-135 (160)
164 KOG0414 Chromosome condensatio 97.2 0.016 3.5E-07 60.3 15.7 148 192-356 914-1067(1251)
165 PF09759 Atx10homo_assoc: Spin 97.1 0.0047 1E-07 45.7 8.5 68 255-322 2-70 (102)
166 PF12719 Cnd3: Nuclear condens 97.1 0.062 1.3E-06 49.5 18.0 173 195-379 24-209 (298)
167 KOG1967 DNA repair/transcripti 97.1 0.0039 8.4E-08 62.9 10.4 185 72-262 817-1018(1030)
168 KOG3036 Protein involved in ce 97.1 0.12 2.6E-06 44.4 17.4 185 210-397 37-248 (293)
169 KOG4653 Uncharacterized conser 97.1 0.033 7.2E-07 56.2 16.4 222 119-351 733-962 (982)
170 PF05918 API5: Apoptosis inhib 97.1 0.11 2.5E-06 51.0 19.7 255 116-397 26-298 (556)
171 KOG4151 Myosin assembly protei 97.0 0.016 3.4E-07 58.0 13.4 241 102-349 493-737 (748)
172 KOG2956 CLIP-associating prote 97.0 0.15 3.2E-06 48.1 18.6 147 156-311 330-477 (516)
173 KOG2062 26S proteasome regulat 96.9 0.13 2.9E-06 51.1 18.8 172 242-450 522-695 (929)
174 PF06025 DUF913: Domain of Unk 96.9 0.061 1.3E-06 51.0 16.4 222 90-322 3-243 (379)
175 PF05004 IFRD: Interferon-rela 96.9 0.12 2.7E-06 47.5 17.9 191 115-311 45-257 (309)
176 PF11701 UNC45-central: Myosin 96.9 0.013 2.8E-07 48.0 10.3 144 242-393 6-156 (157)
177 KOG2032 Uncharacterized conser 96.9 0.25 5.3E-06 47.0 19.3 113 196-311 257-371 (533)
178 PF11698 V-ATPase_H_C: V-ATPas 96.9 0.0034 7.4E-08 47.7 5.9 73 196-268 42-115 (119)
179 KOG2032 Uncharacterized conser 96.9 0.24 5.3E-06 47.0 19.1 257 123-396 268-531 (533)
180 PF12719 Cnd3: Nuclear condens 96.8 0.1 2.2E-06 48.1 16.6 107 243-355 31-145 (298)
181 KOG1243 Protein kinase [Genera 96.8 0.21 4.5E-06 49.7 18.9 193 194-401 327-520 (690)
182 PF04078 Rcd1: Cell differenti 96.7 0.07 1.5E-06 46.6 13.8 198 252-453 8-221 (262)
183 PF11698 V-ATPase_H_C: V-ATPas 96.7 0.0034 7.5E-08 47.7 5.1 73 281-353 43-115 (119)
184 KOG3036 Protein involved in ce 96.7 0.27 5.9E-06 42.3 16.3 147 211-362 93-254 (293)
185 KOG2956 CLIP-associating prote 96.7 0.063 1.4E-06 50.5 13.7 183 29-225 288-476 (516)
186 PF13764 E3_UbLigase_R4: E3 ub 96.7 0.71 1.5E-05 48.0 22.5 207 110-334 114-360 (802)
187 COG5116 RPN2 26S proteasome re 96.6 0.13 2.8E-06 49.7 15.9 151 201-378 520-673 (926)
188 KOG2025 Chromosome condensatio 96.6 0.27 5.9E-06 48.8 18.0 108 194-308 82-190 (892)
189 PF11864 DUF3384: Domain of un 96.6 0.91 2E-05 44.8 28.0 253 40-311 42-330 (464)
190 PF06025 DUF913: Domain of Unk 96.5 0.16 3.5E-06 48.2 16.0 145 61-206 96-253 (379)
191 COG5656 SXM1 Importin, protein 96.5 1.1 2.4E-05 45.0 22.8 297 45-356 388-714 (970)
192 PF11864 DUF3384: Domain of un 96.5 1 2.2E-05 44.5 24.5 287 42-353 5-330 (464)
193 PF08045 CDC14: Cell division 96.4 0.14 3.1E-06 45.1 13.5 107 340-459 107-216 (257)
194 KOG0414 Chromosome condensatio 96.3 0.037 8.1E-07 57.7 11.2 142 240-397 920-1065(1251)
195 PLN03076 ARF guanine nucleotid 96.3 2.2 4.8E-05 48.7 25.4 264 38-311 1148-1489(1780)
196 KOG1020 Sister chromatid cohes 96.3 0.077 1.7E-06 57.0 13.6 162 175-353 796-960 (1692)
197 PF11701 UNC45-central: Myosin 96.3 0.022 4.8E-07 46.7 7.8 147 157-308 5-156 (157)
198 PF11707 Npa1: Ribosome 60S bi 96.3 1 2.2E-05 42.2 23.3 157 241-397 58-238 (330)
199 COG5656 SXM1 Importin, protein 96.2 1.6 3.5E-05 43.9 26.1 315 25-353 406-757 (970)
200 PF07814 WAPL: Wings apart-lik 96.2 0.59 1.3E-05 44.3 17.8 275 72-355 23-357 (361)
201 KOG1566 Conserved protein Mo25 96.1 0.96 2.1E-05 40.6 17.3 203 149-355 73-288 (342)
202 PF02985 HEAT: HEAT repeat; I 96.1 0.01 2.3E-07 33.3 3.4 29 240-268 1-29 (31)
203 KOG0413 Uncharacterized conser 96.1 2.3 4.9E-05 44.3 22.1 91 296-397 945-1036(1529)
204 KOG1525 Sister chromatid cohes 96.0 2.8 6E-05 46.0 23.3 72 281-354 259-330 (1266)
205 PF08045 CDC14: Cell division 96.0 0.22 4.8E-06 43.9 12.7 102 86-187 106-209 (257)
206 COG5098 Chromosome condensatio 95.9 0.16 3.6E-06 50.2 12.6 181 197-400 892-1080(1128)
207 PF14668 RICTOR_V: Rapamycin-i 95.9 0.083 1.8E-06 36.4 7.8 66 299-367 4-70 (73)
208 KOG2025 Chromosome condensatio 95.9 0.82 1.8E-05 45.7 17.2 103 239-349 85-189 (892)
209 KOG1820 Microtubule-associated 95.9 0.2 4.4E-06 51.9 14.0 195 118-321 258-454 (815)
210 PF11865 DUF3385: Domain of un 95.9 0.13 2.8E-06 42.2 10.5 146 71-225 11-156 (160)
211 PF13764 E3_UbLigase_R4: E3 ub 95.9 2.5 5.3E-05 44.2 21.5 241 196-453 116-409 (802)
212 PF02985 HEAT: HEAT repeat; I 95.8 0.02 4.4E-07 32.1 3.7 29 198-226 1-29 (31)
213 KOG3665 ZYG-1-like serine/thre 95.8 1.4 3E-05 45.6 19.4 194 136-348 494-692 (699)
214 PF01603 B56: Protein phosphat 95.7 2 4.4E-05 41.5 19.3 254 91-358 110-374 (409)
215 PF01603 B56: Protein phosphat 95.7 0.89 1.9E-05 43.9 16.8 244 66-321 129-380 (409)
216 KOG1949 Uncharacterized conser 95.5 1.1 2.5E-05 44.6 16.7 237 152-396 126-370 (1005)
217 PF06371 Drf_GBD: Diaphanous G 95.5 0.088 1.9E-06 44.8 8.7 112 27-141 66-186 (187)
218 PLN03076 ARF guanine nucleotid 95.5 5.9 0.00013 45.4 24.3 271 76-354 1143-1490(1780)
219 PF14668 RICTOR_V: Rapamycin-i 95.5 0.13 2.9E-06 35.4 7.7 67 256-324 4-70 (73)
220 KOG3665 ZYG-1-like serine/thre 95.4 4.1 8.8E-05 42.3 21.7 174 262-448 494-695 (699)
221 KOG2999 Regulator of Rac1, req 95.2 2.4 5.2E-05 41.2 17.3 159 28-190 84-247 (713)
222 KOG2611 Neurochondrin/leucine- 95.2 1 2.2E-05 42.9 14.6 229 75-310 16-273 (698)
223 PF08506 Cse1: Cse1; InterPro 95.1 0.54 1.2E-05 44.5 13.1 210 86-306 111-370 (370)
224 COG5218 YCG1 Chromosome conden 95.1 3.7 7.9E-05 40.4 18.2 109 192-306 86-194 (885)
225 PF13251 DUF4042: Domain of un 95.1 0.93 2E-05 37.9 12.9 142 87-228 2-176 (182)
226 KOG1243 Protein kinase [Genera 95.0 1.3 2.8E-05 44.4 15.3 256 31-311 258-515 (690)
227 PF13251 DUF4042: Domain of un 94.8 0.61 1.3E-05 39.0 11.0 144 254-398 1-176 (182)
228 PF10363 DUF2435: Protein of u 94.6 0.18 3.9E-06 36.8 6.7 83 241-334 5-87 (92)
229 PF12231 Rif1_N: Rap1-interact 94.6 4.4 9.5E-05 38.7 21.5 266 126-397 59-353 (372)
230 PF08167 RIX1: rRNA processing 94.5 0.46 1E-05 39.3 9.9 112 239-354 25-144 (165)
231 KOG2999 Regulator of Rac1, req 94.5 2.1 4.5E-05 41.6 15.0 168 196-365 82-254 (713)
232 PF07814 WAPL: Wings apart-lik 94.5 3.2 7E-05 39.4 16.7 92 115-207 23-116 (361)
233 KOG1820 Microtubule-associated 94.5 0.99 2.1E-05 47.0 14.0 186 202-397 258-444 (815)
234 PF04063 DUF383: Domain of unk 94.5 0.64 1.4E-05 39.3 10.6 114 248-365 4-142 (192)
235 KOG2933 Uncharacterized conser 94.4 0.36 7.7E-06 43.2 9.2 144 241-395 90-233 (334)
236 KOG1566 Conserved protein Mo25 94.4 3.7 8.1E-05 37.0 17.7 209 233-455 73-291 (342)
237 KOG2137 Protein kinase [Signal 94.3 3.9 8.5E-05 41.3 17.0 159 192-359 384-545 (700)
238 PF04063 DUF383: Domain of unk 94.1 0.54 1.2E-05 39.8 9.5 123 208-334 6-157 (192)
239 COG5218 YCG1 Chromosome conden 94.0 1.2 2.5E-05 43.6 12.4 99 239-346 91-192 (885)
240 KOG1949 Uncharacterized conser 94.0 0.98 2.1E-05 45.1 12.0 158 63-226 167-331 (1005)
241 PF12530 DUF3730: Protein of u 93.8 4.4 9.5E-05 35.8 18.9 201 72-293 2-215 (234)
242 cd03567 VHS_GGA VHS domain fam 93.8 1.1 2.5E-05 35.6 10.2 74 325-398 39-118 (139)
243 PF10363 DUF2435: Protein of u 93.7 0.46 9.9E-06 34.7 7.2 73 198-272 4-76 (92)
244 COG5116 RPN2 26S proteasome re 93.5 2.2 4.8E-05 41.6 13.1 156 33-214 522-679 (926)
245 PF03378 CAS_CSE1: CAS/CSE pro 93.4 6 0.00013 38.5 16.4 274 72-354 28-325 (435)
246 PF01347 Vitellogenin_N: Lipop 93.3 4.2 9.2E-05 42.0 16.5 197 72-303 397-614 (618)
247 KOG0413 Uncharacterized conser 93.3 12 0.00027 39.3 19.3 129 127-268 945-1073(1529)
248 PF06371 Drf_GBD: Diaphanous G 93.3 1.1 2.4E-05 38.0 10.3 111 197-310 66-186 (187)
249 PF14500 MMS19_N: Dos2-interac 93.3 6 0.00013 35.6 19.8 213 166-396 9-237 (262)
250 PF11865 DUF3385: Domain of un 93.2 1.6 3.5E-05 35.8 10.6 147 195-352 8-156 (160)
251 cd03568 VHS_STAM VHS domain fa 93.1 0.69 1.5E-05 37.1 8.1 74 325-398 38-112 (144)
252 KOG2611 Neurochondrin/leucine- 93.1 8.5 0.00018 37.0 19.0 190 31-224 15-223 (698)
253 PF14500 MMS19_N: Dos2-interac 93.1 6.3 0.00014 35.4 19.7 223 117-356 3-240 (262)
254 PF12830 Nipped-B_C: Sister ch 93.1 3.3 7.2E-05 35.1 12.7 146 29-186 10-168 (187)
255 KOG1525 Sister chromatid cohes 93.0 17 0.00037 40.2 22.8 148 239-397 259-406 (1266)
256 KOG2137 Protein kinase [Signal 93.0 1.6 3.4E-05 44.0 11.8 135 111-252 387-521 (700)
257 cd03569 VHS_Hrs_Vps27p VHS dom 92.9 1.9 4.1E-05 34.6 10.4 74 325-398 42-116 (142)
258 PF11707 Npa1: Ribosome 60S bi 92.8 8.6 0.00019 36.0 22.9 163 283-454 58-241 (330)
259 KOG2933 Uncharacterized conser 92.6 1.7 3.8E-05 39.0 10.4 145 196-354 87-235 (334)
260 PF12074 DUF3554: Domain of un 92.4 2.5 5.4E-05 39.9 12.2 219 67-293 19-256 (339)
261 PF12530 DUF3730: Protein of u 92.3 7.6 0.00016 34.3 20.0 205 157-382 2-218 (234)
262 cd03572 ENTH_epsin_related ENT 92.1 2.6 5.7E-05 32.5 9.6 94 342-452 19-121 (122)
263 smart00638 LPD_N Lipoprotein N 91.6 9.2 0.0002 39.1 16.1 164 196-389 392-571 (574)
264 KOG1993 Nuclear transport rece 91.5 19 0.00041 37.1 24.6 304 81-396 497-812 (978)
265 cd03569 VHS_Hrs_Vps27p VHS dom 91.1 0.85 1.8E-05 36.6 6.4 75 26-100 40-114 (142)
266 cd03561 VHS VHS domain family; 90.9 3.5 7.7E-05 32.6 9.8 76 325-400 38-116 (133)
267 cd03568 VHS_STAM VHS domain fa 90.8 0.97 2.1E-05 36.3 6.5 74 27-100 37-110 (144)
268 KOG1992 Nuclear export recepto 90.7 23 0.0005 36.7 24.2 279 23-310 494-792 (960)
269 smart00288 VHS Domain present 90.2 4.6 9.9E-05 32.0 9.8 74 325-398 38-113 (133)
270 PF06685 DUF1186: Protein of u 90.2 13 0.00028 33.0 14.2 124 14-163 18-161 (249)
271 PF04388 Hamartin: Hamartin pr 90.1 9.2 0.0002 39.6 14.3 159 27-207 4-162 (668)
272 COG5209 RCD1 Uncharacterized p 90.0 4.9 0.00011 34.4 10.0 137 258-397 119-269 (315)
273 smart00288 VHS Domain present 89.4 1.5 3.2E-05 34.7 6.5 74 27-100 37-111 (133)
274 PF12830 Nipped-B_C: Sister ch 89.4 12 0.00027 31.6 14.4 146 156-311 9-167 (187)
275 cd03561 VHS VHS domain family; 89.1 2.4 5.2E-05 33.6 7.5 74 27-100 37-112 (133)
276 KOG1832 HIV-1 Vpr-binding prot 88.7 34 0.00075 35.9 16.5 94 251-355 674-775 (1516)
277 PF12231 Rif1_N: Rap1-interact 88.6 23 0.0005 33.8 20.7 180 38-225 4-203 (372)
278 KOG1848 Uncharacterized conser 88.6 25 0.00054 38.8 16.0 98 124-226 853-958 (1610)
279 PF12031 DUF3518: Domain of un 88.5 1.4 3.1E-05 38.1 6.0 84 42-127 139-230 (257)
280 PF13001 Ecm29: Proteasome sta 88.4 13 0.00029 37.1 13.8 223 208-455 248-493 (501)
281 cd03567 VHS_GGA VHS domain fam 88.3 2 4.4E-05 34.2 6.5 73 27-100 38-116 (139)
282 PF00790 VHS: VHS domain; Int 88.1 2.5 5.5E-05 33.8 7.1 74 325-398 43-120 (140)
283 PF01347 Vitellogenin_N: Lipop 87.7 37 0.0008 35.1 21.1 199 114-348 396-617 (618)
284 PF10521 DUF2454: Protein of u 87.7 9.9 0.00021 34.7 11.6 138 71-209 120-277 (282)
285 PF08324 PUL: PUL domain; Int 87.6 7 0.00015 35.4 10.6 177 176-354 40-232 (268)
286 PF08506 Cse1: Cse1; InterPro 87.5 27 0.00058 33.3 20.9 145 283-445 212-370 (370)
287 PF04869 Uso1_p115_head: Uso1 87.4 23 0.00051 32.7 13.7 174 252-431 51-263 (312)
288 PF14726 RTTN_N: Rotatin, an a 87.4 5.8 0.00013 29.3 7.9 70 365-447 28-97 (98)
289 PF08167 RIX1: rRNA processing 86.8 16 0.00036 30.1 12.4 116 71-190 26-148 (165)
290 smart00638 LPD_N Lipoprotein N 86.6 41 0.00089 34.4 19.9 161 157-346 395-571 (574)
291 COG5209 RCD1 Uncharacterized p 86.5 3.1 6.7E-05 35.5 6.8 95 306-400 123-222 (315)
292 KOG0891 DNA-dependent protein 86.1 12 0.00025 44.3 13.0 264 36-312 490-764 (2341)
293 PF08324 PUL: PUL domain; Int 85.8 19 0.00042 32.5 12.5 156 73-231 66-236 (268)
294 PF12726 SEN1_N: SEN1 N termin 85.7 52 0.0011 34.8 26.5 115 325-453 442-556 (727)
295 KOG1848 Uncharacterized conser 85.6 40 0.00086 37.3 15.5 109 334-449 1007-1131(1610)
296 KOG1832 HIV-1 Vpr-binding prot 85.5 52 0.0011 34.7 17.1 355 91-453 329-776 (1516)
297 PF12031 DUF3518: Domain of un 85.4 3.3 7.1E-05 36.0 6.5 80 86-166 139-227 (257)
298 PF14225 MOR2-PAG1_C: Cell mor 85.4 28 0.0006 31.3 18.7 216 33-267 13-253 (262)
299 KOG1788 Uncharacterized conser 84.8 62 0.0013 34.9 18.9 234 23-272 462-715 (2799)
300 KOG4464 Signaling protein RIC- 84.7 28 0.00061 33.0 12.4 153 159-311 49-231 (532)
301 cd03572 ENTH_epsin_related ENT 84.6 17 0.00036 28.2 10.6 72 325-396 39-119 (122)
302 PF10521 DUF2454: Protein of u 84.4 15 0.00032 33.6 10.9 139 239-379 119-277 (282)
303 KOG2005 26S proteasome regulat 84.4 42 0.0009 34.0 14.1 290 28-359 416-710 (878)
304 PF06685 DUF1186: Protein of u 84.1 30 0.00065 30.7 14.5 129 238-372 72-202 (249)
305 PF12463 DUF3689: Protein of u 83.6 15 0.00033 33.6 10.3 79 322-400 93-177 (303)
306 KOG1822 Uncharacterized conser 83.5 93 0.002 35.9 21.3 230 72-309 878-1125(2067)
307 KOG1993 Nuclear transport rece 83.0 63 0.0014 33.6 23.5 319 28-359 527-870 (978)
308 PF13001 Ecm29: Proteasome sta 82.8 42 0.0009 33.7 14.2 215 169-397 250-489 (501)
309 PF10274 ParcG: Parkin co-regu 82.8 17 0.00037 30.4 9.5 76 28-105 39-114 (183)
310 PF08767 CRM1_C: CRM1 C termin 82.2 43 0.00094 31.2 14.4 181 254-450 42-244 (319)
311 KOG0891 DNA-dependent protein 82.0 63 0.0014 38.7 16.5 252 130-397 461-720 (2341)
312 cd03565 VHS_Tom1 VHS domain fa 81.6 17 0.00037 29.1 9.0 74 325-398 39-117 (141)
313 PF04821 TIMELESS: Timeless pr 79.9 12 0.00025 33.9 8.4 81 380-460 133-218 (266)
314 PF00790 VHS: VHS domain; Int 79.8 2.4 5.2E-05 33.9 3.6 74 27-100 42-118 (140)
315 PF04499 SAPS: SIT4 phosphatas 79.1 28 0.00061 34.4 11.3 112 239-354 21-149 (475)
316 PF14726 RTTN_N: Rotatin, an a 78.8 24 0.00052 26.1 8.7 93 42-137 2-95 (98)
317 PF04499 SAPS: SIT4 phosphatas 78.5 21 0.00046 35.3 10.2 84 315-398 53-150 (475)
318 KOG2199 Signal transducing ada 77.3 3 6.6E-05 38.6 3.8 102 367-479 45-147 (462)
319 PF12726 SEN1_N: SEN1 N termin 77.2 88 0.0019 33.2 15.1 142 31-187 445-587 (727)
320 KOG0889 Histone acetyltransfer 76.8 2.1E+02 0.0044 35.8 19.9 302 70-378 984-1329(3550)
321 cd00197 VHS_ENTH_ANTH VHS, ENT 76.5 20 0.00043 27.4 7.8 70 368-448 38-113 (115)
322 PF08767 CRM1_C: CRM1 C termin 76.4 66 0.0014 30.0 16.5 181 128-310 42-243 (319)
323 KOG0301 Phospholipase A2-activ 75.8 97 0.0021 31.6 17.3 160 85-249 558-726 (745)
324 KOG2199 Signal transducing ada 74.5 13 0.00028 34.7 6.9 74 324-397 45-119 (462)
325 PF03378 CAS_CSE1: CAS/CSE pro 73.2 97 0.0021 30.4 15.7 264 125-399 42-327 (435)
326 COG5098 Chromosome condensatio 72.8 1.2E+02 0.0026 31.2 24.0 76 326-401 301-380 (1128)
327 cd00197 VHS_ENTH_ANTH VHS, ENT 72.7 21 0.00046 27.3 7.1 70 325-394 38-113 (115)
328 KOG1788 Uncharacterized conser 72.7 1.5E+02 0.0032 32.3 22.0 78 317-395 901-981 (2799)
329 PF09324 DUF1981: Domain of un 72.4 9.1 0.0002 27.6 4.6 71 152-222 14-84 (86)
330 PF09758 FPL: Uncharacterised 72.1 3.4 7.3E-05 33.1 2.4 125 270-394 15-147 (149)
331 KOG0392 SNF2 family DNA-depend 72.0 86 0.0019 34.6 12.9 232 113-355 77-327 (1549)
332 PF12783 Sec7_N: Guanine nucle 72.0 41 0.00089 27.8 9.2 109 41-153 36-157 (168)
333 PF10274 ParcG: Parkin co-regu 70.6 63 0.0014 27.1 11.8 72 239-312 38-110 (183)
334 PF12054 DUF3535: Domain of un 70.5 27 0.00059 34.2 8.8 57 41-102 101-157 (441)
335 KOG4464 Signaling protein RIC- 70.5 1E+02 0.0022 29.4 20.4 273 29-306 47-382 (532)
336 PF04388 Hamartin: Hamartin pr 70.2 1.1E+02 0.0023 32.1 13.3 91 241-334 72-162 (668)
337 KOG2038 CAATT-binding transcri 70.0 1.4E+02 0.0031 31.0 17.8 104 72-186 306-410 (988)
338 KOG2149 Uncharacterized conser 69.9 45 0.00097 31.6 9.4 133 157-292 60-193 (393)
339 PF08389 Xpo1: Exportin 1-like 69.7 39 0.00085 26.9 8.5 125 172-306 4-148 (148)
340 cd08050 TAF6 TATA Binding Prot 68.3 59 0.0013 30.7 10.2 112 196-309 209-338 (343)
341 KOG0803 Predicted E3 ubiquitin 68.1 2.2E+02 0.0047 32.3 17.7 110 25-141 39-152 (1312)
342 KOG1988 Uncharacterized conser 67.9 1.7E+02 0.0037 31.0 15.2 251 30-311 27-281 (970)
343 KOG0301 Phospholipase A2-activ 67.7 1.5E+02 0.0033 30.3 17.3 166 203-377 550-726 (745)
344 KOG0392 SNF2 family DNA-depend 67.7 1.3E+02 0.0028 33.4 13.1 233 28-270 78-327 (1549)
345 PF12054 DUF3535: Domain of un 67.5 1.3E+02 0.0028 29.6 15.2 302 127-443 101-436 (441)
346 PF11229 DUF3028: Protein of u 67.0 1.4E+02 0.003 29.6 17.2 229 156-396 98-353 (589)
347 KOG1822 Uncharacterized conser 66.9 2.6E+02 0.0056 32.7 24.9 271 116-395 879-1188(2067)
348 cd03565 VHS_Tom1 VHS domain fa 66.7 31 0.00067 27.6 6.9 74 27-100 38-115 (141)
349 KOG1992 Nuclear export recepto 66.6 1.8E+02 0.0038 30.7 30.3 363 30-400 40-531 (960)
350 PF06012 DUF908: Domain of Unk 66.5 48 0.001 31.1 9.3 78 86-164 237-325 (329)
351 PF08216 CTNNBL: Catenin-beta- 66.4 6.2 0.00014 29.6 2.7 41 343-385 65-105 (108)
352 KOG2149 Uncharacterized conser 65.7 65 0.0014 30.6 9.6 133 240-377 59-192 (393)
353 KOG2073 SAP family cell cycle 64.5 2E+02 0.0044 30.7 16.1 194 196-396 189-396 (838)
354 smart00509 TFS2N Domain in the 64.4 36 0.00079 23.7 6.1 51 384-447 18-68 (75)
355 PF09758 FPL: Uncharacterised 64.2 32 0.0007 27.7 6.5 124 101-224 14-147 (149)
356 KOG2676 Uncharacterized conser 62.7 11 0.00023 34.8 3.9 62 91-152 376-439 (478)
357 PF01417 ENTH: ENTH domain; I 61.8 26 0.00057 27.3 5.7 98 336-451 15-122 (125)
358 PF04869 Uso1_p115_head: Uso1 61.5 1.4E+02 0.003 27.8 16.6 144 210-353 51-231 (312)
359 PF14225 MOR2-PAG1_C: Cell mor 61.4 1.2E+02 0.0027 27.2 19.4 178 116-311 67-254 (262)
360 KOG4524 Uncharacterized conser 60.8 31 0.00068 36.5 7.2 96 195-292 801-900 (1014)
361 KOG2549 Transcription initiati 60.4 1.9E+02 0.0041 28.9 13.7 140 117-267 211-369 (576)
362 PF04821 TIMELESS: Timeless pr 60.4 1.3E+02 0.0028 27.2 15.6 63 24-100 10-72 (266)
363 PF14631 FancD2: Fanconi anaem 59.0 3.4E+02 0.0073 31.4 21.9 139 239-386 431-573 (1426)
364 PF08711 Med26: TFIIS helical 58.9 44 0.00096 21.2 5.5 34 414-447 13-47 (53)
365 KOG2005 26S proteasome regulat 58.9 2.2E+02 0.0048 29.3 16.7 87 16-104 37-129 (878)
366 KOG1087 Cytosolic sorting prot 58.2 67 0.0015 31.6 8.7 72 325-396 39-112 (470)
367 PF08713 DNA_alkylation: DNA a 58.0 35 0.00076 29.4 6.5 77 239-323 120-196 (213)
368 KOG2011 Sister chromatid cohes 57.8 2.9E+02 0.0063 30.3 14.0 135 248-394 296-433 (1048)
369 cd00183 TFIIS_I N-terminal dom 55.7 63 0.0014 22.5 6.1 34 414-447 37-70 (76)
370 PRK09169 hypothetical protein; 55.6 4.4E+02 0.0096 31.7 29.0 78 28-108 164-243 (2316)
371 PF09324 DUF1981: Domain of un 55.3 45 0.00098 24.0 5.5 67 278-349 14-84 (86)
372 cd08050 TAF6 TATA Binding Prot 53.8 2E+02 0.0043 27.2 11.8 110 156-266 211-338 (343)
373 PF08216 CTNNBL: Catenin-beta- 53.3 18 0.00038 27.2 3.1 42 89-131 64-105 (108)
374 PF03130 HEAT_PBS: PBS lyase H 52.8 15 0.00033 19.5 2.1 14 298-311 1-14 (27)
375 PF01365 RYDR_ITPR: RIH domain 52.1 63 0.0014 27.8 7.0 120 273-398 35-171 (207)
376 PF13925 Katanin_con80: con80 51.6 1.4E+02 0.003 24.7 8.7 75 152-227 25-99 (164)
377 PF12765 Cohesin_HEAT: HEAT re 51.2 14 0.0003 22.3 1.9 41 220-263 2-42 (42)
378 smart00802 UME Domain in UVSB 50.9 1.1E+02 0.0023 23.2 8.1 80 281-365 11-95 (107)
379 PF12074 DUF3554: Domain of un 50.1 2.2E+02 0.0049 26.7 18.5 191 156-354 23-236 (339)
380 KOG2229 Protein required for a 49.9 1E+02 0.0022 30.3 8.2 144 281-446 16-162 (616)
381 KOG1410 Nuclear transport rece 49.9 3.1E+02 0.0068 28.3 22.1 289 29-334 7-355 (1082)
382 smart00567 EZ_HEAT E-Z type HE 48.1 31 0.00067 18.6 2.9 14 297-310 2-15 (30)
383 PF07539 DRIM: Down-regulated 47.5 1.2E+02 0.0026 24.3 7.2 83 112-207 16-98 (141)
384 KOG2213 Apoptosis inhibitor 5/ 47.4 2.6E+02 0.0057 26.7 22.0 272 73-397 28-315 (460)
385 PF08454 RIH_assoc: RyR and IP 47.0 59 0.0013 24.6 5.2 76 5-80 27-106 (109)
386 KOG1087 Cytosolic sorting prot 46.8 45 0.00098 32.7 5.6 73 27-99 38-111 (470)
387 PF08064 UME: UME (NUC010) dom 46.5 1.3E+02 0.0027 22.8 8.1 80 281-365 11-95 (107)
388 PF11935 DUF3453: Domain of un 45.0 2.2E+02 0.0048 25.2 10.9 76 325-400 44-149 (239)
389 cd06561 AlkD_like A new struct 44.2 1.3E+02 0.0029 25.3 7.8 74 242-322 108-181 (197)
390 KOG1791 Uncharacterized conser 43.9 4.8E+02 0.01 30.1 12.8 191 103-294 1429-1641(1758)
391 PF08389 Xpo1: Exportin 1-like 43.4 81 0.0017 25.0 6.1 63 197-263 82-148 (148)
392 COG5537 IRR1 Cohesin [Cell div 42.5 3.9E+02 0.0084 27.3 13.2 143 242-396 278-422 (740)
393 PF11791 Aconitase_B_N: Aconit 42.0 97 0.0021 25.0 5.8 29 326-354 96-124 (154)
394 PF01365 RYDR_ITPR: RIH domain 40.8 1.2E+02 0.0026 26.0 7.0 94 254-353 76-169 (207)
395 PLN03205 ATR interacting prote 40.2 3.4E+02 0.0074 26.0 15.9 160 196-356 322-519 (652)
396 PF12783 Sec7_N: Guanine nucle 39.0 2.2E+02 0.0047 23.4 11.9 78 234-312 68-147 (168)
397 PF06012 DUF908: Domain of Unk 38.8 1.1E+02 0.0024 28.6 6.9 61 60-120 253-323 (329)
398 KOG0889 Histone acetyltransfer 38.0 9.8E+02 0.021 30.6 17.7 248 191-451 1027-1307(3550)
399 PF11791 Aconitase_B_N: Aconit 38.0 2.2E+02 0.0047 23.1 7.7 101 198-311 23-123 (154)
400 PF12397 U3snoRNP10: U3 small 37.9 1.9E+02 0.004 22.2 9.2 65 240-311 7-74 (121)
401 PF14663 RasGEF_N_2: Rapamycin 37.9 82 0.0018 24.1 4.9 38 114-152 9-46 (115)
402 PF10257 RAI16-like: Retinoic 37.3 3.7E+02 0.008 25.5 12.6 130 233-365 3-169 (353)
403 KOG2038 CAATT-binding transcri 36.9 5.3E+02 0.012 27.2 19.0 175 39-227 316-527 (988)
404 PLN03205 ATR interacting prote 36.3 1.7E+02 0.0037 27.9 7.2 114 240-353 324-446 (652)
405 PF08064 UME: UME (NUC010) dom 34.8 2E+02 0.0043 21.7 7.2 79 239-322 11-95 (107)
406 PF08713 DNA_alkylation: DNA a 31.4 1.4E+02 0.003 25.7 5.9 142 116-280 54-196 (213)
407 PF08623 TIP120: TATA-binding 31.2 2.3E+02 0.0051 23.5 6.7 93 253-351 41-145 (169)
408 KOG2011 Sister chromatid cohes 30.8 7.7E+02 0.017 27.3 15.4 140 290-451 296-436 (1048)
409 KOG2676 Uncharacterized conser 30.4 66 0.0014 29.9 3.6 62 216-277 375-438 (478)
410 PF14666 RICTOR_M: Rapamycin-i 30.1 3.8E+02 0.0083 23.5 13.5 130 211-353 78-225 (226)
411 cd03562 CID CID (CTD-Interacti 29.6 2.3E+02 0.0049 21.4 6.2 90 251-351 17-106 (114)
412 KOG1791 Uncharacterized conser 29.3 5.7E+02 0.012 29.5 10.6 118 278-397 1537-1661(1758)
413 cd03562 CID CID (CTD-Interacti 29.3 2.5E+02 0.0055 21.2 8.7 86 168-262 17-102 (114)
414 PF06743 FAST_1: FAST kinase-l 29.3 1.9E+02 0.0041 19.8 5.6 65 177-242 5-69 (71)
415 cd07064 AlkD_like_1 A new stru 29.0 3.3E+02 0.0072 23.5 7.7 74 241-322 117-190 (208)
416 KOG0803 Predicted E3 ubiquitin 28.7 9.4E+02 0.02 27.6 15.5 111 241-353 43-153 (1312)
417 PRK09169 hypothetical protein; 28.6 1.2E+03 0.025 28.6 29.8 111 72-184 165-276 (2316)
418 PF12463 DUF3689: Protein of u 28.1 4.9E+02 0.011 24.1 15.5 123 65-187 4-175 (303)
419 KOG2549 Transcription initiati 27.9 6.4E+02 0.014 25.4 12.5 132 168-310 219-369 (576)
420 PF07923 N1221: N1221-like pro 27.6 78 0.0017 29.1 3.8 56 322-377 58-126 (293)
421 PF01465 GRIP: GRIP domain; I 27.4 1.6E+02 0.0034 18.2 4.4 35 73-108 10-44 (46)
422 KOG1924 RhoA GTPase effector D 27.2 7.8E+02 0.017 26.2 15.8 58 253-311 206-263 (1102)
423 KOG3687 Tuberin - Rap/ran-GTPa 26.9 8.8E+02 0.019 26.7 11.7 66 336-401 442-507 (1697)
424 KOG2085 Serine/threonine prote 26.5 6E+02 0.013 24.6 15.4 48 102-149 166-213 (457)
425 smart00802 UME Domain in UVSB 25.9 2.9E+02 0.0064 20.8 7.0 79 239-322 11-95 (107)
426 PF07923 N1221: N1221-like pro 25.9 1.1E+02 0.0025 28.0 4.6 57 66-123 56-126 (293)
427 PF04064 DUF384: Domain of unk 25.5 2E+02 0.0044 18.9 5.9 44 413-456 11-55 (58)
428 PF14631 FancD2: Fanconi anaem 25.4 1.1E+03 0.025 27.5 15.3 135 202-344 440-574 (1426)
429 PF14666 RICTOR_M: Rapamycin-i 25.0 4.7E+02 0.01 22.9 13.3 128 296-449 78-224 (226)
430 PF11935 DUF3453: Domain of un 24.9 4.1E+02 0.0089 23.5 7.7 73 375-451 1-73 (239)
431 KOG4231 Intracellular membrane 24.7 1.6E+02 0.0035 29.0 5.3 69 242-311 331-399 (763)
432 PF08623 TIP120: TATA-binding 23.2 4.4E+02 0.0095 21.9 7.8 94 169-266 40-145 (169)
433 PF12397 U3snoRNP10: U3 small 23.2 3.5E+02 0.0075 20.7 10.1 70 195-270 4-76 (121)
434 KOG1410 Nuclear transport rece 22.6 9E+02 0.019 25.3 21.1 142 115-267 7-156 (1082)
435 TIGR03504 FimV_Cterm FimV C-te 21.6 1.7E+02 0.0037 17.9 3.2 27 421-447 17-43 (44)
436 KOG2256 Predicted protein invo 21.2 9.3E+02 0.02 24.9 12.1 34 253-292 442-475 (661)
437 KOG2219 Uncharacterized conser 20.7 1.7E+02 0.0037 29.7 4.7 162 208-369 38-212 (864)
438 COG5537 IRR1 Cohesin [Cell div 20.6 9.3E+02 0.02 24.7 12.4 98 124-225 286-385 (740)
439 KOG4524 Uncharacterized conser 20.1 1.2E+03 0.025 25.6 20.6 94 281-377 803-899 (1014)
No 1
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.6e-60 Score=436.43 Aligned_cols=424 Identities=66% Similarity=0.981 Sum_probs=403.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHH
Q 043116 29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKV 108 (482)
Q Consensus 29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 108 (482)
.+.+++.+.|+++..+..+...++++.+.+.+++...++..|++|.++.+|...+++.++..|+|+|.|+++++.+..+.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 78889999999999999999999999999888889999999999999999986666999999999999999999999999
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC-
Q 043116 109 AIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK- 187 (482)
Q Consensus 109 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~- 187 (482)
+++.|.+|.|+.++.+++..+++.|+|+|+|++.+++.+|+.+.+.|++++|+.++.......+.++++|+|+|||++.
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999966555689999999999999998
Q ss_pred CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhh
Q 043116 188 PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIV 267 (482)
Q Consensus 188 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 267 (482)
|.........++|.|..++.+.|+++...++|++++++.+.++..+.+++.|+++.|+.+|.+.++.++..|+++++|++
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv 307 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV 307 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHH
Q 043116 268 TGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWV 347 (482)
Q Consensus 268 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~a 347 (482)
.+++.+++.+++.|+++.|..++...+...+|++|||+++|++.+++++++.+++.|++|.|+.+++.++.++|++|+||
T Consensus 308 tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawa 387 (514)
T KOG0166|consen 308 TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWA 387 (514)
T ss_pred eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999999999965477799999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHH
Q 043116 348 ISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIE 427 (482)
Q Consensus 348 L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~ 427 (482)
++|++..+++++..+|++.|+++.++++|.-.|.++...++++|.++++.++...... .+++..++++.||++.++
T Consensus 388 IsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~----~n~~~~~IEe~ggldkiE 463 (514)
T KOG0166|consen 388 ISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRG----TNPLAIMIEEAGGLDKIE 463 (514)
T ss_pred HHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhcccc----ccHHHHHHHHccChhHHH
Confidence 9999999999999999999999999999999999999999999999999999876532 188999999999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 043116 428 NLQSHDNNDIHEMSVKILETYWCGRVVGP 456 (482)
Q Consensus 428 ~l~~~~~~~v~~~a~~~l~~~~~~~~~~~ 456 (482)
.|++|+|.++|+.|.++|++||.++++++
T Consensus 464 ~LQ~hen~~Iy~~A~~II~~yf~~e~~~~ 492 (514)
T KOG0166|consen 464 NLQSHENEEIYKKAYKIIDTYFSEEDDED 492 (514)
T ss_pred HhhccccHHHHHHHHHHHHHhcCCCcccc
Confidence 99999999999999999999999986554
No 2
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=2e-58 Score=394.57 Aligned_cols=427 Identities=55% Similarity=0.852 Sum_probs=398.1
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh
Q 043116 26 FEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN 105 (482)
Q Consensus 26 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~ 105 (482)
-.-+|.|.+.+.|+|.+.+..|..-++++++.+..++++.+++.|++|.+++++......-.+..|+|+|.|+++++...
T Consensus 70 ~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~Q 149 (526)
T COG5064 70 YSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQ 149 (526)
T ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccc
Confidence 34679999999999999999999999999999888999999999999999999954442678999999999999999999
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcch-hhhhHHHHHHHHHHHhh
Q 043116 106 TKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEH-AKLSMLRTATWTLSNFC 184 (482)
Q Consensus 106 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~L~ 184 (482)
.+.+++.|.+|.++.+|.+++..++++++|+|+|++++++.+|+.+.+.|++.+++.++..+ .+..+.+++.|+|+|||
T Consensus 150 TkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlc 229 (526)
T COG5064 150 TKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLC 229 (526)
T ss_pred eEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999543 34689999999999999
Q ss_pred cCC-CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHH
Q 043116 185 RGK-PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTI 263 (482)
Q Consensus 185 ~~~-~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L 263 (482)
+.. |......+...+|.|.+++.+.|+++...++|++++++....+..+.+++.|+.++|+.+|++++..++..+++.+
T Consensus 230 RGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~v 309 (526)
T COG5064 230 RGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSV 309 (526)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhh
Confidence 998 7778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHH
Q 043116 264 GNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKE 343 (482)
Q Consensus 264 ~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~ 343 (482)
+|+..+++.+.+.+++.|+++.+..+|+++ ...+|++|||+++|+..++.++++.+++.+++|.|+++|.+.+..++++
T Consensus 310 GNIVTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKE 388 (526)
T COG5064 310 GNIVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKE 388 (526)
T ss_pred cCeeecCccceehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCC--CHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhc
Q 043116 344 AAWVISNATSGG--THEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAE 421 (482)
Q Consensus 344 a~~aL~~l~~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 421 (482)
||||+.|...++ .|+..++++++|++..|+++|.-.+.++.+.+++++.++++.++..... .....|.|...+++.|
T Consensus 389 ACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~-~~~nin~ya~~vE~Ag 467 (526)
T COG5064 389 ACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLR-YGKNINIYAVYVEKAG 467 (526)
T ss_pred HHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHh-ccCCccHHHHHHHhcc
Confidence 999999998865 5788999999999999999999999899999999999999988776543 2245678899998899
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 043116 422 GLEKIENLQSHDNNDIHEMSVKILETYWCGRVV 454 (482)
Q Consensus 422 ~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 454 (482)
|++.+..++++.|.++|++|-.+|++||.+|+.
T Consensus 468 gmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~ 500 (526)
T COG5064 468 GMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDA 500 (526)
T ss_pred cHHHHHHhhhccccHHHHHHHHHHHHHcccchh
Confidence 999999999999999999999999999988754
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-46 Score=345.57 Aligned_cols=369 Identities=24% Similarity=0.366 Sum_probs=333.8
Q ss_pred hccHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChH
Q 043116 26 FEILPTMVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSE 104 (482)
Q Consensus 26 ~~~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~ 104 (482)
.|.+|.+++++. .+++.+|++|+|+|.|++++. .+..+.+++.|.+|.|++++.+++ .+++++|+|+|+|++.+++.
T Consensus 108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~ 185 (514)
T KOG0166|consen 108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPD 185 (514)
T ss_pred cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChH
Confidence 399999999997 556999999999999999988 788899999999999999999999 99999999999999999999
Q ss_pred hHHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116 105 NTKVAIDHGAVPIFVKLLASPSD-DVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF 183 (482)
Q Consensus 105 ~~~~~~~~g~i~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L 183 (482)
+|+.+++.|++++|+.++...+. .+.+.++|+|+|+|++.......-.-..+++.|..++ ++.|+++...++|++++|
T Consensus 186 ~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyL 264 (514)
T KOG0166|consen 186 CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYL 264 (514)
T ss_pred HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHH
Confidence 99999999999999999987765 7888999999999976622222223334788899988 889999999999999999
Q ss_pred hcCCCCC-ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhC-CCChhhHHHHHH
Q 043116 184 CRGKPQP-PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLG-HRSRLVLTAALR 261 (482)
Q Consensus 184 ~~~~~~~-~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~ 261 (482)
+...+.. +.....|++|.|+++|.+.++.++..++++++|++.+++.+.+.+++.|.++.|..++. ++...++++|||
T Consensus 265 sdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW 344 (514)
T KOG0166|consen 265 TDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACW 344 (514)
T ss_pred hcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHH
Confidence 9887444 44455799999999999999999999999999999999999999999999999999998 567779999999
Q ss_pred HHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhH
Q 043116 262 TIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA-GNREQIQAVIDAGLIGPIVNLLQDAEFGT 340 (482)
Q Consensus 262 ~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~~ 340 (482)
+|+|++.++.++.+.+++.|++|.|+.+|++. +.++|++|+|+++|++. ++++++.++++.|+++.++++|...|..+
T Consensus 345 ~iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~i 423 (514)
T KOG0166|consen 345 TISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKI 423 (514)
T ss_pred HHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHH
Confidence 99999999999999999999999999999999 89999999999999998 78999999999999999999999899999
Q ss_pred HHHHHHHHHHhhcCCC-------HHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhc
Q 043116 341 KKEAAWVISNATSGGT-------HEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVG 398 (482)
Q Consensus 341 ~~~a~~aL~~l~~~~~-------~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~ 398 (482)
...+..++.++...+. ......+.+.|+++++..+..+++.++..+|..++.++|...
T Consensus 424 i~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 424 ILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence 9999999999976442 234566778899999999999999999999999999999654
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=9.3e-46 Score=316.96 Aligned_cols=370 Identities=23% Similarity=0.304 Sum_probs=326.7
Q ss_pred hhhhccHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCC
Q 043116 23 QSKFEILPTMVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASG 101 (482)
Q Consensus 23 ~~~~~~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 101 (482)
+-..|.+|++++++. .+....+++|+|+|.|++++. ..+.+.+++.|.+|.++++|.+++ .+++++++|+|+|++.+
T Consensus 110 VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGD 187 (526)
T COG5064 110 VIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGD 187 (526)
T ss_pred HHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCC
Confidence 446789999999995 667888999999999999987 667788889999999999999999 89999999999999999
Q ss_pred ChHhHHHHHhCCChHHHHHhhCCCC--HHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHH
Q 043116 102 TSENTKVAIDHGAVPIFVKLLASPS--DDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWT 179 (482)
Q Consensus 102 ~~~~~~~~~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~ 179 (482)
++.+|+.+++.|++++++.++.+.- ..+.+.+.|+|+|+|++.....+.-.-+..++.|.+++ ...|+++...|+|+
T Consensus 188 S~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLi-ys~D~evlvDA~WA 266 (526)
T COG5064 188 SEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLI-YSRDPEVLVDACWA 266 (526)
T ss_pred chhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHH-hhcCHHHHHHHHHH
Confidence 9999999999999999999988654 47888999999999965422111111223688888888 88899999999999
Q ss_pred HHHhhcCCCCCChh-hhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHH
Q 043116 180 LSNFCRGKPQPPFN-QIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTA 258 (482)
Q Consensus 180 L~~L~~~~~~~~~~-~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~ 258 (482)
+++|+......... ...|+.+.|+++|.+++..++..+++.++|+..+++.+.+.+++.|+++.+..+|+++...+++.
T Consensus 267 iSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKE 346 (526)
T COG5064 267 ISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKE 346 (526)
T ss_pred HHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhh
Confidence 99999987433333 34688889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhc
Q 043116 259 ALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA---GNREQIQAVIDAGLIGPIVNLLQD 335 (482)
Q Consensus 259 a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~ 335 (482)
+||+++|+..++.++.+.+++.+++|.|+++|.+. +..+|++|||+++|..+ ..|+.++++++.|++..|+++|.-
T Consensus 347 aCWTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~ 425 (526)
T COG5064 347 ACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDV 425 (526)
T ss_pred hheeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhc
Confidence 99999999999999999999999999999999999 99999999999999997 468889999999999999999998
Q ss_pred CChhHHHHHHHHHHHhhcCCCH----------HHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 043116 336 AEFGTKKEAAWVISNATSGGTH----------EQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILK 396 (482)
Q Consensus 336 ~~~~~~~~a~~aL~~l~~~~~~----------~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~ 396 (482)
.+..+.+.++.++.|+...+.. ....++.+.|+++.+..+.++.+.++..++..++.++|.
T Consensus 426 ~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFg 496 (526)
T COG5064 426 VDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFG 496 (526)
T ss_pred cCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcc
Confidence 8877888889999999876632 234555568999999999999999999999999999984
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.7e-39 Score=343.59 Aligned_cols=430 Identities=21% Similarity=0.241 Sum_probs=356.8
Q ss_pred hhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCCh
Q 043116 24 SKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTS 103 (482)
Q Consensus 24 ~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~ 103 (482)
-..|++|.++++++++++..|..|+++|.+++... .+.+..+++.|++|.|+++|++++++.+|++|+|+|++++.+++
T Consensus 186 IeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~ 264 (2102)
T PLN03200 186 LEAGGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSK 264 (2102)
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCH
Confidence 35689999999999999999999999998888765 45788899999999999999876537999999999999999999
Q ss_pred HhHHHHHhCCChHHHHHhhCCCC---------HHHHHHHHHHHHHhhCCChh-----------hHH---HHHHhCChHHH
Q 043116 104 ENTKVAIDHGAVPIFVKLLASPS---------DDVREQAVWALGNVAGDSSR-----------CRD---FVLSQGALIPL 160 (482)
Q Consensus 104 ~~~~~~~~~g~i~~L~~ll~~~~---------~~~~~~a~~~L~~l~~~~~~-----------~~~---~~~~~~~i~~l 160 (482)
++++.+++.|+++.|++++.+++ ..++++|+|+|+|+|++.+. .++ .....|.+.++
T Consensus 265 e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayl 344 (2102)
T PLN03200 265 EAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYA 344 (2102)
T ss_pred HHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHH
Confidence 99999999999999999998654 44689999999999976433 111 12334677777
Q ss_pred HHHHcchhhhhHH----HHHHHHHHHhhcCC-CCCChhh-------------------hhhHHHHHHHHhccCChhHHHH
Q 043116 161 LAELNEHAKLSML----RTATWTLSNFCRGK-PQPPFNQ-------------------IRPALRVLAQLIRSNDEKVLTD 216 (482)
Q Consensus 161 ~~~l~~~~~~~~~----~~a~~~L~~L~~~~-~~~~~~~-------------------~~~~~~~L~~ll~~~~~~~~~~ 216 (482)
+..+ +..+...+ ..++|+|.+|+++. +...... ..++++.|+.++...+.+++..
T Consensus 345 l~l~-d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~ 423 (2102)
T PLN03200 345 LMVF-DSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEE 423 (2102)
T ss_pred HHhc-CCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHH
Confidence 7777 33333333 25679999999876 3321211 1356677888999899999999
Q ss_pred HHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCch
Q 043116 217 ACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNK 296 (482)
Q Consensus 217 ~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 296 (482)
++++|.+++.++.+..+.+.+.|+++.|+.+|.++++.++..++++|++++.++++....+.+.|++|.|+++|.++ +.
T Consensus 424 Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~ 502 (2102)
T PLN03200 424 LIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQ 502 (2102)
T ss_pred HHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CH
Confidence 99999999999889999999999999999999999999999999999999998888888999999999999999999 99
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHH-HcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhc
Q 043116 297 SIKKEVCWIISNITAGNREQIQAVI-DAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDL 375 (482)
Q Consensus 297 ~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~l 375 (482)
.++++|+|+|+|++.++++ ++.++ +.|+++.|+++|++++++.++.|+++|.+++..++.+. ++.++.+
T Consensus 503 ~iqeeAawAL~NLa~~~~q-ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~---------I~~Lv~L 572 (2102)
T PLN03200 503 KAKEDSATVLWNLCCHSED-IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT---------ISQLTAL 572 (2102)
T ss_pred HHHHHHHHHHHHHhCCcHH-HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH---------HHHHHHH
Confidence 9999999999999986545 45555 78999999999999999999999999999998766553 3667888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC-
Q 043116 376 LPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGRVV- 454 (482)
Q Consensus 376 l~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~- 454 (482)
+.++++.++..++.++.+++...+.... ..+.....|+++.|.+|+.++++++++.|.++|.+||.+...
T Consensus 573 Llsdd~~~~~~aL~vLgnIlsl~~~~d~---------~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~ 643 (2102)
T PLN03200 573 LLGDLPESKVHVLDVLGHVLSVASLEDL---------VREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDL 643 (2102)
T ss_pred hcCCChhHHHHHHHHHHHHHhhcchhHH---------HHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHH
Confidence 9999999999999999999876555321 122334579999999999999999999999999999985533
Q ss_pred ----------CCCCCCccCCCCCCcccCCcc
Q 043116 455 ----------GPQPGLTYAGNEGEDALGSNV 475 (482)
Q Consensus 455 ----------~~~~~~~~~~~~~~~~~~~~~ 475 (482)
+|+..+.+.++...+..||-.
T Consensus 644 ~~avv~agaIpPLV~LLss~~~~v~keAA~A 674 (2102)
T PLN03200 644 CESLATDEIINPCIKLLTNNTEAVATQSARA 674 (2102)
T ss_pred HHHHHHcCCHHHHHHHHhcCChHHHHHHHHH
Confidence 477777777777666666544
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=4.1e-37 Score=325.63 Aligned_cols=419 Identities=19% Similarity=0.198 Sum_probs=369.7
Q ss_pred hhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCCh
Q 043116 24 SKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTS 103 (482)
Q Consensus 24 ~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~ 103 (482)
...++++.|+.++...+.+.|..++++|.+++.++ .+..+.+.+.|++|.|+++|.+++ +.+|..|++++++++..++
T Consensus 401 ~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~nd 478 (2102)
T PLN03200 401 NHAEAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVD 478 (2102)
T ss_pred HhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCH
Confidence 35578899999999999999999999999999876 677899999999999999999998 8999999999999999889
Q ss_pred HhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116 104 ENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF 183 (482)
Q Consensus 104 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L 183 (482)
+++..+++.|++|.|+++|.+++..+++.|+|+|+|++.+.+..+..+.+.|++++|+.++ ++.+...+..++|+|.++
T Consensus 479 enr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nL 557 (2102)
T PLN03200 479 ESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKL 557 (2102)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988777888888899999999999 666889999999999999
Q ss_pred hcCCCCCC------------------------------------h--hhhhhHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 043116 184 CRGKPQPP------------------------------------F--NQIRPALRVLAQLIRSNDEKVLTDACRALAYLA 225 (482)
Q Consensus 184 ~~~~~~~~------------------------------------~--~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~ 225 (482)
+....... . ....++++.|..+++++++.++..++++|.+++
T Consensus 558 i~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~ 637 (2102)
T PLN03200 558 VRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIF 637 (2102)
T ss_pred HhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 75431110 0 002468999999999999999999999999999
Q ss_pred cCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCh-hhHHHHHhcCchHHHHHHhcCCCchhHHHHHHH
Q 043116 226 DGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDD-FQTQCIINCGALRYLLGLLIHNHNKSIKKEVCW 304 (482)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~ 304 (482)
....+..+.++..|+++.++.+|++.+.+++..++++|++++.+.. .+...+++.|+++.|++++++. +.+++..|+.
T Consensus 638 a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ 716 (2102)
T PLN03200 638 SSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVC 716 (2102)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHH
Confidence 9988888889999999999999999999999999999999997543 4445678999999999999998 9999999999
Q ss_pred HHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHH--HHHHHHcCChHHHHhcCCCCCHH
Q 043116 305 IISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQ--IKHLVREGCVKPLCDLLPCPDPQ 382 (482)
Q Consensus 305 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~--~~~l~~~~~l~~L~~ll~~~~~~ 382 (482)
+|.|++.. ++....+...|+++.|++++++++++.|++|+++|.+++..++.+. ...+...|.+..|+++|+..|.+
T Consensus 717 ALanLl~~-~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~ 795 (2102)
T PLN03200 717 ALANLLSD-PEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLD 795 (2102)
T ss_pred HHHHHHcC-chHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcc
Confidence 99999975 4456778888999999999999999999999999999998776554 35667789999999999998887
Q ss_pred HHHH--HHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 043116 383 IVTV--CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGR 452 (482)
Q Consensus 383 v~~~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 452 (482)
.... ++++|..+.+....... ..++|.-.++..++++.|.....+.+|.++++|.++|+++-.+.
T Consensus 796 ~~~~~~al~~l~~l~~~~~~~~~-----~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~ 862 (2102)
T PLN03200 796 SSATSEALEALALLARTKGGANF-----SHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQ 862 (2102)
T ss_pred hhhHHHHHHHHHHHHhhcccCCC-----CCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccC
Confidence 7665 99999999986555432 35778888888999999977779999999999999999987765
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-31 Score=231.13 Aligned_cols=362 Identities=21% Similarity=0.228 Sum_probs=316.5
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHH
Q 043116 28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTK 107 (482)
Q Consensus 28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 107 (482)
.+..+..++++.++.+|..+...+.|++-. .++.-.+++-+++..|+.-+..+. .++|..++.|++|++. .++++.
T Consensus 86 s~epvl~llqs~d~~Iq~aa~~alGnlAVn--~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT-~d~nk~ 161 (550)
T KOG4224|consen 86 SNEPVLALLQSCDKCIQCAAGEALGNLAVN--MENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLAT-FDSNKV 161 (550)
T ss_pred hhhHHHHHHhCcchhhhhhhhhhhccceec--cCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhc-cccchh
Confidence 467778888999999999999999999876 344555667778888777666666 6999999999999998 478888
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC
Q 043116 108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK 187 (482)
Q Consensus 108 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~ 187 (482)
.+...|++.+++++-++.+..++..+..+|.|++ +..+.|+.++..|++|.|+.++ +..+..++..++.+++++.-+.
T Consensus 162 kiA~sGaL~pltrLakskdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaVd~ 239 (550)
T KOG4224|consen 162 KIARSGALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAVDR 239 (550)
T ss_pred hhhhccchhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhhhH
Confidence 9999999999999888999999999999999998 5556788999999999999999 8889999999999999999876
Q ss_pred CCCChhhhh--hHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 043116 188 PQPPFNQIR--PALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGN 265 (482)
Q Consensus 188 ~~~~~~~~~--~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 265 (482)
......... .++|.|++++.++++.++-.+..+|++++... ++...+++.|.+|.++++++++.-+.......|+.|
T Consensus 240 ~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrn 318 (550)
T KOG4224|consen 240 RARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRN 318 (550)
T ss_pred HHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhh
Confidence 434333333 49999999999999999999999999999654 466679999999999999999988888889999999
Q ss_pred hhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHH
Q 043116 266 IVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAA 345 (482)
Q Consensus 266 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~ 345 (482)
++-+ +-..-.+.+.|++.+|+.+|+.+++.+++..|..+|.|++..+......+.+.|.+|.+..++.++..+++....
T Consensus 319 isih-plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseis 397 (550)
T KOG4224|consen 319 ISIH-PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEIS 397 (550)
T ss_pred cccc-cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHH
Confidence 9874 433455788999999999999997778999999999999987788888999999999999999999999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhch
Q 043116 346 WVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGE 399 (482)
Q Consensus 346 ~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~ 399 (482)
.++..++.+ ......+.+.|.++.|+.+..+.+.+++-.+..+|.++....+
T Consensus 398 ac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~ 449 (550)
T KOG4224|consen 398 ACIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVE 449 (550)
T ss_pred HHHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhH
Confidence 999999884 4556788999999999999999999999999999999986533
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-30 Score=225.53 Aligned_cols=365 Identities=20% Similarity=0.270 Sum_probs=317.3
Q ss_pred hhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCC
Q 043116 22 LQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASG 101 (482)
Q Consensus 22 ~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 101 (482)
++-.++++..|+.-+.++...+|..+..++.+++.. .+....+...|.+.++.++-++.+ ..+|..+..+|.+++.
T Consensus 121 liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh- 196 (550)
T KOG4224|consen 121 LIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH- 196 (550)
T ss_pred EEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-
Confidence 345677888899888889899999999999999998 456777889999999999888888 8999999999999986
Q ss_pred ChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhC--ChHHHHHHHcchhhhhHHHHHHHH
Q 043116 102 TSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQG--ALIPLLAELNEHAKLSMLRTATWT 179 (482)
Q Consensus 102 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~l~~~l~~~~~~~~~~~a~~~ 179 (482)
+.++|+.++..|++|.|+.++++.++.++..|..+++|++.+ ...|+.+.+.+ .++.|+.++ +++++.++..|..+
T Consensus 197 s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lA 274 (550)
T KOG4224|consen 197 SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLA 274 (550)
T ss_pred hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHH
Confidence 899999999999999999999999999999999999999855 44678888888 899999999 88889999999999
Q ss_pred HHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCC-hhhHHH
Q 043116 180 LSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRS-RLVLTA 258 (482)
Q Consensus 180 L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~v~~~ 258 (482)
|.+++.+..........|.+|.++++++++-.........|+.|++-+.- +...+.+.|++..|+.+|..++ ++++..
T Consensus 275 Lrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqch 353 (550)
T KOG4224|consen 275 LRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCH 353 (550)
T ss_pred HhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC-cccceecccchhHHHHHHhcCCchhhhhh
Confidence 99999987666666678999999999999888888888899999996644 3346888999999999998865 459999
Q ss_pred HHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCh
Q 043116 259 ALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEF 338 (482)
Q Consensus 259 a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 338 (482)
|..+|+|++...+.....+.+.|.++.+..++.++ ...++.+...+++.++.. ......+.+.|+++.|+.+..+.+.
T Consensus 354 AvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~ 431 (550)
T KOG4224|consen 354 AVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESE 431 (550)
T ss_pred HHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccch
Confidence 99999999998888888899999999999999999 888999999999999864 3446788999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHc------CChHHHHhcCCCCCHHHHHHHHHHHHHHHHh
Q 043116 339 GTKKEAAWVISNATSGGTHEQIKHLVRE------GCVKPLCDLLPCPDPQIVTVCLIGLENILKV 397 (482)
Q Consensus 339 ~~~~~a~~aL~~l~~~~~~~~~~~l~~~------~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~ 397 (482)
+++-+++.||.|++. +.++...+++. |.-..|...+.+.+--++..+.+.+..+++.
T Consensus 432 Ev~gNaAaAL~Nlss--~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~ 494 (550)
T KOG4224|consen 432 EVRGNAAAALINLSS--DVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLED 494 (550)
T ss_pred hhcccHHHHHHhhhh--hhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 999999999999998 55555555552 5556677777777777777788888888764
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.96 E-value=4.1e-26 Score=224.16 Aligned_cols=377 Identities=19% Similarity=0.214 Sum_probs=310.8
Q ss_pred hhhcccchhchhhhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHH
Q 043116 10 QFQISAPALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQF 89 (482)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~ 89 (482)
.++-+.+...+....+.+.++.|+++|.+++.++...++..|.+++.. .++...|...|+++.|.+++.+++ .+++.
T Consensus 273 LlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~ 349 (708)
T PF05804_consen 273 LLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVN 349 (708)
T ss_pred HHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHH
Confidence 344444555555677889999999999999999999999999999987 567899999999999999999998 89999
Q ss_pred HHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhh
Q 043116 90 EAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAK 169 (482)
Q Consensus 90 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~ 169 (482)
.++++|.|++. +++.|..+++.|++|.|+.++.++ ..+..|+.+|.++|.+ +..+..+...++++.++.++...++
T Consensus 350 ~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~d-d~~r~~f~~TdcIp~L~~~Ll~~~~ 425 (708)
T PF05804_consen 350 VALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMD-DEARSMFAYTDCIPQLMQMLLENSE 425 (708)
T ss_pred HHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccC-HhhHHHHhhcchHHHHHHHHHhCCC
Confidence 99999999987 789999999999999999999754 4667799999999965 4578889999999999999877777
Q ss_pred hhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc-cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhh
Q 043116 170 LSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR-SNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLL 248 (482)
Q Consensus 170 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll 248 (482)
+.+...+++.+.|++......+.....++++.|+.... ..++ ..+..++|++.+++.....+. +++..|+..+
T Consensus 426 ~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v 499 (708)
T PF05804_consen 426 EEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDGPLKELFV--DFIGDLAKIV 499 (708)
T ss_pred ccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCchHHHHHH--HHHHHHHHHh
Confidence 77888899999999998755544444577888776644 3333 245689999988754433332 5778888888
Q ss_pred CC-CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCh
Q 043116 249 GH-RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNH-NKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326 (482)
Q Consensus 249 ~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i 326 (482)
.. .+++....++++|+|+...+......+.+.+++|.+.+.|..+. .+++.-+++..++.++. ++.....+.+.|++
T Consensus 500 ~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli 578 (708)
T PF05804_consen 500 SSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLI 578 (708)
T ss_pred hcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChH
Confidence 66 46789999999999999866666666667899999999997653 45789999999998885 56767777899999
Q ss_pred HHHHHHHhc--CChhHHHHHHHHHHHhhcCCCHHHHHHHH-HcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhcc
Q 043116 327 GPIVNLLQD--AEFGTKKEAAWVISNATSGGTHEQIKHLV-REGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEK 402 (482)
Q Consensus 327 ~~L~~ll~~--~~~~~~~~a~~aL~~l~~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~ 402 (482)
+.|++++.. +|.++....++++..+..+ ++.+..+. +.++...|++++++.|+.++..|-.+|.-+.++.+...
T Consensus 579 ~~Li~LL~~kqeDdE~VlQil~~f~~ll~h--~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~ 655 (708)
T PF05804_consen 579 PTLIELLNAKQEDDEIVLQILYVFYQLLFH--EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWA 655 (708)
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHHcC--hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 999999984 5789999999999999986 34444554 57899999999999999999999999999998877654
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.96 E-value=3.2e-25 Score=217.97 Aligned_cols=391 Identities=20% Similarity=0.200 Sum_probs=318.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHH
Q 043116 30 PTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVA 109 (482)
Q Consensus 30 ~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 109 (482)
+++-.+++..+. +...++..|.|++.. ......|...|+++.|+++|++++ .++...++.+|.+++- ..+++..+
T Consensus 253 kk~~~l~~kQeq-Llrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m 327 (708)
T PF05804_consen 253 KKLQTLIRKQEQ-LLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEM 327 (708)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHH
Confidence 444444445443 444678899999987 456778889999999999999998 8999999999999988 78899999
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCC
Q 043116 110 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQ 189 (482)
Q Consensus 110 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~ 189 (482)
.+.|+++.|.+++.+++..++..++++|.|++.+ +..|..+++.|++|.++.++.+ +..+..++.+|++++.....
T Consensus 328 ~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~d---~~~~~val~iLy~LS~dd~~ 403 (708)
T PF05804_consen 328 AESGIVEKLLKLLPSENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLKD---PNFREVALKILYNLSMDDEA 403 (708)
T ss_pred HHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhCC---CchHHHHHHHHHHhccCHhh
Confidence 9999999999999999999999999999999944 5679999999999999999943 34556799999999998766
Q ss_pred CChhhhhhHHHHHHHHhc-cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 043116 190 PPFNQIRPALRVLAQLIR-SNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVT 268 (482)
Q Consensus 190 ~~~~~~~~~~~~L~~ll~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 268 (482)
.......+++|.+++++. .+++.+...++..+.|++... ...+.+++.++++.|+........ ...+..+.|++.
T Consensus 404 r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~ 479 (708)
T PF05804_consen 404 RSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQ 479 (708)
T ss_pred HHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHh
Confidence 666666789999998765 456777778888899999655 466788888889999887644332 224578999998
Q ss_pred CChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHH
Q 043116 269 GDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDA--EFGTKKEAAW 346 (482)
Q Consensus 269 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~~~~~a~~ 346 (482)
+.+.....+. +.+..|+.++..+++.+...++.++|+|+...+.+..+.+-+.+++|.+.++|..+ ++++..+++.
T Consensus 480 h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi 557 (708)
T PF05804_consen 480 HDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVI 557 (708)
T ss_pred cCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHH
Confidence 7755444343 57888888888877889999999999999876544334444689999999999853 5678999999
Q ss_pred HHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC--CCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHH
Q 043116 347 VISNATSGGTHEQIKHLVREGCVKPLCDLLPC--PDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLE 424 (482)
Q Consensus 347 aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 424 (482)
.++.++. ++..+..+.+.|+++.|++++.. +|.+++..++.++.+++...+.. ..++.+.+...
T Consensus 558 ~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr------------~~ll~~~~~~~ 623 (708)
T PF05804_consen 558 LLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETR------------EVLLKETEIPA 623 (708)
T ss_pred HHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHH------------HHHHhccchHH
Confidence 9999987 77888898999999999999975 56789999999999999876653 45567789999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhc
Q 043116 425 KIENLQSHDNNDIHEMSVKILETYW 449 (482)
Q Consensus 425 ~l~~l~~~~~~~v~~~a~~~l~~~~ 449 (482)
.+.+++++.|++|++.|..++.-..
T Consensus 624 ylidL~~d~N~~ir~~~d~~Ldii~ 648 (708)
T PF05804_consen 624 YLIDLMHDKNAEIRKVCDNALDIIA 648 (708)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988888776543
No 11
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.3e-18 Score=166.94 Aligned_cols=389 Identities=20% Similarity=0.273 Sum_probs=311.4
Q ss_pred cHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH
Q 043116 28 ILPTMVAGVWSD-DNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT 106 (482)
Q Consensus 28 ~i~~l~~~l~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 106 (482)
.+..|++.++.+ |+..|++|+.-|+.++...+.+...-+--.-++|.|+.+|+++++.++...|+++|.+++.-.|...
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 578899999866 9999999999999999877555555444556899999999999889999999999999999999999
Q ss_pred HHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhc
Q 043116 107 KVAIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCR 185 (482)
Q Consensus 107 ~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~ 185 (482)
..+++.+.||.|+.-|. -+...+.++++.+|-.|++..+ ..+.+.|.+...+..+ +.....+++.|+.+..|+|.
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998554 5778999999999999997654 3578999999999999 88889999999999999999
Q ss_pred CCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhcc---CCcHHHHHHHHhCcHHHHHHhhCCCC----hhhHHH
Q 043116 186 GKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLAD---GTNDKIQAVIEAGVCPRLVKLLGHRS----RLVLTA 258 (482)
Q Consensus 186 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~---~~~~~~~~~~~~~~l~~L~~ll~~~~----~~v~~~ 258 (482)
.-+...+..+...+|.|..+|+..|....+.++-|+..+++ +.++..+.++..+++....+++.-.. ..+...
T Consensus 324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~ 403 (1051)
T KOG0168|consen 324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG 403 (1051)
T ss_pred cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence 98888888889999999999999999999999999999984 45677888888999999999886542 335566
Q ss_pred HHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCC-------------chhHHHHHH----------------------
Q 043116 259 ALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNH-------------NKSIKKEVC---------------------- 303 (482)
Q Consensus 259 a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~-------------~~~v~~~a~---------------------- 303 (482)
.++.+..++.+.+-....+.+.++...+..++.... .|.-..+..
T Consensus 404 vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~ 483 (1051)
T KOG0168|consen 404 VIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSL 483 (1051)
T ss_pred HHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhh
Confidence 778888888887877777777777777777774310 000000000
Q ss_pred ------------------------------HHHHH----------------------HhcCCHHHHHHHHHcCChHHHHH
Q 043116 304 ------------------------------WIISN----------------------ITAGNREQIQAVIDAGLIGPIVN 331 (482)
Q Consensus 304 ------------------------------~~L~n----------------------l~~~~~~~~~~l~~~~~i~~L~~ 331 (482)
..+.. +....|+..+.+.+ .++|.|++
T Consensus 484 ~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLve 562 (1051)
T KOG0168|consen 484 IYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVE 562 (1051)
T ss_pred hcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHH
Confidence 11110 00112233333443 47888999
Q ss_pred HHhc-CChhHHHHHHHHHHHhhcCCCHHHHHHHHHc-CChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCc
Q 043116 332 LLQD-AEFGTKKEAAWVISNATSGGTHEQIKHLVRE-GCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGD 409 (482)
Q Consensus 332 ll~~-~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~-~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~ 409 (482)
++.+ .++.|+..++.||..+....+.+.+..++.. .+-..+..++.+.+..+..-++....-+++.-
T Consensus 563 VYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKl----------- 631 (1051)
T KOG0168|consen 563 VYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKL----------- 631 (1051)
T ss_pred HHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHh-----------
Confidence 8874 6899999999999999998888888887765 56667888999999999989999888888743
Q ss_pred ccHHHHHHHHhchHHHHHHhhcC
Q 043116 410 VNQYAQLVEEAEGLEKIENLQSH 432 (482)
Q Consensus 410 ~~~~~~~l~~~~~~~~l~~l~~~ 432 (482)
++.|...|++.|.+..+.+|...
T Consensus 632 pd~F~~~F~REGV~~~v~~L~~~ 654 (1051)
T KOG0168|consen 632 PDTFSPSFRREGVFHAVKQLSVD 654 (1051)
T ss_pred HHHhhhhHhhhhHHHHHHHHhcc
Confidence 34578889999999999999763
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.85 E-value=1.5e-18 Score=167.03 Aligned_cols=365 Identities=20% Similarity=0.231 Sum_probs=287.2
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh--hH
Q 043116 71 VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR--CR 148 (482)
Q Consensus 71 ~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~--~~ 148 (482)
-+|-.+.+|.+.+ +.++..|+..+..+|..+.+.+..+.+.|+|+.|+.++.+.+.+++.+|+++|.|+..+... .+
T Consensus 234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 3677889999999 89999999999999999999999999999999999999999999999999999999966554 67
Q ss_pred HHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccC--------------ChhHH
Q 043116 149 DFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSN--------------DEKVL 214 (482)
Q Consensus 149 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~--------------~~~~~ 214 (482)
-.+.+.++++.+++++....|.++++.+..+|+||++.+ .....+....++.|..-+-.+ +.++.
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence 788899999999999988899999999999999999983 455556667777766544311 25678
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhhCC------CChhhHHHHHHHHhHhhcCChh-----h---------
Q 043116 215 TDACRALAYLADGTNDKIQAVIEA-GVCPRLVKLLGH------RSRLVLTAALRTIGNIVTGDDF-----Q--------- 273 (482)
Q Consensus 215 ~~~l~~L~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~~-----~--------- 273 (482)
..+..||+|++....+..+.+.+. |.+..|+..+++ .+..-.++|..++.|++..-+. .
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 899999999998777777777776 889999888753 4566788888899998753220 0
Q ss_pred -----------------HHH----------------------HHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH
Q 043116 274 -----------------TQC----------------------IINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNR 314 (482)
Q Consensus 274 -----------------~~~----------------------l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 314 (482)
.+. ++...++..-+.+|....+..+.+.++.+|-|++.+..
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 000 11112344445555544477889999999999998432
Q ss_pred ---HH-HHHH-HHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCC------HHH
Q 043116 315 ---EQ-IQAV-IDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPD------PQI 383 (482)
Q Consensus 315 ---~~-~~~l-~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~------~~v 383 (482)
.. ...+ .+..+++.|+++++.++..+...++.+|.|++. ++.+. .++..++++.|++.|.... .++
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~--d~rnk-~ligk~a~~~lv~~Lp~~~~~~~~sedt 628 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSR--DIRNK-ELIGKYAIPDLVRCLPGSGPSTSLSEDT 628 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhcc--Cchhh-hhhhcchHHHHHHhCcCCCCCcCchHHH
Confidence 22 2334 467899999999999999999999999999998 44443 4455889999999997533 478
Q ss_pred HHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCC
Q 043116 384 VTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSH-DNNDIHEMSVKILETYWCGR 452 (482)
Q Consensus 384 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~-~~~~v~~~a~~~l~~~~~~~ 452 (482)
...++..|.+++...... ..-+.+.++++.|..|..+ .++++.+.|..++..+|...
T Consensus 629 v~~vc~tl~niv~~~~~n------------Akdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~ 686 (717)
T KOG1048|consen 629 VRAVCHTLNNIVRKNVLN------------AKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYK 686 (717)
T ss_pred HHHHHHhHHHHHHHhHHH------------HHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 888999999998654332 4445589999999999654 56789999999999888654
No 13
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.83 E-value=3.9e-17 Score=159.76 Aligned_cols=369 Identities=16% Similarity=0.193 Sum_probs=282.3
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 043116 73 PRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVL 152 (482)
Q Consensus 73 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 152 (482)
+.+...+++.+ .+....++.+|..+... ...... ..+..+.|...|.++++.+|..+++.++++..++....+.+.
T Consensus 41 ~~lf~~L~~~~-~e~v~~~~~iL~~~l~~-~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 41 PVLFDCLNTSN-REQVELICDILKRLLSA-LSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred HHHHHHHhhcC-hHHHHHHHHHHHHHHhc-cCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 34778888777 67778888899988772 233222 346789999999999999999999999999988877778888
Q ss_pred HhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHH
Q 043116 153 SQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKI 232 (482)
Q Consensus 153 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~ 232 (482)
+.++++.++..+ .+++..+...|..+|..++...+........+..+.|..++..+++.++..++.++.+++..+++..
T Consensus 117 ~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 117 DNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred CccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence 889999999999 8889999999999999999876544333345668889999988888999999999999999999999
Q ss_pred HHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchh-----HHHHHHHHHH
Q 043116 233 QAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKS-----IKKEVCWIIS 307 (482)
Q Consensus 233 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~-----v~~~a~~~L~ 307 (482)
..+.+.|+++.++..+.++|.-++.+++.+|..++. .+...+.+.+.|+++.|..++.+..... .-.......+
T Consensus 196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g 274 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG 274 (503)
T ss_pred HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence 999999999999999999999999999999999999 6666788999999999999997753222 1122335666
Q ss_pred HHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHH-HHc-----CChHHHHhcCCCCCH
Q 043116 308 NITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHL-VRE-----GCVKPLCDLLPCPDP 381 (482)
Q Consensus 308 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l-~~~-----~~l~~L~~ll~~~~~ 381 (482)
+++...+..+.... ..++..+.+++.+.|+..+..|..+++.++. +.+....+ ... .++..+.....++..
T Consensus 275 ~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~ 351 (503)
T PF10508_consen 275 NLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGST 351 (503)
T ss_pred HHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCch
Confidence 67664444333222 2467777788889999999999999999986 56666666 332 246666666777888
Q ss_pred HHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHH-HHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043116 382 QIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLE-KIENLQSHDNNDIHEMSVKILETYWCG 451 (482)
Q Consensus 382 ~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~l~~l~~~~~~~v~~~a~~~l~~~~~~ 451 (482)
+++.+++.+|.+++...+......-....+.+...+. .+... .+..+...|.++++..+..++..++.-
T Consensus 352 ~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~-~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 352 ELKLRALHALASILTSGTDRQDNDILSITESWYESLS-GSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhc-CCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 9999999999999976554211100000111222221 12334 788888999999999999999887654
No 14
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.83 E-value=2.7e-18 Score=165.36 Aligned_cols=369 Identities=20% Similarity=0.221 Sum_probs=285.1
Q ss_pred hhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCCh
Q 043116 24 SKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTS 103 (482)
Q Consensus 24 ~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~ 103 (482)
+..-.+|..+.+|.+.++.+|..|+..+..++..+ +.....+-+-|+++.|+.++.+.+ .+++.+|+++|.|+..+..
T Consensus 230 w~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~ 307 (717)
T KOG1048|consen 230 WRDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKS 307 (717)
T ss_pred ccccccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccC
Confidence 44456899999999999999999999999998876 555667778999999999999999 9999999999999998665
Q ss_pred H--hHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcc-h------------
Q 043116 104 E--NTKVAIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNE-H------------ 167 (482)
Q Consensus 104 ~--~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~------------ 167 (482)
. ++-.+.+.++++.++++++. .|.++++....+|+||+..+ .++..++.. .+..|...+.. +
T Consensus 308 ~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~ 385 (717)
T KOG1048|consen 308 TDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKA 385 (717)
T ss_pred CcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHH-HHHHHHHhhcccccccCCCCccccc
Confidence 5 88889999999999999985 89999999999999999663 455554443 46666555432 1
Q ss_pred hhhhHHHHHHHHHHHhhcCCC--CCChhhhhhHHHHHHHHhc------cCChhHHHHHHHHHHHhccCCc-----HH---
Q 043116 168 AKLSMLRTATWTLSNFCRGKP--QPPFNQIRPALRVLAQLIR------SNDEKVLTDACRALAYLADGTN-----DK--- 231 (482)
Q Consensus 168 ~~~~~~~~a~~~L~~L~~~~~--~~~~~~~~~~~~~L~~ll~------~~~~~~~~~~l~~L~~l~~~~~-----~~--- 231 (482)
.+.++..+++.||.|++.... ...+....|++..|+..++ ..|....+++.-.+.|++..-. ..
T Consensus 386 ~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~ 465 (717)
T KOG1048|consen 386 EDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQV 465 (717)
T ss_pred ccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhH
Confidence 136788899999999998652 2233345788888888776 3467788888888888874211 00
Q ss_pred -----------------------HHH----------------------HHHhCcHHHHHHhhC-CCChhhHHHHHHHHhH
Q 043116 232 -----------------------IQA----------------------VIEAGVCPRLVKLLG-HRSRLVLTAALRTIGN 265 (482)
Q Consensus 232 -----------------------~~~----------------------~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~ 265 (482)
.+. ++...++..-..+|. +.++.+.+.++.+|-|
T Consensus 466 ~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQN 545 (717)
T KOG1048|consen 466 LANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQN 545 (717)
T ss_pred hhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhh
Confidence 000 112223444344443 3466788999999999
Q ss_pred hhcCChh----hHHHH-HhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC----
Q 043116 266 IVTGDDF----QTQCI-INCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDA---- 336 (482)
Q Consensus 266 l~~~~~~----~~~~l-~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~---- 336 (482)
++.+... ....+ .+..+++.|+++|+.+ +..|.+.++.+|.|++.+ .. .+.++..++++.|++.|...
T Consensus 546 ltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d-~r-nk~ligk~a~~~lv~~Lp~~~~~~ 622 (717)
T KOG1048|consen 546 LTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRD-IR-NKELIGKYAIPDLVRCLPGSGPST 622 (717)
T ss_pred hhccCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccC-ch-hhhhhhcchHHHHHHhCcCCCCCc
Confidence 9987542 23333 5778999999999999 999999999999999874 22 35666688999999999843
Q ss_pred --ChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCC-CHHHHHHHHHHHHHHHHhchh
Q 043116 337 --EFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCP-DPQIVTVCLIGLENILKVGEA 400 (482)
Q Consensus 337 --~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~~l~~L~~l~~~~~~ 400 (482)
+.++...++.+|.+++.. +....+.+.+.+.+++|+-+..+. ++++.+.+...|..+..+.+-
T Consensus 623 ~~sedtv~~vc~tl~niv~~-~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eL 688 (717)
T KOG1048|consen 623 SLSEDTVRAVCHTLNNIVRK-NVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKEL 688 (717)
T ss_pred CchHHHHHHHHHhHHHHHHH-hHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 368889999999999975 889999999999999999988764 457888888888888765443
No 15
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.81 E-value=8.1e-16 Score=150.51 Aligned_cols=397 Identities=16% Similarity=0.184 Sum_probs=299.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHH
Q 043116 30 PTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVA 109 (482)
Q Consensus 30 ~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 109 (482)
+.++.++++.+.+....+..+|..+.... . ...+ ..+..+.|...|.+++ +.+|..+++.++++..++......+
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~-~~~l-~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~ 115 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSAL--S-PDSL-LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLL 115 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhcc--C-HHHH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHh
Confidence 33888898777777778888898888764 2 2222 5667889999999999 9999999999999999887778888
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCC
Q 043116 110 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQ 189 (482)
Q Consensus 110 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~ 189 (482)
.+.++++.++.++.+++..+...|+.+|.+++...+.. +.+...+.+..|..++ ...+..++..+..++.+++..++.
T Consensus 116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~ 193 (503)
T PF10508_consen 116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPE 193 (503)
T ss_pred cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHH
Confidence 89999999999999999999999999999999776554 4566777788888888 444666778899999999887643
Q ss_pred CC-hhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCC--h---h-hHHHHHHH
Q 043116 190 PP-FNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRS--R---L-VLTAALRT 262 (482)
Q Consensus 190 ~~-~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~--~---~-v~~~a~~~ 262 (482)
.. .....|+++.++..+.++|.-++..++.++..++. .+...+.+.+.|+++.|..++.+.+ + . .....+..
T Consensus 194 ~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f 272 (503)
T PF10508_consen 194 AAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF 272 (503)
T ss_pred HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence 33 23336899999999999999999999999999998 6667888999999999999996532 2 1 22334467
Q ss_pred HhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH-HHc-CC----hHHHHHHHhcC
Q 043116 263 IGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAV-IDA-GL----IGPIVNLLQDA 336 (482)
Q Consensus 263 L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~-~~----i~~L~~ll~~~ 336 (482)
.++++...+....... ..++..+..++.+. ++..+..|..+++.++.. .+....+ ... +. +..+.....++
T Consensus 273 ~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~ 349 (503)
T PF10508_consen 273 FGNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSG 349 (503)
T ss_pred HHHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCC
Confidence 7778775444332221 24566677777788 999999999999999854 5555555 332 23 44444444567
Q ss_pred ChhHHHHHHHHHHHhhcCCCH---HHH----H---HHHHcCChH-HHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccC
Q 043116 337 EFGTKKEAAWVISNATSGGTH---EQI----K---HLVREGCVK-PLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTD 405 (482)
Q Consensus 337 ~~~~~~~a~~aL~~l~~~~~~---~~~----~---~l~~~~~l~-~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~ 405 (482)
..++|..++.++.++...... +.. . .....+... .+.++++.|=++++..++..|..++.....
T Consensus 350 ~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg----- 424 (503)
T PF10508_consen 350 STELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWG----- 424 (503)
T ss_pred chHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHH-----
Confidence 789999999999999654432 111 1 112234455 788899999999999999999999976433
Q ss_pred CCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043116 406 NIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYW 449 (482)
Q Consensus 406 ~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 449 (482)
...+....|.++.+.+-....+.+..+.=-.+++.+.
T Consensus 425 -------~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 425 -------QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA 461 (503)
T ss_pred -------HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 2445556688888888777778777766666666666
No 16
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=3e-16 Score=142.08 Aligned_cols=424 Identities=14% Similarity=0.127 Sum_probs=314.3
Q ss_pred hchhhhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHH
Q 043116 18 LSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTN 97 (482)
Q Consensus 18 ~~~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~ 97 (482)
..+...+..+.+..|++.|..++.++.......|.+++-. .++...|.+.|++..|++++..++ ++++...++.+.|
T Consensus 295 ~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfN 371 (791)
T KOG1222|consen 295 SVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFN 371 (791)
T ss_pred hHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhh
Confidence 3445566777899999999988899998999999999987 566888999999999999999999 9999999999999
Q ss_pred HhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHH
Q 043116 98 IASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTAT 177 (482)
Q Consensus 98 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~ 177 (482)
++- +...|..+++.|.+|.+..++.+.. -...|+..+..++.++ ..+..+.....++.++..+....+.++-....
T Consensus 372 lSF-D~glr~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD-~~K~MfayTdci~~lmk~v~~~~~~~vdl~li 447 (791)
T KOG1222|consen 372 LSF-DSGLRPKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDD-DAKAMFAYTDCIKLLMKDVLSGTGSEVDLALI 447 (791)
T ss_pred ccc-cccccHHHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCc-HHHHHHHHHHHHHHHHHHHHhcCCceecHHHH
Confidence 987 6788999999999999999997643 3345888899998554 46778888889999999887878877777777
Q ss_pred HHHHHhhcCCCCCChhhhhhHHHHHHHH-hccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCC-CChhh
Q 043116 178 WTLSNFCRGKPQPPFNQIRPALRVLAQL-IRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH-RSRLV 255 (482)
Q Consensus 178 ~~L~~L~~~~~~~~~~~~~~~~~~L~~l-l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v 255 (482)
....|+|....+.+.......+..|... ++..|+- ....++|++++.......+++ .+..|...++. .++..
T Consensus 448 a~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F 521 (791)
T KOG1222|consen 448 ALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESF 521 (791)
T ss_pred HHHHHHHhccccceEEecCcchHHHHHHHhcccchH----HHHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHH
Confidence 7778898876555554444556665544 4544442 345677888777655555555 35556666654 55678
Q ss_pred HHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 043116 256 LTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNH-NKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ 334 (482)
Q Consensus 256 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~ 334 (482)
...|+++++|+...+-+..+.+.+.+.+|++-..|..+- ..++.-...-.++.++.. ......+..+++++.++++++
T Consensus 522 ~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~ 600 (791)
T KOG1222|consen 522 GLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQ 600 (791)
T ss_pred HHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHH
Confidence 899999999999877777777888899999999887653 334666666666666542 344455568999999999998
Q ss_pred c--CChhHHHHHHHHHHHhhcCCCHHHHHHHHH-cCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCccc
Q 043116 335 D--AEFGTKKEAAWVISNATSGGTHEQIKHLVR-EGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVN 411 (482)
Q Consensus 335 ~--~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~ 411 (482)
. .+.+.....+.++..+..+ ...+..++. ...-..+++++++.+.++++.|-.+|.-+........+.
T Consensus 601 a~QeDDEfV~QiiyVF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAKr------- 671 (791)
T KOG1222|consen 601 ACQEDDEFVVQIIYVFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAKR------- 671 (791)
T ss_pred hhcccchHHHHHHHHHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHHH-------
Confidence 4 5778888889999999885 344455554 456677999999999999999999999988876654432
Q ss_pred HHHHHH--HHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCC
Q 043116 412 QYAQLV--EEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGRVVGPQPGLTYAGNE 466 (482)
Q Consensus 412 ~~~~~l--~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 466 (482)
.--+.| ..+++++-.+.-+.++++. +..+..=++ |-.+-+-++.++++++.++
T Consensus 672 I~~EkFrwHNsQWLeMVEs~q~ddsEq-~dY~D~~~e-~~~dld~~~r~d~fdn~d~ 726 (791)
T KOG1222|consen 672 IAGEKFRWHNSQWLEMVESQQRDDSEQ-VDYDDEDFE-CDADLDFDHRDDGFDNNDP 726 (791)
T ss_pred HhhhhcccchhHHHHHHHHhhccchhh-ccccccccc-ccccccccccccccccCcc
Confidence 111222 3446666666656555544 344444444 5555566678888887665
No 17
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.79 E-value=5.7e-17 Score=144.74 Aligned_cols=377 Identities=16% Similarity=0.147 Sum_probs=269.3
Q ss_pred CHHHHHHHHHHHHHHhcCCC--CCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHH
Q 043116 40 DNKVQLEATTLFRKMLSFDR--NSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPI 117 (482)
Q Consensus 40 ~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 117 (482)
+..+...+..++...+..+. +..++.-+..++++.|.+...+++ .++.+++.++|+|+|.++.+.|..+.+.|+-..
T Consensus 55 ~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqi 133 (604)
T KOG4500|consen 55 SDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGAQI 133 (604)
T ss_pred cchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCcee
Confidence 44555566677777765421 112333356788899999999997 799999999999999999999999999999888
Q ss_pred HHHhhCC-------CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHc-chhhhhHHHHHHHHHHHhhcCCCC
Q 043116 118 FVKLLAS-------PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELN-EHAKLSMLRTATWTLSNFCRGKPQ 189 (482)
Q Consensus 118 L~~ll~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~L~~~~~~ 189 (482)
++++|+. .+.+....+...|.|..-++.+.+..+.+.|+++++...+- ...+....+.......++.+....
T Consensus 134 vid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e 213 (604)
T KOG4500|consen 134 VIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCE 213 (604)
T ss_pred hHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHH
Confidence 8887763 23456667788999999999999999999999999888773 223333334433333333322100
Q ss_pred --CChhhhhhHHHHHHHHhcc-CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCC-CCh-------hhHHH
Q 043116 190 --PPFNQIRPALRVLAQLIRS-NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH-RSR-------LVLTA 258 (482)
Q Consensus 190 --~~~~~~~~~~~~L~~ll~~-~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~-------~v~~~ 258 (482)
........+.-.+++++.+ -++++.+-+...+...++++.-.. .+.+.|.+..+..++.. ++. ..-..
T Consensus 214 ~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl-~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~ 292 (604)
T KOG4500|consen 214 MLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKL-SLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKR 292 (604)
T ss_pred hhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceee-ehhhcchHHHHHHHHHhcccccchHHHHHHHHh
Confidence 1111123455556666653 367788888888888887655333 46777888888888754 221 12333
Q ss_pred HHHHHhHhhcCChhhHHHHHhcC-chHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh---
Q 043116 259 ALRTIGNIVTGDDFQTQCIINCG-ALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ--- 334 (482)
Q Consensus 259 a~~~L~~l~~~~~~~~~~l~~~~-~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~--- 334 (482)
++..+.-+..+++.. +.+...+ +++.+..++.+. +......+..+++|+++.+. .+.++++.+++..|++++.
T Consensus 293 ~~el~vllltGDeSM-q~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~ 369 (604)
T KOG4500|consen 293 IAELDVLLLTGDESM-QKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEK 369 (604)
T ss_pred hhhHhhhhhcCchHH-HHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhc
Confidence 444444455555554 4455554 899999999999 99999999999999998654 4678889999999999987
Q ss_pred --cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccH
Q 043116 335 --DAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQ 412 (482)
Q Consensus 335 --~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~ 412 (482)
+++.+++..++.||.|+.. +..+...+...|+.+.+...++...|.+..+-+..++-+...-++ .
T Consensus 370 ~vdgnV~~qhA~lsALRnl~I--Pv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~-----------~ 436 (604)
T KOG4500|consen 370 DVDGNVERQHACLSALRNLMI--PVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEY-----------I 436 (604)
T ss_pred CCCccchhHHHHHHHHHhccc--cCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHH-----------H
Confidence 3678899999999999988 556677889999999999999999999998888887766543221 2
Q ss_pred HHHHHHHhchHHHHHHhhcCCC
Q 043116 413 YAQLVEEAEGLEKIENLQSHDN 434 (482)
Q Consensus 413 ~~~~l~~~~~~~~l~~l~~~~~ 434 (482)
.++....-..+++|.++..+++
T Consensus 437 a~eL~kn~~l~ekLv~Wsks~D 458 (604)
T KOG4500|consen 437 ACELAKNPELFEKLVDWSKSPD 458 (604)
T ss_pred HHHHhcCHHHHHHHHHhhhCCc
Confidence 3444444456777777766665
No 18
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=2.5e-15 Score=130.18 Aligned_cols=318 Identities=17% Similarity=0.209 Sum_probs=251.9
Q ss_pred hcCCHHHHHHhh---cCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhC
Q 043116 68 QSGVVPRFVEFL---MREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLA--SPSDDVREQAVWALGNVAG 142 (482)
Q Consensus 68 ~~g~~~~L~~ll---~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~ 142 (482)
..|..+.++.++ .+++ ..+...++.+|..+....|+. ++..++..++++|. .++.++....+..+..-|.
T Consensus 102 ~~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpdl----~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~ 176 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPDL----FDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACI 176 (461)
T ss_pred cCCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcch----hccccHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 455666665444 3555 678888999999988766654 56778899999886 4567788888888888888
Q ss_pred CChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChh----------hhhhHHHHHHHHhccC-Ch
Q 043116 143 DSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFN----------QIRPALRVLAQLIRSN-DE 211 (482)
Q Consensus 143 ~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~----------~~~~~~~~L~~ll~~~-~~ 211 (482)
..+..|+.+++.++++.+...+.......+.+.++|++..|...+..+... ...+++..|.+.++.. +|
T Consensus 177 ~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp 256 (461)
T KOG4199|consen 177 MHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP 256 (461)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence 888899999999999999988866666689999999999999876332111 1246677888888743 69
Q ss_pred hHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCC-h---hhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHH
Q 043116 212 KVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRS-R---LVLTAALRTIGNIVTGDDFQTQCIINCGALRYLL 287 (482)
Q Consensus 212 ~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~---~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~ 287 (482)
.+...++.+|..++-. ++..+.+.+.|++..+++++.+.+ . ...+.++..|..++. ++.....+++.|+.+.++
T Consensus 257 ~~L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii 334 (461)
T KOG4199|consen 257 DSLVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKII 334 (461)
T ss_pred cHHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHH
Confidence 9999999999999954 456778999999999999998743 2 355778999999886 666778899999999998
Q ss_pred HHh-cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhhcCCCHHHHHHHH
Q 043116 288 GLL-IHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDA--EFGTKKEAAWVISNATSGGTHEQIKHLV 364 (482)
Q Consensus 288 ~ll-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~~~~~a~~aL~~l~~~~~~~~~~~l~ 364 (482)
.++ ++..+|.|..+++.+++-++..+|++-..+++.|+-...++.++.. ...+++++++++.|++.. +.++...++
T Consensus 335 ~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-s~~~~~~~l 413 (461)
T KOG4199|consen 335 TLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-SAENRTILL 413 (461)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-hhhccchHH
Confidence 776 4454899999999999999998899999999999999999988843 467999999999999986 556666666
Q ss_pred HcCChHHHHhcCCCCCHHHHHHHHHHHHHH
Q 043116 365 REGCVKPLCDLLPCPDPQIVTVCLIGLENI 394 (482)
Q Consensus 365 ~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l 394 (482)
..| ++.|+..-...++.....+-.+|..+
T Consensus 414 ~~G-iE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 414 ANG-IEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred hcc-HHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 655 78888877777776666666666665
No 19
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.75 E-value=3.4e-16 Score=157.62 Aligned_cols=330 Identities=17% Similarity=0.180 Sum_probs=257.2
Q ss_pred hhhhhccHHHHHHHhcC---CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHH---HHh-------hcCC------
Q 043116 22 LQSKFEILPTMVAGVWS---DDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRF---VEF-------LMRE------ 82 (482)
Q Consensus 22 ~~~~~~~i~~l~~~l~s---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L---~~l-------l~~~------ 82 (482)
..+..|.+|.|++.+.- ++.+.+..|-.+|.|+..... +....-.+..+++.| ..+ ++..
T Consensus 230 amR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqP-D~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~ap 308 (2195)
T KOG2122|consen 230 AMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQP-DEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAP 308 (2195)
T ss_pred HHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 46788999999999973 246788889999999998753 322111222223222 222 2111
Q ss_pred CChHHHH-HHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCC------------CCHHHHHHHHHHHHHhhCCChhhHH
Q 043116 83 DYPQLQF-EAARALTNIASGTSENTKVAIDHGAVPIFVKLLAS------------PSDDVREQAVWALGNVAGDSSRCRD 149 (482)
Q Consensus 83 ~~~~v~~-~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~------------~~~~~~~~a~~~L~~l~~~~~~~~~ 149 (482)
...+=+. .|+.+|-.++- +++.|..+-+.|++.++-+++.- ....+|..+..+|.||+.++...+.
T Consensus 309 a~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa 387 (2195)
T KOG2122|consen 309 ASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKA 387 (2195)
T ss_pred cccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchh
Confidence 1012233 67778888876 79999999999999999998752 1356899999999999977655444
Q ss_pred -HHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhh--hhHHHHHHHH-hccCChhHHHHHHHHHHHhc
Q 043116 150 -FVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQI--RPALRVLAQL-IRSNDEKVLTDACRALAYLA 225 (482)
Q Consensus 150 -~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~--~~~~~~L~~l-l~~~~~~~~~~~l~~L~~l~ 225 (482)
.+...|++..++..| .....++.+..+.+|.||+.........+. .|-+-.|..+ ++.........++.+|+||+
T Consensus 388 ~LCs~rgfMeavVAQL-~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLS 466 (2195)
T KOG2122|consen 388 TLCSQRGFMEAVVAQL-ISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLS 466 (2195)
T ss_pred hhhhhhhHHHHHHHHH-hcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhh
Confidence 456678999999999 555668888999999999998644444433 4556666654 66777889999999999999
Q ss_pred cCCcHHHHHHHHh-CcHHHHHHhhCCC----ChhhHHHHHHHHhHhhc---CChhhHHHHHhcCchHHHHHHhcCCCchh
Q 043116 226 DGTNDKIQAVIEA-GVCPRLVKLLGHR----SRLVLTAALRTIGNIVT---GDDFQTQCIINCGALRYLLGLLIHNHNKS 297 (482)
Q Consensus 226 ~~~~~~~~~~~~~-~~l~~L~~ll~~~----~~~v~~~a~~~L~~l~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~~ 297 (482)
.+..++...++.- |.+..|+.+|+.. .-.+.+.+-++|.|.+. ..+.+.+.+.+++.+..|++.|++. +..
T Consensus 467 AHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLT 545 (2195)
T KOG2122|consen 467 AHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLT 545 (2195)
T ss_pred hcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceE
Confidence 8888777777776 8999999999875 34588888888888764 3667788889999999999999999 888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCC
Q 043116 298 IKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGG 355 (482)
Q Consensus 298 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~ 355 (482)
+...+|++|+||+..+++..+.+++.|.++.|..++.+.+..+..-++.+|.|+..+.
T Consensus 546 iVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 546 IVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred EeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999998764
No 20
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=4.8e-15 Score=128.49 Aligned_cols=324 Identities=12% Similarity=0.129 Sum_probs=256.8
Q ss_pred hhhhccHHHHHHHh---cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC-CChHHHHHHHHHHHHH
Q 043116 23 QSKFEILPTMVAGV---WSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMRE-DYPQLQFEAARALTNI 98 (482)
Q Consensus 23 ~~~~~~i~~l~~~l---~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~v~~~a~~~L~~l 98 (482)
.-..+..+.++-.+ .+++..+-..++.+|..+.... + .+.+..+...++.+|... ++.++....+.++..-
T Consensus 100 a~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~q-p----dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~A 174 (461)
T KOG4199|consen 100 AGKNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQ-P----DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKA 174 (461)
T ss_pred hccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCC-c----chhccccHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 33444555554443 3677888888999998887664 2 256777888999988643 2268888888999998
Q ss_pred hCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCh---------hhHHHHHHhCChHHHHHHHcchh
Q 043116 99 ASGTSENTKVAIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSS---------RCRDFVLSQGALIPLLAELNEHA 168 (482)
Q Consensus 99 ~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~---------~~~~~~~~~~~i~~l~~~l~~~~ 168 (482)
|..++.+|+.+++.++++.+...+.. +...+.+.+.|++.-+..++. ...+.+...|++..|+..+....
T Consensus 175 c~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~ 254 (461)
T KOG4199|consen 175 CIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGI 254 (461)
T ss_pred HHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccC
Confidence 88899999999999999999976653 444577778999998875442 34567788888999999997777
Q ss_pred hhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccC-Chh---HHHHHHHHHHHhccCCcHHHHHHHHhCcHHHH
Q 043116 169 KLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSN-DEK---VLTDACRALAYLADGTNDKIQAVIEAGVCPRL 244 (482)
Q Consensus 169 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~---~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L 244 (482)
++.+...++.+|..|+-.++........|++..++.++.+. +.. ....++..|+.++-. +.....+++.|+.+.+
T Consensus 255 dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~-DsvKs~IV~~gg~~~i 333 (461)
T KOG4199|consen 255 DPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS-DSVKSTIVEKGGLDKI 333 (461)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC-CchHHHHHHhcChHHH
Confidence 89999999999999998766666666689999999999874 333 446678888888844 4466779999999999
Q ss_pred HHhh--CCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 043116 245 VKLL--GHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHN-HNKSIKKEVCWIISNITAGNREQIQAVI 321 (482)
Q Consensus 245 ~~ll--~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 321 (482)
+.++ .+++|.+...++.++.-++-..+++...+++.|+-...++.++.. ....+++.|||.+.|++..+.++...++
T Consensus 334 i~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l 413 (461)
T KOG4199|consen 334 ITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILL 413 (461)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHH
Confidence 9887 346788999999999999998999999999999999988888754 3567999999999999998778777776
Q ss_pred HcCChHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 043116 322 DAGLIGPIVNLLQDAEFGTKKEAAWVISNATS 353 (482)
Q Consensus 322 ~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~ 353 (482)
. .+++.|+..-...++.....+-.+|..+-.
T Consensus 414 ~-~GiE~Li~~A~~~h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 414 A-NGIEKLIRTAKANHETCEAAAKAALRDLGC 444 (461)
T ss_pred h-ccHHHHHHHHHhcCccHHHHHHHHHHhcCc
Confidence 6 567888888888888888888888888754
No 21
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.74 E-value=7e-15 Score=131.55 Aligned_cols=403 Identities=13% Similarity=0.057 Sum_probs=286.7
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC------CChHHHHHHHHHHHHHh
Q 043116 26 FEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMRE------DYPQLQFEAARALTNIA 99 (482)
Q Consensus 26 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~------~~~~v~~~a~~~L~~l~ 99 (482)
.+.++.|.+..+|++.++.....++|.|++..+ ++.+..+.+.|+-..+++.|+.- .+.+...-+...|.|..
T Consensus 86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~ 164 (604)
T KOG4500|consen 86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYI 164 (604)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhh
Confidence 345666777777888999999999999999877 78899999999988888877632 22456677788999999
Q ss_pred CCChHhHHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCC-hhhHHHHHHhCChHHHHHHHcchhhhhHHHHH
Q 043116 100 SGTSENTKVAIDHGAVPIFVKLLA--SPSDDVREQAVWALGNVAGDS-SRCRDFVLSQGALIPLLAELNEHAKLSMLRTA 176 (482)
Q Consensus 100 ~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a 176 (482)
-++.+.+..+.+.|+++.|...+. -.+....+.+...+.|+..-. +.......+......+++++.....++....+
T Consensus 165 l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~ 244 (604)
T KOG4500|consen 165 LDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMI 244 (604)
T ss_pred CCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHH
Confidence 999999999999999999988765 466777777777777665322 22334555666777888888777778888888
Q ss_pred HHHHHHhhcCCCCCChhhhhhHHHHHHHHhcc-CChhH-------HHHHHHHHHHhccCCcHHHHHHHHhC-cHHHHHHh
Q 043116 177 TWTLSNFCRGKPQPPFNQIRPALRVLAQLIRS-NDEKV-------LTDACRALAYLADGTNDKIQAVIEAG-VCPRLVKL 247 (482)
Q Consensus 177 ~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~~-------~~~~l~~L~~l~~~~~~~~~~~~~~~-~l~~L~~l 247 (482)
..++...+.++...-.....|.+..+..+++. ++..- ...++....-+..++ +..+.+...+ +++.+.++
T Consensus 245 feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGD-eSMq~L~~~p~~l~~~~sw 323 (604)
T KOG4500|consen 245 FEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGD-ESMQKLHADPQFLDFLESW 323 (604)
T ss_pred HHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCc-hHHHHHhcCcHHHHHHHHH
Confidence 88999888876544444556888888888875 22222 222333333334444 4555666665 89999999
Q ss_pred hCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCC----CchhHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 043116 248 LGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHN----HNKSIKKEVCWIISNITAGNREQIQAVIDA 323 (482)
Q Consensus 248 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 323 (482)
+.+.+......+.-+|+|+++ .+.....+++.+++..|+..+... .+.+++..++.+|.|++-..+. ...+...
T Consensus 324 ~~S~d~~l~t~g~LaigNfaR-~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~n-ka~~~~a 401 (604)
T KOG4500|consen 324 FRSDDSNLITMGSLAIGNFAR-RDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSN-KAHFAPA 401 (604)
T ss_pred hcCCchhHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCc-hhhcccc
Confidence 999999999999999999999 555567788999999999988651 1667888999999999874333 5678899
Q ss_pred CChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHH-cCChHHHHhcCCCCCHH-HHHHHHHHHHHHHHhchhc
Q 043116 324 GLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVR-EGCVKPLCDLLPCPDPQ-IVTVCLIGLENILKVGEAE 401 (482)
Q Consensus 324 ~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~-v~~~~l~~L~~l~~~~~~~ 401 (482)
|+.+.++..++...|.+...-...+.-+... .+.....+.+ ...++.|++--+++|.. +.-.....+..+++..-..
T Consensus 402 GvteaIL~~lk~~~ppv~fkllgTlrM~~d~-qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~k 480 (604)
T KOG4500|consen 402 GVTEAILLQLKLASPPVTFKLLGTLRMIRDS-QEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYK 480 (604)
T ss_pred chHHHHHHHHHhcCCcchHHHHHHHHHHHhc-hHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhh
Confidence 9999999999999899988888888766542 2222222232 24567777777777664 5555555666666543221
Q ss_pred cccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHH
Q 043116 402 KNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVK 443 (482)
Q Consensus 402 ~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~ 443 (482)
. ....+-++||++.........+-..+..|.-
T Consensus 481 d----------v~~tvpksg~ik~~Vsm~t~~hi~mqnEalV 512 (604)
T KOG4500|consen 481 D----------VILTVPKSGGIKEKVSMFTKNHINMQNEALV 512 (604)
T ss_pred h----------hHhhccccccHHHHHHHHHHhhHHHhHHHHH
Confidence 1 2333456666666666655555554444433
No 22
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=3.9e-14 Score=141.82 Aligned_cols=394 Identities=16% Similarity=0.141 Sum_probs=275.8
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCCh--
Q 043116 26 FEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTS-- 103 (482)
Q Consensus 26 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~-- 103 (482)
.+.++.|++..+|+++..|..|+.+|..+...-++..... -..+.+.|.+.+.+++. .+|..|+++++.++...+
T Consensus 117 Pell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~--~~~l~~lf~q~~~d~s~-~vr~~a~rA~~a~~~~~~~~ 193 (1075)
T KOG2171|consen 117 PELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPH--LDDLLRLFSQTMTDPSS-PVRVAAVRALGAFAEYLENN 193 (1075)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchh--HHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHhccc
Confidence 4568889999999999999999999999887642222111 11256667777778884 499999999999887553
Q ss_pred -HhHHHHHhCCChHHHHH----hhCCCCHHHHHHHHHHHHHhhCCChhh-HHHHHHhCChHHHHHHHcc-hhhhhHHHHH
Q 043116 104 -ENTKVAIDHGAVPIFVK----LLASPSDDVREQAVWALGNVAGDSSRC-RDFVLSQGALIPLLAELNE-HAKLSMLRTA 176 (482)
Q Consensus 104 -~~~~~~~~~g~i~~L~~----ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~l~~~l~~-~~~~~~~~~a 176 (482)
..++.+. ..+|.++. .+..++......++.+|..+....+.+ +..+.+ ++...+.+..+ .-++.++..|
T Consensus 194 ~~~~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~--ii~~~l~Ia~n~~l~~~~R~~A 269 (1075)
T KOG2171|consen 194 KSEVDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ--IIQFSLEIAKNKELENSIRHLA 269 (1075)
T ss_pred hHHHHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH--HHHHHHHHhhcccccHHHHHHH
Confidence 3333333 24555544 455677777778899999998665553 333322 45555555533 3467888999
Q ss_pred HHHHHHhhcCCCCCCh---hhhhhHHHHHHHHhccC--C--------------hhHHHHHHHHHHHhccCCcHHHHHHHH
Q 043116 177 TWTLSNFCRGKPQPPF---NQIRPALRVLAQLIRSN--D--------------EKVLTDACRALAYLADGTNDKIQAVIE 237 (482)
Q Consensus 177 ~~~L~~L~~~~~~~~~---~~~~~~~~~L~~ll~~~--~--------------~~~~~~~l~~L~~l~~~~~~~~~~~~~ 237 (482)
+.++..++...|.... .....+++.++.++... | ...-..+.++|-.++.+-+.. .+-
T Consensus 270 Le~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~---~v~ 346 (1075)
T KOG2171|consen 270 LEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK---QVL 346 (1075)
T ss_pred HHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh---heh
Confidence 9999999988533222 23456777777766421 1 124455777777777654322 112
Q ss_pred hCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 043116 238 AGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQI 317 (482)
Q Consensus 238 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~ 317 (482)
.-+++.+-.++.++++.-|..++.+|+.++.+..+.....++ .+++.++..++++ ++.||..|+.+++.++.+-...+
T Consensus 347 p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~i 424 (1075)
T KOG2171|consen 347 PPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEI 424 (1075)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHH
Confidence 235677778889999999999999999999988877665443 5888999999999 99999999999999998655556
Q ss_pred HHHHHcCChHHHHHHHhc-CChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChH-HHHhcCCCCCHHHHHHHHHHHHHHH
Q 043116 318 QAVIDAGLIGPIVNLLQD-AEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVK-PLCDLLPCPDPQIVTVCLIGLENIL 395 (482)
Q Consensus 318 ~~l~~~~~i~~L~~ll~~-~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~-~L~~ll~~~~~~v~~~~l~~L~~l~ 395 (482)
+.....-+.+.|+..+++ +++.++..|+.++-|++..+.++......+ ++++ .+..++.++.+.+++.++.+|..+.
T Consensus 425 qk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA 503 (1075)
T KOG2171|consen 425 QKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVA 503 (1075)
T ss_pred HHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 776766788899998886 578999999999999998877766554333 3555 5555677888899999999999998
Q ss_pred HhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCC-HHHHHHHHHHH
Q 043116 396 KVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDN-NDIHEMSVKIL 445 (482)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~-~~v~~~a~~~l 445 (482)
...+.. ..+|...+ |+.|.+.+.+.+ ++.+....+.+
T Consensus 504 ~AA~~~--------F~pY~d~~-----Mp~L~~~L~n~~~~d~r~Lrgktm 541 (1075)
T KOG2171|consen 504 DAAQEK--------FIPYFDRL-----MPLLKNFLQNADDKDLRELRGKTM 541 (1075)
T ss_pred HHHhhh--------hHhHHHHH-----HHHHHHHHhCCCchhhHHHHhhHH
Confidence 765542 33444444 677777755444 44444444433
No 23
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=2.8e-14 Score=129.48 Aligned_cols=380 Identities=17% Similarity=0.149 Sum_probs=287.1
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHH
Q 043116 40 DNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFV 119 (482)
Q Consensus 40 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 119 (482)
...+..-|+..|.|++.. ...-..|....++..|++.|..++ .++.......|..++- -.+++..+.+.|++..|+
T Consensus 276 QeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~ 351 (791)
T KOG1222|consen 276 QEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLL 351 (791)
T ss_pred HHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHH
Confidence 355566788999999976 344566778899999999999999 7999999999999987 678888999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHH
Q 043116 120 KLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPAL 199 (482)
Q Consensus 120 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~ 199 (482)
+++....++++...+..+.|++.+. ..+..++..|.+|.+..++.++.. ...|+..+..++.++..........++
T Consensus 352 klfp~~h~dL~~~tl~LlfNlSFD~-glr~KMv~~GllP~l~~ll~~d~~---~~iA~~~lYh~S~dD~~K~MfayTdci 427 (791)
T KOG1222|consen 352 KLFPIQHPDLRKATLMLLFNLSFDS-GLRPKMVNGGLLPHLASLLDSDTK---HGIALNMLYHLSCDDDAKAMFAYTDCI 427 (791)
T ss_pred HhcCCCCHHHHHHHHHHhhhccccc-cccHHHhhccchHHHHHHhCCccc---chhhhhhhhhhccCcHHHHHHHHHHHH
Confidence 9999999999999999999999654 467888899999999999944332 334777788888876555555667889
Q ss_pred HHHHHHhc-cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcCChhhHHHH
Q 043116 200 RVLAQLIR-SNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLL-GHRSRLVLTAALRTIGNIVTGDDFQTQCI 277 (482)
Q Consensus 200 ~~L~~ll~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~l 277 (482)
+.+...+- ..+.++-...+..-.|++.+.. ..+.+++...+..|+..- +..++- ....+.|++.+.......+
T Consensus 428 ~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR-NaQlvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqHeg~tqn~F 502 (791)
T KOG1222|consen 428 KLLMKDVLSGTGSEVDLALIALCINLCLNKR-NAQLVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQHEGATQNMF 502 (791)
T ss_pred HHHHHHHHhcCCceecHHHHHHHHHHHhccc-cceEEecCcchHHHHHHHhcccchH----HHHHHHHhhhccchHHHHH
Confidence 88887654 4455555555554456774433 455677776777777653 444532 3456778887666555555
Q ss_pred HhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc--CChhHHHHHHHHHHHhhcCC
Q 043116 278 INCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQD--AEFGTKKEAAWVISNATSGG 355 (482)
Q Consensus 278 ~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~~~~~a~~aL~~l~~~~ 355 (482)
++ .+..|..++....+...-.++.++++|+.-.+-+..+.+-+...+|-+-..+.. ...++....+.+++.++.
T Consensus 503 id--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~-- 578 (791)
T KOG1222|consen 503 ID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR-- 578 (791)
T ss_pred HH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh--
Confidence 54 566777777776577788899999999987555544455568899999998884 345678888888998887
Q ss_pred CHHHHHHHHHcCChHHHHhcCCC--CCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCC
Q 043116 356 THEQIKHLVREGCVKPLCDLLPC--PDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHD 433 (482)
Q Consensus 356 ~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~ 433 (482)
+...+..+...++++.++++++. .+.+.+...+..+..+++..-. ..-++++...-..+.+|+++.
T Consensus 579 d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~t------------r~~miket~~~AylIDLMHDk 646 (791)
T KOG1222|consen 579 DLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELT------------RRLMIKETALGAYLIDLMHDK 646 (791)
T ss_pred hhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH------------HHHHHhhccchHHHHHHHhcc
Confidence 55667777788999999999974 5557777777777777766333 245677888888999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 043116 434 NNDIHEMSVKILETY 448 (482)
Q Consensus 434 ~~~v~~~a~~~l~~~ 448 (482)
|.++++.+...+.-+
T Consensus 647 N~eiRkVCDn~LdIi 661 (791)
T KOG1222|consen 647 NAEIRKVCDNALDII 661 (791)
T ss_pred cHHHHHHHHHHHHHH
Confidence 999998777666543
No 24
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=5.1e-14 Score=141.02 Aligned_cols=400 Identities=16% Similarity=0.181 Sum_probs=278.3
Q ss_pred hhhccHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCC
Q 043116 24 SKFEILPTMVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGT 102 (482)
Q Consensus 24 ~~~~~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~ 102 (482)
.....++.|...++ +.+|+++..|+-.+++++... ......-....+-..++..+.++..+.+|..-+.+++.+++..
T Consensus 33 ~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~-w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~ 111 (1075)
T KOG2171|consen 33 KTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKH-WSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARND 111 (1075)
T ss_pred cccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhc
Confidence 34447888888887 778999999999999999864 3333333444455666776666655899999999999998833
Q ss_pred hHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh-hHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHH
Q 043116 103 SENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR-CRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLS 181 (482)
Q Consensus 103 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~ 181 (482)
-.. -.-++++.|.+..+++++..|+.|+.+|+.+...-.. .+..+.+ +.+.+.+.+ .+.+..++..++.++.
T Consensus 112 l~e----~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~--l~~lf~q~~-~d~s~~vr~~a~rA~~ 184 (1075)
T KOG2171|consen 112 LPE----KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDD--LLRLFSQTM-TDPSSPVRVAAVRALG 184 (1075)
T ss_pred ccc----chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHH--HHHHHHHhc-cCCcchHHHHHHHHHH
Confidence 221 2235788899999999999999999999999743322 1111111 233444445 3444448888999998
Q ss_pred HhhcCCC--CCChhhhhhHHHHHHHHh----ccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC--Ch
Q 043116 182 NFCRGKP--QPPFNQIRPALRVLAQLI----RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR--SR 253 (482)
Q Consensus 182 ~L~~~~~--~~~~~~~~~~~~~L~~ll----~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~ 253 (482)
.++...+ ..........+|.++..+ ..+|......++.+|..++...+......+. .++...+.+..+. ++
T Consensus 185 a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~ 263 (1075)
T KOG2171|consen 185 AFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELEN 263 (1075)
T ss_pred HHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccH
Confidence 8887653 223334456666655544 4567777888888888888766654443322 3444444444443 45
Q ss_pred hhHHHHHHHHhHhhcCChhhHHH---------------------------------------------HH-----hcC--
Q 043116 254 LVLTAALRTIGNIVTGDDFQTQC---------------------------------------------II-----NCG-- 281 (482)
Q Consensus 254 ~v~~~a~~~L~~l~~~~~~~~~~---------------------------------------------l~-----~~~-- 281 (482)
.+|..|+.+|..++..-+...+. .+ .-|
T Consensus 264 ~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~ 343 (1075)
T KOG2171|consen 264 SIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK 343 (1075)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh
Confidence 67777777766665442211100 00 001
Q ss_pred -----chHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCC
Q 043116 282 -----ALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGT 356 (482)
Q Consensus 282 -----~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~ 356 (482)
+++.+-.++.+. +..-|+.+..+|+.++.|+.+.+...++ .+++.++..+.++++.||..|+.|++.++..-.
T Consensus 344 ~v~p~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~ 421 (1075)
T KOG2171|consen 344 QVLPPLFEALEAMLQST-EWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ 421 (1075)
T ss_pred hehHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc
Confidence 245566677788 8899999999999999999888877665 589999999999999999999999999998766
Q ss_pred HHHHHHHHHcCChHHHHhcCCC-CCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHH-HHHHhhcCCC
Q 043116 357 HEQIKHLVREGCVKPLCDLLPC-PDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLE-KIENLQSHDN 434 (482)
Q Consensus 357 ~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~l~~l~~~~~ 434 (482)
++..++ ..+.+++.|+..+++ .++++..++..++.++++.+.+.. ..+|...+ ++ .+..|..++.
T Consensus 422 p~iqk~-~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~-------l~pYLd~l-----m~~~l~~L~~~~~ 488 (1075)
T KOG2171|consen 422 PEIQKK-HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSI-------LEPYLDGL-----MEKKLLLLLQSSK 488 (1075)
T ss_pred HHHHHH-HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHH-------HHHHHHHH-----HHHHHHHHhcCCc
Confidence 665554 556778788888876 556899999999999999877743 34455555 44 6777778888
Q ss_pred HHHHHHHHHHHHH
Q 043116 435 NDIHEMSVKILET 447 (482)
Q Consensus 435 ~~v~~~a~~~l~~ 447 (482)
+.+++.+...|-.
T Consensus 489 ~~v~e~vvtaIas 501 (1075)
T KOG2171|consen 489 PYVQEQAVTAIAS 501 (1075)
T ss_pred hhHHHHHHHHHHH
Confidence 8888888776643
No 25
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.71 E-value=6e-15 Score=148.92 Aligned_cols=361 Identities=19% Similarity=0.206 Sum_probs=274.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC--ChHHHHHHHHHHHHHhCCChHhHHH
Q 043116 31 TMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMRED--YPQLQFEAARALTNIASGTSENTKV 108 (482)
Q Consensus 31 ~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~--~~~v~~~a~~~L~~l~~~~~~~~~~ 108 (482)
.+..++...|+. .-.+.|..++.. .+....+...|.++.|++++.-++ ..+.+..|-.+|.||....++....
T Consensus 201 sllsml~t~D~e---e~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~ 275 (2195)
T KOG2122|consen 201 SLLSMLGTDDEE---EMARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRG 275 (2195)
T ss_pred HHhhhcccCCHH---HHHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhh
Confidence 555666655554 335666667665 455777889999999999997554 2578899999999999877665433
Q ss_pred HHhCCChHHH----------HHhhCCC-----C--HHHH-HHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcc----
Q 043116 109 AIDHGAVPIF----------VKLLASP-----S--DDVR-EQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNE---- 166 (482)
Q Consensus 109 ~~~~g~i~~L----------~~ll~~~-----~--~~~~-~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~---- 166 (482)
-.+..++..| ...+... + .+-+ ..|+.+|..++ .++++|..+-+.|++..+-.++.-
T Consensus 276 RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~S-FDEEhR~aM~ELG~LqAIaeLl~vDh~m 354 (2195)
T KOG2122|consen 276 RREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLS-FDEEHRHAMNELGGLQAIAELLQVDHEM 354 (2195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhh-ccHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3322222222 2222221 1 1222 26777777877 557889999999999998887732
Q ss_pred -------hhhhhHHHHHHHHHHHhhcCCCCCChh--hhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHH-HHHHH
Q 043116 167 -------HAKLSMLRTATWTLSNFCRGKPQPPFN--QIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDK-IQAVI 236 (482)
Q Consensus 167 -------~~~~~~~~~a~~~L~~L~~~~~~~~~~--~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~ 236 (482)
.....+++++..+|.||+..+...... -..|++..++..|.+...++.......|+||+=..+.. ...+-
T Consensus 355 hgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLr 434 (2195)
T KOG2122|consen 355 HGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLR 434 (2195)
T ss_pred cCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHH
Confidence 123478999999999999987433332 33799999999999988899999999999999443333 34455
Q ss_pred HhCcHHHHHHh-hCCCChhhHHHHHHHHhHhhcCChhhHHHHHh-cCchHHHHHHhcCCC---chhHHHHHHHHHHHHhc
Q 043116 237 EAGVCPRLVKL-LGHRSRLVLTAALRTIGNIVTGDDFQTQCIIN-CGALRYLLGLLIHNH---NKSIKKEVCWIISNITA 311 (482)
Q Consensus 237 ~~~~l~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~---~~~v~~~a~~~L~nl~~ 311 (482)
+.|-+..|+.+ |....+...+..+.+|+||+.+.-+....+.. .|.+..|+.+|.+.. .-.+...|.++|.|++.
T Consensus 435 E~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS 514 (2195)
T KOG2122|consen 435 ETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSS 514 (2195)
T ss_pred hhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHh
Confidence 55877777776 45566678889999999999987766665654 488999999998752 34567788899999886
Q ss_pred ---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHH
Q 043116 312 ---GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCL 388 (482)
Q Consensus 312 ---~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l 388 (482)
.+..+++.+.+.+++..|++.|++.+..+..++|.+|.||... +++..++|.+.|++..|..++++.+..+.+-..
T Consensus 515 ~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSa 593 (2195)
T KOG2122|consen 515 LIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSA 593 (2195)
T ss_pred HhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHH
Confidence 4677778888999999999999999999999999999999986 778889999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 043116 389 IGLENILKVG 398 (482)
Q Consensus 389 ~~L~~l~~~~ 398 (482)
.+|.|++.+.
T Consensus 594 aALrNLln~R 603 (2195)
T KOG2122|consen 594 AALRNLLNFR 603 (2195)
T ss_pred HHHHHHhcCC
Confidence 9999999764
No 26
>PRK09687 putative lyase; Provisional
Probab=99.67 E-value=2.2e-14 Score=128.93 Aligned_cols=255 Identities=13% Similarity=0.092 Sum_probs=201.7
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 043116 71 VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDF 150 (482)
Q Consensus 71 ~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 150 (482)
-++.|..+|.+++ ..+|..|++.|..+.. ..+++.+..++.++++.+|..++++|+.+-.....
T Consensus 24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 24 NDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred cHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence 4788999999999 8999999999998853 24567888899999999999999999999532211
Q ss_pred HHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcH
Q 043116 151 VLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTND 230 (482)
Q Consensus 151 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~ 230 (482)
....++.|..++.+++++.++..++.+|.+++...... ...+++.+...+.++++.++..++++|+.+.. +
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~- 158 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E- 158 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H-
Confidence 11246667777658888999999999999997554212 23466667788888999999999999987652 1
Q ss_pred HHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 043116 231 KIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNIT 310 (482)
Q Consensus 231 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~ 310 (482)
..++.|+.++.++++.++..|+.+|+.+...++ ..++.|+..+.+. +..||..|+++|+.+-
T Consensus 159 --------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 159 --------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALRK 220 (280)
T ss_pred --------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHccC
Confidence 246899999999999999999999999943333 2566789999888 9999999999999863
Q ss_pred cCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCC-CCCHHHHHHHHH
Q 043116 311 AGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP-CPDPQIVTVCLI 389 (482)
Q Consensus 311 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~l~ 389 (482)
++ ..++.|++.+.+++ ++..++.+|+++-. +. .++.|..+++ ++|+.++..+.+
T Consensus 221 --~~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~---~~---------a~p~L~~l~~~~~d~~v~~~a~~ 275 (280)
T PRK09687 221 --DK---------RVLSVLIKELKKGT--VGDLIIEAAGELGD---KT---------LLPVLDTLLYKFDDNEIITKAID 275 (280)
T ss_pred --Ch---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC---Hh---------HHHHHHHHHhhCCChhHHHHHHH
Confidence 33 37888899988765 67788889888864 32 6888888886 789999999988
Q ss_pred HHHH
Q 043116 390 GLEN 393 (482)
Q Consensus 390 ~L~~ 393 (482)
+|..
T Consensus 276 a~~~ 279 (280)
T PRK09687 276 KLKR 279 (280)
T ss_pred HHhc
Confidence 8764
No 27
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.65 E-value=3.5e-13 Score=127.17 Aligned_cols=404 Identities=14% Similarity=0.074 Sum_probs=272.8
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHhCCChHhHHHHHh
Q 043116 33 VAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMRED-YPQLQFEAARALTNIASGTSENTKVAID 111 (482)
Q Consensus 33 ~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 111 (482)
+..+...+|+....|..-..+++.+. .++....+..|.++.+..+++..+ .++.+.+.+.++...+....+....+.+
T Consensus 15 l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~ 93 (678)
T KOG1293|consen 15 LYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLR 93 (678)
T ss_pred HHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHH
Confidence 33444667888888999999999886 555567899999999999988665 2567777888888888888888899999
Q ss_pred CCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhh--HHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCC
Q 043116 112 HGAVPIFVKLLASPS-DDVREQAVWALGNVAGDSSRC--RDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP 188 (482)
Q Consensus 112 ~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~ 188 (482)
.+.++.|..++.+.+ ..+++.+++++.++...++.. ........+++.+..++ ..+.......-+....+++....
T Consensus 94 ~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~~~ 172 (678)
T KOG1293|consen 94 IIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSSTKD 172 (678)
T ss_pred HhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccccch
Confidence 999999999999988 889999999999998655321 11122222344444444 32333344445555555555543
Q ss_pred CCChhhhhhHHHHHHHHhccCChhHHHHHHHHHH---HhccCCcHHHH----HHHHhCcHH--HHHHhhCCCChhhHHHH
Q 043116 189 QPPFNQIRPALRVLAQLIRSNDEKVLTDACRALA---YLADGTNDKIQ----AVIEAGVCP--RLVKLLGHRSRLVLTAA 259 (482)
Q Consensus 189 ~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~---~l~~~~~~~~~----~~~~~~~l~--~L~~ll~~~~~~v~~~a 259 (482)
........++.+.+.-++.......+..++.+++ ++..+++.... .+.+.|+.+ .+.+++++++.+.+..+
T Consensus 173 hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~s 252 (678)
T KOG1293|consen 173 HQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRS 252 (678)
T ss_pred hhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHH
Confidence 3333344677777777777778889999999999 77766654333 233446655 45566677777766777
Q ss_pred HHHHhHhhcCChh------------h-----H----------------------------------HHHHhcCchHHHHH
Q 043116 260 LRTIGNIVTGDDF------------Q-----T----------------------------------QCIINCGALRYLLG 288 (482)
Q Consensus 260 ~~~L~~l~~~~~~------------~-----~----------------------------------~~l~~~~~i~~L~~ 288 (482)
+.++-++...+.. . . ....+....+...+
T Consensus 253 l~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~e 332 (678)
T KOG1293|consen 253 LECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTE 332 (678)
T ss_pred HHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHH
Confidence 7777666554300 0 0 00000011111111
Q ss_pred Hh----------------------------------------------------cCCCchhHHHHHHHHHHHHhcCCHHH
Q 043116 289 LL----------------------------------------------------IHNHNKSIKKEVCWIISNITAGNREQ 316 (482)
Q Consensus 289 ll----------------------------------------------------~~~~~~~v~~~a~~~L~nl~~~~~~~ 316 (482)
++ ... +..+...|+-++-+++..-...
T Consensus 333 llf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~aaa~l~~~s~srsV~aL 411 (678)
T KOG1293|consen 333 LLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK-DHDFVAAALLCLKSFSRSVSAL 411 (678)
T ss_pred HHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc-cHHHHHHHHHHHHHHHHHHHHH
Confidence 11 011 3334444444444444321121
Q ss_pred HHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 043116 317 IQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILK 396 (482)
Q Consensus 317 ~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~ 396 (482)
...+-..+++.+|++++..++..++..+..+|+|++..-+ .....++..|+++.+.+++.+.++.++..++|+|.+++-
T Consensus 412 ~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f 490 (678)
T KOG1293|consen 412 RTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMF 490 (678)
T ss_pred HcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 2223346689999999999999999999999999986433 335677899999999999999999999999999999986
Q ss_pred hchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043116 397 VGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCG 451 (482)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 451 (482)
.++...+ ..+-.-=+...|..+.++++..|++.+..++.++..+
T Consensus 491 ~~de~~k-----------~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 491 NCDEEEK-----------FQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred cchHHHH-----------HHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 6555322 2211222367788999999999999999999998877
No 28
>PRK09687 putative lyase; Provisional
Probab=99.65 E-value=5.9e-14 Score=126.13 Aligned_cols=255 Identities=13% Similarity=0.075 Sum_probs=200.1
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH
Q 043116 27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT 106 (482)
Q Consensus 27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 106 (482)
-.++.|++.|.+++..++..+++.|..+-.. ..++.+..++++++ +.+|..|+++|+.+.... ..
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~------------~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~-~~- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGGQ------------DVFRLAIELCSSKN-PIERDIGADILSQLGMAK-RC- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCcc------------hHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCc-cc-
Confidence 3689999999999999999999999877533 25778889999998 999999999999996421 11
Q ss_pred HHHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhc
Q 043116 107 KVAIDHGAVPIFVKL-LASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCR 185 (482)
Q Consensus 107 ~~~~~~g~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~ 185 (482)
....++.|..+ ++++++.+|..|+.+|++++...... ....+..+...+ .+.+..++..++++|..+..
T Consensus 88 ----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~ 157 (280)
T PRK09687 88 ----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND 157 (280)
T ss_pred ----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC
Confidence 11356777776 67889999999999999997433211 011244455555 56688999999999975532
Q ss_pred CCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 043116 186 GKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGN 265 (482)
Q Consensus 186 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 265 (482)
...++.|+.++.++++.++..++.+|+.+...++ ..++.|+..+.+.++.|+..|++.|+.
T Consensus 158 ----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 158 ----------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred ----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 4588999999999999999999999999843333 245789999999999999999999998
Q ss_pred hhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCChhHHHHH
Q 043116 266 IVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ-DAEFGTKKEA 344 (482)
Q Consensus 266 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~a 344 (482)
+-. + ..++.|++.++++ + ++..++.+|+++.. +. .+|.|..++. .+|..++..+
T Consensus 219 ~~~--~---------~av~~Li~~L~~~-~--~~~~a~~ALg~ig~--~~---------a~p~L~~l~~~~~d~~v~~~a 273 (280)
T PRK09687 219 RKD--K---------RVLSVLIKELKKG-T--VGDLIIEAAGELGD--KT---------LLPVLDTLLYKFDDNEIITKA 273 (280)
T ss_pred cCC--h---------hHHHHHHHHHcCC-c--hHHHHHHHHHhcCC--Hh---------HHHHHHHHHhhCCChhHHHHH
Confidence 642 2 3688999999987 4 67889999998853 33 7888889987 7899999999
Q ss_pred HHHHHH
Q 043116 345 AWVISN 350 (482)
Q Consensus 345 ~~aL~~ 350 (482)
.++|..
T Consensus 274 ~~a~~~ 279 (280)
T PRK09687 274 IDKLKR 279 (280)
T ss_pred HHHHhc
Confidence 998863
No 29
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.4e-13 Score=129.62 Aligned_cols=318 Identities=16% Similarity=0.187 Sum_probs=215.4
Q ss_pred cCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhC----CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 043116 69 SGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDH----GAVPIFVKLLASPSDDVREQAVWALGNVAGDS 144 (482)
Q Consensus 69 ~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 144 (482)
..++|.|.++|.+++ ....+-|..+|..++.++++.-+.-... -.+|.++.+.+++++.+|..|+.++..+.-..
T Consensus 127 pelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 127 PELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred hhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC
Confidence 347899999999999 6899999999999999887765442222 25788999999999999999999999987444
Q ss_pred hhhHHHHHH-hCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 043116 145 SRCRDFVLS-QGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAY 223 (482)
Q Consensus 145 ~~~~~~~~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~ 223 (482)
+.. .... ..++..+..+- .+.+++++.+.|.++..|..-.+..-.....++++++++..++.|.++...|+.....
T Consensus 206 ~qa--l~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla 282 (885)
T KOG2023|consen 206 TQA--LYVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLA 282 (885)
T ss_pred cHH--HHHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHH
Confidence 322 1111 12455555555 7889999999999999999887777777778899999888888888888888777666
Q ss_pred hccCCcHHHHH---------------------------------------------------------------------
Q 043116 224 LADGTNDKIQA--------------------------------------------------------------------- 234 (482)
Q Consensus 224 l~~~~~~~~~~--------------------------------------------------------------------- 234 (482)
+++.+. ....
T Consensus 283 ~aeqpi-~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~D 361 (885)
T KOG2023|consen 283 LAEQPI-CKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDD 361 (885)
T ss_pred HhcCcC-cHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccc
Confidence 664321 0000
Q ss_pred -----------------------HHHhCcHHHHHHh----hCCCChhhHHHHHHHHhHhhcCChh-hHHHHHhcCchHHH
Q 043116 235 -----------------------VIEAGVCPRLVKL----LGHRSRLVLTAALRTIGNIVTGDDF-QTQCIINCGALRYL 286 (482)
Q Consensus 235 -----------------------~~~~~~l~~L~~l----l~~~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~~~i~~L 286 (482)
++...+++.++++ |.++++.+++.+..++|.++.+.-. ....+ ..++|.+
T Consensus 362 DdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~L--peLip~l 439 (885)
T KOG2023|consen 362 DDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHL--PELIPFL 439 (885)
T ss_pred cccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccch--HHHHHHH
Confidence 1112233333333 3455666777777777777754321 11111 1368899
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHH
Q 043116 287 LGLLIHNHNKSIKKEVCWIISNITA--GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLV 364 (482)
Q Consensus 287 ~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~ 364 (482)
+.+|.+. .+-||.-.||+|+..+. ...+ .+.++. .++..++..+-+++..|++.|+.|+..+-..+..+...++.
T Consensus 440 ~~~L~DK-kplVRsITCWTLsRys~wv~~~~-~~~~f~-pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~ 516 (885)
T KOG2023|consen 440 LSLLDDK-KPLVRSITCWTLSRYSKWVVQDS-RDEYFK-PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLE 516 (885)
T ss_pred HHHhccC-ccceeeeeeeeHhhhhhhHhcCC-hHhhhH-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 9999999 99999999999999976 1111 222222 25555666666889999999999999998877666655543
Q ss_pred HcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhc
Q 043116 365 REGCVKPLCDLLPCPDPQIVTVCLIGLENILKVG 398 (482)
Q Consensus 365 ~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~ 398 (482)
. ++..|+..++....+-.....++++++....
T Consensus 517 ~--IL~~l~~af~kYQ~KNLlILYDAIgtlAdsv 548 (885)
T KOG2023|consen 517 Y--ILDQLVFAFGKYQKKNLLILYDAIGTLADSV 548 (885)
T ss_pred H--HHHHHHHHHHHHhhcceehHHHHHHHHHHHH
Confidence 3 4555555554333332223345555555443
No 30
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.63 E-value=3.3e-13 Score=127.42 Aligned_cols=374 Identities=14% Similarity=0.125 Sum_probs=250.1
Q ss_pred hhhhccHHHHHHHhcCCC--HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhC
Q 043116 23 QSKFEILPTMVAGVWSDD--NKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIAS 100 (482)
Q Consensus 23 ~~~~~~i~~l~~~l~s~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 100 (482)
.-+.|+++.+..++..++ +..+...+..+..+..++ ......+.+.+.++.+++++..++...++...++++..+..
T Consensus 47 ~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~e-qd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ife 125 (678)
T KOG1293|consen 47 NIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGE-QDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFE 125 (678)
T ss_pred hhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhc-cchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHh
Confidence 347789999999998655 566655666666666666 67788999999999999999988856889999999999988
Q ss_pred CChHhHHHHH--hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHH
Q 043116 101 GTSENTKVAI--DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATW 178 (482)
Q Consensus 101 ~~~~~~~~~~--~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~ 178 (482)
.++..-.... ...+++.+..++..+.......-+....++|.. +..+..+.+.|+.+.+--++ ...+...+..+..
T Consensus 126 t~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~-~~hq~Il~Na~i~ekI~~l~-~~~s~~~RlaaL~ 203 (678)
T KOG1293|consen 126 TSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSST-KDHQLILCNAGILEKINILL-MYLSSKLRLAALL 203 (678)
T ss_pred cccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccc-chhhheeccccchhhHHHHH-HhhhHHHHHHHHH
Confidence 5433322222 223455555555424444444444555555533 35556666666666655555 5556677778888
Q ss_pred HHH---HhhcCCCCCChhhh-----hhHHH--HHHHHhccCChhHHHHHHHHHHHhccCCc-----------------HH
Q 043116 179 TLS---NFCRGKPQPPFNQI-----RPALR--VLAQLIRSNDEKVLTDACRALAYLADGTN-----------------DK 231 (482)
Q Consensus 179 ~L~---~L~~~~~~~~~~~~-----~~~~~--~L~~ll~~~~~~~~~~~l~~L~~l~~~~~-----------------~~ 231 (482)
+++ ++...++....... .++.+ .+..++++++++.+..++.++.++...+- ..
T Consensus 204 ~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i 283 (678)
T KOG1293|consen 204 CLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLI 283 (678)
T ss_pred HhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHH
Confidence 888 55555443322211 23333 33444555555555555555544432110 00
Q ss_pred HH----------------------------------HHHHhCcHH-----------------------------------
Q 043116 232 IQ----------------------------------AVIEAGVCP----------------------------------- 242 (482)
Q Consensus 232 ~~----------------------------------~~~~~~~l~----------------------------------- 242 (482)
.+ ...+....+
T Consensus 284 ~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~ 363 (678)
T KOG1293|consen 284 VQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEY 363 (678)
T ss_pred HHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhh
Confidence 00 000000000
Q ss_pred -----------------HHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHH
Q 043116 243 -----------------RLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWI 305 (482)
Q Consensus 243 -----------------~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~ 305 (482)
.+....-..+..++.++|.++.++++.-.....-+-..++..++++++..+ +..++..+.++
T Consensus 364 ~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lga 442 (678)
T KOG1293|consen 364 GLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLGA 442 (678)
T ss_pred hcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHHH
Confidence 000111123455677777777777764443333344567899999999888 99999999999
Q ss_pred HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHH
Q 043116 306 ISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVT 385 (482)
Q Consensus 306 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~ 385 (482)
|+|+..........++..|+++.+..++.+.++.++..+.|+|.++..+++......+...-....|..+.+++++.|++
T Consensus 443 i~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqe 522 (678)
T KOG1293|consen 443 ICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQE 522 (678)
T ss_pred HHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHH
Confidence 99999855556788999999999999999999999999999999999987777766666666677888899999999999
Q ss_pred HHHHHHHHHHHhchh
Q 043116 386 VCLIGLENILKVGEA 400 (482)
Q Consensus 386 ~~l~~L~~l~~~~~~ 400 (482)
.|+..|+|+.+.++.
T Consensus 523 q~fqllRNl~c~~~~ 537 (678)
T KOG1293|consen 523 QCFQLLRNLTCNSRK 537 (678)
T ss_pred HHHHHHHHhhcCcHH
Confidence 999999999876443
No 31
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.60 E-value=4.4e-13 Score=117.61 Aligned_cols=237 Identities=18% Similarity=0.170 Sum_probs=185.9
Q ss_pred hhHHHHHHHHhc-cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhH
Q 043116 196 RPALRVLAQLIR-SNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQT 274 (482)
Q Consensus 196 ~~~~~~L~~ll~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 274 (482)
.+-++.++.+|. +.||.+++.++.++++.+.. +.....+.+.|+++.+..++.++++.++..|+++|.|++...+..
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~- 88 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ- 88 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH-
Confidence 567889999998 56899999999999998754 456778888999999999999999999999999999998754433
Q ss_pred HHHHhcCchHHHHHHhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 043116 275 QCIINCGALRYLLGLLIH-NHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATS 353 (482)
Q Consensus 275 ~~l~~~~~i~~L~~ll~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~ 353 (482)
..+ +. .++.+.+.+.+ +.+..++..+..+|.|++..+ + .+.++. +.++.++.++.+++..+|..++.+|.|++.
T Consensus 89 ~~I-k~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~-~~~~l~-~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 89 EQI-KM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-D-YHHMLA-NYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHH-HH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-c-hhhhHH-hhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 323 22 46666654443 337789999999999997642 2 234443 479999999999999999999999999998
Q ss_pred CCCHHHHHHHHHcCChHHHHhcCCCC-CHHHHHHHHHHHHHHHHhchhccccCC--CCcccHHHHHHHHhc-hHHHHHHh
Q 043116 354 GGTHEQIKHLVREGCVKPLCDLLPCP-DPQIVTVCLIGLENILKVGEAEKNTDN--IGDVNQYAQLVEEAE-GLEKIENL 429 (482)
Q Consensus 354 ~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~~l~~L~~l~~~~~~~~~~~~--~~~~~~~~~~l~~~~-~~~~l~~l 429 (482)
++...+.++..+++..++.+++.+ +.++...++..+.++-....+...... ....+.....|.+.+ .-++|..+
T Consensus 164 --np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l 241 (254)
T PF04826_consen 164 --NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQAL 241 (254)
T ss_pred --CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHH
Confidence 788899999999999999999875 567888999999999665443321110 112344556777776 78899999
Q ss_pred hcCCCHHHHHHH
Q 043116 430 QSHDNNDIHEMS 441 (482)
Q Consensus 430 ~~~~~~~v~~~a 441 (482)
..|++++|+++.
T Consensus 242 ~~h~d~ev~~~v 253 (254)
T PF04826_consen 242 ANHPDPEVKEQV 253 (254)
T ss_pred HcCCCHHHhhhc
Confidence 999999998764
No 32
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.59 E-value=1.3e-12 Score=137.39 Aligned_cols=278 Identities=17% Similarity=0.167 Sum_probs=220.7
Q ss_pred hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChH
Q 043116 25 KFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSE 104 (482)
Q Consensus 25 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~ 104 (482)
....++.|++.|.++++.++..|+..|..+... +.++.|+.+|++++ +.+|..|+..|..+....+
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~------------~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~~- 684 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTPP------------GFGPALVAALGDGA-AAVRRAAAEGLRELVEVLP- 684 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcch------------hHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccC-
Confidence 334678999999999999999999999887432 26888999999988 8999999999988853111
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhh
Q 043116 105 NTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFC 184 (482)
Q Consensus 105 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~ 184 (482)
..+.|...|.++++.+|..++.+|..+.... ...++..+ .+.+..++..++.+|..+-
T Consensus 685 ---------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L-~D~d~~VR~~Av~aL~~~~ 742 (897)
T PRK13800 685 ---------PAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAAL-GDPDHRVRIEAVRALVSVD 742 (897)
T ss_pred ---------chHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHh-cCCCHHHHHHHHHHHhccc
Confidence 2367788889999999999999999875222 23456666 7888899999999998752
Q ss_pred cCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHh
Q 043116 185 RGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIG 264 (482)
Q Consensus 185 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 264 (482)
. .+.+..++.++++.++..++.+|..+..... ..++.|..+++++++.+|..|+..|+
T Consensus 743 ~-------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg 800 (897)
T PRK13800 743 D-------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALA 800 (897)
T ss_pred C-------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 1 1346778999999999999999999875432 22578889999999999999999999
Q ss_pred HhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHH
Q 043116 265 NIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEA 344 (482)
Q Consensus 265 ~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a 344 (482)
.+... +. .++.+...+.++ ++.||..|+++|+.+.. + ..++.|+.++.+++..||..|
T Consensus 801 ~~g~~-~~---------~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~--~---------~a~~~L~~~L~D~~~~VR~~A 858 (897)
T PRK13800 801 ELGCP-PD---------DVAAATAALRAS-AWQVRQGAARALAGAAA--D---------VAVPALVEALTDPHLDVRKAA 858 (897)
T ss_pred hcCCc-ch---------hHHHHHHHhcCC-ChHHHHHHHHHHHhccc--c---------chHHHHHHHhcCCCHHHHHHH
Confidence 88542 11 234578889888 89999999999987742 2 256889999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHH
Q 043116 345 AWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLEN 393 (482)
Q Consensus 345 ~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~ 393 (482)
+++|..+. +++. ..+.|...+++++.+|+..+..+|..
T Consensus 859 ~~aL~~~~--~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 859 VLALTRWP--GDPA---------ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHhccC--CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 99999972 2333 36677788999999999999988863
No 33
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.56 E-value=1.1e-12 Score=115.01 Aligned_cols=196 Identities=20% Similarity=0.239 Sum_probs=161.9
Q ss_pred HhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 043116 67 IQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR 146 (482)
Q Consensus 67 ~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 146 (482)
++.+-++.|+.+|+..++|.+++.+..++++.+. .+.+++.+.+.|+++.+..++.++++.++..|++++.|++...+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e- 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE- 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh-
Confidence 5667789999999976559999999999999877 78999999999999999999999999999999999999996654
Q ss_pred hHHHHHHhCChHHHHHHHcch-hhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 043116 147 CRDFVLSQGALIPLLAELNEH-AKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLA 225 (482)
Q Consensus 147 ~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~ 225 (482)
.+..+.. .++.++...... -+.+++..++.+|.+|+..... .....+.+|.+++++.+++..++..++++|.|++
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 3444432 466677655343 4678889999999999876433 2334678999999999999999999999999999
Q ss_pred cCCcHHHHHHHHhCcHHHHHHhhCCC-ChhhHHHHHHHHhHhhcC
Q 043116 226 DGTNDKIQAVIEAGVCPRLVKLLGHR-SRLVLTAALRTIGNIVTG 269 (482)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~l~~~ 269 (482)
.+.. ..+.++..+.+..++.++... +.++...++..+.|+..+
T Consensus 163 ~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 163 ENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred cCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 7654 556688888999999999775 577899999999999653
No 34
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.52 E-value=1.5e-12 Score=130.87 Aligned_cols=360 Identities=15% Similarity=0.192 Sum_probs=250.1
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHH
Q 043116 28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTK 107 (482)
Q Consensus 28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 107 (482)
.+..+.+-++++++.++-.|+++++++...+ +.+ .+++.+.+++.+++ +.+|..|+.++..+...+|+...
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~-------~~~-~l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~~~~ 150 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRTPE-------MAE-PLIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPDLVE 150 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-SHH-------HHH-HHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHCCHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhcccc-------hhh-HHHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHHHHH
Confidence 5777888888999999999999999987432 222 26788899999999 99999999999999876665432
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHc---chhhhhHHHHHHHHHHHhh
Q 043116 108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELN---EHAKLSMLRTATWTLSNFC 184 (482)
Q Consensus 108 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~L~ 184 (482)
.. .++.+.+++.+.++.++..|+.++..+ ..++.... ..++.+...+. ...++-.+..++.++..++
T Consensus 151 ---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-----~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~ 220 (526)
T PF01602_consen 151 ---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-----SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA 220 (526)
T ss_dssp ---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-----THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred ---HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-----hhHHHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence 22 578999999999999999999999999 22222100 23344444432 5566667777778877766
Q ss_pred cCCCCCChhhh--hhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHH
Q 043116 185 RGKPQPPFNQI--RPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRT 262 (482)
Q Consensus 185 ~~~~~~~~~~~--~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~ 262 (482)
... .... ..+++.+..++++.++.++..++.++..+..... .-..+++.+..++.++++.++..++.+
T Consensus 221 ~~~----~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~ 290 (526)
T PF01602_consen 221 PME----PEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDS 290 (526)
T ss_dssp SSS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred cCC----hhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHH
Confidence 543 1222 5688888899998899999999999998885433 223567889999999999999999999
Q ss_pred HhHhhcCChhhHHHHHhcCchHHHHHHhc-CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCChhH
Q 043116 263 IGNIVTGDDFQTQCIINCGALRYLLGLLI-HNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ-DAEFGT 340 (482)
Q Consensus 263 L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~ 340 (482)
|..++...+.. + . .....+..+. ++ +..+|..+...+..++. +..... +++.|...+. ..++++
T Consensus 291 L~~l~~~~~~~---v-~--~~~~~~~~l~~~~-d~~Ir~~~l~lL~~l~~--~~n~~~-----Il~eL~~~l~~~~d~~~ 356 (526)
T PF01602_consen 291 LSQLAQSNPPA---V-F--NQSLILFFLLYDD-DPSIRKKALDLLYKLAN--ESNVKE-----ILDELLKYLSELSDPDF 356 (526)
T ss_dssp HHHHCCHCHHH---H-G--THHHHHHHHHCSS-SHHHHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHHC--HHH
T ss_pred HHHhhcccchh---h-h--hhhhhhheecCCC-ChhHHHHHHHHHhhccc--ccchhh-----HHHHHHHHHHhccchhh
Confidence 99998766222 1 1 2223344555 55 88999999999999975 444443 5677888884 448889
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHh
Q 043116 341 KKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEA 420 (482)
Q Consensus 341 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 420 (482)
+..++.+++.++....+ .... +++.+++++...++.+...+...+.+++...+... ...
T Consensus 357 ~~~~i~~I~~la~~~~~-~~~~-----~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~-----------~~~---- 415 (526)
T PF01602_consen 357 RRELIKAIGDLAEKFPP-DAEW-----YVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELR-----------EKI---- 415 (526)
T ss_dssp HHHHHHHHHHHHHHHGS-SHHH-----HHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH-----------HHH----
T ss_pred hhhHHHHHHHHHhccCc-hHHH-----HHHHHHHhhhhccccccchHHHHHHHHhhcChhhh-----------HHH----
Confidence 99999999999864221 1122 56778888887777777777777888776543321 111
Q ss_pred chHHHHHHh-hcCCCHHHHHHHHHHHHHhcCCCC
Q 043116 421 EGLEKIENL-QSHDNNDIHEMSVKILETYWCGRV 453 (482)
Q Consensus 421 ~~~~~l~~l-~~~~~~~v~~~a~~~l~~~~~~~~ 453 (482)
++.+.++ ..-.++++...+.|++..|.+...
T Consensus 416 --l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~ 447 (526)
T PF01602_consen 416 --LKKLIELLEDISSPEALAAAIWILGEYGELIE 447 (526)
T ss_dssp --HHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHT
T ss_pred --HHHHHHHHHHhhHHHHHHHHHhhhcccCCccc
Confidence 2333333 335677788888888888765443
No 35
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.52 E-value=9.5e-12 Score=130.90 Aligned_cols=276 Identities=16% Similarity=0.197 Sum_probs=216.4
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 043116 70 GVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRD 149 (482)
Q Consensus 70 g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 149 (482)
..++.|+..|.+++ +.+|..|+..|+.+.. .+.++.|...|.++++.+|..|+.+|..+....+
T Consensus 621 ~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~---- 684 (897)
T PRK13800 621 PSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP---- 684 (897)
T ss_pred hhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----
Confidence 45788999999999 9999999999998743 2467899999999999999999999988853221
Q ss_pred HHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCc
Q 043116 150 FVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTN 229 (482)
Q Consensus 150 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~ 229 (482)
..+.+...+ ++.++.++..++.+|..+.... ...++..+.++++.++..++.+|..+..
T Consensus 685 ------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~--- 743 (897)
T PRK13800 685 ------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD--- 743 (897)
T ss_pred ------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC---
Confidence 124566667 5678899999999888865321 2356778999999999999999997631
Q ss_pred HHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHH
Q 043116 230 DKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNI 309 (482)
Q Consensus 230 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl 309 (482)
.+.+...+.++++.||..++..|+.+..... ..++.|..+++++ ++.||..|+.+|+++
T Consensus 744 -----------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 744 -----------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALAEL 802 (897)
T ss_pred -----------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHHhc
Confidence 1346678899999999999999998865322 2367788999988 899999999999988
Q ss_pred hcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHH
Q 043116 310 TAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLI 389 (482)
Q Consensus 310 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~ 389 (482)
... . ..++.++..+.++++.+|..|+.+|..+.. + ..++.|..+++++++.|+..+..
T Consensus 803 g~~--~--------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~---~---------~a~~~L~~~L~D~~~~VR~~A~~ 860 (897)
T PRK13800 803 GCP--P--------DDVAAATAALRASAWQVRQGAARALAGAAA---D---------VAVPALVEALTDPHLDVRKAAVL 860 (897)
T ss_pred CCc--c--------hhHHHHHHHhcCCChHHHHHHHHHHHhccc---c---------chHHHHHHHhcCCCHHHHHHHHH
Confidence 532 1 133557778889999999999999987643 1 25688999999999999999999
Q ss_pred HHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 043116 390 GLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILET 447 (482)
Q Consensus 390 ~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~ 447 (482)
+|..+- . + ....+.|...+++++.+|+..|.+.|+.
T Consensus 861 aL~~~~-~-~--------------------~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 861 ALTRWP-G-D--------------------PAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHhccC-C-C--------------------HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 999861 0 0 1124556778889999999999988863
No 36
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.52 E-value=8.9e-12 Score=125.29 Aligned_cols=329 Identities=19% Similarity=0.202 Sum_probs=245.8
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHH
Q 043116 28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTK 107 (482)
Q Consensus 28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 107 (482)
..+.+++++.+++...+.-+--.+..+...+ ++ .+.- +++.+.+-+.+++ +.++..|++++++++. ++...
T Consensus 43 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~~---~~~l--~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~~ 113 (526)
T PF01602_consen 43 LFMEVIKLISSKDLELKRLGYLYLSLYLHED-PE---LLIL--IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMAE 113 (526)
T ss_dssp THHHHHCTCSSSSHHHHHHHHHHHHHHTTTS-HH---HHHH--HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc-hh---HHHH--HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchhh
Confidence 5778888888999999998888888887764 22 1111 4677888889999 9999999999999974 66554
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC
Q 043116 108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK 187 (482)
Q Consensus 108 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~ 187 (482)
. +++.+.+++.++++.+|..|+.++..+....|.. +... .++.+..++ .+.++.++..|+.++..+ ...
T Consensus 114 ~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~~ 182 (526)
T PF01602_consen 114 P-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KCN 182 (526)
T ss_dssp H-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HCT
T ss_pred H-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-ccC
Confidence 3 4688899999999999999999999998665543 2222 477788888 778899999999999999 222
Q ss_pred CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhh
Q 043116 188 PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIV 267 (482)
Q Consensus 188 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 267 (482)
+..........++.+.+++...+|-.+..+++.+..++...+..... ..+++.+..++.+.++.+...++.++..+.
T Consensus 183 ~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~ 259 (526)
T PF01602_consen 183 DDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLS 259 (526)
T ss_dssp HHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 11111445677777788888899999999999999998766544311 456788888888889999999999999887
Q ss_pred cCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCChhHHHHHHH
Q 043116 268 TGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ-DAEFGTKKEAAW 346 (482)
Q Consensus 268 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~a~~ 346 (482)
...+ .-..+++.+..++.++ ++.+|..++..|..++...+... . .....+..+. +++..++..++.
T Consensus 260 ~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v----~--~~~~~~~~l~~~~d~~Ir~~~l~ 326 (526)
T PF01602_consen 260 PSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAV----F--NQSLILFFLLYDDDPSIRKKALD 326 (526)
T ss_dssp SSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHH----G--THHHHHHHHHCSSSHHHHHHHHH
T ss_pred cchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhh----h--hhhhhhheecCCCChhHHHHHHH
Confidence 6333 2235788999999988 99999999999999987553322 2 2222233444 889999999999
Q ss_pred HHHHhhcCCCHHHHHHHHHcCChHHHHhcC-CCCCHHHHHHHHHHHHHHHHhchh
Q 043116 347 VISNATSGGTHEQIKHLVREGCVKPLCDLL-PCPDPQIVTVCLIGLENILKVGEA 400 (482)
Q Consensus 347 aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~~l~~L~~l~~~~~~ 400 (482)
.|..++. +.+... +++.|...+ ..++++++..++..+..+......
T Consensus 327 lL~~l~~---~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~ 373 (526)
T PF01602_consen 327 LLYKLAN---ESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP 373 (526)
T ss_dssp HHHHH-----HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS
T ss_pred HHhhccc---ccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc
Confidence 9999985 445444 567777777 455888999999888888765543
No 37
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.50 E-value=9.6e-13 Score=104.02 Aligned_cols=119 Identities=34% Similarity=0.544 Sum_probs=110.3
Q ss_pred HHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 043116 65 KVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 144 (482)
Q Consensus 65 ~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 144 (482)
.+++.|+++.+++++.+++ ++++..++++|++++..+++....+.+.|+++.+++++.++++.++..++++|++++...
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 4678899999999999998 899999999999999988999999999999999999999999999999999999999888
Q ss_pred hhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhc
Q 043116 145 SRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCR 185 (482)
Q Consensus 145 ~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~ 185 (482)
+..+..+.+.|+++.++..+ .+.+..+++.++|+|.+++.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 77788888999999999999 66688999999999999873
No 38
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.49 E-value=5.7e-11 Score=111.14 Aligned_cols=324 Identities=13% Similarity=0.082 Sum_probs=229.3
Q ss_pred hccHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHh-----cCCHHHHHHhhcCCCChHHHHHHHHHHHHHh
Q 043116 26 FEILPTMVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQ-----SGVVPRFVEFLMREDYPQLQFEAARALTNIA 99 (482)
Q Consensus 26 ~~~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~ 99 (482)
......++.+++ ..++++....+..+..++... +.....+.+ .+....++.+|..++ .-+...|+.+|+.+.
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~ 129 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLA 129 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHH
Confidence 346777888887 556888888999999999875 444555554 356788888998888 789999999999998
Q ss_pred CCChHhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchh-hhhHHHHHH
Q 043116 100 SGTSENTKVAIDHGAVPIFVKLLASP-SDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHA-KLSMLRTAT 177 (482)
Q Consensus 100 ~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-~~~~~~~a~ 177 (482)
..++.........-..+.+...+.++ +...+..|+.++..+... +.+|..+.+.++++.|+.++.... +.+++.+++
T Consensus 130 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~l 208 (429)
T cd00256 130 CFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSI 208 (429)
T ss_pred hcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHH
Confidence 75443221111111334555666543 467778889999999855 457888888999999999996544 668899999
Q ss_pred HHHHHhhcCCCCCChhhhhhHHHHHHHHhcc-CChhHHHHHHHHHHHhccCC------cHHHHHHHHhCcHHHHHHhhCC
Q 043116 178 WTLSNFCRGKPQPPFNQIRPALRVLAQLIRS-NDEKVLTDACRALAYLADGT------NDKIQAVIEAGVCPRLVKLLGH 250 (482)
Q Consensus 178 ~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~~~~~~l~~L~~l~~~~------~~~~~~~~~~~~l~~L~~ll~~ 250 (482)
.+++-|+...+........++++.++.+++. ....+.+-++.++.|+.... ......+++.|+.+ ++..|..
T Consensus 209 l~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~ 287 (429)
T cd00256 209 FCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQ 287 (429)
T ss_pred HHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhc
Confidence 9999999886533333446899999999985 46788999999999999643 12334566667655 4444433
Q ss_pred ---CChhhHHHHHH-------HHhHhhcC--------------Ch---------hhHHHHHhc--CchHHHHHHhcCCCc
Q 043116 251 ---RSRLVLTAALR-------TIGNIVTG--------------DD---------FQTQCIINC--GALRYLLGLLIHNHN 295 (482)
Q Consensus 251 ---~~~~v~~~a~~-------~L~~l~~~--------------~~---------~~~~~l~~~--~~i~~L~~ll~~~~~ 295 (482)
.|+++....-. .+..++.. +| +....+-+. .++..|+++|..+.+
T Consensus 288 rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d 367 (429)
T cd00256 288 RKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVD 367 (429)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCC
Confidence 34443322111 11111110 11 111222222 357889999965558
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 043116 296 KSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATS 353 (482)
Q Consensus 296 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~ 353 (482)
+.+..-||.=++.++...|..+..+-+.|+=..+++++.++|++++.+|+.|+..+..
T Consensus 368 ~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 368 PIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred cceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 8899999999999999878877777789999999999999999999999999998854
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=99.48 E-value=5.7e-10 Score=112.54 Aligned_cols=369 Identities=12% Similarity=0.091 Sum_probs=234.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHH
Q 043116 29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKV 108 (482)
Q Consensus 29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 108 (482)
++.+++++.++|..++......+.+.+... ++... -.++.|.+-+++++ +.+|..|+++++++.. ++....
T Consensus 70 F~dVvk~~~S~d~elKKLvYLYL~~ya~~~-pelal-----LaINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e~ 140 (746)
T PTZ00429 70 FVDVVKLAPSTDLELKKLVYLYVLSTARLQ-PEKAL-----LAVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLEY 140 (746)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccC-hHHHH-----HHHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHHH
Confidence 455566666777777777777777776543 22111 13677888888888 9999999999998854 444332
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCC
Q 043116 109 AIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP 188 (482)
Q Consensus 109 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~ 188 (482)
+++.+.+.+.+.++.+|..|+.++.++...+++ .+.+.+.++.+..++ .+.++.++.+|+.+|..+....+
T Consensus 141 -----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~~ 211 (746)
T PTZ00429 141 -----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYGS 211 (746)
T ss_pred -----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhCc
Confidence 357778888999999999999999999865553 344566788888877 78899999999999999987654
Q ss_pred CCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 043116 189 QPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVT 268 (482)
Q Consensus 189 ~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 268 (482)
. ........+..++..+...++-.+..++.+|......++... ..++..+.+.|++.++.|...|++++.++..
T Consensus 212 ~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~ 285 (746)
T PTZ00429 212 E-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLAS 285 (746)
T ss_pred h-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 3 234456667777777777777788888888866442222211 2567788889999999999999999999876
Q ss_pred CC-hhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH-------------------------H
Q 043116 269 GD-DFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVI-------------------------D 322 (482)
Q Consensus 269 ~~-~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-------------------------~ 322 (482)
.. +....... ..+...++.++ ++ +++++..+...|.-+....+......+ .
T Consensus 286 ~~~~~~~~~~~-~rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lan 362 (746)
T PTZ00429 286 RCSQELIERCT-VRVNTALLTLS-RR-DAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVT 362 (746)
T ss_pred cCCHHHHHHHH-HHHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcC
Confidence 43 22222221 12334455553 34 566777777666655544343222111 0
Q ss_pred ----cCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhc
Q 043116 323 ----AGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVG 398 (482)
Q Consensus 323 ----~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~ 398 (482)
..++..|.++..+.+.+++..++.+++.++..- +... ..++..|+++++.+.. +...++..+..+++..
T Consensus 363 e~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~-~~~a-----~~cV~~Ll~ll~~~~~-~v~e~i~vik~Ilrky 435 (746)
T PTZ00429 363 PSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKV-DSVA-----PDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKY 435 (746)
T ss_pred cccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC-hHHH-----HHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHC
Confidence 013334444444556677777777777776532 2222 2366777777765433 3334566666665432
Q ss_pred hhccccCCCCcccHHHHHHHHhchHHHHHHh---hcCCCHHHHHHHHHHHHHhcC
Q 043116 399 EAEKNTDNIGDVNQYAQLVEEAEGLEKIENL---QSHDNNDIHEMSVKILETYWC 450 (482)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l---~~~~~~~v~~~a~~~l~~~~~ 450 (482)
+. .. .+..|... ..-.+++.+....|++-.|-+
T Consensus 436 P~-------------~~------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~ 471 (746)
T PTZ00429 436 PE-------------LL------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCD 471 (746)
T ss_pred cc-------------HH------HHHHHHHhhcccccccHHHHHHHHHHHHhhHh
Confidence 11 10 12333321 223456666777888887754
No 40
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.46 E-value=2.8e-12 Score=101.34 Aligned_cols=118 Identities=31% Similarity=0.469 Sum_probs=109.6
Q ss_pred HHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH
Q 043116 235 VIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNR 314 (482)
Q Consensus 235 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 314 (482)
+.+.|+++.++.++.++++.++..++++|++++...+.....+.+.|+++.+++++.++ ++.++..++|+|+|++...+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence 56779999999999999999999999999999998788888888999999999999998 99999999999999999877
Q ss_pred HHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 043116 315 EQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATS 353 (482)
Q Consensus 315 ~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~ 353 (482)
.....+.+.|+++.+++++.+.+..++..++++|.+++.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 777788889999999999999999999999999999863
No 41
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=4.7e-12 Score=119.48 Aligned_cols=319 Identities=18% Similarity=0.212 Sum_probs=217.7
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHh----CChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCC
Q 043116 113 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQ----GALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP 188 (482)
Q Consensus 113 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~----~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~ 188 (482)
.++|.|..+|.+++....+-|..+|..+|.+++..-+.-... -.+|.+++.. +++++.++..|+.++..+....+
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~-~h~spkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFF-KHPSPKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHH-hCCChhHHHHHHhhhhheeecCc
Confidence 367899999999999999999999999998876532221111 2477788888 77799999999999988877654
Q ss_pred CCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 043116 189 QPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVT 268 (482)
Q Consensus 189 ~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 268 (482)
..-...+..++..+..+-+++++++|..+|+++..+.+..+++..-.. .++++.++..-++.++.|..+||.....++.
T Consensus 207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl-~~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHL-DNIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccch-HHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 444445578888888888899999999999999999977665433222 2677888888888999999999999999997
Q ss_pred CChhhHHHHH--hcCchHHHHHHhcCCCch------------------hHHH----------------------------
Q 043116 269 GDDFQTQCII--NCGALRYLLGLLIHNHNK------------------SIKK---------------------------- 300 (482)
Q Consensus 269 ~~~~~~~~l~--~~~~i~~L~~ll~~~~~~------------------~v~~---------------------------- 300 (482)
... ....+. -..++|.|+.-+.+++.. ++|-
T Consensus 286 qpi-~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD 364 (885)
T KOG2023|consen 286 QPI-CKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD 364 (885)
T ss_pred CcC-cHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence 542 111111 124666666554332110 0000
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH----hcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhc
Q 043116 301 -EVCWIISNITAGNREQIQAVIDAGLIGPIVNLL----QDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDL 375 (482)
Q Consensus 301 -~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll----~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~l 375 (482)
..-|-|..++...-+....++...+++.++.++ .+++..+|+.++-|++.++.++..-....+-+ .++.|+++
T Consensus 365 ~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lpe--Lip~l~~~ 442 (885)
T KOG2023|consen 365 AFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPE--LIPFLLSL 442 (885)
T ss_pred ccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHH--HHHHHHHH
Confidence 011444444433333344444445555555555 46788999999999999998654444444333 78999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 043116 376 LPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETY 448 (482)
Q Consensus 376 l~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~ 448 (482)
+.+..+-||..++|.|+++....-.... ..-++.. ++-|..-.-+.|.+|+++|-.....+
T Consensus 443 L~DKkplVRsITCWTLsRys~wv~~~~~------~~~f~pv------L~~ll~~llD~NK~VQEAAcsAfAtl 503 (885)
T KOG2023|consen 443 LDDKKPLVRSITCWTLSRYSKWVVQDSR------DEYFKPV------LEGLLRRLLDSNKKVQEAACSAFATL 503 (885)
T ss_pred hccCccceeeeeeeeHhhhhhhHhcCCh------HhhhHHH------HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999998765433210 1112222 33344445568899999988777644
No 42
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.9e-10 Score=110.52 Aligned_cols=367 Identities=17% Similarity=0.198 Sum_probs=243.9
Q ss_pred ccHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChH
Q 043116 27 EILPTMVAGVWSD--DNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSE 104 (482)
Q Consensus 27 ~~i~~l~~~l~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~ 104 (482)
..+..++...++. +..+++.|+.+|.+-....+.-...+.-..-++...++.-++++ .+++..|+.||..|..-..+
T Consensus 172 ~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d-~~i~~aa~~ClvkIm~LyY~ 250 (859)
T KOG1241|consen 172 DILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPD-EEIQVAAFQCLVKIMSLYYE 250 (859)
T ss_pred HHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCc-HHHHHHHHHHHHHHHHHHHH
Confidence 3678888888744 57889999999998876642222333334445666777778888 89999999999999886677
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh----------------hHHHH--HHhCChHHHHHHHcc
Q 043116 105 NTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR----------------CRDFV--LSQGALIPLLAELNE 166 (482)
Q Consensus 105 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~----------------~~~~~--~~~~~i~~l~~~l~~ 166 (482)
+-...+....+..-+.-++++++++.-+++...+++|.+.-. +.... .-.+++|.|+.+|.+
T Consensus 251 ~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~k 330 (859)
T KOG1241|consen 251 FMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTK 330 (859)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHh
Confidence 766666666777777888899999999999999999842111 00000 012467888888854
Q ss_pred h-h-----hhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCc
Q 043116 167 H-A-----KLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGV 240 (482)
Q Consensus 167 ~-~-----~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~ 240 (482)
. + +-..-..|..||.-++... ...+...++|++-+-++++|+.-+..+..+++.+..+.......-+-.+.
T Consensus 331 qde~~d~DdWnp~kAAg~CL~l~A~~~---~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qa 407 (859)
T KOG1241|consen 331 QDEDDDDDDWNPAKAAGVCLMLFAQCV---GDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQA 407 (859)
T ss_pred CCCCcccccCcHHHHHHHHHHHHHHHh---cccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhh
Confidence 2 1 1123333444444433321 12234578888888889999999999999999999887765555555688
Q ss_pred HHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhH-HHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHH-
Q 043116 241 CPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQT-QCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQ- 318 (482)
Q Consensus 241 l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~- 318 (482)
++.++.++.+++--++..+.|+++.++...++.+ ........++.++..|.+ .|++-..+||++.+++.+.++...
T Consensus 408 lp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~Laea~~eA~~s 485 (859)
T KOG1241|consen 408 LPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVASNVCWAFISLAEAAYEAAVS 485 (859)
T ss_pred hHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999998888899999999999998766432 223334667777777765 578999999999999853222110
Q ss_pred --------HHHHcCChHHHHHHHhc---CChhHHHHHHHHHHHhhcCCCHHHHHHHHHc--CChHHHHh-----cCCCCC
Q 043116 319 --------AVIDAGLIGPIVNLLQD---AEFGTKKEAAWVISNATSGGTHEQIKHLVRE--GCVKPLCD-----LLPCPD 380 (482)
Q Consensus 319 --------~l~~~~~i~~L~~ll~~---~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~--~~l~~L~~-----ll~~~~ 380 (482)
.+.+ .++..|+..-+. .+..+|..|..||..+..+++......+... -.+..|-+ .++..+
T Consensus 486 ~~qt~~~t~~y~-~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~d 564 (859)
T KOG1241|consen 486 NGQTDPATPFYE-AIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLAD 564 (859)
T ss_pred CCCCCccchhHH-HHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh
Confidence 1111 134444444442 3567999999999999998765554443221 11222222 333333
Q ss_pred H----HHHHHHHHHHHHHHHhchh
Q 043116 381 P----QIVTVCLIGLENILKVGEA 400 (482)
Q Consensus 381 ~----~v~~~~l~~L~~l~~~~~~ 400 (482)
. ++....+..|..+.+....
T Consensus 565 r~q~~eLQs~Lc~~Lq~i~rk~~~ 588 (859)
T KOG1241|consen 565 RAQLNELQSLLCNTLQSIIRKVGS 588 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc
Confidence 2 3555555666666655443
No 43
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.41 E-value=1.2e-10 Score=108.87 Aligned_cols=283 Identities=15% Similarity=0.155 Sum_probs=204.3
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh
Q 043116 26 FEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN 105 (482)
Q Consensus 26 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~ 105 (482)
......++.+++.+|.-++..|+..|..+.+... .........-+++.+...+++++....+..|+.+|..+.. .++.
T Consensus 100 ~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~-~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~ 177 (429)
T cd00256 100 KKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGL-AKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEY 177 (429)
T ss_pred ccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCc-cccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchH
Confidence 4567788889998999999999999999988642 2211111222445666677665436788889999999988 7899
Q ss_pred HHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116 106 TKVAIDHGAVPIFVKLLASP--SDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF 183 (482)
Q Consensus 106 ~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L 183 (482)
|..+.+.++++.|..+|+.. +..++..++.+++-++...+ ........+.++.++.++.....+.+.+.++.+|.|+
T Consensus 178 R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nl 256 (429)
T cd00256 178 RFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNL 256 (429)
T ss_pred HHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999753 56788899999999986654 4556667789999999998888999999999999999
Q ss_pred hcCCCCC------ChhhhhhHHHHHHHHhcc---CChhHHHHHHHHH-------HHhcc------------------C-C
Q 043116 184 CRGKPQP------PFNQIRPALRVLAQLIRS---NDEKVLTDACRAL-------AYLAD------------------G-T 228 (482)
Q Consensus 184 ~~~~~~~------~~~~~~~~~~~L~~ll~~---~~~~~~~~~l~~L-------~~l~~------------------~-~ 228 (482)
....... ...+....++.++..|.. .|+++....-..- ..++. + +
T Consensus 257 l~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~s 336 (429)
T cd00256 257 ISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKS 336 (429)
T ss_pred hhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCC
Confidence 9864211 112223233444444442 3555544322221 12221 1 0
Q ss_pred c----HHHHHHHHh--CcHHHHHHhhC-CCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHH
Q 043116 229 N----DKIQAVIEA--GVCPRLVKLLG-HRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKE 301 (482)
Q Consensus 229 ~----~~~~~~~~~--~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~ 301 (482)
+ ++...+-+. .++..|+.+|. +.++.+..-||.=|+.++...|.....+-+.|+=..++.++.++ +++||.+
T Consensus 337 e~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~-d~~Vr~e 415 (429)
T cd00256 337 EKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHE-DPNVRYE 415 (429)
T ss_pred chHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCC-CHHHHHH
Confidence 0 122223333 36788889984 56788889999999999998887777777789999999999999 9999999
Q ss_pred HHHHHHHHhcC
Q 043116 302 VCWIISNITAG 312 (482)
Q Consensus 302 a~~~L~nl~~~ 312 (482)
|..++..++.+
T Consensus 416 AL~avQklm~~ 426 (429)
T cd00256 416 ALLAVQKLMVH 426 (429)
T ss_pred HHHHHHHHHHh
Confidence 99999887643
No 44
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=4.7e-10 Score=109.03 Aligned_cols=344 Identities=16% Similarity=0.156 Sum_probs=252.2
Q ss_pred hccHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChH
Q 043116 26 FEILPTMVAGVWSD-DNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSE 104 (482)
Q Consensus 26 ~~~i~~l~~~l~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~ 104 (482)
...+|.|+.+|+.+ +++++..|+++|.+|+..- +.....+++.+.+|.|+.-|..-.+-++-++++.+|-.|++..+
T Consensus 210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~- 287 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP- 287 (1051)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc-
Confidence 34689999999955 6999999999999999876 55677788999999999887766668999999999999987443
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116 105 NTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-SRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF 183 (482)
Q Consensus 105 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L 183 (482)
..+++.|.+...+.++.--+..+++.|+.+..|.|..- +.--..+++ .+|.|..++ ...|....+.++-++..+
T Consensus 288 --~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri 362 (1051)
T KOG0168|consen 288 --KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLL-SYQDKKPIESVCICLTRI 362 (1051)
T ss_pred --HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHH
Confidence 56889999999999998888899999999999999432 222244554 688888888 777788888888888888
Q ss_pred hcCC-CCCChh---hhhhHHHHHHHHhccCC----hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCC---
Q 043116 184 CRGK-PQPPFN---QIRPALRVLAQLIRSND----EKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRS--- 252 (482)
Q Consensus 184 ~~~~-~~~~~~---~~~~~~~~L~~ll~~~~----~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~--- 252 (482)
+... +..... ...+++.-..+++.... ..+....++.+..++.+.+-....+...++...+..+|...+
T Consensus 363 ~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~ 442 (1051)
T KOG0168|consen 363 ADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSA 442 (1051)
T ss_pred HHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCc
Confidence 8765 222221 22577888888877442 445666778888888887777777777777777777664210
Q ss_pred -----------hhhHHHHHHHHhHh------------------------------------------------hc-----
Q 043116 253 -----------RLVLTAALRTIGNI------------------------------------------------VT----- 268 (482)
Q Consensus 253 -----------~~v~~~a~~~L~~l------------------------------------------------~~----- 268 (482)
|.-.......+..+ ..
T Consensus 443 nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~ 522 (1051)
T KOG0168|consen 443 NASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINED 522 (1051)
T ss_pred ccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccC
Confidence 11000111111000 00
Q ss_pred ---------------------CChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHH-cCC
Q 043116 269 ---------------------GDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA-GNREQIQAVID-AGL 325 (482)
Q Consensus 269 ---------------------~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~-~~~ 325 (482)
+.++..+.+. ..+++.|+++..+.-++.||..+..+|..+.. .+.+.+..+++ ..+
T Consensus 523 ~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~-~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~v 601 (1051)
T KOG0168|consen 523 TGTSRKQQDKLNGSAREGLLKNQPELLQSFG-KDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNV 601 (1051)
T ss_pred cccchhhhhhcCCchhhhhhhcCHHHHHHHH-HHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchH
Confidence 0111111111 13688899999888899999999999999987 67888888886 445
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCC
Q 043116 326 IGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP 377 (482)
Q Consensus 326 i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~ 377 (482)
-..+-.++.+.+..+..-|+....-|...-..-+...+..+|++..+-++..
T Consensus 602 SS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 602 SSHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred HHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence 5667778888999888888888887777656667778888999888888876
No 45
>PTZ00429 beta-adaptin; Provisional
Probab=99.38 E-value=1.3e-08 Score=102.84 Aligned_cols=295 Identities=16% Similarity=0.086 Sum_probs=208.6
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHH-HHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChH
Q 043116 26 FEILPTMVAGVWSDDNKVQLEATT-LFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSE 104 (482)
Q Consensus 26 ~~~i~~l~~~l~s~~~~~~~~a~~-~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~ 104 (482)
.|-+..|-+.|++.+...+..+++ .+..++.+. +.. .+++.+++++.+++ .+++.-....+.+++...++
T Consensus 31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~--DvS------~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pe 101 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGR--DVS------YLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPE 101 (746)
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC--Cch------HHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChH
Confidence 345667778888888887888877 445555543 222 25777888999998 89999999999999876665
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhh
Q 043116 105 NTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFC 184 (482)
Q Consensus 105 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~ 184 (482)
..- -.++.|.+-+.++++.+|..|+++++++- .+..-+. .+..+.+.+ .+.++-+++.|+.++..+.
T Consensus 102 lal-----LaINtl~KDl~d~Np~IRaLALRtLs~Ir--~~~i~e~-----l~~~lkk~L-~D~~pYVRKtAalai~Kly 168 (746)
T PTZ00429 102 KAL-----LAVNTFLQDTTNSSPVVRALAVRTMMCIR--VSSVLEY-----TLEPLRRAV-ADPDPYVRKTAAMGLGKLF 168 (746)
T ss_pred HHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHcCC--cHHHHHH-----HHHHHHHHh-cCCCHHHHHHHHHHHHHHH
Confidence 422 24688888899999999999999999984 2332222 355666667 6788999999999999998
Q ss_pred cCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHh
Q 043116 185 RGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIG 264 (482)
Q Consensus 185 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 264 (482)
...|.. ....+.++.+..++.+.++.+..+|+.+|..+....+... -...+.+..++..+..-++-.+...+.+|.
T Consensus 169 ~~~pel--v~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l--~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~ 244 (746)
T PTZ00429 169 HDDMQL--FYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI--ESSNEWVNRLVYHLPECNEWGQLYILELLA 244 (746)
T ss_pred hhCccc--ccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh--HHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 876532 2235678889999999999999999999999986654332 223455677777777767777777777775
Q ss_pred HhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHH
Q 043116 265 NIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAG-NREQIQAVIDAGLIGPIVNLLQDAEFGTKKE 343 (482)
Q Consensus 265 ~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~ 343 (482)
...-.++... ..++..+...|++. ++.|.-+|+.++.++... .++....... .+.+.++.+ .+.+++++..
T Consensus 245 ~y~P~~~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L-~ss~~eiqyv 316 (746)
T PTZ00429 245 AQRPSDKESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTL-SRRDAETQYI 316 (746)
T ss_pred hcCCCCcHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHh-hCCCccHHHH
Confidence 4322222211 24677888889998 899999999999998753 2343333222 233455555 3566788888
Q ss_pred HHHHHHHhhcC
Q 043116 344 AAWVISNATSG 354 (482)
Q Consensus 344 a~~aL~~l~~~ 354 (482)
++..|..++..
T Consensus 317 aLr~I~~i~~~ 327 (746)
T PTZ00429 317 VCKNIHALLVI 327 (746)
T ss_pred HHHHHHHHHHH
Confidence 87777666553
No 46
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=4.8e-10 Score=107.86 Aligned_cols=364 Identities=15% Similarity=0.168 Sum_probs=231.5
Q ss_pred cHHHHHHHhcCCCH-HHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhh-cCCCChHHHHHHHHHHHHHhCCChHh
Q 043116 28 ILPTMVAGVWSDDN-KVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFL-MREDYPQLQFEAARALTNIASGTSEN 105 (482)
Q Consensus 28 ~i~~l~~~l~s~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll-~~~~~~~v~~~a~~~L~~l~~~~~~~ 105 (482)
.++.|+.....+.+ .++..++.++..++.+-.++ .-.--.+.++..+++-. +.+.+..+|..|+.+|.|-..-...+
T Consensus 130 li~~lv~nv~~~~~~~~k~~slealGyice~i~pe-vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~n 208 (859)
T KOG1241|consen 130 LIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE-VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKAN 208 (859)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH-HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHh
Confidence 45556666655554 47888999999999875322 21112344555555554 34444789999999999865422212
Q ss_pred HHHHHhCC-ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhh
Q 043116 106 TKVAIDHG-AVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFC 184 (482)
Q Consensus 106 ~~~~~~~g-~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~ 184 (482)
-..=.+.+ ++...++.-++++.+++..|..||..|..-.-..-..-+....+..-+.-+ .++++++.-.+....+++|
T Consensus 209 F~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~am-ks~~deValQaiEFWstic 287 (859)
T KOG1241|consen 209 FNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAM-KSDNDEVALQAIEFWSTIC 287 (859)
T ss_pred hccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHH
Confidence 11112223 446677788889999999999999998632222112222223444445556 4677788888888888888
Q ss_pred cCCCC------------CC---hh----hhhhHHHHHHHHhcc-------CChhHHHHHHHHHHHhccCCcHHHHHHHHh
Q 043116 185 RGKPQ------------PP---FN----QIRPALRVLAQLIRS-------NDEKVLTDACRALAYLADGTNDKIQAVIEA 238 (482)
Q Consensus 185 ~~~~~------------~~---~~----~~~~~~~~L~~ll~~-------~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~ 238 (482)
..... .. .- ....++|.|+++|.. +++.....+-.||.-+++...+. ++.
T Consensus 288 eEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~- 363 (859)
T KOG1241|consen 288 EEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP- 363 (859)
T ss_pred HHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc---chh-
Confidence 64211 11 11 125788888888864 23566677777776666332211 222
Q ss_pred CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 043116 239 GVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQ 318 (482)
Q Consensus 239 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 318 (482)
.+++.+-.-++++++.-+..+..+++.+..+.+.....-+-.+++|.++.++.++ .-.++..++|+++.++.+.++.+-
T Consensus 364 ~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e~~~ 442 (859)
T KOG1241|consen 364 HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPEAII 442 (859)
T ss_pred hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchhhcc
Confidence 3455555567889999999999999999987766655556668999999999977 888999999999999986665432
Q ss_pred HH-HHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCH---------HHHHHHHHcCChHHHHhcCCC---CCHHHHH
Q 043116 319 AV-IDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTH---------EQIKHLVREGCVKPLCDLLPC---PDPQIVT 385 (482)
Q Consensus 319 ~l-~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~---------~~~~~l~~~~~l~~L~~ll~~---~~~~v~~ 385 (482)
.- .....++.++.-+. +.|.+..+++|++.+++..... ...+.+. ..+..|+..-+. .+..+|.
T Consensus 443 n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~--~ii~~Ll~~tdr~dgnqsNLR~ 519 (859)
T KOG1241|consen 443 NQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYE--AIIGSLLKVTDRADGNQSNLRS 519 (859)
T ss_pred cHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHH--HHHHHHHhhccccccchhhHHH
Confidence 21 12345555555555 5688999999999999852100 0000100 023333333332 3346888
Q ss_pred HHHHHHHHHHHhchhc
Q 043116 386 VCLIGLENILKVGEAE 401 (482)
Q Consensus 386 ~~l~~L~~l~~~~~~~ 401 (482)
.+.++|..+++.++..
T Consensus 520 AAYeALmElIk~st~~ 535 (859)
T KOG1241|consen 520 AAYEALMELIKNSTDD 535 (859)
T ss_pred HHHHHHHHHHHcCcHH
Confidence 9999999999877664
No 47
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=3.1e-08 Score=95.09 Aligned_cols=218 Identities=17% Similarity=0.177 Sum_probs=160.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHH
Q 043116 29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKV 108 (482)
Q Consensus 29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 108 (482)
-+-++.+|++..|-++..|...+.++.-.. ++..+ ..+|.|..-|.+++ |.++..|+.+++.++..+|++.-
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL- 217 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYL- 217 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCcccc-
Confidence 466788888888888888888888877654 22222 25788888888888 89999999999999887776532
Q ss_pred HHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC
Q 043116 109 AIDHGAVPIFVKLLASP-SDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK 187 (482)
Q Consensus 109 ~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~ 187 (482)
..-|.+.+++-+. +.=+....+..+++++--.|..... .++++..++..+.-..+...++.++...+...
T Consensus 218 ----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 218 ----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred ----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence 2347777777643 3334445777888887555554443 57899999966666677777766655442222
Q ss_pred C-CCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHh
Q 043116 188 P-QPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266 (482)
Q Consensus 188 ~-~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 266 (482)
. ........-+++.|-.++.+.|+..+.-.+.+++.+...++...+.. -+.++++|.+.++++|..|+..+.-+
T Consensus 289 g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gm 363 (877)
T KOG1059|consen 289 GMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYGM 363 (877)
T ss_pred CCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHHH
Confidence 1 13344456788888899999999999999999999998777655433 36789999999999999999999888
Q ss_pred hc
Q 043116 267 VT 268 (482)
Q Consensus 267 ~~ 268 (482)
..
T Consensus 364 Vs 365 (877)
T KOG1059|consen 364 VS 365 (877)
T ss_pred hh
Confidence 75
No 48
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.22 E-value=2.8e-09 Score=96.32 Aligned_cols=309 Identities=15% Similarity=0.083 Sum_probs=209.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHH
Q 043116 29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKV 108 (482)
Q Consensus 29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 108 (482)
-+..+..+..++.-+...+.+++..+++.. +....-..-.-....+-..+++.++++...-|++||..+.. -++.|..
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g-~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~ 193 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFG-NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYA 193 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccchhhe
Confidence 677889999999988888999999999875 22211101111133344555554436888889999999998 7899999
Q ss_pred HHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcC
Q 043116 109 AIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG 186 (482)
Q Consensus 109 ~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~ 186 (482)
++..+++..++..+.+ .+-.++.+.+.+++.++..++. .+.+...+.++.|..++..+..+.+.+.++.++.|++..
T Consensus 194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~-ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHA-AEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHH-HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999998842 4577888999999999865544 466677889999999998888999999999999999998
Q ss_pred CCCCChh------hhhhHHHHHHHHhcc---CChhHHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhhCCCChhhH
Q 043116 187 KPQPPFN------QIRPALRVLAQLIRS---NDEKVLTDACRALAYLADGTNDKIQAVIEA-GVCPRLVKLLGHRSRLVL 256 (482)
Q Consensus 187 ~~~~~~~------~~~~~~~~L~~ll~~---~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~~~~~v~ 256 (482)
.+..... +..+-++..++.|.. .|+++....-..-..+-.. .+.+... ....-+..-.-+-+|..+
T Consensus 273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~s----vq~LsSFDeY~sEl~sG~L~WSP~Hk 348 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNS----VQDLSSFDEYKSELRSGRLEWSPVHK 348 (442)
T ss_pred CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH----HHhhccHHHHHHHHHhCCcCCCcccc
Confidence 7533222 223334444444442 3555554443332222211 0000000 000111111111122222
Q ss_pred HHHHHHHhHhhcCChhhHHHHHhc--CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 043116 257 TAALRTIGNIVTGDDFQTQCIINC--GALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ 334 (482)
Q Consensus 257 ~~a~~~L~~l~~~~~~~~~~l~~~--~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~ 334 (482)
..-.| + +....+-+. .++..|+++|+.+.+|.+-.-||.=++.+.++.|+....+.+.|+=..+++++.
T Consensus 349 ~e~FW------~---eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Lln 419 (442)
T KOG2759|consen 349 SEKFW------R---ENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLN 419 (442)
T ss_pred ccchH------H---HhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhc
Confidence 22111 0 111112211 367889999999878999999999999999999998888889999999999999
Q ss_pred cCChhHHHHHHHHHHHhhc
Q 043116 335 DAEFGTKKEAAWVISNATS 353 (482)
Q Consensus 335 ~~~~~~~~~a~~aL~~l~~ 353 (482)
++|++|+.+|+.|+..+..
T Consensus 420 h~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 420 HEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred CCCchHHHHHHHHHHHHHh
Confidence 9999999999999988865
No 49
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.2e-08 Score=91.21 Aligned_cols=190 Identities=19% Similarity=0.223 Sum_probs=159.7
Q ss_pred CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHH
Q 043116 209 NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLG 288 (482)
Q Consensus 209 ~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ 288 (482)
.+.+-+..++.-|..+++.-+ ....+...|++..++..+.+++..+|..|+++|+..+.++|.....+++.|+++.|+.
T Consensus 95 ~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 456677788888888885543 4556888899999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc--CChhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 043116 289 LLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQD--AEFGTKKEAAWVISNATSGGTHEQIKHLVRE 366 (482)
Q Consensus 289 ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~ 366 (482)
++.+..+..+|..|.++++.+.+..+.....+...+....|.+++++ .+..++..++..+..++.. .......+...
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~-~~s~~d~~~~~ 252 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE-DKSDEDIASSL 252 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh-hhhhhhHHHHh
Confidence 99988677899999999999999888888899998889999999998 6778888899999999874 33444455566
Q ss_pred CChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchh
Q 043116 367 GCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEA 400 (482)
Q Consensus 367 ~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~ 400 (482)
+....+..+....+.++.+.++.++-.+......
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~ 286 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLSELST 286 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhh
Confidence 7777788888888889999988888777655444
No 50
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=5.7e-09 Score=93.13 Aligned_cols=183 Identities=19% Similarity=0.217 Sum_probs=154.9
Q ss_pred hHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHH
Q 043116 85 PQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAEL 164 (482)
Q Consensus 85 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l 164 (482)
.+-++.|+.-|..++. +-++...+...|++..++..+.+.+.++|+.|+|+|+..+..+|..+..+++.|+++.|+..+
T Consensus 97 le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred HHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 7788999999998886 788889999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhHHHHHHHHHHHhhcCCCCCChh-hhhhHHHHHHHHhcc--CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcH
Q 043116 165 NEHAKLSMLRTATWTLSNFCRGKPQPPFN-QIRPALRVLAQLIRS--NDEKVLTDACRALAYLADGTNDKIQAVIEAGVC 241 (482)
Q Consensus 165 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~-~~~~~~~~L~~ll~~--~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l 241 (482)
..+.+..++..|+++++.+.+..+..... ...+....|...+.+ .+...+..++..+..+..........+...++-
T Consensus 176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~ 255 (342)
T KOG2160|consen 176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQ 255 (342)
T ss_pred ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhh
Confidence 77777788899999999999998444333 334668899999998 567788999999999997666555555556777
Q ss_pred HHHHHhhCCCChhhHHHHHHHHhHhhc
Q 043116 242 PRLVKLLGHRSRLVLTAALRTIGNIVT 268 (482)
Q Consensus 242 ~~L~~ll~~~~~~v~~~a~~~L~~l~~ 268 (482)
..+..+....+.++...++..+..+..
T Consensus 256 ~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 256 RVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 777777777888888888777766654
No 51
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=1.8e-07 Score=90.97 Aligned_cols=324 Identities=15% Similarity=0.180 Sum_probs=238.7
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCh---
Q 043116 71 VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSS--- 145 (482)
Q Consensus 71 ~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~--- 145 (482)
.++.|+.-+.+..-.+-|+.|++.|-.+++ ++|..+... ++++|+..|+. .|+++...++.++.++..+..
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 577888777766657889999999999975 777766654 58999999875 578999999999999985442
Q ss_pred ---h----------hHH-HHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhh---hhhHHHHHHHHhcc
Q 043116 146 ---R----------CRD-FVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQ---IRPALRVLAQLIRS 208 (482)
Q Consensus 146 ---~----------~~~-~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~---~~~~~~~L~~ll~~ 208 (482)
. ..+ .+...+.|..++..+ ...|-.++..++..+.++.+..|...... ..-++..++.+|++
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 1 112 233346677788888 77788999999999999998875433222 25788899999999
Q ss_pred CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC----ChhhHHHHHHHHhHhhcCChhhHHHHHhcCchH
Q 043116 209 NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR----SRLVLTAALRTIGNIVTGDDFQTQCIINCGALR 284 (482)
Q Consensus 209 ~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~----~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~ 284 (482)
....+|..++..|..++..++...+.+.-.+++..|..++... ..-|...|+..|.|+...+......+.+.+.+|
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~ 257 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP 257 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence 9999999999999999988876666666668999999999652 235888999999999999999889899999999
Q ss_pred HHHHHhcCCC--c--------hhH--HHHHHHHHHHHhc-CCH----HHH-HHHHHcCChHHHHHHHhcC--ChhHHHHH
Q 043116 285 YLLGLLIHNH--N--------KSI--KKEVCWIISNITA-GNR----EQI-QAVIDAGLIGPIVNLLQDA--EFGTKKEA 344 (482)
Q Consensus 285 ~L~~ll~~~~--~--------~~v--~~~a~~~L~nl~~-~~~----~~~-~~l~~~~~i~~L~~ll~~~--~~~~~~~a 344 (482)
.|.++|.... + .+| -..+..++..+.. +++ ... +.+...+++..|+.++.++ ..+++..+
T Consensus 258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltes 337 (970)
T KOG0946|consen 258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTES 337 (970)
T ss_pred HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHH
Confidence 9998886421 1 111 1345666666665 222 222 3455789999999998865 56788999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHcCC----------hHHHHhcCCC-CCHHHHHHHHHHHHHHHHhchh
Q 043116 345 AWVISNATSGGTHEQIKHLVREGC----------VKPLCDLLPC-PDPQIVTVCLIGLENILKVGEA 400 (482)
Q Consensus 345 ~~aL~~l~~~~~~~~~~~l~~~~~----------l~~L~~ll~~-~~~~v~~~~l~~L~~l~~~~~~ 400 (482)
+.++.+.+.. +......+.+..+ +-.++.+..+ ..+..|.+++.++..++.....
T Consensus 338 iitvAevVRg-n~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~ 403 (970)
T KOG0946|consen 338 IITVAEVVRG-NARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDD 403 (970)
T ss_pred HHHHHHHHHh-chHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchh
Confidence 9999999874 5555555554311 1123333333 4457899999999998865444
No 52
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.11 E-value=9.2e-08 Score=92.20 Aligned_cols=398 Identities=14% Similarity=0.164 Sum_probs=247.2
Q ss_pred chhhhhhhcc---HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCC-hHHHHHHHHH
Q 043116 19 SLNLQSKFEI---LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDY-PQLQFEAARA 94 (482)
Q Consensus 19 ~~~~~~~~~~---i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~-~~v~~~a~~~ 94 (482)
...+..++|. +.+++.-++++.+..+...+....++...-+.....+-.++-.+..++..++.++. ..+-.....+
T Consensus 705 tv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~ 784 (1172)
T KOG0213|consen 705 TVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGT 784 (1172)
T ss_pred HHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHH
Confidence 3445667774 56667777788888888888888877765433334444455566666666665542 2223333333
Q ss_pred HHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH--HHHHHhCChHHHHHHHcchhhhhH
Q 043116 95 LTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCR--DFVLSQGALIPLLAELNEHAKLSM 172 (482)
Q Consensus 95 L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~i~~l~~~l~~~~~~~~ 172 (482)
+.+-... ..+..+ ..++..++..|++.++.+|.+|+..++.++.--..+. +.+...| -.|...+ ....+++
T Consensus 785 V~~~lg~--r~kpyl--pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEyl-geeypEv 857 (1172)
T KOG0213|consen 785 VVNALGG--RVKPYL--PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYL-GEEYPEV 857 (1172)
T ss_pred HHHHHhh--ccccch--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhc-CcccHHH
Confidence 3332221 001111 1355677888999999999999999999873222221 1122212 1244444 5667788
Q ss_pred HHHHHHHHHHhhcCC-CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC
Q 043116 173 LRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR 251 (482)
Q Consensus 173 ~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~ 251 (482)
.-..+.++..++... -.....-+.+++|.|..+|++....++.+++..++.++...++....--=..+.--|+.+|+..
T Consensus 858 LgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkah 937 (1172)
T KOG0213|consen 858 LGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAH 937 (1172)
T ss_pred HHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHH
Confidence 877777777776543 1122233578999999999999999999999999999987765432111112334577778888
Q ss_pred ChhhHHHHHHHHhHhhcCC--hhhHHHHH----------------------h-c---CchHHHHHHhcCCCchhHHHHHH
Q 043116 252 SRLVLTAALRTIGNIVTGD--DFQTQCII----------------------N-C---GALRYLLGLLIHNHNKSIKKEVC 303 (482)
Q Consensus 252 ~~~v~~~a~~~L~~l~~~~--~~~~~~l~----------------------~-~---~~i~~L~~ll~~~~~~~v~~~a~ 303 (482)
+.++|.+|..+++.++..- .+....++ + + .++|.|+.=.+.+ +..|+.-..
T Consensus 938 kK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP-e~nVQnGVL 1016 (1172)
T KOG0213|consen 938 KKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP-EANVQNGVL 1016 (1172)
T ss_pred HHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc-hhHHHHhHH
Confidence 8899999999888887532 11111111 1 1 2455566555666 777888888
Q ss_pred HHHHHHhcCCHHH-HHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCC-----
Q 043116 304 WIISNITAGNREQ-IQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP----- 377 (482)
Q Consensus 304 ~~L~nl~~~~~~~-~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~----- 377 (482)
.+++.+.....+. ..++. -+.|.|-+.|.+.|.--+..|+.++.+++.+.. -.|+.+.++.+|.
T Consensus 1017 kalsf~FeyigemskdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~--------g~g~eda~iHLLN~iWpN 1086 (1172)
T KOG0213|consen 1017 KALSFMFEYIGEMSKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP--------GTGCEDALIHLLNLIWPN 1086 (1172)
T ss_pred HHHHHHHHHHHHHhhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC--------CcCcHHHHHHHHHHhhhh
Confidence 8888776522221 22222 267778888888888899999999999987521 2244444444443
Q ss_pred --CCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 043116 378 --CPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGRV 453 (482)
Q Consensus 378 --~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 453 (482)
.+.|.+.....+++..+-.. +-..-.+..+.+=+-|+...|++..=++.+.++....
T Consensus 1087 Ile~sPhviqa~~e~~eg~r~~-------------------Lg~~~~~~Y~~QGLFHParkVR~~yw~vyn~my~~~~ 1145 (1172)
T KOG0213|consen 1087 ILETSPHVIQAFDEAMEGLRVA-------------------LGPQAMLKYCLQGLFHPARKVRKRYWTVYNSMYHGSQ 1145 (1172)
T ss_pred hcCCChHHHHHHHHHHHHHHHH-------------------hchHHHHHHHHHhccCcHHHHHHHHHHHHHhHhhccc
Confidence 56677777766666665421 1111124455555678999999888888887665553
No 53
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=5.2e-07 Score=87.82 Aligned_cols=324 Identities=16% Similarity=0.180 Sum_probs=239.5
Q ss_pred hhccHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC-CChHHHHHHHHHHHHHhCCC
Q 043116 25 KFEILPTMVAGVWSD-DNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMRE-DYPQLQFEAARALTNIASGT 102 (482)
Q Consensus 25 ~~~~i~~l~~~l~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~v~~~a~~~L~~l~~~~ 102 (482)
....|+.|...+.+. -++-+..|+..|..++... +..+.. -+++.|++.|+.+ .++++...++.++.++..++
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkY----R~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~d 94 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKY----REEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHD 94 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHH----HHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC
Confidence 344688999988754 4788999999999998763 444444 4578888888643 34899999999999998754
Q ss_pred h------Hh----------HHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHHh-CChHHHHHH
Q 043116 103 S------EN----------TKVAI-DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-SRCRDFVLSQ-GALIPLLAE 163 (482)
Q Consensus 103 ~------~~----------~~~~~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~-~~i~~l~~~ 163 (482)
+ +. .+.++ ..+.|..++..+...|-.+|..++..|.++.... ++.++.+... -+|..++.+
T Consensus 95 d~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdl 174 (970)
T KOG0946|consen 95 DSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDL 174 (970)
T ss_pred cchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHH
Confidence 2 11 12233 4578899999999999999999999999988544 5567666554 468899999
Q ss_pred HcchhhhhHHHHHHHHHHHhhcCCCCCChhh-hhhHHHHHHHHhccC---C-hhHHHHHHHHHHHhccCCcHHHHHHHHh
Q 043116 164 LNEHAKLSMLRTATWTLSNFCRGKPQPPFNQ-IRPALRVLAQLIRSN---D-EKVLTDACRALAYLADGTNDKIQAVIEA 238 (482)
Q Consensus 164 l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~-~~~~~~~L~~ll~~~---~-~~~~~~~l~~L~~l~~~~~~~~~~~~~~ 238 (482)
+ .+..+.++..++..|..++++.+..+..+ +++++..|..++... | .-+...|+..|-|+..++..+...+.+.
T Consensus 175 L-~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~ 253 (970)
T KOG0946|consen 175 L-RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREG 253 (970)
T ss_pred H-hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcc
Confidence 9 67777888899999999999986665554 589999999999853 2 3578899999999999888888889999
Q ss_pred CcHHHHHHhhCC---CC-----hh-----hHHHHHHHHhHhhcCC-h-----hhHHHHHhcCchHHHHHHhcCC-CchhH
Q 043116 239 GVCPRLVKLLGH---RS-----RL-----VLTAALRTIGNIVTGD-D-----FQTQCIINCGALRYLLGLLIHN-HNKSI 298 (482)
Q Consensus 239 ~~l~~L~~ll~~---~~-----~~-----v~~~a~~~L~~l~~~~-~-----~~~~~l~~~~~i~~L~~ll~~~-~~~~v 298 (482)
+.+++|.++|.. .+ +. -...++.++..+..-. . ...+.+...+++..|..++.++ -..++
T Consensus 254 ~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dI 333 (970)
T KOG0946|consen 254 SYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADI 333 (970)
T ss_pred ccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhH
Confidence 999999988753 22 11 2344566666666421 1 2234566788999999988877 36689
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcC----------ChHHHHHHHh-cCChhHHHHHHHHHHHhhcC
Q 043116 299 KKEVCWIISNITAGNREQIQAVIDAG----------LIGPIVNLLQ-DAEFGTKKEAAWVISNATSG 354 (482)
Q Consensus 299 ~~~a~~~L~nl~~~~~~~~~~l~~~~----------~i~~L~~ll~-~~~~~~~~~a~~aL~~l~~~ 354 (482)
+.++.-++++.++++......+.+.. ++-.++.+.. ...+..|..+.+++..+...
T Consensus 334 ltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~d 400 (970)
T KOG0946|consen 334 LTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYD 400 (970)
T ss_pred HHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhc
Confidence 99999999999998777666666421 1112333333 34677888888888888764
No 54
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.08 E-value=1.3e-08 Score=94.26 Aligned_cols=227 Identities=14% Similarity=0.158 Sum_probs=161.8
Q ss_pred hHHHHHHHcch-hhhhHHHHHHHHHHHhhcCCCCCChhhhh-------hHHHHHHHHhccCChhHHHHHHHHHHHhccCC
Q 043116 157 LIPLLAELNEH-AKLSMLRTATWTLSNFCRGKPQPPFNQIR-------PALRVLAQLIRSNDEKVLTDACRALAYLADGT 228 (482)
Q Consensus 157 i~~l~~~l~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~-------~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~ 228 (482)
...++.++... .+.++.++++..+..+....+........ .....++.++..+|..+...++..+..+....
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 55666777666 78899999999999999988744433321 24566777888999999999999999999776
Q ss_pred cHHHHHHHHhCcHHHHHHhhCC----CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHh------cCCCchhH
Q 043116 229 NDKIQAVIEAGVCPRLVKLLGH----RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLL------IHNHNKSI 298 (482)
Q Consensus 229 ~~~~~~~~~~~~l~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll------~~~~~~~v 298 (482)
+....... .+.++.++.++.+ ++..++..++.++.++.. .+..+..+.+.++++.+..++ .+.....+
T Consensus 137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 54433222 3556666666654 455677899999999986 777778899999999999999 44447788
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-CChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCC
Q 043116 299 KKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQD-AEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP 377 (482)
Q Consensus 299 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~ 377 (482)
+.+++.++..++. +++....+.+.++++.|.++++. ....+.+-++.++.|++..........++..|+++.+..+..
T Consensus 215 ~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 9999999999976 46778888888899999999984 567899999999999998766658888888888777776665
Q ss_pred --CCCHHHHHH
Q 043116 378 --CPDPQIVTV 386 (482)
Q Consensus 378 --~~~~~v~~~ 386 (482)
.+|+++.+-
T Consensus 294 rk~~Dedl~ed 304 (312)
T PF03224_consen 294 RKWSDEDLTED 304 (312)
T ss_dssp S--SSHHHHHH
T ss_pred CCCCCHHHHHH
Confidence 467777654
No 55
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.06 E-value=1.4e-08 Score=93.89 Aligned_cols=227 Identities=16% Similarity=0.200 Sum_probs=158.2
Q ss_pred hHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHHHHHH------hCChHHHHHHHcchhhhhHHHHHHHHHHHhhcC
Q 043116 115 VPIFVKLLA--SPSDDVREQAVWALGNVAGDSSRCRDFVLS------QGALIPLLAELNEHAKLSMLRTATWTLSNFCRG 186 (482)
Q Consensus 115 i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~ 186 (482)
...++.+++ +.++.+....+..+..+..+.+...+.+.. .....++++++ ..+|..+...++.++..+...
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHc
Confidence 445555554 468889999999999999887766666555 23578888877 677899999999999999998
Q ss_pred CCCCChhhhhhHHHHHHHHhcc----CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhh-----CC--CChhh
Q 043116 187 KPQPPFNQIRPALRVLAQLIRS----NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLL-----GH--RSRLV 255 (482)
Q Consensus 187 ~~~~~~~~~~~~~~~L~~ll~~----~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-----~~--~~~~v 255 (482)
.+........+.++.+++.+.+ ++.+.+..++.+|.++... +.....+.+.++++.+..++ .+ ....+
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 8666655445666777666654 4566789999999999954 45667788899999999999 22 34578
Q ss_pred HHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHcCChHHHHHHHh
Q 043116 256 LTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNRE-QIQAVIDAGLIGPIVNLLQ 334 (482)
Q Consensus 256 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~ll~ 334 (482)
+..++.|++-++. +++....+.+.++++.+.++++.....++-+-+..++.|++...++ ....++..|+.+.+-.+..
T Consensus 215 ~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 8999999999987 6666777888889999999999887889999999999999985443 5667777666555554443
Q ss_pred --cCChhHHHHH
Q 043116 335 --DAEFGTKKEA 344 (482)
Q Consensus 335 --~~~~~~~~~a 344 (482)
-.|+++....
T Consensus 294 rk~~Dedl~edl 305 (312)
T PF03224_consen 294 RKWSDEDLTEDL 305 (312)
T ss_dssp S--SSHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 2566666543
No 56
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.03 E-value=9.2e-07 Score=80.39 Aligned_cols=322 Identities=14% Similarity=0.157 Sum_probs=210.2
Q ss_pred ChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHH------HhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcC
Q 043116 114 AVPIFVKLLASP-SDDVREQAVWALGNVAGDSSRCRDFVL------SQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG 186 (482)
Q Consensus 114 ~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~------~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~ 186 (482)
.+..++.+++.. .++....++..+.-+...++.....+. ..-.-...+.++ ...+.-+.....++++.++..
T Consensus 66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll-~r~d~~iv~~~~~Ils~la~~ 144 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLL-NRQDTFIVEMSFRILSKLACF 144 (442)
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHH-hcCChHHHHHHHHHHHHHHHh
Confidence 345556666532 234444455555544433332222111 112255677777 666677777799999999887
Q ss_pred CCCCChh-hhhhHHHHHHHHhcc-CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCC--CChhhHHHHHHH
Q 043116 187 KPQPPFN-QIRPALRVLAQLIRS-NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH--RSRLVLTAALRT 262 (482)
Q Consensus 187 ~~~~~~~-~~~~~~~~L~~ll~~-~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~ 262 (482)
.+..... ...-....+-..+++ .+++...-+++||..+...++.+ ..++...++..++..+.+ .+-.++...+.|
T Consensus 145 g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR-~~~v~adg~~~l~~~l~s~~~~~QlQYqsifc 223 (442)
T KOG2759|consen 145 GNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYR-YAFVIADGVSLLIRILASTKCGFQLQYQSIFC 223 (442)
T ss_pred ccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchh-heeeecCcchhhHHHHhccCcchhHHHHHHHH
Confidence 6433332 333445556666665 67888889999999999776644 445556666777777732 456789999999
Q ss_pred HhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH------HHHHHHHHcCChHHHHHHHh--
Q 043116 263 IGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNR------EQIQAVIDAGLIGPIVNLLQ-- 334 (482)
Q Consensus 263 L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~------~~~~~l~~~~~i~~L~~ll~-- 334 (482)
++-|.. ++...+.+...+.++.|.+++++....+|-+-++.++.|++...+ +....++..++.+.+-.+-.
T Consensus 224 iWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rk 302 (442)
T KOG2759|consen 224 IWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERK 302 (442)
T ss_pred HHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcC
Confidence 999887 565567677779999999999988788899999999999998543 33345556555554444433
Q ss_pred cCChhHHHHHHH-------HHHHhhcCC--------------C--------HHHHHHHHHc--CChHHHHhcCCCCC-HH
Q 043116 335 DAEFGTKKEAAW-------VISNATSGG--------------T--------HEQIKHLVRE--GCVKPLCDLLPCPD-PQ 382 (482)
Q Consensus 335 ~~~~~~~~~a~~-------aL~~l~~~~--------------~--------~~~~~~l~~~--~~l~~L~~ll~~~~-~~ 382 (482)
..|+++....-. -...++... + .+++..+.+. .++..|+.+|+.++ |.
T Consensus 303 ysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~ 382 (442)
T KOG2759|consen 303 YSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPI 382 (442)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCc
Confidence 234444332211 111222210 0 2334444444 35788888888654 66
Q ss_pred HHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043116 383 IVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWC 450 (482)
Q Consensus 383 v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 450 (482)
+...|+.-++.+.+.-+. .+..+...||-+.+-+|+++++++|+..|...++++..
T Consensus 383 iL~VAc~DIge~Vr~yP~------------gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 383 ILCVACHDIGEYVRHYPE------------GKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred eeehhhhhHHHHHHhCch------------HhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 777777777777766544 37888999999999999999999999999999888754
No 57
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=1.2e-07 Score=92.43 Aligned_cols=341 Identities=16% Similarity=0.158 Sum_probs=236.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHH
Q 043116 28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTK 107 (482)
Q Consensus 28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 107 (482)
.+|.++++....|-..+...-..+.+.+...+. ...+.+++++.=..+++ +.+|.-|++.++.+-- +....
T Consensus 50 lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~------~a~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v--~~i~e 120 (734)
T KOG1061|consen 50 LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPD------LAILAVNTFLKDCEDPN-PLIRALALRTMGCLRV--DKITE 120 (734)
T ss_pred hhHHHHhhcccCCchHHHHHHHHHHHhhccCch------HHHhhhhhhhccCCCCC-HHHHHHHhhceeeEee--hHHHH
Confidence 466777777777777777777777777776522 12346777787778888 8999988888877743 22222
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC
Q 043116 108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK 187 (482)
Q Consensus 108 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~ 187 (482)
-...++.+.+++.++.+|..+..+..++-..++ +.+.+.|+++.|-.++ .+.++.+..+|+.+|..+....
T Consensus 121 -----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 121 -----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred -----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHhC
Confidence 246889999999999999999999998875543 4577888999999998 5888999999999999999987
Q ss_pred CC-CChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHh
Q 043116 188 PQ-PPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266 (482)
Q Consensus 188 ~~-~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 266 (482)
+. .........+..++..+..-+.--+...+.++.+-...++.... .++..+...+.+.++.+...+...+.++
T Consensus 192 ~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~~ 266 (734)
T KOG1061|consen 192 PSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQL 266 (734)
T ss_pred CCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHHH
Confidence 64 34444466777777777766666777777777776655442222 3467888888898888888888888888
Q ss_pred hcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHH-------------------------HH
Q 043116 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQA-------------------------VI 321 (482)
Q Consensus 267 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~-------------------------l~ 321 (482)
......... .+-...-+.++.++.+. . +++..+..-+.-+....|+.... +.
T Consensus 267 ~~~~~~~~~-~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la 343 (734)
T KOG1061|consen 267 VKYLKQVNE-LLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELA 343 (734)
T ss_pred HHHHHHHHH-HHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHh
Confidence 765554322 33335666777777666 3 45544444443333333332110 11
Q ss_pred Hc----CChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHh
Q 043116 322 DA----GLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKV 397 (482)
Q Consensus 322 ~~----~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~ 397 (482)
.. .++..+...-..-|.+....+++|+++++..... .++++..|.++++-.-..++..+...+..+++.
T Consensus 344 ~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~-------~~~cv~~lLell~~~~~yvvqE~~vvi~dilRk 416 (734)
T KOG1061|consen 344 NDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQ-------SNDCVSILLELLETKVDYVVQEAIVVIRDILRK 416 (734)
T ss_pred hHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhh-------hhhhHHHHHHHHhhcccceeeehhHHHHhhhhc
Confidence 11 1233333333456888899999999999884322 167999999999977777777778888888887
Q ss_pred chhc
Q 043116 398 GEAE 401 (482)
Q Consensus 398 ~~~~ 401 (482)
.++.
T Consensus 417 yP~~ 420 (734)
T KOG1061|consen 417 YPNK 420 (734)
T ss_pred CCCc
Confidence 6654
No 58
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.01 E-value=2.9e-07 Score=86.35 Aligned_cols=359 Identities=12% Similarity=0.058 Sum_probs=218.3
Q ss_pred HHHHhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHH
Q 043116 32 MVAGVWSDD-NKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAI 110 (482)
Q Consensus 32 l~~~l~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 110 (482)
+++....+. ...+.+++.++.+++....++....+-+.-++......++.+.+..+|..|+.+|.+-+. ..+..+-
T Consensus 138 mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~---fv~~nf~ 214 (858)
T COG5215 138 MVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM---FVQGNFC 214 (858)
T ss_pred HHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH---HHHHhhc
Confidence 333334333 577889999999998775221222222222334444556666557899999999887332 1111111
Q ss_pred hC---C-ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcC
Q 043116 111 DH---G-AVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG 186 (482)
Q Consensus 111 ~~---g-~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~ 186 (482)
.. + ++...++.-+.++.+++..|..||..+-.-.-..-+..++.-......+.+ ++++.++...++...+.+|..
T Consensus 215 ~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m-ks~nd~va~qavEfWsticeE 293 (858)
T COG5215 215 YEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM-KSQNDEVAIQAVEFWSTICEE 293 (858)
T ss_pred chhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchHHHHHHHHHHHHHHHH
Confidence 11 1 235556677789999999999999988622211222333333333344444 677788888888888888875
Q ss_pred CCCCCh-----------------hhhhhHHHHHHHHhcc-------CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHH
Q 043116 187 KPQPPF-----------------NQIRPALRVLAQLIRS-------NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCP 242 (482)
Q Consensus 187 ~~~~~~-----------------~~~~~~~~~L~~ll~~-------~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~ 242 (482)
...... .....++|.++++|.. +++.+...+..||.-.++...+. +++. ++.
T Consensus 294 eid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~---i~~p-Vl~ 369 (858)
T COG5215 294 EIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK---IMRP-VLG 369 (858)
T ss_pred HhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhH---hHHH-HHH
Confidence 421111 1135689999999874 24667777777877666443322 2222 444
Q ss_pred HHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043116 243 RLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVID 322 (482)
Q Consensus 243 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 322 (482)
.+-.-++++++.-+..+.-+++.+..+.......-+-...+|.+...+.++ .-.++..++|+++.++.+-+..+ -.
T Consensus 370 FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad~va~~i---~p 445 (858)
T COG5215 370 FVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIADHVAMII---SP 445 (858)
T ss_pred HHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHHHHHHhc---Cc
Confidence 455567888999999999999999987655544444456888888888877 88899999999999975433221 12
Q ss_pred cCChHHHHH-HHh--cCChhHHHHHHHHHHHhhcCCCHHH--HHHHHHcCChHHHHhcCC-----CCCHHHHHHHHHHHH
Q 043116 323 AGLIGPIVN-LLQ--DAEFGTKKEAAWVISNATSGGTHEQ--IKHLVREGCVKPLCDLLP-----CPDPQIVTVCLIGLE 392 (482)
Q Consensus 323 ~~~i~~L~~-ll~--~~~~~~~~~a~~aL~~l~~~~~~~~--~~~l~~~~~l~~L~~ll~-----~~~~~v~~~~l~~L~ 392 (482)
.|-++..+. .+. .+++.+..++.|...|++.+-.+-. ...+.-.-....+-.+++ ..+...+.....+|.
T Consensus 446 ~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLg 525 (858)
T COG5215 446 CGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALG 525 (858)
T ss_pred cccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 232332222 222 3577888999999999986432111 011111111122222222 344467888899999
Q ss_pred HHHHhchhcc
Q 043116 393 NILKVGEAEK 402 (482)
Q Consensus 393 ~l~~~~~~~~ 402 (482)
.++.+++...
T Consensus 526 tli~~~~d~V 535 (858)
T COG5215 526 TLILICPDAV 535 (858)
T ss_pred HHHhhcchhH
Confidence 9998876643
No 59
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=9.6e-07 Score=86.31 Aligned_cols=251 Identities=14% Similarity=0.149 Sum_probs=149.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHH
Q 043116 29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKV 108 (482)
Q Consensus 29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 108 (482)
.|.+.++++..++.++.+|+.+...+.... ++.. +.+++....+|.+.+ .-|...++..+..+|..+++....
T Consensus 144 apeVe~Ll~~~~~~irKKA~Lca~r~irK~-P~l~-----e~f~~~~~~lL~ek~-hGVL~~~l~l~~e~c~~~~~~l~~ 216 (866)
T KOG1062|consen 144 APEVERLLQHRDPYIRKKAALCAVRFIRKV-PDLV-----EHFVIAFRKLLCEKH-HGVLIAGLHLITELCKISPDALSY 216 (866)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-chHH-----HHhhHHHHHHHhhcC-CceeeeHHHHHHHHHhcCHHHHHH
Confidence 444555555555556555555555555443 1111 123444455555555 455555555555555555554444
Q ss_pred HHhCCChHHHHHhhCC---------------CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcch-----h
Q 043116 109 AIDHGAVPIFVKLLAS---------------PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEH-----A 168 (482)
Q Consensus 109 ~~~~g~i~~L~~ll~~---------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-----~ 168 (482)
+.+ .++.|+..|+. ++|-++...++.|+-+-.+++...+.+-+ .|-+...+. .
T Consensus 217 fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN~ 289 (866)
T KOG1062|consen 217 FRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKNA 289 (866)
T ss_pred HHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcccccccc
Confidence 433 33444443321 34556666666666665555444333322 122222111 1
Q ss_pred hhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhh
Q 043116 169 KLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLL 248 (482)
Q Consensus 169 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll 248 (482)
...+...++.++..+-... ....-++..|-++|.+.|..++.-++..|......++...+.. -..++.+|
T Consensus 290 GnAILYE~V~TI~~I~~~~-----~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH-----r~tIleCL 359 (866)
T KOG1062|consen 290 GNAILYECVRTIMDIRSNS-----GLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH-----RSTILECL 359 (866)
T ss_pred hhHHHHHHHHHHHhccCCc-----hHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH-----HHHHHHHh
Confidence 2344555555555444332 1223456667778888888888888888888887666544322 25788999
Q ss_pred CCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 043116 249 GHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA 311 (482)
Q Consensus 249 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 311 (482)
++++..++..|+..+..|.. ....+ .++..|+.+|.+. ++++|...+.-+..++.
T Consensus 360 ~DpD~SIkrralELs~~lvn--~~Nv~-----~mv~eLl~fL~~~-d~~~k~~~as~I~~laE 414 (866)
T KOG1062|consen 360 KDPDVSIKRRALELSYALVN--ESNVR-----VMVKELLEFLESS-DEDFKADIASKIAELAE 414 (866)
T ss_pred cCCcHHHHHHHHHHHHHHhc--cccHH-----HHHHHHHHHHHhc-cHHHHHHHHHHHHHHHH
Confidence 99999999999999988875 33333 2456799999999 99999999999999987
No 60
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.92 E-value=1.2e-06 Score=82.29 Aligned_cols=362 Identities=17% Similarity=0.156 Sum_probs=217.6
Q ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH
Q 043116 29 LPTMVAGVWS--DDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT 106 (482)
Q Consensus 29 i~~l~~~l~s--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 106 (482)
+-.++..-.+ .+..+++.|+.+|.+-+..-+.-...+--.+-++...++.-+.++ .+++..|..||..+..-..++.
T Consensus 178 l~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d-~e~q~aafgCl~kim~LyY~fm 256 (858)
T COG5215 178 LFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGND-EELQHAAFGCLNKIMMLYYKFM 256 (858)
T ss_pred HHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444332 346788889999987333210000011111223444556666777 8999999999999988777777
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH----------------HHHhCChHHHHHHHcc-hh-
Q 043116 107 KVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDF----------------VLSQGALIPLLAELNE-HA- 168 (482)
Q Consensus 107 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~----------------~~~~~~i~~l~~~l~~-~~- 168 (482)
+..++.-........+++++.++...++...+.+|.+.-...-. -.-.+++|.++++|.+ ++
T Consensus 257 ~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed 336 (858)
T COG5215 257 QSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGED 336 (858)
T ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCC
Confidence 77777666677778899999999999999998888432111000 0012368889999854 22
Q ss_pred ----hhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHH
Q 043116 169 ----KLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRL 244 (482)
Q Consensus 169 ----~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L 244 (482)
+-.+-..|..||--.+... ...+...++..+-+-++++++.-++.+..+++.+..+..+....-+-...++.+
T Consensus 337 ~~~DdWn~smaA~sCLqlfaq~~---gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i 413 (858)
T COG5215 337 YYGDDWNPSMAASSCLQLFAQLK---GDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGI 413 (858)
T ss_pred ccccccchhhhHHHHHHHHHHHh---hhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHH
Confidence 1233334444444433321 122345566667777888999999999999999998766554444444678888
Q ss_pred HHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCc----hHH-HHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 043116 245 VKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGA----LRY-LLGLLIHNHNKSIKKEVCWIISNITAGNREQIQA 319 (482)
Q Consensus 245 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~----i~~-L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 319 (482)
...+.++.--++..++||++.++.+-+.... ..+- +.. ++.+.. .+.+-...+|...|++.+-++..+.
T Consensus 414 ~n~m~D~~l~vk~ttAwc~g~iad~va~~i~---p~~Hl~~~vsa~liGl~D---~p~~~~ncsw~~~nlv~h~a~a~~~ 487 (858)
T COG5215 414 ENEMSDSCLWVKSTTAWCFGAIADHVAMIIS---PCGHLVLEVSASLIGLMD---CPFRSINCSWRKENLVDHIAKAVRE 487 (858)
T ss_pred HHhcccceeehhhHHHHHHHHHHHHHHHhcC---ccccccHHHHHHHhhhhc---cchHHhhhHHHHHhHHHhhhhhhcc
Confidence 8888888888999999999999875443221 1222 222 223222 4577788999999998754433311
Q ss_pred ---HHH---cCChHHHHHHHh--cCChhHHHHHHHHHHHhhcCCCHHHHHHHHH---------cCChHHHHhcCCCCCH-
Q 043116 320 ---VID---AGLIGPIVNLLQ--DAEFGTKKEAAWVISNATSGGTHEQIKHLVR---------EGCVKPLCDLLPCPDP- 381 (482)
Q Consensus 320 ---l~~---~~~i~~L~~ll~--~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~---------~~~l~~L~~ll~~~~~- 381 (482)
++. ..++..|+..-. ..+...|..+..+|+.+...++......+.. ..++..+.+.+..+|.
T Consensus 488 ~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~ 567 (858)
T COG5215 488 VESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQL 567 (858)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 111 112333333322 3456788888999999887654333222111 0223333333333332
Q ss_pred ---HHHHHHHHHHHHHHHhchh
Q 043116 382 ---QIVTVCLIGLENILKVGEA 400 (482)
Q Consensus 382 ---~v~~~~l~~L~~l~~~~~~ 400 (482)
++..+.+..|..+++..+.
T Consensus 568 ~~~elqSN~~~vl~aiir~~~~ 589 (858)
T COG5215 568 LVEELQSNYIGVLEAIIRTRRR 589 (858)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 4666666666666654433
No 61
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=1.9e-06 Score=84.25 Aligned_cols=341 Identities=14% Similarity=0.139 Sum_probs=167.2
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH--
Q 043116 75 FVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVL-- 152 (482)
Q Consensus 75 L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-- 152 (482)
+.+=|++++ .-+.-.|+.+|++++. ++.... +.|-+-++++..++.+|..|+-|...+....|...+.+.
T Consensus 112 lknDL~s~n-q~vVglAL~alg~i~s--~Emard-----lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~ 183 (866)
T KOG1062|consen 112 LKNDLNSSN-QYVVGLALCALGNICS--PEMARD-----LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIA 183 (866)
T ss_pred HHhhccCCC-eeehHHHHHHhhccCC--HHHhHH-----hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHH
Confidence 344444555 4455555555555543 333332 234445555555555555555555555544443322211
Q ss_pred ------Hh--C----ChHHHHHHHcchhh-----hhHHHHHHHHHHHhhcCC--CCCChh-hhhhHHHH----HHHHhcc
Q 043116 153 ------SQ--G----ALIPLLAELNEHAK-----LSMLRTATWTLSNFCRGK--PQPPFN-QIRPALRV----LAQLIRS 208 (482)
Q Consensus 153 ------~~--~----~i~~l~~~l~~~~~-----~~~~~~a~~~L~~L~~~~--~~~~~~-~~~~~~~~----L~~ll~~ 208 (482)
+. | .+..+..++..+.+ .+.....+.+|.++.... +.-+.. +...+++. ++.+|..
T Consensus 184 ~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq 263 (866)
T KOG1062|consen 184 FRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQ 263 (866)
T ss_pred HHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcC
Confidence 11 1 12333333322111 123444555566666544 222111 11233332 3444556
Q ss_pred CChhHHHHHHHHHHHhccCCcHHH--HHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHH--------
Q 043116 209 NDEKVLTDACRALAYLADGTNDKI--QAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCII-------- 278 (482)
Q Consensus 209 ~~~~~~~~~l~~L~~l~~~~~~~~--~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~-------- 278 (482)
+|++........|..++.+.+... ...+-...+..++.+ .++...+..|+.+|+.+..+.+...+++.
T Consensus 264 ~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I--~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V 341 (866)
T KOG1062|consen 264 NDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDI--RSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVV 341 (866)
T ss_pred CCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhh
Confidence 666666666666766664322111 000111111222221 13334555555555555444333322221
Q ss_pred --hcCc----hHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhh
Q 043116 279 --NCGA----LRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNAT 352 (482)
Q Consensus 279 --~~~~----i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~ 352 (482)
+..+ =..+++.|+++ |..+|+.|...+-.+... .++.. ++..|+++|...+++.+..++.-+..++
T Consensus 342 ~~d~~avqrHr~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~~-----mv~eLl~fL~~~d~~~k~~~as~I~~la 413 (866)
T KOG1062|consen 342 QQDPTAVQRHRSTILECLKDP-DVSIKRRALELSYALVNE--SNVRV-----MVKELLEFLESSDEDFKADIASKIAELA 413 (866)
T ss_pred cCCcHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 0011 13477788888 888998888877777642 22332 5667888999889999999999999998
Q ss_pred cCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcC
Q 043116 353 SGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSH 432 (482)
Q Consensus 353 ~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~ 432 (482)
..-.|+...+ ++.+...++..-.-|...+...+..++..+..+... +....+...+.+.+ ++.-
T Consensus 414 EkfaP~k~W~------idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~---y~~~rLy~a~~~~~-------~~~i 477 (866)
T KOG1062|consen 414 EKFAPDKRWH------IDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHE---YAVLRLYLALSEDT-------LLDI 477 (866)
T ss_pred HhcCCcchhH------HHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhh---HHHHHHHHHHhhhh-------hhhh
Confidence 7666655444 555556665544444444444444444333111100 11111111111111 2334
Q ss_pred CCHHHHHHHHHHHHHhc
Q 043116 433 DNNDIHEMSVKILETYW 449 (482)
Q Consensus 433 ~~~~v~~~a~~~l~~~~ 449 (482)
+.+.+.+.|.|+|-.|-
T Consensus 478 s~e~l~qVa~W~IGEYG 494 (866)
T KOG1062|consen 478 SQEPLLQVASWCIGEYG 494 (866)
T ss_pred hhhhHHHHHHHHhhhhh
Confidence 45666888999998876
No 62
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.89 E-value=1.5e-07 Score=94.09 Aligned_cols=271 Identities=17% Similarity=0.193 Sum_probs=206.2
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHH
Q 043116 40 DNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFV 119 (482)
Q Consensus 40 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 119 (482)
-..-|+.|........+..+.++. -+|.+++.|-++- =|..|+..|+....-.+-....-+.-|++|..+
T Consensus 449 FFteQLTAFevWLd~gse~r~PPe-------QLPiVLQVLLSQv---HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVL 518 (1387)
T KOG1517|consen 449 FFTEQLTAFEVWLDYGSESRTPPE-------QLPIVLQVLLSQV---HRLRALVLLARFLDLGPWAVDLALSVGIFPYVL 518 (1387)
T ss_pred hHHHHHHHHHHHHHhccccCCChH-------hcchHHHHHHHHH---HHHHHHHHHHHHhccchhhhhhhhccchHHHHH
Confidence 346677788888777776644443 3677777765443 267788999999887888888888999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchh--hhhHHHHHHHHHHHhhcCCCCCChhhh-h
Q 043116 120 KLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHA--KLSMLRTATWTLSNFCRGKPQPPFNQI-R 196 (482)
Q Consensus 120 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~-~ 196 (482)
++|+++-.++|..-+.+...|..-++.++..+++.++-..+++.+..+. +++-+..++++|+.++.+-+..+.... .
T Consensus 519 KLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~ 598 (1387)
T KOG1517|consen 519 KLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNG 598 (1387)
T ss_pred HHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccc
Confidence 9999999999998888888888777889888888888888888884422 346677799999999998655444444 5
Q ss_pred hHHHHHHHHhccC-ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC----Ch
Q 043116 197 PALRVLAQLIRSN-DEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTG----DD 271 (482)
Q Consensus 197 ~~~~~L~~ll~~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~ 271 (482)
+++...+..++++ .+-.+..++-||+.|-++.++..=.-.+.+..+.|..+|+++-++||..|+.+|+.+... .+
T Consensus 599 ~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fd 678 (1387)
T KOG1517|consen 599 NLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFD 678 (1387)
T ss_pred cHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccc
Confidence 7788888888875 688899999999999987765544445567889999999999999999999999999875 22
Q ss_pred hhHHHH------------HhcCch---HHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 043116 272 FQTQCI------------INCGAL---RYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVI 321 (482)
Q Consensus 272 ~~~~~l------------~~~~~i---~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 321 (482)
+....+ ++..+. -.++.+++.+ .+-++.+.+-++..++.+.........
T Consensus 679 e~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va 742 (1387)
T KOG1517|consen 679 EQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVA 742 (1387)
T ss_pred hhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence 222211 222222 2567777888 899999999999999886555444333
No 63
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=1.8e-07 Score=87.67 Aligned_cols=323 Identities=15% Similarity=0.083 Sum_probs=203.9
Q ss_pred HhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 043116 67 IQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR 146 (482)
Q Consensus 67 ~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 146 (482)
...+++++++..+.+++ ..+|..|+..+.|++... ...-...-..+...+.++..+.+..++. +...+-.+..+-..
T Consensus 81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv~-k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKVA-KGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVT 157 (675)
T ss_pred HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHHh-ccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcc
Confidence 45678899999999999 799999999999998721 1111112224567778888877777765 33344333211100
Q ss_pred hHH-HHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 043116 147 CRD-FVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLA 225 (482)
Q Consensus 147 ~~~-~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~ 225 (482)
-+. .+.-.+++|.+-..+ ...++..+...+.-+..|-...+..-......+++-|..+|.++.++++..+=.++.++.
T Consensus 158 e~~~tFsL~~~ipLL~eri-y~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL 236 (675)
T KOG0212|consen 158 ESASTFSLPEFIPLLRERI-YVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFL 236 (675)
T ss_pred ccccccCHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 000 111112344444444 344666666666556555544332233344788999999999999999977777666554
Q ss_pred c---CCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHH
Q 043116 226 D---GTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEV 302 (482)
Q Consensus 226 ~---~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a 302 (482)
. .++.. +--...++.++..+.++++.++..|+.-|..+..-.+.. -...-+|++..++..+.+.+...++..+
T Consensus 237 ~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~e~~~i~~~a 312 (675)
T KOG0212|consen 237 AEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDTEEMSIKEYA 312 (675)
T ss_pred HHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCCccccHHHHH
Confidence 2 22221 111256788999999999999999988888877644433 2234457788888888877333344443
Q ss_pred HHHHHHHhc--CCHHHHHHHHH-cCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCC
Q 043116 303 CWIISNITA--GNREQIQAVID-AGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCP 379 (482)
Q Consensus 303 ~~~L~nl~~--~~~~~~~~l~~-~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~ 379 (482)
...-..+.. +.+...+. ++ ..+++.+.+.+.++..+.|..++.-+..+-.....+. ..-.......|..-++++
T Consensus 313 ~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql--~~h~~~if~tLL~tLsd~ 389 (675)
T KOG0212|consen 313 QMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQL--LVHNDSIFLTLLKTLSDR 389 (675)
T ss_pred HHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchh--hhhccHHHHHHHHhhcCc
Confidence 332222222 22221222 32 2367788888889999999999888888876533222 223446788899999999
Q ss_pred CHHHHHHHHHHHHHHHHhchh
Q 043116 380 DPQIVTVCLIGLENILKVGEA 400 (482)
Q Consensus 380 ~~~v~~~~l~~L~~l~~~~~~ 400 (482)
+.+|+..++..+..++.....
T Consensus 390 sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 390 SDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred hhHHHHHHHHHHHHHhcCccc
Confidence 999999999999999865433
No 64
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.89 E-value=3.3e-08 Score=93.25 Aligned_cols=266 Identities=17% Similarity=0.123 Sum_probs=171.7
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh--HHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCC-
Q 043116 114 AVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC--RDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQP- 190 (482)
Q Consensus 114 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~- 190 (482)
++..++..|++..+.+|..|+...+.++.--..| ...+...|. .|..-+ ....+++.-..+.++..+.......
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhcccc
Confidence 5677888999999999999999988886211111 111222221 233334 4556777777777776666543222
Q ss_pred ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC
Q 043116 191 PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGD 270 (482)
Q Consensus 191 ~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 270 (482)
-..-..+++|.+..+|++....+..+.+..++.++...++....--=..+.--|+..|.+.+.++|.+|..+++.++..-
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai 761 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI 761 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence 11234799999999999999999999999999999877754321111123345777888889999999999999888633
Q ss_pred hhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHH
Q 043116 271 DFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISN 350 (482)
Q Consensus 271 ~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~ 350 (482)
..+ .++..|+.-|+.. +...|.-...+++-.+.. .....++|.|+.=...++..++.-++.+++.
T Consensus 762 GPq-------dvL~~LlnnLkvq-eRq~RvctsvaI~iVae~-------cgpfsVlP~lm~dY~TPe~nVQnGvLkam~f 826 (975)
T COG5181 762 GPQ-------DVLDILLNNLKVQ-ERQQRVCTSVAISIVAEY-------CGPFSVLPTLMSDYETPEANVQNGVLKAMCF 826 (975)
T ss_pred CHH-------HHHHHHHhcchHH-HHHhhhhhhhhhhhhHhh-------cCchhhHHHHHhcccCchhHHHHhHHHHHHH
Confidence 322 3445566666554 333333333333333221 1112367777766667788899999999998
Q ss_pred hhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhch
Q 043116 351 ATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGE 399 (482)
Q Consensus 351 l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~ 399 (482)
+..........++.. ..+.|.+.+.+.|+--+..+...+..+.-.+.
T Consensus 827 mFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 827 MFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred HHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 877544444445444 67778888888888777777777777664433
No 65
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=3.9e-05 Score=67.66 Aligned_cols=367 Identities=14% Similarity=0.142 Sum_probs=240.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCc---HHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh
Q 043116 29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSP---IEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN 105 (482)
Q Consensus 29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~ 105 (482)
.|.|-..|..++..++..++..+..+....+... +..+++.|+++.++..+-.++ .++...|...+..++. .+..
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpaa 161 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPAA 161 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHHH
Confidence 4445555667888899989888888877642112 344458999999999999999 8999999999999988 7777
Q ss_pred HHHHHhCCChHHHH--HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116 106 TKVAIDHGAVPIFV--KLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF 183 (482)
Q Consensus 106 ~~~~~~~g~i~~L~--~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L 183 (482)
...+++......+- .+-..-+.-+|......+..+..-++.....+..+|.+..|..-+....|.-++.++......|
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL 241 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL 241 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence 78888877765442 2333345667777888888898888888888899999999999996667888888888888888
Q ss_pred hcCCCCCChhhhhhHHHHHHHHhcc--CChhHHHHHHHHHHHhccCCc---HHHHHHHHh--CcHHHHHHhhCCCChhhH
Q 043116 184 CRGKPQPPFNQIRPALRVLAQLIRS--NDEKVLTDACRALAYLADGTN---DKIQAVIEA--GVCPRLVKLLGHRSRLVL 256 (482)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~~~~~~l~~L~~l~~~~~---~~~~~~~~~--~~l~~L~~ll~~~~~~v~ 256 (482)
........+..-.++++.+..++.. .+|--.-.++...+.+..... -.-+.+++. -+++....++...++..+
T Consensus 242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai 321 (524)
T KOG4413|consen 242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI 321 (524)
T ss_pred HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence 8776666666678999999999874 344334334444443332110 001112221 234455566677888999
Q ss_pred HHHHHHHhHhhcCChhhHHHHHhcCc--hHHHHHHhcCCCchhHHHHHHHHHHHHhc---CCHHHH---------HHHH-
Q 043116 257 TAALRTIGNIVTGDDFQTQCIINCGA--LRYLLGLLIHNHNKSIKKEVCWIISNITA---GNREQI---------QAVI- 321 (482)
Q Consensus 257 ~~a~~~L~~l~~~~~~~~~~l~~~~~--i~~L~~ll~~~~~~~v~~~a~~~L~nl~~---~~~~~~---------~~l~- 321 (482)
..|+.+++.+....+. .+.+...|- .+.++.-.-+.....-+..+..+|.+++. -.++++ ..++
T Consensus 322 eaAiDalGilGSnteG-adlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclif 400 (524)
T KOG4413|consen 322 EAAIDALGILGSNTEG-ADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIF 400 (524)
T ss_pred HHHHHHHHhccCCcch-hHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHH
Confidence 9999999988764433 344444432 23333222222122344566777888775 122221 1111
Q ss_pred H-------cCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHH-HcCChHHHHhcCCCCC---HHHHHHHHHH
Q 043116 322 D-------AGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLV-REGCVKPLCDLLPCPD---PQIVTVCLIG 390 (482)
Q Consensus 322 ~-------~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~-~~~~l~~L~~ll~~~~---~~v~~~~l~~ 390 (482)
+ -.-...+..+++.+.++++..+...+..++. .|-..+.+. ..++++...+.-...+ .+.+..++++
T Consensus 401 daaaqstkldPleLFlgilqQpfpEihcAalktfTAiaa--qPWalkeifakeefieiVtDastEhaKaakdAkYeccKA 478 (524)
T KOG4413|consen 401 DAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA--QPWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKA 478 (524)
T ss_pred HHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc--CcHHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHH
Confidence 1 1235556667777889999999999999987 444444433 4576666665443322 2456667777
Q ss_pred HHHHHHhchh
Q 043116 391 LENILKVGEA 400 (482)
Q Consensus 391 L~~l~~~~~~ 400 (482)
+.+-+...+.
T Consensus 479 iaeaflcaef 488 (524)
T KOG4413|consen 479 IAEAFLCAEF 488 (524)
T ss_pred HHHHHHHHHH
Confidence 7766654333
No 66
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=3.9e-08 Score=91.40 Aligned_cols=306 Identities=14% Similarity=0.093 Sum_probs=198.6
Q ss_pred HHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC-CCCChhhhhhHHHHHHHHhccCC
Q 043116 132 QAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLIRSND 210 (482)
Q Consensus 132 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~ll~~~~ 210 (482)
+++.+|..+++.....|.-+.+..+.+.|++.| ++++..+..-+...++|+.-.- +-.......+++..++.++.+.|
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD 486 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD 486 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence 444555666655555677777888899999999 5565555566777777777654 33444455799999999999999
Q ss_pred hhHHHHHHHHHHHhccCCcHHHH-HHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChh---hHHHHHhc----Cc
Q 043116 211 EKVLTDACRALAYLADGTNDKIQ-AVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDF---QTQCIINC----GA 282 (482)
Q Consensus 211 ~~~~~~~l~~L~~l~~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~---~~~~l~~~----~~ 282 (482)
...+....|.++.+..+.++..+ .....-.+..++.+..++...++..++.++.|+.++... ....+++. -+
T Consensus 487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl 566 (743)
T COG5369 487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL 566 (743)
T ss_pred hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence 99999999999999866553322 244445678999999999999999999999999884332 22222221 24
Q ss_pred hHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH-HcCChHHHHHHHhcC-----------ChhHHHHHHHHHHH
Q 043116 283 LRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVI-DAGLIGPIVNLLQDA-----------EFGTKKEAAWVISN 350 (482)
Q Consensus 283 i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~-----------~~~~~~~a~~aL~~ 350 (482)
.+.+++.++.. +|-.-...++.|.+++..+.+..+.+. +..++..+..++... ...+-........+
T Consensus 567 fk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~ 645 (743)
T COG5369 567 FKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVN 645 (743)
T ss_pred HHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeec
Confidence 56778888888 777777889999999986555444444 345666666665421 11122222223333
Q ss_pred hhcCCCHHHHHHHHHcCCh--HHHHhc---CCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHH
Q 043116 351 ATSGGTHEQIKHLVREGCV--KPLCDL---LPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEK 425 (482)
Q Consensus 351 l~~~~~~~~~~~l~~~~~l--~~L~~l---l~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 425 (482)
+..+++. . +.+.. +.+-.+ -..++.++.....|...++....+..+.. +.....++.+.+.|.-+.
T Consensus 646 l~e~~d~-f-----~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vt---ratveR~~iL~~~G~~e~ 716 (743)
T COG5369 646 LSENSDK-F-----KRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVT---RATVERIQILCANGIREW 716 (743)
T ss_pred ccccccc-c-----ccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccc---hhhHHHHHHHHHccHHHH
Confidence 3332111 1 11111 122111 12344456666667666655443332211 223346778889999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHh
Q 043116 426 IENLQSHDNNDIHEMSVKILETY 448 (482)
Q Consensus 426 l~~l~~~~~~~v~~~a~~~l~~~ 448 (482)
++.++.++++.|++++-.+++.+
T Consensus 717 l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 717 LVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred HHHHhccCcHHHHHHHHHHHHhh
Confidence 99999999999999999988754
No 67
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=3.1e-06 Score=82.57 Aligned_cols=217 Identities=18% Similarity=0.183 Sum_probs=120.3
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 043116 72 VPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151 (482)
Q Consensus 72 ~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 151 (482)
+.++.+-|++++ +.+|..|+++|..|-- + ++.-=++-++-++..+..+.+|..|+.+|-.+-.-+++.+..+
T Consensus 110 IntfQk~L~DpN-~LiRasALRvlSsIRv--p-----~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL 181 (968)
T KOG1060|consen 110 INTFQKALKDPN-QLIRASALRVLSSIRV--P-----MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL 181 (968)
T ss_pred HHHHHhhhcCCc-HHHHHHHHHHHHhcch--h-----hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH
Confidence 455556666666 6666666666655532 1 1100112333445556667777777777776665544443322
Q ss_pred HHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccC---C
Q 043116 152 LSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADG---T 228 (482)
Q Consensus 152 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~---~ 228 (482)
. .++..|..+.++-+.-.|+.++-.+|-+. ...+.+-...++.++.+-+.--+..++..|..-+.+ +
T Consensus 182 ~------e~I~~LLaD~splVvgsAv~AF~evCPer----ldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~ 251 (968)
T KOG1060|consen 182 E------EVIKKLLADRSPLVVGSAVMAFEEVCPER----LDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPD 251 (968)
T ss_pred H------HHHHHHhcCCCCcchhHHHHHHHHhchhH----HHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCC
Confidence 2 23333336666777777777777777542 334455566677776655544455555555544421 0
Q ss_pred cHHH----------------------HHHHHh---CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCch
Q 043116 229 NDKI----------------------QAVIEA---GVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGAL 283 (482)
Q Consensus 229 ~~~~----------------------~~~~~~---~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i 283 (482)
+... ....+. -+++..-.++.+.++.+...++++...++-.+.. .+++
T Consensus 252 P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~-------~~i~ 324 (968)
T KOG1060|consen 252 PTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQV-------TKIA 324 (968)
T ss_pred ccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHH-------HHHH
Confidence 0000 000000 1234444567778889999999999998853321 2467
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH
Q 043116 284 RYLLGLLIHNHNKSIKKEVCWIISNITAGNRE 315 (482)
Q Consensus 284 ~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~ 315 (482)
+.|+.+|++. ..+|......+..++...+.
T Consensus 325 kaLvrLLrs~--~~vqyvvL~nIa~~s~~~~~ 354 (968)
T KOG1060|consen 325 KALVRLLRSN--REVQYVVLQNIATISIKRPT 354 (968)
T ss_pred HHHHHHHhcC--CcchhhhHHHHHHHHhcchh
Confidence 7888888765 45676666666666654444
No 68
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.85 E-value=4.8e-06 Score=80.76 Aligned_cols=389 Identities=13% Similarity=0.123 Sum_probs=233.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC-------CChHHHHHHHHHHHHHhC
Q 043116 28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMRE-------DYPQLQFEAARALTNIAS 100 (482)
Q Consensus 28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~-------~~~~v~~~a~~~L~~l~~ 100 (482)
.+-.+++-.+++|.+.+.-.+..+..++...+- ....+..+++|.+....... ++..+...+..+-..+
T Consensus 637 vmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv--~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~Kv-- 712 (1172)
T KOG0213|consen 637 VMLILIREFGSPDEEMKKIVLKVVKQCCATDGV--EPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKV-- 712 (1172)
T ss_pred HHHHHHHhhCCChHHHHHHHHHHHHHHhcccCC--CHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHh--
Confidence 356677778899999999999999999887532 33445666777776654322 2222222222222222
Q ss_pred CChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh--hhHHHHHHhCChHHHHHHHcc-hhhhhHHHHHH
Q 043116 101 GTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSS--RCRDFVLSQGALIPLLAELNE-HAKLSMLRTAT 177 (482)
Q Consensus 101 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~a~ 177 (482)
.....+..++.-++++++..|..++.++..+...-+ ..-..+ +...+..++..+.. +.+..+.-...
T Consensus 713 ---------G~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderl-eE~lidgil~Afqeqtt~d~vml~gf 782 (1172)
T KOG0213|consen 713 ---------GSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERL-EERLIDGILYAFQEQTTEDSVMLLGF 782 (1172)
T ss_pred ---------CchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHH-HHHHHHHHHHHHHhcccchhhhhhhH
Confidence 122345666666778888888877777776653221 111111 22234555555532 22333444444
Q ss_pred HHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHH--HHHHHHhCcHHHHHHhhCCCChhh
Q 043116 178 WTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDK--IQAVIEAGVCPRLVKLLGHRSRLV 255 (482)
Q Consensus 178 ~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~--~~~~~~~~~l~~L~~ll~~~~~~v 255 (482)
.+..+-... ........++..++..|++..+.++..++..++.++..-... .+.+...| -.|...|....+++
T Consensus 783 g~V~~~lg~---r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEv 857 (1172)
T KOG0213|consen 783 GTVVNALGG---RVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEV 857 (1172)
T ss_pred HHHHHHHhh---ccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHH
Confidence 444443322 223344667778888999999999999999999887321111 11122223 35677788888888
Q ss_pred HHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHH--HHHHHcCChHHHHHHH
Q 043116 256 LTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQI--QAVIDAGLIGPIVNLL 333 (482)
Q Consensus 256 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~--~~l~~~~~i~~L~~ll 333 (482)
.-..+.+|..+.....-....---.+++|.|..+|++. +.+|+..+...++.++...++.+ +..+. +--.|+++|
T Consensus 858 LgsILgAikaI~nvigm~km~pPi~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWMR--IcfeLlelL 934 (1172)
T KOG0213|consen 858 LGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWMR--ICFELLELL 934 (1172)
T ss_pred HHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHHH
Confidence 88777777666542211000001137899999999999 99999999999999997545532 12222 344577888
Q ss_pred hcCChhHHHHHHHHHHHhhcCCCHHH-HHHHH----------------------H-c---CChHHHHhcCCCCCHHHHHH
Q 043116 334 QDAEFGTKKEAAWVISNATSGGTHEQ-IKHLV----------------------R-E---GCVKPLCDLLPCPDPQIVTV 386 (482)
Q Consensus 334 ~~~~~~~~~~a~~aL~~l~~~~~~~~-~~~l~----------------------~-~---~~l~~L~~ll~~~~~~v~~~ 386 (482)
.+.+.+++.+|...++.++..-.|.. ...+. + . .+++.|+.--..++-.|+.-
T Consensus 935 kahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnG 1014 (1172)
T KOG0213|consen 935 KAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNG 1014 (1172)
T ss_pred HHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHh
Confidence 88889999999999998876432222 11111 1 1 23555555555677788988
Q ss_pred HHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043116 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCG 451 (482)
Q Consensus 387 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 451 (482)
+++++.-+|++.....+ .|.-.+ ...|.+-+.+.+..=++.|..++.++.-+
T Consensus 1015 VLkalsf~Feyigemsk--------dYiyav-----~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1015 VLKALSFMFEYIGEMSK--------DYIYAV-----TPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred HHHHHHHHHHHHHHHhh--------hHHHHh-----hHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence 99999999887555322 122222 34555556666665566777777665443
No 69
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=7.7e-06 Score=78.33 Aligned_cols=343 Identities=15% Similarity=0.113 Sum_probs=222.0
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 043116 71 VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDF 150 (482)
Q Consensus 71 ~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 150 (482)
++..++.-+..+. +.+|.....|+..+........ ...+.+-+.+++......-+..+.+.++.+..+.. -..
T Consensus 97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~----~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~ 169 (569)
T KOG1242|consen 97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLS----GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IES 169 (569)
T ss_pred HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccC----HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhh
Confidence 4566777777788 8999988888887754211111 11245677788888888888889999999986653 345
Q ss_pred HHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcH
Q 043116 151 VLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTND 230 (482)
Q Consensus 151 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~ 230 (482)
+.+.+++..+...+.+......++.+..+....+..-........-..+|.++..+.+..+.++..+..+...+...-+.
T Consensus 170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~ 249 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA 249 (569)
T ss_pred hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence 56677888888888544443333334444433333322223334456677777777778888998888877766543221
Q ss_pred -HHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHH
Q 043116 231 -KIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNI 309 (482)
Q Consensus 231 -~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl 309 (482)
... -+++.++.-+....+..+..++..++.++...+.+.. ..-..++|.+.+.|-+. ++++|+.+..++..+
T Consensus 250 ~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 250 YAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKF 322 (569)
T ss_pred chhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 111 2344444444444778889999999999886666544 45568999999999999 999999999999999
Q ss_pred hc--CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCC--CHHHHHHHHHcCChHHHHhcCCCCCHHHHH
Q 043116 310 TA--GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGG--THEQIKHLVREGCVKPLCDLLPCPDPQIVT 385 (482)
Q Consensus 310 ~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~ 385 (482)
+. .+++ ++ .++|.|++.+.++...+. .+...|+.-.... ++..... .++.|..-+...+..+.+
T Consensus 323 ~svidN~d-I~-----~~ip~Lld~l~dp~~~~~-e~~~~L~~ttFV~~V~~psLal-----mvpiL~R~l~eRst~~kr 390 (569)
T KOG1242|consen 323 GSVIDNPD-IQ-----KIIPTLLDALADPSCYTP-ECLDSLGATTFVAEVDAPSLAL-----MVPILKRGLAERSTSIKR 390 (569)
T ss_pred HHhhccHH-HH-----HHHHHHHHHhcCcccchH-HHHHhhcceeeeeeecchhHHH-----HHHHHHHHHhhccchhhh
Confidence 87 3444 33 267788888876543332 2333333221110 1111111 355555566677778889
Q ss_pred HHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043116 386 VCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWC 450 (482)
Q Consensus 386 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 450 (482)
.+..++.|++...+..+. ..+|...+ ++.+.....+..|+++..+.+.+.....
T Consensus 391 ~t~~IidNm~~LveDp~~------lapfl~~L-----lp~lk~~~~d~~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 391 KTAIIIDNMCKLVEDPKD------LAPFLPSL-----LPGLKENLDDAVPEVRAVAARALGALLE 444 (569)
T ss_pred hHHHHHHHHHHhhcCHHH------HhhhHHHH-----hhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 999999999887644321 23344444 6777888888899999888888844433
No 70
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=4.2e-06 Score=84.04 Aligned_cols=308 Identities=13% Similarity=0.194 Sum_probs=211.7
Q ss_pred hhhhhhhccHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 043116 20 LNLQSKFEILPTMVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNI 98 (482)
Q Consensus 20 ~~~~~~~~~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l 98 (482)
.+.++.++.++.++..+. ..++.++..|+..+..+... .++...+.+.|.+..|+.+|.+. |..|..++.+|..+
T Consensus 1764 gSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL 1839 (2235)
T KOG1789|consen 1764 GSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYAL 1839 (2235)
T ss_pred cchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHH
Confidence 455777888899999988 56789999999999887765 78899999999999999999776 57899999999999
Q ss_pred hCCChHhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCC---hhhHHHHHH----------hCChHHHHHHH
Q 043116 99 ASGTSENTKVAIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDS---SRCRDFVLS----------QGALIPLLAEL 164 (482)
Q Consensus 99 ~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~----------~~~i~~l~~~l 164 (482)
++ +++......+.|++..+..++- +..+..|.++...++.+..+. |..+-.++. .+.-...+..+
T Consensus 1840 ~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~f 1918 (2235)
T KOG1789|consen 1840 SS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMF 1918 (2235)
T ss_pred hc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHH
Confidence 88 8888888889999888887655 566888999999999997443 221111111 01123333333
Q ss_pred cchh-hh------hHHHHHHHHHHHhhc----CC---CC--------------------------------------CCh
Q 043116 165 NEHA-KL------SMLRTATWTLSNFCR----GK---PQ--------------------------------------PPF 192 (482)
Q Consensus 165 ~~~~-~~------~~~~~a~~~L~~L~~----~~---~~--------------------------------------~~~ 192 (482)
.... ++ ..+......+..+.. .. +. ...
T Consensus 1919 E~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk 1998 (2235)
T KOG1789|consen 1919 ESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPK 1998 (2235)
T ss_pred hccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHH
Confidence 2211 11 122222222222221 00 11 111
Q ss_pred hhhhhHHHHHHHHhccCChh--HHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC
Q 043116 193 NQIRPALRVLAQLIRSNDEK--VLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGD 270 (482)
Q Consensus 193 ~~~~~~~~~L~~ll~~~~~~--~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 270 (482)
....+++..+.+++..++++ .....-.++..+....+...+.+-..|.++.++..+...+..+-..|++.|..++. +
T Consensus 1999 ~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lse-n 2077 (2235)
T KOG1789|consen 1999 LFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSE-N 2077 (2235)
T ss_pred HHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhh-c
Confidence 22356777777777755433 33333444555555666666666667999999999988887788999999999987 5
Q ss_pred hhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhc
Q 043116 271 DFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA-GNREQIQAVIDAGLIGPIVNLLQD 335 (482)
Q Consensus 271 ~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~ 335 (482)
....+.+.....+..++..+... +....-|+.+|..+.. ...+.....++.|.+|.|+++|+.
T Consensus 2078 ~~C~~AMA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2078 QFCCDAMAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred cHHHHHHhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhcc
Confidence 55556666666677788777665 3344578888888876 455666778889999999999984
No 71
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=8.4e-07 Score=86.68 Aligned_cols=365 Identities=16% Similarity=0.174 Sum_probs=199.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHH
Q 043116 29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKV 108 (482)
Q Consensus 29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 108 (482)
...+.++++.+++.++..++....++-..+ .+.....|+++.|-.++.+++ |.+...|+.+|..+...+++.-..
T Consensus 123 ~~Pl~~~l~d~~~yvRktaa~~vakl~~~~----~~~~~~~gl~~~L~~ll~D~~-p~VVAnAlaaL~eI~e~~~~~~~~ 197 (734)
T KOG1061|consen 123 CDPLLKCLKDDDPYVRKTAAVCVAKLFDID----PDLVEDSGLVDALKDLLSDSN-PMVVANALAALSEIHESHPSVNLL 197 (734)
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHhhcCC----hhhccccchhHHHHHHhcCCC-chHHHHHHHHHHHHHHhCCCCCcc
Confidence 566778888999999999998888886553 566778999999999999888 999999999999998755431111
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCC
Q 043116 109 AIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP 188 (482)
Q Consensus 109 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~ 188 (482)
.+....+..++..+..-++=-+...+.++.+..-.++ ++.. .++..+...+ .+.+..+.-.+..++.++....+
T Consensus 198 ~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~--~ea~---~i~~r~~p~L-qh~n~avvlsavKv~l~~~~~~~ 271 (734)
T KOG1061|consen 198 ELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS--REAE---DICERLTPRL-QHANSAVVLSAVKVILQLVKYLK 271 (734)
T ss_pred cccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc--hhHH---HHHHHhhhhh-ccCCcceEeehHHHHHHHHHHHH
Confidence 1111122233333322222222222223333221111 0100 0111222222 22222222223333333222221
Q ss_pred CCChhhhhhHHHHHHHHhccCChhHHHH------------------------------------HHHHHHHhccCCcHHH
Q 043116 189 QPPFNQIRPALRVLAQLIRSNDEKVLTD------------------------------------ACRALAYLADGTNDKI 232 (482)
Q Consensus 189 ~~~~~~~~~~~~~L~~ll~~~~~~~~~~------------------------------------~l~~L~~l~~~~~~~~ 232 (482)
.........+-+.++.++.+.. +++.- =+.++..++.. +..
T Consensus 272 ~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~--~nl 348 (734)
T KOG1061|consen 272 QVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELAND--ANL 348 (734)
T ss_pred HHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhH--hHH
Confidence 1111111222222222222222 23322 33333333311 111
Q ss_pred HHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 043116 233 QAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAG 312 (482)
Q Consensus 233 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 312 (482)
. .++.-+...-..-+.+....+++++++++..-++. .+.++.++.+++.. -..+..+++..+..+.+.
T Consensus 349 ~-----qvl~El~eYatevD~~fvrkaIraig~~aik~e~~------~~cv~~lLell~~~-~~yvvqE~~vvi~dilRk 416 (734)
T KOG1061|consen 349 A-----QVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS------NDCVSILLELLETK-VDYVVQEAIVVIRDILRK 416 (734)
T ss_pred H-----HHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh------hhhHHHHHHHHhhc-ccceeeehhHHHHhhhhc
Confidence 1 12333444444567788899999999998744432 57889999999977 445677888888888875
Q ss_pred CHHHHHHHHHcCChHHHHHHHhc-CChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHH
Q 043116 313 NREQIQAVIDAGLIGPIVNLLQD-AEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGL 391 (482)
Q Consensus 313 ~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L 391 (482)
.|..... +++.+...+.+ ++|+.|..-+|.++.-+..- +.... .++.+.+-..++...|+...+.+.
T Consensus 417 yP~~~~~-----vv~~l~~~~~sl~epeak~amiWilg~y~~~i--~~a~e-----lL~~f~en~~dE~~~Vql~LLta~ 484 (734)
T KOG1061|consen 417 YPNKYES-----VVAILCENLDSLQEPEAKAALIWILGEYAERI--ENALE-----LLESFLENFKDETAEVQLELLTAA 484 (734)
T ss_pred CCCchhh-----hhhhhcccccccCChHHHHHHHHHHhhhhhcc--CcHHH-----HHHHHHhhcccchHHHHHHHHHHH
Confidence 5553322 33444444443 57889999999999887632 22222 455666666677778888888777
Q ss_pred HHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHh--hcCCCHHHHHHHHHHHHHh
Q 043116 392 ENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENL--QSHDNNDIHEMSVKILETY 448 (482)
Q Consensus 392 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l--~~~~~~~v~~~a~~~l~~~ 448 (482)
.++|-..+... .+++ +.+..+ +++++++++.++.....-+
T Consensus 485 ik~Fl~~p~~t-----------q~~l------~~vL~~~~~d~~~~dlrDr~l~Y~RlL 526 (734)
T KOG1061|consen 485 IKLFLKKPTET-----------QELL------QGVLPLATADTDNPDLRDRGLIYWRLL 526 (734)
T ss_pred HHHHhcCCccH-----------HHHH------HHHHhhhhccccChhhhhhHHHHHHHh
Confidence 77765444321 1111 222222 5677889998887655433
No 72
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=2.9e-05 Score=78.35 Aligned_cols=329 Identities=15% Similarity=0.164 Sum_probs=222.4
Q ss_pred HHHHHHHHHHHHhcCCCCCcH----HHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHH
Q 043116 43 VQLEATTLFRKMLSFDRNSPI----EKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIF 118 (482)
Q Consensus 43 ~~~~a~~~L~~l~~~~~~~~~----~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 118 (482)
-...++.+|.|+.+.+ ++.. .+..--|.++.+..++.....+.++..|+.++..+.. +.++...+...|.+..|
T Consensus 1741 ~v~m~LtAL~Nli~~n-PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSAN-PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTL 1818 (2235)
T ss_pred HHHHHHHHHHHHHhhC-cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHH
Confidence 4457899999999886 3221 2223357788888888766658999999999988876 78888999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC---CCCChhhh
Q 043116 119 VKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK---PQPPFNQI 195 (482)
Q Consensus 119 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~---~~~~~~~~ 195 (482)
+.+|.+ -|..|+.++.+|..++.. +.......+.|++..+..++-.+...+.+..++..+..+..+. |......+
T Consensus 1819 L~lLHS-~PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~ 1896 (2235)
T KOG1789|consen 1819 LTLLHS-QPSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLI 1896 (2235)
T ss_pred HHHHhc-ChHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehH
Confidence 999985 467899999999999855 4455666788999999988877778888999999999999876 33333322
Q ss_pred hhHH-----------HHHHHHhcc--CChh------HHHHHHHHHHHhcc--------CC------cHH-----------
Q 043116 196 RPAL-----------RVLAQLIRS--NDEK------VLTDACRALAYLAD--------GT------NDK----------- 231 (482)
Q Consensus 196 ~~~~-----------~~L~~ll~~--~~~~------~~~~~l~~L~~l~~--------~~------~~~----------- 231 (482)
..+- ...++++.. ++|+ .+...-..+..+.. ++ +++
T Consensus 1897 kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~ 1976 (2235)
T KOG1789|consen 1897 KFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKEC 1976 (2235)
T ss_pred HhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCc
Confidence 2222 223334331 2222 22222223332221 00 000
Q ss_pred -------HHHHH------------HhCcHHHHHHhhCCCChh--hHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHh
Q 043116 232 -------IQAVI------------EAGVCPRLVKLLGHRSRL--VLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLL 290 (482)
Q Consensus 232 -------~~~~~------------~~~~l~~L~~ll~~~~~~--v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll 290 (482)
...+. -.+.++.+..+|..++++ ....-..++..+.+..+.....+-..|.+|.++..+
T Consensus 1977 aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am 2056 (2235)
T KOG1789|consen 1977 AVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAM 2056 (2235)
T ss_pred ccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHH
Confidence 00011 123455666666544332 222223334445556677667677779999999999
Q ss_pred cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChH
Q 043116 291 IHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVK 370 (482)
Q Consensus 291 ~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~ 370 (482)
.+. +..+-+.|...|..++. +.-....+.....+..++..+... +...--|+.+|..+......+........|.++
T Consensus 2057 ~~~-n~s~P~SaiRVlH~Lse-n~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvp 2133 (2235)
T KOG1789|consen 2057 CLQ-NTSAPRSAIRVLHELSE-NQFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVP 2133 (2235)
T ss_pred Hhc-CCcCcHHHHHHHHHHhh-ccHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHH
Confidence 887 66677889999999976 345556666666777777777643 445557899999998876667777778889999
Q ss_pred HHHhcCCC
Q 043116 371 PLCDLLPC 378 (482)
Q Consensus 371 ~L~~ll~~ 378 (482)
.|+++++.
T Consensus 2134 yLL~LLd~ 2141 (2235)
T KOG1789|consen 2134 YLLQLLDS 2141 (2235)
T ss_pred HHHHHhcc
Confidence 99999974
No 73
>PF05536 Neurochondrin: Neurochondrin
Probab=98.79 E-value=2.6e-05 Score=77.14 Aligned_cols=384 Identities=15% Similarity=0.107 Sum_probs=234.9
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCc--HHHHHhcCCHHHHHHhhcCCC------ChHHHHHHHHHHHHH
Q 043116 27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSP--IEKVIQSGVVPRFVEFLMRED------YPQLQFEAARALTNI 98 (482)
Q Consensus 27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~g~~~~L~~ll~~~~------~~~v~~~a~~~L~~l 98 (482)
..+..-+++|++.+..-++.++..+.++....+... .+.+.+.-+.+.+-++|.++. ....+.-|+.+|..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 356778889998887778889999999998753212 335677777888889998732 156788899999999
Q ss_pred hCCChHhHHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHH
Q 043116 99 ASGTSENTKVAIDHGAVPIFVKLLASPSD-DVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTAT 177 (482)
Q Consensus 99 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~ 177 (482)
|. .|+....---.+-||.|++.+...+. ++...|..+|..++ ..+..++.+.+.|.++.++..+.+ .+.....++
T Consensus 85 ~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al 160 (543)
T PF05536_consen 85 CR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--QSFQMEIAL 160 (543)
T ss_pred cC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHHH
Confidence 98 56654222222568999999987666 89999999999999 556778899999999999999954 455677788
Q ss_pred HHHHHhhcCCCCC----ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHH-HHHHHH----hCcHHHHHHhh
Q 043116 178 WTLSNFCRGKPQP----PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDK-IQAVIE----AGVCPRLVKLL 248 (482)
Q Consensus 178 ~~L~~L~~~~~~~----~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~~----~~~l~~L~~ll 248 (482)
.++.+++...... .......+++.+...+.......+..++..|..+....+.. ...... ..+...+..++
T Consensus 161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 8888887764321 22233466777777777777777888888888877555311 111111 22344455556
Q ss_pred CC-CChhhHHHHHHHHhHhhcCChh-------------hHHHHHhcC------chHHHHHHhcCCCchhHH--HHHHH-H
Q 043116 249 GH-RSRLVLTAALRTIGNIVTGDDF-------------QTQCIINCG------ALRYLLGLLIHNHNKSIK--KEVCW-I 305 (482)
Q Consensus 249 ~~-~~~~v~~~a~~~L~~l~~~~~~-------------~~~~l~~~~------~i~~L~~ll~~~~~~~v~--~~a~~-~ 305 (482)
++ ..+.-|..++...+.+...... ....+++.- .++.+....+.+...... -.+|+ +
T Consensus 241 ~sr~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~i 320 (543)
T PF05536_consen 241 QSRLTPSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCFSI 320 (543)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHHHH
Confidence 55 3456676676666666542111 111111110 111111111211111111 11222 1
Q ss_pred H----HHHhc--------CCHHHHHHHHH--cCChHHHHHHHhc------CChhHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 043116 306 I----SNITA--------GNREQIQAVID--AGLIGPIVNLLQD------AEFGTKKEAAWVISNATSGGTHEQIKHLVR 365 (482)
Q Consensus 306 L----~nl~~--------~~~~~~~~l~~--~~~i~~L~~ll~~------~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~ 365 (482)
+ ..++. -.++....+.. .+.+...+++|++ .++.....++++|+....-.+....+.+
T Consensus 321 lE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v-- 398 (543)
T PF05536_consen 321 LEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEV-- 398 (543)
T ss_pred HHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHH--
Confidence 1 11121 12344444443 4567777777763 2334677788999988875444333333
Q ss_pred cCChHHHHhcCCCCCH----------HHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHh
Q 043116 366 EGCVKPLCDLLPCPDP----------QIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENL 429 (482)
Q Consensus 366 ~~~l~~L~~ll~~~~~----------~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l 429 (482)
.|.++.++++..+... +.+...+-+|..+... +..++.+...|+.+.+.+.
T Consensus 399 ~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e-------------~~gr~~l~~~~g~~~l~~~ 459 (543)
T PF05536_consen 399 YGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAE-------------EEGRKILLSNGGWKLLCDD 459 (543)
T ss_pred HHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhcc-------------HHHHHHHHhCCcHHHHHHH
Confidence 4688999988764322 3566666666666632 2236666677776666654
No 74
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=1.8e-05 Score=76.71 Aligned_cols=257 Identities=13% Similarity=0.150 Sum_probs=181.4
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 043116 71 VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDF 150 (482)
Q Consensus 71 ~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 150 (482)
+-+-++.+|.+.. |-+|..|+.++..++...|+..+ -.+|.|.+-|.++|+.++.+|+..++.+++.+|.. .
T Consensus 145 La~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn--y 216 (877)
T KOG1059|consen 145 LADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN--Y 216 (877)
T ss_pred HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc--c
Confidence 4566788999988 89999999999999875555433 35799999999999999999999999999887753 1
Q ss_pred HHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCC-hhHHHHHHHHHH--HhccC
Q 043116 151 VLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSND-EKVLTDACRALA--YLADG 227 (482)
Q Consensus 151 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~~~~~~l~~L~--~l~~~ 227 (482)
+ ..-|.+..++-.+.+.=+....+..+.+|+.-.|. .-..+++.+..++++.. ..+...++.++. +++.+
T Consensus 217 L---~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPR----LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 217 L---QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR----LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred c---cccHHHHHHHhccCCCeehHHHHHHHhhccccCch----hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 1 25667778885566666677777788887766543 23567888888888654 445555655553 33333
Q ss_pred CcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHH
Q 043116 228 TNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIIS 307 (482)
Q Consensus 228 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~ 307 (482)
.++... .++ =.++.|-.++.+.++..+.-++.+++.+...++...+.- -+.++..|.+. |+.+|..|.-.+-
T Consensus 290 ~~d~~a-siq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~Dk-D~SIRlrALdLl~ 361 (877)
T KOG1059|consen 290 MSDHSA-SIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDK-DESIRLRALDLLY 361 (877)
T ss_pred CCCcHH-HHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccC-CchhHHHHHHHHH
Confidence 211111 111 135677788889999999999999999998777655422 34678899998 9999999999888
Q ss_pred HHhcCCHHHHHHHHHcCChHHHHHHHh-cCChhHHHHHHHHHHHhhcCCCH
Q 043116 308 NITAGNREQIQAVIDAGLIGPIVNLLQ-DAEFGTKKEAAWVISNATSGGTH 357 (482)
Q Consensus 308 nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~a~~aL~~l~~~~~~ 357 (482)
-+.. .+++.. ++..|+..+. ++....+...+.-+..+++..+.
T Consensus 362 gmVs--kkNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~snY 405 (877)
T KOG1059|consen 362 GMVS--KKNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQSNY 405 (877)
T ss_pred HHhh--hhhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhh
Confidence 7764 333333 4455555554 34446777777766667664443
No 75
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=4.9e-08 Score=90.71 Aligned_cols=370 Identities=12% Similarity=0.112 Sum_probs=229.7
Q ss_pred hhhhhhhccHHHHHHHhcCCCHHHHH--HHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC-------C---CChHH
Q 043116 20 LNLQSKFEILPTMVAGVWSDDNKVQL--EATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMR-------E---DYPQL 87 (482)
Q Consensus 20 ~~~~~~~~~i~~l~~~l~s~~~~~~~--~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~-------~---~~~~v 87 (482)
+..+..+...+.+++.+...++.-|. .....|.|+..-.. ..-+..|++..--.++.+ . -+.+.
T Consensus 329 Q~~e~~~~~t~k~I~~F~eS~e~~rllll~~~ll~n~~e~~~----~~~~nq~fI~a~~~~~e~~t~~~~~~vn~~~d~l 404 (743)
T COG5369 329 QLFEKDIELTSKIIDRFHESKESERLLLLTPELLFNMYELTA----GLEENQRFIAARSKMIESVTGTFKTKVNRKQDDL 404 (743)
T ss_pred hhcchheeehHHHHHHHHhcChhhhhhhcCHHHHHhHHHHhh----hhhhhhhhhHHHHHHHHhhhhhhhccCCccchHH
Confidence 44555666788888888755554432 33344444332210 000112333222222221 1 11233
Q ss_pred H-HHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcc
Q 043116 88 Q-FEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNE 166 (482)
Q Consensus 88 ~-~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~ 166 (482)
. ..++.+|..++..-.-.|..+.+..+.+.|+++|++++..+.-.+...++|+...-...+..+.+.|++..+++++ .
T Consensus 405 ~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v-~ 483 (743)
T COG5369 405 DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLV-M 483 (743)
T ss_pred HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHh-h
Confidence 3 3345566667665555677778888999999999998888888888899999877677889999999999999999 5
Q ss_pred hhhhhHHHHHHHHHHHhhcCCC-CCChhhh-hhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcH---HHHHHHHh---
Q 043116 167 HAKLSMLRTATWTLSNFCRGKP-QPPFNQI-RPALRVLAQLIRSNDEKVLTDACRALAYLADGTND---KIQAVIEA--- 238 (482)
Q Consensus 167 ~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~-~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~---~~~~~~~~--- 238 (482)
+.|..++.+..|.+.++..+.. ....... ...+..++.+.++++..++..++..|.|+..+... ..+..+..
T Consensus 484 sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~ 563 (743)
T COG5369 484 SKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPR 563 (743)
T ss_pred cchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChH
Confidence 6677899999999999998763 3333333 56788899999999999999999999999974332 11111111
Q ss_pred C-cHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHh-cCchHHHHHHhcCC---------C-chhHHHHHHHHH
Q 043116 239 G-VCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIIN-CGALRYLLGLLIHN---------H-NKSIKKEVCWII 306 (482)
Q Consensus 239 ~-~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~---------~-~~~v~~~a~~~L 306 (482)
. ++..+...+...+|-.....+.+|.+++..++.....+.. ..++..+..++... . ...+-.--....
T Consensus 564 ~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~ 643 (743)
T COG5369 564 RYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTI 643 (743)
T ss_pred HHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceee
Confidence 1 4456667777777777777799999998877765554443 24444444444211 0 111111222233
Q ss_pred HHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcC--------CCHHHHHHHHHcCChHHHHhcCCC
Q 043116 307 SNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSG--------GTHEQIKHLVREGCVKPLCDLLPC 378 (482)
Q Consensus 307 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~--------~~~~~~~~l~~~~~l~~L~~ll~~ 378 (482)
.++...+...-+.+....-.+..-+--..++.+.-.+..|.+.|+... .+.++++.+.+.|.-+.+..+..+
T Consensus 644 v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~ 723 (743)
T COG5369 644 VNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAK 723 (743)
T ss_pred ecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhcc
Confidence 333321111111111000111111111124556777788887776432 145778888999999999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 043116 379 PDPQIVTVCLIGLENI 394 (482)
Q Consensus 379 ~~~~v~~~~l~~L~~l 394 (482)
+++.|++++-.+|.++
T Consensus 724 ~Sl~vrek~~taL~~l 739 (743)
T COG5369 724 DSLIVREKIGTALENL 739 (743)
T ss_pred CcHHHHHHHHHHHHhh
Confidence 9999999999888775
No 76
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=6.4e-07 Score=84.01 Aligned_cols=319 Identities=12% Similarity=0.093 Sum_probs=206.5
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH
Q 043116 27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT 106 (482)
Q Consensus 27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 106 (482)
+.+|..+.++...|..++..|...+.|++...+. .....-+.++..+.++..+++ ..++. ++..+-.+..+-.-.+
T Consensus 84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~--~v~~~Fn~iFdvL~klsaDsd-~~V~~-~aeLLdRLikdIVte~ 159 (675)
T KOG0212|consen 84 KIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKG--EVLVYFNEIFDVLCKLSADSD-QNVRG-GAELLDRLIKDIVTES 159 (675)
T ss_pred HhhHHHHHhccCccceeeeHhHHHHHHHHHHhcc--CcccchHHHHHHHHHHhcCCc-ccccc-HHHHHHHHHHHhcccc
Confidence 4579999999999999999999999999876422 222234456777788877777 56655 3344444333111111
Q ss_pred H-HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH-HhCChHHHHHHHcchhhhhHHHHHHHHHHHhh
Q 043116 107 K-VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVL-SQGALIPLLAELNEHAKLSMLRTATWTLSNFC 184 (482)
Q Consensus 107 ~-~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~ 184 (482)
. .+-=.+++|.|-+-+...++..|...+.-|..+-.. |. .+.+. -..+++.|++++ .++..+++..+-.+++++.
T Consensus 160 ~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~-~~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL 236 (675)
T KOG0212|consen 160 ASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-PD-LEMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFL 236 (675)
T ss_pred ccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-Cc-HHHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHH
Confidence 1 122224566666666778888888877777766422 22 22221 123577788888 6677778877777676666
Q ss_pred cCCC-CCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChh-hHHHHHHH
Q 043116 185 RGKP-QPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRL-VLTAALRT 262 (482)
Q Consensus 185 ~~~~-~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~-v~~~a~~~ 262 (482)
..-. ..........++.++.-+.++++.++..++.-+..+..-.+.. -...-+|++..+++++.+.++. ++..+...
T Consensus 237 ~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~ 315 (675)
T KOG0212|consen 237 AEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDTEEMSIKEYAQMV 315 (675)
T ss_pred HHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCCccccHHHHHHHH
Confidence 5432 2222244678888999999999999999988888777554432 2344568889999999887664 44433222
Q ss_pred ---HhHhhcCChhhHHHHHhc-CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCh
Q 043116 263 ---IGNIVTGDDFQTQCIINC-GALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEF 338 (482)
Q Consensus 263 ---L~~l~~~~~~~~~~l~~~-~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 338 (482)
+..++. .+..... ++. .+++.+.+.+.++ ..+.|..+..-+..+-...|..+-. ....+++.|+.-+.+.+.
T Consensus 316 n~~l~~l~s-~~~~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql~~-h~~~if~tLL~tLsd~sd 391 (675)
T KOG0212|consen 316 NGLLLKLVS-SERLKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQLLV-HNDSIFLTLLKTLSDRSD 391 (675)
T ss_pred HHHHHHHHh-hhhhccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchhhh-hccHHHHHHHHhhcCchh
Confidence 222322 1111111 232 3677788888888 8888888876666665544443222 235689999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCH
Q 043116 339 GTKKEAAWVISNATSGGTH 357 (482)
Q Consensus 339 ~~~~~a~~aL~~l~~~~~~ 357 (482)
++...++..+.+++...+.
T Consensus 392 ~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 392 EVVLLALSLLASICSSSNS 410 (675)
T ss_pred HHHHHHHHHHHHHhcCccc
Confidence 9999999999999985443
No 77
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=6.4e-07 Score=89.70 Aligned_cols=246 Identities=16% Similarity=0.190 Sum_probs=190.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHH
Q 043116 29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKV 108 (482)
Q Consensus 29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 108 (482)
+|..++.|=| .--++.|+..|..++... ...+..-..-|++|.++++|+++. .+++---+.+.+.|..-++.++..
T Consensus 474 LPiVLQVLLS--QvHRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ~d 549 (1387)
T KOG1517|consen 474 LPIVLQVLLS--QVHRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQAD 549 (1387)
T ss_pred cchHHHHHHH--HHHHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhHHH
Confidence 4555555533 233567888888888876 667777889999999999999999 899999999999988888999988
Q ss_pred HHhCCChHHHHHhhCC---CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhc
Q 043116 109 AIDHGAVPIFVKLLAS---PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCR 185 (482)
Q Consensus 109 ~~~~g~i~~L~~ll~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~ 185 (482)
+++.++-..++..+.. -+++-|..|+.+|+.++.+.+..++.+.+.+.+...+.++.++..+-+++-++-+|..|-.
T Consensus 550 LvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~ 629 (1387)
T KOG1517|consen 550 LVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWE 629 (1387)
T ss_pred HHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhh
Confidence 8888888888888875 2468899999999999988888888899989899888888554556677779999999998
Q ss_pred CCCCCChh-hhhhHHHHHHHHhccCChhHHHHHHHHHHHhccC----CcHHHHHH------------HHhCcH---HHHH
Q 043116 186 GKPQPPFN-QIRPALRVLAQLIRSNDEKVLTDACRALAYLADG----TNDKIQAV------------IEAGVC---PRLV 245 (482)
Q Consensus 186 ~~~~~~~~-~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~----~~~~~~~~------------~~~~~l---~~L~ 245 (482)
+.+..... ...++...|..++.++-+++|..+..+|+.+..+ .+++...+ .+.-+. -.++
T Consensus 630 d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll 709 (1387)
T KOG1517|consen 630 DYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLL 709 (1387)
T ss_pred hcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHH
Confidence 76444443 3468889999999999999999999999998865 22222221 111111 2566
Q ss_pred HhhCCCChhhHHHHHHHHhHhhcCChhhHHHHH
Q 043116 246 KLLGHRSRLVLTAALRTIGNIVTGDDFQTQCII 278 (482)
Q Consensus 246 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~ 278 (482)
..+++.++-++.+..-+|..++.+...+...+.
T Consensus 710 ~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va 742 (1387)
T KOG1517|consen 710 ALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVA 742 (1387)
T ss_pred HHHhccchHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence 677888888999988888888876666555443
No 78
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.72 E-value=5.6e-06 Score=78.69 Aligned_cols=338 Identities=13% Similarity=0.108 Sum_probs=212.6
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh--HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 043116 71 VVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN--TKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCR 148 (482)
Q Consensus 71 ~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 148 (482)
++..++.+|+++. +++|.+|+...+.++.--..+ .+.+...| ..|.+.+...++++.-..+.+++.+..... .+
T Consensus 605 ivStiL~~L~~k~-p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~-~~ 680 (975)
T COG5181 605 IVSTILKLLRSKP-PDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHR-FR 680 (975)
T ss_pred HHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhc-cc
Confidence 4566678889999 999999999888876511111 12233333 346667777888888777777776652111 10
Q ss_pred H-HHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCCh-hhhhhHHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 043116 149 D-FVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPF-NQIRPALRVLAQLIRSNDEKVLTDACRALAYLAD 226 (482)
Q Consensus 149 ~-~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~ 226 (482)
. .---.|++|.+..+| .+....+..+....+..++...|.... .....+-=-|+..|.+.+.+++..|...++.++.
T Consensus 681 ~mqpPi~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 681 SMQPPISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred ccCCchhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 0 001346889999999 677788999999999999988754322 2223344447778888999999999999998885
Q ss_pred CCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHH
Q 043116 227 GTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWII 306 (482)
Q Consensus 227 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L 306 (482)
.-. -..++..|+.-|+..+..-|....-+++-.+..+... .++|.|+.=...+ +..|+.....++
T Consensus 760 aiG-------PqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf-------sVlP~lm~dY~TP-e~nVQnGvLkam 824 (975)
T COG5181 760 AIG-------PQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF-------SVLPTLMSDYETP-EANVQNGVLKAM 824 (975)
T ss_pred hcC-------HHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch-------hhHHHHHhcccCc-hhHHHHhHHHHH
Confidence 422 1234455555555544444444333444333322221 4567777777777 788998888888
Q ss_pred HHHhcCCHH-HHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHH-HHHHHHcCChHHHHhcCCCCCHHHH
Q 043116 307 SNITAGNRE-QIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQ-IKHLVREGCVKPLCDLLPCPDPQIV 384 (482)
Q Consensus 307 ~nl~~~~~~-~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~-~~~l~~~~~l~~L~~ll~~~~~~v~ 384 (482)
+.+.....+ ...++. -+.|.|-+.+.+.|+--+..|...+.+++.++.... ...++. .+..|..-.-.+.|.+.
T Consensus 825 ~fmFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~sPhvi 900 (975)
T COG5181 825 CFMFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEPSPHVI 900 (975)
T ss_pred HHHHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCCCcHHH
Confidence 887652222 122332 267788888889999999999999999988642111 111111 23333333346777787
Q ss_pred HHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043116 385 TVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCG 451 (482)
Q Consensus 385 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 451 (482)
....+++..+...-. .--.+..+.+=+-|++..|+++.=.+.+..+.-
T Consensus 901 ~~~~Eg~e~~~~~lg-------------------~g~~m~Yv~qGLFHPs~~VRk~ywtvyn~myv~ 948 (975)
T COG5181 901 QSFDEGMESFATVLG-------------------SGAMMKYVQQGLFHPSSTVRKRYWTVYNIMYVF 948 (975)
T ss_pred HHHHHHHHHHHHHhc-------------------cHHHHHHHHHhccCchHHHHHHHHHHHhhhhhc
Confidence 777777766654311 111245566667899999988887777765543
No 79
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.72 E-value=2.5e-06 Score=78.39 Aligned_cols=238 Identities=11% Similarity=0.173 Sum_probs=169.9
Q ss_pred hhHHHHHHHHhccCCh--hHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC-ChhhHHHHHHHHhHhhcCChh
Q 043116 196 RPALRVLAQLIRSNDE--KVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR-SRLVLTAALRTIGNIVTGDDF 272 (482)
Q Consensus 196 ~~~~~~L~~ll~~~~~--~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~ 272 (482)
.+.+..|+.++..++. .++..+.+.|-.+... ++.+.+..-| +..++.+-+.. .++.....+.+|.++..++++
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a--eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA--ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh--hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 6888999999998875 4588899988877632 3445566655 56666665443 456888899999999999999
Q ss_pred hHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHh
Q 043116 273 QTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA-GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNA 351 (482)
Q Consensus 273 ~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l 351 (482)
..+.++..|+++.++-..+.. ++.+...++.+|+|++. +..+..+.+++..+-+-|.-+..+.|.-++..||.+++.+
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt-~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vl 334 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRT-DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVL 334 (832)
T ss_pred HHHHHHhhcccchheeecccC-CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhh
Confidence 999999999999999999988 89999999999999997 5666677888877877777777788888999999999999
Q ss_pred hcCCCHHHHHHHHHcCChHHHHhcCCCCCH-----------------------------HHHHHHHHHHHHHHHhchhcc
Q 043116 352 TSGGTHEQIKHLVREGCVKPLCDLLPCPDP-----------------------------QIVTVCLIGLENILKVGEAEK 402 (482)
Q Consensus 352 ~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~-----------------------------~v~~~~l~~L~~l~~~~~~~~ 402 (482)
+. ..+.-..+...|.+.....++.+-|| ..-..|+.++.-..+..-+
T Consensus 335 at--~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIK-- 410 (832)
T KOG3678|consen 335 AT--NKEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIK-- 410 (832)
T ss_pred hh--hhhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHH--
Confidence 87 34444444455543333333221111 1112233333222221111
Q ss_pred ccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 043116 403 NTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILET 447 (482)
Q Consensus 403 ~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~ 447 (482)
+.. -....|.+.|.++.|.++..+++..-...|...+.-
T Consensus 411 s~Q------~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtv 449 (832)
T KOG3678|consen 411 SLQ------GKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTV 449 (832)
T ss_pred Hhc------cchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 111 126778999999999999999887777777777653
No 80
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.72 E-value=1.2e-06 Score=80.37 Aligned_cols=273 Identities=17% Similarity=0.133 Sum_probs=189.6
Q ss_pred HHHHHhcCCHHHHHHhhcCCCC-hHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHh
Q 043116 63 IEKVIQSGVVPRFVEFLMREDY-PQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLA-SPSDDVREQAVWALGNV 140 (482)
Q Consensus 63 ~~~~~~~g~~~~L~~ll~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l 140 (482)
.+.+...|++..|++++..++. ..++.+|.+.|-.+.. .++++.+...| +..++.+-+ .+.++..+..+..|.++
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 3455667899999999998872 3469999999999875 78888888877 555555554 45678889999999999
Q ss_pred hCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC-CCCC-hhhhhhHHHHHHHHhccCChhHHHHHH
Q 043116 141 AGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK-PQPP-FNQIRPALRVLAQLIRSNDEKVLTDAC 218 (482)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~-~~~~-~~~~~~~~~~L~~ll~~~~~~~~~~~l 218 (482)
..++.+....++..|++..++.-+ ...++.+.+.++.+|.|+.... ...+ ..+...+..-|..+-.+.|+-.+.++|
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 998888778888999999998888 6667999999999999999876 2222 223345566677776777888899999
Q ss_pred HHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhH
Q 043116 219 RALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSI 298 (482)
Q Consensus 219 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v 298 (482)
.+.+.++.+.+ ....+..+|.+...-.++.+.+|.-- +.+..+..+ --....++.|+.+|++. .-+.
T Consensus 329 lAV~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP~~F----------ARD~hd~aQ-G~~~d~LqRLvPlLdS~-R~EA 395 (832)
T KOG3678|consen 329 LAVAVLATNKE-VEREVRKSGTLALVEPLVASLDPGRF----------ARDAHDYAQ-GRGPDDLQRLVPLLDSN-RLEA 395 (832)
T ss_pred HHHhhhhhhhh-hhHHHhhccchhhhhhhhhccCcchh----------hhhhhhhhc-cCChHHHHHhhhhhhcc-hhhh
Confidence 99999997654 33446666776666666666555311 111111100 01113567888899877 6666
Q ss_pred HHHHHHHHHHHhc-CCH-HHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhh
Q 043116 299 KKEVCWIISNITA-GNR-EQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNAT 352 (482)
Q Consensus 299 ~~~a~~~L~nl~~-~~~-~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~ 352 (482)
+..+++-++.=+. .+. ...+-+-+-|.|..|.++..+.+.--.+.|-.+|.-+-
T Consensus 396 q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviG 451 (832)
T KOG3678|consen 396 QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIG 451 (832)
T ss_pred hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhc
Confidence 6666665554443 111 11233446788999999888776655555666666553
No 81
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.71 E-value=6.4e-06 Score=82.03 Aligned_cols=354 Identities=13% Similarity=0.122 Sum_probs=222.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHH
Q 043116 31 TMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAI 110 (482)
Q Consensus 31 ~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 110 (482)
.|++.+.+.|.+.++.|..-|.+=+... .-..+.--+..++..++++|++.+ .++|..|++|++-++..-++.+ +
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~---l 83 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQ---L 83 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHH---H
Confidence 6788888999999999999888776653 222222224567889999999999 9999999999999986333322 1
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCC----hHHHHHHHcchhhh-hHHHHHHHHHHHhhc
Q 043116 111 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGA----LIPLLAELNEHAKL-SMLRTATWTLSNFCR 185 (482)
Q Consensus 111 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~----i~~l~~~l~~~~~~-~~~~~a~~~L~~L~~ 185 (482)
+ ..++.|+.-+-++....|..+.-.|......-++.........+ .+.+...+....+. .++..++..+..+..
T Consensus 84 e-~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 84 E-TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred H-HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 1 23455555444444445543333333222222221112222223 33444444332332 366667777665554
Q ss_pred CCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC-ChhhHHHHHHHHh
Q 043116 186 GKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR-SRLVLTAALRTIG 264 (482)
Q Consensus 186 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~ 264 (482)
.-...-.....+++.++..-+.++..-++..++.+|+.++...+.. ++ .+++..+++-|..+ .+.....-+.+|+
T Consensus 163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---ly-~~li~~Ll~~L~~~~q~~~~rt~Iq~l~ 238 (1233)
T KOG1824|consen 163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---LY-VELIEHLLKGLSNRTQMSATRTYIQCLA 238 (1233)
T ss_pred hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 4322222244677778888888889999999999999999554321 11 24566777777553 4555566677888
Q ss_pred HhhcCChhhHHHHHhcCchHHHHHHh---cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc------
Q 043116 265 NIVTGDDFQTQCIINCGALRYLLGLL---IHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQD------ 335 (482)
Q Consensus 265 ~l~~~~~~~~~~l~~~~~i~~L~~ll---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~------ 335 (482)
.+++........ .-..+++.+.+.. +.. +.+.|+....++..+...+|..+-..+. .++..+++.+..
T Consensus 239 ~i~r~ag~r~~~-h~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~y 315 (1233)
T KOG1824|consen 239 AICRQAGHRFGS-HLDKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHVP-EIINLCLSYISYDPNYNY 315 (1233)
T ss_pred HHHHHhcchhhc-ccchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccch-HHHHHHHHHhccCCCCCC
Confidence 887643322111 1124677777777 555 7889999999999888766665544433 244555554421
Q ss_pred ----------------------------CChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHH
Q 043116 336 ----------------------------AEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVC 387 (482)
Q Consensus 336 ----------------------------~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~ 387 (482)
-++.+|++|+.++..+... ..+....+. +..-+.++.-++..+..|+.-+
T Consensus 316 d~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~-q~l~p~lI~RfkEREEnVk~dv 393 (1233)
T KOG1824|consen 316 DTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFY-QTLGPALISRFKEREENVKADV 393 (1233)
T ss_pred CCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHH-HHhCHHHHHHHHHHhhhHHHHH
Confidence 0134899999999999874 444444433 3456888888888888898888
Q ss_pred HHHHHHHHHhch
Q 043116 388 LIGLENILKVGE 399 (482)
Q Consensus 388 l~~L~~l~~~~~ 399 (482)
+.++..++...+
T Consensus 394 f~~yi~ll~qt~ 405 (1233)
T KOG1824|consen 394 FHAYIALLKQTR 405 (1233)
T ss_pred HHHHHHHHHcCC
Confidence 888888887543
No 82
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.70 E-value=4.3e-05 Score=76.36 Aligned_cols=331 Identities=11% Similarity=0.112 Sum_probs=208.5
Q ss_pred hhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCCh
Q 043116 78 FLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGAL 157 (482)
Q Consensus 78 ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 157 (482)
+.+...+..++.-|+-.|+.+-.+-+.. -..+.-..+++.+.+++++++.+|..+|++++.++-+ ..+
T Consensus 826 ~~s~~s~~~ikvfa~LslGElgr~~~~s----~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~--------~yL 893 (1233)
T KOG1824|consen 826 LQSPKSSDSIKVFALLSLGELGRRKDLS----PQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLP--------KYL 893 (1233)
T ss_pred HhCCCCchhHHHHHHhhhhhhccCCCCC----cchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchH--------hHH
Confidence 3333333577888888888886632221 1234556788999999999999999999999965422 146
Q ss_pred HHHHHHHcchhhhhHHHHHHHHHHHhhcCC-CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHH
Q 043116 158 IPLLAELNEHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVI 236 (482)
Q Consensus 158 ~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 236 (482)
|.++..+... +.-+.-.+..|....... ..........+...|..-.....+..|.-+..||+.++..+++.
T Consensus 894 pfil~qi~sq--pk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epes----- 966 (1233)
T KOG1824|consen 894 PFILEQIESQ--PKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPES----- 966 (1233)
T ss_pred HHHHHHHhcc--hHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHH-----
Confidence 6677766332 222222333333333222 22222233445555555555667778999999999999877753
Q ss_pred HhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHH
Q 043116 237 EAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQ 316 (482)
Q Consensus 237 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~ 316 (482)
.++.|-..+.++.+..|..++.++.......+.-...+. ...+..++.+++++ +.+||+.|..++...+...|..
T Consensus 967 ---LlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~l-k~~ig~fl~~~~dp-Dl~VrrvaLvv~nSaahNKpsl 1041 (1233)
T KOG1824|consen 967 ---LLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLL-KQQIGDFLKLLRDP-DLEVRRVALVVLNSAAHNKPSL 1041 (1233)
T ss_pred ---HHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHH-HHHHHHHHHHHhCC-chhHHHHHHHHHHHHHccCHhH
Confidence 468898999999999999998888877765555444333 35677889999999 9999999999999998777776
Q ss_pred HHHHHHcCChHHHHHH----------Hh--------cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC
Q 043116 317 IQAVIDAGLIGPIVNL----------LQ--------DAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC 378 (482)
Q Consensus 317 ~~~l~~~~~i~~L~~l----------l~--------~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~ 378 (482)
++.++. .++|.|.+- .+ ++.-++|+.|..++..+...+- ....+. .++..+..-|++
T Consensus 1042 IrDllp-eLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscl--d~~dit--~Fl~~~~~GL~D 1116 (1233)
T KOG1824|consen 1042 IRDLLP-ELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCL--DRLDIT--EFLNHVEDGLED 1116 (1233)
T ss_pred HHHHHH-HHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhh--hhccHH--HHHHHHHhhcch
Confidence 654443 233333321 11 1235689999999998876321 111111 133344444443
Q ss_pred CCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhh------------cCCCHHHHHHHHHHHH
Q 043116 379 PDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQ------------SHDNNDIHEMSVKILE 446 (482)
Q Consensus 379 ~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~------------~~~~~~v~~~a~~~l~ 446 (482)
. .+++..+.-.+.++...++... .+.+.+ .++.|..-. .....++.+.|.+++-
T Consensus 1117 h-ydiKmlt~l~l~rLa~lcPs~V-----------lqrlD~--l~EpLr~t~~~k~k~~svKqE~ek~~eLkRSAlRav~ 1182 (1233)
T KOG1824|consen 1117 H-YDIKMLTFLMLARLADLCPSAV-----------LQRLDR--LVEPLRKTCTLKVKANSVKQEFEKQDELKRSALRAVA 1182 (1233)
T ss_pred h-hHHHHHHHHHHHHHHhhCcHHH-----------HHHHHH--HHHHHHHHhhcccccchHhHhHHHHHHHHHHHHHHHH
Confidence 3 6888888888999988776642 222111 123333321 1234677888888888
Q ss_pred HhcCC
Q 043116 447 TYWCG 451 (482)
Q Consensus 447 ~~~~~ 451 (482)
.+...
T Consensus 1183 ~L~~i 1187 (1233)
T KOG1824|consen 1183 ALLTI 1187 (1233)
T ss_pred HHhcc
Confidence 87444
No 83
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=0.00015 Score=69.85 Aligned_cols=343 Identities=15% Similarity=0.136 Sum_probs=219.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHH
Q 043116 28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTK 107 (482)
Q Consensus 28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 107 (482)
.+..+++-+..+.+++|.....+|.-+......... ..+.+.+.+++..+. ..-+..+.+.++.+..+. ...
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~-----~~~l~~l~~ll~~~~-~~~~~~aa~~~ag~v~g~--~i~ 168 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG-----EYVLELLLELLTSTK-IAERAGAAYGLAGLVNGL--GIE 168 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH-----HHHHHHHHHHhcccc-HHHHhhhhHHHHHHHcCc--HHh
Confidence 467778888888899998888888777654322222 235667888888777 788899999999988743 345
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHH-HHHHHHHhhCCC-hhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhc
Q 043116 108 VAIDHGAVPIFVKLLASPSDDVREQ-AVWALGNVAGDS-SRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCR 185 (482)
Q Consensus 108 ~~~~~g~i~~L~~ll~~~~~~~~~~-a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~ 185 (482)
.+.+.+++..+.+.+.+.....++. +..+.-..+..- +...-.+. ..++.++... .+..+.++..+..+...+.+
T Consensus 169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv--~~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIV--PILPSILTNF-GDKINKVREAAVEAAKAIMR 245 (569)
T ss_pred hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHH--hhHHHHHHHh-hccchhhhHHHHHHHHHHHH
Confidence 5667788999999988765554442 333333332111 11111111 1344445444 44556777776666665554
Q ss_pred CCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 043116 186 GKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGN 265 (482)
Q Consensus 186 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 265 (482)
.-+ ......++|.++.-+....+.....++..++.++...+.+.. .+-..++|.+...|.+..++++..+..+|.+
T Consensus 246 ~~~---~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT~~evr~a~~~~l~~ 321 (569)
T KOG1242|consen 246 CLS---AYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDTKPEVRKAGIETLLK 321 (569)
T ss_pred hcC---cchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccCCHHHHHHHHHHHHH
Confidence 421 112244555555555545788889999999999987776654 4555889999999999999999999999999
Q ss_pred hhcC--ChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC----ChHHHHHHHhcCChh
Q 043116 266 IVTG--DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAG----LIGPIVNLLQDAEFG 339 (482)
Q Consensus 266 l~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~----~i~~L~~ll~~~~~~ 339 (482)
++.- +++. . .++|.|++.+.++ ...+. ++...|+.-.. + ..++.. ++|.|.+-+...+..
T Consensus 322 ~~svidN~dI-~-----~~ip~Lld~l~dp-~~~~~-e~~~~L~~ttF-----V-~~V~~psLalmvpiL~R~l~eRst~ 387 (569)
T KOG1242|consen 322 FGSVIDNPDI-Q-----KIIPTLLDALADP-SCYTP-ECLDSLGATTF-----V-AEVDAPSLALMVPILKRGLAERSTS 387 (569)
T ss_pred HHHhhccHHH-H-----HHHHHHHHHhcCc-ccchH-HHHHhhcceee-----e-eeecchhHHHHHHHHHHHHhhccch
Confidence 8863 2332 1 3678888888877 42222 22222222111 0 011111 345555555667888
Q ss_pred HHHHHHHHHHHhhcCC-CHHHH-HHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhc
Q 043116 340 TKKEAAWVISNATSGG-THEQI-KHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAE 401 (482)
Q Consensus 340 ~~~~a~~aL~~l~~~~-~~~~~-~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~ 401 (482)
+++.++..+.|++.-- ++... .++-+ .++-|-..+....|++|..+..+|..+.+.....
T Consensus 388 ~kr~t~~IidNm~~LveDp~~lapfl~~--Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 388 IKRKTAIIIDNMCKLVEDPKDLAPFLPS--LLPGLKENLDDAVPEVRAVAARALGALLERLGEV 449 (569)
T ss_pred hhhhHHHHHHHHHHhhcCHHHHhhhHHH--HhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999998643 33332 23222 5666777777788999999999998888754443
No 84
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=1.8e-05 Score=69.12 Aligned_cols=272 Identities=13% Similarity=0.150 Sum_probs=174.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH--hcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH
Q 043116 29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVI--QSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT 106 (482)
Q Consensus 29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 106 (482)
+-.+++++.+.+|.++..|...+..++... .+.+. +...++.+.+++.... + ...|+.++.|++. .+..+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~~----~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq-~~~l~ 76 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGRG----LQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQ-KEELR 76 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhccccc----hhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHh-hHHHH
Confidence 456889999999999999999998887652 12222 3456888899998877 4 6789999999998 78888
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhC-----ChHHHHHHHcchhhh--hHHHHHHHH
Q 043116 107 KVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQG-----ALIPLLAELNEHAKL--SMLRTATWT 179 (482)
Q Consensus 107 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-----~i~~l~~~l~~~~~~--~~~~~a~~~ 179 (482)
+.+++. .+..+...+.++...+....+..++|++.............. .+..+....-+..-. .-..+.+.+
T Consensus 77 ~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 77 KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence 888877 778888888877677778889999999987766554443221 233333333222211 334567778
Q ss_pred HHHhhcCCCCCChhhhhhH--HHHHHHHhccCChhHH-HHHHHHHHHhccCCcHHHHHHHHh--CcHHHHH---------
Q 043116 180 LSNFCRGKPQPPFNQIRPA--LRVLAQLIRSNDEKVL-TDACRALAYLADGTNDKIQAVIEA--GVCPRLV--------- 245 (482)
Q Consensus 180 L~~L~~~~~~~~~~~~~~~--~~~L~~ll~~~~~~~~-~~~l~~L~~l~~~~~~~~~~~~~~--~~l~~L~--------- 245 (482)
+.|+++....+........ .+.+..+-. .+..+| ...+..|.|.+-... ....+.+. .+++.++
T Consensus 156 f~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~-~h~~lL~e~~~lLp~iLlPlagpee~ 233 (353)
T KOG2973|consen 156 FANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAK-LHEVLLDESINLLPAILLPLAGPEEL 233 (353)
T ss_pred HHHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccch-hHHHHhcchHHHHHHHHhhcCCcccc
Confidence 8888887544333333222 223333333 455554 346777777663322 22223332 1222221
Q ss_pred ------------HhhC-----CCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHH
Q 043116 246 ------------KLLG-----HRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISN 308 (482)
Q Consensus 246 ------------~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~n 308 (482)
+++. .+++.++..-+.+|.-++. ....++.+...|+.+.+-.+-+..++++++..+-.....
T Consensus 234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~ 312 (353)
T KOG2973|consen 234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQM 312 (353)
T ss_pred CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 2231 2467899999999999987 444456677888888888887777677777655555555
Q ss_pred HhcC
Q 043116 309 ITAG 312 (482)
Q Consensus 309 l~~~ 312 (482)
+...
T Consensus 313 Lv~~ 316 (353)
T KOG2973|consen 313 LVRL 316 (353)
T ss_pred HHhc
Confidence 5443
No 85
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=1.2e-05 Score=70.32 Aligned_cols=268 Identities=15% Similarity=0.112 Sum_probs=167.6
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHH--hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 043116 72 VPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAI--DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRD 149 (482)
Q Consensus 72 ~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 149 (482)
+.-++.++.+.+ |.++..|+..+..++.. .. +.+. +...++.+.+++....+ .+.|+.++.|++.. +..++
T Consensus 5 l~elv~ll~~~s-P~v~~~AV~~l~~lt~~--~~-~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~ 77 (353)
T KOG2973|consen 5 LVELVELLHSLS-PPVRKAAVEHLLGLTGR--GL-QSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRK 77 (353)
T ss_pred HHHHHHHhccCC-hHHHHHHHHHHhhcccc--ch-hhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHH
Confidence 345789999999 99999999999999874 22 2222 23467888888887666 67799999999944 55677
Q ss_pred HHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhh-------hhhHHHHHHHHhccCC--hhHHHHHHHH
Q 043116 150 FVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQ-------IRPALRVLAQLIRSND--EKVLTDACRA 220 (482)
Q Consensus 150 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~-------~~~~~~~L~~ll~~~~--~~~~~~~l~~ 220 (482)
.+++. ++..++..+ .++....-...+..|+|+++......... ..+++.....+.+.+- ..-..+.+..
T Consensus 78 ~ll~~-~~k~l~~~~-~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 78 KLLQD-LLKVLMDML-TDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHHHH-HHHHHHHHh-cCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence 77665 666677776 55555677788999999998763221111 1334444444444332 2345667777
Q ss_pred HHHhccCCcHHHHHHHHhCc--HHHHHHhhCCCChhhHHH-HHHHHhHhhcCChhhHHHHHhc--CchHHHHHHh-----
Q 043116 221 LAYLADGTNDKIQAVIEAGV--CPRLVKLLGHRSRLVLTA-ALRTIGNIVTGDDFQTQCIINC--GALRYLLGLL----- 290 (482)
Q Consensus 221 L~~l~~~~~~~~~~~~~~~~--l~~L~~ll~~~~~~v~~~-a~~~L~~l~~~~~~~~~~l~~~--~~i~~L~~ll----- 290 (482)
+.|++..... +..+.+... .+.++.+-. .+..+|.. .+++|.|.+.....+-. +++. ++++.++--+
T Consensus 156 f~nls~~~~g-R~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e~~~lLp~iLlPlagpee 232 (353)
T KOG2973|consen 156 FANLSQFEAG-RKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEV-LLDESINLLPAILLPLAGPEE 232 (353)
T ss_pred HHHHhhhhhh-hhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHH-HhcchHHHHHHHHhhcCCccc
Confidence 7888865432 333444332 233333333 45555544 78899998875554433 3322 3344443322
Q ss_pred ----------------c----CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-CChhHHHHHHHHHH
Q 043116 291 ----------------I----HNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQD-AEFGTKKEAAWVIS 349 (482)
Q Consensus 291 ----------------~----~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~a~~aL~ 349 (482)
. ..+++.+|+.-..+|.-+|.. ...++.+...|+.+.+-.+-+. ++++++. ++.-+.
T Consensus 233 ~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~-ace~vv 310 (353)
T KOG2973|consen 233 LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIRE-ACEQVV 310 (353)
T ss_pred cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHH-HHHHHH
Confidence 1 122789999999999999874 4457778888888887777664 4555555 444444
Q ss_pred Hhhc
Q 043116 350 NATS 353 (482)
Q Consensus 350 ~l~~ 353 (482)
++..
T Consensus 311 q~Lv 314 (353)
T KOG2973|consen 311 QMLV 314 (353)
T ss_pred HHHH
Confidence 4444
No 86
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=0.00014 Score=64.23 Aligned_cols=348 Identities=12% Similarity=0.107 Sum_probs=214.4
Q ss_pred HHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh--hhH--HHHHHhCChHHHHHHH
Q 043116 89 FEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSS--RCR--DFVLSQGALIPLLAEL 164 (482)
Q Consensus 89 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~--~~~--~~~~~~~~i~~l~~~l 164 (482)
..++.||-.+... .+.. -+-.+..+.|-.-|..++..++..++..++.+..+.. ... ..+++.++++.++..+
T Consensus 61 tlcVscLERLfka-kega--hlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcI 137 (524)
T KOG4413|consen 61 TLCVSCLERLFKA-KEGA--HLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCI 137 (524)
T ss_pred hhHHHHHHHHHhh-ccch--hhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHH
Confidence 3366677776651 1111 1122456667777777889999999999998885544 222 2345778888888888
Q ss_pred cchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHH--HHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHH
Q 043116 165 NEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRV--LAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCP 242 (482)
Q Consensus 165 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~--L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~ 242 (482)
-..+.++...+...+..++............+.... +..+-...+.-.+..++..+..+.+.++........+|.+.
T Consensus 138 -ggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLld 216 (524)
T KOG4413|consen 138 -GGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLD 216 (524)
T ss_pred -cCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHH
Confidence 677788888999999998876422222222222221 22232334566777888888888888888888888889999
Q ss_pred HHHHhhCC-CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCC-chhHHHHHHHHHHHHhcC------CH
Q 043116 243 RLVKLLGH-RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNH-NKSIKKEVCWIISNITAG------NR 314 (482)
Q Consensus 243 ~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~~v~~~a~~~L~nl~~~------~~ 314 (482)
.|..-|+- .+.-++..++.....++. .+...+.+.+.|+++.+..++.... +|.-+-.+....+.+... ++
T Consensus 217 lLeaElkGteDtLVianciElvteLae-teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvse 295 (524)
T KOG4413|consen 217 LLEAELKGTEDTLVIANCIELVTELAE-TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSE 295 (524)
T ss_pred HHHHHhcCCcceeehhhHHHHHHHHHH-HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCH
Confidence 98888866 566788889998888887 3444566778899999999997643 444455455555554431 22
Q ss_pred HHH-HHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCC--hHHHHh-cCC---CCCHHHHHHH
Q 043116 315 EQI-QAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGC--VKPLCD-LLP---CPDPQIVTVC 387 (482)
Q Consensus 315 ~~~-~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~--l~~L~~-ll~---~~~~~v~~~~ 387 (482)
+.+ ..+. -+++..++++...|+..+..|+.+++.+-++ .+....+...|- .+.++. ..+ +.......+|
T Consensus 296 eaiceali--iaidgsfEmiEmnDpdaieaAiDalGilGSn--teGadlllkTgppaaehllarafdqnahakqeaaiha 371 (524)
T KOG4413|consen 296 EAICEALI--IAIDGSFEMIEMNDPDAIEAAIDALGILGSN--TEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHA 371 (524)
T ss_pred HHHHHHHH--HHHHhhHHhhhcCCchHHHHHHHHHHhccCC--cchhHHHhccCChHHHHHHHHHhcccccchHHHHHHH
Confidence 222 1122 1466667777889999999999999999773 344455555543 233322 222 2222344455
Q ss_pred HHHHHHHHHhchhccccCCCCcccHH----HHHHHHh---chHHHHHHhhcCCCHHHHHHHHHHHHH
Q 043116 388 LIGLENILKVGEAEKNTDNIGDVNQY----AQLVEEA---EGLEKIENLQSHDNNDIHEMSVKILET 447 (482)
Q Consensus 388 l~~L~~l~~~~~~~~~~~~~~~~~~~----~~~l~~~---~~~~~l~~l~~~~~~~v~~~a~~~l~~ 447 (482)
+.++...++..+.... ++ ...... .....++ .-.+....+...+.++++-.+.+.+..
T Consensus 372 LaaIagelrlkpeqit-Dg-kaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTA 436 (524)
T KOG4413|consen 372 LAAIAGELRLKPEQIT-DG-KAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTA 436 (524)
T ss_pred HHHhhccccCChhhcc-cc-HHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHH
Confidence 5555555443333211 00 001111 1111111 234555666788999999988876654
No 87
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.62 E-value=3.7e-05 Score=72.13 Aligned_cols=333 Identities=14% Similarity=0.055 Sum_probs=205.7
Q ss_pred HHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchh-hhhHH
Q 043116 95 LTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHA-KLSML 173 (482)
Q Consensus 95 L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-~~~~~ 173 (482)
|..+....|..+..+.-....+.+..++-+++.++|..+.+++..+..+... -+.+.+.++-..++..+..+. ...-+
T Consensus 7 Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER 85 (371)
T PF14664_consen 7 LVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVER 85 (371)
T ss_pred HHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHH
Confidence 3334444555554444434455555555555599999999999999866544 455666665555666664433 33446
Q ss_pred HHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCCh
Q 043116 174 RTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSR 253 (482)
Q Consensus 174 ~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 253 (482)
.+|...+..+..... .....-.+++..++.+..+.++..+..|+.+|+.++-.+++ .+...|++..+...+.++..
T Consensus 86 ~QALkliR~~l~~~~-~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~ 161 (371)
T PF14664_consen 86 EQALKLIRAFLEIKK-GPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSF 161 (371)
T ss_pred HHHHHHHHHHHHhcC-CcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccH
Confidence 678888888877632 22234578999999999999999999999999999977764 47788999999999988766
Q ss_pred hhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCC------Cch--hHHHHHHHHHHHHhcCCHHHHHHHHHc--
Q 043116 254 LVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHN------HNK--SIKKEVCWIISNITAGNREQIQAVIDA-- 323 (482)
Q Consensus 254 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~------~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~-- 323 (482)
++....+.++..+.. +|...+.+...--++.++..+.+. .+. +.-..+..++..+.. +....-.+...
T Consensus 162 ~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lr-sW~GLl~l~~~~~ 239 (371)
T PF14664_consen 162 SISESLLDTLLYLLD-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLR-SWPGLLYLSMNDF 239 (371)
T ss_pred hHHHHHHHHHHHHhC-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHh-cCCceeeeecCCc
Confidence 688888888888876 555445444433344444444332 122 233344555555543 23333333322
Q ss_pred CChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHH------HcCCh---HHHHhcCCCCCH---HHHHHHHHHH
Q 043116 324 GLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLV------REGCV---KPLCDLLPCPDP---QIVTVCLIGL 391 (482)
Q Consensus 324 ~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~------~~~~l---~~L~~ll~~~~~---~v~~~~l~~L 391 (482)
..+..|++.+..++++++...+..+..+.....+.-..... ..|-. ..+.+-...... .........+
T Consensus 240 ~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~ 319 (371)
T PF14664_consen 240 RGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLV 319 (371)
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHH
Confidence 47888999999999999999999999997754332111101 11111 001100000000 0000011111
Q ss_pred HHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCC-CHHHHHHHHHHHHHhc
Q 043116 392 ENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHD-NNDIHEMSVKILETYW 449 (482)
Q Consensus 392 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~~ 449 (482)
.+... -....|.++|.++.|.++..+. ++.+..+|.-++..++
T Consensus 320 ~~y~a---------------Lll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 320 NHYLA---------------LLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HHHHH---------------HHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 11111 1355667999999999998776 8899999998887765
No 88
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.55 E-value=2.5e-05 Score=78.82 Aligned_cols=373 Identities=14% Similarity=0.118 Sum_probs=215.5
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChH
Q 043116 37 WSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVP 116 (482)
Q Consensus 37 ~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 116 (482)
+...+.++..++.-+.+++..-.... ...++++.+.++..++. ..+|+.|...+.++.......- . ....+.+
T Consensus 247 ~d~~~~Vr~~~a~~l~~~a~~~~~~~----~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~-d-~~~~~~~ 319 (759)
T KOG0211|consen 247 QDDTPMVRRAVASNLGNIAKVLESEI----VKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD-D-VVKSLTE 319 (759)
T ss_pred cccchhhHHHHHhhhHHHHHHHHHHH----HHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch-h-hhhhhhH
Confidence 44456666666666666665442221 23456666666666666 5666666666555554111110 0 1112345
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhC----------------------------------------CChhhHHHHHHhCC
Q 043116 117 IFVKLLASPSDDVREQAVWALGNVAG----------------------------------------DSSRCRDFVLSQGA 156 (482)
Q Consensus 117 ~L~~ll~~~~~~~~~~a~~~L~~l~~----------------------------------------~~~~~~~~~~~~~~ 156 (482)
.++....+.+..++.........++. .+..+...+....+
T Consensus 320 ~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~i 399 (759)
T KOG0211|consen 320 SLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSI 399 (759)
T ss_pred HHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhh
Confidence 55555555444444433332222221 00001111112222
Q ss_pred hHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHH
Q 043116 157 LIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVI 236 (482)
Q Consensus 157 i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 236 (482)
++.+-.++ .+.+..++...+..+..+....+ ....+....|.+...+++.++.++....+.+..+-...+..-....
T Consensus 400 lp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~ 476 (759)
T KOG0211|consen 400 LPEVQVLV-LDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTV 476 (759)
T ss_pred hHHHHHHH-hcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhh
Confidence 33333333 33444444444433333332222 2223466778888888999999999999877665544333333345
Q ss_pred HhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHH
Q 043116 237 EAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQ 316 (482)
Q Consensus 237 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~ 316 (482)
....++.+..+-.+..+.++.+.++.+..++.... ..+.+...-+.+...+.+. ...+++.|+..+.-++.....
T Consensus 477 s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~~~G~- 551 (759)
T KOG0211|consen 477 SNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVETFGS- 551 (759)
T ss_pred hhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHHHhCc-
Confidence 55667888887777788899999999988886443 2234444556666667766 778999999999888862111
Q ss_pred HHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 043116 317 IQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILK 396 (482)
Q Consensus 317 ~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~ 396 (482)
.......++.++.+...++...|...+.++..++.....+ +.....++.+.++..++.+.|+..+++.|..+..
T Consensus 552 --~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e----i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 552 --EWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE----ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILK 625 (759)
T ss_pred --chhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH----HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHh
Confidence 1112246777777766667888888888888776533322 2334488999999999999999999999999886
Q ss_pred hchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHH
Q 043116 397 VGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKIL 445 (482)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l 445 (482)
.-... ..+....+.++.+-.+++.+++-+|....
T Consensus 626 ~L~~~---------------~~~~~v~pll~~L~~d~~~dvr~~a~~a~ 659 (759)
T KOG0211|consen 626 LLDES---------------VRDEEVLPLLETLSSDQELDVRYRAILAF 659 (759)
T ss_pred hcchH---------------HHHHHHHHHHHHhccCcccchhHHHHHHH
Confidence 53221 12333455666666677766665555443
No 89
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=0.00014 Score=71.47 Aligned_cols=283 Identities=20% Similarity=0.232 Sum_probs=185.4
Q ss_pred HhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCC
Q 043116 77 EFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGA 156 (482)
Q Consensus 77 ~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 156 (482)
+...+.. +-+|..|+.++-.+=.-+++.... ++..+-.+|.+.++.+.-.|+.++-.+|-+. -+.+ .+-
T Consensus 150 ~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~q-----L~e~I~~LLaD~splVvgsAv~AF~evCPer---ldLI--Hkn 218 (968)
T KOG1060|consen 150 KAVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQ-----LEEVIKKLLADRSPLVVGSAVMAFEEVCPER---LDLI--HKN 218 (968)
T ss_pred HHhcCCc-HHHHHHHHHhhHHHhcCChhhHHH-----HHHHHHHHhcCCCCcchhHHHHHHHHhchhH---HHHh--hHH
Confidence 4445666 899999999999998777777663 3566777899999999999999999998332 2222 224
Q ss_pred hHHHHHHHcchhhhhHHHHHHHHHHHhhcCC-CCC----------------------------ChhhhhhHHHHHHHHhc
Q 043116 157 LIPLLAELNEHAKLSMLRTATWTLSNFCRGK-PQP----------------------------PFNQIRPALRVLAQLIR 207 (482)
Q Consensus 157 i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~-~~~----------------------------~~~~~~~~~~~L~~ll~ 207 (482)
...+++++.+ -+.=-+......|..-++.. +.. ......-+++..-.++.
T Consensus 219 yrklC~ll~d-vdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~ 297 (968)
T KOG1060|consen 219 YRKLCRLLPD-VDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQ 297 (968)
T ss_pred HHHHHhhccc-hhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHh
Confidence 5566666632 22212223334444334432 111 01112346666777888
Q ss_pred cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHH
Q 043116 208 SNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLL 287 (482)
Q Consensus 208 ~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~ 287 (482)
+.++.+...++.+...++... ... .++..|+.+|.++ ..++.-.+..+..++...+.... |.+-
T Consensus 298 S~n~sVVmA~aql~y~lAP~~--~~~-----~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~--------P~lK 361 (968)
T KOG1060|consen 298 SRNPSVVMAVAQLFYHLAPKN--QVT-----KIAKALVRLLRSN-REVQYVVLQNIATISIKRPTLFE--------PHLK 361 (968)
T ss_pred cCCcHHHHHHHhHHHhhCCHH--HHH-----HHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhhh--------hhhh
Confidence 999999999999999999432 222 3567888888643 45777788888888765555422 2333
Q ss_pred HHh-cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 043116 288 GLL-IHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVRE 366 (482)
Q Consensus 288 ~ll-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~ 366 (482)
.+. .+.....++.--..+|.+++... .+. .+++.+..++.+.+.++...++.+|+.++.... . +..
T Consensus 362 sFfv~ssDp~~vk~lKleiLs~La~es--ni~-----~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~-s-----v~~ 428 (968)
T KOG1060|consen 362 SFFVRSSDPTQVKILKLEILSNLANES--NIS-----EILRELQTYIKSSDRSFAAAAVKAIGRCASRIG-S-----VTD 428 (968)
T ss_pred ceEeecCCHHHHHHHHHHHHHHHhhhc--cHH-----HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC-c-----hhh
Confidence 332 23313456666677888887521 111 255667777777777788888888888876321 1 233
Q ss_pred CChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchh
Q 043116 367 GCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEA 400 (482)
Q Consensus 367 ~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~ 400 (482)
.++..|+.++++.+..|+..+...+..++...+.
T Consensus 429 tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~ 462 (968)
T KOG1060|consen 429 TCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPA 462 (968)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHhhChH
Confidence 4788899999999988998899999999876554
No 90
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.49 E-value=3.6e-06 Score=63.95 Aligned_cols=153 Identities=11% Similarity=0.060 Sum_probs=122.0
Q ss_pred chHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHH
Q 043116 282 ALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIK 361 (482)
Q Consensus 282 ~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~ 361 (482)
.+..|+.-.....+.+.+.....-|+|++. +|.+...+.+.++++.+++.+..++..+...++.+|||++. ++.+.+
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~n~~ 93 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKTNAK 93 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChHHHH
Confidence 455666666655588899998888999875 57778889999999999999999999999999999999998 788899
Q ss_pred HHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHH
Q 043116 362 HLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMS 441 (482)
Q Consensus 362 ~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a 441 (482)
.+.+.+.++.++..++++...++..++..+..+...++.. +..+-.-..++.++.+..+.+-+.+..|
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~------------r~ell~p~Vv~~v~r~~~s~s~~~rnLa 161 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTE------------RDELLSPAVVRTVQRWRESKSHDERNLA 161 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccch------------hHHhccHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999999999888888887777665433332 4445455667777777777777777788
Q ss_pred HHHHHHhc
Q 043116 442 VKILETYW 449 (482)
Q Consensus 442 ~~~l~~~~ 449 (482)
...++...
T Consensus 162 ~~fl~~~~ 169 (173)
T KOG4646|consen 162 SAFLDKHV 169 (173)
T ss_pred HHHHHhhc
Confidence 77776543
No 91
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=0.0012 Score=64.34 Aligned_cols=302 Identities=14% Similarity=0.094 Sum_probs=164.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCC-hHHHHHHHHHHHHHhCCChHhHH
Q 043116 29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDY-PQLQFEAARALTNIASGTSENTK 107 (482)
Q Consensus 29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~-~~v~~~a~~~L~~l~~~~~~~~~ 107 (482)
+..+.+-|.|.|+..+..|+.++.++.+.+ ..+.+. +-+-++|-++++ +-++..|+-||..+.+.+|+...
T Consensus 113 in~iknDL~srn~~fv~LAL~~I~niG~re---~~ea~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~ 184 (938)
T KOG1077|consen 113 INSIKNDLSSRNPTFVCLALHCIANIGSRE---MAEAFA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN 184 (938)
T ss_pred HHHHHhhhhcCCcHHHHHHHHHHHhhccHh---HHHHhh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccC
Confidence 455556666888888889999999987653 222222 223355555442 56888899999999887766432
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH------------HHHHhC---------C------hHHH
Q 043116 108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRD------------FVLSQG---------A------LIPL 160 (482)
Q Consensus 108 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~------------~~~~~~---------~------i~~l 160 (482)
..+....++.+|.+.+-.+...+...+..++...++... .+...| . .-.+
T Consensus 185 ---~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl 261 (938)
T KOG1077|consen 185 ---PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKL 261 (938)
T ss_pred ---hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHH
Confidence 223456667777665544444444444444433222110 000000 0 0122
Q ss_pred HHHHc---chhhhhHHHHHHHHH---HHhhcCCCC-------------------------CChhhhhhHHHHHHHHhccC
Q 043116 161 LAELN---EHAKLSMLRTATWTL---SNFCRGKPQ-------------------------PPFNQIRPALRVLAQLIRSN 209 (482)
Q Consensus 161 ~~~l~---~~~~~~~~~~a~~~L---~~L~~~~~~-------------------------~~~~~~~~~~~~L~~ll~~~ 209 (482)
+++|. ...|+..+.....++ .|.....|. ........++..|.+++.+.
T Consensus 262 ~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~r 341 (938)
T KOG1077|consen 262 LRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHR 341 (938)
T ss_pred HHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcc
Confidence 33331 112333333322222 222222111 11222345555666666666
Q ss_pred ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhC-CCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHH
Q 043116 210 DEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLG-HRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLG 288 (482)
Q Consensus 210 ~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ 288 (482)
.+.+|.-++..++.++.... ..+.+... .+.++..|+ ..+.++|..|+..|..+|. .+..+ .++..+++
T Consensus 342 E~NiRYLaLEsm~~L~ss~~-s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD--~~Nak-----~IV~elLq 411 (938)
T KOG1077|consen 342 ETNIRYLALESMCKLASSEF-SIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCD--VSNAK-----QIVAELLQ 411 (938)
T ss_pred cccchhhhHHHHHHHHhccc-hHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhc--hhhHH-----HHHHHHHH
Confidence 77777777777777774422 22222222 567777777 6788999999999999885 33333 24566888
Q ss_pred HhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH--------------HcCChHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 043116 289 LLIHNHNKSIKKEVCWIISNITAGNREQIQAVI--------------DAGLIGPIVNLLQDAEFGTKKEAAWVISNATS 353 (482)
Q Consensus 289 ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~--------------~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~ 353 (482)
.|.+. ++.+|++.+.-++-++.........++ +.++...++++.. .+++++..|+..+.....
T Consensus 412 YL~tA-d~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVv-Nnedlq~yaak~~fe~Lq 488 (938)
T KOG1077|consen 412 YLETA-DYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVV-NNEDLQGYAAKRLFEYLQ 488 (938)
T ss_pred HHhhc-chHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEe-cchhhhHHHHHHHHHHHh
Confidence 88888 888998887766666652111011111 1223333333322 356777777776666654
No 92
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.46 E-value=8e-05 Score=70.74 Aligned_cols=241 Identities=17% Similarity=0.068 Sum_probs=156.4
Q ss_pred cHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH
Q 043116 28 ILPTMVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT 106 (482)
Q Consensus 28 ~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 106 (482)
+++.++..+. .+++.+...++..+. ... .. ..+..++..|.+.+ +.++..++..|+.+-.
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~---~~~-~~--------~~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~------ 115 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALL---AQE-DA--------LDLRSVLAVLQAGP-EGLCAGIQAALGWLGG------ 115 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHh---ccC-Ch--------HHHHHHHHHhcCCC-HHHHHHHHHHHhcCCc------
Confidence 3566666664 445655554444432 111 11 13777888888887 7788888888886633
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcC
Q 043116 107 KVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG 186 (482)
Q Consensus 107 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~ 186 (482)
.+..+.|+.++.+.++.++..++.+++.... ...+.+...+ ++.++.++..++.+|..+-..
T Consensus 116 -----~~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 116 -----RQAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAAL-THEDALVRAAALRALGELPRR 177 (410)
T ss_pred -----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc
Confidence 1356778888888888888877777766321 1234666677 577888888888888877653
Q ss_pred CCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHh
Q 043116 187 KPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266 (482)
Q Consensus 187 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 266 (482)
..++.|...+.+.++.++..++.++..+.. +. ....+..+...+.......+..++...
T Consensus 178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~---------A~~~l~~~~~~~g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RL---------AWGVCRRFQVLEGGPHRQRLLVLLAVA 236 (410)
T ss_pred ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh---------HHHHHHHHHhccCccHHHHHHHHHHhC
Confidence 345567777888888888888888876643 21 123444433444443443333333332
Q ss_pred hcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHH
Q 043116 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAW 346 (482)
Q Consensus 267 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~ 346 (482)
..+ ..++.|..+++++ .++..++++++.+- ++. .++.|++.+.+. .++..|..
T Consensus 237 --~~~---------~a~~~L~~ll~d~---~vr~~a~~AlG~lg--~p~---------av~~L~~~l~d~--~~aR~A~e 289 (410)
T TIGR02270 237 --GGP---------DAQAWLRELLQAA---ATRREALRAVGLVG--DVE---------AAPWCLEAMREP--PWARLAGE 289 (410)
T ss_pred --Cch---------hHHHHHHHHhcCh---hhHHHHHHHHHHcC--Ccc---------hHHHHHHHhcCc--HHHHHHHH
Confidence 112 3567788888776 38999999999774 333 677777777643 49999999
Q ss_pred HHHHhhc
Q 043116 347 VISNATS 353 (482)
Q Consensus 347 aL~~l~~ 353 (482)
++..|+-
T Consensus 290 A~~~ItG 296 (410)
T TIGR02270 290 AFSLITG 296 (410)
T ss_pred HHHHhhC
Confidence 9999975
No 93
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.41 E-value=0.00019 Score=68.24 Aligned_cols=244 Identities=17% Similarity=0.050 Sum_probs=166.5
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 043116 70 GVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRD 149 (482)
Q Consensus 70 g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 149 (482)
..++.++..+.....++++..++.++.... .+ ..+..|+..+.+.++.++..+..+|+.+- .+.
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~--~~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~--~~~--- 117 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQE--DA---------LDLRSVLAVLQAGPEGLCAGIQAALGWLG--GRQ--- 117 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhccC--Ch---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCC--chH---
Confidence 457888888854333777776666554331 11 13789999999999999999999999773 222
Q ss_pred HHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCc
Q 043116 150 FVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTN 229 (482)
Q Consensus 150 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~ 229 (482)
..+.|+..+ .+.++.++..++.++.... ....+.+..++++.++.++..++++|+.+...
T Consensus 118 ------a~~~L~~~L-~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-- 177 (410)
T TIGR02270 118 ------AEPWLEPLL-AASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPRR-- 177 (410)
T ss_pred ------HHHHHHHHh-cCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--
Confidence 355677777 6777788877776666521 12356788888899999999999999987743
Q ss_pred HHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHH
Q 043116 230 DKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNI 309 (482)
Q Consensus 230 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl 309 (482)
..++.|...+.+.++.|+..|+..++.+-. +. ....+..+.... .......+..++...
T Consensus 178 ---------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~---------A~~~l~~~~~~~-g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 178 ---------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RL---------AWGVCRRFQVLE-GGPHRQRLLVLLAVA 236 (410)
T ss_pred ---------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh---------HHHHHHHHHhcc-CccHHHHHHHHHHhC
Confidence 234567777899999999999999977643 22 233445434433 333444444444333
Q ss_pred hcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHH
Q 043116 310 TAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLI 389 (482)
Q Consensus 310 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~ 389 (482)
+.+ ..++.|..+++++ .++..++++++.+-. +. .++.|++.+.++. +...+-.
T Consensus 237 --~~~---------~a~~~L~~ll~d~--~vr~~a~~AlG~lg~---p~---------av~~L~~~l~d~~--~aR~A~e 289 (410)
T TIGR02270 237 --GGP---------DAQAWLRELLQAA--ATRREALRAVGLVGD---VE---------AAPWCLEAMREPP--WARLAGE 289 (410)
T ss_pred --Cch---------hHHHHHHHHhcCh--hhHHHHHHHHHHcCC---cc---------hHHHHHHHhcCcH--HHHHHHH
Confidence 223 3667777777754 489999999997754 22 5778888777544 8888999
Q ss_pred HHHHHHHh
Q 043116 390 GLENILKV 397 (482)
Q Consensus 390 ~L~~l~~~ 397 (482)
++.+|.-.
T Consensus 290 A~~~ItG~ 297 (410)
T TIGR02270 290 AFSLITGM 297 (410)
T ss_pred HHHHhhCC
Confidence 99998753
No 94
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=9.3e-06 Score=77.89 Aligned_cols=249 Identities=15% Similarity=0.146 Sum_probs=162.5
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHH---HHHHHhhcCC---CC
Q 043116 116 PIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTAT---WTLSNFCRGK---PQ 189 (482)
Q Consensus 116 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~---~~L~~L~~~~---~~ 189 (482)
..+..+..+.+..++.+|+.++..+.... ...+. .......++ .+.+..++..|+ |.+.|.+-.. ..
T Consensus 201 ~~l~~~~~~~D~~Vrt~A~eglL~L~eg~-kL~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 201 RGLIYLEHDQDFRVRTHAVEGLLALSEGF-KLSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhcccc-cccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 33777778888888888888888887532 22222 233456667 666778887765 4455555211 22
Q ss_pred CChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhC-CCChhhHHHHHHHHhHhh-
Q 043116 190 PPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLG-HRSRLVLTAALRTIGNIV- 267 (482)
Q Consensus 190 ~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~- 267 (482)
........++..+++.+.+-+..++..+..+|+.+-..+.+......+..++..+-..-. +..+. .+..=+..+
T Consensus 274 ~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk----~l~s~GewSs 349 (823)
T KOG2259|consen 274 EEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPK----ALYSSGEWSS 349 (823)
T ss_pred hhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchH----HHHhcCCccc
Confidence 233345788999999999999999999999999988777777666666554443322111 11111 110000000
Q ss_pred ----------cCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC
Q 043116 268 ----------TGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAE 337 (482)
Q Consensus 268 ----------~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 337 (482)
...++....++.+|.--.++.-+++. -.+||..|+..++.++..+|.... ..+..|++++.++.
T Consensus 350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~ 423 (823)
T KOG2259|consen 350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEI 423 (823)
T ss_pred CccccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHH
Confidence 01223345577888888899999988 889999999999999986666332 25778899999999
Q ss_pred hhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHH
Q 043116 338 FGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCL 388 (482)
Q Consensus 338 ~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l 388 (482)
..+|..|+.+|..++.+.. +++..++.+...+.+.+++++...-
T Consensus 424 ~~VRL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D~s~dvRe~l~ 467 (823)
T KOG2259|consen 424 EVVRLKAIFALTMISVHLA-------IREEQLRQILESLEDRSVDVREALR 467 (823)
T ss_pred HHHHHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999887431 1222355555555555555554433
No 95
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.40 E-value=0.00016 Score=73.19 Aligned_cols=385 Identities=15% Similarity=0.098 Sum_probs=243.0
Q ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHH
Q 043116 30 PTMVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKV 108 (482)
Q Consensus 30 ~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 108 (482)
-.++..+. .+-.+.+..+...+......... ..+....-+..-++.++.+ +.++..++.-+++++..-+...
T Consensus 200 v~l~~~l~~~d~~~sr~sacglf~~~~~~~~~----~~vk~elr~~~~~lc~d~~-~~Vr~~~a~~l~~~a~~~~~~~-- 272 (759)
T KOG0211|consen 200 VPLLKRLATGDWFQSRLSACGLFGKLYVSLPD----DAVKRELRPIVQSLCQDDT-PMVRRAVASNLGNIAKVLESEI-- 272 (759)
T ss_pred HHHHHHccchhhhhcchhhhhhhHHhccCCCh----HHHHHHHHHHHHhhccccc-hhhHHHHHhhhHHHHHHHHHHH--
Confidence 33444444 44466777788888888777521 3345556777778888888 9999999999999988544432
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC--CCh-hhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHH------
Q 043116 109 AIDHGAVPIFVKLLASPSDDVREQAVWALGNVAG--DSS-RCRDFVLSQGALIPLLAELNEHAKLSMLRTATWT------ 179 (482)
Q Consensus 109 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~--~~~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~------ 179 (482)
...++++.+..+..+....+|..|...+.++.. ..+ .... .+.+.+++.. .+.+..+.......
T Consensus 273 -~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~-----~~~~~l~~~~-~d~~~~v~~~~~~~~~~L~~ 345 (759)
T KOG0211|consen 273 -VKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVK-----SLTESLVQAV-EDGSWRVSYMVADKFSELSS 345 (759)
T ss_pred -HHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhh-----hhhHHHHHHh-cChhHHHHHHHhhhhhhHHH
Confidence 345789999999999999999999988887762 222 1111 1333444444 22222222111111
Q ss_pred ---------------------------------HHHhhcCCC--CCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHh
Q 043116 180 ---------------------------------LSNFCRGKP--QPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYL 224 (482)
Q Consensus 180 ---------------------------------L~~L~~~~~--~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l 224 (482)
...++...+ .........++|.+..+..+.+..++...+.....+
T Consensus 346 ~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~ 425 (759)
T KOG0211|consen 346 AVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGL 425 (759)
T ss_pred HhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhcccccc
Confidence 111111110 001112234456666666677777777766666665
Q ss_pred ccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHH
Q 043116 225 ADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCW 304 (482)
Q Consensus 225 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~ 304 (482)
..-.+.. .. -....+.+...+++..+.++.+..+.+..+-..++..-........++.+..+-... ..+++.+..+
T Consensus 426 ~p~~~k~--~t-i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~ 501 (759)
T KOG0211|consen 426 SPILPKE--RT-ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILE 501 (759)
T ss_pred CccCCcC--cC-ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHH
Confidence 5322200 00 013567777788888999999998877766654544434455557788888888877 7889999888
Q ss_pred HHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHH
Q 043116 305 IISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIV 384 (482)
Q Consensus 305 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 384 (482)
.+-.++.... ..+++...-+.+...+.+....+++.|+..+..++..-... + .....++.+..+..+++...+
T Consensus 502 ~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~---w-~~~~~i~k~L~~~~q~~y~~R 574 (759)
T KOG0211|consen 502 YIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSE---W-ARLEEIPKLLAMDLQDNYLVR 574 (759)
T ss_pred HHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcc---h-hHHHhhHHHHHHhcCcccchh
Confidence 8888876322 23333334444555556667789999999888887532211 1 122357777777777788888
Q ss_pred HHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 043116 385 TVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGRVV 454 (482)
Q Consensus 385 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 454 (482)
...+.++..+....... .+++ ..++.+.++..++.+.|+-.+.+.+..+......
T Consensus 575 ~t~l~si~~la~v~g~e----------i~~~-----~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~ 629 (759)
T KOG0211|consen 575 MTTLFSIHELAEVLGQE----------ITCE-----DLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE 629 (759)
T ss_pred hHHHHHHHHHHHHhccH----------HHHH-----HHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch
Confidence 88888888777654332 1233 3478888999999999999999999887766544
No 96
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.40 E-value=0.0011 Score=64.15 Aligned_cols=348 Identities=14% Similarity=0.121 Sum_probs=201.0
Q ss_pred HHHHHHHhcCCCH---HHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh
Q 043116 29 LPTMVAGVWSDDN---KVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN 105 (482)
Q Consensus 29 i~~l~~~l~s~~~---~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~ 105 (482)
+|.++..|...++ ......+.+|..++... .-.+. +...++..+-...+.+.+.+....++.++.++.....+.
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~--~i~~~-~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~ 77 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTSP--QILET-LSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQED 77 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCCh--hHHHH-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccc
Confidence 4778888875543 55677899999998763 22222 222555666555554444677777788888776533222
Q ss_pred H-----HHHHhCCChHHHHHhhCC-----C--CHHHHHHHHHHHHHhhCCChh-hHHHHHHhCChHHHHHHHc-------
Q 043116 106 T-----KVAIDHGAVPIFVKLLAS-----P--SDDVREQAVWALGNVAGDSSR-CRDFVLSQGALIPLLAELN------- 165 (482)
Q Consensus 106 ~-----~~~~~~g~i~~L~~ll~~-----~--~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~l~~~l~------- 165 (482)
. ....+..+++.+.+.... . ++.+...+...+..++..-+. -++.+ +..+.....
T Consensus 78 ~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~-----~~~~~~lf~~~~~~~~ 152 (415)
T PF12460_consen 78 KQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEI-----LDELYSLFLSPKSFSP 152 (415)
T ss_pred cccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHH-----HHHHHHHHccccccCC
Confidence 2 333344477777775532 1 245555566666666543332 22222 223333332
Q ss_pred ---chh-hhhHHHHHHHHH-HHhhcCCCCCChhhhhhHHHHHHHHhc-cCChhHHHHHHHHHHHhccCC--cHHHHHHHH
Q 043116 166 ---EHA-KLSMLRTATWTL-SNFCRGKPQPPFNQIRPALRVLAQLIR-SNDEKVLTDACRALAYLADGT--NDKIQAVIE 237 (482)
Q Consensus 166 ---~~~-~~~~~~~a~~~L-~~L~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~~~~~~l~~L~~l~~~~--~~~~~~~~~ 237 (482)
... ...........+ .-++.-++..........+..++.+.. ..++..+..++.+++.++-.- ++..+
T Consensus 153 ~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~---- 228 (415)
T PF12460_consen 153 FQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD---- 228 (415)
T ss_pred CCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH----
Confidence 000 001112222222 222222333333344567777777754 456888899999999888442 22111
Q ss_pred hCcHHHHHHhh-CCCChhhHHHHHHHHhHhh----cCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 043116 238 AGVCPRLVKLL-GHRSRLVLTAALRTIGNIV----TGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAG 312 (482)
Q Consensus 238 ~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~----~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 312 (482)
+++..+.... ....+..+..++.++..++ ........ .++..++.++.+ +++...++..+.-+...
T Consensus 229 -~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~---~~~g~~aA~~f~il~~d 299 (415)
T PF12460_consen 229 -EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSS---PELGQQAAKAFGILLSD 299 (415)
T ss_pred -HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCC---hhhHHHHHHHHhhHhcC
Confidence 2333444333 3334444445544444333 22222222 256678888876 46778888888888765
Q ss_pred CHH--------HHHHHHHcC----ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCC
Q 043116 313 NRE--------QIQAVIDAG----LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPD 380 (482)
Q Consensus 313 ~~~--------~~~~l~~~~----~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~ 380 (482)
.++ .++.+.+.. ++|.|++-....+.+.+.....||.++..+-+...... .-...++.|++-++.+|
T Consensus 300 ~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~-~l~~LlPLLlqsL~~~~ 378 (415)
T PF12460_consen 300 SDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLP-ELPTLLPLLLQSLSLPD 378 (415)
T ss_pred cHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHHHHHhCCCC
Confidence 233 233344333 57777777777777789999999999998755433222 22358999999999999
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 043116 381 PQIVTVCLIGLENILKVG 398 (482)
Q Consensus 381 ~~v~~~~l~~L~~l~~~~ 398 (482)
++++..++.+|..+++..
T Consensus 379 ~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 379 ADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 999999999999999754
No 97
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=0.00037 Score=73.51 Aligned_cols=316 Identities=15% Similarity=0.121 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHH
Q 043116 41 NKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVK 120 (482)
Q Consensus 41 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 120 (482)
..-+.-|+.-+..++... .+..+ -.-..++|.|.++=-+++ +.+|.....+...+..++....+...+ .++.-|+.
T Consensus 971 wnSk~GaAfGf~~i~~~a-~~kl~-p~l~kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~ 1046 (1702)
T KOG0915|consen 971 WNSKKGAAFGFGAIAKQA-GEKLE-PYLKKLIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLV 1046 (1702)
T ss_pred hhcccchhhchHHHHHHH-HHhhh-hHHHHhhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHH
Confidence 344445555555555543 11111 112336777777766788 889988888888888766666666654 57788888
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCCChhh--HHHHHHhCChHHHHHHHcchhhhhHHHH---HHHHHHHhhcCC-C----CC
Q 043116 121 LLASPSDDVREQAVWALGNVAGDSSRC--RDFVLSQGALIPLLAELNEHAKLSMLRT---ATWTLSNFCRGK-P----QP 190 (482)
Q Consensus 121 ll~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~~i~~l~~~l~~~~~~~~~~~---a~~~L~~L~~~~-~----~~ 190 (482)
-+.+....+|+.++-+|..+..+.+.- .+.+. .....+++.+ ++-.+.++.. ++.+++.+|-.. . ..
T Consensus 1047 ~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~ 1123 (1702)
T KOG0915|consen 1047 NLTSKEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAK 1123 (1702)
T ss_pred hccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCccc
Confidence 888888999999999999999776542 22222 2455556666 4545556554 566666666433 1 12
Q ss_pred ChhhhhhHHHHHHHH-hccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhH-----------HH
Q 043116 191 PFNQIRPALRVLAQL-IRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVL-----------TA 258 (482)
Q Consensus 191 ~~~~~~~~~~~L~~l-l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~-----------~~ 258 (482)
.......++|.|+.- +-+.-++++.-++..+..++......... .-...++.|+...+.-++.+. .+
T Consensus 1124 ~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP-~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~e 1202 (1702)
T KOG0915|consen 1124 GKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKP-HFPKLIPLLLNAYSELEPQVLNYLSLRLINIETE 1202 (1702)
T ss_pred HHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcc-hhhHHHHHHHHHccccchHHHHHHHHhhhhhHHH
Confidence 222335556655531 22556899999999999999776543221 112455555555554444332 22
Q ss_pred HHHHHh-HhhcCChh--hHHHHH-------hcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Q 043116 259 ALRTIG-NIVTGDDF--QTQCII-------NCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGP 328 (482)
Q Consensus 259 a~~~L~-~l~~~~~~--~~~~l~-------~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~ 328 (482)
++-.+. +.+.+.|. .....+ -..++|.+.++++++-.-..|..++..++-++......+..+.. ..+..
T Consensus 1203 alDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sg-Kll~a 1281 (1702)
T KOG0915|consen 1203 ALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSG-KLLRA 1281 (1702)
T ss_pred HHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchh-HHHHH
Confidence 222222 11222221 111111 11467778888877655566777777777776421111111111 24556
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 043116 329 IVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVR 365 (482)
Q Consensus 329 L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~ 365 (482)
++..+++.++.+++..+.|.+.++....+++.+.+++
T Consensus 1282 l~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie 1318 (1702)
T KOG0915|consen 1282 LFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIE 1318 (1702)
T ss_pred HhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 6666678899999999999999999888888777554
No 98
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.0024 Score=62.38 Aligned_cols=346 Identities=17% Similarity=0.130 Sum_probs=189.2
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCC--HHHHHHHHHHHHHhhCCChhhHHHHHH
Q 043116 76 VEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPS--DDVREQAVWALGNVAGDSSRCRDFVLS 153 (482)
Q Consensus 76 ~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~ 153 (482)
.+=|.+.+ +.-...|+.+++|+.. .+.+..+. +-+-++|-+++ +-++..|+-+|..+.+..|.. +-.
T Consensus 117 knDL~srn-~~fv~LAL~~I~niG~--re~~ea~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl---~~~ 185 (938)
T KOG1077|consen 117 KNDLSSRN-PTFVCLALHCIANIGS--REMAEAFA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL---VNP 185 (938)
T ss_pred HhhhhcCC-cHHHHHHHHHHHhhcc--HhHHHHhh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc---cCh
Confidence 33344555 6677788888888854 55555443 22335555433 567888888888888666543 222
Q ss_pred hCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc-------------cCChhHHHHHHHH
Q 043116 154 QGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR-------------SNDEKVLTDACRA 220 (482)
Q Consensus 154 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~-------------~~~~~~~~~~l~~ 220 (482)
.+....++.+| ++.+..+.-.+...+..|+...|..-.......+..|..+.. -+.|-.+..+++.
T Consensus 186 ~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rl 264 (938)
T KOG1077|consen 186 GEWAQRIVHLL-DDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRL 264 (938)
T ss_pred hhHHHHHHHHh-CccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHH
Confidence 24566777777 555566666677777777766543332222222222222221 1356677778888
Q ss_pred HHHhccCCcHHHHHHHHhCcHHHHHHhhCCC----Ch---hhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCC
Q 043116 221 LAYLADGTNDKIQAVIEAGVCPRLVKLLGHR----SR---LVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHN 293 (482)
Q Consensus 221 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~----~~---~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~ 293 (482)
|.+.-...+..... .-..+++.++...+.+ +. ..+...+.-.-+++.+-+..-..+. ..+..|-++|.+.
T Consensus 265 Lq~~p~~~D~~~r~-~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~r 341 (938)
T KOG1077|consen 265 LQIYPTPEDPSTRA-RLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHR 341 (938)
T ss_pred HHhCCCCCCchHHH-HHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcc
Confidence 87775332221111 1112334444333311 11 1222233333344433332222222 3567788889888
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHH
Q 043116 294 HNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ-DAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPL 372 (482)
Q Consensus 294 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L 372 (482)
...+|.-|...++.++...+. ...++.. .+.++..|+ +.|..+++.|+..|..++.. ++++. ++.-+
T Consensus 342 -E~NiRYLaLEsm~~L~ss~~s--~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~---~Nak~-----IV~el 409 (938)
T KOG1077|consen 342 -ETNIRYLALESMCKLASSEFS--IDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDV---SNAKQ-----IVAEL 409 (938)
T ss_pred -cccchhhhHHHHHHHHhccch--HHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhch---hhHHH-----HHHHH
Confidence 888999999999999874222 2223322 667777777 78999999999999999864 44444 45667
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhc---hHHHHHHhh--cCCCHHHHHHHHHHHHH
Q 043116 373 CDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAE---GLEKIENLQ--SHDNNDIHEMSVKILET 447 (482)
Q Consensus 373 ~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~l~~l~--~~~~~~v~~~a~~~l~~ 447 (482)
++.+.+.++.+++-..--..-+. ++... +..+.++...+.++-.| .-+.+..+. -..+++++..|.+-+-.
T Consensus 410 LqYL~tAd~sireeivlKvAILa---EKyAt-Dy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNnedlq~yaak~~fe 485 (938)
T KOG1077|consen 410 LQYLETADYSIREEIVLKVAILA---EKYAT-DYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNNEDLQGYAAKRLFE 485 (938)
T ss_pred HHHHhhcchHHHHHHHHHHHHHH---HHhcC-CcchhHHHHHHHHHHhcccccHHHHHHhheeEecchhhhHHHHHHHHH
Confidence 77777788776664332222222 22111 00122333333333322 112222221 23467888777776666
Q ss_pred hcCCC
Q 043116 448 YWCGR 452 (482)
Q Consensus 448 ~~~~~ 452 (482)
|....
T Consensus 486 ~Lq~~ 490 (938)
T KOG1077|consen 486 YLQKP 490 (938)
T ss_pred HHhhh
Confidence 65544
No 99
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=0.0001 Score=70.94 Aligned_cols=222 Identities=12% Similarity=0.125 Sum_probs=148.5
Q ss_pred HHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCC-----cHHHHH
Q 043116 160 LLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGT-----NDKIQA 234 (482)
Q Consensus 160 l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~-----~~~~~~ 234 (482)
+..+. .+.|..++..|+..+..|.... ..-..+....++++.+.+..++..|+..+.-..... .+..+.
T Consensus 203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 55555 7778888888888888777632 222456667788999999999999877766544222 111111
Q ss_pred HHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc---
Q 043116 235 VIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA--- 311 (482)
Q Consensus 235 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~--- 311 (482)
-.....+..+...+.+.+..||..|...|+.+-.-+++.....++..++..+-..=...+.+ .+.+.=+..++
T Consensus 277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrp----k~l~s~GewSsGk~ 352 (823)
T KOG2259|consen 277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRP----KALYSSGEWSSGKE 352 (823)
T ss_pred hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccch----HHHHhcCCcccCcc
Confidence 12225678889999999999999999999988765666555555544444222111111011 11111111111
Q ss_pred --------CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHH
Q 043116 312 --------GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQI 383 (482)
Q Consensus 312 --------~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v 383 (482)
...+.-..++..|.-..++.-+.++-.+||.+|...++.++.. .|.+... .++.|++++.++...|
T Consensus 353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s-sP~FA~~-----aldfLvDMfNDE~~~V 426 (823)
T KOG2259|consen 353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS-SPGFAVR-----ALDFLVDMFNDEIEVV 426 (823)
T ss_pred ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC-CCCcHHH-----HHHHHHHHhccHHHHH
Confidence 1122234577788888888888888899999999999999985 4444333 7899999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 043116 384 VTVCLIGLENILKV 397 (482)
Q Consensus 384 ~~~~l~~L~~l~~~ 397 (482)
+.+++.+|..+...
T Consensus 427 RL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 427 RLKAIFALTMISVH 440 (823)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999865
No 100
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.35 E-value=0.00016 Score=67.91 Aligned_cols=240 Identities=14% Similarity=0.134 Sum_probs=173.2
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC--ChhhHHHHHHHHhHhhcCChhh
Q 043116 196 RPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR--SRLVLTAALRTIGNIVTGDDFQ 273 (482)
Q Consensus 196 ~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~ 273 (482)
....+.+..++-+++.+++..+.++++.+.... ...+.+.+.++--.++..|..+ +..-|..|++.+..+.......
T Consensus 24 ~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~-~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~ 102 (371)
T PF14664_consen 24 SFFGERIQCMLLSDSKEVRAAGYRILRYLISDE-ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP 102 (371)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc
Confidence 445555555555556999999999999998654 4566677777656666666443 4457889999999888753221
Q ss_pred HHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 043116 274 TQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATS 353 (482)
Q Consensus 274 ~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~ 353 (482)
+ .+..+++..++.+.++. +...+..+..+|+.++-.+|+ .+...|++..|++.+.++..++....+.++..+..
T Consensus 103 -~-~~~~~vvralvaiae~~-~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd 176 (371)
T PF14664_consen 103 -K-EIPRGVVRALVAIAEHE-DDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD 176 (371)
T ss_pred -c-cCCHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC
Confidence 1 23457899999999998 888999999999999987777 55688999999999998877788899999999987
Q ss_pred CCCHHHHHHHHHcCChHHHHhcCCCC-------CH--HHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHH
Q 043116 354 GGTHEQIKHLVREGCVKPLCDLLPCP-------DP--QIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLE 424 (482)
Q Consensus 354 ~~~~~~~~~l~~~~~l~~L~~ll~~~-------~~--~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 424 (482)
+|..++++...--++.+..-+.+. +. +-...+..++..+++..+..-.. ......+++
T Consensus 177 --~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l-----------~~~~~~~lk 243 (371)
T PF14664_consen 177 --SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYL-----------SMNDFRGLK 243 (371)
T ss_pred --CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeee-----------ecCCchHHH
Confidence 566666655543455555544322 22 35566778888888765443211 112224667
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 043116 425 KIENLQSHDNNDIHEMSVKILETYWCGRVVG 455 (482)
Q Consensus 425 ~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 455 (482)
.|.+.+..+++++++....++-..|.-...+
T Consensus 244 sLv~~L~~p~~~ir~~Ildll~dllrik~p~ 274 (371)
T PF14664_consen 244 SLVDSLRLPNPEIRKAILDLLFDLLRIKPPS 274 (371)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHCCCCCC
Confidence 7777888999999999999999988866553
No 101
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.35 E-value=0.00024 Score=68.95 Aligned_cols=264 Identities=16% Similarity=0.121 Sum_probs=171.0
Q ss_pred HHHHHHhcCCCCCcHHHHHhcCCHHHHHHhh---------cCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHH
Q 043116 49 TLFRKMLSFDRNSPIEKVIQSGVVPRFVEFL---------MREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFV 119 (482)
Q Consensus 49 ~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll---------~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 119 (482)
..|.-++.. ......+.....+..|.++- ....++++...|++||+|+.-.++..|+.+.+.|+.+.++
T Consensus 3 ~~LRiLsRd--~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 3 ETLRILSRD--PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHccC--cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 344444443 33455566555666666655 2233379999999999999999999999999999999999
Q ss_pred HhhCCC-----CHHHHHHHHHHHHHhhCCChhhHHHHHHh-CChHHHHHHHcch----------------hhhhHHHHHH
Q 043116 120 KLLASP-----SDDVREQAVWALGNVAGDSSRCRDFVLSQ-GALIPLLAELNEH----------------AKLSMLRTAT 177 (482)
Q Consensus 120 ~ll~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~l~~~l~~~----------------~~~~~~~~a~ 177 (482)
+.++.. +.++.....+.|.-++...+..+..+.+. +++..+...+..+ .+......++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999875 67888888888888887666666555544 6777776666321 1345567788
Q ss_pred HHHHHhhcCCCCCChh----hhhhHHHHHHHHh---cc--CChhHHHHHHHHHHHhccCCcHH-------HH----HHHH
Q 043116 178 WTLSNFCRGKPQPPFN----QIRPALRVLAQLI---RS--NDEKVLTDACRALAYLADGTNDK-------IQ----AVIE 237 (482)
Q Consensus 178 ~~L~~L~~~~~~~~~~----~~~~~~~~L~~ll---~~--~~~~~~~~~l~~L~~l~~~~~~~-------~~----~~~~ 237 (482)
.++.|++...+..... ....++..+..++ .. +......+++.+|.++--..... .. ...+
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 9999998876544332 2344555555552 11 22456778888888773211110 00 0011
Q ss_pred hCcHHHHHHhhCC-----C---ChhhHHHHHHHHhHhhcCChhhHHHHH----------------hcCchHHHHHHhcCC
Q 043116 238 AGVCPRLVKLLGH-----R---SRLVLTAALRTIGNIVTGDDFQTQCII----------------NCGALRYLLGLLIHN 293 (482)
Q Consensus 238 ~~~l~~L~~ll~~-----~---~~~v~~~a~~~L~~l~~~~~~~~~~l~----------------~~~~i~~L~~ll~~~ 293 (482)
...+..++.+|.. . -.......+.+|.+++..+...++.+. ...+-..|+.++.+.
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~ 320 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP 320 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence 2345555555522 1 124566678888888876654444332 124567799999999
Q ss_pred CchhHHHHHHHHHHHHhcCCHH
Q 043116 294 HNKSIKKEVCWIISNITAGNRE 315 (482)
Q Consensus 294 ~~~~v~~~a~~~L~nl~~~~~~ 315 (482)
.+.+|..++..+-.+|..+..
T Consensus 321 -~~~~k~~vaellf~Lc~~d~~ 341 (446)
T PF10165_consen 321 -DPQLKDAVAELLFVLCKEDAS 341 (446)
T ss_pred -CchHHHHHHHHHHHHHhhhHH
Confidence 699999999999888865444
No 102
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.32 E-value=1e-05 Score=61.54 Aligned_cols=114 Identities=16% Similarity=0.120 Sum_probs=96.8
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 043116 71 VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDF 150 (482)
Q Consensus 71 ~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 150 (482)
.+..|+.-.+...+.+.+++...-|+|.+. +|.+-..+.+.+++..++..+..++..+.+.++..|+|+|-+. ...+.
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~-~n~~~ 94 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDK-TNAKF 94 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccCh-HHHHH
Confidence 455566555554448999999999999988 7888899999999999999999999999999999999999664 45788
Q ss_pred HHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC
Q 043116 151 VLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK 187 (482)
Q Consensus 151 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~ 187 (482)
+.+.++++.++..+ .++...+...++.++..|+...
T Consensus 95 I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~ 130 (173)
T KOG4646|consen 95 IREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGE 130 (173)
T ss_pred HHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcc
Confidence 89999999999999 6667778888899999998875
No 103
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.32 E-value=5.7e-05 Score=66.32 Aligned_cols=230 Identities=16% Similarity=0.181 Sum_probs=155.4
Q ss_pred hhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCC-ChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHH-H
Q 043116 78 FLMREDYPQLQFEAARALTNIASGTSENTKVAIDHG-AVPIFVKLLAS--PSDDVREQAVWALGNVAGDSSRCRDFVL-S 153 (482)
Q Consensus 78 ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g-~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~ 153 (482)
+++.-+ +-.+.-|+.|+.++.. .++.|......+ .-..+.+.+++ ++..++.+.+.+++.++... .+.+.+- .
T Consensus 157 l~Q~i~-~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~-~~aqdi~K~ 233 (432)
T COG5231 157 LSQLID-FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSK-ECAQDIDKM 233 (432)
T ss_pred HHHHHH-HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCH-HHHHHHHHH
Confidence 334444 5678889999999987 678887666443 45677777775 56788999999999998554 3432222 2
Q ss_pred hCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChh--hhhh-HHHHHHHHhc--cCChhHHHHHHHHHHHhccC-
Q 043116 154 QGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFN--QIRP-ALRVLAQLIR--SNDEKVLTDACRALAYLADG- 227 (482)
Q Consensus 154 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~--~~~~-~~~~L~~ll~--~~~~~~~~~~l~~L~~l~~~- 227 (482)
...+..++.+++....+.+.+-++.++.|++...|..... ...+ +.+++-.++. -.|++++...-+.=..+...
T Consensus 234 ~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~ 313 (432)
T COG5231 234 DDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNT 313 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhh
Confidence 2357777888877778889999999999999955332222 2233 3433333333 23444444432222211111
Q ss_pred --------------------Cc---------HHHHHHHHh--CcHHHHHHhhCCCChh-hHHHHHHHHhHhhcCChhhHH
Q 043116 228 --------------------TN---------DKIQAVIEA--GVCPRLVKLLGHRSRL-VLTAALRTIGNIVTGDDFQTQ 275 (482)
Q Consensus 228 --------------------~~---------~~~~~~~~~--~~l~~L~~ll~~~~~~-v~~~a~~~L~~l~~~~~~~~~ 275 (482)
++ .+...+.+. .++..|..+++..++. ...-||.=+..+.+..|+...
T Consensus 314 k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~ 393 (432)
T COG5231 314 KKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINA 393 (432)
T ss_pred hhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHH
Confidence 00 112222222 5788888999887766 666789999999998899888
Q ss_pred HHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 043116 276 CIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA 311 (482)
Q Consensus 276 ~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 311 (482)
.+.+.|+=+.++.+++++ +++||-+|..++..++.
T Consensus 394 vl~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 394 VLSKYGVKEIIMNLINHD-DDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHHh
Confidence 888899999999999999 99999999999887764
No 104
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.32 E-value=0.00035 Score=65.85 Aligned_cols=250 Identities=28% Similarity=0.322 Sum_probs=172.3
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH
Q 043116 27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT 106 (482)
Q Consensus 27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 106 (482)
..++.+++.+.++++.++..+++.+..+.... .++.+..++.+.+ +.+|..|+.+|+.+-. +
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~------------av~~l~~~l~d~~-~~vr~~a~~aLg~~~~--~--- 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSEE------------AVPLLRELLSDED-PRVRDAAADALGELGD--P--- 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchHH------------HHHHHHHHhcCCC-HHHHHHHHHHHHccCC--h---
Confidence 57889999999889999999999976665432 6899999999999 8999999999888843 2
Q ss_pred HHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhh-----------hhHHH
Q 043116 107 KVAIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAK-----------LSMLR 174 (482)
Q Consensus 107 ~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~-----------~~~~~ 174 (482)
..++.++.++. +++..+|..|.++|+.+-.. . .+..++..+.+... ..++.
T Consensus 105 ------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~--~---------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~ 167 (335)
T COG1413 105 ------EAVPPLVELLENDENEGVRAAAARALGKLGDE--R---------ALDPLLEALQDEDSGSAAAALDAALLDVRA 167 (335)
T ss_pred ------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch--h---------hhHHHHHHhccchhhhhhhhccchHHHHHH
Confidence 35788899888 69999999999999998422 1 25567777733221 12333
Q ss_pred HHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChh
Q 043116 175 TATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRL 254 (482)
Q Consensus 175 ~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 254 (482)
.+...+..+-. ....+.+..++.+.+..++..+..+|+.+.... ..+...+...+.+++..
T Consensus 168 ~a~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~ 228 (335)
T COG1413 168 AAAEALGELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLE 228 (335)
T ss_pred HHHHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHH
Confidence 34444443322 346677888888888889999999888887554 23446788888888888
Q ss_pred hHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 043116 255 VLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ 334 (482)
Q Consensus 255 v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~ 334 (482)
++..++..++.+-. .. ..+.+...+... +..++..+...+... ... .....+...+.
T Consensus 229 vr~~~~~~l~~~~~--~~---------~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~~---------~~~~~l~~~~~ 285 (335)
T COG1413 229 VRKAALLALGEIGD--EE---------AVDALAKALEDE-DVILALLAAAALGAL--DLA---------EAALPLLLLLI 285 (335)
T ss_pred HHHHHHHHhcccCc--ch---------hHHHHHHHHhcc-chHHHHHHHHHhccc--Cch---------hhHHHHHHHhh
Confidence 99888888876643 11 344566777776 666665555554411 111 12334444555
Q ss_pred cCChhHHHHHHHHHHHhhc
Q 043116 335 DAEFGTKKEAAWVISNATS 353 (482)
Q Consensus 335 ~~~~~~~~~a~~aL~~l~~ 353 (482)
+....++..+..++..+..
T Consensus 286 ~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 286 DEANAVRLEAALALGQIGQ 304 (335)
T ss_pred cchhhHHHHHHHHHHhhcc
Confidence 6666777777777776655
No 105
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.25 E-value=0.00041 Score=65.38 Aligned_cols=249 Identities=24% Similarity=0.292 Sum_probs=174.2
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 043116 70 GVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRD 149 (482)
Q Consensus 70 g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 149 (482)
..++.+.+++.+++ ..++..+++.++.+.. ...++.+..++.+.++.+|..|+.+|+.+ ..+.
T Consensus 43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~--~~~~--- 105 (335)
T COG1413 43 EAADELLKLLEDED-LLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGEL--GDPE--- 105 (335)
T ss_pred hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHcc--CChh---
Confidence 36888999999997 8999999999777643 13689999999999999999999999888 3332
Q ss_pred HHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCCh------------hHHHHH
Q 043116 150 FVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDE------------KVLTDA 217 (482)
Q Consensus 150 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~------------~~~~~~ 217 (482)
.++.++..+..+.+..++..+.++|..+-... .+..++..+.+... .++..+
T Consensus 106 ------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 106 ------AVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred ------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 47788888855788889999999999876642 35566666665542 344445
Q ss_pred HHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchh
Q 043116 218 CRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKS 297 (482)
Q Consensus 218 l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~ 297 (482)
...+..+.. ...++.+...+.+.+..++..+...|+.+...+ ..+.+.+...+.+. +..
T Consensus 170 ~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~ 228 (335)
T COG1413 170 AEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE 228 (335)
T ss_pred HHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence 555444432 134577888888888889999999998887644 23456778888888 888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCC
Q 043116 298 IKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP 377 (482)
Q Consensus 298 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~ 377 (482)
+|..++.+++.+-. .. .+..+...+.+.+..++..+..++...- .. .....+...+.
T Consensus 229 vr~~~~~~l~~~~~--~~---------~~~~l~~~l~~~~~~~~~~~~~~~~~~~---~~---------~~~~~l~~~~~ 285 (335)
T COG1413 229 VRKAALLALGEIGD--EE---------AVDALAKALEDEDVILALLAAAALGALD---LA---------EAALPLLLLLI 285 (335)
T ss_pred HHHHHHHHhcccCc--ch---------hHHHHHHHHhccchHHHHHHHHHhcccC---ch---------hhHHHHHHHhh
Confidence 99998888887743 22 4555666677777776666655555111 11 12344555566
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 043116 378 CPDPQIVTVCLIGLENIL 395 (482)
Q Consensus 378 ~~~~~v~~~~l~~L~~l~ 395 (482)
+.+..++......+..+-
T Consensus 286 ~~~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 286 DEANAVRLEAALALGQIG 303 (335)
T ss_pred cchhhHHHHHHHHHHhhc
Confidence 666666666666665554
No 106
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.24 E-value=2.6e-06 Score=52.04 Aligned_cols=40 Identities=45% Similarity=0.875 Sum_probs=38.0
Q ss_pred ChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 043116 102 TSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVA 141 (482)
Q Consensus 102 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 141 (482)
++++++.+++.|+++.|+++++++++++++.|+|+|+|++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4788999999999999999999999999999999999997
No 107
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.23 E-value=0.0002 Score=62.99 Aligned_cols=239 Identities=16% Similarity=0.167 Sum_probs=142.9
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCC--CChhhHHHHHHHHhHhhcCChhhHHHH
Q 043116 200 RVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH--RSRLVLTAALRTIGNIVTGDDFQTQCI 277 (482)
Q Consensus 200 ~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l 277 (482)
..|-.+++.-++-.+.-|.+|+.++......+.-...+...-.+++.++++ +...++..++.+++-+.. ++...+.+
T Consensus 152 eyLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi 230 (432)
T COG5231 152 EYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDI 230 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHH
Confidence 344455555566678888899998885443332223333455677777765 456789999999998876 44433222
Q ss_pred Hh-cCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCC-HHHHHHHHHcCChHHHHHHHhc---CChhHHHHHHHHHHHhh
Q 043116 278 IN-CGALRYLLGLLIHNHNKSIKKEVCWIISNITAGN-REQIQAVIDAGLIGPIVNLLQD---AEFGTKKEAAWVISNAT 352 (482)
Q Consensus 278 ~~-~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~~L~~ll~~---~~~~~~~~a~~aL~~l~ 352 (482)
-+ ...+..++++.+..-...|-+-++.++.|++... ...+..+.-.|-+.+-++.|.. .|.+++...-..=..+.
T Consensus 231 ~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~ 310 (432)
T COG5231 231 DKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLV 310 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 11 2567777888877656778889999999999833 3444444444444444555542 35554433222211111
Q ss_pred cCC---------------------C--------HHHHHHHHHc--CChHHHHhcCCCCCHH-HHHHHHHHHHHHHHhchh
Q 043116 353 SGG---------------------T--------HEQIKHLVRE--GCVKPLCDLLPCPDPQ-IVTVCLIGLENILKVGEA 400 (482)
Q Consensus 353 ~~~---------------------~--------~~~~~~l~~~--~~l~~L~~ll~~~~~~-v~~~~l~~L~~l~~~~~~ 400 (482)
... + ..+...+.+. ..+..|..+++..++. ....|+.-+..+.+..+
T Consensus 311 ~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~P- 389 (432)
T COG5231 311 QNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASP- 389 (432)
T ss_pred hhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCc-
Confidence 110 0 1112222222 2355566666655544 23334444444444322
Q ss_pred ccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043116 401 EKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCG 451 (482)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 451 (482)
+....+...|+-+.|-+|++|++++|+-.|.+.++.+...
T Consensus 390 -----------E~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 390 -----------EINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS 429 (432)
T ss_pred -----------hHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence 2477788999999999999999999999999998877654
No 108
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.23 E-value=0.00021 Score=73.51 Aligned_cols=271 Identities=17% Similarity=0.184 Sum_probs=173.9
Q ss_pred cHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCC---h
Q 043116 28 ILPTMVAGVWS-DDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGT---S 103 (482)
Q Consensus 28 ~i~~l~~~l~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~---~ 103 (482)
.++.+..++++ .....+..|+..|..++..-. .+..-..++|.++.++.++. .+||..|+.+|..+...- +
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~----de~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~ 497 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYID----DEVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIP 497 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcc----hHHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCC
Confidence 46677777764 347788999999999987642 22333458999999999999 899999999988876521 1
Q ss_pred HhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhh---HHHHHHhC------------------------
Q 043116 104 ENTKVAIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSSRC---RDFVLSQG------------------------ 155 (482)
Q Consensus 104 ~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~------------------------ 155 (482)
..-..+...=++|.|-.++.+ ....+|..-+.+|+.++...-.+ ...+...|
T Consensus 498 ~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~ 577 (1431)
T KOG1240|consen 498 PSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH 577 (1431)
T ss_pred cccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHH
Confidence 111223333466888888877 44455555555555554211000 00000000
Q ss_pred ChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHH
Q 043116 156 ALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAV 235 (482)
Q Consensus 156 ~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 235 (482)
.+...+.-|..++++-+++..+..|.-||..- .......-+++.|+.+|++.|+..|..-...+..++-.-..+ -
T Consensus 578 ~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FF--Gk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r---s 652 (1431)
T KOG1240|consen 578 TVEQMVSSLLSDSPPIVKRALLESIIPLCVFF--GKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR---S 652 (1431)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh--hhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee---e
Confidence 12222222224444556666666666666431 111122457788888999999998888888777666321111 1
Q ss_pred HHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 043116 236 IEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA 311 (482)
Q Consensus 236 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 311 (482)
++..++|.|..-|.++++-|...|++++.-|+...--....+. .+++....+|-++ +.-+|..++..|..++.
T Consensus 653 ~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 653 VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence 3446788999999999999999999999999874332222232 3677778888899 99999999999988875
No 109
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.00082 Score=66.01 Aligned_cols=356 Identities=15% Similarity=0.151 Sum_probs=200.0
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCC
Q 043116 34 AGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHG 113 (482)
Q Consensus 34 ~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 113 (482)
+-|+.+++-++=..++.|+++=.. +++ ..++|.+...|.+.+ +-+|..|..++..|-.. ...++. .
T Consensus 106 kDLQHPNEyiRG~TLRFLckLkE~-------ELl-epl~p~IracleHrh-sYVRrNAilaifsIyk~----~~~L~p-D 171 (948)
T KOG1058|consen 106 KDLQHPNEYIRGSTLRFLCKLKEP-------ELL-EPLMPSIRACLEHRH-SYVRRNAILAIFSIYKN----FEHLIP-D 171 (948)
T ss_pred hhccCchHhhcchhhhhhhhcCcH-------HHh-hhhHHHHHHHHhCcc-hhhhhhhheeehhHHhh----hhhhcC-C
Confidence 334455555555555555444211 111 236677777888888 78888888888777552 112222 1
Q ss_pred ChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHc--chhhhhHHHHHHHHHHHhhcCCCCC
Q 043116 114 AVPIFVKL-LASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELN--EHAKLSMLRTATWTLSNFCRGKPQP 190 (482)
Q Consensus 114 ~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~~~~~a~~~L~~L~~~~~~~ 190 (482)
+-+.+-++ ....++..+++|.-.|... + ++. ++..+...+. .+-+...+-..+..+...|...|.
T Consensus 172 apeLi~~fL~~e~DpsCkRNAFi~L~~~--D-~Er--------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~- 239 (948)
T KOG1058|consen 172 APELIESFLLTEQDPSCKRNAFLMLFTT--D-PER--------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPA- 239 (948)
T ss_pred hHHHHHHHHHhccCchhHHHHHHHHHhc--C-HHH--------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHH-
Confidence 22222333 3456777777776666554 2 111 1222322221 122344555555666666654332
Q ss_pred ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcC
Q 043116 191 PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLL-GHRSRLVLTAALRTIGNIVTG 269 (482)
Q Consensus 191 ~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~ 269 (482)
.....+..+..+|.+.++.++..+..+|..++..... .... ...++.++ +.++..++.-.+--|..+...
T Consensus 240 ---~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~a-lk~A-----a~~~i~l~~kesdnnvklIvldrl~~l~~~ 310 (948)
T KOG1058|consen 240 ---EKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTA-LKAA-----ASTYIDLLVKESDNNVKLIVLDRLSELKAL 310 (948)
T ss_pred ---HhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHH-HHHH-----HHHHHHHHHhccCcchhhhhHHHHHHHhhh
Confidence 2245677888888888888999998888888854332 2111 12333333 223333443344444444432
Q ss_pred ChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHH
Q 043116 270 DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA-GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVI 348 (482)
Q Consensus 270 ~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL 348 (482)
+....+ |.+-.++.+|.++ +-++|+.+......++. .+-+.+-.+++..+...--. =.+++...|...+.++
T Consensus 311 ~~~il~-----~l~mDvLrvLss~-dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLikti 383 (948)
T KOG1058|consen 311 HEKILQ-----GLIMDVLRVLSSP-DLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTI 383 (948)
T ss_pred hHHHHH-----HHHHHHHHHcCcc-cccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHH
Confidence 332222 4566678888888 99999999988888876 44443333333222111110 0123445677788888
Q ss_pred HHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHH
Q 043116 349 SNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIEN 428 (482)
Q Consensus 349 ~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~ 428 (482)
..++.. -++. ...+++.|++.+.+.++.....++..+...++..++. +..+. -..++.
T Consensus 384 h~cav~-Fp~~-----aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~L------------r~~ii----~~l~~~ 441 (948)
T KOG1058|consen 384 HACAVK-FPEV-----AATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNL------------RASII----EKLLET 441 (948)
T ss_pred HHHhhc-ChHH-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchH------------HHHHH----HHHHHh
Confidence 888775 3343 3347899999999999988888888888877765543 22110 111222
Q ss_pred hhcCCCHHHHHHHHHHHHHhcCCCC
Q 043116 429 LQSHDNNDIHEMSVKILETYWCGRV 453 (482)
Q Consensus 429 l~~~~~~~v~~~a~~~l~~~~~~~~ 453 (482)
+-.-.+.++++-|.|++-.|...+.
T Consensus 442 ~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 442 FPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred hhhhcccccchhHHHHHHHHHhhhH
Confidence 2233466778888888888877765
No 110
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.22 E-value=0.00096 Score=63.57 Aligned_cols=378 Identities=13% Similarity=0.121 Sum_probs=209.6
Q ss_pred hhchhhhhhhccHHHHHHHh---------cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHH
Q 043116 17 ALSLNLQSKFEILPTMVAGV---------WSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQL 87 (482)
Q Consensus 17 ~~~~~~~~~~~~i~~l~~~l---------~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v 87 (482)
..+++..+...++-.+-+.= .+.++-.|.+|+..|..+-.++ .|.....++.+..-....+ ...
T Consensus 171 ~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~d------kma~lklv~hf~~n~smkn-q~a 243 (898)
T COG5240 171 QTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTD------KMAQLKLVEHFRGNASMKN-QLA 243 (898)
T ss_pred HHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhccc------HHHHHHHHHHhhccccccc-chh
Confidence 34455555554444443321 1345778899999888876553 1222223333333333333 333
Q ss_pred HHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcch
Q 043116 88 QFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEH 167 (482)
Q Consensus 88 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~ 167 (482)
....+++...+...+++.+..+ .|.|-..+++.-+.+.-.+++++..++..+-. ..+.+ ..+..|-..| ..
T Consensus 244 ~V~lvr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~~-~~vs~L~~fL-~s 314 (898)
T COG5240 244 GVLLVRATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFVD-QTVSSLRTFL-KS 314 (898)
T ss_pred heehHHHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHHH-HHHHHHHHHH-hc
Confidence 3444556666666566555433 46677778777778888888888888754411 11111 1344444455 56
Q ss_pred hhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh
Q 043116 168 AKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKL 247 (482)
Q Consensus 168 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 247 (482)
+....+-.|..+|..|+...|..... +-+-+-.++.+.+..+...|+..|..-. .++.+..++. .++.++.=
T Consensus 315 ~rv~~rFsA~Riln~lam~~P~kv~v----cN~evEsLIsd~Nr~IstyAITtLLKTG--t~e~idrLv~--~I~sfvhD 386 (898)
T COG5240 315 TRVVLRFSAMRILNQLAMKYPQKVSV----CNKEVESLISDENRTISTYAITTLLKTG--TEETIDRLVN--LIPSFVHD 386 (898)
T ss_pred chHHHHHHHHHHHHHHHhhCCceeee----cChhHHHHhhcccccchHHHHHHHHHcC--chhhHHHHHH--HHHHHHHh
Confidence 66677888999999999876543322 2223445666777777777776665433 3444443332 23333333
Q ss_pred hCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChH
Q 043116 248 LGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIG 327 (482)
Q Consensus 248 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~ 327 (482)
++++-..+...|++.|+.. .+.... ..+..|...|......+.++.+..++.......|+.... ++.
T Consensus 387 ~SD~FKiI~ida~rsLsl~---Fp~k~~-----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe 453 (898)
T COG5240 387 MSDGFKIIAIDALRSLSLL---FPSKKL-----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALE 453 (898)
T ss_pred hccCceEEeHHHHHHHHhh---CcHHHH-----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHH
Confidence 3333334444455554443 443333 234556666555447788888888888888766664433 344
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCC
Q 043116 328 PIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNI 407 (482)
Q Consensus 328 ~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~ 407 (482)
.|+..+.+. +.-+.+...|+-+...++.... ....+..+..-+--++.-++..|+.+|.++.-....-
T Consensus 454 ~LC~fIEDc--ey~~I~vrIL~iLG~EgP~a~~----P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~------ 521 (898)
T COG5240 454 VLCTFIEDC--EYHQITVRILGILGREGPRAKT----PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV------ 521 (898)
T ss_pred HHHHHHhhc--chhHHHHHHHHHhcccCCCCCC----cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc------
Confidence 566666533 2334445555544443211100 0112344444444466678888888888875322111
Q ss_pred CcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 043116 408 GDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGR 452 (482)
Q Consensus 408 ~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 452 (482)
+........+....++.+++|+++|.-.++.+-..+
T Consensus 522 ---------~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~d 557 (898)
T COG5240 522 ---------VSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSD 557 (898)
T ss_pred ---------ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhh
Confidence 111222456777789999999999998888765443
No 111
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.19 E-value=0.0003 Score=72.42 Aligned_cols=293 Identities=15% Similarity=0.085 Sum_probs=184.7
Q ss_pred hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC---C-C
Q 043116 115 VPIFVKLLAS-PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK---P-Q 189 (482)
Q Consensus 115 i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~---~-~ 189 (482)
++.+...++. .....+..|+..|..++..... +..++ .++|.++.++ .++...++..|+.+|..+...- + .
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d--e~~LD-RVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDD--EVKLD-RVLPYFVHLL-MDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch--HHHHh-hhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 4555555554 3456677888888888743321 11122 3788888888 7888899999998888777543 2 2
Q ss_pred CChhhhhhHHHHHHHHhcc-CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 043116 190 PPFNQIRPALRVLAQLIRS-NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVT 268 (482)
Q Consensus 190 ~~~~~~~~~~~~L~~ll~~-~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 268 (482)
......+-++|.|..++.+ ....++..-+.+|..++.... .+.+.+.-.....++++++.+. ...
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~----rFle~~q~~~~~g~~n~~nset----------~~~ 565 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY----RFLELTQELRQAGMLNDPNSET----------APE 565 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH----HHHHHHHHHHhcccccCccccc----------ccc
Confidence 2333446788999999887 556678888888888874321 2222222222333445544430 111
Q ss_pred C-ChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHH
Q 043116 269 G-DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWV 347 (482)
Q Consensus 269 ~-~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~a 347 (482)
. .....+.+. .++-+.+..++.++ ++.||..-...|+-+|..-. +.--+.-+++.|+..|.+.|+.+|..-...
T Consensus 566 ~~~~~~~~~L~-~~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFG---k~ksND~iLshLiTfLNDkDw~LR~aFfds 640 (1431)
T KOG1240|consen 566 QNYNTELQALH-HTVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFG---KEKSNDVILSHLITFLNDKDWRLRGAFFDS 640 (1431)
T ss_pred cccchHHHHHH-HHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhh---hcccccchHHHHHHHhcCccHHHHHHHHhh
Confidence 1 112222222 23444566777777 78899888888888875100 000122368899999999999998776666
Q ss_pred HHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHH
Q 043116 348 ISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIE 427 (482)
Q Consensus 348 L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~ 427 (482)
|.-++..-.... .++..++.|.+-+.++++-|...|+.+|..+++.+--.+. .. .+.++...
T Consensus 641 I~gvsi~VG~rs----~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~---------~v-----~~i~~~v~ 702 (1431)
T KOG1240|consen 641 IVGVSIFVGWRS----VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKP---------AV-----KDILQDVL 702 (1431)
T ss_pred ccceEEEEeeee----HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchH---------HH-----HHHHHhhh
Confidence 654433211111 3556889999999999999999999999999986544321 11 12245556
Q ss_pred HhhcCCCHHHHHHHHHHHHHh
Q 043116 428 NLQSHDNNDIHEMSVKILETY 448 (482)
Q Consensus 428 ~l~~~~~~~v~~~a~~~l~~~ 448 (482)
-++-++|.=|+..+..+|-..
T Consensus 703 PlL~hPN~WIR~~~~~iI~~~ 723 (1431)
T KOG1240|consen 703 PLLCHPNLWIRRAVLGIIAAI 723 (1431)
T ss_pred hheeCchHHHHHHHHHHHHHH
Confidence 668899999998888887653
No 112
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.19 E-value=4.7e-06 Score=50.89 Aligned_cols=41 Identities=24% Similarity=0.504 Sum_probs=37.1
Q ss_pred ChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 043116 270 DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA 311 (482)
Q Consensus 270 ~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 311 (482)
+++..+.+++.|+++.|+++|++. ++.++++|+|+|+|++.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence 356678899999999999999988 99999999999999974
No 113
>PF05536 Neurochondrin: Neurochondrin
Probab=98.17 E-value=0.00021 Score=70.82 Aligned_cols=238 Identities=13% Similarity=0.092 Sum_probs=164.4
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh---HHHHHhCCChHHHHHhhCC-------CCHHHHHHHHHHHHHh
Q 043116 71 VVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN---TKVAIDHGAVPIFVKLLAS-------PSDDVREQAVWALGNV 140 (482)
Q Consensus 71 ~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~g~i~~L~~ll~~-------~~~~~~~~a~~~L~~l 140 (482)
.+...+.+|+..+ .+-|..++-.+.+++..++.. ++.+.+.=+.+.+-++|.+ +....+..|+..|+.+
T Consensus 6 ~l~~c~~lL~~~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 6 SLEKCLSLLKSAD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHhccCC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3566788999888 688999999999999866533 3457777678889999987 3466788899999999
Q ss_pred hCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHH
Q 043116 141 AGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRA 220 (482)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~ 220 (482)
|.. |+....-.-.+-+|.++..+.+..+..+...+..+|..++............|.++.|++.+.+ .+.....++.+
T Consensus 85 ~~~-~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 85 CRD-PELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred cCC-hhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence 963 4332111112369999999966666699999999999999776666666668999999999887 66667888888
Q ss_pred HHHhccCCcHHH-HH--HHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhh-----HHHHHhcCchHHHHHHhcC
Q 043116 221 LAYLADGTNDKI-QA--VIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQ-----TQCIINCGALRYLLGLLIH 292 (482)
Q Consensus 221 L~~l~~~~~~~~-~~--~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~l~~~~~i~~L~~ll~~ 292 (482)
+.++........ .. -.-..+++.+...........+-..+..|+.+....+.. ...-.-..+...+..++++
T Consensus 163 L~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s 242 (543)
T PF05536_consen 163 LLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS 242 (543)
T ss_pred HHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence 888775433111 00 000134455555556566667788899999888755321 1111223456667777777
Q ss_pred CCchhHHHHHHHHHHHHhc
Q 043116 293 NHNKSIKKEVCWIISNITA 311 (482)
Q Consensus 293 ~~~~~v~~~a~~~L~nl~~ 311 (482)
...+.-|..+....+.+..
T Consensus 243 r~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 243 RLTPSQRDPALNLAASLLD 261 (543)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 7667777777766666654
No 114
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.11 E-value=2.6e-05 Score=69.08 Aligned_cols=185 Identities=15% Similarity=0.207 Sum_probs=118.4
Q ss_pred CCCChhhHHHHHHHHhHhhcCC--hhhHHHHHhc--CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 043116 249 GHRSRLVLTAALRTIGNIVTGD--DFQTQCIINC--GALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAG 324 (482)
Q Consensus 249 ~~~~~~v~~~a~~~L~~l~~~~--~~~~~~l~~~--~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 324 (482)
.+.++..+..++..|..++.++ ......+.+. .++..+...+.+. ...+.+.|+.++..++......+..+.+ .
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD-I 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-H
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH-H
Confidence 6678999999999999998766 2222222211 4567777888877 7889999999999998743333444544 4
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCC-HHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccc
Q 043116 325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGT-HEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKN 403 (482)
Q Consensus 325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~-~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~ 403 (482)
++|.|++.+.++..-++..|..+|..++...+ ... . ..+.+.....+.++.++..++..+..++........
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~--~-----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~ 167 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK--I-----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS 167 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H--H-----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH--H-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence 88999999999889999999999999998654 121 1 266777788999999999999999999876551110
Q ss_pred cCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043116 404 TDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWC 450 (482)
Q Consensus 404 ~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 450 (482)
. +.....-....+.+.....+.+++|++.|..++..++.
T Consensus 168 ~--------l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 168 V--------LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp G--------G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred h--------hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 0 01100012346778888999999999999988887643
No 115
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.10 E-value=0.00051 Score=65.36 Aligned_cols=288 Identities=13% Similarity=0.123 Sum_probs=167.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHH
Q 043116 29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKV 108 (482)
Q Consensus 29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 108 (482)
.|.|-.++++....+++++++..+.++..+- ....+.. .+..|-.+|+++. ...|..|+++|..++...|+...
T Consensus 266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv---~~~~~~~-~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~kv~- 339 (898)
T COG5240 266 RPFLNSWLSDKFEMVFLEAARAVCALSEENV---GSQFVDQ-TVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQKVS- 339 (898)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHHHHHhcc---CHHHHHH-HHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCceee-
Confidence 3444455556668999999999999887641 1122222 4666778888888 88999999999999986665321
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCC
Q 043116 109 AIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP 188 (482)
Q Consensus 109 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~ 188 (482)
-+=+-+-.++.+.+..+...|+.+|..- +..+.-+.++. .++.++.-+ +......+..++..||..-|
T Consensus 340 ----vcN~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrLv~--~I~sfvhD~----SD~FKiI~ida~rsLsl~Fp 407 (898)
T COG5240 340 ----VCNKEVESLISDENRTISTYAITTLLKT--GTEETIDRLVN--LIPSFVHDM----SDGFKIIAIDALRSLSLLFP 407 (898)
T ss_pred ----ecChhHHHHhhcccccchHHHHHHHHHc--CchhhHHHHHH--HHHHHHHhh----ccCceEEeHHHHHHHHhhCc
Confidence 1113444566666766666666655443 33333233322 233344333 22333344455555555444
Q ss_pred CCChhhhhhHHHHHHHHh-ccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC-ChhhHHHHHHHHhHh
Q 043116 189 QPPFNQIRPALRVLAQLI-RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR-SRLVLTAALRTIGNI 266 (482)
Q Consensus 189 ~~~~~~~~~~~~~L~~ll-~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~l 266 (482)
.... ..+..|...| +.+.-+...++..++..+..+.++..+ ..+..|+.++.+. -+.+....+.+|+
T Consensus 408 ~k~~----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDcey~~I~vrIL~iLG-- 476 (898)
T COG5240 408 SKKL----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDCEYHQITVRILGILG-- 476 (898)
T ss_pred HHHH----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhcchhHHHHHHHHHhc--
Confidence 3333 2334444333 355677888888888888877665443 2345666666543 2444444444444
Q ss_pred hcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHH
Q 043116 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAW 346 (482)
Q Consensus 267 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~ 346 (482)
...|..... ...+..+..-+--. +.-+|..|..+|..++....+ ......+...|-+.+.+.|.++|..|..
T Consensus 477 -~EgP~a~~P---~~yvrhIyNR~iLE-N~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf 548 (898)
T COG5240 477 -REGPRAKTP---GKYVRHIYNRLILE-NNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASF 548 (898)
T ss_pred -ccCCCCCCc---chHHHHHHHHHHHh-hhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHH
Confidence 332221100 01333444433334 667999999999888763211 1122235566778888999999999999
Q ss_pred HHHHhhc
Q 043116 347 VISNATS 353 (482)
Q Consensus 347 aL~~l~~ 353 (482)
++.++-.
T Consensus 549 ~l~~~~~ 555 (898)
T COG5240 549 LLRNMRL 555 (898)
T ss_pred HHHhhhh
Confidence 9998853
No 116
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.09 E-value=0.0039 Score=62.73 Aligned_cols=313 Identities=12% Similarity=0.063 Sum_probs=185.9
Q ss_pred HHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHH
Q 043116 32 MVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAI 110 (482)
Q Consensus 32 l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 110 (482)
+...+. ++.|.+..++++.+...++.. . -...+.. -++...+..+.....+-++..|+++++..++ ++....+
T Consensus 454 ~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~-~-~~~~~~~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~- 527 (1005)
T KOG2274|consen 454 IDNGLVYQESPFLLLRAFLTISKFSSST-V-INPQLLQ-HFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSL- 527 (1005)
T ss_pred HHhhcccccCHHHHHHHHHHHHHHHhhh-c-cchhHHH-HHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceecccc-
Confidence 333444 566877779999999887762 1 1111111 2344445555544436789999999888874 2322222
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHc-chhhhhHHHHHHHHHHHhhcCCCC
Q 043116 111 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELN-EHAKLSMLRTATWTLSNFCRGKPQ 189 (482)
Q Consensus 111 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~L~~~~~~ 189 (482)
..+++..|..+....+.++-...+.+|+..+.-+|+.... .++.+.|..+.+.. .+.|+.+...+-.++..++... .
T Consensus 528 ~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~ 605 (1005)
T KOG2274|consen 528 QPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-A 605 (1005)
T ss_pred chHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-H
Confidence 2367788888888888888889999999999888775433 34456666666653 4566767777777777777642 2
Q ss_pred CChhhhhhHHHHHHHHhccCC----hhHHHHHHHHHHHhccCCc-HHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHH
Q 043116 190 PPFNQIRPALRVLAQLIRSND----EKVLTDACRALAYLADGTN-DKIQAVIEAGVCPRLVKLL-GHRSRLVLTAALRTI 263 (482)
Q Consensus 190 ~~~~~~~~~~~~L~~ll~~~~----~~~~~~~l~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L 263 (482)
....+....+|.+++.+..++ .....-++..|..+.++.+ ...+.++ .-.++.+.++. .+++..+...+-.||
T Consensus 606 ~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcL 684 (1005)
T KOG2274|consen 606 NYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECL 684 (1005)
T ss_pred hhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHH
Confidence 233345789999999999776 5566667777776665433 2333233 34556666665 556777888888999
Q ss_pred hHhhcCChhhHHHHHhcCchH--HHHHHhcCCCchhHHHHHHHHHHHHh----cCCHHHHHHHHHcCChHHHH-HHHhcC
Q 043116 264 GNIVTGDDFQTQCIINCGALR--YLLGLLIHNHNKSIKKEVCWIISNIT----AGNREQIQAVIDAGLIGPIV-NLLQDA 336 (482)
Q Consensus 264 ~~l~~~~~~~~~~l~~~~~i~--~L~~ll~~~~~~~v~~~a~~~L~nl~----~~~~~~~~~l~~~~~i~~L~-~ll~~~ 336 (482)
..+.....++...--..++.. .+++.+..=-+++.-..++..++.+. .+-...+...++ .++...+ ++-+.+
T Consensus 685 ra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d-~IL~Avisrmq~ae 763 (1005)
T KOG2274|consen 685 RALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLD-QILRAVISRLQQAE 763 (1005)
T ss_pred HHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHH-HHHHHHHHHHHHhh
Confidence 988876555443333333322 33333321112233334444444443 222222222221 1233322 233356
Q ss_pred ChhHHHHHHHHHHHhhcC
Q 043116 337 EFGTKKEAAWVISNATSG 354 (482)
Q Consensus 337 ~~~~~~~a~~aL~~l~~~ 354 (482)
...+....+.+++.+...
T Consensus 764 ~lsviQsLi~VfahL~~t 781 (1005)
T KOG2274|consen 764 TLSVIQSLIMVFAHLVHT 781 (1005)
T ss_pred hHHHHHHHHHHHHHHhhC
Confidence 778888888888888764
No 117
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=0.0094 Score=61.36 Aligned_cols=340 Identities=16% Similarity=0.148 Sum_probs=192.1
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH
Q 043116 27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT 106 (482)
Q Consensus 27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 106 (482)
..+..|+..++..|..++..|++.+..+++..+..-... ++...+.++...+.+..-..|+-+|+.++...--.-
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~-----vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQ-----VIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHH-----HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 456778888888999999999999999998863222333 444556655544435666788999999987432211
Q ss_pred HHHHhCCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhCCChhh--HHHHHHhCChHHHHHHHcchhhhhHHHHH
Q 043116 107 KVAIDHGAVPIFVKLLAS--------PSDDVREQAVWALGNVAGDSSRC--RDFVLSQGALIPLLAELNEHAKLSMLRTA 176 (482)
Q Consensus 107 ~~~~~~g~i~~L~~ll~~--------~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~~i~~l~~~l~~~~~~~~~~~a 176 (482)
..+. .++|.+.+.+.- ....+|..|+.+.+.+++..... +. +.. .....|+....-+.+...++.|
T Consensus 416 s~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~-~L~s~LL~~AlFDrevncRRAA 491 (1133)
T KOG1943|consen 416 SLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQ-SLASALLIVALFDREVNCRRAA 491 (1133)
T ss_pred HHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHH-HHHHHHHHHHhcCchhhHhHHH
Confidence 1111 345666665532 34578999999999888544321 11 111 1222222222245566778888
Q ss_pred HHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCC---hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh-hCCCC
Q 043116 177 TWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSND---EKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKL-LGHRS 252 (482)
Q Consensus 177 ~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~---~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-l~~~~ 252 (482)
..++.......++... ++ +++.+-| ...+.++-..++.-....+...+.+ +..++.. +.+=+
T Consensus 492 sAAlqE~VGR~~n~p~-----Gi----~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~-----f~~L~t~Kv~HWd 557 (1133)
T KOG1943|consen 492 SAALQENVGRQGNFPH-----GI----SLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPV-----FNHLLTKKVCHWD 557 (1133)
T ss_pred HHHHHHHhccCCCCCC-----ch----hhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHH-----HHHHHhccccccc
Confidence 8888877655322211 11 1122111 2233333333333222233222222 2233222 45567
Q ss_pred hhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH---HHHHHHH---cC--
Q 043116 253 RLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNRE---QIQAVID---AG-- 324 (482)
Q Consensus 253 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~---~~~~l~~---~~-- 324 (482)
+.++..+.++|.+++...++. ...+.++.++....+. +...+....-+.+.+...... ....+.+ ++
T Consensus 558 ~~irelaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~-~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~ 632 (1133)
T KOG1943|consen 558 VKIRELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSK-DASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLL 632 (1133)
T ss_pred HHHHHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCC-ChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhh
Confidence 889999999999988755553 3346788888888887 777777666666666542111 1111111 12
Q ss_pred -ChHHHHHHHhc-C-ChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 043116 325 -LIGPIVNLLQD-A-EFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILK 396 (482)
Q Consensus 325 -~i~~L~~ll~~-~-~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~ 396 (482)
+++.+...-.. + ..-++...+..+.++... ........+..+....+.+.+.+++ .++..+.+++..+..
T Consensus 633 ~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s-~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s 705 (1133)
T KOG1943|consen 633 SIIPPICDRYFYRGQGTLMRQATLKFIEQLSLS-KDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVS 705 (1133)
T ss_pred hhccHHHHHHhccchHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHH
Confidence 24444333222 2 245566677777777664 3333334444555666666666666 777777777777654
No 118
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.0016 Score=64.15 Aligned_cols=281 Identities=16% Similarity=0.130 Sum_probs=175.6
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhC
Q 043116 76 VEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQG 155 (482)
Q Consensus 76 ~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 155 (482)
-+=|++++ .-+|-..++.|+.+- .++... ..+|.+...|.+...-+|++|+.++..|...... .+. +
T Consensus 105 RkDLQHPN-EyiRG~TLRFLckLk--E~ELle-----pl~p~IracleHrhsYVRrNAilaifsIyk~~~~---L~p--D 171 (948)
T KOG1058|consen 105 RKDLQHPN-EYIRGSTLRFLCKLK--EPELLE-----PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH---LIP--D 171 (948)
T ss_pred hhhccCch-HhhcchhhhhhhhcC--cHHHhh-----hhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh---hcC--C
Confidence 34466777 778888888888773 344433 4578888899999999999999999988643111 111 1
Q ss_pred ChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc---cCChhHHHHHHHHHHHhccCCcHHH
Q 043116 156 ALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR---SNDEKVLTDACRALAYLADGTNDKI 232 (482)
Q Consensus 156 ~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~---~~~~~~~~~~l~~L~~l~~~~~~~~ 232 (482)
+-..+-..|....|+.-.++|.-.|...-. +.++..+...+. +-++..+......+...+...+...
T Consensus 172 apeLi~~fL~~e~DpsCkRNAFi~L~~~D~----------ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~ 241 (948)
T KOG1058|consen 172 APELIESFLLTEQDPSCKRNAFLMLFTTDP----------ERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK 241 (948)
T ss_pred hHHHHHHHHHhccCchhHHHHHHHHHhcCH----------HHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh
Confidence 222333444456677777777655543221 344444444433 3356677777777777775444332
Q ss_pred HHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 043116 233 QAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAG 312 (482)
Q Consensus 233 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 312 (482)
..++..+..+|.+.++.++.+|+.+|.+++. .+...+. ....++.++....+..++--..--|..+...
T Consensus 242 -----~~~i~~i~~lL~stssaV~fEaa~tlv~lS~-~p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~ 310 (948)
T KOG1058|consen 242 -----ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSN-DPTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKAL 310 (948)
T ss_pred -----hHHHHHHHHHHhcCCchhhhhhcceEEEccC-CHHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhh
Confidence 3467889999999999999999999999876 4443332 2345666665554666776666666666532
Q ss_pred CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHH
Q 043116 313 NREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLE 392 (482)
Q Consensus 313 ~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~ 392 (482)
... +++ |.+-.+++++.+++-+++..++.....++...+-+..-.+....+...--. -+.++.+.+...++.+.
T Consensus 311 ~~~----il~-~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih 384 (948)
T KOG1058|consen 311 HEK----ILQ-GLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIH 384 (948)
T ss_pred hHH----HHH-HHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHH
Confidence 222 222 466677888899999999999999999987666555444443332222111 12233355665666666
Q ss_pred HHHH
Q 043116 393 NILK 396 (482)
Q Consensus 393 ~l~~ 396 (482)
...-
T Consensus 385 ~cav 388 (948)
T KOG1058|consen 385 ACAV 388 (948)
T ss_pred HHhh
Confidence 5543
No 119
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=0.0036 Score=57.86 Aligned_cols=231 Identities=13% Similarity=0.145 Sum_probs=165.8
Q ss_pred chhchhhhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC----CCC----cHHHHHhcCCHHHHHHhhcCCC----
Q 043116 16 PALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFD----RNS----PIEKVIQSGVVPRFVEFLMRED---- 83 (482)
Q Consensus 16 ~~~~~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~----~~~----~~~~~~~~g~~~~L~~ll~~~~---- 83 (482)
|++-+.+. .+++++.|+++|..++.++-...+..|..+...+ ..+ ....+++.++++.|++.+..=+
T Consensus 115 PdLYp~lv-eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvk 193 (536)
T KOG2734|consen 115 PDLYPILV-ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVK 193 (536)
T ss_pred hHHHHHHH-HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcch
Confidence 33444443 6778999999999999999999999999987642 112 2566778899999998886433
Q ss_pred -ChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHH
Q 043116 84 -YPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPL 160 (482)
Q Consensus 84 -~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l 160 (482)
..+-...+..++-|+..-.+.....+.+.|.+..|+.-+.. +-..-+..|..+++-+..++.+.+...-...++..+
T Consensus 194 eea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~l 273 (536)
T KOG2734|consen 194 EEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVL 273 (536)
T ss_pred hhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHH
Confidence 12334556778888888888899999999988888774432 445566778888888887776677777777888888
Q ss_pred HHHHcc--------hhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCc--H
Q 043116 161 LAELNE--------HAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTN--D 230 (482)
Q Consensus 161 ~~~l~~--------~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~--~ 230 (482)
++.+.- ....++.++...+|+.+.....+.........++...-+++. ....+..++..|-....+++ +
T Consensus 274 L~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~ 352 (536)
T KOG2734|consen 274 LRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTP 352 (536)
T ss_pred HhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchH
Confidence 888741 124567888888888888876555555556666655555554 55567788888888887665 6
Q ss_pred HHHHHHHhCcHHHHHHhh
Q 043116 231 KIQAVIEAGVCPRLVKLL 248 (482)
Q Consensus 231 ~~~~~~~~~~l~~L~~ll 248 (482)
.+..+++..++..+....
T Consensus 353 ~C~kfVe~lGLrtiF~~F 370 (536)
T KOG2734|consen 353 NCNKFVEILGLRTIFPLF 370 (536)
T ss_pred HHHHHHHHHhHHHHHHHH
Confidence 666777776666665543
No 120
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.03 E-value=0.0055 Score=61.86 Aligned_cols=140 Identities=16% Similarity=0.155 Sum_probs=100.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHH
Q 043116 29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKV 108 (482)
Q Consensus 29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 108 (482)
+|.+++...+.|.+++...-..|...+...+ +.++- .++.+.+=+++++ +.+|..|+++++.+-. ++...
T Consensus 57 f~dViK~~~trd~ElKrL~ylYl~~yak~~P----~~~lL--avNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~~- 126 (757)
T COG5096 57 FPDVIKNVATRDVELKRLLYLYLERYAKLKP----ELALL--AVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELLG- 126 (757)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhccCH----HHHHH--HHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHHH-
Confidence 3444444445556666555555666655532 11121 3677888888999 9999999999998833 33322
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcC
Q 043116 109 AIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG 186 (482)
Q Consensus 109 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~ 186 (482)
.+++++.+++.++++.+|..|+-++.++..-++ +.+.+.|.+..+..++ .++++.+..+|+.+|..+...
T Consensus 127 ----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 127 ----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence 357899999999999999999999999985543 3455666666666666 888999999999999988766
No 121
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.03 E-value=5.8e-05 Score=66.80 Aligned_cols=187 Identities=16% Similarity=0.079 Sum_probs=120.8
Q ss_pred ccCChhHHHHHHHHHHHhccCC--cHHHHHHHHh--CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCc
Q 043116 207 RSNDEKVLTDACRALAYLADGT--NDKIQAVIEA--GVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGA 282 (482)
Q Consensus 207 ~~~~~~~~~~~l~~L~~l~~~~--~~~~~~~~~~--~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~ 282 (482)
.+.+++.+..++.-|..+..+. ......+.+. .++..+...+.+....+...|+.++..++........... ..+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA-DIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH-HHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH-HHH
Confidence 5678999999999999988655 2222222221 5566777788877888999999999999975544444333 357
Q ss_pred hHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC-hHHHHHHHhcCChhHHHHHHHHHHHhhcCCC--HHH
Q 043116 283 LRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGL-IGPIVNLLQDAEFGTKKEAAWVISNATSGGT--HEQ 359 (482)
Q Consensus 283 i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~-i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~--~~~ 359 (482)
++.|++.+.++ ...++..|..+|..++...+- .. .+ ++.+.....+.++.+|..++..+..++.... ...
T Consensus 96 l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~-~~-----~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 96 LPPLLKKLGDS-KKFIREAANNALDAIIESCSY-SP-----KILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCc-HH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 89999999988 888999999999999885441 00 12 4556666788999999999999999987543 111
Q ss_pred HH-HHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhc
Q 043116 360 IK-HLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAE 401 (482)
Q Consensus 360 ~~-~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~ 401 (482)
.. ...-..+.+.+...+.+++++|+..+-.++..+....+..
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 11 1011346788889999999999999999999998765554
No 122
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=0.012 Score=62.73 Aligned_cols=326 Identities=16% Similarity=0.173 Sum_probs=184.7
Q ss_pred hcccchhchhhhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHH
Q 043116 12 QISAPALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91 (482)
Q Consensus 12 ~~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a 91 (482)
..+.++..+++. ..||+|.+.=-.+++.+|..-..+...+.... ...++.. -..++.-|+.-+.+..| .+|+.+
T Consensus 986 ~~a~~kl~p~l~---kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~-k~~vd~y-~neIl~eLL~~lt~kew-RVReas 1059 (1702)
T KOG0915|consen 986 KQAGEKLEPYLK---KLIPRLYRYQYDPDKKVQDAMTSIWNALITDS-KKVVDEY-LNEILDELLVNLTSKEW-RVREAS 1059 (1702)
T ss_pred HHHHHhhhhHHH---HhhHHHhhhccCCcHHHHHHHHHHHHHhccCh-HHHHHHH-HHHHHHHHHHhccchhH-HHHHHH
Confidence 334445555433 24788888777888888876666666666553 2222222 23467777777788885 999999
Q ss_pred HHHHHHHhCCChHh--HHHHHhCCChHHHHHhhCCCCHHHHHH---HHHHHHHhhCC---C---hhhHHHHHHhCChHHH
Q 043116 92 ARALTNIASGTSEN--TKVAIDHGAVPIFVKLLASPSDDVREQ---AVWALGNVAGD---S---SRCRDFVLSQGALIPL 160 (482)
Q Consensus 92 ~~~L~~l~~~~~~~--~~~~~~~g~i~~L~~ll~~~~~~~~~~---a~~~L~~l~~~---~---~~~~~~~~~~~~i~~l 160 (482)
+-+|..+..+.+.- .+.+- .+...+.+.+++-.+.+|+. ++.+|+.+|.. . ...++.+ + .++|.+
T Consensus 1060 clAL~dLl~g~~~~~~~e~lp--elw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l-~-~iLPfL 1135 (1702)
T KOG0915|consen 1060 CLALADLLQGRPFDQVKEKLP--ELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEAL-D-IILPFL 1135 (1702)
T ss_pred HHHHHHHHcCCChHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH-H-HHHHHH
Confidence 99999999854322 23232 24455555665555666664 45666766621 1 1111211 1 134444
Q ss_pred HHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhc------------cCC
Q 043116 161 LAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLA------------DGT 228 (482)
Q Consensus 161 ~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~------------~~~ 228 (482)
+.-=.-+.-+++++.+..++..|+...+..-......++|.+......-.+.+..+...-+.+.. ..+
T Consensus 1136 l~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~akss 1215 (1702)
T KOG0915|consen 1136 LDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSS 1215 (1702)
T ss_pred hccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCC
Confidence 33211234568889999999999998876666666788888888877666655444222222221 111
Q ss_pred c--HHHHHHHH-------hCcHHHHHHhhCCC-ChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhH
Q 043116 229 N--DKIQAVIE-------AGVCPRLVKLLGHR-SRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSI 298 (482)
Q Consensus 229 ~--~~~~~~~~-------~~~l~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v 298 (482)
+ +.+...++ ..++|.+.++++.+ .-..+..++..+.-|+..-..... -.....+..++..+++. ++.+
T Consensus 1216 pmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emt-P~sgKll~al~~g~~dR-Nesv 1293 (1702)
T KOG0915|consen 1216 PMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMT-PYSGKLLRALFPGAKDR-NESV 1293 (1702)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccC-cchhHHHHHHhhccccc-cHHH
Confidence 1 01111111 13455555555432 223344444444444421110000 01123567788888887 9999
Q ss_pred HHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcC
Q 043116 299 KKEVCWIISNITA-GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSG 354 (482)
Q Consensus 299 ~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~ 354 (482)
++.-+.+.+.++. .++++.+.+++ .++..+..+.+..+..++..+.+++.+
T Consensus 1294 ~kafAsAmG~L~k~Ss~dq~qKLie-----~~l~~~l~k~es~~siscatis~Ian~ 1345 (1702)
T KOG0915|consen 1294 RKAFASAMGYLAKFSSPDQMQKLIE-----TLLADLLGKDESLKSISCATISNIANY 1345 (1702)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHH-----HHHHHHhccCCCccchhHHHHHHHHHh
Confidence 9999999999987 56666766654 333333333333446677777776553
No 123
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.015 Score=59.41 Aligned_cols=344 Identities=15% Similarity=0.127 Sum_probs=198.3
Q ss_pred HHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhc------CC-CChHHHHHHHHHHHHHhCC--ChHhHHHHHhCCCh
Q 043116 45 LEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLM------RE-DYPQLQFEAARALTNIASG--TSENTKVAIDHGAV 115 (482)
Q Consensus 45 ~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~------~~-~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~g~i 115 (482)
..|...+..+++..+.+.. .++++.+++.+. .+ +++.-+..|++.+++++.- -+..-+..++.-++
T Consensus 390 ~Aa~~~l~~~~~KR~ke~l-----~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv 464 (1010)
T KOG1991|consen 390 TAALDFLTTLVSKRGKETL-----PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLV 464 (1010)
T ss_pred HHHHHHHHHHHHhcchhhh-----hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHH
Confidence 3456666666655322222 345666666665 22 2256678889999998741 11111223333345
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCC---Ch
Q 043116 116 PIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQP---PF 192 (482)
Q Consensus 116 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~---~~ 192 (482)
+.+...++++..-+|..|+|.++.++..+-.....+. .++....+.+.++.+-+++..|+.+|..+..+.+.. ..
T Consensus 465 ~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~--~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~ 542 (1010)
T KOG1991|consen 465 NHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLS--EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS 542 (1010)
T ss_pred HHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHH--HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence 6666677888889999999999999943322222222 256667777766778899999999999999886433 22
Q ss_pred hhhhhHHHHHHHHhccCChhHHHHHHHHH-HHhccCCcHHHHHHHHhCcHHHHHHhhCC---C---ChhhHHHHHHHHhH
Q 043116 193 NQIRPALRVLAQLIRSNDEKVLTDACRAL-AYLADGTNDKIQAVIEAGVCPRLVKLLGH---R---SRLVLTAALRTIGN 265 (482)
Q Consensus 193 ~~~~~~~~~L~~ll~~~~~~~~~~~l~~L-~~l~~~~~~~~~~~~~~~~l~~L~~ll~~---~---~~~v~~~a~~~L~~ 265 (482)
....+.++.++++.+.-+.+....++..+ +..++.-......+++ .+...+.+++.. . +..=...|.++|..
T Consensus 543 ~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~T 621 (1010)
T KOG1991|consen 543 AHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRT 621 (1010)
T ss_pred hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHH
Confidence 34456666777777766655555555543 2333222112111222 344556666653 1 12233344444444
Q ss_pred hh---cC---ChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChh
Q 043116 266 IV---TG---DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFG 339 (482)
Q Consensus 266 l~---~~---~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 339 (482)
+. .. .+...+ -++...++.+-.++++. -.++-.+++..+.++....++.-..+++ +++.+.+.+.....+
T Consensus 622 i~Til~s~e~~p~vl~-~le~~~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW~--ll~li~e~~~~~~~d 697 (1010)
T KOG1991|consen 622 ISTILLSLENHPEVLK-QLEPIVLPVIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMWG--LLELILEVFQDDGID 697 (1010)
T ss_pred HHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHHH--HHHHHHHHHhhhhHH
Confidence 43 21 222222 22334666677777776 7778888888887777644333333443 778888888887788
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHH-HHcCChHHHHhcCCCCC--HHHHHHHHHHHHHHHHhchh
Q 043116 340 TKKEAAWVISNATSGGTHEQIKHL-VREGCVKPLCDLLPCPD--PQIVTVCLIGLENILKVGEA 400 (482)
Q Consensus 340 ~~~~a~~aL~~l~~~~~~~~~~~l-~~~~~l~~L~~ll~~~~--~~v~~~~l~~L~~l~~~~~~ 400 (482)
.-...+-+|.|+...+.+.....- .-.-+++.+..++.+.+ ..=...+.+.+..++-.+..
T Consensus 698 yf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg 761 (1010)
T KOG1991|consen 698 YFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKG 761 (1010)
T ss_pred HHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcC
Confidence 888899999999887765432210 01113344444454422 23344466677776654433
No 124
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.98 E-value=3.5e-05 Score=56.60 Aligned_cols=87 Identities=28% Similarity=0.420 Sum_probs=70.4
Q ss_pred HHHHHHHh-ccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHH
Q 043116 199 LRVLAQLI-RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCI 277 (482)
Q Consensus 199 ~~~L~~ll-~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l 277 (482)
+|.|++.+ +++++.++..++++|+.+. +. ..++.+..+++++++.++..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG---DP--------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT---HH--------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC---CH--------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57788888 7889999999999999543 11 34789999999999999999999999873
Q ss_pred HhcCchHHHHHHhcCCCchhHHHHHHHHHH
Q 043116 278 INCGALRYLLGLLIHNHNKSIKKEVCWIIS 307 (482)
Q Consensus 278 ~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~ 307 (482)
....++.|.+++.++.+..+|..|+++|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12378889999988757778999998875
No 125
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.0095 Score=61.32 Aligned_cols=261 Identities=12% Similarity=0.119 Sum_probs=163.5
Q ss_pred cCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhh
Q 043116 69 SGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSSRC 147 (482)
Q Consensus 69 ~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~ 147 (482)
++++..|...+++.+ ..++-.|+..++.++...|.. + ...++...++++.. +++..-..++-+|+.++...--.
T Consensus 340 E~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~~---L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl 414 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPPE---L-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL 414 (1133)
T ss_pred HHHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcHH---H-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence 357788888888999 799999999999999877722 2 22456667776553 34666678889999998544222
Q ss_pred HHHHHHhCChHHHHHHHcc-------hhhhhHHHHHHHHHHHhhcCC-CCCChhhhhhHHHHH-HHHhccCChhHHHHHH
Q 043116 148 RDFVLSQGALIPLLAELNE-------HAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVL-AQLIRSNDEKVLTDAC 218 (482)
Q Consensus 148 ~~~~~~~~~i~~l~~~l~~-------~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~L-~~ll~~~~~~~~~~~l 218 (482)
...+.+ +++.++.-+.. .....++..|+++++.+++.. +.........+.+.| ...+-+.+-..|..|.
T Consensus 415 ps~l~d--VvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAs 492 (1133)
T KOG1943|consen 415 PSLLED--VVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAAS 492 (1133)
T ss_pred hHHHHH--HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHH
Confidence 222222 46666665532 224578888999999999875 322222333344433 3345567778888888
Q ss_pred HHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHH-hcCCCchh
Q 043116 219 RALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGL-LIHNHNKS 297 (482)
Q Consensus 219 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~l-l~~~~~~~ 297 (482)
.++....-...+. ..| + .++.....-....+.++...+..-....+.....+++ .++.. +.+= +..
T Consensus 493 AAlqE~VGR~~n~-----p~G-i-~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HW-d~~ 559 (1133)
T KOG1943|consen 493 AALQENVGRQGNF-----PHG-I-SLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHW-DVK 559 (1133)
T ss_pred HHHHHHhccCCCC-----CCc-h-hhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccc-cHH
Confidence 8887655221110 001 1 1222222223345555555555555545544443433 23322 5555 889
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 043116 298 IKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATS 353 (482)
Q Consensus 298 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~ 353 (482)
+|..++|+|.+++...|+ ....+.++.+++...+.+...+.-+..+.+.++.
T Consensus 560 irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 560 IRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred HHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 999999999999765444 2345788999999888999888887777777765
No 126
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.0059 Score=62.17 Aligned_cols=360 Identities=13% Similarity=0.094 Sum_probs=196.1
Q ss_pred ccHHHHHHHhc------C--CCHHHHHHHHHHHHHHhcCCC-CCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHH
Q 043116 27 EILPTMVAGVW------S--DDNKVQLEATTLFRKMLSFDR-NSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTN 97 (482)
Q Consensus 27 ~~i~~l~~~l~------s--~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~ 97 (482)
+.++.+++.++ . .++.....|++.+..+++.-. ...-+...+.=+++.+...++++- -.+|..|+|+++.
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQ 488 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHH
Confidence 34555566665 2 245556667887777775321 222233344445566666777877 7899999999999
Q ss_pred HhCCChHhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHHh--CChHHHHHHHcchhhhhHHH
Q 043116 98 IASGTSENTKVAIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSSRCRDFVLSQ--GALIPLLAELNEHAKLSMLR 174 (482)
Q Consensus 98 l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~l~~~l~~~~~~~~~~ 174 (482)
++..+ +.+...-..++....+.+. +.+-.++..|+-+|..+..+.+.....+... +.++.++.+. +..+.+...
T Consensus 489 ~~~~d--f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~-ne~End~Lt 565 (1010)
T KOG1991|consen 489 FSSID--FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLS-NEVENDDLT 565 (1010)
T ss_pred HHhcc--CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHH-HhcchhHHH
Confidence 98522 2211111234555566666 6777889999999999986665443333221 2344555555 333333333
Q ss_pred HHHHHH-HHhhcCCCCCChhhhhhHHHHHHHHhcc---C---ChhHHHHHHHHHHHhcc------CCcHHHHHHHHhCcH
Q 043116 175 TATWTL-SNFCRGKPQPPFNQIRPALRVLAQLIRS---N---DEKVLTDACRALAYLAD------GTNDKIQAVIEAGVC 241 (482)
Q Consensus 175 ~a~~~L-~~L~~~~~~~~~~~~~~~~~~L~~ll~~---~---~~~~~~~~l~~L~~l~~------~~~~~~~~~~~~~~l 241 (482)
.+...+ ...+..-..........+.....+++.+ . +.+-...|.++|..+.+ ..++..+ -.+..++
T Consensus 566 ~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~~l 644 (1010)
T KOG1991|consen 566 NVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPIVL 644 (1010)
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHH
Confidence 333332 2333222223333446666777777764 1 23344445555544431 2222211 2233456
Q ss_pred HHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHH
Q 043116 242 PRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA-GNREQIQAV 320 (482)
Q Consensus 242 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l 320 (482)
+.+-.++++.-.++-+.++.++..+....++..-.+. |+++.+.+.++.. ..+.-....-++.|+.. +.+.....-
T Consensus 645 ~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~-~~dyf~d~~~~l~N~vt~g~~~~~s~~ 721 (1010)
T KOG1991|consen 645 PVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDD-GIDYFTDMMPALHNYVTYGTPSLLSNP 721 (1010)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhh-hHHHHHHHHHHHhhheeeCchhhhccc
Confidence 6666677777777888888888877765544443343 5778888888887 67777888899999887 433221110
Q ss_pred -HHcCChHHHHHHHhc--CChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhc----CC--CCCHHHHHHHHHHH
Q 043116 321 -IDAGLIGPIVNLLQD--AEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDL----LP--CPDPQIVTVCLIGL 391 (482)
Q Consensus 321 -~~~~~i~~L~~ll~~--~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~l----l~--~~~~~v~~~~l~~L 391 (482)
.-.-++.....++.+ ....-...|+..+..+..+... .... +++.++++ +. ..+...+..++...
T Consensus 722 ~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg-~~dq-----~iplf~~~a~~~l~~~~e~s~~~~~~leVv 795 (1010)
T KOG1991|consen 722 DYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKG-LLDQ-----YIPLFLELALSRLTREVETSELRVMLLEVV 795 (1010)
T ss_pred hHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcC-cHhh-----HhHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 011123333334444 2233345566666666543221 1111 33333332 22 24456666777766
Q ss_pred HHHHHhchh
Q 043116 392 ENILKVGEA 400 (482)
Q Consensus 392 ~~l~~~~~~ 400 (482)
.+-+.+.+.
T Consensus 796 inalyynP~ 804 (1010)
T KOG1991|consen 796 INALYYNPK 804 (1010)
T ss_pred HHHHHcCcH
Confidence 666555444
No 127
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.0094 Score=55.25 Aligned_cols=238 Identities=13% Similarity=0.153 Sum_probs=160.3
Q ss_pred HHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCC-----h----HhHHHHHhCCChHHHH
Q 043116 49 TLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGT-----S----ENTKVAIDHGAVPIFV 119 (482)
Q Consensus 49 ~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~-----~----~~~~~~~~~g~i~~L~ 119 (482)
.-+.-+++. ++.--.+++.+.++.|+.+|.+.+ .++....+..+..++..+ . ...+.+++.++++.|+
T Consensus 106 Q~mhvlAt~--PdLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv 182 (536)
T KOG2734|consen 106 QEMHVLATM--PDLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV 182 (536)
T ss_pred HHHHhhhcC--hHHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence 334444443 333346778999999999999999 799999999999998632 1 2356778888999999
Q ss_pred HhhCCCCHHH------HHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcch-hhhhHHHHHHHHHHHhhcCCCCCCh
Q 043116 120 KLLASPSDDV------REQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEH-AKLSMLRTATWTLSNFCRGKPQPPF 192 (482)
Q Consensus 120 ~ll~~~~~~~------~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~L~~~~~~~~~ 192 (482)
..+..-++.+ ...++..+-|+..-.+.....+.+.|.+.-|+..+... .-.....+|..+++-+...+.....
T Consensus 183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~ 262 (536)
T KOG2734|consen 183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRK 262 (536)
T ss_pred HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhh
Confidence 8886544333 34667788899888888888888889898888865433 3445566788888887776632211
Q ss_pred -hhhhhHHHHHHHHhc---cC------ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHH
Q 043116 193 -NQIRPALRVLAQLIR---SN------DEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRT 262 (482)
Q Consensus 193 -~~~~~~~~~L~~ll~---~~------~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~ 262 (482)
.-.-.++..+++-+. .. ..+..++...||+.+..... ....+....+++...-+++. ....+..++++
T Consensus 263 ~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~-nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Salkv 340 (536)
T KOG2734|consen 263 LLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPA-NRERFLKGEGLQLMNLMLRE-KKVSRGSALKV 340 (536)
T ss_pred hhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChh-hhhhhhccccHHHHHHHHHH-HHHhhhhHHHH
Confidence 111233344333322 11 24567778888888775544 45556676666766656655 45577889999
Q ss_pred HhHhhcCCh--hhHHHHHhcCchHHHHHHhc
Q 043116 263 IGNIVTGDD--FQTQCIINCGALRYLLGLLI 291 (482)
Q Consensus 263 L~~l~~~~~--~~~~~l~~~~~i~~L~~ll~ 291 (482)
|-....+.+ +.+..+.+..++..+....-
T Consensus 341 Ld~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 341 LDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 998888665 56667777777766664443
No 128
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.92 E-value=8.4e-05 Score=54.77 Aligned_cols=68 Identities=16% Similarity=0.344 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCCChhhHHHHHHh
Q 043116 87 LQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLL--ASPSDDVREQAVWALGNVAGDSSRCRDFVLSQ 154 (482)
Q Consensus 87 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 154 (482)
++...+++++|++..++..++.+.+.|+++.++... +..+|-+++.|++++.|++.++++.++.+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 466788999999999999999999999999999965 46789999999999999999999988877653
No 129
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.91 E-value=2e-05 Score=51.81 Aligned_cols=55 Identities=24% Similarity=0.558 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHh
Q 043116 296 KSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNA 351 (482)
Q Consensus 296 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l 351 (482)
+.+|..|+|+|++++...++..+.+.. .+++.|+.++.++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999988877777766554 6999999999999999999999999875
No 130
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.90 E-value=4.6e-05 Score=55.94 Aligned_cols=87 Identities=30% Similarity=0.463 Sum_probs=69.0
Q ss_pred HHHHHHhh-cCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 043116 72 VPRFVEFL-MREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDF 150 (482)
Q Consensus 72 ~~~L~~ll-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 150 (482)
+|.|++.+ ++++ +.+|..++++|+.+.. + ..++.|..+++++++.+|..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 57889988 6666 9999999999995522 2 34899999999999999999999999883
Q ss_pred HHHhCChHHHHHHHcchhhhhHHHHHHHHHH
Q 043116 151 VLSQGALIPLLAELNEHAKLSMLRTATWTLS 181 (482)
Q Consensus 151 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~ 181 (482)
....++.|...+.++.+..++..+..+|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12268889999966666667888888764
No 131
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.011 Score=58.69 Aligned_cols=72 Identities=21% Similarity=0.285 Sum_probs=56.3
Q ss_pred hhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCh
Q 043116 195 IRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDD 271 (482)
Q Consensus 195 ~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 271 (482)
.....+.+-.++.+....+...+++++.++......... ..+..+-.+++++....|-.|.++|..++...+
T Consensus 243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P 314 (865)
T KOG1078|consen 243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHP 314 (865)
T ss_pred hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCC
Confidence 346777788888888899999999999988865443221 256778888899999999999999999987555
No 132
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.88 E-value=0.006 Score=59.32 Aligned_cols=231 Identities=16% Similarity=0.119 Sum_probs=150.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC-----CChHHHHHHHHHHHHHhCCChHhHHHHHhC
Q 043116 38 SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMRE-----DYPQLQFEAARALTNIASGTSENTKVAIDH 112 (482)
Q Consensus 38 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 112 (482)
+.++.+..+|+++|+|+.... ...++.+.+.|..+.++..|+.. + .++.....+.|.-++...++.+..+++.
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~-~d~~Fl~~RLLFLlTa~~~~~~~~L~~e 120 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQP-SDVEFLDSRLLFLLTALRPDDRKKLIEE 120 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCC-hhHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 567899999999999999876 55567777999999999999876 5 7899999999999988888888777655
Q ss_pred -CChHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcch-------
Q 043116 113 -GAVPIFVKLLAS-----------------PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEH------- 167 (482)
Q Consensus 113 -g~i~~L~~ll~~-----------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~------- 167 (482)
+++..+...+.. .+......++.++.|+....+.... -...+.++.++.++...
T Consensus 121 ~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~ 199 (446)
T PF10165_consen 121 HHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSS 199 (446)
T ss_pred hhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCC
Confidence 677766665521 1344556788889999855543222 01223455555554322
Q ss_pred -hhhhHHHHHHHHHHHhhcCCC-C-------C----ChhhhhhHHHHHHHHhc----cC----ChhHHHHHHHHHHHhcc
Q 043116 168 -AKLSMLRTATWTLSNFCRGKP-Q-------P----PFNQIRPALRVLAQLIR----SN----DEKVLTDACRALAYLAD 226 (482)
Q Consensus 168 -~~~~~~~~a~~~L~~L~~~~~-~-------~----~~~~~~~~~~~L~~ll~----~~----~~~~~~~~l~~L~~l~~ 226 (482)
........++.+|.|+-.... . . ........+..++.+|. .. -.+.....+.+|.+++.
T Consensus 200 ~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~ 279 (446)
T PF10165_consen 200 PPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLAR 279 (446)
T ss_pred CcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHH
Confidence 123456667777776622110 0 0 00111345555555554 22 24678888899999987
Q ss_pred CCcHHHHHHHH----------------hCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCh
Q 043116 227 GTNDKIQAVIE----------------AGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDD 271 (482)
Q Consensus 227 ~~~~~~~~~~~----------------~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 271 (482)
.+....+.+.. ..+-..|++++.++.+.++..+...|..+|..+.
T Consensus 280 ~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 280 AAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred hcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence 76544443332 1355678888888777788888888888775443
No 133
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.0013 Score=64.57 Aligned_cols=136 Identities=21% Similarity=0.203 Sum_probs=96.0
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHH--HhccCCcHHHHHHHHhCcHHHHHHh-hCCCChhhHHHHHHHHhHhhcCChhh
Q 043116 197 PALRVLAQLIRSNDEKVLTDACRALA--YLADGTNDKIQAVIEAGVCPRLVKL-LGHRSRLVLTAALRTIGNIVTGDDFQ 273 (482)
Q Consensus 197 ~~~~~L~~ll~~~~~~~~~~~l~~L~--~l~~~~~~~~~~~~~~~~l~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~ 273 (482)
+.=+.+-+++.+.||-.|.....++. .....+. +.+..|+.. .++.+.+||+.|..+|+-++..+++.
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnn---------kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~ 589 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTGNN---------KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ 589 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCch---------hhHHHhhcccccccchHHHHHHHHHheeeEecChhh
Confidence 44556677888888888877666554 2222222 456667766 67889999999999999999877764
Q ss_pred HHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 043116 274 TQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATS 353 (482)
Q Consensus 274 ~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~ 353 (482)
.+..+.+|..+.++.||..++.+|+-.|.++... ..+..|-.+..+...-||+.|+.++.-+..
T Consensus 590 ---------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~-------eAi~lLepl~~D~~~fVRQgAlIa~amIm~ 653 (929)
T KOG2062|consen 590 ---------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK-------EAINLLEPLTSDPVDFVRQGALIALAMIMI 653 (929)
T ss_pred ---------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH-------HHHHHHhhhhcChHHHHHHHHHHHHHHHHH
Confidence 4567788877779999999999999999853321 123333344456667788889988888766
Q ss_pred CCCH
Q 043116 354 GGTH 357 (482)
Q Consensus 354 ~~~~ 357 (482)
..++
T Consensus 654 Q~t~ 657 (929)
T KOG2062|consen 654 QQTE 657 (929)
T ss_pred hccc
Confidence 4443
No 134
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.85 E-value=0.067 Score=57.42 Aligned_cols=397 Identities=10% Similarity=0.032 Sum_probs=197.7
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHH
Q 043116 28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTK 107 (482)
Q Consensus 28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 107 (482)
-+..++..+..+...++-.|+++|..+...++.-.... .+-..+..-+.+.. ..||+.|+..++......++...
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~----dvq~~Vh~R~~Dss-asVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRP----DVQEAVHGRLNDSS-ASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCH----HHHHHHHHhhccch-hHHHHHHHHHHhhhhhccHHHHH
Confidence 45667777887789999999999999998763222222 23333444445555 79999999999987776666544
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC
Q 043116 108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK 187 (482)
Q Consensus 108 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~ 187 (482)
.+. ..+..-+.+....+|..++..+..+|...|......- +...++... .+++..++.-+..++..+...+
T Consensus 892 qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~---~cakmlrRv-~DEEg~I~kLv~etf~klWF~p 962 (1692)
T KOG1020|consen 892 QYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVD---MCAKMLRRV-NDEEGNIKKLVRETFLKLWFTP 962 (1692)
T ss_pred HHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHH---HHHHHHHHh-ccchhHHHHHHHHHHHHHhccC
Confidence 333 4455556677889999999999999987776532211 223333333 3344458888999999999876
Q ss_pred CCC--ChhhhhhHHHHHHH-------HhccCChhHHHHHHHHHHHhccCCcHHHHHHHHh---CcHHHHHHhh-------
Q 043116 188 PQP--PFNQIRPALRVLAQ-------LIRSNDEKVLTDACRALAYLADGTNDKIQAVIEA---GVCPRLVKLL------- 248 (482)
Q Consensus 188 ~~~--~~~~~~~~~~~L~~-------ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~---~~l~~L~~ll------- 248 (482)
+.. .......-++..+. +..+..+......+.--.... .....+.+... ..+..+..++
T Consensus 963 ~~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~--~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev 1040 (1692)
T KOG1020|consen 963 VPEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKT--MKESVKPVALAKVTHVLNLLTHCLVEKISEV 1040 (1692)
T ss_pred CCcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhh--hhhhhhHHHHhhcchHHHHHHHHHHHHHHhh
Confidence 322 22111222222221 122223333333222111110 00001111111 1122222222
Q ss_pred -----CCCChhh-HHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCC----CchhHHHHHHHHHHHHhc---CCHH
Q 043116 249 -----GHRSRLV-LTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHN----HNKSIKKEVCWIISNITA---GNRE 315 (482)
Q Consensus 249 -----~~~~~~v-~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~----~~~~v~~~a~~~L~nl~~---~~~~ 315 (482)
..++..+ ....+.+|..++.-.|.... ...+-.|...|.+. ....+....+.++-...- ..++
T Consensus 1041 ~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt----~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~se 1116 (1692)
T KOG1020|consen 1041 ESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLT----KKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSE 1116 (1692)
T ss_pred hhHhhhcccchhHHHHHHHHHHHHHhcCchhcc----HHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchH
Confidence 1122233 34456666666664443211 12222233333332 233444444444443332 1111
Q ss_pred HHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcC--CCHHHHHHHHHc--CChHHHHhcCCCC----CHHHHHHH
Q 043116 316 QIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSG--GTHEQIKHLVRE--GCVKPLCDLLPCP----DPQIVTVC 387 (482)
Q Consensus 316 ~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~--~~~~~~~~l~~~--~~l~~L~~ll~~~----~~~v~~~~ 387 (482)
.++. .+=..|+.++..........|..+++.++.. .+....+.+... +.++.+-.-..+. +.....+.
T Consensus 1117 ---sfL~-sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~Rs 1192 (1692)
T KOG1020|consen 1117 ---SFLA-SLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRS 1192 (1692)
T ss_pred ---HHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHH
Confidence 1111 1223455555555566667777788877763 233333332221 1222222221122 22445566
Q ss_pred HHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043116 388 LIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYW 449 (482)
Q Consensus 388 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 449 (482)
+..++-++++++.......+.....+...+ ..+.+..|.-...+.+..++..|..-+..+.
T Consensus 1193 iftlG~l~Ryfdf~~~~~~g~~~~~~~~~~-~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~c 1253 (1692)
T KOG1020|consen 1193 IFTLGLLSRYFDFPKPSNDGKTFLQEGETL-KEKVLILLMYFSKDKDGELRRKALINLGFIC 1253 (1692)
T ss_pred HHHHHHHHHhccCCCccCCCccchhhhhhH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 667777777655543332222222122222 3344555555566666777777777665543
No 135
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.84 E-value=0.00011 Score=54.20 Aligned_cols=95 Identities=17% Similarity=0.247 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCC
Q 043116 298 IKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP 377 (482)
Q Consensus 298 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~ 377 (482)
.|+.+..+|..++.+-+......++ .+++.++..+.++++.+|..|+.+|.|++.....+...++-+ +++.|..+..
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~--IF~~L~kl~~ 78 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNE--IFDALCKLSA 78 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHc
Confidence 3677888888887655555555554 489999999999999999999999999998655544444333 8888999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 043116 378 CPDPQIVTVCLIGLENILK 396 (482)
Q Consensus 378 ~~~~~v~~~~l~~L~~l~~ 396 (482)
++++.|+..| ..|.++++
T Consensus 79 D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred CCchhHHHHH-HHHHHHhc
Confidence 9999988765 67777764
No 136
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.0072 Score=62.84 Aligned_cols=243 Identities=13% Similarity=0.115 Sum_probs=153.1
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhC--CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hhHHHH
Q 043116 75 FVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDH--GAVPIFVKLLASPSDDVREQAVWALGNVAGDSS-RCRDFV 151 (482)
Q Consensus 75 L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~ 151 (482)
+.....+.++..+|..+.++|..++.. +.......+. .+.+.|.+-+++.....+...+.+|..|....+ +....+
T Consensus 658 v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 658 VDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred hhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 334444443379999999999999884 3332211111 244666666777777788888888888874443 333333
Q ss_pred HHhCChHHHHHHHcchhhhhHHHHHHHHHHHhh--cCC----CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 043116 152 LSQGALIPLLAELNEHAKLSMLRTATWTLSNFC--RGK----PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLA 225 (482)
Q Consensus 152 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~--~~~----~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~ 225 (482)
.. .++.++-.+ +..+...++.+..+|..++ ... ...........++.+...+-..........+-++..+.
T Consensus 737 ~k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il 813 (1176)
T KOG1248|consen 737 PK--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL 813 (1176)
T ss_pred HH--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 22 344444444 6667778888888888887 221 12223445666666666555444444444355555555
Q ss_pred cCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHH
Q 043116 226 DGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWI 305 (482)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~ 305 (482)
.........-.-.++++.+..+|.+.+++++..|+..+..++...+...-.-....+++.+..+++.. ...+|..+-..
T Consensus 814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~L 892 (1176)
T KOG1248|consen 814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLL 892 (1176)
T ss_pred HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence 32222222222235667777888999999999999999999987776544333445788888988877 88899888888
Q ss_pred HHHHhc-CCHHHHHHHHH
Q 043116 306 ISNITA-GNREQIQAVID 322 (482)
Q Consensus 306 L~nl~~-~~~~~~~~l~~ 322 (482)
+-.++. ...+.++.+++
T Consensus 893 lekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 893 LEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHHhCHHHHHhhCH
Confidence 888887 45555666665
No 137
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.79 E-value=5.3e-05 Score=49.78 Aligned_cols=55 Identities=24% Similarity=0.296 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHH
Q 043116 253 RLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNI 309 (482)
Q Consensus 253 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl 309 (482)
|.+|..|+++|++++...+..... ....+++.|..+|+++ ++.||..|+|+|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 568999999999998877766554 4457999999999988 779999999999875
No 138
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.76 E-value=0.017 Score=50.06 Aligned_cols=256 Identities=15% Similarity=0.162 Sum_probs=157.0
Q ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH
Q 043116 29 LPTMVAGVWS--DDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT 106 (482)
Q Consensus 29 i~~l~~~l~s--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 106 (482)
+..+.+.|.. ....-++.|+..|+++.... .+..+.+...+++ ...+...+.+|+.+..
T Consensus 5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~------------~i~~i~ka~~d~s-~llkhe~ay~LgQ~~~------ 65 (289)
T KOG0567|consen 5 IETIGNILVNKSQPLQNRFRALFNLRNLLGPA------------AIKAITKAFIDDS-ALLKHELAYVLGQMQD------ 65 (289)
T ss_pred HHHHHHHHcCccHHHHHHHHHHHhhhccCChH------------HHHHHHHhcccch-hhhccchhhhhhhhcc------
Confidence 4445555543 33455677888888887643 1555555555554 5666777888887755
Q ss_pred HHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhh
Q 043116 107 KVAIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFC 184 (482)
Q Consensus 107 ~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~ 184 (482)
...++.|+..+.+ ..+-+|..|..+|+++. .+. .++.+-+.. +++-.++...+..++..+-
T Consensus 66 -----~~Av~~l~~vl~desq~pmvRhEAaealga~~--~~~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle 128 (289)
T KOG0567|consen 66 -----EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG--DPE---------SLEILTKYI-KDPCKEVRETCELAIKRLE 128 (289)
T ss_pred -----chhhHHHHHHhcccccchHHHHHHHHHHHhhc--chh---------hHHHHHHHh-cCCccccchHHHHHHHHHH
Confidence 2467888888775 45778889999999886 222 233333333 4454555555555555554
Q ss_pred cCCCCC-------------ChhhhhhHHHHHHHH-hccCChhH-HHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhC
Q 043116 185 RGKPQP-------------PFNQIRPALRVLAQL-IRSNDEKV-LTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLG 249 (482)
Q Consensus 185 ~~~~~~-------------~~~~~~~~~~~L~~l-l~~~~~~~-~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~ 249 (482)
..+... .......-+.-+-.. +..+.+.. +..+...|+|+.. ++ .+..+..-+.
T Consensus 129 ~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--Ee---------aI~al~~~l~ 197 (289)
T KOG0567|consen 129 WKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--EE---------AINALIDGLA 197 (289)
T ss_pred HhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--HH---------HHHHHHHhcc
Confidence 432100 000112223334333 33333333 4455566666542 11 2456777777
Q ss_pred CCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Q 043116 250 HRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIH-NHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGP 328 (482)
Q Consensus 250 ~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~ 328 (482)
.++.-+|..+..+++.|-. +. .++.+.+.|.. .+++.||.+|+.+|+.++. ++ .++.
T Consensus 198 ~~SalfrhEvAfVfGQl~s--~~---------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~---------~~~v 255 (289)
T KOG0567|consen 198 DDSALFRHEVAFVFGQLQS--PA---------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD--ED---------CVEV 255 (289)
T ss_pred cchHHHHHHHHHHHhhccc--hh---------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HH---------HHHH
Confidence 7888899999999998864 22 35566666644 4488999999999999864 44 5566
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhhc
Q 043116 329 IVNLLQDAEFGTKKEAAWVISNATS 353 (482)
Q Consensus 329 L~~ll~~~~~~~~~~a~~aL~~l~~ 353 (482)
|.+++.++++-+++.+..+|..+-.
T Consensus 256 L~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 256 LKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 6777788888888888888876543
No 139
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.72 E-value=0.011 Score=57.75 Aligned_cols=297 Identities=13% Similarity=0.119 Sum_probs=154.7
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 043116 72 VPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151 (482)
Q Consensus 72 ~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 151 (482)
...++...+ ++ ...+..|+..+.....+-|+..+. .+..+++++.+++..+|..|+..|..+|.+.+.....+
T Consensus 25 y~~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv 97 (556)
T PF05918_consen 25 YKEILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV 97 (556)
T ss_dssp HHHHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH
T ss_pred HHHHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH
Confidence 344555555 35 789999999999999998988764 46889999999999999999999999998877654444
Q ss_pred HHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc---cCChhHHHHHHHHHHH-hccC
Q 043116 152 LSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR---SNDEKVLTDACRALAY-LADG 227 (482)
Q Consensus 152 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~---~~~~~~~~~~l~~L~~-l~~~ 227 (482)
...|.++| ..++..-...+-.+|..+...++ .+.+..+...+. +.++.+++.++..|.. +..-
T Consensus 98 -----aDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l 164 (556)
T PF05918_consen 98 -----ADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPL 164 (556)
T ss_dssp -----HHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS
T ss_pred -----HHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhC
Confidence 45778888 56666666666677777666543 455555555554 5678899999887753 2211
Q ss_pred CcHHHH--HHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC----ChhhHHHHHhcCchHHHHHHh------cCCCc
Q 043116 228 TNDKIQ--AVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTG----DDFQTQCIINCGALRYLLGLL------IHNHN 295 (482)
Q Consensus 228 ~~~~~~--~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~~~l~~~~~i~~L~~ll------~~~~~ 295 (482)
..+... .-.+.-++..+.+.|.+-...--...+.+|..+-.. .....+.+ ++.+.+.. ... +
T Consensus 165 ~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeL-----v~ii~eQa~Ld~~f~~s-D 238 (556)
T PF05918_consen 165 KPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQEL-----VDIIEEQADLDQPFDPS-D 238 (556)
T ss_dssp -TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHH-----HHHHHHHHTTTS---SS-S
T ss_pred cHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHH-----HHHHHHHhccCCCCCCc-C
Confidence 111111 112223445666777654433333344555555431 22222322 22233222 112 3
Q ss_pred hhHHHHHHHHHHH----Hhc--CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCCh
Q 043116 296 KSIKKEVCWIISN----ITA--GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCV 369 (482)
Q Consensus 296 ~~v~~~a~~~L~n----l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l 369 (482)
++.-.....++.. ++. .+...+.++.+ .++|.+-++ +.+.+...+.++..++.+........++. -++
T Consensus 239 ~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L~-~i~ 312 (556)
T PF05918_consen 239 PESIDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLLP-SIF 312 (556)
T ss_dssp HHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT----THHHHHH-HHH
T ss_pred HHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHHH-HHH
Confidence 3333333333322 122 24444444444 477766555 45677788888888887654333333221 133
Q ss_pred HHHHhcCCC--CCH----HHHHHHHHHHHHHHHhchh
Q 043116 370 KPLCDLLPC--PDP----QIVTVCLIGLENILKVGEA 400 (482)
Q Consensus 370 ~~L~~ll~~--~~~----~v~~~~l~~L~~l~~~~~~ 400 (482)
..|...+-. ..+ ..++..+.++..+....+.
T Consensus 313 ~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~ 349 (556)
T PF05918_consen 313 QLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPN 349 (556)
T ss_dssp HHHHTTS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred HHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence 334333322 222 3566777777777766554
No 140
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.00024 Score=66.04 Aligned_cols=301 Identities=14% Similarity=0.119 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-----CChhhHHHHHHhCChHHH
Q 043116 86 QLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAG-----DSSRCRDFVLSQGALIPL 160 (482)
Q Consensus 86 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-----~~~~~~~~~~~~~~i~~l 160 (482)
.+|.++..+|..++.+-.-.+..+++ +...+...+-+..+.++..+..++..+-. ..|...+.-...+.+..+
T Consensus 270 ~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~ 347 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM 347 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence 46667777777776633333333332 33445555667888999988888877642 222211111111211111
Q ss_pred ------HHHHcchhhhhHHHHHHHHHHHhhcCC-CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHH
Q 043116 161 ------LAELNEHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQ 233 (482)
Q Consensus 161 ------~~~l~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~ 233 (482)
-....+......+...|.+++++.... .......-...+-.+..+-++.+.-++..+++++.-+.-+..-...
T Consensus 348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d 427 (728)
T KOG4535|consen 348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQD 427 (728)
T ss_pred HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhh
Confidence 112222334456667777888777653 1111111111111122222334455777888888777766554444
Q ss_pred HHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC----Chh---hHHHHHhcCchHHHHHHh--cCCCchhHHHHHHH
Q 043116 234 AVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTG----DDF---QTQCIINCGALRYLLGLL--IHNHNKSIKKEVCW 304 (482)
Q Consensus 234 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~---~~~~l~~~~~i~~L~~ll--~~~~~~~v~~~a~~ 304 (482)
...-......+...+.+..-..|..++|+++|+... .+. ....+.. -.+..++..- .+..+.+|+..+..
T Consensus 428 ~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navr 506 (728)
T KOG4535|consen 428 VIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVR 506 (728)
T ss_pred HHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 444445566677777777777999999999999742 221 2222211 1223333222 22326789999999
Q ss_pred HHHHHhcCCHHHHHHHHHc-------CChHHHHHH-HhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcC
Q 043116 305 IISNITAGNREQIQAVIDA-------GLIGPIVNL-LQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLL 376 (482)
Q Consensus 305 ~L~nl~~~~~~~~~~l~~~-------~~i~~L~~l-l~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll 376 (482)
+|+|+..- .+.+.+. +-+..+..- .-.....++-++|++++|+..+..-.....=....+++.|..++
T Consensus 507 aLgnllQv----lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv 582 (728)
T KOG4535|consen 507 ALGNLLQF----LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLV 582 (728)
T ss_pred HHhhHHHH----HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHH
Confidence 99999741 2222221 112222211 12456789999999999999864321100001112466666665
Q ss_pred C-CCCHHHHHHHHHHHHH
Q 043116 377 P-CPDPQIVTVCLIGLEN 393 (482)
Q Consensus 377 ~-~~~~~v~~~~l~~L~~ 393 (482)
. ..|-+|+.++..+|..
T Consensus 583 ~~~~NFKVRi~AA~aL~v 600 (728)
T KOG4535|consen 583 TSCKNFKVRIRAAAALSV 600 (728)
T ss_pred HHhccceEeehhhhhhcC
Confidence 4 4566666666655543
No 141
>PRK14707 hypothetical protein; Provisional
Probab=97.69 E-value=0.089 Score=58.37 Aligned_cols=402 Identities=16% Similarity=0.062 Sum_probs=228.7
Q ss_pred cHHHHHHHhc--CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh
Q 043116 28 ILPTMVAGVW--SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN 105 (482)
Q Consensus 28 ~i~~l~~~l~--s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~ 105 (482)
.+..+++.++ .++...+..+...-..++.. ....+.+-..|+...|-.+-+=+++++.+..+...-..++. ....
T Consensus 164 ~~~lllNafSKw~~~~~c~~aa~~la~~~~~~--d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~-~~~l 240 (2710)
T PRK14707 164 NISLALNAFSKWSDNPDCQAVAPRFAALVASD--DRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLAD-ESRL 240 (2710)
T ss_pred cHHHHHHHhhcCCCCchHHHHHHHHHHHhcCC--hhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-cHHH
Confidence 4666777775 45666666555555555544 23344444444444444444555547777666555555655 5566
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhc
Q 043116 106 TKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCR 185 (482)
Q Consensus 106 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~ 185 (482)
+..+-..|+-..|-.+-+=++......++..+..=..+.+..++.+-. ..+...++-+.+-.+..+-..+...|..=..
T Consensus 241 ~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~-q~vanalNalSKwpd~~vc~~Aa~~la~rl~ 319 (2710)
T PRK14707 241 RNELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDP-INVTQALNALSKWADLPVCAEAAIALAERLA 319 (2710)
T ss_pred HHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCH-HHHHHHHhhhhcCCCchHHHHHHHHHHHHHh
Confidence 666655555555555555456555555555555433344555444322 2355566666677777777776665554444
Q ss_pred CCCCCChhhh-hhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHh
Q 043116 186 GKPQPPFNQI-RPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIG 264 (482)
Q Consensus 186 ~~~~~~~~~~-~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 264 (482)
+++....... .++-..|..+-+-++..+-..+..+|..=...+++..+.+--.|+-..|-.+-+=++..+...+...|.
T Consensus 320 ~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA 399 (2710)
T PRK14707 320 DDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALA 399 (2710)
T ss_pred ccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHH
Confidence 4443333333 344444555555666666666666665433344444444443444444444445577777777777776
Q ss_pred HhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHH
Q 043116 265 NIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEA 344 (482)
Q Consensus 265 ~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a 344 (482)
.=..++++..+.+-..|+-..|-.+-+.+ +..+...++..|.--..++.+..+.+-..++...|-.+-+-+|..+...+
T Consensus 400 ~~l~~d~~l~~~~~~Q~van~lnalsKWP-d~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~a 478 (2710)
T PRK14707 400 EHVVDDLELRKGLDPQGVSNALNALAKWP-DLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQT 478 (2710)
T ss_pred HHhccChhhhhhcchhhHHHHHHHhhcCC-cchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHH
Confidence 65555666655444444444444455556 77788888888887777777766655555555555555566788888888
Q ss_pred HHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHH
Q 043116 345 AWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLE 424 (482)
Q Consensus 345 ~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 424 (482)
+..|..=... +++.++.+--.++...|-.+-+.++......++..|..=+-.. ......|...+...
T Consensus 479 a~~La~~l~~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~------------~~l~~~~~~~~~~~ 545 (2710)
T PRK14707 479 ASALAARLAH-ERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDE------------LQLRKAFDAHQVVN 545 (2710)
T ss_pred HHHHHHHhcc-cHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccc------------hhhhhhhhhHHHHH
Confidence 8877766654 5566666666677777888888888765444443332222111 12244444455556
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHH
Q 043116 425 KIENLQSHDNNDIHEMSVKILET 447 (482)
Q Consensus 425 ~l~~l~~~~~~~v~~~a~~~l~~ 447 (482)
.+..+..++....-+.+..-|..
T Consensus 546 ~lnalSKwp~s~~C~~A~~~iA~ 568 (2710)
T PRK14707 546 TLKALSKWPDKQLCAVAASGLAE 568 (2710)
T ss_pred HHHhhhcCCchhHHHHHHHHHHH
Confidence 66666666655554444444443
No 142
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.0071 Score=60.03 Aligned_cols=141 Identities=11% Similarity=0.133 Sum_probs=81.7
Q ss_pred hhHHHHHHHHhcc-CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhH
Q 043116 196 RPALRVLAQLIRS-NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQT 274 (482)
Q Consensus 196 ~~~~~~L~~ll~~-~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 274 (482)
...++.|..+|.. +.-+.......++..+....++... .++..|+..+.+.. ...-+.++|+-+....+..
T Consensus 390 ~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a- 461 (865)
T KOG1078|consen 390 TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKA- 461 (865)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCC-
Confidence 4555666666654 3456666777777766654443322 23455555553322 3333444444444433221
Q ss_pred HHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhh
Q 043116 275 QCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNAT 352 (482)
Q Consensus 275 ~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~ 352 (482)
......+..+....--. +..+|..|..++.++...++.. ...+...|.+.+.+.+.+++..|..++.++.
T Consensus 462 --~~Pskyir~iyNRviLE-n~ivRaaAv~alaKfg~~~~~l-----~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 462 --PNPSKYIRFIYNRVILE-NAIVRAAAVSALAKFGAQDVVL-----LPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred --CCcchhhHHHhhhhhhh-hhhhHHHHHHHHHHHhcCCCCc-----cccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 11123445555555445 7788999999999988543331 2235556777778888999999998888886
No 143
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.67 E-value=0.0041 Score=62.74 Aligned_cols=157 Identities=12% Similarity=0.094 Sum_probs=115.4
Q ss_pred HHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChh
Q 043116 175 TATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRL 254 (482)
Q Consensus 175 ~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 254 (482)
..=.+++.++.+.+ +...+|-+++...+.|.+++.-+-.-+.+.++..++..-. .+..+.+=+.++++.
T Consensus 39 AmK~iIa~M~~G~d------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL-----avNti~kDl~d~N~~ 107 (757)
T COG5096 39 AMKKIIAQMSLGED------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL-----AVNTIQKDLQDPNEE 107 (757)
T ss_pred HHHHHHHHHhcCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH-----HHHHHHhhccCCCHH
Confidence 34455666666543 4566777777777888888888888888888777743321 245667777888999
Q ss_pred hHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 043116 255 VLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ 334 (482)
Q Consensus 255 v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~ 334 (482)
+|..|+++++.+-. ++... .+++.+.+.+.++ ++.||+.|+.++..+-.-+++ .+.+.|.+..+..++.
T Consensus 108 iR~~AlR~ls~l~~--~el~~-----~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld~~---l~~~~g~~~~l~~l~~ 176 (757)
T COG5096 108 IRGFALRTLSLLRV--KELLG-----NIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLDKD---LYHELGLIDILKELVA 176 (757)
T ss_pred HHHHHHHHHHhcCh--HHHHH-----HHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcCHh---hhhcccHHHHHHHHhh
Confidence 99999998886632 22222 4677888999988 889999999999998765544 4446778888888888
Q ss_pred cCChhHHHHHHHHHHHhhc
Q 043116 335 DAEFGTKKEAAWVISNATS 353 (482)
Q Consensus 335 ~~~~~~~~~a~~aL~~l~~ 353 (482)
+.+|.+..+|..++..+-.
T Consensus 177 D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 177 DSDPIVIANALASLAEIDP 195 (757)
T ss_pred CCCchHHHHHHHHHHHhch
Confidence 8899999999888887754
No 144
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.66 E-value=0.00043 Score=64.44 Aligned_cols=274 Identities=20% Similarity=0.174 Sum_probs=149.6
Q ss_pred HhcCCCHHHHHHHHHHHHHHhcCC----CCCcHHHHHhcCCHHHHHH-------hhcCCCChHHHHHHHHHHHHHhCCCh
Q 043116 35 GVWSDDNKVQLEATTLFRKMLSFD----RNSPIEKVIQSGVVPRFVE-------FLMREDYPQLQFEAARALTNIASGTS 103 (482)
Q Consensus 35 ~l~s~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~g~~~~L~~-------ll~~~~~~~v~~~a~~~L~~l~~~~~ 103 (482)
.+...+|+++..++..+.++...- .++..+.-...|-+-.+.- .-.+.. +..+..++..+.++.....
T Consensus 303 ~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~-~Tl~~s~Cdals~i~~~~f 381 (728)
T KOG4535|consen 303 CMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEH-PTLQASACDALSSILPEAF 381 (728)
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcC-CCchhHHHHHHhhcCchhh
Confidence 344667999999999998877542 1222222222222222111 112223 4567777888888765221
Q ss_pred HhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116 104 ENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF 183 (482)
Q Consensus 104 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L 183 (482)
+.-..-.+...+..+..+-.+++.-++..|+++++-+.-+.....+...-......++..+ .+..-..+..+.|+++|+
T Consensus 382 ~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl-~d~~ln~r~KaawtlgnI 460 (728)
T KOG4535|consen 382 SNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSL-EDKSLNVRAKAAWSLGNI 460 (728)
T ss_pred cCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHh-hhHhHhHHHHHHHHhhhh
Confidence 1100000001111222222334445677788888877755443333333333455555555 444556788999999999
Q ss_pred hcC----CCCCChhhhh---hHHHHHHHHhc---cCChhHHHHHHHHHHHhccCCcHHH----HHHHHhCcHHHHHHh-h
Q 043116 184 CRG----KPQPPFNQIR---PALRVLAQLIR---SNDEKVLTDACRALAYLADGTNDKI----QAVIEAGVCPRLVKL-L 248 (482)
Q Consensus 184 ~~~----~~~~~~~~~~---~~~~~L~~ll~---~~~~~~~~~~l~~L~~l~~~~~~~~----~~~~~~~~l~~L~~l-l 248 (482)
+.. .|........ ..+..+...-. ..+..++..+.++|+|+...-+... ..+.+ +-+..+... .
T Consensus 461 TdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~-~~~~~l~~~v~ 539 (728)
T KOG4535|consen 461 TDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIE-ESIQALISTVL 539 (728)
T ss_pred HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHH-HHHHhccccee
Confidence 863 2443333221 22223332221 2457899999999999885322111 11111 222222222 2
Q ss_pred CCCChhhHHHHHHHHhHhhcCChh-hHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 043116 249 GHRSRLVLTAALRTIGNIVTGDDF-QTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA 311 (482)
Q Consensus 249 ~~~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 311 (482)
....-+|+.++|++++|+..+..- ....-....+++.|..++.+..+.+||..|+.+|..-..
T Consensus 540 ~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 540 TEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred cccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 234567999999999999974322 122222335678888888877689999999999987654
No 145
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.63 E-value=0.0033 Score=50.49 Aligned_cols=130 Identities=14% Similarity=0.127 Sum_probs=103.6
Q ss_pred HHHHHhCcHHHHHHhhCCCC------hhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCC-chhHHHHHHHH
Q 043116 233 QAVIEAGVCPRLVKLLGHRS------RLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNH-NKSIKKEVCWI 305 (482)
Q Consensus 233 ~~~~~~~~l~~L~~ll~~~~------~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~~v~~~a~~~ 305 (482)
..++..+++..|++++.++. .++...++.++..|..+. ......+...++..+...+.... +..+...+...
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 35677788999999997654 367788899999988854 33345666678888998888764 68899999999
Q ss_pred HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHH
Q 043116 306 ISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHL 363 (482)
Q Consensus 306 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l 363 (482)
|-+++..++...+.+.+.--++.|+..++..+++++.+++..+..+..++++..++.+
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i 141 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI 141 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 9999988777665555655699999999999999999999999999988777665543
No 146
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=0.072 Score=55.82 Aligned_cols=234 Identities=13% Similarity=0.050 Sum_probs=142.6
Q ss_pred HHHHHcchhhhhHHHHHHHHHHHhhcCCCC--CChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHH
Q 043116 160 LLAELNEHAKLSMLRTATWTLSNFCRGKPQ--PPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIE 237 (482)
Q Consensus 160 l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~--~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~ 237 (482)
+.....++.+..++..+...|..++...+. ........+...+.+-+++.....+...+.||..+....+.....++.
T Consensus 658 v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~ 737 (1176)
T KOG1248|consen 658 VDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP 737 (1176)
T ss_pred hhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 344444555778999999999999988322 122233566777777788888888999999998888665522222333
Q ss_pred hCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcC------chHHHHHHhcCCC---chhHHHHHHHHHHH
Q 043116 238 AGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCG------ALRYLLGLLIHNH---NKSIKKEVCWIISN 308 (482)
Q Consensus 238 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~------~i~~L~~ll~~~~---~~~v~~~a~~~L~n 308 (482)
.-+.+.++.+ ++.+..-++.+..+|..++. .....+.| .+..++..+.-+. ...+......++..
T Consensus 738 k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~ 811 (1176)
T KOG1248|consen 738 KLIPEVILSL-KEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITH 811 (1176)
T ss_pred HHHHHHHHhc-ccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHH
Confidence 3333444444 77788888888888888873 11111111 3333443333221 22222222333333
Q ss_pred HhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHH
Q 043116 309 ITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCL 388 (482)
Q Consensus 309 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l 388 (482)
+..........-.-.+++..+.-++.+..+++++.|+..+.-++..-+...... ....+++.+..+.++....++.++-
T Consensus 812 il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~-~~~~LL~sll~ls~d~k~~~r~Kvr 890 (1176)
T KOG1248|consen 812 ILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSP-HLEELLPSLLALSHDHKIKVRKKVR 890 (1176)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhh-hHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 332111111111112345556666778999999999999999988655444333 2234788888888888889999998
Q ss_pred HHHHHHHHhchh
Q 043116 389 IGLENILKVGEA 400 (482)
Q Consensus 389 ~~L~~l~~~~~~ 400 (482)
..|..+++....
T Consensus 891 ~LlekLirkfg~ 902 (1176)
T KOG1248|consen 891 LLLEKLIRKFGA 902 (1176)
T ss_pred HHHHHHHHHhCH
Confidence 899988876444
No 147
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.58 E-value=0.012 Score=54.52 Aligned_cols=207 Identities=11% Similarity=0.076 Sum_probs=147.6
Q ss_pred HHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChh-----hHHHHHhc--CchHHHHHHhcCCCchhHHHHHHHH
Q 043116 233 QAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDF-----QTQCIINC--GALRYLLGLLIHNHNKSIKKEVCWI 305 (482)
Q Consensus 233 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-----~~~~l~~~--~~i~~L~~ll~~~~~~~v~~~a~~~ 305 (482)
+.++..+.+..|+..|..-+-+.+..+..+.+++.+.... ....+.+. .++..|+...+ ++++.-.+...
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~---~~dial~~g~m 146 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE---NPDIALNCGDM 146 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG---STTTHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc---CccccchHHHH
Confidence 3466778999999999998999999999999999875422 23344332 35555555544 44566666677
Q ss_pred HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHc---CChHHHHhcCCCCCHH
Q 043116 306 ISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVRE---GCVKPLCDLLPCPDPQ 382 (482)
Q Consensus 306 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~---~~l~~L~~ll~~~~~~ 382 (482)
|..++.. +...+.++....+..+.+.++.++.++...|...+..+... .+.....++.. .++..+..++.+++.=
T Consensus 147 lRec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~-hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYv 224 (335)
T PF08569_consen 147 LRECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR-HKKLVAEFLSNNYDRFFQKYNKLLESSNYV 224 (335)
T ss_dssp HHHHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHCT-SSHH
T ss_pred HHHHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHccCCCeE
Confidence 7777654 56677888888999999999999999999999999998775 44444444443 4567888899999999
Q ss_pred HHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 043116 383 IVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGRV 453 (482)
Q Consensus 383 v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 453 (482)
++..+++.|+.++....+.. .....+.+..-+..+-.++.+++..++-.|-.+..-+.....
T Consensus 225 tkrqslkLL~ellldr~n~~---------vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 225 TKRQSLKLLGELLLDRSNFN---------VMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp HHHHHHHHHHHHHHSGGGHH---------HHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred eehhhHHHHHHHHHchhHHH---------HHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCC
Confidence 99999999999997655532 123344455567778888999999999999998886665543
No 148
>PRK14707 hypothetical protein; Provisional
Probab=97.56 E-value=0.19 Score=56.00 Aligned_cols=387 Identities=17% Similarity=0.112 Sum_probs=223.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhc-CCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHH
Q 043116 41 NKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLM-REDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFV 119 (482)
Q Consensus 41 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 119 (482)
......++++=..+...+ ..+..+- .--+..+++.++ -+++.+.+..+......++. .+..+..+-.. .|..++
T Consensus 137 ~~c~~a~a~i~~~~~~~~--~~~~~l~-~~~~~lllNafSKw~~~~~c~~aa~~la~~~~~-~d~~~~~~~~q-~ia~~l 211 (2710)
T PRK14707 137 GRCERAVARLARHLRRED--KARQTLN-AQNISLALNAFSKWSDNPDCQAVAPRFAALVAS-DDRLRSAMDAQ-GVATVL 211 (2710)
T ss_pred hHHHHHHHHHHHHhcccc--chhhhhc-cccHHHHHHHhhcCCCCchHHHHHHHHHHHhcC-ChhhhcccchH-HHHHHH
Confidence 444555555555554432 2222221 223444555443 44446777777777677766 45555555443 444445
Q ss_pred HhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhh-h
Q 043116 120 KLLAS--PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQI-R 196 (482)
Q Consensus 120 ~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~-~ 196 (482)
..++. +++.-+. +...|.....+....+..+- ...+...++-+.+-++...-..++..+..=....+....... .
T Consensus 212 Na~sKWp~~~~c~~-aa~~la~~l~~~~~l~~~~~-~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q 289 (2710)
T PRK14707 212 NALCKWPDTPDCGN-AVSALAERLADESRLRNELK-PQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPI 289 (2710)
T ss_pred HHHhcCCCChhHHH-HHHHHHHHHcCcHHHHHhCC-hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHH
Confidence 54442 4444444 44444444334444444433 334666677776667776776666555543333333333322 3
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHH
Q 043116 197 PALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQC 276 (482)
Q Consensus 197 ~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 276 (482)
++-..|..+-+.++..+-..+...|..=.-++.+..+.+-..++-..|-.+-+=++..+...+...|..=...++...+.
T Consensus 290 ~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~ 369 (2710)
T PRK14707 290 NVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKD 369 (2710)
T ss_pred HHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcc
Confidence 44444555556677777666666665433334444333322233333333334466666666666665554545555443
Q ss_pred HHhcCchHHHHHHh-cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCC
Q 043116 277 IINCGALRYLLGLL-IHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGG 355 (482)
Q Consensus 277 l~~~~~i~~L~~ll-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~ 355 (482)
++..++..+++-+ +.+ +..+...|+..|..-..++++..+.+-..|+-..|-.+-+-++..+...++.+|.--..+
T Consensus 370 -l~~q~~a~~lNalsKWp-~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~- 446 (2710)
T PRK14707 370 -LEPQGVSSVLNALSKWP-DTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAH- 446 (2710)
T ss_pred -cchhHHHHHHhhhhcCC-CchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhc-
Confidence 3344455555544 445 777888888888777777788666666666666666666678889999999998887765
Q ss_pred CHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCH
Q 043116 356 THEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNN 435 (482)
Q Consensus 356 ~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~ 435 (482)
+.+.++.+--.++...|-.+-+.+|..+...+.+.|..-+..... .++-|.-.+....|..|..-++.
T Consensus 447 d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~------------l~~a~~~q~~~~~L~aLSK~Pd~ 514 (2710)
T PRK14707 447 DTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHERR------------LRKALKPQEVVIALHSLSKWPDT 514 (2710)
T ss_pred cHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHH------------HHhhcCHHHHHHHHHHhhcCCCc
Confidence 677777767777777777788899998887777766655543322 35556666777788888877776
Q ss_pred HHHHHH-HHHHHHhc
Q 043116 436 DIHEMS-VKILETYW 449 (482)
Q Consensus 436 ~v~~~a-~~~l~~~~ 449 (482)
.....| .++..+..
T Consensus 515 ~~c~~A~~~lA~rl~ 529 (2710)
T PRK14707 515 PICAEAASALAERVV 529 (2710)
T ss_pred HHHHHHHHHHHHHhc
Confidence 665444 44444443
No 149
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.55 E-value=0.022 Score=49.36 Aligned_cols=257 Identities=18% Similarity=0.213 Sum_probs=160.8
Q ss_pred HHHHHHhhcCCCC-hHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 043116 72 VPRFVEFLMREDY-PQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDF 150 (482)
Q Consensus 72 ~~~L~~ll~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 150 (482)
+..+.+.|..... ..-+..|+..|.++.. + +.+..+.+...+++...+.....+|+.....
T Consensus 5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~--~---------~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~------- 66 (289)
T KOG0567|consen 5 IETIGNILVNKSQPLQNRFRALFNLRNLLG--P---------AAIKAITKAFIDDSALLKHELAYVLGQMQDE------- 66 (289)
T ss_pred HHHHHHHHcCccHHHHHHHHHHHhhhccCC--h---------HHHHHHHHhcccchhhhccchhhhhhhhccc-------
Confidence 3445555554331 2334555555555544 1 2367777777777777777888888877522
Q ss_pred HHHhCChHHHHHHHcchh-hhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCc
Q 043116 151 VLSQGALIPLLAELNEHA-KLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTN 229 (482)
Q Consensus 151 ~~~~~~i~~l~~~l~~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~ 229 (482)
..++.+...+.... .+-++..|..+|..+. . ...++.+-+..+++-..++..+..++..+-..+.
T Consensus 67 ----~Av~~l~~vl~desq~pmvRhEAaealga~~-~---------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~ 132 (289)
T KOG0567|consen 67 ----DAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D---------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDI 132 (289)
T ss_pred ----hhhHHHHHHhcccccchHHHHHHHHHHHhhc-c---------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhc
Confidence 25778888885433 4556677999998877 2 3566777777777777888888777776652211
Q ss_pred HHH----HHH--H------HhCcHHHHHHhhCCCC-hh-hHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCc
Q 043116 230 DKI----QAV--I------EAGVCPRLVKLLGHRS-RL-VLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHN 295 (482)
Q Consensus 230 ~~~----~~~--~------~~~~l~~L~~ll~~~~-~~-v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 295 (482)
-.. ... . ..+-+..+-..+.+.+ +. -|..+.+.|.|+-. ++ .+..+++-+..+ +
T Consensus 133 ~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--Ee---------aI~al~~~l~~~-S 200 (289)
T KOG0567|consen 133 IDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--EE---------AINALIDGLADD-S 200 (289)
T ss_pred cccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--HH---------HHHHHHHhcccc-h
Confidence 000 000 0 0111233333332222 11 23445555554421 22 344566777777 8
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh--cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHH
Q 043116 296 KSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ--DAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLC 373 (482)
Q Consensus 296 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~--~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~ 373 (482)
.-.|.+++++++.+-+ +. .++.|.+.|. .+++.+|..|+.||+.++. ++ +++.|.
T Consensus 201 alfrhEvAfVfGQl~s--~~---------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~---e~---------~~~vL~ 257 (289)
T KOG0567|consen 201 ALFRHEVAFVFGQLQS--PA---------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD---ED---------CVEVLK 257 (289)
T ss_pred HHHHHHHHHHHhhccc--hh---------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC---HH---------HHHHHH
Confidence 8899999999999854 33 5666666665 4689999999999999875 22 578888
Q ss_pred hcCCCCCHHHHHHHHHHHHHHH
Q 043116 374 DLLPCPDPQIVTVCLIGLENIL 395 (482)
Q Consensus 374 ~ll~~~~~~v~~~~l~~L~~l~ 395 (482)
+.++++++-|++.|..+|.-+-
T Consensus 258 e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 258 EYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHHHH
Confidence 8999888888888887777654
No 150
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.52 E-value=0.043 Score=50.52 Aligned_cols=198 Identities=13% Similarity=0.113 Sum_probs=126.9
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHH--hCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC--ChhhH
Q 043116 199 LRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIE--AGVCPRLVKLLGHRSRLVLTAALRTIGNIVTG--DDFQT 274 (482)
Q Consensus 199 ~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~--~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~ 274 (482)
+.-.+..+.......|..++..+.++...... .+.+.+ .-++..+.+.++.+..+-+..|+++++-++-. .....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 33444555666788999999999888754321 122222 24677888888887766677787777777654 22333
Q ss_pred HHHHhcCchHHHHHHhcCCC-chhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHH--Hh----------cCCh
Q 043116 275 QCIINCGALRYLLGLLIHNH-NKSIKKEVCWIISNITA---GNREQIQAVIDAGLIGPIVNL--LQ----------DAEF 338 (482)
Q Consensus 275 ~~l~~~~~i~~L~~ll~~~~-~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~l--l~----------~~~~ 338 (482)
..+++ .+.|.|...+.++. ...+|..++.+|+-++. ..++.....++ .+..+... .+ .+++
T Consensus 124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence 44444 47788888888763 34566666666666654 33443332222 22222111 11 1235
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhc
Q 043116 339 GTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAE 401 (482)
Q Consensus 339 ~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~ 401 (482)
.+...|+.+.+-++...+........ ...++.|..+|++++.+|+..|-.+|.-+++.....
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~ 262 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYELARDH 262 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 68888998888887765554444322 346999999999999999999999999999877653
No 151
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.52 E-value=0.078 Score=49.14 Aligned_cols=225 Identities=8% Similarity=0.090 Sum_probs=157.4
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcH-----HHHHHHHh--CcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 043116 196 RPALRVLAQLIRSNDEKVLTDACRALAYLADGTND-----KIQAVIEA--GVCPRLVKLLGHRSRLVLTAALRTIGNIVT 268 (482)
Q Consensus 196 ~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~-----~~~~~~~~--~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 268 (482)
.+++..|+..|..-+-+.+..+.....++...... ..+.+... .++..|+..- +++++...+-..|..++.
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k 152 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIK 152 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTT
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHh
Confidence 57788888888888889999999999888855322 23333332 3444444433 456677777777777776
Q ss_pred CChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC---ChHHHHHHHhcCChhHHHHHH
Q 043116 269 GDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAG---LIGPIVNLLQDAEFGTKKEAA 345 (482)
Q Consensus 269 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~---~i~~L~~ll~~~~~~~~~~a~ 345 (482)
.+...+.++....+..+.+.++.+ +-++...|..++..+....+.....++..+ ++.....++.+++.-+++.++
T Consensus 153 -~e~l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl 230 (335)
T PF08569_consen 153 -HESLAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL 230 (335)
T ss_dssp -SHHHHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred -hHHHHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence 566677888888888999999998 999999999999998876677667777543 577888888999999999999
Q ss_pred HHHHHhhcCCCHHH--HHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHh--c
Q 043116 346 WVISNATSGGTHEQ--IKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEA--E 421 (482)
Q Consensus 346 ~aL~~l~~~~~~~~--~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~ 421 (482)
..|+.+........ .+++.+..-+..++.++.++...++..|.-++.-+.....+ +.++...+... .
T Consensus 231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K---------~~~I~~iL~~Nr~k 301 (335)
T PF08569_consen 231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK---------PPPIVDILIKNREK 301 (335)
T ss_dssp HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS----------BHHHHHHHHHTHHH
T ss_pred HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC---------ChHHHHHHHHHHHH
Confidence 99999987432222 34444556688999999999999999999888877754333 33456655444 3
Q ss_pred hHHHHHHhhcCC
Q 043116 422 GLEKIENLQSHD 433 (482)
Q Consensus 422 ~~~~l~~l~~~~ 433 (482)
.++.+.+...+.
T Consensus 302 Ll~fl~~f~~~~ 313 (335)
T PF08569_consen 302 LLRFLKDFHTDR 313 (335)
T ss_dssp HHHHHHTTTTT-
T ss_pred HHHHHHhCCCCC
Confidence 566666666555
No 152
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.50 E-value=0.0018 Score=65.23 Aligned_cols=189 Identities=17% Similarity=0.153 Sum_probs=130.0
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh-------------HHHHHHhCChHHHHHHHcchhhhhHHHHHHHHH
Q 043116 114 AVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC-------------RDFVLSQGALIPLLAELNEHAKLSMLRTATWTL 180 (482)
Q Consensus 114 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-------------~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L 180 (482)
+...|+.+|++ +++-..+..++.-+..+.+.. |+.+. ..++|.+.+.+. ..+...+.....+|
T Consensus 816 ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~-t~~~~~K~~yl~~L 891 (1030)
T KOG1967|consen 816 IAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFE-TAPGSQKHNYLEAL 891 (1030)
T ss_pred HHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhc-cCCccchhHHHHHH
Confidence 34566777765 344455666666665544332 22222 246788888884 55566777788888
Q ss_pred HHhhcCCCCCC-hhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCC---hhhH
Q 043116 181 SNFCRGKPQPP-FNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRS---RLVL 256 (482)
Q Consensus 181 ~~L~~~~~~~~-~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~---~~v~ 256 (482)
+++...-|... ......++|.|++.|.-+|..++...+.++.-+...........+ .-+++.++.+-++++ ..+|
T Consensus 892 shVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR 970 (1030)
T KOG1967|consen 892 SHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLSSDNDNNMMVVR 970 (1030)
T ss_pred HHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcCCCCCcchhHHH
Confidence 88888655422 223468899999999999999999999999877755443322222 245677777766655 4699
Q ss_pred HHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHH
Q 043116 257 TAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISN 308 (482)
Q Consensus 257 ~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~n 308 (482)
..|+.+|..+.+..|...-......++..+.+.|.++ ..-||++|..+=.+
T Consensus 971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQN 1021 (1030)
T ss_pred HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhh
Confidence 9999999999986665444455567889999999998 88899998866444
No 153
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.50 E-value=0.00033 Score=42.62 Aligned_cols=39 Identities=36% Similarity=0.732 Sum_probs=35.8
Q ss_pred hHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 043116 103 SENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVA 141 (482)
Q Consensus 103 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 141 (482)
++.+..+.+.|+++.|++++.++++.++..++|+|.|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 347788899999999999999999999999999999996
No 154
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.49 E-value=0.0021 Score=63.92 Aligned_cols=240 Identities=14% Similarity=0.080 Sum_probs=155.9
Q ss_pred hHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCC-hhHHHHHHHHHHHhc
Q 043116 147 CRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSND-EKVLTDACRALAYLA 225 (482)
Q Consensus 147 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~~~~~~l~~L~~l~ 225 (482)
-+...++.|+...++++.. ...+........+|.. .-..........++.+.+.++... .--....+.++.|++
T Consensus 496 ~~~~~Ik~~~~~aLlrl~~-~q~e~akl~~~~aL~~----~i~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnLa 570 (748)
T KOG4151|consen 496 ERAKKIKPGGYEALLRLGQ-QQFEEAKLKWYHALAG----KIDFPGERSYEVVKPLDSALHNDEKGLENFEALEALTNLA 570 (748)
T ss_pred hcCccccccHHHHHHHHHH-HhchHHHHHHHHHHhh----hcCCCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhccc
Confidence 3445667788999999884 4444555555666651 111111222455555555555332 223455788899999
Q ss_pred cCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHh-cCchHHHHHHhcCCCchhHHHHHHH
Q 043116 226 DGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIIN-CGALRYLLGLLIHNHNKSIKKEVCW 304 (482)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~~v~~~a~~ 304 (482)
..++...+.+.+...++.+-.++...++..+..++.++.||.-+..-..+.+.+ ....+.....+... +.....+++.
T Consensus 571 s~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a~ 649 (748)
T KOG4151|consen 571 SISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGAG 649 (748)
T ss_pred CcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhccc
Confidence 877766666888777777777888899999999999999999877666666776 34555555566554 7778888888
Q ss_pred HHHHHhcCCHHHHHHHH-HcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHH
Q 043116 305 IISNITAGNREQIQAVI-DAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQI 383 (482)
Q Consensus 305 ~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v 383 (482)
++..+..-...++.... -......+..++.+++++++......+.|+.. ...+....+.....++.+...-.-.-...
T Consensus 650 a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~-~~~ei~~~~~~~~~~~~l~~~~~~~~a~~ 728 (748)
T KOG4151|consen 650 ALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE-ALFEIAEKIFETEVMELLSGLQKLNRAPK 728 (748)
T ss_pred cccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH-HHHHHHHHhccchHHHHHHHHHHhhhhhh
Confidence 88867664444444222 24577788888899999999999999999543 45556666666665655555443322233
Q ss_pred HHHHHHHHHH
Q 043116 384 VTVCLIGLEN 393 (482)
Q Consensus 384 ~~~~l~~L~~ 393 (482)
+..+-.+|..
T Consensus 729 ~~~~~~~l~~ 738 (748)
T KOG4151|consen 729 REDAAPCLSA 738 (748)
T ss_pred hhhhhhHHHH
Confidence 3333333333
No 155
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.48 E-value=0.0057 Score=51.49 Aligned_cols=93 Identities=23% Similarity=0.251 Sum_probs=74.6
Q ss_pred ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHH
Q 043116 210 DEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGL 289 (482)
Q Consensus 210 ~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~l 289 (482)
++.++..++.+++-++...+...+ ..++.+...|.++++.+|..|+.+|..|...+.-..+ ..++..++..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHH
Confidence 578999999999999976664443 4578999999999999999999999999874332211 2234778888
Q ss_pred hcCCCchhHHHHHHHHHHHHhcC
Q 043116 290 LIHNHNKSIKKEVCWIISNITAG 312 (482)
Q Consensus 290 l~~~~~~~v~~~a~~~L~nl~~~ 312 (482)
+.++ +++++..|..++..+...
T Consensus 72 l~D~-~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDE-NPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCC-CHHHHHHHHHHHHHHHHh
Confidence 8888 999999999999999874
No 156
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.47 E-value=0.12 Score=50.15 Aligned_cols=349 Identities=15% Similarity=0.130 Sum_probs=192.3
Q ss_pred HHHHHHhhcCCCCh--HHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhH
Q 043116 72 VPRFVEFLMREDYP--QLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSSRCR 148 (482)
Q Consensus 72 ~~~L~~ll~~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~ 148 (482)
+|.++..|.+.+.. .-.+..+.+|+.+|. ++...+.+.. .++..+...... .+......++.+|.++........
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~-~~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~ 78 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALST-SPQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK 78 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHC-ChhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc
Confidence 36677777766522 567788999999998 4454444433 445555555542 355666677777777763322211
Q ss_pred -----HHHHHhCChHHHHHHHcchh------hhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc----------
Q 043116 149 -----DFVLSQGALIPLLAELNEHA------KLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR---------- 207 (482)
Q Consensus 149 -----~~~~~~~~i~~l~~~l~~~~------~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~---------- 207 (482)
....+..+++.+++...... +..+...+...+..+++.-+. ..-..++..+..++.
T Consensus 79 ~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~---~~q~~~~~~~~~lf~~~~~~~~~~~ 155 (415)
T PF12460_consen 79 QFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSP---EKQQEILDELYSLFLSPKSFSPFQP 155 (415)
T ss_pred ccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHccccccCCCCc
Confidence 22223336777776663321 244555555556555554321 111223434443332
Q ss_pred cC------ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhC-CCChhhHHHHHHHHhHhhcCChhhHHHHHhc
Q 043116 208 SN------DEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLG-HRSRLVLTAALRTIGNIVTGDDFQTQCIINC 280 (482)
Q Consensus 208 ~~------~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~ 280 (482)
.. ......-...+++.+-..-. .. ....++..++.+.. ..++..+..++++++.++...+... .. .
T Consensus 156 ~~~~~~~~~~~~~~l~~~il~~l~~~~~--~~--~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l-~ 228 (415)
T PF12460_consen 156 SSSTISEQQSRLVILFSAILCSLRKDVS--LP--DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DL-D 228 (415)
T ss_pred cccccccccccHHHHHHHHHHcCCcccC--cc--CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hH-H
Confidence 11 11111222223333222111 00 11125667777654 4557889999999998886422211 11 1
Q ss_pred CchHHHHHHhcCCCchhHHHH----HHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCC
Q 043116 281 GALRYLLGLLIHNHNKSIKKE----VCWIISNITA-GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGG 355 (482)
Q Consensus 281 ~~i~~L~~ll~~~~~~~v~~~----a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~ 355 (482)
.++..+..-+.+...+..+.. ..|+.--+.. +++... .++..|++++.+ +++...++.++.-+....
T Consensus 229 ~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~------~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~ 300 (415)
T PF12460_consen 229 EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT------ELLDKLLELLSS--PELGQQAAKAFGILLSDS 300 (415)
T ss_pred HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH------HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCc
Confidence 234444444411113333433 3455555544 333321 245667777775 678888999999887751
Q ss_pred C-------HHHHHHHHHcC----ChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHH
Q 043116 356 T-------HEQIKHLVREG----CVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLE 424 (482)
Q Consensus 356 ~-------~~~~~~l~~~~----~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 424 (482)
+ ....+.+..+. .++.|++..+..+...+...+.+|..+++..+..- +...+ ...++
T Consensus 301 ~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~v----------l~~~l--~~LlP 368 (415)
T PF12460_consen 301 DDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSV----------LLPEL--PTLLP 368 (415)
T ss_pred HHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHH----------HHHHH--HHHHH
Confidence 1 12233444443 46777777777777788999999999998766532 12211 12466
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 043116 425 KIENLQSHDNNDIHEMSVKILETYWCGR 452 (482)
Q Consensus 425 ~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 452 (482)
.+.+-+..++.++...+..++..+..+.
T Consensus 369 LLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 369 LLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 6666678888999999999998887766
No 157
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=0.0072 Score=60.64 Aligned_cols=223 Identities=12% Similarity=0.097 Sum_probs=145.5
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhC
Q 043116 76 VEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQG 155 (482)
Q Consensus 76 ~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 155 (482)
+..+.++. +.++..+++.|..+... .+....+...+++...++.+++.++-+--+|+..+..+|.-.++ .
T Consensus 733 i~sl~d~q-vpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e--------~ 802 (982)
T KOG4653|consen 733 ISSLHDDQ-VPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE--------D 802 (982)
T ss_pred HHHhcCCc-ccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------h
Confidence 34444555 77899999999999873 35566677788999999999999999999999998888844332 3
Q ss_pred ChHHHHHHHcchh---hhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHH
Q 043116 156 ALIPLLAELNEHA---KLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKI 232 (482)
Q Consensus 156 ~i~~l~~~l~~~~---~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~ 232 (482)
+++.+...-.+.. .++.+-.+-.++.++..............++...+...++++...|..++..+++++.......
T Consensus 803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~v 882 (982)
T KOG4653|consen 803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQV 882 (982)
T ss_pred hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhh
Confidence 5666666332221 1234444456667666654444444556777788888888888889999999999985433222
Q ss_pred HHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcCChhhHHHHHh---cCchHHHHHHhcCCCchhHHHHHHHHHHH
Q 043116 233 QAVIEAGVCPRLVKLL-GHRSRLVLTAALRTIGNIVTGDDFQTQCIIN---CGALRYLLGLLIHNHNKSIKKEVCWIISN 308 (482)
Q Consensus 233 ~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~---~~~i~~L~~ll~~~~~~~v~~~a~~~L~n 308 (482)
...+ ..++..++.+. .+++..+|++|+..+..+..+.....-.+.. .+....+........+..++..|+.++-.
T Consensus 883 sd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee 961 (982)
T KOG4653|consen 883 SDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE 961 (982)
T ss_pred hHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 1111 12334444544 3567789999999999998765543333322 23444455555555456677777766654
Q ss_pred H
Q 043116 309 I 309 (482)
Q Consensus 309 l 309 (482)
+
T Consensus 962 i 962 (982)
T KOG4653|consen 962 I 962 (982)
T ss_pred H
Confidence 4
No 158
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=97.35 E-value=0.011 Score=51.49 Aligned_cols=186 Identities=12% Similarity=0.137 Sum_probs=124.1
Q ss_pred CChhHHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHh-------hCCCC--h---hhHHHHHHHHhHhhcCChhhHH
Q 043116 209 NDEKVLTDACRALAYLADGTNDKIQAVIEA-GVCPRLVKL-------LGHRS--R---LVLTAALRTIGNIVTGDDFQTQ 275 (482)
Q Consensus 209 ~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~-~~l~~L~~l-------l~~~~--~---~v~~~a~~~L~~l~~~~~~~~~ 275 (482)
.+++.++.|+.-|+.--+..++..-.++.+ |.+..+++= ++.+. + .-..+|+..+..++. +++...
T Consensus 7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~ 85 (262)
T PF04078_consen 7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRM 85 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHH
T ss_pred cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHH
Confidence 367888888888887766666666666665 666666542 23222 1 123345555555565 777778
Q ss_pred HHHhcCchHHHHHHhcCCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHH
Q 043116 276 CIINCGALRYLLGLLIHNH----NKSIKKEVCWIISNITA-GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISN 350 (482)
Q Consensus 276 ~l~~~~~i~~L~~ll~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~ 350 (482)
.++++++.-.|..+|+... -+.+|-...++++.+.. ++++.+..+++.+++|..++.++.++.-.|..|...+..
T Consensus 86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 8999998877777776542 35688889999999998 678888889999999999999999988888889988888
Q ss_pred hhcCC--------CHHHHHHHHHcCChHHHHh-cCCCCCHHHHHHHHHHHHHHHHh
Q 043116 351 ATSGG--------THEQIKHLVREGCVKPLCD-LLPCPDPQIVTVCLIGLENILKV 397 (482)
Q Consensus 351 l~~~~--------~~~~~~~l~~~~~l~~L~~-ll~~~~~~v~~~~l~~L~~l~~~ 397 (482)
+.... ++++...+.. ++..++. +.+.+++.+.+.++.+..++.+.
T Consensus 166 IL~dd~GL~yiC~t~eRf~av~~--vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn 219 (262)
T PF04078_consen 166 ILLDDVGLNYICQTAERFFAVAM--VLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN 219 (262)
T ss_dssp HHHSHHHHHHHTSSHHHHHHHHH--HHHHHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred HHcchhHHHHHhcCHHHHHHHHH--HHHHHHHHHccCCChhHHHHHHHHHHHHccC
Confidence 87632 3333333222 4444443 45578888999888888888754
No 159
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.35 E-value=0.23 Score=50.69 Aligned_cols=230 Identities=11% Similarity=0.106 Sum_probs=150.0
Q ss_pred hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHH
Q 043116 122 LASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRV 201 (482)
Q Consensus 122 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~ 201 (482)
..+..|.+.-.+.|+++.++.........+. .++...++.+..+..+.++..++.+++..|. +.........++..
T Consensus 459 ~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~ 534 (1005)
T KOG2274|consen 459 VYQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSLQPMILDG 534 (1005)
T ss_pred ccccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccccchHHHHH
Confidence 3456677766899999988744322222211 1344555556455666777888888888773 33444445778888
Q ss_pred HHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhh--CCCChhhHHHHHHHHhHhhcCChhhHHHHHh
Q 043116 202 LAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLL--GHRSRLVLTAALRTIGNIVTGDDFQTQCIIN 279 (482)
Q Consensus 202 L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll--~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~ 279 (482)
|.++......++......+|+..+..+++... ..+..+.|.+..+. .+++|.+...+--++-.++.... ... -+.
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~-~~g-~m~ 611 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAA-SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA-NYG-PMQ 611 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhh-hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH-hhc-chH
Confidence 88888888999999999999999988776543 45556777766654 33566665555555554443111 000 112
Q ss_pred cCchHHHHHHhcCCCc----hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH-hcCChhHHHHHHHHHHHhhcC
Q 043116 280 CGALRYLLGLLIHNHN----KSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLL-QDAEFGTKKEAAWVISNATSG 354 (482)
Q Consensus 280 ~~~i~~L~~ll~~~~~----~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~~~~~a~~aL~~l~~~ 354 (482)
...+|.++..+..+ . ......+.-.|..+.++.+.-....+-.-++|.+.++. .++|.++...+-.+|..+...
T Consensus 612 e~~iPslisil~~~-~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 612 ERLIPSLISVLQLN-ADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred HHHHHHHHHHHcCc-ccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 24789999999887 4 56677778888878875444343333334678777765 467888889999999999887
Q ss_pred CCHHH
Q 043116 355 GTHEQ 359 (482)
Q Consensus 355 ~~~~~ 359 (482)
+.++.
T Consensus 691 ~~eq~ 695 (1005)
T KOG2274|consen 691 TLEQL 695 (1005)
T ss_pred CHHHH
Confidence 44333
No 160
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.29 E-value=0.0019 Score=47.78 Aligned_cols=91 Identities=16% Similarity=0.138 Sum_probs=66.5
Q ss_pred HHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCCh
Q 043116 174 RTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSR 253 (482)
Q Consensus 174 ~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 253 (482)
.-++.+|...+..-+.........+++.++..+.++++.+|..++.+|.+++.......- ..-..+++.|.+++.++++
T Consensus 4 ~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l-~~f~~IF~~L~kl~~D~d~ 82 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEIL-PYFNEIFDALCKLSADPDE 82 (97)
T ss_pred hHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCch
Confidence 345566666665544445556688999999999999999999999999999965433221 1223678889999999999
Q ss_pred hhHHHHHHHHhHh
Q 043116 254 LVLTAALRTIGNI 266 (482)
Q Consensus 254 ~v~~~a~~~L~~l 266 (482)
.|+..| ..|-++
T Consensus 83 ~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 83 NVRSAA-ELLDRL 94 (97)
T ss_pred hHHHHH-HHHHHH
Confidence 988876 444444
No 161
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.29 E-value=0.011 Score=49.68 Aligned_cols=91 Identities=18% Similarity=0.161 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhC-ChHHHHHH
Q 043116 85 PQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQG-ALIPLLAE 163 (482)
Q Consensus 85 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~i~~l~~~ 163 (482)
+.+|..++.+++.++...+...+ ..++.+...|.++++.+|..|+.+|..+...+.- .-.| .+..++..
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-----k~k~~l~~~~l~~ 71 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-----KVKGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-----eehhhhhHHHHHH
Confidence 78999999999999886655433 3578999999999999999999999999844321 1112 23667777
Q ss_pred HcchhhhhHHHHHHHHHHHhhcC
Q 043116 164 LNEHAKLSMLRTATWTLSNFCRG 186 (482)
Q Consensus 164 l~~~~~~~~~~~a~~~L~~L~~~ 186 (482)
+ .+++++++..|..++..+...
T Consensus 72 l-~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 L-VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred H-cCCCHHHHHHHHHHHHHHHHh
Confidence 7 788999999999999999887
No 162
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.27 E-value=0.00083 Score=40.81 Aligned_cols=37 Identities=32% Similarity=0.662 Sum_probs=33.7
Q ss_pred hHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 043116 273 QTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNIT 310 (482)
Q Consensus 273 ~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~ 310 (482)
....+.+.|+++.|++++.++ +++++..++|+|.|++
T Consensus 4 ~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 4 QKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHc
Confidence 556788999999999999987 9999999999999986
No 163
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.21 E-value=0.028 Score=45.27 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=98.1
Q ss_pred HHHHHHhCChHHHHHHHcchhh-----hhHHHHHHHHHHHhhcCCCCCChhh-hhhHHHHHHHHhccC--ChhHHHHHHH
Q 043116 148 RDFVLSQGALIPLLAELNEHAK-----LSMLRTATWTLSNFCRGKPQPPFNQ-IRPALRVLAQLIRSN--DEKVLTDACR 219 (482)
Q Consensus 148 ~~~~~~~~~i~~l~~~l~~~~~-----~~~~~~a~~~L~~L~~~~~~~~~~~-~~~~~~~L~~ll~~~--~~~~~~~~l~ 219 (482)
...+...+++..|++++.+... .++...++.++..|-..+ ...... ...++..++.+++.+ |..+...++.
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 3456788899999999966553 477888899999988875 333333 357888888888754 6889999999
Q ss_pred HHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChh
Q 043116 220 ALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDF 272 (482)
Q Consensus 220 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 272 (482)
.|-++..+++.....+.+.=-++.|+..|..+++.++.+++..+..+....++
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 99999988887676666666789999999999999999999988888765443
No 164
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.18 E-value=0.016 Score=60.32 Aligned_cols=148 Identities=15% Similarity=0.131 Sum_probs=117.7
Q ss_pred hhhhhhHHHHHHHHhc----cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhC-CCChhhHHHHHHHHhHh
Q 043116 192 FNQIRPALRVLAQLIR----SNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLG-HRSRLVLTAALRTIGNI 266 (482)
Q Consensus 192 ~~~~~~~~~~L~~ll~----~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l 266 (482)
......+.|.++...+ .++|+++..|.-+|+.+..-+.+... .-++.+...|. ++++.+|.++.-+++.+
T Consensus 914 k~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDl 988 (1251)
T KOG0414|consen 914 KSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDL 988 (1251)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccch
Confidence 3344667888888885 45799999999999998866554332 34688888885 89999999999999999
Q ss_pred hcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH-HcCChHHHHHHHhcCChhHHHHHH
Q 043116 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVI-DAGLIGPIVNLLQDAEFGTKKEAA 345 (482)
Q Consensus 267 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~~~~~a~ 345 (482)
+...+.... -.-+.|...|.+. ++.||+.|..+|+++... .++ -.|.++.+...+.+++.+++.-|-
T Consensus 989 av~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILn------dmiKVKGql~eMA~cl~D~~~~IsdlAk 1056 (1251)
T KOG0414|consen 989 AVRFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILN------DMIKVKGQLSEMALCLEDPNAEISDLAK 1056 (1251)
T ss_pred hhhcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHh------hhhHhcccHHHHHHHhcCCcHHHHHHHH
Confidence 987666544 2445688899998 999999999999999863 223 368999999999999999999999
Q ss_pred HHHHHhhcCCC
Q 043116 346 WVISNATSGGT 356 (482)
Q Consensus 346 ~aL~~l~~~~~ 356 (482)
..+..+...++
T Consensus 1057 ~FF~Els~k~n 1067 (1251)
T KOG0414|consen 1057 SFFKELSSKGN 1067 (1251)
T ss_pred HHHHHhhhccc
Confidence 88888887664
No 165
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.12 E-value=0.0047 Score=45.66 Aligned_cols=68 Identities=19% Similarity=0.262 Sum_probs=56.8
Q ss_pred hHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043116 255 VLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIH-NHNKSIKKEVCWIISNITAGNREQIQAVID 322 (482)
Q Consensus 255 v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 322 (482)
++...+.+|+|++..++.....+.+.|+++.++..-.- ..+|.+|.-|.|++.|++.++++....+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 46678899999999999999999999999999876643 238999999999999999998886554443
No 166
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.11 E-value=0.062 Score=49.53 Aligned_cols=173 Identities=14% Similarity=0.106 Sum_probs=114.5
Q ss_pred hhhHHHHHH-HHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCh-h
Q 043116 195 IRPALRVLA-QLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDD-F 272 (482)
Q Consensus 195 ~~~~~~~L~-~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~ 272 (482)
..+++..++ +.+++.++.+|..++.||+-.+--+.+... ..++.+...+..+++.++..|+.++..+....+ .
T Consensus 24 l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~ 98 (298)
T PF12719_consen 24 LESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGID 98 (298)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCch
Confidence 346666554 788999999999999999998865543322 345677777777788999999999998875332 1
Q ss_pred hHHHH-------HhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh----cCChhHH
Q 043116 273 QTQCI-------INCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ----DAEFGTK 341 (482)
Q Consensus 273 ~~~~l-------~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~----~~~~~~~ 341 (482)
..... ....+++.+.+.+.+. +++++..|+..++.+.....-.- ...++..|+-..- .++..++
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~Lr 173 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLR 173 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHH
Confidence 11111 1235778888999998 99999999999999876211100 1124444444333 2456677
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCC
Q 043116 342 KEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCP 379 (482)
Q Consensus 342 ~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~ 379 (482)
..-...+-..+.. ++.+... +...+++.+..+.+.+
T Consensus 174 Q~L~~Ffp~y~~s-~~~~Q~~-l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 174 QCLSVFFPVYASS-SPENQER-LAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHHHcC-CHHHHHH-HHHHHHHHHHHHHhCc
Confidence 7666677777664 5555444 5556677777666543
No 167
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.11 E-value=0.0039 Score=62.92 Aligned_cols=185 Identities=19% Similarity=0.189 Sum_probs=132.7
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh-------------HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH
Q 043116 72 VPRFVEFLMREDYPQLQFEAARALTNIASGTSEN-------------TKVAIDHGAVPIFVKLLASPSDDVREQAVWALG 138 (482)
Q Consensus 72 ~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~-------------~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~ 138 (482)
...|+.+|+.+ ++-..++.++.-+..+++.. ++.+. ..++|.|+......+...+..-+.+|.
T Consensus 817 a~klld~Ls~~---~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~t~~~~~K~~yl~~Ls 892 (1030)
T KOG1967|consen 817 AEKLLDLLSGP---STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFETAPGSQKHNYLEALS 892 (1030)
T ss_pred HHHHHHhcCCc---cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhccCCccchhHHHHHHH
Confidence 44455666553 33444555555555544332 23333 257899999888888888889999999
Q ss_pred HhhCCChhhHHHHHHh-CChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCC---hhHH
Q 043116 139 NVAGDSSRCRDFVLSQ-GALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSND---EKVL 214 (482)
Q Consensus 139 ~l~~~~~~~~~~~~~~-~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~---~~~~ 214 (482)
++..+.|. +...-+. ..+|.|++.+ .-+|..++..+..++.-+....+.........++|.++.+-.+++ ..+|
T Consensus 893 hVl~~vP~-~vllp~~~~LlPLLLq~L-s~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR 970 (1030)
T KOG1967|consen 893 HVLTNVPK-QVLLPQFPMLLPLLLQAL-SMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVR 970 (1030)
T ss_pred HHHhcCCH-HhhccchhhHHHHHHHhc-CCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHH
Confidence 99876654 2222111 2355555666 677888989999999999888877888888899999999877666 5789
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHH
Q 043116 215 TDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRT 262 (482)
Q Consensus 215 ~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~ 262 (482)
..|+.||..+.+.-+...-..+...++..+.+.|.++..-+|..|..+
T Consensus 971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 999999999998555444445556788999999999998999998765
No 168
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.09 E-value=0.12 Score=44.44 Aligned_cols=185 Identities=11% Similarity=0.120 Sum_probs=120.1
Q ss_pred ChhHHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHh-------hCC----CChhhHH-HHHHHHhHhhcCChhhHHH
Q 043116 210 DEKVLTDACRALAYLADGTNDKIQAVIEA-GVCPRLVKL-------LGH----RSRLVLT-AALRTIGNIVTGDDFQTQC 276 (482)
Q Consensus 210 ~~~~~~~~l~~L~~l~~~~~~~~~~~~~~-~~l~~L~~l-------l~~----~~~~v~~-~a~~~L~~l~~~~~~~~~~ 276 (482)
++..++.++.-|+.--+..++....++.+ |....++.- ++. +...-|. +|+..+. ...++++....
T Consensus 37 ~~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQ-cvASHpdTr~~ 115 (293)
T KOG3036|consen 37 SPPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQ-CVASHPDTRRA 115 (293)
T ss_pred CCchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHH-HHhcCcchHHH
Confidence 34556666666665554444444444444 433333321 111 1223343 3444444 44457777788
Q ss_pred HHhcCchHHHHHHhcC----CCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHh
Q 043116 277 IINCGALRYLLGLLIH----NHNKSIKKEVCWIISNITA-GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNA 351 (482)
Q Consensus 277 l~~~~~i~~L~~ll~~----~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l 351 (482)
++++.+--.+..+|.. ...+..|-.+.++|+.+.. ++.+.+..+...+++|..++.+..++...+.-|...+..+
T Consensus 116 FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKI 195 (293)
T KOG3036|consen 116 FLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKI 195 (293)
T ss_pred HHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888776666666654 3356789999999999998 6777778888999999999999999999999999999988
Q ss_pred hcCCCHHHHHHHHH--------cCChHH-HHhcCCCCCHHHHHHHHHHHHHHHHh
Q 043116 352 TSGGTHEQIKHLVR--------EGCVKP-LCDLLPCPDPQIVTVCLIGLENILKV 397 (482)
Q Consensus 352 ~~~~~~~~~~~l~~--------~~~l~~-L~~ll~~~~~~v~~~~l~~L~~l~~~ 397 (482)
..+. ....++.+ ...+.. +.++.+.+++.+.++++.+..++...
T Consensus 196 lldD--~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 196 LLDD--VGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred hhcc--ccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 7743 22222111 112333 34456678888998898888888754
No 169
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.033 Score=56.15 Aligned_cols=222 Identities=11% Similarity=0.171 Sum_probs=139.3
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhH
Q 043116 119 VKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPA 198 (482)
Q Consensus 119 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~ 198 (482)
+..++++-+.++..++..+..+.... .....+...+++...+..+ .+.|+-+.-+|...+..||.-.| +.+
T Consensus 733 i~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~L-kdedsyvyLnaI~gv~~Lcevy~-------e~i 803 (982)
T KOG4653|consen 733 ISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTL-KDEDSYVYLNAIRGVVSLCEVYP-------EDI 803 (982)
T ss_pred HHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHh-cccCceeeHHHHHHHHHHHHhcc-------hhh
Confidence 33445566778888999999998644 2335566677888888888 67777777788887777776532 567
Q ss_pred HHHHHHH-hccC---ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhH
Q 043116 199 LRVLAQL-IRSN---DEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQT 274 (482)
Q Consensus 199 ~~~L~~l-l~~~---~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 274 (482)
+|.+... .+.. .++.+..+-.++.++...-.+......+ -++..+++.+++++...|..++..+++++.-.....
T Consensus 804 l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~v 882 (982)
T KOG4653|consen 804 LPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQV 882 (982)
T ss_pred HHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhh
Confidence 7777763 3322 1344555556666666443333222222 456677777888888899999999999986444222
Q ss_pred HHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---cCChHHHHHHHh-cCChhHHHHHHHHHHH
Q 043116 275 QCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVID---AGLIGPIVNLLQ-DAEFGTKKEAAWVISN 350 (482)
Q Consensus 275 ~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~-~~~~~~~~~a~~aL~~ 350 (482)
...+ ......++.+.+.+.+.-+|+.|+-.+..+-.+.....-.+.. .+....+..+.. +++..++..++.++..
T Consensus 883 sd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee 961 (982)
T KOG4653|consen 883 SDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE 961 (982)
T ss_pred hHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 2111 1345566677766658889999999999988755443333332 123333344443 3445566666666554
Q ss_pred h
Q 043116 351 A 351 (482)
Q Consensus 351 l 351 (482)
+
T Consensus 962 i 962 (982)
T KOG4653|consen 962 I 962 (982)
T ss_pred H
Confidence 4
No 170
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.05 E-value=0.11 Score=51.02 Aligned_cols=255 Identities=13% Similarity=0.102 Sum_probs=134.6
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhh
Q 043116 116 PIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQI 195 (482)
Q Consensus 116 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 195 (482)
..++...+ ++...+..|...|..+..+-|..++. ++..++.++ .+.|..++..|...|..+|.+.+ ...
T Consensus 26 ~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLc-EDed~~iR~~aik~lp~~ck~~~----~~v 94 (556)
T PF05918_consen 26 KEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLC-EDEDVQIRKQAIKGLPQLCKDNP----EHV 94 (556)
T ss_dssp HHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHH-T-SSHHHHHHHHHHGGGG--T------T-H
T ss_pred HHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhHHHHHHhHH----HHH
Confidence 34455555 57889999999999999888887665 466899999 78889999999999999998742 345
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhC---CCChhhHHHHHHHHhHhhcC-Ch
Q 043116 196 RPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLG---HRSRLVLTAALRTIGNIVTG-DD 271 (482)
Q Consensus 196 ~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~v~~~a~~~L~~l~~~-~~ 271 (482)
..+...|+++|.++++.-...+=.+|..+...++.. .+..+...+. .+++.+|..++..|..=... ..
T Consensus 95 ~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~ 166 (556)
T PF05918_consen 95 SKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKP 166 (556)
T ss_dssp HHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-T
T ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcH
Confidence 788899999999999888888888887777554422 2344444443 46777999998877533321 11
Q ss_pred hhHH--HHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc----CCHHHHHHHHHcCChHHHHHH---HhcCChhHHH
Q 043116 272 FQTQ--CIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA----GNREQIQAVIDAGLIGPIVNL---LQDAEFGTKK 342 (482)
Q Consensus 272 ~~~~--~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~----~~~~~~~~l~~~~~i~~L~~l---l~~~~~~~~~ 342 (482)
+... .-.+.-++..+.++|.+- ...--.....+|..+-. .+....+.+++ ++....++ +...+++...
T Consensus 167 ~~~~p~~E~e~~i~~~ikkvL~DV-TaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~--ii~eQa~Ld~~f~~sD~e~Id 243 (556)
T PF05918_consen 167 ELLTPQKEMEEFIVDEIKKVLQDV-TAEEFELFMSLLKSLKIYGGKQTIEGRQELVD--IIEEQADLDQPFDPSDPESID 243 (556)
T ss_dssp TTS---HHHHHHHHHHHHHHCTT---HHHHHHHHHHHHTSGG---GSSHHHHHHHHH--HHHHHHTTTS---SSSHHHHH
T ss_pred HHhhchHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhCccccccCChHHHHHHHH--HHHHHhccCCCCCCcCHHHHH
Confidence 1111 112223455666777654 22222233344444433 23444444443 22221111 1223445444
Q ss_pred HHHHHHHH----hhcCC-CHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHh
Q 043116 343 EAAWVISN----ATSGG-THEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKV 397 (482)
Q Consensus 343 ~a~~aL~~----l~~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~ 397 (482)
..+.++.. +.... +.....++.+ .+++.+.++ ..+.+...+..+.-+..+
T Consensus 244 rli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~ 298 (556)
T PF05918_consen 244 RLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPF 298 (556)
T ss_dssp HHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCC
Confidence 44444433 22221 3334444444 466666555 223444444444444433
No 171
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.99 E-value=0.016 Score=57.96 Aligned_cols=241 Identities=14% Similarity=0.069 Sum_probs=157.5
Q ss_pred ChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH-HhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHH
Q 043116 102 TSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALG-NVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTL 180 (482)
Q Consensus 102 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~-~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L 180 (482)
...-+...++.|+...|+++.....+..+.....+|. .+....... ...++++.+.+.++..-.-...++.++
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d~~~~en~E~L~al 566 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHNDEKGLENFEALEAL 566 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence 3444566778899999999988888887777777777 443222111 124666666663333222234488888
Q ss_pred HHhhcCCCCCChhhh-hhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhhCCCChhhHHH
Q 043116 181 SNFCRGKPQPPFNQI-RPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEA-GVCPRLVKLLGHRSRLVLTA 258 (482)
Q Consensus 181 ~~L~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~~~~~v~~~ 258 (482)
.||+..+......+. .-.++.+-.++..+++..+..++.++.||.-+..-..+.+.+. ..++.....+..........
T Consensus 567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA 646 (748)
T KOG4151|consen 567 TNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELA 646 (748)
T ss_pred hcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhh
Confidence 988887644333333 4556667777888899999999999999997665555555553 34455555555566677777
Q ss_pred HHHHHhHhhcCChhhHH-HHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC
Q 043116 259 ALRTIGNIVTGDDFQTQ-CIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAE 337 (482)
Q Consensus 259 a~~~L~~l~~~~~~~~~-~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 337 (482)
++.++..+.......+. ..--..+...+..++.+. +..++......+.|+.....+....++....++.+..+-.-..
T Consensus 647 ~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~ 725 (748)
T KOG4151|consen 647 GAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNR 725 (748)
T ss_pred ccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 77777766665554444 333346788899999999 9999999999999976666665666666666666655544333
Q ss_pred hhHHHHHHHHHH
Q 043116 338 FGTKKEAAWVIS 349 (482)
Q Consensus 338 ~~~~~~a~~aL~ 349 (482)
...++.+..+|.
T Consensus 726 a~~~~~~~~~l~ 737 (748)
T KOG4151|consen 726 APKREDAAPCLS 737 (748)
T ss_pred hhhhhhhhhHHH
Confidence 334444444433
No 172
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.97 E-value=0.15 Score=48.10 Aligned_cols=147 Identities=12% Similarity=0.127 Sum_probs=106.1
Q ss_pred ChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHH-HHHHhccCCcHHHHH
Q 043116 156 ALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACR-ALAYLADGTNDKIQA 234 (482)
Q Consensus 156 ~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~-~L~~l~~~~~~~~~~ 234 (482)
++..++..+.+..+...+..|+.+|..++...+..-+...+-++..+++.-.+.++++...|.. |+..++.+.+...
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-- 407 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-- 407 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH--
Confidence 4566777886667888889999999999999876666666777777887777777766665555 4555556655432
Q ss_pred HHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 043116 235 VIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA 311 (482)
Q Consensus 235 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 311 (482)
+..+..++...+......++..+..++..-....-..+-..+.|.+++...+. +..||+.|+++|..+..
T Consensus 408 ------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 408 ------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN 477 (516)
T ss_pred ------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence 34555666556777777788888888764432222223347899999999999 99999999999998865
No 173
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.13 Score=51.14 Aligned_cols=172 Identities=17% Similarity=0.197 Sum_probs=107.5
Q ss_pred HHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 043116 242 PRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVI 321 (482)
Q Consensus 242 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 321 (482)
+.+-+++.+.+|-+|.....+++---.+.. +.+++..|+..--+..+.+||+.|+-+|+-++..+|+.
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~----- 589 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ----- 589 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh-----
Confidence 344455666677777766555542211111 12567777777444448999999999999999988884
Q ss_pred HcCChHHHHHHHh-cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchh
Q 043116 322 DAGLIGPIVNLLQ-DAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEA 400 (482)
Q Consensus 322 ~~~~i~~L~~ll~-~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~ 400 (482)
.+..+++|. +-++.||..++.||+-.+.+..... ++..|..+.+++..-|+..|+-++.-++.....
T Consensus 590 ----~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~ 657 (929)
T KOG2062|consen 590 ----LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTE 657 (929)
T ss_pred ----chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhccc
Confidence 444555665 5689999999999998877533221 466677777777778999898888877643221
Q ss_pred ccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHH-HHHHHHHHHhcC
Q 043116 401 EKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIH-EMSVKILETYWC 450 (482)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~-~~a~~~l~~~~~ 450 (482)
. .++-.. +..+.+.++..+.+++.- +...-+-+.+.+
T Consensus 658 --~------~~pkv~-----~frk~l~kvI~dKhEd~~aK~GAilAqGild 695 (929)
T KOG2062|consen 658 --Q------LCPKVN-----GFRKQLEKVINDKHEDGMAKFGAILAQGILD 695 (929)
T ss_pred --c------cCchHH-----HHHHHHHHHhhhhhhHHHHHHHHHHHhhhhh
Confidence 1 111122 234556666666665553 444444344433
No 174
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.93 E-value=0.061 Score=50.96 Aligned_cols=222 Identities=12% Similarity=0.107 Sum_probs=131.0
Q ss_pred HHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHHhCChHHHHHHHcchh
Q 043116 90 EAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-SRCRDFVLSQGALIPLLAELNEHA 168 (482)
Q Consensus 90 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~ 168 (482)
.|+++|-.+....+.....+.+.+++..+++.++.+-....+. .-...-.... +..+..... -..+ ...
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~i-~~~ 72 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVD-------GYSI-SYQ 72 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCccccccc-------cccc-CHH
Confidence 4677777777767777788889999999999886432222111 0000000010 011000000 0000 111
Q ss_pred hhhHHHHHHHHHHHhhc-CC--CCC-Chhhh-hhHHHHHHHHhccCC---hhHHHHHHHHHHHhccCCcHHHHHHHHhCc
Q 043116 169 KLSMLRTATWTLSNFCR-GK--PQP-PFNQI-RPALRVLAQLIRSND---EKVLTDACRALAYLADGTNDKIQAVIEAGV 240 (482)
Q Consensus 169 ~~~~~~~a~~~L~~L~~-~~--~~~-~~~~~-~~~~~~L~~ll~~~~---~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~ 240 (482)
.....+..+.++..+.. .. ... ..... ..++..|..++.+.. +.+...++..+..+..+.+.....+.+.|+
T Consensus 73 r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl 152 (379)
T PF06025_consen 73 RQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGL 152 (379)
T ss_pred HHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCC
Confidence 12233334444444444 22 111 11222 345666777777653 789999999999999888888888999999
Q ss_pred HHHHHHhhC-C---CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCch------hHHHHHHHHHHHHh
Q 043116 241 CPRLVKLLG-H---RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNK------SIKKEVCWIISNIT 310 (482)
Q Consensus 241 l~~L~~ll~-~---~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~------~v~~~a~~~L~nl~ 310 (482)
.+.++..+. . ++.++....-.+++.||- +....+.+.+.+.++.+++++.++... +.-......+-.+.
T Consensus 153 ~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~ 231 (379)
T PF06025_consen 153 IDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELM 231 (379)
T ss_pred hHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHH
Confidence 999999887 4 456677777778888887 555567788899999999999886321 12222333444455
Q ss_pred cCCHHHHHHHHH
Q 043116 311 AGNREQIQAVID 322 (482)
Q Consensus 311 ~~~~~~~~~l~~ 322 (482)
++.|..+..+++
T Consensus 232 RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 232 RHHPSLKPDIID 243 (379)
T ss_pred ccCHHHHHHHHH
Confidence 566665444443
No 175
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.91 E-value=0.12 Score=47.55 Aligned_cols=191 Identities=18% Similarity=0.159 Sum_probs=116.1
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHH--hCChHHHHHHHcchhhhhHHHHHHHHHHHhhcC--CCCC
Q 043116 115 VPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLS--QGALIPLLAELNEHAKLSMLRTATWTLSNFCRG--KPQP 190 (482)
Q Consensus 115 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~--~~~~ 190 (482)
+...+..+.+.....|+.++..+.++...... .+.+.. .-++..+.+.+++... +-+..|+.++.-++-. ....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCcc
Confidence 34445555667788999999999888744332 222221 1235566666644333 4445566666666554 2344
Q ss_pred ChhhhhhHHHHHHHHhccCC--hhHHHHHHHHHHHhc---cCCcHHHHHHHHhCcHHHH--HHhhC----------CCCh
Q 043116 191 PFNQIRPALRVLAQLIRSND--EKVLTDACRALAYLA---DGTNDKIQAVIEAGVCPRL--VKLLG----------HRSR 253 (482)
Q Consensus 191 ~~~~~~~~~~~L~~ll~~~~--~~~~~~~l~~L~~l~---~~~~~~~~~~~~~~~l~~L--~~ll~----------~~~~ 253 (482)
...++..+.|.|...+.+.. +.++..++.+|+-++ ....+.....++ .+..+ ....+ .+++
T Consensus 123 ~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 123 SEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence 55677889999999988654 456667776766554 333333221111 22211 11121 1235
Q ss_pred hhHHHHHHHHhHhhcCChhh-HHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 043116 254 LVLTAALRTIGNIVTGDDFQ-TQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA 311 (482)
Q Consensus 254 ~v~~~a~~~L~~l~~~~~~~-~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 311 (482)
.+...|+.+.+-|...-+.. ..... ...++.|..+|+++ +..||..|..+|+-+..
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSD-DVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 68888888888887655542 22222 34689999999999 99999999999988754
No 176
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.90 E-value=0.013 Score=48.00 Aligned_cols=144 Identities=15% Similarity=0.162 Sum_probs=100.7
Q ss_pred HHHHHhhC--CCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 043116 242 PRLVKLLG--HRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQA 319 (482)
Q Consensus 242 ~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 319 (482)
+.++..+. ...+++|..+.-++..+. +.. +.-....+-+.+-..+... +.+-...++.++..+....++....
T Consensus 6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~-~~~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 6 DTLLTSLDMLRQPEEVRSHALVILSKLL---DAA-REEFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHhcccCCCHhHHHHHHHHHHHHH---HHh-HHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHH
Confidence 44555444 356678999988888884 211 2122223444555666665 6667788999999998888888877
Q ss_pred HH-HcCChHHHHHHHh--cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCC-CCCHH-HHHHHHHHHHH
Q 043116 320 VI-DAGLIGPIVNLLQ--DAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP-CPDPQ-IVTVCLIGLEN 393 (482)
Q Consensus 320 l~-~~~~i~~L~~ll~--~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~-v~~~~l~~L~~ 393 (482)
++ ..|+++.++.+.. ..+..++..++.+|..-+. +...+.. +...+++.|.+.++ ++++. ++..++-+|.+
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~--d~~~r~~-I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI--DKSCRTF-ISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT--SHHHHHC-CHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc--cHHHHHH-HHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 77 6889999999999 7888899999999988776 4444444 55567999999996 45555 77777766654
No 177
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.25 Score=47.01 Aligned_cols=113 Identities=16% Similarity=0.165 Sum_probs=75.4
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC--hhh
Q 043116 196 RPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGD--DFQ 273 (482)
Q Consensus 196 ~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~ 273 (482)
..++..+..-..+++..++..++++|++.+...++........-+...+..+....+.+|...++.+|..+...- ...
T Consensus 257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l 336 (533)
T KOG2032|consen 257 GSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL 336 (533)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence 444444555555778889999999999999886666555444333333334445566889999999988776421 111
Q ss_pred HHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 043116 274 TQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA 311 (482)
Q Consensus 274 ~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 311 (482)
...+ .++.-.+..+..+. ++++|..+...++.++.
T Consensus 337 ~~~~--l~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 337 ESYL--LNIALRLRTLFDSE-DDKMRAAAFVLFGALAK 371 (533)
T ss_pred hhhc--hhHHHHHHHHHHhc-ChhhhhhHHHHHHHHHH
Confidence 1111 13455677788888 88999999888888875
No 178
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.86 E-value=0.0034 Score=47.69 Aligned_cols=73 Identities=21% Similarity=0.310 Sum_probs=61.8
Q ss_pred hhHHHHHHHHhc-cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 043116 196 RPALRVLAQLIR-SNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVT 268 (482)
Q Consensus 196 ~~~~~~L~~ll~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 268 (482)
..++..|+.+|. +.|+.+..-||.-|+.++...+.....+-+.|+=..++.+|.+++++|+..|+.++..+..
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 467888999994 5578889999999999998888887777777999999999999999999999999988765
No 179
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.24 Score=47.03 Aligned_cols=257 Identities=14% Similarity=0.095 Sum_probs=141.3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCChh-hHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChh-hhhhHHH
Q 043116 123 ASPSDDVREQAVWALGNVAGDSSR-CRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFN-QIRPALR 200 (482)
Q Consensus 123 ~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~-~~~~~~~ 200 (482)
.+++..++..|+++|+|.+..-|. .+.. ..-.+..++.-|.+..+.+++-.+..+|..+.......... ..-++.-
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th--~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ial 345 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTH--KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIAL 345 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHh--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHH
Confidence 457789999999999999977433 3222 22246666776757777889999998888887764332222 2345555
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhccCCcHHHHH-HHH--hCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHH
Q 043116 201 VLAQLIRSNDEKVLTDACRALAYLADGTNDKIQA-VIE--AGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCI 277 (482)
Q Consensus 201 ~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~-~~~--~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l 277 (482)
.+..++.+.+++.+..+...++.++.......+. +.+ .+-...++-.+.++++.+.. ||+.....+..+-. .+.+
T Consensus 346 rlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~~~c~p~l~-rke~ 423 (533)
T KOG2032|consen 346 RLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSELRTCYPNLV-RKEL 423 (533)
T ss_pred HHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHHHhcCchhH-HHHH
Confidence 6778888999999999999888887432221121 221 12234455556677775544 55555555432211 1111
Q ss_pred HhcCchHHHHHHhcCCCch-hHHHH-HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCC
Q 043116 278 INCGALRYLLGLLIHNHNK-SIKKE-VCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGG 355 (482)
Q Consensus 278 ~~~~~i~~L~~ll~~~~~~-~v~~~-a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~ 355 (482)
. ++++.. + .. +. ..+.- .-| ...+....++....+.. ...-++++.-+.++..+...-.+...+-
T Consensus 424 ~--~~~q~~---l-d~-~~~~~q~Fyn~~-c~~L~~i~~d~l~~~~t-----~~~~~f~sswe~vr~aavl~t~~~vd~l 490 (533)
T KOG2032|consen 424 Y--HLFQES---L-DT-DMARFQAFYNQW-CIQLNHIHPDILMLLLT-----EDQHIFSSSWEQVREAAVLKTTRSVDSL 490 (533)
T ss_pred H--HHHhhh---h-HH-hHHHHHHHHHHH-HHHHhhhCHHHHHHHHH-----hchhheecchHHHHHHHHHHHHHHHHHh
Confidence 1 122211 1 11 11 11111 111 11122222332222221 1112223333455665555555555544
Q ss_pred CHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 043116 356 THEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILK 396 (482)
Q Consensus 356 ~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~ 396 (482)
.+..+....-......+..+...+-+++...+..++..+..
T Consensus 491 ~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 491 VRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 44444444444456667778888999999999999988764
No 180
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.80 E-value=0.1 Score=48.11 Aligned_cols=107 Identities=12% Similarity=0.095 Sum_probs=82.5
Q ss_pred HHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHH
Q 043116 243 RLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA-GNREQIQAVI 321 (482)
Q Consensus 243 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~ 321 (482)
.+.+.++++++.+|..++.|||-.+--+..... ..++.+...++.+ +..++..|+.++..+.. +.........
T Consensus 31 lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~~~~~~ 104 (298)
T PF12719_consen 31 LILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDIFDSES 104 (298)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchhccchh
Confidence 344788999999999999999998876664433 3466777888777 89999999999999986 3333332222
Q ss_pred -------HcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCC
Q 043116 322 -------DAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGG 355 (482)
Q Consensus 322 -------~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~ 355 (482)
...++..+.+.+.+.+++++..|+.+++.+...+
T Consensus 105 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 105 DNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred ccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 2456778888888899999999999999998755
No 181
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.79 E-value=0.21 Score=49.68 Aligned_cols=193 Identities=13% Similarity=0.149 Sum_probs=138.4
Q ss_pred hhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhh
Q 043116 194 QIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQ 273 (482)
Q Consensus 194 ~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 273 (482)
...+++|.+++++...|..+|...+.-+-....+-+ ...++..+++.+...+.+.++.+|+.++.++..++..-...
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt---~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLT---KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcC---HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 446899999999999999999998888877775543 34677789999999999999999999999999888532222
Q ss_pred HHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC-hHHHHHHHhcCChhHHHHHHHHHHHhh
Q 043116 274 TQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGL-IGPIVNLLQDAEFGTKKEAAWVISNAT 352 (482)
Q Consensus 274 ~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~-i~~L~~ll~~~~~~~~~~a~~aL~~l~ 352 (482)
.++...+..+...-.+. +..+|....-+++.++....... ..++ ...+.+-+.++-...|..+.+++..-.
T Consensus 404 ---~Ln~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 404 ---NLNGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALKDPFVPARKAGVLALAATQ 475 (690)
T ss_pred ---hhcHHHHHHHHhhCccc-cCcccccceeeecccccccchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence 23334455555555534 78899888888888876422211 2233 334555566666777888888877665
Q ss_pred cCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhc
Q 043116 353 SGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAE 401 (482)
Q Consensus 353 ~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~ 401 (482)
..-+... +...+++.+.-+.-+++..++..+..++..+....++.
T Consensus 476 ~~~~~~~----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~ 520 (690)
T KOG1243|consen 476 EYFDQSE----VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV 520 (690)
T ss_pred cccchhh----hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence 4222111 34568888999999999999999999988887765554
No 182
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.74 E-value=0.07 Score=46.64 Aligned_cols=198 Identities=12% Similarity=0.039 Sum_probs=123.9
Q ss_pred ChhhHHHHHHHHhHhhcCChhhHHHHHhc-CchHHHHHHhcC-------CC-chhHHHHHHHHH--HHHhcCCHHHHHHH
Q 043116 252 SRLVLTAALRTIGNIVTGDDFQTQCIINC-GALRYLLGLLIH-------NH-NKSIKKEVCWII--SNITAGNREQIQAV 320 (482)
Q Consensus 252 ~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-~~i~~L~~ll~~-------~~-~~~v~~~a~~~L--~nl~~~~~~~~~~l 320 (482)
+++.|+.|+.-|+.--...++..-.++.. |.+..|++=+-+ +. ....-...|.+| -.+....|+.+..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 56678888887777665556666666655 555554432211 10 111122233333 22333467878899
Q ss_pred HHcCChHHHHHHHhcC-----ChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 043116 321 IDAGLIGPIVNLLQDA-----EFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENIL 395 (482)
Q Consensus 321 ~~~~~i~~L~~ll~~~-----~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~ 395 (482)
+++++.--|..++... -+.+|.....+++.++...+++...++.+.++++.....++.++.-.+..|..++.+++
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9999877777777632 35789999999999999989999999999999999999999998888888999999998
Q ss_pred HhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 043116 396 KVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGRV 453 (482)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 453 (482)
.......-.+ .+.+.|.....-. -..+.++...+++++-+...++..++.++..
T Consensus 168 ~dd~GL~yiC--~t~eRf~av~~vL--~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr 221 (262)
T PF04078_consen 168 LDDVGLNYIC--QTAERFFAVAMVL--NKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR 221 (262)
T ss_dssp HSHHHHHHHT--SSHHHHHHHHHHH--HHHHHHHHHS--HHHHHHHHHHHHHHTTSTT
T ss_pred cchhHHHHHh--cCHHHHHHHHHHH--HHHHHHHccCCChhHHHHHHHHHHHHccCHH
Confidence 7655543322 1222222222111 1234455677888887777777776665553
No 183
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.72 E-value=0.0034 Score=47.66 Aligned_cols=73 Identities=14% Similarity=0.175 Sum_probs=61.3
Q ss_pred CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 043116 281 GALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATS 353 (482)
Q Consensus 281 ~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~ 353 (482)
.++..|+++|..+.++.+..-||.=|+.++...|..+..+-+.|+-..+++++.++|++++.+|+.++..+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3678899999665588899999999999999778877777788999999999999999999999999988764
No 184
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.67 E-value=0.27 Score=42.32 Aligned_cols=147 Identities=14% Similarity=0.156 Sum_probs=103.3
Q ss_pred hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCC-----CChhhHHHHHHHHhHhhcCCh-hhHHHHHhcCchH
Q 043116 211 EKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH-----RSRLVLTAALRTIGNIVTGDD-FQTQCIINCGALR 284 (482)
Q Consensus 211 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~i~ 284 (482)
+.-...++..+..++++.+ ....+.+..+--.+..+|.. +.+..|..+++.|+.+...++ +....+...+++|
T Consensus 93 snRVcnaL~LlQcvASHpd-Tr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP 171 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASHPD-TRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP 171 (293)
T ss_pred cchHHHHHHHHHHHhcCcc-hHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence 3445556666666776654 55567777765566676643 346689999999999998654 5667788899999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--------cCChHH-HHHHHhcCChhHHHHHHHHHHHhhcCC
Q 043116 285 YLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVID--------AGLIGP-IVNLLQDAEFGTKKEAAWVISNATSGG 355 (482)
Q Consensus 285 ~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--------~~~i~~-L~~ll~~~~~~~~~~a~~aL~~l~~~~ 355 (482)
..++.++.+ +..-|..|.+++..+...+.. ..++.. ..++.. +.++.+.+++.+.+.++++..+++.
T Consensus 172 lCLrime~G-SelSKtvA~fIlqKIlldD~G-L~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd-- 247 (293)
T KOG3036|consen 172 LCLRIMESG-SELSKTVATFILQKILLDDVG-LYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD-- 247 (293)
T ss_pred HHHHHHhcc-cHHHHHHHHHHHHHHhhcccc-HHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC--
Confidence 999999999 888999999999998764322 333322 112333 3334456788999999999999987
Q ss_pred CHHHHHH
Q 043116 356 THEQIKH 362 (482)
Q Consensus 356 ~~~~~~~ 362 (482)
++..+..
T Consensus 248 nprar~a 254 (293)
T KOG3036|consen 248 NPRARAA 254 (293)
T ss_pred CHHHHHH
Confidence 4444333
No 185
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.66 E-value=0.063 Score=50.49 Aligned_cols=183 Identities=14% Similarity=0.110 Sum_probs=110.4
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcH-HHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH
Q 043116 29 LPTMVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPI-EKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT 106 (482)
Q Consensus 29 i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 106 (482)
+..+++.++ ++..+-+..|+.-|..+.+.+ ...+ ++-. ..++..+++.|.+..++..+..|+++|..++...+..
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~-sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~- 364 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEG-SFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR- 364 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHcc-chhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh-
Confidence 444455554 345666777888888888875 2222 2111 2355667777877333788999999999999854432
Q ss_pred HHHHhC--CChHHHHHhhCCCCHHHHH-HHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116 107 KVAIDH--GAVPIFVKLLASPSDDVRE-QAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF 183 (482)
Q Consensus 107 ~~~~~~--g~i~~L~~ll~~~~~~~~~-~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L 183 (482)
+.+. -.+..+++.-.+..+++.. ++=.++..++...|.. . +..+..++ .+.|.+....++..+..+
T Consensus 365 --l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~-~-------I~~i~~~I-lt~D~~~~~~~iKm~Tkl 433 (516)
T KOG2956|consen 365 --LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ-C-------IVNISPLI-LTADEPRAVAVIKMLTKL 433 (516)
T ss_pred --hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh-H-------HHHHhhHH-hcCcchHHHHHHHHHHHH
Confidence 2221 1344444444445454444 3444555555555542 1 22233333 235555555566666666
Q ss_pred hcCCCCC-ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 043116 184 CRGKPQP-PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLA 225 (482)
Q Consensus 184 ~~~~~~~-~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~ 225 (482)
+..-+.. -......+.|.+++...+....+|..+..||..+.
T Consensus 434 ~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 434 FERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 6653221 22234788999999999999999999999998776
No 186
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.65 E-value=0.71 Score=48.00 Aligned_cols=207 Identities=16% Similarity=0.229 Sum_probs=127.2
Q ss_pred HhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcc---hhh----hhHHHHHH
Q 043116 110 IDHGAVPIFVKLLAS-----PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNE---HAK----LSMLRTAT 177 (482)
Q Consensus 110 ~~~g~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~---~~~----~~~~~~a~ 177 (482)
.+.|++..++..+.+ ....+....+..|...+ ..+.+|+.+.+.++++.|+..+.. ... ..+.+..+
T Consensus 114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~-Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCC-KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHH-hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 356889999988875 23345555666666665 457789999999999999998852 222 45555555
Q ss_pred HHHHHhhcCCCCCCh-------------hhhhhHHHHHHHHhcc----CChhHHHHHHHHHHHhccCCcHHHHHHHHhCc
Q 043116 178 WTLSNFCRGKPQPPF-------------NQIRPALRVLAQLIRS----NDEKVLTDACRALAYLADGTNDKIQAVIEAGV 240 (482)
Q Consensus 178 ~~L~~L~~~~~~~~~-------------~~~~~~~~~L~~ll~~----~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~ 240 (482)
.++-.+......... .....-+..+++.+.+ .++.+....++.|.+++.++.+..+.+++.
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-- 270 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-- 270 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--
Confidence 555555543211111 0123446666666654 468999999999999999988887776652
Q ss_pred HHHHHHhhCC-----CChhhHHHHHHHHhHhhcCC------hhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHH
Q 043116 241 CPRLVKLLGH-----RSRLVLTAALRTIGNIVTGD------DFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNI 309 (482)
Q Consensus 241 l~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~~------~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl 309 (482)
+...+.+=.- ++..+ .+.++..++.+- ......+++.|++...+..|... -|..
T Consensus 271 F~p~l~f~~~D~~~~~~~~~---~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~-~P~~----------- 335 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDEQF---KLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH-FPSL----------- 335 (802)
T ss_pred HHHhcChhhcccccCchHHH---HHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh-Cccc-----------
Confidence 2222222111 12222 244444444321 25566788889999888888766 4433
Q ss_pred hcCCHHHHHHHHHcCChHHHHHHHh
Q 043116 310 TAGNREQIQAVIDAGLIGPIVNLLQ 334 (482)
Q Consensus 310 ~~~~~~~~~~l~~~~~i~~L~~ll~ 334 (482)
...+...+..++....+|..+++|.
T Consensus 336 ~~~~s~eWk~~l~~psLp~iL~lL~ 360 (802)
T PF13764_consen 336 KNTDSPEWKEFLSRPSLPYILRLLR 360 (802)
T ss_pred ccCCCHHHHHHhcCCcHHHHHHHHH
Confidence 1112334677777778888777776
No 187
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.13 Score=49.67 Aligned_cols=151 Identities=17% Similarity=0.195 Sum_probs=102.2
Q ss_pred HHHHHhccCChhHHHHHHHHHHH--hccCCcHHHHHHHHhCcHHHHHHh-hCCCChhhHHHHHHHHhHhhcCChhhHHHH
Q 043116 201 VLAQLIRSNDEKVLTDACRALAY--LADGTNDKIQAVIEAGVCPRLVKL-LGHRSRLVLTAALRTIGNIVTGDDFQTQCI 277 (482)
Q Consensus 201 ~L~~ll~~~~~~~~~~~l~~L~~--l~~~~~~~~~~~~~~~~l~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~l 277 (482)
.+.+++.+.++-.|.....++.. ....+ .+++..++.. .++.+.+||+.|..+|+-++..++.
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTgn---------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~----- 585 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTGN---------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD----- 585 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCCc---------chhHhhhheeecccCchHHHHHHHHheeeeEecCcc-----
Confidence 55667777777777666555432 22222 2556777776 6778899999999999998875544
Q ss_pred HhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCH
Q 043116 278 INCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTH 357 (482)
Q Consensus 278 ~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~ 357 (482)
.+...+++|..+.++.||...+.+|+-.|.++.... .+..|-.++.+.+.-+|..|+.+++-+...+++
T Consensus 586 ----~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~ 654 (926)
T COG5116 586 ----LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNP 654 (926)
T ss_pred ----hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCc
Confidence 455677778777789999999999999888544421 344445556677888999999999988876655
Q ss_pred HHHHHHHHcCChHHHHhcCCC
Q 043116 358 EQIKHLVREGCVKPLCDLLPC 378 (482)
Q Consensus 358 ~~~~~l~~~~~l~~L~~ll~~ 378 (482)
+.-..+ .++...+.++..+
T Consensus 655 ~Lnp~v--~~I~k~f~~vI~~ 673 (926)
T COG5116 655 ELNPNV--KRIIKKFNRVIVD 673 (926)
T ss_pred ccChhH--HHHHHHHHHHHhh
Confidence 432221 1244555555443
No 188
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.59 E-value=0.27 Score=48.84 Aligned_cols=108 Identities=19% Similarity=0.200 Sum_probs=80.8
Q ss_pred hhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC-hh
Q 043116 194 QIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGD-DF 272 (482)
Q Consensus 194 ~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~ 272 (482)
...+.+..++....+++..+|..++..|..+.....+. ...+-.++...+..-+.+..|.||..|+.+|..+-... ++
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~ei-dd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEI-DDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccccc-CHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 55677777777788899999999999999988643322 22333467778888889999999999999999987422 22
Q ss_pred hHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHH
Q 043116 273 QTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISN 308 (482)
Q Consensus 273 ~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~n 308 (482)
. ..+...+..+++..++++||+.|...+.+
T Consensus 161 e------~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 161 E------CPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred c------ccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 2 23566788889888899999987655543
No 189
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.55 E-value=0.91 Score=44.78 Aligned_cols=253 Identities=14% Similarity=0.101 Sum_probs=143.1
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHH
Q 043116 40 DNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFV 119 (482)
Q Consensus 40 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~ 119 (482)
..+.+..++..|..+..... . .......- +.+.+.....++.-..-+.+|..++.+..+. ...+.++.+.|.
T Consensus 42 p~e~R~~~~~ll~~~i~~~~-~-~~~~~R~~----fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~ 113 (464)
T PF11864_consen 42 PSEARRAALELLIACIKRQD-S-SSGLMRAE----FFRDISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLL 113 (464)
T ss_pred CHHHHHHHHHHHHHHHHccc-c-ccHHHHHH----HHHHHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHH
Confidence 46778888888888887642 1 11111211 2223333222333334455666666655444 225667777777
Q ss_pred HhhCCC---------------------------CHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhH
Q 043116 120 KLLASP---------------------------SDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSM 172 (482)
Q Consensus 120 ~ll~~~---------------------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~ 172 (482)
..+..- +.......+..+.|+...+...-+.-.-.+.+..++.+...+.....
T Consensus 114 ~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~d 193 (464)
T PF11864_consen 114 SWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDD 193 (464)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHH
Confidence 666310 12223344555556654432211111122356666666656666666
Q ss_pred HHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCC--
Q 043116 173 LRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH-- 250 (482)
Q Consensus 173 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-- 250 (482)
...++.++-.+.... .........++..|+...... +....+-.++.||+...... ..+..|..+|.+
T Consensus 194 i~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~ 263 (464)
T PF11864_consen 194 IEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPD 263 (464)
T ss_pred HHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccC
Confidence 677777777777664 233444566677777664433 56666777888888543221 235677777732
Q ss_pred ----CChhhHHHHHHHHhHhhcCChhhHHHHHh-c--CchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 043116 251 ----RSRLVLTAALRTIGNIVTGDDFQTQCIIN-C--GALRYLLGLLIHNHNKSIKKEVCWIISNITA 311 (482)
Q Consensus 251 ----~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~--~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 311 (482)
++..+..-|+..+..+..+..+....-+. . -+++.+...++.+ ++.+-.+....+.++..
T Consensus 264 ~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 264 PQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLLD 330 (464)
T ss_pred ccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHHh
Confidence 23456778888888887755222111111 1 2788899999988 77788888888888873
No 190
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.52 E-value=0.16 Score=48.16 Aligned_cols=145 Identities=14% Similarity=0.222 Sum_probs=104.9
Q ss_pred CcHHHHHh-cCCHHHHHHhhcCCCC--hHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhC-C---CCHHHHHHH
Q 043116 61 SPIEKVIQ-SGVVPRFVEFLMREDY--PQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLA-S---PSDDVREQA 133 (482)
Q Consensus 61 ~~~~~~~~-~g~~~~L~~ll~~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~---~~~~~~~~a 133 (482)
...+-+++ ..+...|...+++... +.+-..|+.++..+....|..-..+.+.|+++.+++.+. . ++.++....
T Consensus 96 ~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~l 175 (379)
T PF06025_consen 96 DRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSL 175 (379)
T ss_pred cccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHH
Confidence 33455556 5566777777776642 688999999999999999999999999999999999887 3 467777777
Q ss_pred HHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhh------hHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHh
Q 043116 134 VWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKL------SMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLI 206 (482)
Q Consensus 134 ~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~------~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll 206 (482)
-.+|+.+|-+.. ..+.+.+.+.++.++.++.+.... +.....-..+-.|.++.|.........++..+-++.
T Consensus 176 P~~l~AicLN~~-Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ii~~l~~l~ 253 (379)
T PF06025_consen 176 PNVLSAICLNNR-GLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDAIIKILDRLV 253 (379)
T ss_pred HHHHhHHhcCHH-HHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence 889999996654 457777889999999988433211 344445566777888877666665555555544443
No 191
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=1.1 Score=45.01 Aligned_cols=297 Identities=16% Similarity=0.121 Sum_probs=166.7
Q ss_pred HHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC----C---CChHHHHHHHHHHHHHhC--CChHhHHHHHhCCCh
Q 043116 45 LEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMR----E---DYPQLQFEAARALTNIAS--GTSENTKVAIDHGAV 115 (482)
Q Consensus 45 ~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~----~---~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i 115 (482)
..|+..+....+..+. -.-.|+++.+...+.. + +++.-.+.|++.++++.. .-+.....+++.-++
T Consensus 388 laal~fl~~~~sKrke-----~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv 462 (970)
T COG5656 388 LAALFFLIISKSKRKE-----ETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIV 462 (970)
T ss_pred HHHHHHHHHHhcccch-----hhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 3455555555544311 2235788888888831 1 224455677888888765 333334445555567
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChh--
Q 043116 116 PIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFN-- 193 (482)
Q Consensus 116 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~-- 193 (482)
+.++..++++..-++..|+..++.+..+- ++...-..+.+...+.+ .+.+-+++..|+.++..+..+. .....
T Consensus 463 ~hv~P~f~s~ygfL~Srace~is~~eeDf---kd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~-q~h~k~s 537 (970)
T COG5656 463 NHVIPAFRSNYGFLKSRACEFISTIEEDF---KDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNE-QSHEKFS 537 (970)
T ss_pred HHhhHhhcCcccchHHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhch-hhhHHHH
Confidence 77778888888889999999999995332 22222333556667777 4467788888999998888775 22222
Q ss_pred -hhhhHHHHHHHHhccCChhHHHHHHHHHH-HhccCC----cHHHHHHHHhCcHHHHHHhhCCCC------hhhHHHHHH
Q 043116 194 -QIRPALRVLAQLIRSNDEKVLTDACRALA-YLADGT----NDKIQAVIEAGVCPRLVKLLGHRS------RLVLTAALR 261 (482)
Q Consensus 194 -~~~~~~~~L~~ll~~~~~~~~~~~l~~L~-~l~~~~----~~~~~~~~~~~~l~~L~~ll~~~~------~~v~~~a~~ 261 (482)
...+.++.++.+-+.-+.++...+...+. ..++.- ++....+.+ .++.....++..++ ++-+..|.+
T Consensus 538 ahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~-qFlkiaq~l~ens~d~~s~vDDKqmaasG 616 (970)
T COG5656 538 AHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVR-QFLKIAQSLLENSSDTSSVVDDKQMAASG 616 (970)
T ss_pred hhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHH-HHHHHHHHHHcCCccccccccHHHHHHHH
Confidence 22445555555555556666666555443 222221 111111111 22333333343221 123444555
Q ss_pred HHhHhhc---C---ChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc
Q 043116 262 TIGNIVT---G---DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQD 335 (482)
Q Consensus 262 ~L~~l~~---~---~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~ 335 (482)
+|..+.. . .+...+. .+....|.+--++.+. -.++-.+|+..+-++.....+ +..+ .-|+++.+.+++.+
T Consensus 617 iL~T~~smiLSlen~p~vLk~-le~slypvi~Filkn~-i~dfy~Ea~dildg~tf~ske-I~pi-mwgi~Ell~~~l~~ 692 (970)
T COG5656 617 ILRTIESMILSLENRPLVLKY-LEVSLYPVISFILKNE-ISDFYQEALDILDGYTFMSKE-IEPI-MWGIFELLLNLLID 692 (970)
T ss_pred HHHHHHHHHHhcccchHHHHH-HHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHH-hhhh-hhHHHHHHHhcccc
Confidence 5554432 1 2222222 2335666666666766 777888888888777653222 1111 12455555555555
Q ss_pred CCh-hHHHHHHHHHHHhhcCCC
Q 043116 336 AEF-GTKKEAAWVISNATSGGT 356 (482)
Q Consensus 336 ~~~-~~~~~a~~aL~~l~~~~~ 356 (482)
... .....+.-++.|+...|.
T Consensus 693 ~~t~~y~ee~~~al~nfityG~ 714 (970)
T COG5656 693 EITAVYSEEVADALDNFITYGK 714 (970)
T ss_pred cchhhhHHHHHHHHHHHHHhCc
Confidence 543 667788899999987663
No 192
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.48 E-value=1 Score=44.47 Aligned_cols=287 Identities=13% Similarity=0.085 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHh
Q 043116 42 KVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKL 121 (482)
Q Consensus 42 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 121 (482)
..+..|+..|+......+...+..+. ...-.++..+..++.|..+...|..+......... ....-.... +
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~~iW-----~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~-~~R~~fF~~---I 75 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIEEIW-----YAAKDLIDPNQPSEARRAALELLIACIKRQDSSSG-LMRAEFFRD---I 75 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHH-----HHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH-HHHHHHHHH---H
Confidence 45667777777777665332233222 22345665555467899999998888874433111 111011111 1
Q ss_pred hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchh--------------------------hhhHHHH
Q 043116 122 LASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHA--------------------------KLSMLRT 175 (482)
Q Consensus 122 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--------------------------~~~~~~~ 175 (482)
-....++-...-+.+|..|+.+.... ...+.+..+.+..-+...- +......
T Consensus 76 ~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (464)
T PF11864_consen 76 SDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSD 153 (464)
T ss_pred hcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHH
Confidence 22333433445566666676544333 1234556666655552111 2233445
Q ss_pred HHHHHHHhhcCC-CCCChhhhhhHHHHHHHHhc-cCChhHHHHHHHHHHHhccC---CcHHHHHHHHhCcHHHHHHhhCC
Q 043116 176 ATWTLSNFCRGK-PQPPFNQIRPALRVLAQLIR-SNDEKVLTDACRALAYLADG---TNDKIQAVIEAGVCPRLVKLLGH 250 (482)
Q Consensus 176 a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~ll~-~~~~~~~~~~l~~L~~l~~~---~~~~~~~~~~~~~l~~L~~ll~~ 250 (482)
....+.++.... .........+++..++.+.. +.++.....++..+-.+... +++... .++..|.....
T Consensus 154 ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi~~- 227 (464)
T PF11864_consen 154 LLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSIVN- 227 (464)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhHhc-
Confidence 566666666655 33444555666776666643 33444455666555554432 111111 22334444422
Q ss_pred CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCC-----CchhHHHHHHHHHHHHhcCCHHHHHHHHH-cC
Q 043116 251 RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHN-----HNKSIKKEVCWIISNITAGNREQIQAVID-AG 324 (482)
Q Consensus 251 ~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~ 324 (482)
..+....+-.++.||+...-.+ ..+..|..+|.++ ++..+.+.|...+..+..+..+....-+. .-
T Consensus 228 -~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~ 299 (464)
T PF11864_consen 228 -SVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSP 299 (464)
T ss_pred -ccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccH
Confidence 2367777888999998744332 2355677777321 14566678888888888754222222222 22
Q ss_pred --ChHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 043116 325 --LIGPIVNLLQDAEFGTKKEAAWVISNATS 353 (482)
Q Consensus 325 --~i~~L~~ll~~~~~~~~~~a~~aL~~l~~ 353 (482)
+++.+...++..++.+-..++..+.++..
T Consensus 300 ~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 300 SSVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred HHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 78888888888888888888888888873
No 193
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.37 E-value=0.14 Score=45.06 Aligned_cols=107 Identities=23% Similarity=0.243 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCC-CCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHH
Q 043116 340 TKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP-CPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVE 418 (482)
Q Consensus 340 ~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~ 418 (482)
....|+..|.-++-- .|.....+-+...++.|+++++ ...+.+...++.+|..++-..+.. .+.|+
T Consensus 107 li~~aL~vLQGl~LL-Hp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N------------~r~FE 173 (257)
T PF08045_consen 107 LIALALRVLQGLCLL-HPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPEN------------QRDFE 173 (257)
T ss_pred HHHHHHHHHHHHHHc-CchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHH------------HHHHH
Confidence 344566677766664 4555666678899999999995 456789999999999998765553 77899
Q ss_pred HhchHHHHHHhhcC--CCHHHHHHHHHHHHHhcCCCCCCCCCC
Q 043116 419 EAEGLEKIENLQSH--DNNDIHEMSVKILETYWCGRVVGPQPG 459 (482)
Q Consensus 419 ~~~~~~~l~~l~~~--~~~~v~~~a~~~l~~~~~~~~~~~~~~ 459 (482)
+.+|++.+..+..+ -+.+++-+....+-.|+.+|.....++
T Consensus 174 ~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~~~~~~ 216 (257)
T PF08045_consen 174 ELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETPSIPPG 216 (257)
T ss_pred HhCCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCCCCCcc
Confidence 99999999999765 468888999999988888887765543
No 194
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.34 E-value=0.037 Score=57.74 Aligned_cols=142 Identities=13% Similarity=0.154 Sum_probs=110.2
Q ss_pred cHHHHHHhhCC----CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH
Q 043116 240 VCPRLVKLLGH----RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNRE 315 (482)
Q Consensus 240 ~l~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~ 315 (482)
+.|.++...+. .+|.++..|.-+|+.++.-+...+. .-++.++.++...+++.+|..++-+++.++..-|.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 44455555533 5688999999999999886665544 45788999999665999999999999999875555
Q ss_pred HHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 043116 316 QIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENIL 395 (482)
Q Consensus 316 ~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~ 395 (482)
.+. ..-+.|...+.++++.+|+.|..+|.++..++ .+.-.|.+..+.-++.+++.+++..|-..+.-+.
T Consensus 995 lie-----~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd------miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 995 LIE-----PWTEHLYRRLRDESPSVRKTALLVLSHLILND------MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred ccc-----hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh------hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 332 35567888899999999999999999998742 3345789999999999999999988876555555
Q ss_pred Hh
Q 043116 396 KV 397 (482)
Q Consensus 396 ~~ 397 (482)
..
T Consensus 1064 ~k 1065 (1251)
T KOG0414|consen 1064 SK 1065 (1251)
T ss_pred hc
Confidence 43
No 195
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=96.33 E-value=2.2 Score=48.67 Aligned_cols=264 Identities=12% Similarity=0.045 Sum_probs=143.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCC--CCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCCh
Q 043116 38 SDDNKVQLEATTLFRKMLSFDR--NSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAV 115 (482)
Q Consensus 38 s~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 115 (482)
+.+..+...|+..|+.++..-- .+....-.+..++.+|...+.+....++++..++|+.++...... -+..| -
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~----nIkSG-W 1222 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN----NVKSG-W 1222 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----hhhcC-c
Confidence 4467788889998888876431 111122335567888888787665589999999999998763222 23333 3
Q ss_pred HHHHHh----hCCCCHHHHHHHHHHHHHhhCCChh-h----HHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhc-
Q 043116 116 PIFVKL----LASPSDDVREQAVWALGNVAGDSSR-C----RDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCR- 185 (482)
Q Consensus 116 ~~L~~l----l~~~~~~~~~~a~~~L~~l~~~~~~-~----~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~- 185 (482)
+.+..+ ..+.++.+...|..++..++.+.-. . ...+. ..+..+.....+..+.++--.|+..|++++.
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~--DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT--DCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH--HHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence 444443 3456788888888888877633111 0 11121 1344454444333334444444444543311
Q ss_pred ---CC-----C------------------CC-----Ch----hhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccC---
Q 043116 186 ---GK-----P------------------QP-----PF----NQIRPALRVLAQLIRSNDEKVLTDACRALAYLADG--- 227 (482)
Q Consensus 186 ---~~-----~------------------~~-----~~----~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~--- 227 (482)
.. . .. .. ...-.++..+..+..+++++||..|+..|..+...
T Consensus 1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076 1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence 10 0 00 00 11123334444556678899999999999877632
Q ss_pred --CcHHHHHHHHhCcHHHHHHhhCCC------------------C-h-------hhHHHHHHHHhHhhcCChhhHHHHHh
Q 043116 228 --TNDKIQAVIEAGVCPRLVKLLGHR------------------S-R-------LVLTAALRTIGNIVTGDDFQTQCIIN 279 (482)
Q Consensus 228 --~~~~~~~~~~~~~l~~L~~ll~~~------------------~-~-------~v~~~a~~~L~~l~~~~~~~~~~l~~ 279 (482)
+++....++. +++-.+...++.. + . +....|++.+.++....-+....++
T Consensus 1381 ~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L- 1458 (1780)
T PLN03076 1381 LFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLL- 1458 (1780)
T ss_pred cCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 2334444444 3344444333210 0 0 1222334444444332222222222
Q ss_pred cCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 043116 280 CGALRYLLGLLIHNHNKSIKKEVCWIISNITA 311 (482)
Q Consensus 280 ~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 311 (482)
.+++..|...+..+ +..+.+.++.+|.++..
T Consensus 1459 ~~~l~ll~~ci~q~-n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076 1459 KKVLMLLVSFIKRP-HQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred HHHHHHHHHHHcCc-hHHHHHHHHHHHHHHHH
Confidence 25666666666767 78888888888888875
No 196
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.33 E-value=0.077 Score=56.96 Aligned_cols=162 Identities=16% Similarity=0.157 Sum_probs=109.5
Q ss_pred HHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChh
Q 043116 175 TATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRL 254 (482)
Q Consensus 175 ~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 254 (482)
.+.|+...+....+. ...+.+.+..++..+..+...+|..|++||..+.+.++.. +....+-..+..-+.+....
T Consensus 796 ~a~li~~~la~~r~f--~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~Dssas 870 (1692)
T KOG1020|consen 796 DAKLIVFYLAHARSF--SQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSSAS 870 (1692)
T ss_pred hHHHHHHHHHhhhHH--HHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccchhH
Confidence 455555555544321 1223677888888889889999999999999999877642 22333444555666778889
Q ss_pred hHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 043116 255 VLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ 334 (482)
Q Consensus 255 v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~ 334 (482)
||..|+..+|......++.... ....+..-+.+. ...||+.+..++..+|...|+. .. +.....+++.
T Consensus 871 VREAaldLvGrfvl~~~e~~~q-----yY~~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf-~~-----i~~~cakmlr 938 (1692)
T KOG1020|consen 871 VREAALDLVGRFVLSIPELIFQ-----YYDQIIERILDT-GVSVRKRVIKILRDICEETPDF-SK-----IVDMCAKMLR 938 (1692)
T ss_pred HHHHHHHHHhhhhhccHHHHHH-----HHHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCCh-hh-----HHHHHHHHHH
Confidence 9999999999888877766553 455678778777 8889999999999999855542 11 1222223332
Q ss_pred ---cCChhHHHHHHHHHHHhhc
Q 043116 335 ---DAEFGTKKEAAWVISNATS 353 (482)
Q Consensus 335 ---~~~~~~~~~a~~aL~~l~~ 353 (482)
++...+++-+..++.++-.
T Consensus 939 Rv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 939 RVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred HhccchhHHHHHHHHHHHHHhc
Confidence 3333366666666666643
No 197
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.30 E-value=0.022 Score=46.66 Aligned_cols=147 Identities=20% Similarity=0.169 Sum_probs=98.4
Q ss_pred hHHHHHHHcc-hhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHH
Q 043116 157 LIPLLAELNE-HAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAV 235 (482)
Q Consensus 157 i~~l~~~l~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 235 (482)
+..++..+.. ...++++..+.-++..+... ........+-+.+-..+...+.+-...+..++..+-...++....+
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~---~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLLDA---AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 4455555533 45667777777777777311 1111223344455556666666677788888888887777665555
Q ss_pred H-HhCcHHHHHHhhC--CCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchh-HHHHHHHHHHH
Q 043116 236 I-EAGVCPRLVKLLG--HRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKS-IKKEVCWIISN 308 (482)
Q Consensus 236 ~-~~~~l~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~-v~~~a~~~L~n 308 (482)
+ ..|+++.++.++. ..+..++..++.+|..=+ .++..+..+...++++|-+.++.+++.. +|..|+-+|+-
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc--~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAAC--IDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT--TSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 5 4589999999998 778889999999887644 3444455666679999999997664666 88888877764
No 198
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=96.27 E-value=1 Score=42.19 Aligned_cols=157 Identities=15% Similarity=0.119 Sum_probs=115.0
Q ss_pred HHHHHHhhCCCChhhHHHHHHHHhHhhc-CChhhHHHHHhc-Cc-hHHHHHHhcCCC----c--------hhHHHHHHHH
Q 043116 241 CPRLVKLLGHRSRLVLTAALRTIGNIVT-GDDFQTQCIINC-GA-LRYLLGLLIHNH----N--------KSIKKEVCWI 305 (482)
Q Consensus 241 l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~-~~-i~~L~~ll~~~~----~--------~~v~~~a~~~ 305 (482)
+..+.+.|+...+.+...+++.|..++. ......+.+.+. ++ .+.+-+++.... + +.+|......
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6788889998888899999999999998 555666666654 22 234445543210 1 2788887766
Q ss_pred HHHHhc-CCHHHHHHHHH-cCChHHHHHHHhcCChhHHHHHHHHHHHhhcCC---CHHHHHHHHHcCChHHHHhcCCCCC
Q 043116 306 ISNITA-GNREQIQAVID-AGLIGPIVNLLQDAEFGTKKEAAWVISNATSGG---THEQIKHLVREGCVKPLCDLLPCPD 380 (482)
Q Consensus 306 L~nl~~-~~~~~~~~l~~-~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~---~~~~~~~l~~~~~l~~L~~ll~~~~ 380 (482)
+..+.. +++.....+++ .+.+..+.+-+..+++++....+.++..-+... .+.....+.....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 666665 67777777774 667888888888888999999999998643322 2444556667778999999888877
Q ss_pred H----HHHHHHHHHHHHHHHh
Q 043116 381 P----QIVTVCLIGLENILKV 397 (482)
Q Consensus 381 ~----~v~~~~l~~L~~l~~~ 397 (482)
+ .+...+-..|..++..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred CcccchHHHHHHHHHHHHhcC
Confidence 7 8888888888888864
No 199
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=1.6 Score=43.93 Aligned_cols=315 Identities=17% Similarity=0.118 Sum_probs=167.3
Q ss_pred hhccHHHHHHHhc-C-------CCHHHHHHHHHHHHHHhc--CCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHH
Q 043116 25 KFEILPTMVAGVW-S-------DDNKVQLEATTLFRKMLS--FDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARA 94 (482)
Q Consensus 25 ~~~~i~~l~~~l~-s-------~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~ 94 (482)
-.|.++.+...++ + +++.....|++.+.++.+ .. .....-+.+.-+++.++..++++. --++..|+..
T Consensus 406 fqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk-~sp~an~me~fiv~hv~P~f~s~y-gfL~Srace~ 483 (970)
T COG5656 406 FQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITK-MSPAANVMEYFIVNHVIPAFRSNY-GFLKSRACEF 483 (970)
T ss_pred hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhcc-CchHHHHHHHHHHHHhhHhhcCcc-cchHHHHHHH
Confidence 4567788888883 1 123444567777777766 33 333455555556777777778877 6889999999
Q ss_pred HHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHh--CChHHHHHHHcchhhhhH
Q 043116 95 LTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQ--GALIPLLAELNEHAKLSM 172 (482)
Q Consensus 95 L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~l~~~l~~~~~~~~ 172 (482)
+..+.. +.++.-+-....+....++++.+-.++..|+-++.-+..+.. ....+.+. +.++.++.+- +.-+.+.
T Consensus 484 is~~ee---Dfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q-~h~k~sahVp~tmekLLsLS-n~feiD~ 558 (970)
T COG5656 484 ISTIEE---DFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ-SHEKFSAHVPETMEKLLSLS-NTFEIDP 558 (970)
T ss_pred HHHHHH---hcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh-hhHHHHhhhhHHHHHHHHhc-ccccchH
Confidence 999954 333333333445666777877777888888888888875542 22333221 1223333332 3334444
Q ss_pred HHHHHHHHHHhhcCC-CCCChhhhhhHHHHH----HHHhccC-C-----hhHHHHHHHHHHHhcc------CCcHHHHHH
Q 043116 173 LRTATWTLSNFCRGK-PQPPFNQIRPALRVL----AQLIRSN-D-----EKVLTDACRALAYLAD------GTNDKIQAV 235 (482)
Q Consensus 173 ~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~L----~~ll~~~-~-----~~~~~~~l~~L~~l~~------~~~~~~~~~ 235 (482)
...+...+..-..+. ..-.......++... ..++.++ + ++-+..|.+.|..+.+ +.+...+ -
T Consensus 559 LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk-~ 637 (970)
T COG5656 559 LSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLK-Y 637 (970)
T ss_pred HHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHH-H
Confidence 544444433322221 111112222333322 2233222 1 2334445554443331 1222211 1
Q ss_pred HHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCH
Q 043116 236 IEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA-GNR 314 (482)
Q Consensus 236 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~ 314 (482)
......|.+--.+.+.-.++-.+|+.++-+......+... +--|+.+.+.+++.+......-.+++-++.|+.. |..
T Consensus 638 le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~p--imwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ 715 (970)
T COG5656 638 LEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEP--IMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKT 715 (970)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhh--hhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCcc
Confidence 2224455555566666677778888887766543333221 1236777777777777323667788899999986 322
Q ss_pred HHHHHHHHcCC-----hHHHHHHHhcCCh--hHHHHHHHHHHHhhc
Q 043116 315 EQIQAVIDAGL-----IGPIVNLLQDAEF--GTKKEAAWVISNATS 353 (482)
Q Consensus 315 ~~~~~l~~~~~-----i~~L~~ll~~~~~--~~~~~a~~aL~~l~~ 353 (482)
+ +.+.|. +......+.+++. +-...++..+..++.
T Consensus 716 e----f~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~L 757 (970)
T COG5656 716 E----FMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLIL 757 (970)
T ss_pred c----cccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHH
Confidence 2 223332 2223333334433 344556666655543
No 200
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=96.19 E-value=0.59 Score=44.33 Aligned_cols=275 Identities=16% Similarity=0.124 Sum_probs=139.8
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHH-HHHHHHhhCCChhhHH
Q 043116 72 VPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLAS-PSDDVREQA-VWALGNVAGDSSRCRD 149 (482)
Q Consensus 72 ~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a-~~~L~~l~~~~~~~~~ 149 (482)
+..++.=+.+.....+|..++--|+.-+. +++++..+..+|..+.+.+.+.+ ++..+...+ +.++.-++.+.. ...
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence 55566666644446889999988988887 89999999999999999999854 333243333 444444444433 233
Q ss_pred HHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc---------cCChhHHHHHHHH
Q 043116 150 FVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR---------SNDEKVLTDACRA 220 (482)
Q Consensus 150 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~---------~~~~~~~~~~l~~ 220 (482)
.+.+.+....++.++.-.....+..... ......-..........+...+. ......+..++.+
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~-------~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~ 173 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD-------SSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA 173 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchh-------hhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence 3344445555566663000000000000 00000000001112221222221 1122334444444
Q ss_pred HHHhc--------------cCCcHHHHHHHHhCcHHHHHHhhC----CC-------C-----hhhHHHHHHHHhHhhcCC
Q 043116 221 LAYLA--------------DGTNDKIQAVIEAGVCPRLVKLLG----HR-------S-----RLVLTAALRTIGNIVTGD 270 (482)
Q Consensus 221 L~~l~--------------~~~~~~~~~~~~~~~l~~L~~ll~----~~-------~-----~~v~~~a~~~L~~l~~~~ 270 (482)
+-.++ ...+...+.+...|++..++..+. .. . ......++++|-+.+..+
T Consensus 174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~ 253 (361)
T PF07814_consen 174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS 253 (361)
T ss_pred HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 44442 011112233555677888888774 11 1 124556788888887766
Q ss_pred hhhHHHHHhc--CchHHHH-HHhcCCC--chhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-----------
Q 043116 271 DFQTQCIINC--GALRYLL-GLLIHNH--NKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ----------- 334 (482)
Q Consensus 271 ~~~~~~l~~~--~~i~~L~-~ll~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~----------- 334 (482)
......+... +.++.+. .++.... .......++..+.|+..++++....+...++...+..+..
T Consensus 254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~ 333 (361)
T PF07814_consen 254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNY 333 (361)
T ss_pred ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccc
Confidence 6555544433 2332222 2222220 3344567888999998877777666665444333222211
Q ss_pred ---cCChhHHHHHHHHHHHhhcCC
Q 043116 335 ---DAEFGTKKEAAWVISNATSGG 355 (482)
Q Consensus 335 ---~~~~~~~~~a~~aL~~l~~~~ 355 (482)
+...+...-++.++.|++.+.
T Consensus 334 ~~~~~~~D~~IL~Lg~LINL~E~s 357 (361)
T PF07814_consen 334 VPEESSFDILILALGLLINLVEHS 357 (361)
T ss_pred ccccccchHHHHHHHhHHHheeeC
Confidence 122345666777777777653
No 201
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=96.13 E-value=0.96 Score=40.62 Aligned_cols=203 Identities=12% Similarity=0.072 Sum_probs=142.7
Q ss_pred HHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChh---hh---hhHHHHHHHHhccCChhHHHHHHHHHH
Q 043116 149 DFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFN---QI---RPALRVLAQLIRSNDEKVLTDACRALA 222 (482)
Q Consensus 149 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~---~~---~~~~~~L~~ll~~~~~~~~~~~l~~L~ 222 (482)
..+.+.|.+..++..+ ...+-+.+..++.+..++-+........ .. ..++..++.--.. .+++...+-..+.
T Consensus 73 qef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR 150 (342)
T ss_pred HHHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence 4456778888999998 6677788888999999998876322221 11 2344444444111 3556555555555
Q ss_pred HhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCc----hHHHHHHhcCCCchhH
Q 043116 223 YLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGA----LRYLLGLLIHNHNKSI 298 (482)
Q Consensus 223 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~----i~~L~~ll~~~~~~~v 298 (482)
....+ +...+.+..+.-+......+..+.-++...|..+...+.......+..++..+. .+..-.+++++ +.-+
T Consensus 151 Ecirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyvt 228 (342)
T KOG1566|consen 151 ECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYVT 228 (342)
T ss_pred HHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-ceeh
Confidence 55543 345566777777788888888888889999999999888766655555554432 33466677777 9999
Q ss_pred HHHHHHHHHHHhcC--CHHHH-HHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCC
Q 043116 299 KKEVCWIISNITAG--NREQI-QAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGG 355 (482)
Q Consensus 299 ~~~a~~~L~nl~~~--~~~~~-~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~ 355 (482)
+..+...++.+..+ +.... +++-+..-+..++.+|+++...+|.+|.....-+..+.
T Consensus 229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 99999999999863 33333 33444567899999999999999999999988887754
No 202
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.06 E-value=0.01 Score=33.30 Aligned_cols=29 Identities=34% Similarity=0.426 Sum_probs=25.6
Q ss_pred cHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 043116 240 VCPRLVKLLGHRSRLVLTAALRTIGNIVT 268 (482)
Q Consensus 240 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 268 (482)
+++.+++++++++++||..|+.+|+.++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 36889999999999999999999999875
No 203
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=96.05 E-value=2.3 Score=44.26 Aligned_cols=91 Identities=11% Similarity=0.166 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHh
Q 043116 296 KSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ-DAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCD 374 (482)
Q Consensus 296 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ 374 (482)
+.++..+.-+++++|.......+ ..+|.|++-|. +....+|.+.+.+++.++..-+ . .-...++.+..
T Consensus 945 ~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-----a-m~d~YiP~I~~ 1013 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT-----A-MTDRYIPMIAA 1013 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH-----H-HHHHhhHHHHH
Confidence 45677788889999875444222 36788888777 4567788888888888876311 1 22347999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHh
Q 043116 375 LLPCPDPQIVTVCLIGLENILKV 397 (482)
Q Consensus 375 ll~~~~~~v~~~~l~~L~~l~~~ 397 (482)
-|.++++-|+.+++..|.+++..
T Consensus 1014 ~L~Dp~~iVRrqt~ilL~rLLq~ 1036 (1529)
T KOG0413|consen 1014 SLCDPSVIVRRQTIILLARLLQF 1036 (1529)
T ss_pred HhcCchHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999864
No 204
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.00 E-value=2.8 Score=46.00 Aligned_cols=72 Identities=10% Similarity=0.125 Sum_probs=54.8
Q ss_pred CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcC
Q 043116 281 GALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSG 354 (482)
Q Consensus 281 ~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~ 354 (482)
+++|.|-.-|.+. +..+|..|...++.+......... --....+...+.-+.+.++++|..++....++..+
T Consensus 259 ~vip~l~~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 259 AVIPQLEFELLSE-QEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN 330 (1266)
T ss_pred HHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc
Confidence 7899999999998 999999999999999864333221 00123556666666788999999999999888775
No 205
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.97 E-value=0.22 Score=43.90 Aligned_cols=102 Identities=14% Similarity=0.062 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHH
Q 043116 86 QLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAEL 164 (482)
Q Consensus 86 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l 164 (482)
.....|+++|..++--+|..+..+.....+..+++++. ...+.++..++.+|..+..+++.....+-+.+++..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 34566789999999889999999999999999999995 46789999999999999989888888999999999999999
Q ss_pred cch-hhhhHHHHHHHHHHHhhcCC
Q 043116 165 NEH-AKLSMLRTATWTLSNFCRGK 187 (482)
Q Consensus 165 ~~~-~~~~~~~~a~~~L~~L~~~~ 187 (482)
+.. .+.+++-.++.+|.-.....
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHccc
Confidence 643 45677777777766555443
No 206
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.92 E-value=0.16 Score=50.17 Aligned_cols=181 Identities=13% Similarity=0.119 Sum_probs=123.2
Q ss_pred hHHHHHHHHhcc----CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhC-CCChhhHHHHHHHHhHhhcCCh
Q 043116 197 PALRVLAQLIRS----NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLG-HRSRLVLTAALRTIGNIVTGDD 271 (482)
Q Consensus 197 ~~~~~L~~ll~~----~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~ 271 (482)
.+-|.+.+...+ +|++++..|--+|..+..-+.+... .-+|.++..|. +++|.+|.+|.-.++.++.+..
T Consensus 892 ~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN 966 (1128)
T COG5098 892 NFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN 966 (1128)
T ss_pred hhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehh
Confidence 344555555544 6788998888888877654443322 34678888885 8999999999999998876544
Q ss_pred hhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHh
Q 043116 272 FQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNA 351 (482)
Q Consensus 272 ~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l 351 (482)
..... .-..|..-|.+. +..||+.+..++.++.....- --.|-.+.+...+.++|.++...|-..+..+
T Consensus 967 ~~~de-----~t~yLyrrL~De-~~~V~rtclmti~fLilagq~-----KVKGqlg~ma~~L~deda~Isdmar~fft~~ 1035 (1128)
T COG5098 967 TTADE-----HTHYLYRRLGDE-DADVRRTCLMTIHFLILAGQL-----KVKGQLGKMALLLTDEDAEISDMARHFFTQI 1035 (1128)
T ss_pred hhhHH-----HHHHHHHHhcch-hhHHHHHHHHHHHHHHHccce-----eeccchhhhHhhccCCcchHHHHHHHHHHHH
Confidence 33332 234677778777 999999999999999863211 1247788999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHcCChHHHHhcCCC---CCHHHHHHHHHHHHHHHHhchh
Q 043116 352 TSGGTHEQIKHLVREGCVKPLCDLLPC---PDPQIVTVCLIGLENILKVGEA 400 (482)
Q Consensus 352 ~~~~~~~~~~~l~~~~~l~~L~~ll~~---~~~~v~~~~l~~L~~l~~~~~~ 400 (482)
+...+. .-+|+++.+..+-.+ ++.+ .+...+.|..++...+.
T Consensus 1036 a~KdNt------~yn~fidifs~ls~~ae~g~e~-fk~II~FLt~fI~kerh 1080 (1128)
T COG5098 1036 AKKDNT------MYNGFIDIFSTLSSDAENGQEP-FKLIIGFLTDFISKERH 1080 (1128)
T ss_pred Hhcccc------hhhhhHHHHHHcCchhhcCCCc-HHHHHHHHHHHHHHHHH
Confidence 875432 123555555444422 2222 44556667777655433
No 207
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.91 E-value=0.083 Score=36.45 Aligned_cols=66 Identities=21% Similarity=0.313 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcC
Q 043116 299 KKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ-DAEFGTKKEAAWVISNATSGGTHEQIKHLVREG 367 (482)
Q Consensus 299 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~ 367 (482)
.+.+.|+++++++. +.....+.+.++++.++++.. ++...+|-.|..+|+-++. +.+....+.+.|
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence 57899999999874 555666777899999999988 5678899999999999887 677777766655
No 208
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.90 E-value=0.82 Score=45.68 Aligned_cols=103 Identities=15% Similarity=0.161 Sum_probs=75.5
Q ss_pred CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHH
Q 043116 239 GVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAG-NREQI 317 (482)
Q Consensus 239 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~ 317 (482)
+++..+++...+++..||..+|.+|..++......-..+. .++...+..-+.+. .+.||.+|+.+|+.+-.. ..+
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~Dr-ep~VRiqAv~aLsrlQ~d~~de-- 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKDR-EPNVRIQAVLALSRLQGDPKDE-- 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhcc-CchHHHHHHHHHHHHhcCCCCC--
Confidence 5677777778888999999999999999874443333233 36777788888888 889999999999999642 111
Q ss_pred HHHHHcCChHHHHHHHh-cCChhHHHHHHHHHH
Q 043116 318 QAVIDAGLIGPIVNLLQ-DAEFGTKKEAAWVIS 349 (482)
Q Consensus 318 ~~l~~~~~i~~L~~ll~-~~~~~~~~~a~~aL~ 349 (482)
+..+...+..+++ +++++||..|+..+.
T Consensus 161 ----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 161 ----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred ----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 1246667777777 578999987765543
No 209
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.89 E-value=0.2 Score=51.88 Aligned_cols=195 Identities=11% Similarity=0.050 Sum_probs=134.3
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhh
Q 043116 118 FVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRP 197 (482)
Q Consensus 118 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~ 197 (482)
+..-+.+.+..-|..|+..+..+..... ........+.+..++.....+.+..+...++.+|..++..-.........+
T Consensus 258 l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~ 336 (815)
T KOG1820|consen 258 LETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKN 336 (815)
T ss_pred HHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHh
Confidence 3334445667777788888887774443 111111224455666666677788888889999999998765455556678
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCh-hhHHH
Q 043116 198 ALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDD-FQTQC 276 (482)
Q Consensus 198 ~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~ 276 (482)
++|.++..+....+.++..+..++-.++.... -...++.+...+++.++.++..+...+.......+ .....
T Consensus 337 v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~ 409 (815)
T KOG1820|consen 337 VFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEK 409 (815)
T ss_pred hcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcch
Confidence 89999999998888888888777776664221 11346788899999999999998888777766443 21111
Q ss_pred HHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHH
Q 043116 277 IINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA-GNREQIQAVI 321 (482)
Q Consensus 277 l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~ 321 (482)
-.-.+.++.++....+. +.+||..|..+++-+.. ...+.+..++
T Consensus 410 ~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L 454 (815)
T KOG1820|consen 410 ETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMKVHGEEVFKKLL 454 (815)
T ss_pred hhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 12236788899999888 99999999999988876 3344343333
No 210
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.88 E-value=0.13 Score=42.23 Aligned_cols=146 Identities=12% Similarity=0.073 Sum_probs=88.0
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 043116 71 VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDF 150 (482)
Q Consensus 71 ~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 150 (482)
+++.|+++++.+.+..+|.+++++|+.+..-+|...+.+.... +.- .-...+......... ..+..... +.
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~~--~~~~~~~~~~~~~l~-~~~~~~~~----ee 81 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DSK--SSENSNDESTDISLP-MMGISPSS----EE 81 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Ccc--ccccccccchhhHHh-hccCCCch----HH
Confidence 6788899998886689999999999999886666554332211 100 001111111111111 11111111 12
Q ss_pred HHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 043116 151 VLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLA 225 (482)
Q Consensus 151 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~ 225 (482)
..-..++..|++.+.+..-..-...++.++.++..............++|.++..+++.++..++..+.-|+.+.
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 222335778888885554444455677777777755444456677899999999999777788877777766654
No 211
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.85 E-value=2.5 Score=44.19 Aligned_cols=241 Identities=17% Similarity=0.204 Sum_probs=144.0
Q ss_pred hhHHHHHHHHhcc-----CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhh----CCCC----hhhHHHHHHH
Q 043116 196 RPALRVLAQLIRS-----NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLL----GHRS----RLVLTAALRT 262 (482)
Q Consensus 196 ~~~~~~L~~ll~~-----~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll----~~~~----~~v~~~a~~~ 262 (482)
.+++..++.++.+ ...+....++..|...+.. ....+.+++.+.++.|+..+ ..+. +.+.+..+.+
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 3566666666653 2345666667777766654 55677788899999888876 3434 5677777777
Q ss_pred HhHhhcCChhh-HH---HHH--------hcCchHHHHHHhcCCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHcCChH
Q 043116 263 IGNIVTGDDFQ-TQ---CII--------NCGALRYLLGLLIHNH---NKSIKKEVCWIISNITAGNREQIQAVIDAGLIG 327 (482)
Q Consensus 263 L~~l~~~~~~~-~~---~l~--------~~~~i~~L~~ll~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~ 327 (482)
+-.+....... .. ... ...-+..+++.+.++. ++.+....+.+|.+++.++++.++.+++ .+.
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~--~F~ 272 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE--HFK 272 (802)
T ss_pred HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH--HHH
Confidence 76665422111 00 000 1123666677666542 5788899999999999999998888776 333
Q ss_pred HHHHHHhc--C-ChhHHHHHHHHHHHhhcCC-----CHHHHHHHHHcCChHHHHhcCCCC--------CHH--------H
Q 043116 328 PIVNLLQD--A-EFGTKKEAAWVISNATSGG-----THEQIKHLVREGCVKPLCDLLPCP--------DPQ--------I 383 (482)
Q Consensus 328 ~L~~ll~~--~-~~~~~~~a~~aL~~l~~~~-----~~~~~~~l~~~~~l~~L~~ll~~~--------~~~--------v 383 (482)
..+++=.- . .++- ...+.+++.++..- .......+++.|++...++.+... +++ -
T Consensus 273 p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps 351 (802)
T PF13764_consen 273 PYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS 351 (802)
T ss_pred HhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence 33332221 1 1111 22355555554421 134566778889988777766421 121 2
Q ss_pred HHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhc-CCCHHHHHHHHHHHHHhcCCCC
Q 043116 384 VTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQS-HDNNDIHEMSVKILETYWCGRV 453 (482)
Q Consensus 384 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~-~~~~~v~~~a~~~l~~~~~~~~ 453 (482)
...++..|.-+..-... .+.+...+++..+..|.. +....|-..|..+|+.+-+.+.
T Consensus 352 Lp~iL~lL~GLa~gh~~-------------tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~~ 409 (802)
T PF13764_consen 352 LPYILRLLRGLARGHEP-------------TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENED 409 (802)
T ss_pred HHHHHHHHHHHHhcCHH-------------HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcChh
Confidence 33455666665543222 333345677788888843 4467788899999888777554
No 212
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.77 E-value=0.02 Score=32.10 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=25.8
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 043116 198 ALRVLAQLIRSNDEKVLTDACRALAYLAD 226 (482)
Q Consensus 198 ~~~~L~~ll~~~~~~~~~~~l~~L~~l~~ 226 (482)
++|.+.++++++++++|..++.+|+.+++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999875
No 213
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.75 E-value=1.4 Score=45.61 Aligned_cols=194 Identities=18% Similarity=0.148 Sum_probs=115.8
Q ss_pred HHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHH--HHHHHhccCCh-h
Q 043116 136 ALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALR--VLAQLIRSNDE-K 212 (482)
Q Consensus 136 ~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~--~L~~ll~~~~~-~ 212 (482)
++++++...+.....+.+.++...+...+......++...+...+.+++...+..........+. .+..++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 45577777777777888999999999999777778899999999999998764433333322222 33334444444 6
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCh-hhHHHHHhcCchHHHHHHhc
Q 043116 213 VLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDD-FQTQCIINCGALRYLLGLLI 291 (482)
Q Consensus 213 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~i~~L~~ll~ 291 (482)
.-..++..|+.+....+.... ...+..+...+......-+ .........-+.+.+..++.
T Consensus 574 rsY~~~siLa~ll~~~~~~~~-------------------~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~ 634 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTE-------------------CVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILR 634 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCcc-------------------ccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhc
Confidence 666777777766654332111 1112222222222111111 11111111112222556666
Q ss_pred CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-CChhHHHHHHHHH
Q 043116 292 HNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQD-AEFGTKKEAAWVI 348 (482)
Q Consensus 292 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~a~~aL 348 (482)
.+..+....-|.|++.+++...++..+...+.++++.+.+.-.. ....++..+...+
T Consensus 635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 66577788999999999999888877778888888888776542 2344444444443
No 214
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.67 E-value=2 Score=41.50 Aligned_cols=254 Identities=13% Similarity=0.051 Sum_probs=141.8
Q ss_pred HHHHHHHHhCCChHh-HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhh
Q 043116 91 AARALTNIASGTSEN-TKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAK 169 (482)
Q Consensus 91 a~~~L~~l~~~~~~~-~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~ 169 (482)
+-..|..+....+.. .+..++...+..|+.++.++|+.-|.....+|.++.+.-...|..+.. .+...+.+.+.....
T Consensus 110 vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~ 188 (409)
T PF01603_consen 110 VYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETER 188 (409)
T ss_dssp HHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCccc
Confidence 334555554422111 223444567888999999999999999999999987655555555543 245556666644555
Q ss_pred hhHHHHHHHHHHHhhcCCC-CCChhhhhhHHHHHHHHhccCC-hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh
Q 043116 170 LSMLRTATWTLSNFCRGKP-QPPFNQIRPALRVLAQLIRSND-EKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKL 247 (482)
Q Consensus 170 ~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~~~~L~~ll~~~~-~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 247 (482)
..-...++.++..+..+-. ........-....++.+...+. .........++......++.....+ +..+++.
T Consensus 189 ~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~ 263 (409)
T PF01603_consen 189 HNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKH 263 (409)
T ss_dssp -STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHH
T ss_pred ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHh
Confidence 5667778888888888753 2233333444556666766554 3445666667766665555443322 2233333
Q ss_pred hCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHc---C
Q 043116 248 LGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDA---G 324 (482)
Q Consensus 248 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~---~ 324 (482)
=-..++.-...-+.-+..+....+...-.-+..-+...+...+.+. +..|...|+....|= . .-.++.. .
T Consensus 264 WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~-----~-~~~li~~~~~~ 336 (409)
T PF01603_consen 264 WPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNE-----Y-FLSLISQNSRV 336 (409)
T ss_dssp S-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSH-----H-HHHHHHCTHHH
T ss_pred CCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCH-----H-HHHHHHhChHH
Confidence 2223333333345555555553332211122234677788888888 888888877554322 2 2233321 2
Q ss_pred ChHHHHHHHhc-----CChhHHHHHHHHHHHhhcCCCHH
Q 043116 325 LIGPIVNLLQD-----AEFGTKKEAAWVISNATSGGTHE 358 (482)
Q Consensus 325 ~i~~L~~ll~~-----~~~~~~~~a~~aL~~l~~~~~~~ 358 (482)
++|.+...+.. =+..++..+..++.-+... +++
T Consensus 337 i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~-d~~ 374 (409)
T PF01603_consen 337 ILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEM-DPK 374 (409)
T ss_dssp HHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTT-SHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-CHH
Confidence 56666666542 1567888888888877764 443
No 215
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.65 E-value=0.89 Score=43.92 Aligned_cols=244 Identities=12% Similarity=0.089 Sum_probs=133.8
Q ss_pred HHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC
Q 043116 66 VIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDS 144 (482)
Q Consensus 66 ~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~ 144 (482)
.++..++..|+.++.++| +.-|.....+|.++-......|..+.. .+...+.+++.. ....-...++..++.+..+-
T Consensus 129 ~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf 206 (409)
T PF01603_consen 129 YIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERHNGIAELLEILGSIINGF 206 (409)
T ss_dssp TS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS--STHHHHHHHHHHHHTT-
T ss_pred HcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcccccCHHHHHHHHHHHHhcc
Confidence 344556777888888888 888888888888876544555554443 455666666653 33344455777788777542
Q ss_pred h-hhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 043116 145 S-RCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAY 223 (482)
Q Consensus 145 ~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~ 223 (482)
+ ..++.... -....++.+.....-.........++..++..++ .....++..++..--..++.-....+.-+..
T Consensus 207 ~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp----~l~~~~i~~llk~WP~t~s~Kev~FL~el~~ 281 (409)
T PF01603_consen 207 AVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP----SLAEPVIKGLLKHWPKTNSQKEVLFLNELEE 281 (409)
T ss_dssp -SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G----GGHHHHHHHHHHHS-SS-HHHHHHHHHHHHH
T ss_pred CCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc----hhHHHHHHHHHHhCCCCCchhHHHHHHHHHH
Confidence 2 12211110 0112233333222223334455555555555432 1223344444444445566666666667777
Q ss_pred hccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhc--CchHHHHHHhcCCC----chh
Q 043116 224 LADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINC--GALRYLLGLLIHNH----NKS 297 (482)
Q Consensus 224 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~--~~i~~L~~ll~~~~----~~~ 297 (482)
+...-+...-.-+...++..+..++++++..|.+.|+..+. ++.....+.+. .++|.+...+.... +..
T Consensus 282 il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~-----n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~ 356 (409)
T PF01603_consen 282 ILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWN-----NEYFLSLISQNSRVILPIIFPALYRNSKNHWNQT 356 (409)
T ss_dssp HHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGG-----SHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTT
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHC-----CHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHH
Confidence 66544322222233356788888899999999999886553 23322222211 35667776664421 567
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHH
Q 043116 298 IKKEVCWIISNITAGNREQIQAVI 321 (482)
Q Consensus 298 v~~~a~~~L~nl~~~~~~~~~~l~ 321 (482)
++..|..++..+..-+++....+.
T Consensus 357 Vr~~a~~vl~~l~~~d~~lf~~~~ 380 (409)
T PF01603_consen 357 VRNLAQNVLKILMEMDPKLFDKCA 380 (409)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHH
Confidence 999999999999887777554433
No 216
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.54 E-value=1.1 Score=44.65 Aligned_cols=237 Identities=11% Similarity=0.034 Sum_probs=141.1
Q ss_pred HHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC---CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccC-
Q 043116 152 LSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK---PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADG- 227 (482)
Q Consensus 152 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~---~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~- 227 (482)
.+.|+++.++..-...+...+-...-.+|+.+.... .........-.-|.+..-|+..|..++.+|+..+.++-.-
T Consensus 126 iE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~ 205 (1005)
T KOG1949|consen 126 IENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIR 205 (1005)
T ss_pred HhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCC
Confidence 355677777766544443344444444455544432 1222222334456677788899999999999999887622
Q ss_pred Cc----HHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHH
Q 043116 228 TN----DKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVC 303 (482)
Q Consensus 228 ~~----~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~ 303 (482)
++ +..+.+++ .-...+.++|.++-+.+|..|..-+..+....-.....-+-..++..+..-+......+||....
T Consensus 206 dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf 284 (1005)
T KOG1949|consen 206 DPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVF 284 (1005)
T ss_pred CCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHh
Confidence 11 22333443 34578899999999999998877666554322111111111123334444344443668888888
Q ss_pred HHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHH
Q 043116 304 WIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQI 383 (482)
Q Consensus 304 ~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v 383 (482)
..|..+... |. ...+++ -++|.+-..+.+....+|.++...|..+-.. ....+..---.+.++.-|..++..+
T Consensus 285 ~gl~~~l~n-p~-sh~~le-~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v----ra~~f~~I~~~d~~l~~L~~d~~~v 357 (1005)
T KOG1949|consen 285 KGLPMILDN-PL-SHPLLE-QLLPALRYSLHDNSEKVRVAFVDMLLKIKAV----RAAKFWKICPMDHILVRLETDSRPV 357 (1005)
T ss_pred cCcHHHHcC-cc-chhHHH-HHHHhcchhhhccchhHHHHHHHHHHHHHhh----hhhhhhccccHHHHHHHHhccccHH
Confidence 888877652 22 122233 2455666667788888998888888776432 2223333344677778888888888
Q ss_pred HHHHHHHHHHHHH
Q 043116 384 VTVCLIGLENILK 396 (482)
Q Consensus 384 ~~~~l~~L~~l~~ 396 (482)
....+..+-+.+-
T Consensus 358 ~rr~~~li~~s~l 370 (1005)
T KOG1949|consen 358 SRRLVSLIFNSFL 370 (1005)
T ss_pred HHHHHHHHHHhhc
Confidence 7777776666653
No 217
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.54 E-value=0.088 Score=44.77 Aligned_cols=112 Identities=16% Similarity=0.185 Sum_probs=77.8
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC--------CCChHHHHHHHHHHHHH
Q 043116 27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMR--------EDYPQLQFEAARALTNI 98 (482)
Q Consensus 27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~--------~~~~~v~~~a~~~L~~l 98 (482)
.....+++.+++..... ..+..|...+...+..-++.+++.|++..|+.+|.. ....+....+++||..+
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 34566777776654432 445555555555423337788889999999988762 12257889999999999
Q ss_pred hCCChHhHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 043116 99 ASGTSENTKVAI-DHGAVPIFVKLLASPSDDVREQAVWALGNVA 141 (482)
Q Consensus 99 ~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 141 (482)
.. +......++ ..+++..|+..+.+++..++..++..|..+|
T Consensus 144 ~n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MN-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TS-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred Hc-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 87 555555555 4678999999999999999999999999887
No 218
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=95.52 E-value=5.9 Score=45.44 Aligned_cols=271 Identities=11% Similarity=0.080 Sum_probs=149.1
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHhCCCh---HhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 043116 76 VEFLMREDYPQLQFEAARALTNIASGTS---ENTKVAIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSSRCRDFV 151 (482)
Q Consensus 76 ~~ll~~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 151 (482)
+..-.+++ .++...|+..|..++...- +....-.+...+.++..++. +.+.++++..+.++.++..... ..+
T Consensus 1143 ~~vg~~~n-~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~nI 1218 (1780)
T PLN03076 1143 VTIGCSEN-LSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---NNV 1218 (1780)
T ss_pred HHhcCCcc-hhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---hhh
Confidence 33333445 6788888888888775221 21111223345677777665 5678999999999999873321 122
Q ss_pred HHhCChHHHHHHHc---chhhhhHHHHHHHHHHHhhcCC-C---CCChhhhhhHHHHHHHHhccC-ChhHHHHHHHHHHH
Q 043116 152 LSQGALIPLLAELN---EHAKLSMLRTATWTLSNFCRGK-P---QPPFNQIRPALRVLAQLIRSN-DEKVLTDACRALAY 223 (482)
Q Consensus 152 ~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~L~~~~-~---~~~~~~~~~~~~~L~~ll~~~-~~~~~~~~l~~L~~ 223 (482)
.+ +.+.++.++. ...++.+...+..++..++.+. + ......+..++.++..+.... +.++--.++..|++
T Consensus 1219 -kS-GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~ 1296 (1780)
T PLN03076 1219 -KS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRF 1296 (1780)
T ss_pred -hc-CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHH
Confidence 23 5666666663 2345677777888887777653 2 112345567777777776544 46666666666665
Q ss_pred hcc----CCc-----------------------HHHH-----HHHHhCcHHH---HHHhhCCCChhhHHHHHHHHhHhhc
Q 043116 224 LAD----GTN-----------------------DKIQ-----AVIEAGVCPR---LVKLLGHRSRLVLTAALRTIGNIVT 268 (482)
Q Consensus 224 l~~----~~~-----------------------~~~~-----~~~~~~~l~~---L~~ll~~~~~~v~~~a~~~L~~l~~ 268 (482)
++. ... .... .......++. |..+..++.++||..|+.+|-.+..
T Consensus 1297 ~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~ 1376 (1780)
T PLN03076 1297 CATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLR 1376 (1780)
T ss_pred HHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 421 000 0000 0001123333 3344567788999999998887764
Q ss_pred CC-----hhhHHHHHhcCchHHHHHHhcCC-----------------Cc--------hhHHHHHHHHHHHHhcCCHHHHH
Q 043116 269 GD-----DFQTQCIINCGALRYLLGLLIHN-----------------HN--------KSIKKEVCWIISNITAGNREQIQ 318 (482)
Q Consensus 269 ~~-----~~~~~~l~~~~~i~~L~~ll~~~-----------------~~--------~~v~~~a~~~L~nl~~~~~~~~~ 318 (482)
.. ++.-..+++ +++-++...+++. .+ ......|...+.++....-+.+.
T Consensus 1377 ~yG~~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~ 1455 (1780)
T PLN03076 1377 NHGHLFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVN 1455 (1780)
T ss_pred HhhccCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 122233333 4555555555321 00 12222333344444332223333
Q ss_pred HHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcC
Q 043116 319 AVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSG 354 (482)
Q Consensus 319 ~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~ 354 (482)
.+++ +++..|...+..++..+......+|.+++..
T Consensus 1456 ~~L~-~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ 1490 (1780)
T PLN03076 1456 PLLK-KVLMLLVSFIKRPHQSLAGIGIAAFVRLMSN 1490 (1780)
T ss_pred HHHH-HHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 3333 4555555555677888888888888888653
No 219
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.51 E-value=0.13 Score=35.44 Aligned_cols=67 Identities=19% Similarity=0.279 Sum_probs=52.1
Q ss_pred HHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 043116 256 LTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAG 324 (482)
Q Consensus 256 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 324 (482)
.+.|+|++++++. .+.-...+.+.++++.++++.++.+...+|-.+.++|+-++. +.+..+.+.+.|
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence 5679999999987 444456566789999999999988788999999999999976 345455544444
No 220
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.37 E-value=4.1 Score=42.29 Aligned_cols=174 Identities=20% Similarity=0.265 Sum_probs=110.0
Q ss_pred HHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCC--HHHHHHHHHcCChHHHHHHHhc-CCh
Q 043116 262 TIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGN--REQIQAVIDAGLIGPIVNLLQD-AEF 338 (482)
Q Consensus 262 ~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~~~~i~~L~~ll~~-~~~ 338 (482)
+|+++...++..++.+++.++...+.+.++.-....++..+...+.|++... .+......... +..+..++.. .+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~-~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFID-FSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHH-HHHHHHHHhhcchh
Confidence 7788888899999999999999999999997667789999999999998732 12111111111 1222223333 334
Q ss_pred hHHHHHHHHHHHhhcCCCH----HH----HHHHHH--------------cCChHH-HHhcCC-CCCHHHHHHHHHHHHHH
Q 043116 339 GTKKEAAWVISNATSGGTH----EQ----IKHLVR--------------EGCVKP-LCDLLP-CPDPQIVTVCLIGLENI 394 (482)
Q Consensus 339 ~~~~~a~~aL~~l~~~~~~----~~----~~~l~~--------------~~~l~~-L~~ll~-~~~~~v~~~~l~~L~~l 394 (482)
+.-..|+..|..+..+++. .. ...+.+ ...+.. +..++. +..+.....|++++.++
T Consensus 573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~ 652 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV 652 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence 6777788888888775321 00 011111 112223 444443 34445677888888888
Q ss_pred HHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcC-CCHHHHHHHHHHHHHh
Q 043116 395 LKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSH-DNNDIHEMSVKILETY 448 (482)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~-~~~~v~~~a~~~l~~~ 448 (482)
+..... +++.+.+.+++..+.++-.. ...++...+..+++.+
T Consensus 653 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 695 (699)
T KOG3665|consen 653 LEQNKE------------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC 695 (699)
T ss_pred HHcChh------------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence 864333 57777888999988888432 2566666666666554
No 221
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.22 E-value=2.4 Score=41.20 Aligned_cols=159 Identities=13% Similarity=0.110 Sum_probs=114.3
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCC---hHHHHHHHHHHHHHhCCChH
Q 043116 28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDY---PQLQFEAARALTNIASGTSE 104 (482)
Q Consensus 28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~---~~v~~~a~~~L~~l~~~~~~ 104 (482)
....+.+.+.++++..+..++..|..++.. .....+++...++..|.+++.+++. .++...+++++..+..+.-
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d--~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv- 160 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLD--PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV- 160 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhcccc--HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-
Confidence 457788889999999999999999988776 5668899999999999999988762 3555666666666554322
Q ss_pred hHHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHH
Q 043116 105 NTKVAIDHGAVPIFVKLLA--SPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSN 182 (482)
Q Consensus 105 ~~~~~~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 182 (482)
.....+...++.....+.. ..+..+-..|+..|-++...++..++.+.+.--+..++.++ +..+..++..|...+..
T Consensus 161 vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~na 239 (713)
T KOG2999|consen 161 VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNA 239 (713)
T ss_pred eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHH
Confidence 1111122223333333332 23455667888899988877777788888888899999999 77778888888888888
Q ss_pred hhcCCCCC
Q 043116 183 FCRGKPQP 190 (482)
Q Consensus 183 L~~~~~~~ 190 (482)
+....+..
T Consensus 240 l~~~a~~~ 247 (713)
T KOG2999|consen 240 LFRKAPDD 247 (713)
T ss_pred HHhhCChH
Confidence 88776443
No 222
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=95.19 E-value=1 Score=42.87 Aligned_cols=229 Identities=13% Similarity=0.095 Sum_probs=133.3
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHhCCCh---HhHHHHHhCCChHHHHHhhCC-------CCHHHHHHHHHHHHHhhCCC
Q 043116 75 FVEFLMREDYPQLQFEAARALTNIASGTS---ENTKVAIDHGAVPIFVKLLAS-------PSDDVREQAVWALGNVAGDS 144 (482)
Q Consensus 75 L~~ll~~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~g~i~~L~~ll~~-------~~~~~~~~a~~~L~~l~~~~ 144 (482)
+..+++..+ .+-|..|+-.....+...+ .+++.+.+.-+.+.+-+++.+ ++.-.+..++..|..+|+..
T Consensus 16 ~~~L~~~k~-D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 16 CLKLLKGKR-DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred HHHHhcccC-hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 456666666 6788889988898887432 345668888788888888875 23456677888899898654
Q ss_pred hh--hHHHHHHhCChHHHHHHHcchhhhh------HHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHH
Q 043116 145 SR--CRDFVLSQGALIPLLAELNEHAKLS------MLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTD 216 (482)
Q Consensus 145 ~~--~~~~~~~~~~i~~l~~~l~~~~~~~------~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~ 216 (482)
+- ..+.+ +.||.++..+....|++ +...+..+|..++...+.....+..|.++.+.++-.-++...-..
T Consensus 95 ElAsh~~~v---~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~a 171 (698)
T KOG2611|consen 95 ELASHEEMV---SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMA 171 (698)
T ss_pred hhccCHHHH---HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHH
Confidence 32 22232 25889999986655554 788899999999988777777777899999998866444322221
Q ss_pred -HHHHHHHhc----cCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChh------hHHHHHhcCchHH
Q 043116 217 -ACRALAYLA----DGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDF------QTQCIINCGALRY 285 (482)
Q Consensus 217 -~l~~L~~l~----~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~------~~~~l~~~~~i~~ 285 (482)
++..+.-.. ..+. ....+.. ++..+..-+...+...+-+.|+.|..+....+. ......-.....-
T Consensus 172 lal~Vlll~~~~~~cw~e-~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G 248 (698)
T KOG2611|consen 172 LALKVLLLLVSKLDCWSE-TIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTG 248 (698)
T ss_pred HHHHHHHHHHHhcccCcC-CHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHH
Confidence 222221111 1111 1111111 133333333334556777788888865543221 1111111122233
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHh
Q 043116 286 LLGLLIHNHNKSIKKEVCWIISNIT 310 (482)
Q Consensus 286 L~~ll~~~~~~~v~~~a~~~L~nl~ 310 (482)
+..+|++.-.+.-|.-|.....|+.
T Consensus 249 ~~~IL~~kv~p~qr~pAL~Laa~~~ 273 (698)
T KOG2611|consen 249 VVAILQNKVAPSQRLPALILAANMM 273 (698)
T ss_pred HHHHHhcccCchhcChHHHHHHHHH
Confidence 4555555434444555555555554
No 223
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=95.11 E-value=0.54 Score=44.53 Aligned_cols=210 Identities=14% Similarity=0.119 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHH
Q 043116 86 QLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLAS-----PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPL 160 (482)
Q Consensus 86 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l 160 (482)
.++..++..+...+....+.-..++. ..+.....+|.+ ....+...|+..|..++.. +..+..+...+.+..+
T Consensus 111 kvK~~i~~~~~ly~~kY~e~f~~~l~-~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~-~~~~~lf~~~~~L~~I 188 (370)
T PF08506_consen 111 KVKAWICENLNLYAEKYEEEFEPFLP-TFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAES-PHHKNLFENKPHLQQI 188 (370)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTS-HHHHTTT-SHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcc-hhHHHHhCCHHHHHHH
Confidence 35555666666665533333333332 345555566643 2355667788888887743 2222111111122222
Q ss_pred HHHH---------------cc------------hhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc------
Q 043116 161 LAEL---------------NE------------HAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR------ 207 (482)
Q Consensus 161 ~~~l---------------~~------------~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~------ 207 (482)
+..+ .+ .....-++.|+..+..|+...+... ..-+...+..++.
T Consensus 189 ie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v---~~i~~~~i~~~l~~y~~~~ 265 (370)
T PF08506_consen 189 IEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQV---TSILMQYIQQLLQQYASNP 265 (370)
T ss_dssp HHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-T
T ss_pred HHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHhhCC
Confidence 2211 00 1112445668888888886532111 1122223333443
Q ss_pred cCChhHHHHHHHHHHHhccCCcH------------HHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHH
Q 043116 208 SNDEKVLTDACRALAYLADGTND------------KIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQ 275 (482)
Q Consensus 208 ~~~~~~~~~~l~~L~~l~~~~~~------------~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 275 (482)
+.++.-...|+..++.++..... ....++...+++-|. --.+..|-++..|++.+..+-..-+. .
T Consensus 266 ~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~--~ 342 (370)
T PF08506_consen 266 SNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK--E 342 (370)
T ss_dssp TT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H--H
T ss_pred cccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH--H
Confidence 34677788899988888854321 123344444445444 11234567889999999887764332 2
Q ss_pred HHHhcCchHHHHHHhcCCCchhHHHHHHHHH
Q 043116 276 CIINCGALRYLLGLLIHNHNKSIKKEVCWII 306 (482)
Q Consensus 276 ~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L 306 (482)
.+ .++++.++..|.++ +.-|+..|+.++
T Consensus 343 ~l--~~~~~~l~~~L~~~-~~vv~tyAA~~i 370 (370)
T PF08506_consen 343 QL--LQIFPLLVNHLQSS-SYVVHTYAAIAI 370 (370)
T ss_dssp HH--HHHHHHHHHHTTSS--HHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHhCCC-CcchhhhhhhhC
Confidence 22 25899999999999 888999998875
No 224
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.09 E-value=3.7 Score=40.40 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=79.2
Q ss_pred hhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCh
Q 043116 192 FNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDD 271 (482)
Q Consensus 192 ~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 271 (482)
.....+.+..++..+.+++..++..++..|+.+...-.+. ....-.+.+..+.+-+-+..+.||..|+.+|..+-....
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 4455777777888888999999999999999888554432 334445788888888888999999999999998865332
Q ss_pred hhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHH
Q 043116 272 FQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWII 306 (482)
Q Consensus 272 ~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L 306 (482)
.... .+...+..+++..++.+||..|..-+
T Consensus 165 neen-----~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 165 NEEN-----RIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred ChHH-----HHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 2111 23345777787777889998865433
No 225
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.08 E-value=0.93 Score=37.94 Aligned_cols=142 Identities=18% Similarity=0.175 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHhCC-ChHhH----HHHHhCC------Ch-HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHh
Q 043116 87 LQFEAARALTNIASG-TSENT----KVAIDHG------AV-PIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQ 154 (482)
Q Consensus 87 v~~~a~~~L~~l~~~-~~~~~----~~~~~~g------~i-~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 154 (482)
+|..|+.+|..++.. ++..- ..++..+ .- +.+.-++.++++.+|..|+.++..+..+...+-...-+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 677788888888774 21110 1122222 22 344446778999999999999999986543221111111
Q ss_pred -------------------CChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCC--hhhhhhHHHHHHHHhccCChhH
Q 043116 155 -------------------GALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPP--FNQIRPALRVLAQLIRSNDEKV 213 (482)
Q Consensus 155 -------------------~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~--~~~~~~~~~~L~~ll~~~~~~~ 213 (482)
..-..|+..+....+..+....+.++..+....|... ......++..+..++.+.|+++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1233455555555577788899999999999876443 3445677777888888999999
Q ss_pred HHHHHHHHHHhccCC
Q 043116 214 LTDACRALAYLADGT 228 (482)
Q Consensus 214 ~~~~l~~L~~l~~~~ 228 (482)
+..++.+++.+....
T Consensus 162 ~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 162 RVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999998887543
No 226
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=94.96 E-value=1.3 Score=44.37 Aligned_cols=256 Identities=13% Similarity=0.104 Sum_probs=159.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHhCCChHhHHHH
Q 043116 31 TMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMRED-YPQLQFEAARALTNIASGTSENTKVA 109 (482)
Q Consensus 31 ~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~ 109 (482)
.++..++-.+...+..-...|.+.... ..+.++...++|.|+..+...+ ..++..-.+.+ +.... .++
T Consensus 258 ~fLeel~lks~~eK~~Ff~~L~~~l~~----~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~-~k~ld-~~e----- 326 (690)
T KOG1243|consen 258 LFLEELRLKSVEEKQKFFSGLIDRLDN----FPEEIIASKVLPILLAALEFGDAASDFLTPLFKL-GKDLD-EEE----- 326 (690)
T ss_pred HHHHhcccCcHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHhhccccchhhhhHHHHh-hhhcc-ccc-----
Confidence 344444555555554444444442222 1344555666777776665554 12333222222 22222 122
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCC
Q 043116 110 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQ 189 (482)
Q Consensus 110 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~ 189 (482)
++.++++.|++++...|..+|-.-+.-+-++... ..+.+.+..+++.+..-+ .+++..++...+.++..|+..-..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhch
Confidence 5667899999999999999998777666666533 334455666888888888 778888999988888888764311
Q ss_pred CChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCc-HHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 043116 190 PPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGV-CPRLVKLLGHRSRLVLTAALRTIGNIVT 268 (482)
Q Consensus 190 ~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~-l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 268 (482)
. ......+..+..+-.+.+..++....-|++.++.+..... ..++ ...+.+-+.++-..-|..+...+.....
T Consensus 403 ~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 403 R--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALKDPFVPARKAGVLALAATQE 476 (690)
T ss_pred h--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence 1 2224566666666666778899999999999887644322 2333 3344455677777778888777765544
Q ss_pred CChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 043116 269 GDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA 311 (482)
Q Consensus 269 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 311 (482)
..+.. -+...+++.+..+.-+. +..+|..|-.++..+-.
T Consensus 477 ~~~~~---~va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 477 YFDQS---EVANKILPSLVPLTVDP-EKTVRDTAEKAIRQFLE 515 (690)
T ss_pred ccchh---hhhhhccccccccccCc-ccchhhHHHHHHHHHHh
Confidence 32221 23346788888888888 88888888877766644
No 227
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.78 E-value=0.61 Score=39.01 Aligned_cols=144 Identities=15% Similarity=0.149 Sum_probs=92.2
Q ss_pred hhHHHHHHHHhHhhcCChh-----hHHHHHh------cCchHHHH-HHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 043116 254 LVLTAALRTIGNIVTGDDF-----QTQCIIN------CGALRYLL-GLLIHNHNKSIKKEVCWIISNITAGNREQIQAVI 321 (482)
Q Consensus 254 ~v~~~a~~~L~~l~~~~~~-----~~~~l~~------~~~i~~L~-~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 321 (482)
++|..|+.+|..++...+. .-..++- .+.-+.|+ -++.++ ++++|..|+.++..+..+........-
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp-~~kvR~aA~~~l~~lL~gsk~~L~~Ae 79 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDP-SPKVRAAAASALAALLEGSKPFLAQAE 79 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCC-chhHHHHHHHHHHHHHHccHHHHHHHH
Confidence 3678888888888875221 1111221 12333444 444555 999999999999999887655544333
Q ss_pred HcC-------------------ChHHHHHHHh-cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCH
Q 043116 322 DAG-------------------LIGPIVNLLQ-DAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDP 381 (482)
Q Consensus 322 ~~~-------------------~i~~L~~ll~-~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~ 381 (482)
+.+ +...|+..++ +.+..+....+.++..++.....++.+.=.-..++..+..++.+.|+
T Consensus 80 ~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~ 159 (182)
T PF13251_consen 80 ESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDP 159 (182)
T ss_pred hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCC
Confidence 211 2233334444 34677888899999999987666554332222345566667778999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 043116 382 QIVTVCLIGLENILKVG 398 (482)
Q Consensus 382 ~v~~~~l~~L~~l~~~~ 398 (482)
+++..++.+++.++...
T Consensus 160 ~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 160 NVRVAALSCLGALLSVQ 176 (182)
T ss_pred cHHHHHHHHHHHHHcCC
Confidence 99999999999887543
No 228
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.60 E-value=0.18 Score=36.81 Aligned_cols=83 Identities=8% Similarity=0.055 Sum_probs=63.1
Q ss_pred HHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 043116 241 CPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAV 320 (482)
Q Consensus 241 l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 320 (482)
+...+..+.++.+.+|..++..|..+..... ....-..+++..+...++++ ++.|--.|..+++.++...++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~----- 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPD----- 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChH-----
Confidence 4567778889999999999999999998665 11122246788888999999 999999999999999875555
Q ss_pred HHcCChHHHHHHHh
Q 043116 321 IDAGLIGPIVNLLQ 334 (482)
Q Consensus 321 ~~~~~i~~L~~ll~ 334 (482)
.+++.|++...
T Consensus 77 ---~vl~~L~~~y~ 87 (92)
T PF10363_consen 77 ---EVLPILLDEYA 87 (92)
T ss_pred ---HHHHHHHHHHh
Confidence 24555555544
No 229
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=94.60 E-value=4.4 Score=38.70 Aligned_cols=266 Identities=12% Similarity=0.040 Sum_probs=134.1
Q ss_pred CHHHHHHHHHHHHHhhCCChhhHHHHHHhC---ChHHHHHHHcc-hhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHH
Q 043116 126 SDDVREQAVWALGNVAGDSSRCRDFVLSQG---ALIPLLAELNE-HAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRV 201 (482)
Q Consensus 126 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~---~i~~l~~~l~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~ 201 (482)
+.++..+|+.+++.+..+. .....+.+.. ++...+..+.. +.+..+....+|+|+.--.............++..
T Consensus 59 ~~~L~~qALkll~~~l~~~-~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~ 137 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHP-EIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA 137 (372)
T ss_pred chHHHHHHHHHHHHHHccH-HHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence 6788889999999988443 3222222111 23344444422 33445666677777653333221122222333333
Q ss_pred HHHHhc-cCChhHHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC---hhhHHH
Q 043116 202 LAQLIR-SNDEKVLTDACRALAYLADGTNDKIQAVIEA-GVCPRLVKLLGHRSRLVLTAALRTIGNIVTGD---DFQTQC 276 (482)
Q Consensus 202 L~~ll~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~---~~~~~~ 276 (482)
+..+-+ -+...+....+.++.++....+.... ... ..++.++..+-+....++..|..++..+...- ....+.
T Consensus 138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~--~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~ 215 (372)
T PF12231_consen 138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMI--KHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKS 215 (372)
T ss_pred HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence 333333 45677888899999999876654322 222 36778888777777777777665555444221 111111
Q ss_pred ---HHhc----C-----chHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHH-HHHHHHcCChHHHHHHHhcCChhHHHH
Q 043116 277 ---IINC----G-----ALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQ-IQAVIDAGLIGPIVNLLQDAEFGTKKE 343 (482)
Q Consensus 277 ---l~~~----~-----~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~-~~~l~~~~~i~~L~~ll~~~~~~~~~~ 343 (482)
..+. + +.+.|..++.+. +.....--.|...-...+++.. ....+ +..+...-..+.++++.+|..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~~~~w~~~-n~wL~v~e~cFn~~d~~~k~~ 293 (372)
T PF12231_consen 216 VLEDLQRSLENGKLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSRLDSWEHL-NEWLKVPEKCFNSSDPQVKIQ 293 (372)
T ss_pred HHHHhccccccccHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCchhhccHhH-hHHHHHHHHHhcCCCHHHHHH
Confidence 1221 2 334466666664 2223233344443333332210 00111 123333334455789999999
Q ss_pred HHHHHHHhhcCC--CHHHHHHHHHcCChHHHHhcCC-CCCH----HHHHHHHHHHHHHHHh
Q 043116 344 AAWVISNATSGG--THEQIKHLVREGCVKPLCDLLP-CPDP----QIVTVCLIGLENILKV 397 (482)
Q Consensus 344 a~~aL~~l~~~~--~~~~~~~l~~~~~l~~L~~ll~-~~~~----~v~~~~l~~L~~l~~~ 397 (482)
|..+...+.... +.......... ...++...++ .... ++...++..+.+++.+
T Consensus 294 A~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~ 353 (372)
T PF12231_consen 294 AFKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY 353 (372)
T ss_pred HHHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence 998888776521 11111222221 1222233333 2222 5677777777777643
No 230
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.55 E-value=0.46 Score=39.32 Aligned_cols=112 Identities=18% Similarity=0.210 Sum_probs=80.2
Q ss_pred CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHh--cCchHHHHHHhcCCCchhHHHHHHHHHHHHhc---CC
Q 043116 239 GVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIIN--CGALRYLLGLLIHNHNKSIKKEVCWIISNITA---GN 313 (482)
Q Consensus 239 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~--~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~---~~ 313 (482)
....++..+++++++.-|..++..+...+..++. +.+.+ ...+..++.+++.++.+.+++.++.++..+.. +.
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4567788999999999999999999888876532 22222 24788899999998778889999999998875 55
Q ss_pred HHHHHHHHHc---CChHHHHHHHhcCChhHHHHHHHHHHHhhcC
Q 043116 314 REQIQAVIDA---GLIGPIVNLLQDAEFGTKKEAAWVISNATSG 354 (482)
Q Consensus 314 ~~~~~~l~~~---~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~ 354 (482)
++..+++.-. ++++.++.+++. ......++.+|..+...
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 6655555432 245555555553 56677788888887664
No 231
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.53 E-value=2.1 Score=41.61 Aligned_cols=168 Identities=10% Similarity=0.089 Sum_probs=116.7
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCC----hhhHHHHHHHHhHhhcCCh
Q 043116 196 RPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRS----RLVLTAALRTIGNIVTGDD 271 (482)
Q Consensus 196 ~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~----~~v~~~a~~~L~~l~~~~~ 271 (482)
......+...+.++++..+..++..+..++.. ......++....+..|.+++.++. ..+...++.++..+..+.-
T Consensus 82 ~~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv 160 (713)
T KOG2999|consen 82 SHYAKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV 160 (713)
T ss_pred hHHHHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce
Confidence 34556677888888888888888888888854 456677888888899999987754 3566667777766665332
Q ss_pred hhHHHHHhcCchHHHHHHhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHH
Q 043116 272 FQTQCIINCGALRYLLGLLIHN-HNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISN 350 (482)
Q Consensus 272 ~~~~~l~~~~~i~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~ 350 (482)
.........++..+..+..-. .+..+-..|...+-++..+++...+.+.+.--+..|+..++..+..++..|+..+..
T Consensus 161 -vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~na 239 (713)
T KOG2999|consen 161 -VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNA 239 (713)
T ss_pred -eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 111112223333333333221 155677788888888888877767777777789999999999999999998888888
Q ss_pred hhcCCCHHHHHHHHH
Q 043116 351 ATSGGTHEQIKHLVR 365 (482)
Q Consensus 351 l~~~~~~~~~~~l~~ 365 (482)
+...+.+..++.+.+
T Consensus 240 l~~~a~~~~R~~~~~ 254 (713)
T KOG2999|consen 240 LFRKAPDDKRFEMAK 254 (713)
T ss_pred HHhhCChHHHHHHHH
Confidence 887766665554443
No 232
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=94.52 E-value=3.2 Score=39.38 Aligned_cols=92 Identities=21% Similarity=0.243 Sum_probs=60.5
Q ss_pred hHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC-CCCCh
Q 043116 115 VPIFVKLLA-SPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK-PQPPF 192 (482)
Q Consensus 115 i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~-~~~~~ 192 (482)
+..+++-+. +.+..+|..++--|+.-+. ++.++..+...|....++..+.+..+......++.++..+...+ +....
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 455555555 4556788888888888884 56788999999999999999965555545555555555554443 33333
Q ss_pred hhhhhHHHHHHHHhc
Q 043116 193 NQIRPALRVLAQLIR 207 (482)
Q Consensus 193 ~~~~~~~~~L~~ll~ 207 (482)
.........+..++.
T Consensus 102 ~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLK 116 (361)
T ss_pred hhchhHHHHHHHHhc
Confidence 223455555566666
No 233
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=94.50 E-value=0.99 Score=47.02 Aligned_cols=186 Identities=15% Similarity=0.091 Sum_probs=127.0
Q ss_pred HHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh-hCCCChhhHHHHHHHHhHhhcCChhhHHHHHhc
Q 043116 202 LAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKL-LGHRSRLVLTAALRTIGNIVTGDDFQTQCIINC 280 (482)
Q Consensus 202 L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~ 280 (482)
+-.-+.+.++.-+..++..+........ ........+.+..++.. +.+.+..+...++.+|..++......... +..
T Consensus 258 l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~-~~~ 335 (815)
T KOG1820|consen 258 LETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK-YAK 335 (815)
T ss_pred HHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH-HHH
Confidence 4444557788888889888887775443 10001111333344433 35667788889999999998765544332 223
Q ss_pred CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHH
Q 043116 281 GALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQI 360 (482)
Q Consensus 281 ~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~ 360 (482)
+..+.+++-+... .+.++..+..++-.++...+. ...++.++..+.+.++..+..+...+.......++...
T Consensus 336 ~v~p~lld~lkek-k~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 336 NVFPSLLDRLKEK-KSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred hhcchHHHHhhhc-cHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 6788888888887 777887777776666542221 13677788889999999999988888877765442222
Q ss_pred HHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHh
Q 043116 361 KHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKV 397 (482)
Q Consensus 361 ~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~ 397 (482)
..-.-.++++.++....+.+.+|+..++.++..+++.
T Consensus 408 ~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred chhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 2222346788899999999999999999999998865
No 234
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.48 E-value=0.64 Score=39.35 Aligned_cols=114 Identities=14% Similarity=0.116 Sum_probs=76.1
Q ss_pred hCCCChhhHHHHHHHHhHhhcCChhhHHHHHh----------------cCchHHHHHHhcCCC-----chhHHHHHHHHH
Q 043116 248 LGHRSRLVLTAALRTIGNIVTGDDFQTQCIIN----------------CGALRYLLGLLIHNH-----NKSIKKEVCWII 306 (482)
Q Consensus 248 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~----------------~~~i~~L~~ll~~~~-----~~~v~~~a~~~L 306 (482)
+.+++......++.+|+|++...... ..+++ ...+..|+..+..+. ...--...+.++
T Consensus 4 i~~~~~~~adl~~MLLsNlT~~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl 82 (192)
T PF04063_consen 4 ITDPKSPLADLACMLLSNLTRSDSGC-EKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVL 82 (192)
T ss_pred ecCCCcchHHHHHHHHHHhccchHHH-HHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHH
Confidence 34455567777888888888744332 22221 235666776665511 334456788999
Q ss_pred HHHhcCCHHHHHHHHH--cCC--hHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 043116 307 SNITAGNREQIQAVID--AGL--IGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVR 365 (482)
Q Consensus 307 ~nl~~~~~~~~~~l~~--~~~--i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~ 365 (482)
+|++. .++.++.+++ .+. +..|+..+.+.+..-|.-++.+|.|++.. .+...++..
T Consensus 83 ~NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd--~~~H~~LL~ 142 (192)
T PF04063_consen 83 ANLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD--TDSHEWLLS 142 (192)
T ss_pred HHhcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc--HhHHHHhcC
Confidence 99986 4777788875 334 77888888888777788899999999984 444455554
No 235
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.41 E-value=0.36 Score=43.18 Aligned_cols=144 Identities=10% Similarity=0.159 Sum_probs=100.6
Q ss_pred HHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 043116 241 CPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAV 320 (482)
Q Consensus 241 l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 320 (482)
+...+..|.+.++......+..|..++..+++.....+. .++-.+++-+++. ...|-+.||.+++.+...-.+.+...
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~~ 167 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQE 167 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788899999999999999998877654443332 4666777888888 88899999999999987433333332
Q ss_pred HHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 043116 321 IDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENIL 395 (482)
Q Consensus 321 ~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~ 395 (482)
.+ +.+-.|..--..++.-++..|-.+|..++.+..|.. +++.|...+.+.++.++..+..++.+..
T Consensus 168 ld-~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~--------~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 168 LD-DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK--------LLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HH-HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH--------HHHHHHHHHhhhchhhhhhhhccccccc
Confidence 22 222222222223456688999999999998766543 5777888888999988887776655544
No 236
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=94.40 E-value=3.7 Score=37.05 Aligned_cols=209 Identities=12% Similarity=0.082 Sum_probs=141.8
Q ss_pred HHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCh----hhHHHHH-hcCchHHHHHHhcCCCc-hhHHHHHHHHH
Q 043116 233 QAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDD----FQTQCII-NCGALRYLLGLLIHNHN-KSIKKEVCWII 306 (482)
Q Consensus 233 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~----~~~~~l~-~~~~i~~L~~ll~~~~~-~~v~~~a~~~L 306 (482)
+.+.+.|.+..++..+...+-+-+..++.+..++-...- ....++. +..++..++.- -++ +++.-.+...+
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~---~~~~~~iaL~cg~ml 149 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG---YENTPEIALTCGNML 149 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh---hccchHHHHHHHHHH
Confidence 457778999999999998888888889988888876432 2222222 22344444444 212 44444444455
Q ss_pred HHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCC----hHHHHhcCCCCCHH
Q 043116 307 SNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGC----VKPLCDLLPCPDPQ 382 (482)
Q Consensus 307 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~----l~~L~~ll~~~~~~ 382 (482)
..+.++ +...+.++...-+.....+++.+..++...|......+.... ......+...+. .+....++.+++.-
T Consensus 150 rEcirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~H-k~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyv 227 (342)
T KOG1566|consen 150 RECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRH-KSVVAEFLIRNYDNFFAEVYEKLLRSENYV 227 (342)
T ss_pred HHHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHh-HHHHHHHHHhChhhhHHHHHHHHhccccee
Confidence 555443 444556667788889999999999999999999998888754 333333344333 33366688899988
Q ss_pred HHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 043116 383 IVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGRVVG 455 (482)
Q Consensus 383 v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 455 (482)
++..+++.+..++-...+... ....+..-.-+..+-.++.+++..+|-.|-.+..-+.-....+
T Consensus 228 tkrqs~kllg~llldr~N~~~---------M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~ 291 (342)
T KOG1566|consen 228 TKRQSLKLLGELLLDRSNSAV---------MTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKP 291 (342)
T ss_pred hHHHHHHhHHHHHhCCCcHHH---------HHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCC
Confidence 999999999999876555432 2333444455778888899999999999988887666655543
No 237
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.31 E-value=3.9 Score=41.25 Aligned_cols=159 Identities=13% Similarity=0.116 Sum_probs=102.0
Q ss_pred hhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcCC
Q 043116 192 FNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLL-GHRSRLVLTAALRTIGNIVTGD 270 (482)
Q Consensus 192 ~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~ 270 (482)
....+.++|.|...+.+.+..++..++..+..+++.-+. ..+...+++.+..+- .+.+..++..++-|++.++..-
T Consensus 384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l 460 (700)
T KOG2137|consen 384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL 460 (700)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH
Confidence 344578889888889999999999999999998865442 245556777777653 5567889999999999988321
Q ss_pred hhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHH--HHHHH
Q 043116 271 DFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKE--AAWVI 348 (482)
Q Consensus 271 ~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~--a~~aL 348 (482)
+.. .++ ..+..+.+..+.. ++.+......+..++....+.. ..++-..++|.++.+...+.-...+. .+..+
T Consensus 461 D~~--~v~--d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L~~~Qy~~~m~~i 534 (700)
T KOG2137|consen 461 DKA--AVL--DELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSLNGEQYNKYMSEI 534 (700)
T ss_pred HHH--HhH--HHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccccHHHHHHHHHHH
Confidence 111 111 2344555556666 8888887777777777633332 34444568888888777554332222 33344
Q ss_pred HHhhcCCCHHH
Q 043116 349 SNATSGGTHEQ 359 (482)
Q Consensus 349 ~~l~~~~~~~~ 359 (482)
..+...-++.+
T Consensus 535 ~~ml~~ie~~~ 545 (700)
T KOG2137|consen 535 RLMLSAIEKPR 545 (700)
T ss_pred HHHHhhhhHHH
Confidence 44444333333
No 238
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.13 E-value=0.54 Score=39.77 Aligned_cols=123 Identities=13% Similarity=0.111 Sum_probs=78.0
Q ss_pred cCChhHHHHHHHHHHHhccCCcHHHHHHHH----------------hCcHHHHHHhhCC------CChhhHHHHHHHHhH
Q 043116 208 SNDEKVLTDACRALAYLADGTNDKIQAVIE----------------AGVCPRLVKLLGH------RSRLVLTAALRTIGN 265 (482)
Q Consensus 208 ~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~----------------~~~l~~L~~ll~~------~~~~v~~~a~~~L~~ 265 (482)
.++......++..|+|++..+... ..+++ ...+..|+..+.. ....-....+.++.|
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGC-EKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHH-HHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 344455666777777877654322 21222 2356667766644 223456667889999
Q ss_pred hhcCChhhHHHHHhc--Cc--hHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---cCChHHHHHHHh
Q 043116 266 IVTGDDFQTQCIINC--GA--LRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVID---AGLIGPIVNLLQ 334 (482)
Q Consensus 266 l~~~~~~~~~~l~~~--~~--i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~ 334 (482)
++. .+..++.+.+. +. +..|+.++++. +..-|..++.+|.|+|.....+ ..++. -+++|.|+--+.
T Consensus 85 lS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 85 LSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred hcC-CHHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhcc
Confidence 987 55556666654 34 78888899988 8888889999999999865443 44443 244555444443
No 239
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.04 E-value=1.2 Score=43.62 Aligned_cols=99 Identities=15% Similarity=0.197 Sum_probs=73.4
Q ss_pred CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc--CCHHH
Q 043116 239 GVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA--GNREQ 316 (482)
Q Consensus 239 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~ 316 (482)
|++..++..+.+++..||..++.+|+.++..-.+. ...+-.+++..|.+-+-+. .+.||.+|+.+|+.+-. ++++.
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~~DR-E~~VR~eAv~~L~~~Qe~~~neen 168 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERLFDR-EKAVRREAVKVLCYYQEMELNEEN 168 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhccCChHH
Confidence 67788888888999999999999999988754443 3344457888888888777 88899999999999865 33332
Q ss_pred HHHHHHcCChHHHHHHHh-cCChhHHHHHHH
Q 043116 317 IQAVIDAGLIGPIVNLLQ-DAEFGTKKEAAW 346 (482)
Q Consensus 317 ~~~l~~~~~i~~L~~ll~-~~~~~~~~~a~~ 346 (482)
.+...|..+++ +++.++|..|+.
T Consensus 169 -------~~~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 169 -------RIVNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred -------HHHHHHHHHHhcCcHHHHHHHHHH
Confidence 23445666666 466788876554
No 240
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.01 E-value=0.98 Score=45.09 Aligned_cols=158 Identities=15% Similarity=0.125 Sum_probs=104.5
Q ss_pred HHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhC-CCh----HhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHH
Q 043116 63 IEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIAS-GTS----ENTKVAIDHGAVPIFVKLLASPSDDVREQAVWAL 137 (482)
Q Consensus 63 ~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~-~~~----~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L 137 (482)
+++++-.=.-|.+.+-|+..+ ..+|..|+..+.+..- .+| +-.+.+++. -...+.++|+++-+.+|..|+..+
T Consensus 167 Veeml~rL~~p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv 244 (1005)
T KOG1949|consen 167 VEEMLYRLYKPILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGV 244 (1005)
T ss_pred HHHHHHHHHhHHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHH
Confidence 444444434566677788888 7999999999999764 222 234445543 357788899999999999998888
Q ss_pred HHhhCCChhh--HHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHH
Q 043116 138 GNVAGDSSRC--RDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLT 215 (482)
Q Consensus 138 ~~l~~~~~~~--~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~ 215 (482)
+.+...-.+. ...+. ..+..++.-+..++..+++......|..+.... ......+.++|.+-..+.++...++.
T Consensus 245 ~k~~s~fWe~iP~~i~~--~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRv 320 (1005)
T KOG1949|consen 245 CKITSKFWEMIPPTILI--DLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRV 320 (1005)
T ss_pred HHHHHHHHHHcCHHHHH--HHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHH
Confidence 7776322111 01111 123344444444455577777777777777663 33445567788888888888899998
Q ss_pred HHHHHHHHhcc
Q 043116 216 DACRALAYLAD 226 (482)
Q Consensus 216 ~~l~~L~~l~~ 226 (482)
.+...|..+-.
T Consensus 321 A~vd~ll~ik~ 331 (1005)
T KOG1949|consen 321 AFVDMLLKIKA 331 (1005)
T ss_pred HHHHHHHHHHh
Confidence 88888776653
No 241
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=93.84 E-value=4.4 Score=35.79 Aligned_cols=201 Identities=22% Similarity=0.207 Sum_probs=118.4
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 043116 72 VPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151 (482)
Q Consensus 72 ~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 151 (482)
++.|+.-+....+++.+...+.+|..++.+...... -++..|..+...+....+..+.+.+..+-..++..-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 455555344444489999999999999985412211 235666667777777776677777777764443221
Q ss_pred HHhCChHHHHHHH---------cchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHh-ccCChhHHHHHHHHH
Q 043116 152 LSQGALIPLLAEL---------NEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLI-RSNDEKVLTDACRAL 221 (482)
Q Consensus 152 ~~~~~i~~l~~~l---------~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~~~~~~l~~L 221 (482)
+.+..++... ..+...+.......++..+|...|. .-..+++.+..++ .+.++.++..++.++
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 2333333331 0111223344456788888888765 4456788888888 788888999999999
Q ss_pred HHhccCCcHHHHHHHH-hCcHHHHHHhhCCC-ChhhHHHHHHHHhHhhcCC-hhhHHHHHhcCchHHHHHHhcCC
Q 043116 222 AYLADGTNDKIQAVIE-AGVCPRLVKLLGHR-SRLVLTAALRTIGNIVTGD-DFQTQCIINCGALRYLLGLLIHN 293 (482)
Q Consensus 222 ~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~i~~L~~ll~~~ 293 (482)
..++... +++ ......+.+-++.+ .+.+....+..+..+.... +...-......++..+.++..+.
T Consensus 147 ~~Lc~~~------vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~ 215 (234)
T PF12530_consen 147 APLCEAE------VVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS 215 (234)
T ss_pred HHHHHHh------hccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence 9999322 111 12334455555443 4555555444444443322 11112234456777788877776
No 242
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=93.79 E-value=1.1 Score=35.58 Aligned_cols=74 Identities=9% Similarity=-0.027 Sum_probs=62.1
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC------CCHHHHHHHHHHHHHHHHhc
Q 043116 325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC------PDPQIVTVCLIGLENILKVG 398 (482)
Q Consensus 325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~~l~~L~~l~~~~ 398 (482)
.+..+..-+.++++.++..|+..|-.++.++...+...+...+++..|+.++.. .++.|+.+++..+.......
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 455667777899999999999999999999888888888888999999998853 46789999999888876543
No 243
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.70 E-value=0.46 Score=34.73 Aligned_cols=73 Identities=10% Similarity=0.043 Sum_probs=58.1
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChh
Q 043116 198 ALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDF 272 (482)
Q Consensus 198 ~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 272 (482)
.+...+..++++.+.+|..++..|+.+....+ ....-..+++..+...++++++-|-.+|+.++..++...+.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 34556667788889999999999999997766 11222346788888999999999999999999999986655
No 244
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=2.2 Score=41.65 Aligned_cols=156 Identities=15% Similarity=0.104 Sum_probs=98.8
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHh-hcCCCChHHHHHHHHHHHHHhCCChHhHHHHHh
Q 043116 33 VAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEF-LMREDYPQLQFEAARALTNIASGTSENTKVAID 111 (482)
Q Consensus 33 ~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~l-l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 111 (482)
-+++.+.++.++...+..+.---.+.+ +.|++..++.. .++.+ .++|+.|+-+|+-+|.+++.
T Consensus 522 ~ell~d~ds~lRy~G~fs~alAy~GTg--------n~~vv~~lLh~avsD~n-DDVrRAAViAlGfvc~~D~~------- 585 (926)
T COG5116 522 NELLYDKDSILRYNGVFSLALAYVGTG--------NLGVVSTLLHYAVSDGN-DDVRRAAVIALGFVCCDDRD------- 585 (926)
T ss_pred HHHhcCchHHhhhccHHHHHHHHhcCC--------cchhHhhhheeecccCc-hHHHHHHHHheeeeEecCcc-------
Confidence 344456667777766655543333321 24577778877 56667 79999999999999885543
Q ss_pred CCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCC
Q 043116 112 HGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQP 190 (482)
Q Consensus 112 ~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~ 190 (482)
.+...+++|. +.++.+|...+.+|+-.|.+.-.. . .+..|-.++ .+...-+++.|+-++..+.......
T Consensus 586 --~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~--~-----a~diL~~L~-~D~~dfVRQ~AmIa~~mIl~Q~n~~ 655 (926)
T COG5116 586 --LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK--V-----ATDILEALM-YDTNDFVRQSAMIAVGMILMQCNPE 655 (926)
T ss_pred --hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH--H-----HHHHHHHHh-hCcHHHHHHHHHHHHHHHHhhcCcc
Confidence 4555566655 678889988888898888544221 1 122333333 5566667777888888777765444
Q ss_pred ChhhhhhHHHHHHHHhccCChhHH
Q 043116 191 PFNQIRPALRVLAQLIRSNDEKVL 214 (482)
Q Consensus 191 ~~~~~~~~~~~L~~ll~~~~~~~~ 214 (482)
-.....++...+.+++.....+-.
T Consensus 656 Lnp~v~~I~k~f~~vI~~Khe~gl 679 (926)
T COG5116 656 LNPNVKRIIKKFNRVIVDKHESGL 679 (926)
T ss_pred cChhHHHHHHHHHHHHhhhhHhHH
Confidence 444556777777777765544433
No 245
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=93.42 E-value=6 Score=38.51 Aligned_cols=274 Identities=11% Similarity=0.097 Sum_probs=130.8
Q ss_pred HHHHHHhhcC---CCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhC----C
Q 043116 72 VPRFVEFLMR---EDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAG----D 143 (482)
Q Consensus 72 ~~~L~~ll~~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~----~ 143 (482)
+..|..++.. .+++.+-...++++..+...-......+++ ..+..+....++ .+|..-.....+++.+.+ .
T Consensus 28 l~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~-~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~ 106 (435)
T PF03378_consen 28 LQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQ-HLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEA 106 (435)
T ss_dssp HHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHH-HHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GG
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCC
Confidence 4445555543 222445555556655554433333344433 234444444454 356666655555555542 2
Q ss_pred ChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCC-CCChhhhhhHHHHHHHHhccCChhHHHHHHHHHH
Q 043116 144 SSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP-QPPFNQIRPALRVLAQLIRSNDEKVLTDACRALA 222 (482)
Q Consensus 144 ~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~ 222 (482)
++... .-.+...+|.+..+| ..+-.+..-++..+++.+....+ .........++|.++.-.-.....-.-...+.|.
T Consensus 107 ~~~~v-~~~E~~L~P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~ 184 (435)
T PF03378_consen 107 DPEAV-SQFEEALFPPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQ 184 (435)
T ss_dssp GHH----HHHHHHHHHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHH
T ss_pred ChhHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHH
Confidence 22211 122444677777777 44445677778888888877654 2222333455555443322222222234444444
Q ss_pred HhccCCcHHHHHHHHh----CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhh-HHHHHhcCchHHHHHHhcCCCchh
Q 043116 223 YLADGTNDKIQAVIEA----GVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQ-TQCIINCGALRYLLGLLIHNHNKS 297 (482)
Q Consensus 223 ~l~~~~~~~~~~~~~~----~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~l~~~~~i~~L~~ll~~~~~~~ 297 (482)
......+... ... +++..+-+++.+...+ ..+...|..+..+-+.. ....+ ..++..+..-|++....+
T Consensus 185 a~i~k~~~~i---~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl-~~I~~lll~RLq~skT~k 258 (435)
T PF03378_consen 185 AYIKKDPSFI---VANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYL-KQIFTLLLTRLQSSKTEK 258 (435)
T ss_dssp HHHHHHGGG-------S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGH-HHHHHHHHHHHHHC--HH
T ss_pred HHHHhCchhh---cchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHhhCCcHH
Confidence 4443333221 212 3445555667665432 44667777777654432 11111 235556666666554666
Q ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHH---cCChHHHHHHH--h---c-CChhHHHHHHHHHHHhhcC
Q 043116 298 IKKEVCWIISNITA-GNREQIQAVID---AGLIGPIVNLL--Q---D-AEFGTKKEAAWVISNATSG 354 (482)
Q Consensus 298 v~~~a~~~L~nl~~-~~~~~~~~l~~---~~~i~~L~~ll--~---~-~~~~~~~~a~~aL~~l~~~ 354 (482)
..+.-+..++.++. .+++..-..++ .|++..++.-+ . . ..+.-|+.++.+++++...
T Consensus 259 f~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~e 325 (435)
T PF03378_consen 259 FVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCE 325 (435)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhc
Confidence 66666666666654 44554444443 55555555421 1 1 2344567777777777653
No 246
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.32 E-value=4.2 Score=42.00 Aligned_cols=197 Identities=18% Similarity=0.131 Sum_probs=97.3
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCChh-
Q 043116 72 VPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLAS----PSDDVREQAVWALGNVAGDSSR- 146 (482)
Q Consensus 72 ~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~~- 146 (482)
+..+.+++.... .. ...|...|..+......... ..+..+..++.. .++.++..|+-+++.+......
T Consensus 397 v~~i~~~I~~~~-~~-~~ea~~~l~~l~~~~~~Pt~-----e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~ 469 (618)
T PF01347_consen 397 VKFIKDLIKSKK-LT-DDEAAQLLASLPFHVRRPTE-----ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN 469 (618)
T ss_dssp HHHHHHHHHTT--S--HHHHHHHHHHHHHT-----H-----HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC-CC-HHHHHHHHHHHHhhcCCCCH-----HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence 445556665543 11 22244444444332212211 234555555553 4566777777777766521100
Q ss_pred --------hHHHHHHhCChHHHHHHHc---chhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccC---Chh
Q 043116 147 --------CRDFVLSQGALIPLLAELN---EHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSN---DEK 212 (482)
Q Consensus 147 --------~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~---~~~ 212 (482)
..........++.+...+. ...+..-+..++.+|.|+-. ...++.+..++... ...
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~ 539 (618)
T PF01347_consen 470 SDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHF 539 (618)
T ss_dssp -----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HH
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchH
Confidence 0011112234566666664 22344556667788888753 24566677766655 567
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCC--CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHh
Q 043116 213 VLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH--RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLL 290 (482)
Q Consensus 213 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll 290 (482)
+|..|+++|..++...++... +.++++..+ .+.++|..|+..|.. .+|.. ..+..+...+
T Consensus 540 ~R~~Ai~Alr~~~~~~~~~v~--------~~l~~I~~n~~e~~EvRiaA~~~lm~---~~P~~-------~~l~~i~~~l 601 (618)
T PF01347_consen 540 IRVAAIQALRRLAKHCPEKVR--------EILLPIFMNTTEDPEVRIAAYLILMR---CNPSP-------SVLQRIAQSL 601 (618)
T ss_dssp HHHHHHHTTTTGGGT-HHHHH--------HHHHHHHH-TTS-HHHHHHHHHHHHH---T---H-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCcHHHH--------HHHHHHhcCCCCChhHHHHHHHHHHh---cCCCH-------HHHHHHHHHH
Confidence 888888888888766554332 566666644 345677777665543 23432 2345566777
Q ss_pred cCCCchhHHHHHH
Q 043116 291 IHNHNKSIKKEVC 303 (482)
Q Consensus 291 ~~~~~~~v~~~a~ 303 (482)
...++..|.....
T Consensus 602 ~~E~~~QV~sfv~ 614 (618)
T PF01347_consen 602 WNEPSNQVASFVY 614 (618)
T ss_dssp TT-S-HHHHHHHH
T ss_pred hhCchHHHHHHHH
Confidence 6664566655443
No 247
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=93.31 E-value=12 Score=39.29 Aligned_cols=129 Identities=16% Similarity=0.110 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHh
Q 043116 127 DDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLI 206 (482)
Q Consensus 127 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll 206 (482)
+.++..++-+++++|-......+ ..+|.+++-|..++...++.+.+-++..+|..- ..+....+|.+...|
T Consensus 945 ~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAASL 1015 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHHh
Confidence 56778888899999854433222 257888888877777777777777777776542 234467899999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 043116 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVT 268 (482)
Q Consensus 207 ~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 268 (482)
.++++-++...+-.|.++.+..--. +...++-+++.-+-+.+++++..|=.+++.+..
T Consensus 1016 ~Dp~~iVRrqt~ilL~rLLq~~~vK----w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFGIVK----WNGELFIRFMLALLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred cCchHHHHHHHHHHHHHHHhhhhhh----cchhhHHHHHHHHcccCHHHHHHHHHHHHHHHh
Confidence 9999999999999999998543211 122334444555556777888888777777654
No 248
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.29 E-value=1.1 Score=38.01 Aligned_cols=111 Identities=13% Similarity=0.104 Sum_probs=71.9
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHH-hccCCcHHHHHHHHhCcHHHHHHhhCC---------CChhhHHHHHHHHhHh
Q 043116 197 PALRVLAQLIRSNDEKVLTDACRALAY-LADGTNDKIQAVIEAGVCPRLVKLLGH---------RSRLVLTAALRTIGNI 266 (482)
Q Consensus 197 ~~~~~L~~ll~~~~~~~~~~~l~~L~~-l~~~~~~~~~~~~~~~~l~~L~~ll~~---------~~~~v~~~a~~~L~~l 266 (482)
.....++..+.+..... ..+..|.. |-..+....+.+++.|++..|+.+|.. .+......++.|+..+
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 34444555555443221 23333322 223444567778888888998888743 2346788899999999
Q ss_pred hcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 043116 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNIT 310 (482)
Q Consensus 267 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~ 310 (482)
+.........+-..+++..+...+.++ +..+|..++..|+.+|
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~-~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLDSP-NIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT--TT-SHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Confidence 875555444444578999999999988 9999999999998886
No 249
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=93.26 E-value=6 Score=35.55 Aligned_cols=213 Identities=12% Similarity=0.080 Sum_probs=130.6
Q ss_pred chhhhhHHHHHHHHHHHhhcCCCCC--ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHH
Q 043116 166 EHAKLSMLRTATWTLSNFCRGKPQP--PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPR 243 (482)
Q Consensus 166 ~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~ 243 (482)
.++++.++..++.+|+.+...-+.. ......-++.....-+ .|......++.++..+.....-.... ...++..
T Consensus 9 tsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl--~D~~~~~~~l~gl~~L~~~~~~~~~~--~~~i~~~ 84 (262)
T PF14500_consen 9 TSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL--DDHACVQPALKGLLALVKMKNFSPES--AVKILRS 84 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh--ccHhhHHHHHHHHHHHHhCcCCChhh--HHHHHHH
Confidence 5678888999999999888765422 2222334444444444 35556666677776666332211110 1122333
Q ss_pred HHHhhC--CCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 043116 244 LVKLLG--HRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVI 321 (482)
Q Consensus 244 L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 321 (482)
+.+... .-....|..+..++..+......... -+..+++..+++.++.+.||+.-..+...+..+...-+ +
T Consensus 85 l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~-~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~------~ 157 (262)
T PF14500_consen 85 LFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQ-SMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD------I 157 (262)
T ss_pred HHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHH-hchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc------c
Confidence 333222 22346888899999998875443332 23346888899999988899888887777777765211 1
Q ss_pred HcCChHHHHHHHh---------c-CCh--hHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHH
Q 043116 322 DAGLIGPIVNLLQ---------D-AEF--GTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLI 389 (482)
Q Consensus 322 ~~~~i~~L~~ll~---------~-~~~--~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~ 389 (482)
....+.+.+.+. . +++ -.+..-..+|.+... +++..... +++.|++-|.++.+.++.-++.
T Consensus 158 -~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~-s~~~fa~~-----~~p~LleKL~s~~~~~K~D~L~ 230 (262)
T PF14500_consen 158 -SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS-STPLFAPF-----AFPLLLEKLDSTSPSVKLDSLQ 230 (262)
T ss_pred -chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc-CcHhhHHH-----HHHHHHHHHcCCCcHHHHHHHH
Confidence 234444555443 1 122 245566667777665 35666555 8999999999999888887777
Q ss_pred HHHHHHH
Q 043116 390 GLENILK 396 (482)
Q Consensus 390 ~L~~l~~ 396 (482)
.|...+.
T Consensus 231 tL~~c~~ 237 (262)
T PF14500_consen 231 TLKACIE 237 (262)
T ss_pred HHHHHHH
Confidence 7777654
No 250
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=93.22 E-value=1.6 Score=35.85 Aligned_cols=147 Identities=11% Similarity=0.060 Sum_probs=87.4
Q ss_pred hhhHHHHHHHHhccC-ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhh
Q 043116 195 IRPALRVLAQLIRSN-DEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQ 273 (482)
Q Consensus 195 ~~~~~~~L~~ll~~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 273 (482)
...+++.|..+++++ ++++|..++++++.+..-++...+...... +.- .-...+.......+.. .......++
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~~--~~~~~~~~~~~~~l~~-~~~~~~~ee- 81 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DSK--SSENSNDESTDISLPM-MGISPSSEE- 81 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Ccc--ccccccccchhhHHhh-ccCCCchHH-
Confidence 357888889998865 589999999999999988876544222110 000 0001111122222211 111111222
Q ss_pred HHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhh
Q 043116 274 TQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAG-NREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNAT 352 (482)
Q Consensus 274 ~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~ 352 (482)
..-...+..|+.+|+++.-..-...+..++.++... ......++- .++|.+++.++..++..++....-|+.+.
T Consensus 82 ---~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~--~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 82 ---YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP--QVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred ---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH--HHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 222346778888998875555566777787777742 222233333 38999999999777788888777777765
No 251
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=93.15 E-value=0.69 Score=37.14 Aligned_cols=74 Identities=8% Similarity=0.024 Sum_probs=63.7
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC-CCHHHHHHHHHHHHHHHHhc
Q 043116 325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC-PDPQIVTVCLIGLENILKVG 398 (482)
Q Consensus 325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~~l~~L~~l~~~~ 398 (482)
.+..|..-+.+.++.++..|+..|..++.++.......+.+..++..|..++.. .++.|+.+++..+.......
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 556666677889999999999999999999998888888889999999999987 77889999999888876543
No 252
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=93.14 E-value=8.5 Score=36.99 Aligned_cols=190 Identities=11% Similarity=0.043 Sum_probs=115.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCC--CcHHHHHhcCCHHHHHHhhcCCCC----h--HHHHHHHHHHHHHhCCC
Q 043116 31 TMVAGVWSDDNKVQLEATTLFRKMLSFDRN--SPIEKVIQSGVVPRFVEFLMREDY----P--QLQFEAARALTNIASGT 102 (482)
Q Consensus 31 ~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~g~~~~L~~ll~~~~~----~--~v~~~a~~~L~~l~~~~ 102 (482)
.+..+.+..+.+-++.|+....++....+- ...+.+.+.-+++.+-+++.+.+- | -.+.-++.+|...|+ .
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~-~ 93 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR-V 93 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC-C
Confidence 356666777778899999999999987532 234557788888998888875431 2 245667778888887 5
Q ss_pred hHhH--HHHHhCCChHHHHHhhCC-CC------HHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHH
Q 043116 103 SENT--KVAIDHGAVPIFVKLLAS-PS------DDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSML 173 (482)
Q Consensus 103 ~~~~--~~~~~~g~i~~L~~ll~~-~~------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~ 173 (482)
|+.. ..++ +-||.|++++.. .+ ..+.+.+-.+|..++... .....++..|.++.+.++-.-+....-.
T Consensus 94 pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e-~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ 170 (698)
T KOG2611|consen 94 PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAE-AGLMTLIASGGLRVIAQMYELPDGSHDM 170 (698)
T ss_pred hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCC-chhHHHHhcCchHHHHHHHhCCCCchhH
Confidence 5543 3333 358889988864 22 236778888999998764 4567778899999998766322211112
Q ss_pred HHHHHHHHHhhcCC--CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHh
Q 043116 174 RTATWTLSNFCRGK--PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYL 224 (482)
Q Consensus 174 ~~a~~~L~~L~~~~--~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l 224 (482)
.-++.++.-+...- =......+..++..+..=+...+.......+..|..+
T Consensus 171 alal~Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~v 223 (698)
T KOG2611|consen 171 ALALKVLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAV 223 (698)
T ss_pred HHHHHHHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 22333322222221 0111122223344444444445566667777777643
No 253
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=93.10 E-value=6.3 Score=35.40 Aligned_cols=223 Identities=13% Similarity=0.092 Sum_probs=133.5
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcch-hhhhHHHHHHHHHHHhhcCCCCCChhhh
Q 043116 117 IFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEH-AKLSMLRTATWTLSNFCRGKPQPPFNQI 195 (482)
Q Consensus 117 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 195 (482)
.|-..|.++++.+|..|+.+|+.+...-+.. . ....-+..++....+. .|......++..+..|.... .......
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~--~-L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~-~~~~~~~ 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD--F-LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMK-NFSPESA 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh--h-ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCc-CCChhhH
Confidence 4556788899999999999999888554421 1 1112234444443221 34445555577777777443 2222233
Q ss_pred hhHHHHHHHHhc--cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCC-CChhhHHHHHHHHhHhhcCChh
Q 043116 196 RPALRVLAQLIR--SNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH-RSRLVLTAALRTIGNIVTGDDF 272 (482)
Q Consensus 196 ~~~~~~L~~ll~--~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~ 272 (482)
..++..+.+-.+ +.-...|..+...+..+..+....... ...+++..++..+.. .||.-...++..+..+....+-
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~-~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS-MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh-chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 444444444322 233567888888888888664433321 223567777777754 5788777788777777654331
Q ss_pred hHHHHHhcCchHHHHHHhcC--------CC-ch--hHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 043116 273 QTQCIINCGALRYLLGLLIH--------NH-NK--SIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTK 341 (482)
Q Consensus 273 ~~~~l~~~~~i~~L~~ll~~--------~~-~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~ 341 (482)
....+.+.+.+.. +. ++ -.+..-...|.++...++.. ..-.+|.|++-|.++.+.++
T Consensus 158 -------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~K 225 (262)
T PF14500_consen 158 -------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSVK 225 (262)
T ss_pred -------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHHH
Confidence 2334444444421 11 22 24455556666666554442 23478899999999999999
Q ss_pred HHHHHHHHHhhcCCC
Q 043116 342 KEAAWVISNATSGGT 356 (482)
Q Consensus 342 ~~a~~aL~~l~~~~~ 356 (482)
..++.+|..++..-.
T Consensus 226 ~D~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 226 LDSLQTLKACIENYG 240 (262)
T ss_pred HHHHHHHHHHHHHCC
Confidence 999999998876433
No 254
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.06 E-value=3.3 Score=35.07 Aligned_cols=146 Identities=18% Similarity=0.195 Sum_probs=91.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHH
Q 043116 29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKV 108 (482)
Q Consensus 29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 108 (482)
++.+++..-+++..++..|+..+.-+...+=-.+ ...+|.++.+..+++ +.++..|...+..+....+.....
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP------~~cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNP------KQCVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh------HHHHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5777888889999999999999998887641111 126899999999999 999999999999998755555433
Q ss_pred HHhCCChHHH--HHhhCCCCH-HH---HHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchh-------hhhHHHH
Q 043116 109 AIDHGAVPIF--VKLLASPSD-DV---REQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHA-------KLSMLRT 175 (482)
Q Consensus 109 ~~~~g~i~~L--~~ll~~~~~-~~---~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-------~~~~~~~ 175 (482)
-...|+-... ..-+..... .. .......+..+...+...|..+ +..+++.+.... ...-...
T Consensus 83 ~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~~ 157 (187)
T PF12830_consen 83 RYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLDF 157 (187)
T ss_pred HHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHHH
Confidence 3333322221 111222111 11 4455666667776555555554 456666663322 2334455
Q ss_pred HHHHHHHhhcC
Q 043116 176 ATWTLSNFCRG 186 (482)
Q Consensus 176 a~~~L~~L~~~ 186 (482)
..++..||+.-
T Consensus 158 ~~Fla~nLA~l 168 (187)
T PF12830_consen 158 LLFLAENLATL 168 (187)
T ss_pred HHHHHHHHhcC
Confidence 66666666655
No 255
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.02 E-value=17 Score=40.20 Aligned_cols=148 Identities=16% Similarity=0.115 Sum_probs=91.7
Q ss_pred CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 043116 239 GVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQ 318 (482)
Q Consensus 239 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 318 (482)
+++|.|-.-|.+.+..+|..|...+|.+......... --........+.-+.+. +..||.++.....++...++....
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence 6788888888899999999999999999874443211 01124556666677777 888999999988888776555322
Q ss_pred HHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHh
Q 043116 319 AVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKV 397 (482)
Q Consensus 319 ~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~ 397 (482)
... ....+.. .+.|+.++.....++..+.. ......+... .+..+.+.+.+..+.|+..|+..|..+++.
T Consensus 337 ~~~---~~~~l~~--~~~D~~~rir~~v~i~~~~v---~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 337 AST---ILLALRE--RDLDEDVRVRTQVVIVACDV---MKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHH---HHHHHHh--hcCChhhhheeeEEEEEeeh---hHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 211 1222221 23344444332222221111 1122222333 566666777788889999999999998873
No 256
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=92.99 E-value=1.6 Score=43.95 Aligned_cols=135 Identities=18% Similarity=0.124 Sum_probs=93.8
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCC
Q 043116 111 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQP 190 (482)
Q Consensus 111 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~ 190 (482)
...+++.|...+++.+..+++.++..+..++..-+. ..+..-++|.+-.+...+.+..++.+++-|+..+... .
T Consensus 387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~---l 460 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR---L 460 (700)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH---H
Confidence 345678888888999999999999999988843321 2334446788877776778888999999999988832 2
Q ss_pred ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCC
Q 043116 191 PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRS 252 (482)
Q Consensus 191 ~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~ 252 (482)
+....-..+..+....+..++.+....+++..++....... ..+....+++.++.+...+.
T Consensus 461 D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 461 DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence 33333445555666677889999988888888877544432 23444466777776665444
No 257
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=92.95 E-value=1.9 Score=34.60 Aligned_cols=74 Identities=8% Similarity=0.016 Sum_probs=62.9
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCC-CCCHHHHHHHHHHHHHHHHhc
Q 043116 325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP-CPDPQIVTVCLIGLENILKVG 398 (482)
Q Consensus 325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~l~~L~~l~~~~ 398 (482)
.+..|..-+.++++.++..|+..|..++.++.......+.+.++++.|..++. ..++.|+.+++..+.......
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 56667777788999999999999999999988888888888899999999887 567789999999988887544
No 258
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=92.75 E-value=8.6 Score=36.03 Aligned_cols=163 Identities=14% Similarity=0.150 Sum_probs=118.5
Q ss_pred hHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHH-cCC-hHHHHHHHhc-----CC--------hhHHHHHHH
Q 043116 283 LRYLLGLLIHNHNKSIKKEVCWIISNITA-GNREQIQAVID-AGL-IGPIVNLLQD-----AE--------FGTKKEAAW 346 (482)
Q Consensus 283 i~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~-~~~-i~~L~~ll~~-----~~--------~~~~~~a~~ 346 (482)
++.+...|.+. ...+...+...|..++. ........++. -++ .+.+-.++.. ++ +.+|...+.
T Consensus 58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 77788889888 77788899999999998 66666666664 333 4455555531 11 289999999
Q ss_pred HHHHhhcCCCHHHHHHHHHc-CChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHH
Q 043116 347 VISNATSGGTHEQIKHLVRE-GCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEK 425 (482)
Q Consensus 347 aL~~l~~~~~~~~~~~l~~~-~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 425 (482)
.+..+...+++.....+++. +.+..+..-+..++++++...+..|..-+-.++.... ..+..+-....+.+
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r--------~~K~~~fn~~~L~~ 208 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSR--------STKCKLFNEWTLSQ 208 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCCh--------hhhhhhcCHHHHHH
Confidence 99999988888877777754 6688888888888889999999998865443333221 12333335667888
Q ss_pred HHHhhcCCCH----HHHHHHHHHHHHhcCCCCC
Q 043116 426 IENLQSHDNN----DIHEMSVKILETYWCGRVV 454 (482)
Q Consensus 426 l~~l~~~~~~----~v~~~a~~~l~~~~~~~~~ 454 (482)
|..+-..+++ .+.+.+.+.+..+.-+...
T Consensus 209 l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 209 LASLYSRDGEDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred HHHHhcccCCcccchHHHHHHHHHHHHhcCCCc
Confidence 9998777777 8899999999887754444
No 259
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.57 E-value=1.7 Score=38.99 Aligned_cols=145 Identities=18% Similarity=0.217 Sum_probs=101.9
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHH
Q 043116 196 RPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQ 275 (482)
Q Consensus 196 ~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 275 (482)
...+...+..|.+.+++.....+..+..++...++.....+. .++-.+++-+++....|-..||.+++.+...-.....
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777888999999999999999999877655443333 4566677778888888999999999999874443333
Q ss_pred HHHhcCchHHHHHHhcC-C--CchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHh
Q 043116 276 CIINCGALRYLLGLLIH-N--HNKSIKKEVCWIISNITAG-NREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNA 351 (482)
Q Consensus 276 ~l~~~~~i~~L~~ll~~-~--~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l 351 (482)
. -++.++..|.+ . .+..++..|-.+|..+..+ .|. .+++.|+..+...++.++..++.+..+.
T Consensus 166 ~-----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~--------~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 166 Q-----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ--------KLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred H-----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH--------HHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 2 23333333322 1 1556888898888888763 333 3566777778888888888888777666
Q ss_pred hcC
Q 043116 352 TSG 354 (482)
Q Consensus 352 ~~~ 354 (482)
...
T Consensus 233 v~r 235 (334)
T KOG2933|consen 233 VIR 235 (334)
T ss_pred cee
Confidence 543
No 260
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=92.37 E-value=2.5 Score=39.85 Aligned_cols=219 Identities=18% Similarity=0.118 Sum_probs=111.9
Q ss_pred HhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 043116 67 IQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR 146 (482)
Q Consensus 67 ~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 146 (482)
+...++..+..++..+.++......+.++..-.... ..-+...++..+.+-+.+..+.+|+.-+..++......+.
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~ 94 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN 94 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence 334456667777765543566666666666544311 1112234567778888887777998888888887641111
Q ss_pred hHHHHHHhCChHHHHHHHcchhhhhHHH------HHHHHHHHhhcCC-CCCCh-hhhhhH-----HHH-H--HHHhcc-C
Q 043116 147 CRDFVLSQGALIPLLAELNEHAKLSMLR------TATWTLSNFCRGK-PQPPF-NQIRPA-----LRV-L--AQLIRS-N 209 (482)
Q Consensus 147 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~------~a~~~L~~L~~~~-~~~~~-~~~~~~-----~~~-L--~~ll~~-~ 209 (482)
....-.-..+++.++..+.......... .++.++..+.... +.... ...... =|. + -++... .
T Consensus 95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~ 174 (339)
T PF12074_consen 95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLA 174 (339)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccC
Confidence 1111112236777777774322111111 1222222211111 00000 000000 000 0 012222 4
Q ss_pred ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC--ChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHH
Q 043116 210 DEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR--SRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLL 287 (482)
Q Consensus 210 ~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~ 287 (482)
+++-....++++..+..+.......-....+-..++.++.++ .+.+|..|+.++..+...++.. +...++..+.
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l~ 250 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGLW 250 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHH
Confidence 555666677777776654332221111223456788888777 7899999999999998877764 2234556666
Q ss_pred HHhcCC
Q 043116 288 GLLIHN 293 (482)
Q Consensus 288 ~ll~~~ 293 (482)
+.+...
T Consensus 251 ~~l~~~ 256 (339)
T PF12074_consen 251 KWLSSS 256 (339)
T ss_pred HHHHhc
Confidence 666544
No 261
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=92.30 E-value=7.6 Score=34.30 Aligned_cols=205 Identities=14% Similarity=0.090 Sum_probs=116.9
Q ss_pred hHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHH
Q 043116 157 LIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVI 236 (482)
Q Consensus 157 i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 236 (482)
++.++.-+.+..+++.....+.+|..++..+ . ....-++..+..+...+..+...-+.+.+..+-...+...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~---~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHK---N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccC---c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence 4455555667788889999999999999885 1 3345667777777777777776677777777776554322
Q ss_pred HhCcHHHHHHh-----h---C--CCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHh-cCCCchhHHHHHHHH
Q 043116 237 EAGVCPRLVKL-----L---G--HRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLL-IHNHNKSIKKEVCWI 305 (482)
Q Consensus 237 ~~~~l~~L~~l-----l---~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~~v~~~a~~~ 305 (482)
+.+..++.. . . +...+.......++..++...++... .+++.+..++ ++. ++.++..+..+
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~-----~ll~~ls~~L~~~~-~~~~~alale~ 145 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV-----DLLPLLSGCLNQSC-DEVAQALALEA 145 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH-----HHHHHHHHHHhccc-cHHHHHHHHHH
Confidence 233333333 1 1 12233445556678888876666322 3567788888 566 88888899999
Q ss_pred HHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHH
Q 043116 306 ISNITAGNREQIQAVIDAGLIGPIVNLLQ-DAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQ 382 (482)
Q Consensus 306 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~ 382 (482)
+..++...--.... ....+..-+. +..+.+.+..+..+..+....-...........++..+-++..+.+.+
T Consensus 146 l~~Lc~~~vvd~~s-----~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~ 218 (234)
T PF12530_consen 146 LAPLCEAEVVDFYS-----AWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVN 218 (234)
T ss_pred HHHHHHHhhccHHH-----HHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccc
Confidence 99998421111111 2222222223 234555544333333332221111112223445666666666666543
No 262
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=92.08 E-value=2.6 Score=32.55 Aligned_cols=94 Identities=11% Similarity=0.159 Sum_probs=64.8
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHH-HHh
Q 043116 342 KEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLV-EEA 420 (482)
Q Consensus 342 ~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l-~~~ 420 (482)
.....-|.+++.. ++..... +++.|..-|++.++.|+.+++.+|..++..+... |...+ ..+
T Consensus 19 gy~~~Eia~~t~~-s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~-----------f~~~~~~~~ 81 (122)
T cd03572 19 GYLYEEIAKLTRK-SVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD-----------FKRELQRNS 81 (122)
T ss_pred hHHHHHHHHHHHc-CHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH-----------HHHHHHHhH
Confidence 3344455556554 3333333 6778888888888999999999999999876532 44433 333
Q ss_pred chHHHHHHhhc--------CCCHHHHHHHHHHHHHhcCCC
Q 043116 421 EGLEKIENLQS--------HDNNDIHEMSVKILETYWCGR 452 (482)
Q Consensus 421 ~~~~~l~~l~~--------~~~~~v~~~a~~~l~~~~~~~ 452 (482)
..+..+.+... +++..|+..|..++.-+|.++
T Consensus 82 ~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~~ 121 (122)
T cd03572 82 AQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSYS 121 (122)
T ss_pred HHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhccC
Confidence 55666666643 346789999999999998875
No 263
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.57 E-value=9.2 Score=39.10 Aligned_cols=164 Identities=14% Similarity=0.154 Sum_probs=92.6
Q ss_pred hhHHHHHHHHhccC----ChhHHHHHHHHHHHhcc---CCcHHHHHHHHhCcHHHHHHhh----CCCChhhHHHHHHHHh
Q 043116 196 RPALRVLAQLIRSN----DEKVLTDACRALAYLAD---GTNDKIQAVIEAGVCPRLVKLL----GHRSRLVLTAALRTIG 264 (482)
Q Consensus 196 ~~~~~~L~~ll~~~----~~~~~~~~l~~L~~l~~---~~~~~~~~~~~~~~l~~L~~ll----~~~~~~v~~~a~~~L~ 264 (482)
...+..+..++.++ ++.++..++.+++.+.. .............+++.+...+ +..+...+...+++|+
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 45666667777643 45677777777776662 1111100011123445555444 3455566777899999
Q ss_pred HhhcCChhhHHHHHhcCchHHHHHHhc--CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh--cCChhH
Q 043116 265 NIVTGDDFQTQCIINCGALRYLLGLLI--HNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ--DAEFGT 340 (482)
Q Consensus 265 ~l~~~~~~~~~~l~~~~~i~~L~~ll~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~--~~~~~~ 340 (482)
|+.. +. .++.+...+. ...+..+|..|+|+|..++...+.. +-+.+++++. ..++++
T Consensus 472 N~g~--~~---------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~Ev 532 (574)
T smart00638 472 NAGH--PS---------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEV 532 (574)
T ss_pred ccCC--hh---------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHH
Confidence 9865 22 2233344443 2225689999999999987644553 3444555655 467889
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCC-CCCHHHHHHHHH
Q 043116 341 KKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP-CPDPQIVTVCLI 389 (482)
Q Consensus 341 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~l~ 389 (482)
|..|..+|...-- +.. .+..+...+. +++.+|...+..
T Consensus 533 RiaA~~~lm~t~P--~~~---------~l~~ia~~l~~E~~~QV~sfv~S 571 (574)
T smart00638 533 RMAAVLVLMETKP--SVA---------LLQRIAELLNKEPNLQVASFVYS 571 (574)
T ss_pred HHHHHHHHHhcCC--CHH---------HHHHHHHHHhhcCcHHHHHHhHH
Confidence 9888877664421 222 2444444444 455566655443
No 264
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.49 E-value=19 Score=37.15 Aligned_cols=304 Identities=13% Similarity=0.064 Sum_probs=160.5
Q ss_pred CCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHH--hCCh
Q 043116 81 REDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASP-SDDVREQAVWALGNVAGDSSRCRDFVLS--QGAL 157 (482)
Q Consensus 81 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i 157 (482)
.++..-+|+..+|.++.-.. .++...... -+-..+++++++. |..++-.++.++.....+-.-..+.+.. ....
T Consensus 497 ~~~~RiiRRRVa~ilg~Wvs--vq~~~e~k~-l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf 573 (978)
T KOG1993|consen 497 HGNSRIIRRRVAWILGQWVS--VQQKLELKP-LLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLF 573 (978)
T ss_pred ccchhHHHHHHHHHHhhhhh--eechHhHHH-HHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHH
Confidence 34434578889999998765 222221111 1346778888876 6667778888888777433222222221 1234
Q ss_pred HHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc--cCChhHHHHHHHHHHHhccCCcHHHHHH
Q 043116 158 IPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR--SNDEKVLTDACRALAYLADGTNDKIQAV 235 (482)
Q Consensus 158 ~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~--~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 235 (482)
..+..++..-+..+.+-..+.+++.+..............+++.+-.+=. .+.+-.+...+.+|.++...-......+
T Consensus 574 ~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~ 653 (978)
T KOG1993|consen 574 VLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEF 653 (978)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccc
Confidence 44555565555667777788888877765322221222223332222222 3456677888888888874311111101
Q ss_pred HHhCcHHHHHHhhCCC-Chh---hHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 043116 236 IEAGVCPRLVKLLGHR-SRL---VLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA 311 (482)
Q Consensus 236 ~~~~~l~~L~~ll~~~-~~~---v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 311 (482)
. .++-..+.+-.++ +|+ ..+.+...-.....+.+.....+. +++|.+..+++.. .... ..+..++.....
T Consensus 654 ~--~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~~iE~s-te~L-~t~l~Ii~sYil 727 (978)
T KOG1993|consen 654 Y--PFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLYIIEQS-TENL-PTVLMIISSYIL 727 (978)
T ss_pred h--HHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHHHHHhh-hhhH-HHHHHHHHHHHh
Confidence 0 1222333333332 222 333343333333333333323232 4677788777665 4333 344445544443
Q ss_pred -CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcC--CCCCHHHHHHHH
Q 043116 312 -GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLL--PCPDPQIVTVCL 388 (482)
Q Consensus 312 -~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll--~~~~~~v~~~~l 388 (482)
.++...+ -...|++..+.+++.+-..+-....+..+..+... + .-...+...++++.+..-. +.+.|.+.-.-+
T Consensus 728 Ld~~~fl~-~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t-~-~il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl 804 (978)
T KOG1993|consen 728 LDNTVFLN-DYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKT-N-PILGSLLFSPLLSRLFLSIAENDKYPYVMGEYL 804 (978)
T ss_pred hccHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh-h-HHHHhhhcchhhHHHHHHHHhCCCCchhHHHHH
Confidence 4444332 23357888999998876667777777888877763 2 3444445566666665533 345555555555
Q ss_pred HHHHHHHH
Q 043116 389 IGLENILK 396 (482)
Q Consensus 389 ~~L~~l~~ 396 (482)
.++.++.-
T Consensus 805 ~vvaRi~l 812 (978)
T KOG1993|consen 805 LVVARISL 812 (978)
T ss_pred HHHHHHHh
Confidence 55555543
No 265
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=91.10 E-value=0.85 Score=36.56 Aligned_cols=75 Identities=11% Similarity=0.076 Sum_probs=61.8
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhC
Q 043116 26 FEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIAS 100 (482)
Q Consensus 26 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 100 (482)
..++..|.+.+++.++.++..|+..|..+....+.....++.+.+++..|+.++.....+.++..++..+...+.
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 347888899999999999999999999998876555567777889999999999754448899999888887764
No 266
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=90.88 E-value=3.5 Score=32.63 Aligned_cols=76 Identities=8% Similarity=-0.066 Sum_probs=62.6
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC---CCHHHHHHHHHHHHHHHHhchh
Q 043116 325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC---PDPQIVTVCLIGLENILKVGEA 400 (482)
Q Consensus 325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~---~~~~v~~~~l~~L~~l~~~~~~ 400 (482)
++..|..-+.++++.++..|+..|-.++.++.+.+...+....++..|..++.. .++.|+.+++..+.........
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 566677778889999999999999999999888787777777788889998875 4678999999998888765443
No 267
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=90.80 E-value=0.97 Score=36.31 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=62.8
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhC
Q 043116 27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIAS 100 (482)
Q Consensus 27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 100 (482)
.++..|.+.+++.++.++..|+..|-.+....+.....++.+.+++..|+.++.....+.++..++..+...+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 46888889999999999999999999999877556667778889999999999884338999999988888764
No 268
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.68 E-value=23 Score=36.70 Aligned_cols=279 Identities=11% Similarity=0.072 Sum_probs=123.9
Q ss_pred hhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHH----H---HHHhhcCCCChHHHHHHHHHH
Q 043116 23 QSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVP----R---FVEFLMREDYPQLQFEAARAL 95 (482)
Q Consensus 23 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~----~---L~~ll~~~~~~~v~~~a~~~L 95 (482)
...+..+|.+++.+.++...+.-.|+.++.++.....+.+....-...+.| . ++..++.+. ..--+..++++
T Consensus 494 ~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~-~~EneylmKaI 572 (960)
T KOG1992|consen 494 EHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPG-KAENEYLMKAI 572 (960)
T ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCc-ccccHHHHHHH
Confidence 345567999999999999999999999999998764332222222222332 1 222222332 11112222333
Q ss_pred HHHhCCChHhHHHHHhCCChHHHHH----hhCCC-CHHHHHHH----HHHHHHhhCCChhhHHHHHHhCChHHHHHHHcc
Q 043116 96 TNIASGTSENTKVAIDHGAVPIFVK----LLASP-SDDVREQA----VWALGNVAGDSSRCRDFVLSQGALIPLLAELNE 166 (482)
Q Consensus 96 ~~l~~~~~~~~~~~~~~g~i~~L~~----ll~~~-~~~~~~~a----~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~ 166 (482)
-.+..-.++....... ..+..|.+ ..+++ +|..-... .-++...|..++..-. -.+...+|.+-..+ .
T Consensus 573 mRii~i~~~~i~p~~~-~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs-~~e~aL~p~fq~Il-~ 649 (960)
T KOG1992|consen 573 MRIISILQSAIIPHAP-ELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVS-SLEEALFPVFQTIL-S 649 (960)
T ss_pred HHHHHhCHHhhhhhhh-HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHH-HHHHHHHHHHHHHH-H
Confidence 3322212222100000 12233333 33443 33333322 2333333333333222 22333555555555 4
Q ss_pred hhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCCh---hHHHHHHHHHHHhccCCcHHHHHHH-HhCcHH
Q 043116 167 HAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDE---KVLTDACRALAYLADGTNDKIQAVI-EAGVCP 242 (482)
Q Consensus 167 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~---~~~~~~l~~L~~l~~~~~~~~~~~~-~~~~l~ 242 (482)
.+=.+..-++...++.+..............++|. +++..-+ .-.-.+.+.+..+....+......- -.+++.
T Consensus 650 eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~---lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLG 726 (960)
T KOG1992|consen 650 EDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPP---LLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILG 726 (960)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHH---hcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHH
Confidence 44456667788888887776543222222233332 2221111 1122233333333333332221111 124555
Q ss_pred HHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 043116 243 RLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNIT 310 (482)
Q Consensus 243 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~ 310 (482)
.+-+++.++..+ ......|.++...-+...-.-.-.++.-.+.+.++.+..++..+...-.++-++
T Consensus 727 ifqkLiaSka~D--h~GF~LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT~kf~k~~~vF~~~~~ 792 (960)
T KOG1992|consen 727 IFQKLIASKAND--HHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKTEKFVKSFIVFFSLFT 792 (960)
T ss_pred HHHHHhcCcccc--hhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 555666544322 345556665655433221111112455667777776645554444444444333
No 269
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=90.18 E-value=4.6 Score=32.00 Aligned_cols=74 Identities=8% Similarity=-0.012 Sum_probs=60.8
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCH--HHHHHHHHHHHHHHHhc
Q 043116 325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDP--QIVTVCLIGLENILKVG 398 (482)
Q Consensus 325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~--~v~~~~l~~L~~l~~~~ 398 (482)
++..|..-+.++++.++..|+..|..++.++...+...+.+.++++.|..++..+.. .|+.+++..+.......
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 455667777889999999999999999999888888888888999999998886443 38988888888876543
No 270
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=90.16 E-value=13 Score=32.99 Aligned_cols=124 Identities=19% Similarity=0.288 Sum_probs=74.9
Q ss_pred ccchhchhhhhhhccHHHHHHHhc-----------CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC
Q 043116 14 SAPALSLNLQSKFEILPTMVAGVW-----------SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMRE 82 (482)
Q Consensus 14 ~~~~~~~~~~~~~~~i~~l~~~l~-----------s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~ 82 (482)
+.+.....+.+....+|.|++.|. +++....+.|+..|..+-.. ..++.++++++.+
T Consensus 18 P~~al~~A~~~~e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~re~------------~A~~~li~l~~~~ 85 (249)
T PF06685_consen 18 PREALEAAIEQREEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQFREE------------RALPPLIRLFSQD 85 (249)
T ss_pred cHHHHHHHHHCHHHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHHhhh------------hhHHHHHHHHcCC
Confidence 344444444444455666666664 12233455666666655322 2689999999876
Q ss_pred CCh-------HHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCC--HHHHHHHHHHHHHhhCCChhhHHHHHH
Q 043116 83 DYP-------QLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPS--DDVREQAVWALGNVAGDSSRCRDFVLS 153 (482)
Q Consensus 83 ~~~-------~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~ 153 (482)
+.. -+-+...+++..++. |-++.|.+++.+++ .-+|..|+.+|..+....+..|+.+.+
T Consensus 86 ~~~~~~l~GD~~tE~l~~ilasv~~------------G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 86 DDFLEDLFGDFITEDLPRILASVGD------------GDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQ 153 (249)
T ss_pred cchHHHHHcchhHhHHHHHHHHHhC------------CCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 621 122223333333333 66788888887654 568899999999999888777777655
Q ss_pred hCChHHHHHH
Q 043116 154 QGALIPLLAE 163 (482)
Q Consensus 154 ~~~i~~l~~~ 163 (482)
.+..++..
T Consensus 154 --~f~~ll~~ 161 (249)
T PF06685_consen 154 --YFRELLNY 161 (249)
T ss_pred --HHHHHHHH
Confidence 34444444
No 271
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=90.10 E-value=9.2 Score=39.59 Aligned_cols=159 Identities=16% Similarity=0.206 Sum_probs=111.7
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH
Q 043116 27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT 106 (482)
Q Consensus 27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 106 (482)
..|..|+..+.|.+..+...+-..+....... .+.. ++..|+.+.-+..+ ..++.+|..+-. |.-+
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~-~~~~-------l~~~l~~y~~~t~s----~~~~~il~~~~~--P~~K 69 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSD-REPW-------LVNGLVDYYLSTNS----QRALEILVGVQE--PHDK 69 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhcc-chHH-------HHHHHHHHHhhcCc----HHHHHHHHhcCC--ccHH
Confidence 45788999999999888888888887777664 2221 36667776444442 446667776632 3211
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcC
Q 043116 107 KVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG 186 (482)
Q Consensus 107 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~ 186 (482)
.++..|-+.+.. +.-|..++..|+.+....|..--.+.+...+..|+..|..+.+..+...|+.+|..|.-.
T Consensus 70 ------~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 70 ------HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred ------HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 234556666654 467778999999999877777777888899999999998888888888899999888876
Q ss_pred CCCCChhhhhhHHHHHHHHhc
Q 043116 187 KPQPPFNQIRPALRVLAQLIR 207 (482)
Q Consensus 187 ~~~~~~~~~~~~~~~L~~ll~ 207 (482)
-+..-......++.....++.
T Consensus 142 ip~~l~~~L~~Lf~If~Rl~~ 162 (668)
T PF04388_consen 142 IPSSLGPHLPDLFNIFGRLLS 162 (668)
T ss_pred ccchhhHHHHHHHHHHHHHHH
Confidence 655444445556665555553
No 272
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=90.04 E-value=4.9 Score=34.35 Aligned_cols=137 Identities=7% Similarity=0.115 Sum_probs=89.7
Q ss_pred HHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcC----CCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHH
Q 043116 258 AALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIH----NHNKSIKKEVCWIISNITA-GNREQIQAVIDAGLIGPIVNL 332 (482)
Q Consensus 258 ~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~----~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~l 332 (482)
.|+..|.-++ ..++....++++.+--.+...|.. .....+|..+.+.++.+.. +++..+..+....++|..+++
T Consensus 119 naL~lLQcla-ShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI 197 (315)
T COG5209 119 NALNLLQCLA-SHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI 197 (315)
T ss_pred HHHHHHHHHh-cCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence 3444444444 467666767777654444444432 2245688889999999998 677777888889999999999
Q ss_pred HhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHH--------cCChHHHHh-cCCCCCHHHHHHHHHHHHHHHHh
Q 043116 333 LQDAEFGTKKEAAWVISNATSGGTHEQIKHLVR--------EGCVKPLCD-LLPCPDPQIVTVCLIGLENILKV 397 (482)
Q Consensus 333 l~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~--------~~~l~~L~~-ll~~~~~~v~~~~l~~L~~l~~~ 397 (482)
++.++.--+.-++..+..+..+. ...+++.+ ..++..++. +.+.+...+.+.++.+.-++...
T Consensus 198 me~gSElSktvaifI~qkil~dD--vGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~ 269 (315)
T COG5209 198 MELGSELSKTVAIFIFQKILGDD--VGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK 269 (315)
T ss_pred HHhhhHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence 99888777777888888776632 22222221 123333333 44556677888777777666543
No 273
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=89.41 E-value=1.5 Score=34.75 Aligned_cols=74 Identities=11% Similarity=0.051 Sum_probs=60.0
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChH-HHHHHHHHHHHHhC
Q 043116 27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQ-LQFEAARALTNIAS 100 (482)
Q Consensus 27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~-v~~~a~~~L~~l~~ 100 (482)
.++..|.+.+++.++.++..|+..|-.+....+.....++.+.+++..|..+++...... ++..++..+...+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 367888888999999999999999999998765555677778889999999988765334 88888888777654
No 274
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=89.35 E-value=12 Score=31.62 Aligned_cols=146 Identities=16% Similarity=0.125 Sum_probs=90.0
Q ss_pred ChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHH
Q 043116 156 ALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAV 235 (482)
Q Consensus 156 ~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~ 235 (482)
.++.+++.. -+.+..++..|+.++..+.+.+=..+ ..++|.++.+..++++.++..|...+..+.+..+.....-
T Consensus 9 yl~~Il~~~-~~~~~~vr~~Al~~l~~il~qGLvnP----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~ 83 (187)
T PF12830_consen 9 YLKNILELC-LSSDDSVRLAALQVLELILRQGLVNP----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR 83 (187)
T ss_pred HHHHHHHHH-hCCCHHHHHHHHHHHHHHHhcCCCCh----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 355677766 67788899999999999888761111 4689999999999999999999999999987666544433
Q ss_pred HHhCcHHHHH--HhhCCCCh-hh---HHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCC-------chhHHHHH
Q 043116 236 IEAGVCPRLV--KLLGHRSR-LV---LTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNH-------NKSIKKEV 302 (482)
Q Consensus 236 ~~~~~l~~L~--~ll~~~~~-~v---~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~-------~~~v~~~a 302 (482)
+..|+-...- ..+..+.. .. ...-+..+..+...+....+. ++..+++.+.... .+.-....
T Consensus 84 ~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~-----Fl~~l~k~f~~~~~~~~~~~~~~~l~~~ 158 (187)
T PF12830_consen 84 YSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRK-----FLKSLLKQFDFDLTKLSSESSPSDLDFL 158 (187)
T ss_pred HHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHH-----HHHHHHHHHHhhccccccccchhHHHHH
Confidence 3333222111 11211111 11 444556666666655554443 3445555554431 23344556
Q ss_pred HHHHHHHhc
Q 043116 303 CWIISNITA 311 (482)
Q Consensus 303 ~~~L~nl~~ 311 (482)
.++.-|++.
T Consensus 159 ~Fla~nLA~ 167 (187)
T PF12830_consen 159 LFLAENLAT 167 (187)
T ss_pred HHHHHHHhc
Confidence 666666665
No 275
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=89.12 E-value=2.4 Score=33.61 Aligned_cols=74 Identities=15% Similarity=0.092 Sum_probs=59.5
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC--CChHHHHHHHHHHHHHhC
Q 043116 27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMRE--DYPQLQFEAARALTNIAS 100 (482)
Q Consensus 27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~--~~~~v~~~a~~~L~~l~~ 100 (482)
.++..|.+.++++++.++..|+..|-.+....+......+....++..++.++... ..+.++..++..+...+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 36888889999999999999999999999877444555666668888899999763 337899999988888765
No 276
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.66 E-value=34 Score=35.87 Aligned_cols=94 Identities=16% Similarity=0.086 Sum_probs=54.3
Q ss_pred CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHH--H-HHHHHHhcCCHHHHHHHHHcCChH
Q 043116 251 RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEV--C-WIISNITAGNREQIQAVIDAGLIG 327 (482)
Q Consensus 251 ~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a--~-~~L~nl~~~~~~~~~~l~~~~~i~ 327 (482)
.+++++..|+.+|.|+.+..+...... +..+..+..++.....+ - ..|-+.. ...+..+-..++|.
T Consensus 674 ~Dpei~~~AL~vIincVc~pp~~r~s~--------i~~v~S~~g~~r~~l~~~~ks~~le~~l---~~mw~~Vr~ndGIk 742 (1516)
T KOG1832|consen 674 VDPEIIQPALNVIINCVCPPPTTRPST--------IVAVGSQSGDRRIFLGAGTKSAKLEQVL---RQMWEAVRGNDGIK 742 (1516)
T ss_pred cCHHHHHHHHhhhheeecCCCCcchhh--------hhhccccCCCccccccCCCchHHHHHHH---HHHHHHHhcCccHH
Confidence 378999999999999998665443322 22222221122111000 0 0111111 12223333577899
Q ss_pred HHHHHHhcCC-----hhHHHHHHHHHHHhhcCC
Q 043116 328 PIVNLLQDAE-----FGTKKEAAWVISNATSGG 355 (482)
Q Consensus 328 ~L~~ll~~~~-----~~~~~~a~~aL~~l~~~~ 355 (482)
.|+.+++... ..+|..|+.+|.-++...
T Consensus 743 iLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~ 775 (1516)
T KOG1832|consen 743 ILLKLLQYKNPPTTADCIRALACRVLLGLARDD 775 (1516)
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHhccccCc
Confidence 9999998543 458888999999998843
No 277
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=88.62 E-value=23 Score=33.84 Aligned_cols=180 Identities=15% Similarity=0.151 Sum_probs=100.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCc-HHHHHhcCCHHHHHHhhc----C------CCChHHHHHHHHHHHHHhCCChHhH
Q 043116 38 SDDNKVQLEATTLFRKMLSFDRNSP-IEKVIQSGVVPRFVEFLM----R------EDYPQLQFEAARALTNIASGTSENT 106 (482)
Q Consensus 38 s~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~g~~~~L~~ll~----~------~~~~~v~~~a~~~L~~l~~~~~~~~ 106 (482)
+.+.+-+..|-..|.+......+.+ ...+.+ -++.+.+.++ + +.+.++-.+|+++|+.+.. +++..
T Consensus 4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~-~~~i~ 80 (372)
T PF12231_consen 4 GSDRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLY-HPEIV 80 (372)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHc-cHHHH
Confidence 4455566677666776666543222 222221 2344444332 2 1126788999999999987 56655
Q ss_pred HHHHhCC---ChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHc---c-hhhhhHHHHHH
Q 043116 107 KVAIDHG---AVPIFVKLLAS--PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELN---E-HAKLSMLRTAT 177 (482)
Q Consensus 107 ~~~~~~g---~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~-~~~~~~~~~a~ 177 (482)
..+-+.- ++...+..+.+ .+..+...++|+|..=-... .++....+..++..+. + -.+..+....+
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~-----~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL 155 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSP-----KIMTSDRVERLLAALHNIKNRFPSKSIISERL 155 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC-----cccchhhHHHHHHHHHHhhccCCchhHHHHHH
Confidence 4443322 23444555543 34567777777777543221 1223334444544442 2 34567788888
Q ss_pred HHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 043116 178 WTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLA 225 (482)
Q Consensus 178 ~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~ 225 (482)
.++.++....|..-......=+|.++..+-+....++..+..++..+.
T Consensus 156 ~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 156 NIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 999999887654433333434566666555666667776666555443
No 278
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.60 E-value=25 Score=38.76 Aligned_cols=98 Identities=17% Similarity=0.150 Sum_probs=63.4
Q ss_pred CCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcc---hh---hhhHHHHHHHHHHHhhcCC-CCCChhhhh
Q 043116 124 SPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNE---HA---KLSMLRTATWTLSNFCRGK-PQPPFNQIR 196 (482)
Q Consensus 124 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~---~~---~~~~~~~a~~~L~~L~~~~-~~~~~~~~~ 196 (482)
.+..+++...+.++.++....-+ .+.. | .+.+++++.. .. ...+.+.+..+|.-++.+. +........
T Consensus 853 ~~~~evr~~sl~~l~silet~ge---~ll~-~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~ 927 (1610)
T KOG1848|consen 853 SRGVEVRISSLEALVSILETVGE---HLLH-G-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCIL 927 (1610)
T ss_pred CccceeeHHHHHHHHHHHhccch---hhcc-c-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHH
Confidence 45566777777888888743321 1221 2 4445555421 11 3467777888888888776 666667778
Q ss_pred hHHHHHHHHhc-cCChhHHHHHHHHHHHhcc
Q 043116 197 PALRVLAQLIR-SNDEKVLTDACRALAYLAD 226 (482)
Q Consensus 197 ~~~~~L~~ll~-~~~~~~~~~~l~~L~~l~~ 226 (482)
+++..+..+-+ ..|..+--.++..++++++
T Consensus 928 ~lidtl~~fs~QktdlNISltAi~lfWtvsD 958 (1610)
T KOG1848|consen 928 DLIDTLLVFSRQKTDLNISLTAIGLFWTVSD 958 (1610)
T ss_pred HHHHHHHHHHhhhccccccHHHHHHHHHHHH
Confidence 88888888765 4567777777777777764
No 279
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=88.47 E-value=1.4 Score=38.06 Aligned_cols=84 Identities=13% Similarity=0.203 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHhcC-------CHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH-HHHHhCC
Q 043116 42 KVQLEATTLFRKMLSFDRNSPIEKVIQSG-------VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT-KVAIDHG 113 (482)
Q Consensus 42 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~g-------~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g 113 (482)
+-|..|+.+|++++-.++ +++.++..+ ++..|++++....++-.|+-|+-.|.+++..+.... ....+.+
T Consensus 139 SPqrlaLEaLcKLsV~e~--NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIEN--NVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CHHHHHHHHHHHhheecc--CcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 568899999999997743 344444333 556677777776658899999999999999776665 4555778
Q ss_pred ChHHHHHhhCCCCH
Q 043116 114 AVPIFVKLLASPSD 127 (482)
Q Consensus 114 ~i~~L~~ll~~~~~ 127 (482)
.+..|+.++.+...
T Consensus 217 ~i~~Li~FiE~a~~ 230 (257)
T PF12031_consen 217 CISHLIAFIEDAEQ 230 (257)
T ss_pred hHHHHHHHHHHHHH
Confidence 89999999975443
No 280
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=88.41 E-value=13 Score=37.07 Aligned_cols=223 Identities=13% Similarity=0.006 Sum_probs=121.7
Q ss_pred cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhC--C---------CChhhHHHHHHHHhHhhcCChhhHHH
Q 043116 208 SNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLG--H---------RSRLVLTAALRTIGNIVTGDDFQTQC 276 (482)
Q Consensus 208 ~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~--~---------~~~~v~~~a~~~L~~l~~~~~~~~~~ 276 (482)
+++.++...+-..|..+...-+ +..++..|..+.. . -++.++...+..|..=. ...
T Consensus 248 d~~~~V~~~ae~~LKr~~~~~e-------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~---~Aa--- 314 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVSLE-------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSV---IAA--- 314 (501)
T ss_pred CCcchHHHHHHHHHhhcCCCCC-------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhH---HHH---
Confidence 3456666666666766664311 1234455555443 1 24456666555554311 100
Q ss_pred HHhcCchHHHHHHhcCC-CchhHHHHHHHHH---HHHhcC-CHHHH---HHHHHcCChHHHHH----HHhcCChhHHHHH
Q 043116 277 IINCGALRYLLGLLIHN-HNKSIKKEVCWII---SNITAG-NREQI---QAVIDAGLIGPIVN----LLQDAEFGTKKEA 344 (482)
Q Consensus 277 l~~~~~i~~L~~ll~~~-~~~~v~~~a~~~L---~nl~~~-~~~~~---~~l~~~~~i~~L~~----ll~~~~~~~~~~a 344 (482)
-.-...+..+..-+.+. .+.++|..+...+ .....+ .+... ...+..++.+.+-. -....+...|..+
T Consensus 315 ~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~a 394 (501)
T PF13001_consen 315 TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLA 394 (501)
T ss_pred hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHH
Confidence 00012222333333332 1456776776666 555543 33333 33334555555510 0123567899999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHH
Q 043116 345 AWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLE 424 (482)
Q Consensus 345 ~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 424 (482)
..+|+.++.... ... ..+-+.+..|.+-+..++++++..+-++|..+.......... ...-.......
T Consensus 395 Ye~lG~L~~~~p-~l~--~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~---------~~~~~~~~~~~ 462 (501)
T PF13001_consen 395 YETLGLLAKRAP-SLF--SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDD---------EDEQKRLLLEL 462 (501)
T ss_pred HHHHHHHHccCc-ccc--cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccc---------hhHHHHHHHHH
Confidence 999999998643 321 123457888888888899999999999999998654432110 00000111112
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 043116 425 KIENLQSHDNNDIHEMSVKILETYWCGRVVG 455 (482)
Q Consensus 425 ~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 455 (482)
.+.....+....++-.|.+-.+.+|+.++.+
T Consensus 463 l~~~~~~~~~~~~R~~avk~an~~fpf~d~~ 493 (501)
T PF13001_consen 463 LLLSYIQSEVRSCRYAAVKYANACFPFSDVP 493 (501)
T ss_pred HHHhhccchhHHHHHHHHHHHHHhCCccchH
Confidence 2333344566778899999999999988764
No 281
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=88.29 E-value=2 Score=34.17 Aligned_cols=73 Identities=10% Similarity=0.059 Sum_probs=60.0
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC------CCChHHHHHHHHHHHHHhC
Q 043116 27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMR------EDYPQLQFEAARALTNIAS 100 (482)
Q Consensus 27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~------~~~~~v~~~a~~~L~~l~~ 100 (482)
.++..+.+.+++.++.++..|+..|-.+....+.....++.+.+++.-+++++.. .+ +.|+...+..+...+.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~-~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTS-EKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCC-HHHHHHHHHHHHHHHH
Confidence 4688889999999999999999999999887655566777788899999999963 34 7899988888777654
No 282
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=88.12 E-value=2.5 Score=33.83 Aligned_cols=74 Identities=8% Similarity=0.007 Sum_probs=59.1
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC-CCHH---HHHHHHHHHHHHHHhc
Q 043116 325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC-PDPQ---IVTVCLIGLENILKVG 398 (482)
Q Consensus 325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~---v~~~~l~~L~~l~~~~ 398 (482)
++..|..-+.++++.++..|+..|-.++.++.+.+...+....+++.|..++.. .... |+.+++..+.......
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 455677777889999999999999999998877777777777888889987764 3333 8888888888776554
No 283
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=87.74 E-value=37 Score=35.14 Aligned_cols=199 Identities=14% Similarity=0.115 Sum_probs=101.7
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHHhCChHHHHHHHcch---hhhhHHHHHHHHHHHhhcCC--
Q 043116 114 AVPIFVKLLASPSDDVREQAVWALGNVAGDS-SRCRDFVLSQGALIPLLAELNEH---AKLSMLRTATWTLSNFCRGK-- 187 (482)
Q Consensus 114 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~---~~~~~~~~a~~~L~~L~~~~-- 187 (482)
.+..+.+++.+....-.+ +...|..+.... ....+ .+..+..++... .+..+...|+.+++.+....
T Consensus 396 av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~Pt~e------~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRPTEE------LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----HH------HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCCCHH------HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 355666666654332222 344444443222 11122 234455555321 23445555665665555422
Q ss_pred C--------CCChhhhhhHHHH----HHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC---C
Q 043116 188 P--------QPPFNQIRPALRV----LAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR---S 252 (482)
Q Consensus 188 ~--------~~~~~~~~~~~~~----L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~---~ 252 (482)
. .........+++. +.......+.+-+..++.+|+|+... ..++.+.+++... +
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-----------~~i~~l~~~i~~~~~~~ 537 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-----------ESIPVLLPYIEGKEEVP 537 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-----------GGHHHHHTTSTTSS-S-
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-----------hhhHHHHhHhhhccccc
Confidence 0 1122222333444 44444566778899999999998732 2467788887665 5
Q ss_pred hhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHH
Q 043116 253 RLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIH-NHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVN 331 (482)
Q Consensus 253 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ 331 (482)
..+|..|+++|..++...+... .+.++.++.+ .++.++|..|...|... ..+.. .+..+..
T Consensus 538 ~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~~-~P~~~---------~l~~i~~ 599 (618)
T PF01347_consen 538 HFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMRC-NPSPS---------VLQRIAQ 599 (618)
T ss_dssp HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHHT----HH---------HHHHHHH
T ss_pred hHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHhc-CCCHH---------HHHHHHH
Confidence 6799999999999877666543 3446666654 33678888887666543 22222 3344445
Q ss_pred HHh-cCChhHHHHHHHHH
Q 043116 332 LLQ-DAEFGTKKEAAWVI 348 (482)
Q Consensus 332 ll~-~~~~~~~~~a~~aL 348 (482)
.+. +++.+|...+...|
T Consensus 600 ~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 600 SLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HHTT-S-HHHHHHHHHHH
T ss_pred HHhhCchHHHHHHHHHhc
Confidence 554 45566666555443
No 284
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=87.73 E-value=9.9 Score=34.71 Aligned_cols=138 Identities=14% Similarity=0.188 Sum_probs=75.0
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH-HHHHhCCChHHHHH----hhC--------CCCHHHHHHHHHHH
Q 043116 71 VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT-KVAIDHGAVPIFVK----LLA--------SPSDDVREQAVWAL 137 (482)
Q Consensus 71 ~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~----ll~--------~~~~~~~~~a~~~L 137 (482)
++|.++.++++.+ +.++..++.+|..+....+... ..+...|..+.+-+ ++. .+...+...+.-++
T Consensus 120 iiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 6899999999998 9999999999999987444333 33666776554443 443 34455666777777
Q ss_pred HHhhCC---C-hhhHHHHHHhCChHHHHHHHcchhh---hhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccC
Q 043116 138 GNVAGD---S-SRCRDFVLSQGALIPLLAELNEHAK---LSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSN 209 (482)
Q Consensus 138 ~~l~~~---~-~~~~~~~~~~~~i~~l~~~l~~~~~---~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~ 209 (482)
..++.. . ...+......-+-..++.-+....+ +.+....+..+..+...-..........+++.+.+.+.++
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 777421 1 1111111111111113333322222 4555555555555554422223333456666666655543
No 285
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=87.59 E-value=7 Score=35.38 Aligned_cols=177 Identities=14% Similarity=0.128 Sum_probs=99.3
Q ss_pred HHHHHHHhhcCCCCCCh--hhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhC--cHHHHHHhhC--
Q 043116 176 ATWTLSNFCRGKPQPPF--NQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAG--VCPRLVKLLG-- 249 (482)
Q Consensus 176 a~~~L~~L~~~~~~~~~--~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~--~l~~L~~ll~-- 249 (482)
-...|..+......... .........+...+....++.+-.++..++-++.+.+. ...+...+ ....+..++.
T Consensus 40 el~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~-~~~~~~~~~~~~~~l~~~~~~~ 118 (268)
T PF08324_consen 40 ELESLESLLSALKSTSAYHSDLSAWLILLLKILLSWPPESRFPALDLLRLAALHPPA-SDLLASEDSGIADLLSTLISSG 118 (268)
T ss_dssp HHHHHHHHHCCCCCC-SS---HHHHHHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCH-HHHHHSTTTH-HHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHhCCCccchhHHhHHHHHHhCccH-HHHHhccccchHHHHHHHHHhc
Confidence 33445555554322111 12445566677777777777889999999888765443 23333322 2333443332
Q ss_pred --CCChhhHHHHHHHHhHhhcCChhhHHHHHhc-C-chHHHHHHhcCCC---chhHHHHHHHHHHHHhcCCHHHH-HHHH
Q 043116 250 --HRSRLVLTAALRTIGNIVTGDDFQTQCIINC-G-ALRYLLGLLIHNH---NKSIKKEVCWIISNITAGNREQI-QAVI 321 (482)
Q Consensus 250 --~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-~-~i~~L~~ll~~~~---~~~v~~~a~~~L~nl~~~~~~~~-~~l~ 321 (482)
...+..+.-+++++.|+..+.... ..+... + .+...+..+.... +..++..++..+.|++....... ..-.
T Consensus 119 ~~~~~~~~~ml~lR~l~NlF~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~ 197 (268)
T PF08324_consen 119 SSSSPPANQMLALRLLANLFSHPPGR-QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEW 197 (268)
T ss_dssp TTTSSHHHHHHHHHHHHHHTTSCCCH-HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCH
T ss_pred cCCCcHHHHHHHHHHHHHhhCCCccH-HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 245678888999999999855443 334332 2 2333333333331 67899999999999975110100 0001
Q ss_pred HcCChHHHHHHHh--cCChhHHHHHHHHHHHhhcC
Q 043116 322 DAGLIGPIVNLLQ--DAEFGTKKEAAWVISNATSG 354 (482)
Q Consensus 322 ~~~~i~~L~~ll~--~~~~~~~~~a~~aL~~l~~~ 354 (482)
...++..+.+.+. ..+++....++.|++++...
T Consensus 198 ~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~ 232 (268)
T PF08324_consen 198 QSELLSSIIEVLSREESDEEALYRLLVALGTLLSS 232 (268)
T ss_dssp HHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhcc
Confidence 1113455555333 36899999999999999964
No 286
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=87.50 E-value=27 Score=33.29 Aligned_cols=145 Identities=10% Similarity=0.129 Sum_probs=78.9
Q ss_pred hHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh---cCChhHHHHHHHHHHHhhcCCCHH-
Q 043116 283 LRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ---DAEFGTKKEAAWVISNATSGGTHE- 358 (482)
Q Consensus 283 i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~---~~~~~~~~~a~~aL~~l~~~~~~~- 358 (482)
.+.+-.-++..+...-|..|+..+..++....+....++. +.+..++.-.. +.++.-+..|+..++.++..+...
T Consensus 212 ~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~ 290 (370)
T PF08506_consen 212 EEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTK 290 (370)
T ss_dssp HHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BT
T ss_pred HHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhcccc
Confidence 3334444443323456677888888887643333333322 13333332211 346778888999999998865211
Q ss_pred ----------HHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHH
Q 043116 359 ----------QIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIEN 428 (482)
Q Consensus 359 ----------~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~ 428 (482)
....+....+++.|. --.+..|-++..|++.+..+-..-+ .+. -.+.++.+.+
T Consensus 291 ~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~--------------~~~--l~~~~~~l~~ 353 (370)
T PF08506_consen 291 SGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP--------------KEQ--LLQIFPLLVN 353 (370)
T ss_dssp TB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS---------------HHH--HHHHHHHHHH
T ss_pred CCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC--------------HHH--HHHHHHHHHH
Confidence 234455556677666 2223445566666666555532211 222 2346788999
Q ss_pred hhcCCCHHHHHHHHHHH
Q 043116 429 LQSHDNNDIHEMSVKIL 445 (482)
Q Consensus 429 l~~~~~~~v~~~a~~~l 445 (482)
.+.+++.-|+..|...|
T Consensus 354 ~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 354 HLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HTTSS-HHHHHHHHHHH
T ss_pred HhCCCCcchhhhhhhhC
Confidence 99999999999887654
No 287
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=87.43 E-value=23 Score=32.72 Aligned_cols=174 Identities=13% Similarity=0.123 Sum_probs=102.0
Q ss_pred ChhhHHHHHHHHhHhhcCChhhHHHHHhc-----------CchHHHHHHhc------CCCchhHHHHHHHHHHHHhcCCH
Q 043116 252 SRLVLTAALRTIGNIVTGDDFQTQCIINC-----------GALRYLLGLLI------HNHNKSIKKEVCWIISNITAGNR 314 (482)
Q Consensus 252 ~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-----------~~i~~L~~ll~------~~~~~~v~~~a~~~L~nl~~~~~ 314 (482)
.-.+|..|+.|+..+..++++.+..+++. .....+...|- +. ++.-...|+.++..+..+++
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~-dpy~~wfAa~il~hll~dn~ 129 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSL-DPYRCWFAAVILMHLLRDNP 129 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS--HHHHHHHHHHHHHHHTT-H
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccC-CHHHHHHHHHHHHHHHhcCH
Confidence 45689999999999999888776666522 11223554444 33 55556788999999988877
Q ss_pred HHHHHHHHc--C----------ChHHHHHHHh-----cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcC-ChHHHHhcC
Q 043116 315 EQIQAVIDA--G----------LIGPIVNLLQ-----DAEFGTKKEAAWVISNATSGGTHEQIKHLVREG-CVKPLCDLL 376 (482)
Q Consensus 315 ~~~~~l~~~--~----------~i~~L~~ll~-----~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~-~l~~L~~ll 376 (482)
+.+..+..- | .++.+..+|. ..++.++..-+..|+.+... ++.....++.++ .+..|++..
T Consensus 130 ~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e-~p~AV~~FL~~~s~l~~Li~~~ 208 (312)
T PF04869_consen 130 EAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFE-CPDAVNDFLSEGSNLQSLIEFS 208 (312)
T ss_dssp HHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT--HHHHHHHHCSTTHHHHHHHHH
T ss_pred HHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhC-CHHHHHHHHcCcchHHHHHHHh
Confidence 765554431 1 2555555554 34677777777777777764 777777777764 688888864
Q ss_pred C---CCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHH-HHhchHHHHHHhhc
Q 043116 377 P---CPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLV-EEAEGLEKIENLQS 431 (482)
Q Consensus 377 ~---~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~l~~l~~ 431 (482)
. +.+.-|+-.|.-.|+-.+++....... ....+...+ .+.|.-..+..+..
T Consensus 209 ~~~~~~~~~VqGL~A~LLGicyef~~~~s~~----~R~~l~~ll~~riG~d~y~~kl~~ 263 (312)
T PF04869_consen 209 NQSSSEDVLVQGLCAFLLGICYEFSTKDSPI----PRATLHPLLTKRIGRDNYFSKLEQ 263 (312)
T ss_dssp S--TCCCHHHHHHHHHHHHHHHHT-S-SCCC-----HHHHHHHHHHHT-HHHHHHHHHC
T ss_pred hcCCCCcchHHHHHHHHHHHHHHhcCCCCCc----CHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3 234456666777888888776443321 123344444 45554444444433
No 288
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=87.36 E-value=5.8 Score=29.32 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=56.7
Q ss_pred HcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHH
Q 043116 365 REGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKI 444 (482)
Q Consensus 365 ~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~ 444 (482)
....+..|++-+..+.+.....++..+..+.+... ....+...|+.+.+.++...-++..+.....+
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~-------------a~~~l~~iG~~~fL~klr~~~~~~~~~~id~i 94 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPY-------------AAQILRDIGAVRFLSKLRPNVEPNLQAEIDEI 94 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcH-------------HHHHHHHccHHHHHHHHHhcCCHHHHHHHHHH
Confidence 44567778888888888888899999999886432 27778899999999999988889988888887
Q ss_pred HHH
Q 043116 445 LET 447 (482)
Q Consensus 445 l~~ 447 (482)
++.
T Consensus 95 l~~ 97 (98)
T PF14726_consen 95 LDQ 97 (98)
T ss_pred Hhc
Confidence 764
No 289
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=86.81 E-value=16 Score=30.12 Aligned_cols=116 Identities=17% Similarity=0.200 Sum_probs=70.5
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCC--ChHHHHHhhCCC-CHHHHHHHHHHHHHhh---CCC
Q 043116 71 VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHG--AVPIFVKLLASP-SDDVREQAVWALGNVA---GDS 144 (482)
Q Consensus 71 ~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~ll~~~-~~~~~~~a~~~L~~l~---~~~ 144 (482)
.+..+..++++++ +.-|-.++..+...+..++ .+.+.+.+ .+..++..++.+ ++.+.+.++.++..+. .+.
T Consensus 26 l~~ri~~LL~s~~-~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 26 LVTRINSLLQSKS-AYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHhCCCC-hhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4556788888888 7888888888888876431 23333333 467788888864 4667888888888776 444
Q ss_pred hhhHHHHHHhCChHHHHHHHcchhh-hhHHHHHHHHHHHhhcCCCCC
Q 043116 145 SRCRDFVLSQGALIPLLAELNEHAK-LSMLRTATWTLSNFCRGKPQP 190 (482)
Q Consensus 145 ~~~~~~~~~~~~i~~l~~~l~~~~~-~~~~~~a~~~L~~L~~~~~~~ 190 (482)
++..+.+... .++.++..+..-.+ ......++.+|..+....|..
T Consensus 103 p~l~Rei~tp-~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 103 PTLTREIATP-NLPKFIQSLLQLLQDSSCPETALDALATLLPHHPTT 148 (165)
T ss_pred CchHHHHhhc-cHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCCcc
Confidence 5543333222 23433333322111 455666777777777655443
No 290
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=86.56 E-value=41 Score=34.44 Aligned_cols=161 Identities=17% Similarity=0.206 Sum_probs=92.3
Q ss_pred hHHHHHHHcch---hhhhHHHHHHHHHHHhhcC----CCCCChhhhhhHHHHHHHHhc----cCChhHHHHHHHHHHHhc
Q 043116 157 LIPLLAELNEH---AKLSMLRTATWTLSNFCRG----KPQPPFNQIRPALRVLAQLIR----SNDEKVLTDACRALAYLA 225 (482)
Q Consensus 157 i~~l~~~l~~~---~~~~~~~~a~~~L~~L~~~----~~~~~~~~~~~~~~~L~~ll~----~~~~~~~~~~l~~L~~l~ 225 (482)
+..+..++... ....+...++.+++++... .+..........++.+...+. ..+.+.+...+.+|+|+.
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g 474 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG 474 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence 45566666322 2334555566666666542 222112334556666666554 456667888999999988
Q ss_pred cCCcHHHHHHHHhCcHHHHHHhhC-C--CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcC-CCchhHHHH
Q 043116 226 DGTNDKIQAVIEAGVCPRLVKLLG-H--RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIH-NHNKSIKKE 301 (482)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~L~~ll~-~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~v~~~ 301 (482)
.... +..+..++. + .+..+|..|+++|..++...+...+ +.++.++.+ .+++++|..
T Consensus 475 ~~~~-----------i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e~~EvRia 535 (574)
T smart00638 475 HPSS-----------IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYLNRAEPPEVRMA 535 (574)
T ss_pred ChhH-----------HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHcCCCCChHHHHH
Confidence 4322 344555553 2 3467999999999998865555433 345555544 447789888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCChhHHHHHHH
Q 043116 302 VCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ-DAEFGTKKEAAW 346 (482)
Q Consensus 302 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~a~~ 346 (482)
|+..|...- .+.. .+..+...+. +++.+|...+..
T Consensus 536 A~~~lm~t~-P~~~---------~l~~ia~~l~~E~~~QV~sfv~S 571 (574)
T smart00638 536 AVLVLMETK-PSVA---------LLQRIAELLNKEPNLQVASFVYS 571 (574)
T ss_pred HHHHHHhcC-CCHH---------HHHHHHHHHhhcCcHHHHHHhHH
Confidence 887776542 2233 2333444444 445666555443
No 291
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=86.53 E-value=3.1 Score=35.50 Aligned_cols=95 Identities=16% Similarity=0.072 Sum_probs=71.7
Q ss_pred HHHHhcCCHHHHHHHHHcCChHHHHHHHh-----cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCC
Q 043116 306 ISNITAGNREQIQAVIDAGLIGPIVNLLQ-----DAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPD 380 (482)
Q Consensus 306 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-----~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~ 380 (482)
+..+....|+....++++.+=-.+...+. +....+|..++.+++.+..++++...+.+....+++.....++.++
T Consensus 123 lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gS 202 (315)
T COG5209 123 LLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGS 202 (315)
T ss_pred HHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 33333445776667777665434444443 2345688999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHhchh
Q 043116 381 PQIVTVCLIGLENILKVGEA 400 (482)
Q Consensus 381 ~~v~~~~l~~L~~l~~~~~~ 400 (482)
.--+..+..++..++..+..
T Consensus 203 ElSktvaifI~qkil~dDvG 222 (315)
T COG5209 203 ELSKTVAIFIFQKILGDDVG 222 (315)
T ss_pred HHHHHHHHHHHHHHhccchh
Confidence 87777788888888865444
No 292
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=86.11 E-value=12 Score=44.26 Aligned_cols=264 Identities=14% Similarity=0.170 Sum_probs=141.2
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCCC-----CcHHHHHhcCCHHHHHHhh-cCCCChHHHHHHHHHHHHHhCCChHhHHHH
Q 043116 36 VWSDDNKVQLEATTLFRKMLSFDRN-----SPIEKVIQSGVVPRFVEFL-MREDYPQLQFEAARALTNIASGTSENTKVA 109 (482)
Q Consensus 36 l~s~~~~~~~~a~~~L~~l~~~~~~-----~~~~~~~~~g~~~~L~~ll-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 109 (482)
+..++++++..+...++.+...... +..-. ....++..+..+- ..++ +.++......+. ..+-...
T Consensus 490 ~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~-~v~~vl~~ll~~aia~~~-~~i~~~v~~~l~------~~~~~~l 561 (2341)
T KOG0891|consen 490 LEADDSEIRKNAALTCCELLKYDIICSQTSPHALQ-VVKEVLSALLTVAIADTD-PDIRIRVLSSLN------ERFDAQL 561 (2341)
T ss_pred HhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHH-HHHHHHHHHHHHhccCCC-cchhhhHHhhhc------cchhhhh
Confidence 4467788888887777766654311 00000 0112233333332 2344 666554443333 2222334
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHc---chhhhhHHHHHHHHHHHhhcC
Q 043116 110 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELN---EHAKLSMLRTATWTLSNFCRG 186 (482)
Q Consensus 110 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~L~~~ 186 (482)
.+.+.+..+...+.++.-.++..+...+++++..+|...--.. -...+..+. .+.-.-+...+..-+..+...
T Consensus 562 aQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~l----r~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~ 637 (2341)
T KOG0891|consen 562 AQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSL----RKTLLELLTELEFSGMARTKEESAKLLCELIIS 637 (2341)
T ss_pred cCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHH----HHHHHHHhchhhhcchHHhHHHHHHHhhHHHHH
Confidence 4445566677777788888999999999999977663211111 111111111 111111111111111111111
Q ss_pred CCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCC-CChhhHHHHHHHHhH
Q 043116 187 KPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH-RSRLVLTAALRTIGN 265 (482)
Q Consensus 187 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~ 265 (482)
.+..........+..+...+...++.+...+..++..|+....+......+ ..++.+.+.+.+ .+..-+..+++++++
T Consensus 638 ~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~ 716 (2341)
T KOG0891|consen 638 SPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQ 716 (2341)
T ss_pred HHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhh
Confidence 111122223445566677777788888888899999888655433333344 455666666544 445577888999999
Q ss_pred hhcCChhhHHHHH-hcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 043116 266 IVTGDDFQTQCII-NCGALRYLLGLLIHNHNKSIKKEVCWIISNITAG 312 (482)
Q Consensus 266 l~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 312 (482)
+.....-...... ..-++..+...+.......++.++...++++...
T Consensus 717 l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~ 764 (2341)
T KOG0891|consen 717 LESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL 764 (2341)
T ss_pred hhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence 9875432222111 1245666777777766677888888888877653
No 293
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=85.82 E-value=19 Score=32.48 Aligned_cols=156 Identities=17% Similarity=0.178 Sum_probs=90.8
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCC--ChHHHHHhhC----CCCHHHHHHHHHHHHHhhCCChh
Q 043116 73 PRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHG--AVPIFVKLLA----SPSDDVREQAVWALGNVAGDSSR 146 (482)
Q Consensus 73 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~ll~----~~~~~~~~~a~~~L~~l~~~~~~ 146 (482)
..+...+..=. ++-+.-++..++-++. ++.....+...+ +...+..++. +..+..+..++++++|+.....
T Consensus 66 ~~~~~~~~~Wp-~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~- 142 (268)
T PF08324_consen 66 ILLLKILLSWP-PESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP- 142 (268)
T ss_dssp HHHHHHHCCS--CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHhCC-CccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-
Confidence 33444443332 3446667777766665 455544444332 2344444332 3567888899999999986554
Q ss_pred hHHHHHHh-C-ChHHHHHHHcchh---hhhHHHHHHHHHHHhhcCC--CCCChhhhhhHHHHHHHHhc--cCChhHHHHH
Q 043116 147 CRDFVLSQ-G-ALIPLLAELNEHA---KLSMLRTATWTLSNFCRGK--PQPPFNQIRPALRVLAQLIR--SNDEKVLTDA 217 (482)
Q Consensus 147 ~~~~~~~~-~-~i~~l~~~l~~~~---~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~~~~L~~ll~--~~~~~~~~~~ 217 (482)
.+..+... + .+...+..+.... +..++..++..+.|++... ..........++..+.+.+. ..+++....+
T Consensus 143 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~ 222 (268)
T PF08324_consen 143 GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRL 222 (268)
T ss_dssp CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHH
T ss_pred cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHH
Confidence 44544433 2 2333333332322 6778888888888887643 11122233456677777433 3689999999
Q ss_pred HHHHHHhccCCcHH
Q 043116 218 CRALAYLADGTNDK 231 (482)
Q Consensus 218 l~~L~~l~~~~~~~ 231 (482)
+-+++++...++..
T Consensus 223 LvAlGtL~~~~~~~ 236 (268)
T PF08324_consen 223 LVALGTLLSSSDSA 236 (268)
T ss_dssp HHHHHHHHCCSHHH
T ss_pred HHHHHHHhccChhH
Confidence 99999999665543
No 294
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=85.74 E-value=52 Score=34.85 Aligned_cols=115 Identities=13% Similarity=0.081 Sum_probs=69.9
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhcccc
Q 043116 325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNT 404 (482)
Q Consensus 325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~ 404 (482)
+...+...+.++++.+....+.++.++..-......+ ...-++.-..-....-..+......+|.++....
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~------ 512 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFD------ 512 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCC------
Confidence 4555666666777777777777777776421111000 0000111111111111134444555566665542
Q ss_pred CCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 043116 405 DNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGRV 453 (482)
Q Consensus 405 ~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 453 (482)
++.....+.+.+....+-.+.-|+++++++.|..++...|+.+.
T Consensus 513 -----~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~ 556 (727)
T PF12726_consen 513 -----PSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDG 556 (727)
T ss_pred -----HHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCc
Confidence 34467888888999999999999999999999999999997544
No 295
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.62 E-value=40 Score=37.32 Aligned_cols=109 Identities=13% Similarity=0.108 Sum_probs=58.0
Q ss_pred hcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCC----------------CCCHHHHHHHHHHHHHHHHh
Q 043116 334 QDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP----------------CPDPQIVTVCLIGLENILKV 397 (482)
Q Consensus 334 ~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~----------------~~~~~v~~~~l~~L~~l~~~ 397 (482)
.++.++||..|+..+..+............-+.-+...+..+|+ ....+.....+.++.++|.-
T Consensus 1007 ~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e 1086 (1610)
T KOG1848|consen 1007 EDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSE 1086 (1610)
T ss_pred ccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHH
Confidence 35668889989988888864322111111122223334444443 12224555677777777742
Q ss_pred chhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043116 398 GEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYW 449 (482)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 449 (482)
.-+ ... ..|-+... ....++.+..+..+.++++.-.|.+.+++..
T Consensus 1087 ~fk--~ll---nln~f~~v--we~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1087 NFK--LLL---NLNGFLDV--WEELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred HHH--HHH---hcccHHHH--HHHHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence 211 110 01112221 2233566677778889999888888777643
No 296
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=85.51 E-value=52 Score=34.66 Aligned_cols=355 Identities=11% Similarity=0.076 Sum_probs=170.1
Q ss_pred HHHHHHHHhCCChHhHHHHHhCCChHHH---HHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcch
Q 043116 91 AARALTNIASGTSENTKVAIDHGAVPIF---VKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEH 167 (482)
Q Consensus 91 a~~~L~~l~~~~~~~~~~~~~~g~i~~L---~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~ 167 (482)
++.+|.-+.. ..+....+.+.|.=..+ .+.-+..+..+.-.++..|+.++.++. +...+++.+++.+|+..=..+
T Consensus 329 ~~q~l~~lge-y~e~lpv~~~~g~~~~~~~~~~~~q~~d~~l~~~~~k~~~~l~~h~k-fa~~fv~~~gi~kll~vpr~s 406 (1516)
T KOG1832|consen 329 CIQCLEILGE-YVEVLPVLHEKGVDVCIVLLERTSQLDDSPLLPDVMKLICALAAHRK-FAAMFVERRGILKLLAVPRVS 406 (1516)
T ss_pred HHHHHHHHHh-HHHHHHHHHHhCchhhhhhhhhhhccccccccHHHHHHHHHHHHhhH-HHHHHHHhhhhHHHhcCCCch
Confidence 4444444432 33444555555532222 222223444455567778888875554 456677888888777654222
Q ss_pred hhhhHHHHHHHHHHHhhcCCC------CCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcH
Q 043116 168 AKLSMLRTATWTLSNFCRGKP------QPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVC 241 (482)
Q Consensus 168 ~~~~~~~~a~~~L~~L~~~~~------~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l 241 (482)
. ...-...||+.+..... .....++..++..-+.++......-+.++...+..... .....+.+-....+
T Consensus 407 ~---~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~-frail~~fd~~d~l 482 (1516)
T KOG1832|consen 407 E---TFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQDQARKNSALFFAAAFV-FRAILDAFDAQDSL 482 (1516)
T ss_pred h---hhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHHHHHHhcchhhccchHHHHHHHHHH-HHHHHHHHhhhhHH
Confidence 1 12223344444443321 11222335566666666665443333332221111100 00111222223455
Q ss_pred HHHHHhhCC--------CC-----------hhhHHHHHHHHhHhhcCC-----hhhHHHHHhcCchHHHHHHhcCCCc--
Q 043116 242 PRLVKLLGH--------RS-----------RLVLTAALRTIGNIVTGD-----DFQTQCIINCGALRYLLGLLIHNHN-- 295 (482)
Q Consensus 242 ~~L~~ll~~--------~~-----------~~v~~~a~~~L~~l~~~~-----~~~~~~l~~~~~i~~L~~ll~~~~~-- 295 (482)
+.|+.++++ .+ .......|.++......+ +...+.-++.+.....+.-+..+..
T Consensus 483 ~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~ 562 (1516)
T KOG1832|consen 483 QKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPL 562 (1516)
T ss_pred HHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcc
Confidence 666665543 11 112223455554433211 1112222233444444443333211
Q ss_pred ---hhHHHHHHHHHHHHhcC-------CHHHHHHHHHcCChHHHHHHHhc--------CChhHHHHHHHHHHHhhcCCCH
Q 043116 296 ---KSIKKEVCWIISNITAG-------NREQIQAVIDAGLIGPIVNLLQD--------AEFGTKKEAAWVISNATSGGTH 357 (482)
Q Consensus 296 ---~~v~~~a~~~L~nl~~~-------~~~~~~~l~~~~~i~~L~~ll~~--------~~~~~~~~a~~aL~~l~~~~~~ 357 (482)
.+...+.+|-+-.+... .......+.+.+.+..++++..- +..++...|+.+|+-+.. -|
T Consensus 563 ~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~--iP 640 (1516)
T KOG1832|consen 563 DISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS--IP 640 (1516)
T ss_pred hhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe--cc
Confidence 12234445554444432 22334556777778888877652 234566777777776655 23
Q ss_pred HHHHHHHHc--------CChHHHHhcCC----CCCHHHHHHHHHHHHHHHHhchhccc----------------cCCCC-
Q 043116 358 EQIKHLVRE--------GCVKPLCDLLP----CPDPQIVTVCLIGLENILKVGEAEKN----------------TDNIG- 408 (482)
Q Consensus 358 ~~~~~l~~~--------~~l~~L~~ll~----~~~~~v~~~~l~~L~~l~~~~~~~~~----------------~~~~~- 408 (482)
.....+... .++..|++.-. --+++++..|+.+|.+..+-.+...+ .+...
T Consensus 641 ~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~k 720 (1516)
T KOG1832|consen 641 DIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTK 720 (1516)
T ss_pred hHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCc
Confidence 333333332 13444444332 23789999999999998765422110 00000
Q ss_pred ------cccHHHHHHHHhchHHHHHHhhcCCC-----HHHHHHHHHHHHHhcCCCC
Q 043116 409 ------DVNQYAQLVEEAEGLEKIENLQSHDN-----NDIHEMSVKILETYWCGRV 453 (482)
Q Consensus 409 ------~~~~~~~~l~~~~~~~~l~~l~~~~~-----~~v~~~a~~~l~~~~~~~~ 453 (482)
...+.....+..+|+..|.+|++-.+ .-++..|-+.+-.+-.+..
T Consensus 721 s~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~t 776 (1516)
T KOG1832|consen 721 SAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDT 776 (1516)
T ss_pred hHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcH
Confidence 11223444566788999999876544 4566777777766655543
No 297
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=85.43 E-value=3.3 Score=35.97 Aligned_cols=80 Identities=23% Similarity=0.275 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhCCChHhHHHHHhCCCh-------HHHHHhhC-CCCHHHHHHHHHHHHHhhCCChh-hHHHHHHhCC
Q 043116 86 QLQFEAARALTNIASGTSENTKVAIDHGAV-------PIFVKLLA-SPSDDVREQAVWALGNVAGDSSR-CRDFVLSQGA 156 (482)
Q Consensus 86 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i-------~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~ 156 (482)
.-|..|+.+|++++- .+.+.+.++..+-. ..|.+++. .+++-.|+.|+-.|.+++..+.. ++....+.+.
T Consensus 139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 458999999999987 55666666665543 44455554 47888999999999999976654 4566677788
Q ss_pred hHHHHHHHcc
Q 043116 157 LIPLLAELNE 166 (482)
Q Consensus 157 i~~l~~~l~~ 166 (482)
+..|+..+.+
T Consensus 218 i~~Li~FiE~ 227 (257)
T PF12031_consen 218 ISHLIAFIED 227 (257)
T ss_pred HHHHHHHHHH
Confidence 9999999943
No 298
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=85.35 E-value=28 Score=31.33 Aligned_cols=216 Identities=19% Similarity=0.151 Sum_probs=118.3
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhcCCC---CCcHHHHH------hc-CCHHHHHHhhcCC-CChHHHHHHHHHHHHHhCC
Q 043116 33 VAGVWSDDNKVQLEATTLFRKMLSFDR---NSPIEKVI------QS-GVVPRFVEFLMRE-DYPQLQFEAARALTNIASG 101 (482)
Q Consensus 33 ~~~l~s~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~------~~-g~~~~L~~ll~~~-~~~~v~~~a~~~L~~l~~~ 101 (482)
+.+|.+..+..-..|+..|.++...-+ ....+.+. .+ |..+-+..++-.+ .++...+.++..|..++..
T Consensus 13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~ 92 (262)
T PF14225_consen 13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPL 92 (262)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHHHHHHHHhcC
Confidence 566777777777777777777766531 11111111 12 4444444443211 1133456677777777652
Q ss_pred C-------hHhHHHHHhCCChHHHHHhhCCCC----HHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcch---
Q 043116 102 T-------SENTKVAIDHGAVPIFVKLLASPS----DDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEH--- 167 (482)
Q Consensus 102 ~-------~~~~~~~~~~g~i~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--- 167 (482)
. .+.|-.+.=.+.+|.++..+.+++ ......++..|+.+|.... ...+..++....+.
T Consensus 93 ~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~~fr 164 (262)
T PF14225_consen 93 PDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKGRFR 164 (262)
T ss_pred CCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhcCCC
Confidence 1 112222222245677777777666 1333456678888873221 11233444444332
Q ss_pred hhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh
Q 043116 168 AKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKL 247 (482)
Q Consensus 168 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 247 (482)
+..+....++..|..-.. | ......+..+..++.++-+.++...+..|..+...-+-... ...+++..+.++
T Consensus 165 ~~~dfl~~v~~~l~~~f~--P----~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispllrl 236 (262)
T PF14225_consen 165 DKDDFLSQVVSYLREAFF--P----DHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPLLRL 236 (262)
T ss_pred CHHHHHHHHHHHHHHHhC--c----hhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHHHHH
Confidence 233445555555543221 1 12256777788999888899999999999988865432222 334578888888
Q ss_pred hCCCChhhHHHHHHHHhHhh
Q 043116 248 LGHRSRLVLTAALRTIGNIV 267 (482)
Q Consensus 248 l~~~~~~v~~~a~~~L~~l~ 267 (482)
+.++.. ..|+.+|-++.
T Consensus 237 L~t~~~---~eAL~VLd~~v 253 (262)
T PF14225_consen 237 LQTDLW---MEALEVLDEIV 253 (262)
T ss_pred hCCccH---HHHHHHHHHHH
Confidence 876554 34454444443
No 299
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.85 E-value=62 Score=34.93 Aligned_cols=234 Identities=15% Similarity=0.152 Sum_probs=123.1
Q ss_pred hhhhccHHHHHHH-hcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhC-
Q 043116 23 QSKFEILPTMVAG-VWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIAS- 100 (482)
Q Consensus 23 ~~~~~~i~~l~~~-l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~- 100 (482)
+++++++..|-.. |++++.+.+...+..+.++-+.. .++-...-+.--+|.++.-+..-. ..+|...+.+|---..
T Consensus 462 VkdLeAvqmLqdiFLkaenkdlqaeVlnrmfkIftsh-peNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtv 539 (2799)
T KOG1788|consen 462 VKDLEAVQMLQDIFLKAENKDLQAEVLNRMFKIFTSH-PENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTV 539 (2799)
T ss_pred ccchHHHHHHHHHHHHhcCcchhhHHHHHHHHHhccC-hHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhh
Confidence 3445556655554 35778888888888888877654 333222335556788877776554 4556554444332111
Q ss_pred --CChHhHHHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchh---hhhHHH
Q 043116 101 --GTSENTKVAIDHGAVPIFVKLLASPS-DDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHA---KLSMLR 174 (482)
Q Consensus 101 --~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~---~~~~~~ 174 (482)
.-|+ + -+-.|+-+|+.+- ..++...+.....+...+..+++.+.+.|.+..|...++++. .++ +.
T Consensus 540 vncvPe-q-------ELlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpd-qy 610 (2799)
T KOG1788|consen 540 VNCVPE-Q-------ELLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPD-QY 610 (2799)
T ss_pred hccCcH-H-------HHHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcc-hh
Confidence 0111 1 1234555666543 445555666666666677788999999999999988885432 000 00
Q ss_pred HHHHHHHHhhcCCCCC-Chhh---hhhHHHHHHHHhccCC--hhH------HHHHHHHHHHhccCCcHHHHHHHHhCcHH
Q 043116 175 TATWTLSNFCRGKPQP-PFNQ---IRPALRVLAQLIRSND--EKV------LTDACRALAYLADGTNDKIQAVIEAGVCP 242 (482)
Q Consensus 175 ~a~~~L~~L~~~~~~~-~~~~---~~~~~~~L~~ll~~~~--~~~------~~~~l~~L~~l~~~~~~~~~~~~~~~~l~ 242 (482)
.-.+......+.. .+.. ....+-.--.+..+.. ..+ ....-.||..+..++.++...+.+..++.
T Consensus 611 ---sgvsehydrnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvk 687 (2799)
T KOG1788|consen 611 ---SGVSEHYDRNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVK 687 (2799)
T ss_pred ---hhHHHHhhcCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCce
Confidence 0011111111111 0000 0000000011122211 111 11123466667777777777777777777
Q ss_pred HHHHhhCCCChhhHHHHHHHHhHhhcCChh
Q 043116 243 RLVKLLGHRSRLVLTAALRTIGNIVTGDDF 272 (482)
Q Consensus 243 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 272 (482)
.+++++ -+++.|...++++..+....+.
T Consensus 688 lilpfl--indehRSslLrivscLitvdpk 715 (2799)
T KOG1788|consen 688 LILPFL--INDEHRSSLLRIVSCLITVDPK 715 (2799)
T ss_pred EEEEee--echHHHHHHHHHHHHHhccCcc
Confidence 777777 3445667777777777665554
No 300
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=84.71 E-value=28 Score=32.96 Aligned_cols=153 Identities=16% Similarity=0.070 Sum_probs=91.2
Q ss_pred HHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc----------cCChhHHHHHHHHHHHhccCC
Q 043116 159 PLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR----------SNDEKVLTDACRALAYLADGT 228 (482)
Q Consensus 159 ~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~----------~~~~~~~~~~l~~L~~l~~~~ 228 (482)
.++..+.+......+..++.++.-|+++............++.|+.+-. ..+..+...++.||+|+.-++
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S 128 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS 128 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence 4555553333344455666777777777655554445555555555532 234578999999999999888
Q ss_pred cHHHHHHHHhCcHHHHHHhhCCC----Ch-hhHHHHHHHHhHhhcC-ChhhHHHHHhcCchHHHHHHhcCCC--------
Q 043116 229 NDKIQAVIEAGVCPRLVKLLGHR----SR-LVLTAALRTIGNIVTG-DDFQTQCIINCGALRYLLGLLIHNH-------- 294 (482)
Q Consensus 229 ~~~~~~~~~~~~l~~L~~ll~~~----~~-~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~-------- 294 (482)
+...+...+......+.+.+... .+ .+...=++.|.-+..- .+...+.+.+.++++.+-+++.+.-
T Consensus 129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~ 208 (532)
T KOG4464|consen 129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINV 208 (532)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCC
Confidence 87777777776666666654321 11 1222223333333222 2444566677899999999986521
Q ss_pred ------chhHHHHHHHHHHHHhc
Q 043116 295 ------NKSIKKEVCWIISNITA 311 (482)
Q Consensus 295 ------~~~v~~~a~~~L~nl~~ 311 (482)
+.....++..++.|+..
T Consensus 209 ~~l~pqe~n~a~EaLK~~FNvt~ 231 (532)
T KOG4464|consen 209 PPLNPQETNRACEALKVFFNVTC 231 (532)
T ss_pred CCCCHHHHHHHHHHHHHHhheee
Confidence 12334566677777765
No 301
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=84.55 E-value=17 Score=28.19 Aligned_cols=72 Identities=15% Similarity=0.219 Sum_probs=53.2
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHc-CChHHHHhcCCCCCH--------HHHHHHHHHHHHHH
Q 043116 325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVRE-GCVKPLCDLLPCPDP--------QIVTVCLIGLENIL 395 (482)
Q Consensus 325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~-~~l~~L~~ll~~~~~--------~v~~~~l~~L~~l~ 395 (482)
++..|.+-|++.++.|+..++..|..++..|++.+...+... ..+..+.+.-..+++ .|+..|-+++.-++
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 556677777888899999999999999999998888776654 334445444442332 58888888888777
Q ss_pred H
Q 043116 396 K 396 (482)
Q Consensus 396 ~ 396 (482)
.
T Consensus 119 ~ 119 (122)
T cd03572 119 S 119 (122)
T ss_pred c
Confidence 4
No 302
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=84.44 E-value=15 Score=33.61 Aligned_cols=139 Identities=10% Similarity=0.123 Sum_probs=74.1
Q ss_pred CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhH-HHHHhcCchHHHHHHh----c-------CCCchhHHHHHHHHH
Q 043116 239 GVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQT-QCIINCGALRYLLGLL----I-------HNHNKSIKKEVCWII 306 (482)
Q Consensus 239 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~~l~~~~~i~~L~~ll----~-------~~~~~~v~~~a~~~L 306 (482)
-++|.++.++.+.++.++..++.+|..+....+... ..+...|..+.+.+.+ . ..++..+-..+.-++
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 357889999999999999999999999997555432 2355556554443333 2 122455666666666
Q ss_pred HHHhc-----C---CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC
Q 043116 307 SNITA-----G---NREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC 378 (482)
Q Consensus 307 ~nl~~-----~---~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~ 378 (482)
..++. + .......++..|++..+...-....+.++...+..+..+...-.....+.+.. .++.|.+.+.+
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~r--ii~~l~~~l~n 276 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQR--IIPVLSQILEN 276 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHH--HHHHHHHHhcC
Confidence 66643 1 11112223333333333222222245566555555555544322233333322 45555555444
Q ss_pred C
Q 043116 379 P 379 (482)
Q Consensus 379 ~ 379 (482)
+
T Consensus 277 p 277 (282)
T PF10521_consen 277 P 277 (282)
T ss_pred C
Confidence 3
No 303
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=84.36 E-value=42 Score=34.04 Aligned_cols=290 Identities=14% Similarity=0.161 Sum_probs=137.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHH
Q 043116 28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTK 107 (482)
Q Consensus 28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 107 (482)
++..+=+.+-++++.++.-|+..+.-..++..+++ .-.+-.|...+++++ ..++..|+.-|+-.-.++ +++
T Consensus 416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne~------dpalALLsdyv~~~~-s~~ri~aIlGLglayaGs--q~e 486 (878)
T KOG2005|consen 416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNEC------DPALALLSDYLQSSS-SIHRIGAILGLGLAYAGS--QRE 486 (878)
T ss_pred hHHHHHHHhhcCCchhhhccceeeeeecccccccc------CHHHHHHHHhccCCC-ceeehHHhhhhHHhhcCC--chH
Confidence 45555555556666666555544433333221111 112444556677777 677887777776554422 222
Q ss_pred HHHhCCChHHHHHhhCCCC--HHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhc
Q 043116 108 VAIDHGAVPIFVKLLASPS--DDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCR 185 (482)
Q Consensus 108 ~~~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~ 185 (482)
.+. ..|..++.+.+ .++...|...|+.+..+...- + + ...+++.++..-.........+.....|.-+..
T Consensus 487 ~V~-----~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~-d-v-ts~ilqtlmekse~El~d~~~RFL~LGL~llfl 558 (878)
T KOG2005|consen 487 EVL-----ELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNE-D-V-TSSILQTLMEKSETELEDQWFRFLALGLALLFL 558 (878)
T ss_pred HHH-----HHHhHHhcCCCCchhHHHHHHhhcceeEEecCCh-H-H-HHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHh
Confidence 222 25566666544 346666666777776443221 1 1 111233333332111122333333333443333
Q ss_pred CCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCC---hhhHHHHHHH
Q 043116 186 GKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRS---RLVLTAALRT 262 (482)
Q Consensus 186 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~---~~v~~~a~~~ 262 (482)
... ..+.....-+..-+..++..+-..+...+.......-.+-+ ..+..+-.... ...+..|+--
T Consensus 559 gkq--------e~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~----q~ll~~cgE~~~~~e~~~~~avLg 626 (878)
T KOG2005|consen 559 GKQ--------ESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQS----QLLLSFCGEHDADLESEQELAVLG 626 (878)
T ss_pred ccc--------chHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEech----hhhhhhcCCCccchhhhccchhhh
Confidence 321 11122222222222222222222221111111100000000 11112211111 1122234444
Q ss_pred HhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHH
Q 043116 263 IGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKK 342 (482)
Q Consensus 263 L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~ 342 (482)
++-++.+.+--.+. .+..+-.++..+ ++.+|+..-.+++-++..+|.. ++++.|-++..+.+.++..
T Consensus 627 iAliAMgeeig~eM-----~lR~f~h~l~yg-e~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~eva~ 693 (878)
T KOG2005|consen 627 IALIAMGEEIGSEM-----VLRHFGHLLHYG-EPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLEVAM 693 (878)
T ss_pred hhhhhhhhhhhhHH-----HHHHHHHHHHcC-CHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchHHHH
Confidence 44444433322222 345677788888 8889998888888887766662 4677777888888999999
Q ss_pred HHHHHHHHhhcCCCHHH
Q 043116 343 EAAWVISNATSGGTHEQ 359 (482)
Q Consensus 343 ~a~~aL~~l~~~~~~~~ 359 (482)
+++.+++-+-...+..+
T Consensus 694 naIfamGLiGAGTnNAR 710 (878)
T KOG2005|consen 694 NAIFAMGLIGAGTNNAR 710 (878)
T ss_pred HHHHHhccccCCcchHH
Confidence 99999887766544443
No 304
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=84.07 E-value=30 Score=30.72 Aligned_cols=129 Identities=14% Similarity=0.164 Sum_probs=69.4
Q ss_pred hCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCC-chhHHHHHHHHHHHHhcCCHHH
Q 043116 238 AGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNH-NKSIKKEVCWIISNITAGNREQ 316 (482)
Q Consensus 238 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~~v~~~a~~~L~nl~~~~~~~ 316 (482)
...++.++.+++.++.. .-..++......-...-..+-.|=++.|..++.++. +.-+|..|+.++..+....+..
T Consensus 72 ~~A~~~li~l~~~~~~~----~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~ 147 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDF----LEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPIS 147 (249)
T ss_pred hhhHHHHHHHHcCCcch----HHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCC
Confidence 35678899988765541 111222222111111111223356677778887764 5679999999999999865665
Q ss_pred HHHHHHcCChHHHHHH-HhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHH
Q 043116 317 IQAVIDAGLIGPIVNL-LQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPL 372 (482)
Q Consensus 317 ~~~l~~~~~i~~L~~l-l~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L 372 (482)
+..+++ .+..++.. +...+..+-..-+..++.+-...-...++.+.+.|.++..
T Consensus 148 Re~vi~--~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~~ 202 (249)
T PF06685_consen 148 REEVIQ--YFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDPS 202 (249)
T ss_pred HHHHHH--HHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCcc
Confidence 666555 45555544 3333333333333344444322223345556667776653
No 305
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=83.56 E-value=15 Score=33.57 Aligned_cols=79 Identities=15% Similarity=0.233 Sum_probs=62.8
Q ss_pred HcCChHHHHHHHhc--CChhHHHHHHHHHHHhhcCCCH-HHHHHHHHcCChHHHHhcCCCC---CHHHHHHHHHHHHHHH
Q 043116 322 DAGLIGPIVNLLQD--AEFGTKKEAAWVISNATSGGTH-EQIKHLVREGCVKPLCDLLPCP---DPQIVTVCLIGLENIL 395 (482)
Q Consensus 322 ~~~~i~~L~~ll~~--~~~~~~~~a~~aL~~l~~~~~~-~~~~~l~~~~~l~~L~~ll~~~---~~~v~~~~l~~L~~l~ 395 (482)
+.|.+..+++.+.. .+...+-..+.++..+....++ ....++.+.|.++.++..+-++ +..+.....+.|+.++
T Consensus 93 ~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELi 172 (303)
T PF12463_consen 93 KKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELI 172 (303)
T ss_pred cccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 36678888888774 3567788899999999998877 5667888999999999866544 3368899999999999
Q ss_pred Hhchh
Q 043116 396 KVGEA 400 (482)
Q Consensus 396 ~~~~~ 400 (482)
+....
T Consensus 173 K~n~~ 177 (303)
T PF12463_consen 173 KFNRD 177 (303)
T ss_pred CCCHH
Confidence 86544
No 306
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.49 E-value=93 Score=35.94 Aligned_cols=230 Identities=16% Similarity=0.083 Sum_probs=114.9
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHH
Q 043116 72 VPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSSRCRDF 150 (482)
Q Consensus 72 ~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~ 150 (482)
+..++..+..++ +..+-.+..+++.++..-++ ..++ .+..+.+++-+.+ .++..|.--.-+++.+-++.......
T Consensus 878 ~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~--~~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 878 LTLIVNSLINPN-PKLRCAAAEALARLAQVVGS--APFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHhhhhccCC-hHHHHHHHHHHHHHHHhccc--cchH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 444556666777 78888888888888762221 1111 1234455555554 44444443334444443221111000
Q ss_pred HHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCC---hhHHHH-----------
Q 043116 151 VLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSND---EKVLTD----------- 216 (482)
Q Consensus 151 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~---~~~~~~----------- 216 (482)
-.....+..++.+..++.++.++..++.++..+...............+..+..++-+.. .++...
T Consensus 954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence 001123556666665666778999999999988887633344445555555566554322 122211
Q ss_pred --HHHHHHHhccCCcH-HHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCC
Q 043116 217 --ACRALAYLADGTND-KIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHN 293 (482)
Q Consensus 217 --~l~~L~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~ 293 (482)
.+.+++.=...+.. ..-..+....+....-++.++++.++..++.++-++--..+.... -.-+++.+..++.+.
T Consensus 1034 ~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~s~ 1110 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLSSS 1110 (2067)
T ss_pred HHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhcch
Confidence 12222211111111 011122222333344445667888999999999888754443221 112455566666554
Q ss_pred CchhHHHHHHHHHHHH
Q 043116 294 HNKSIKKEVCWIISNI 309 (482)
Q Consensus 294 ~~~~v~~~a~~~L~nl 309 (482)
..-.|.....++..+
T Consensus 1111 -~~i~r~~~~~clrql 1125 (2067)
T KOG1822|consen 1111 -YLILRRASFSCLRQL 1125 (2067)
T ss_pred -hhhhhhhHHhhhhHH
Confidence 333434333333333
No 307
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.01 E-value=63 Score=33.61 Aligned_cols=319 Identities=11% Similarity=0.079 Sum_probs=172.4
Q ss_pred cHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHH--hcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChH
Q 043116 28 ILPTMVAGVWSD-DNKVQLEATTLFRKMLSFDRNSPIEKVI--QSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSE 104 (482)
Q Consensus 28 ~i~~l~~~l~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~ 104 (482)
....+.++++.. |.-++..++..+.-+...-+ -..+.+. -+.....+.++++.-..-+.+...+..++.+.....+
T Consensus 527 ~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~n-F~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e 605 (978)
T KOG1993|consen 527 LYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWN-FSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSE 605 (978)
T ss_pred HHHHHHHhcCccccceeehHHHHHHHHhhhhcc-CChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 456667777755 67777788888877776531 1112111 2344555556665433246677777777766543222
Q ss_pred hHHHHHhCCChHHHHHhhC---CCCHHHHHHHHHHHHHhhC----CChhhHHHHHHhCChHHHHHHHcchhhh---hHHH
Q 043116 105 NTKVAIDHGAVPIFVKLLA---SPSDDVREQAVWALGNVAG----DSSRCRDFVLSQGALIPLLAELNEHAKL---SMLR 174 (482)
Q Consensus 105 ~~~~~~~~g~i~~L~~ll~---~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~~i~~l~~~l~~~~~~---~~~~ 174 (482)
...-.. +-+-.++..+- .+.+-+|.+.+.++.|+.. .++.+.. ++-+++.+--+-+++ -..+
T Consensus 606 ~I~P~~--~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~------fL~pVIel~~D~~sP~hv~L~E 677 (978)
T KOG1993|consen 606 HIAPYA--STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYP------FLYPVIELSTDPSSPEHVYLLE 677 (978)
T ss_pred hhhHHH--HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchH------HHHHHHHHhcCCCCCceeehhh
Confidence 221111 11112222222 2445677777888888862 1111111 122333333222222 2333
Q ss_pred HHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhc-cCCcHHHHHHHHhCcHHHHHHhhCCCCh
Q 043116 175 TATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLA-DGTNDKIQAVIEAGVCPRLVKLLGHRSR 253 (482)
Q Consensus 175 ~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~-~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 253 (482)
.+.........+.+ .-....-+++|.+...+....+ ....++..+..-. -.++. .-.....|++..+..++.+-..
T Consensus 678 DgmeLW~~~L~n~~-~l~p~ll~L~p~l~~~iE~ste-~L~t~l~Ii~sYilLd~~~-fl~~y~~~i~k~~~~~l~dvr~ 754 (978)
T KOG1993|consen 678 DGMELWLTTLMNSQ-KLTPELLLLFPHLLYIIEQSTE-NLPTVLMIISSYILLDNTV-FLNDYAFGIFKKLNDLLDDVRN 754 (978)
T ss_pred hHHHHHHHHHhccc-ccCHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhccHH-HHHHHHHHHHHHHHHHHHHhhH
Confidence 44433333333322 2223345777888777764433 3333344333222 22222 2223344788888888877666
Q ss_pred hhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHh-cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHH
Q 043116 254 LVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLL-IHNHNKSIKKEVCWIISNITAGNREQIQAVID-AGLIGPIVN 331 (482)
Q Consensus 254 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ 331 (482)
+-....+.++..+...++ ........++++.+..-+ ...+.|.+...-..+++.++..+++....+++ ..-.+.++.
T Consensus 755 egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~ 833 (978)
T KOG1993|consen 755 EGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIA 833 (978)
T ss_pred HHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHH
Confidence 666777777777776555 334456667888776444 44447778888888888888877887766664 332333332
Q ss_pred --------HHh-cCChhHHHHHHHHHHHhhcCCCHHH
Q 043116 332 --------LLQ-DAEFGTKKEAAWVISNATSGGTHEQ 359 (482)
Q Consensus 332 --------ll~-~~~~~~~~~a~~aL~~l~~~~~~~~ 359 (482)
+.+ -.+++-|+--+-|+..+...+++.-
T Consensus 834 ~li~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~i 870 (978)
T KOG1993|consen 834 MLIGNWILLFDHINHPKDRKLNTLALSSLLRTNNPDI 870 (978)
T ss_pred HHHHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcHH
Confidence 222 2467888888888888887655543
No 308
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=82.83 E-value=42 Score=33.65 Aligned_cols=215 Identities=10% Similarity=-0.033 Sum_probs=116.0
Q ss_pred hhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc-----------cCChhHHHHHHHHHHHhccCCcHHHHHHHH
Q 043116 169 KLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR-----------SNDEKVLTDACRALAYLADGTNDKIQAVIE 237 (482)
Q Consensus 169 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~-----------~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~ 237 (482)
+.++...+-..|..+... .....++..|..+.. .-++.++...+..|+.-.... -..
T Consensus 250 ~~~V~~~ae~~LKr~~~~------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa------~~~ 317 (501)
T PF13001_consen 250 NSSVSDRAEDLLKRLSVS------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAA------TSF 317 (501)
T ss_pred cchHHHHHHHHHhhcCCC------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHH------hCC
Confidence 345555555566555543 112456666666655 234667777777666522100 011
Q ss_pred hCcHHHHHHhhCCC--ChhhHHHHHHHH---hHhhcCChhhHHHHHhcCchHHHHHHhc-------CCCchhHHHHHHHH
Q 043116 238 AGVCPRLVKLLGHR--SRLVLTAALRTI---GNIVTGDDFQTQCIINCGALRYLLGLLI-------HNHNKSIKKEVCWI 305 (482)
Q Consensus 238 ~~~l~~L~~ll~~~--~~~v~~~a~~~L---~~l~~~~~~~~~~l~~~~~i~~L~~ll~-------~~~~~~v~~~a~~~ 305 (482)
..++..+...+.+. +..++..++..+ .....+.....-..+...+...+...++ +..+...|..+-.+
T Consensus 318 ~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~ 397 (501)
T PF13001_consen 318 PNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYET 397 (501)
T ss_pred ccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHH
Confidence 12334444445555 566777777777 5555443322222222223333333342 12267899999999
Q ss_pred HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHH-HHHHHcCChHHHH-hcCCCCCHHH
Q 043116 306 ISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQI-KHLVREGCVKPLC-DLLPCPDPQI 383 (482)
Q Consensus 306 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~-~~l~~~~~l~~L~-~ll~~~~~~v 383 (482)
|+.++...+..... +-+++..|++-+..++++++..+-.||..++..-....- ........+..+. ....+....+
T Consensus 398 lG~L~~~~p~l~~~--d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 475 (501)
T PF13001_consen 398 LGLLAKRAPSLFSK--DLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSC 475 (501)
T ss_pred HHHHHccCcccccc--cHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHH
Confidence 99999876664321 244788888888888999999988888888652111000 0000111122222 2223444567
Q ss_pred HHHHHHHHHHHHHh
Q 043116 384 VTVCLIGLENILKV 397 (482)
Q Consensus 384 ~~~~l~~L~~l~~~ 397 (482)
+..+++-...++-+
T Consensus 476 R~~avk~an~~fpf 489 (501)
T PF13001_consen 476 RYAAVKYANACFPF 489 (501)
T ss_pred HHHHHHHHHHhCCc
Confidence 77777777666644
No 309
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=82.79 E-value=17 Score=30.42 Aligned_cols=76 Identities=16% Similarity=0.259 Sum_probs=57.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh
Q 043116 28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN 105 (482)
Q Consensus 28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~ 105 (482)
-+|.+++.++..+...++.|...+..+......+..-.++ .-++..+-..|.+.+ +++...++.+|..++..++..
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~-~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRD-PEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHhhhhh
Confidence 4788999999877777888888888888773233333333 346777788889999 999999999999996644433
No 310
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=82.22 E-value=43 Score=31.19 Aligned_cols=181 Identities=11% Similarity=0.125 Sum_probs=105.6
Q ss_pred hhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHH-HhcC---C----CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 043116 254 LVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLG-LLIH---N----HNKSIKKEVCWIISNITAGNREQIQAVIDAGL 325 (482)
Q Consensus 254 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~-ll~~---~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 325 (482)
.+++..++.+.......++. .. +....++.++. +|.+ . .++++-.-.+.++..+-....+....+++ .+
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~-~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~-~v 118 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDP-EE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE-AV 118 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-H-HH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHhccCCH-HH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-HH
Confidence 46777777777777654432 22 33456666665 3321 2 13444444444444443322333444444 46
Q ss_pred hHHHHHHHhc---CChhHHHHHHHHHHHhhcCC-------CHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 043116 326 IGPIVNLLQD---AEFGTKKEAAWVISNATSGG-------THEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENIL 395 (482)
Q Consensus 326 i~~L~~ll~~---~~~~~~~~a~~aL~~l~~~~-------~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~ 395 (482)
+...+.++.. +-|+.+..-...|..+...+ +++..+. +++.+.-.++++++++...++.++..++
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~-----~idsi~wg~kh~~~~I~~~~L~~l~~ll 193 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKL-----VIDSIVWGFKHTNREISETGLNILLELL 193 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH-----HHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 6677777763 35788877777777776532 2222222 5667777789999999999999999999
Q ss_pred HhchhccccCCCCcccHHHHHHHHhchHHHHHHh----hcCCCHHHHHHHHHHHHHhcC
Q 043116 396 KVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENL----QSHDNNDIHEMSVKILETYWC 450 (482)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l----~~~~~~~v~~~a~~~l~~~~~ 450 (482)
...... ...+...|-+.-.++.+.++ .++......+.-..++..+|.
T Consensus 194 ~~~~~~--------~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~ 244 (319)
T PF08767_consen 194 NNVSKT--------NPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFR 244 (319)
T ss_dssp HHHHH---------SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHH
T ss_pred HHHHhc--------CHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence 877661 12245555555555555555 345555566666688888874
No 311
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=82.03 E-value=63 Score=38.66 Aligned_cols=252 Identities=14% Similarity=0.089 Sum_probs=140.7
Q ss_pred HHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCC----CCh--hhhhhHHHHHH
Q 043116 130 REQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQ----PPF--NQIRPALRVLA 203 (482)
Q Consensus 130 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~----~~~--~~~~~~~~~L~ 203 (482)
...|.++++++-........ .+...+.......+.+++..+..++..+....+. ... ..+...+..+.
T Consensus 461 ~~~a~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll 534 (2341)
T KOG0891|consen 461 IQLAFKTLGGFKFSGYSLTL------FVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALL 534 (2341)
T ss_pred HHHHHHHHhhhhhhhhhHHH------HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHH
Confidence 34466777766432221111 2233233332566777888876666666555422 111 12455555555
Q ss_pred HH-hccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCc
Q 043116 204 QL-IRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGA 282 (482)
Q Consensus 204 ~l-l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~ 282 (482)
.+ +..+++.++......+. ........+.+.+..+...+.+..-.++..+...+++++..++.....-+....
T Consensus 535 ~~aia~~~~~i~~~v~~~l~------~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~ 608 (2341)
T KOG0891|consen 535 TVAIADTDPDIRIRVLSSLN------ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTL 608 (2341)
T ss_pred HHhccCCCcchhhhHHhhhc------cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHH
Confidence 55 34567777777766654 122233555566677777788888889999999999999988855443333333
Q ss_pred hHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHH
Q 043116 283 LRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKH 362 (482)
Q Consensus 283 i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~ 362 (482)
+..+-.+-.+. -..++...+.-+..+....+..+...++ ..+..++..+.+.+..+...+..++..|+..+..+. ..
T Consensus 609 l~~~s~l~~sg-~~r~~~~~a~~~~~~i~~~~~~i~~~v~-~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~-~~ 685 (2341)
T KOG0891|consen 609 LELLTELEFSG-MARTKEESAKLLCELIISSPVLISPYVG-PILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEM-VK 685 (2341)
T ss_pred HHHhchhhhcc-hHHhHHHHHHHhhHHHHHHHHHHHhhcC-chHHHHHHHHhccchhhHHHHHHHHHHHHHhccchh-hh
Confidence 33333333333 3333344443343333344443433333 345666667777888888899999999987654222 11
Q ss_pred HHHcCChHHHHhcCCC-CCHHHHHHHHHHHHHHHHh
Q 043116 363 LVREGCVKPLCDLLPC-PDPQIVTVCLIGLENILKV 397 (482)
Q Consensus 363 l~~~~~l~~L~~ll~~-~~~~v~~~~l~~L~~l~~~ 397 (482)
..+ ..+..+.+.+.. .+..-+..+++.+.++...
T Consensus 686 ~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~ 720 (2341)
T KOG0891|consen 686 WVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESS 720 (2341)
T ss_pred ccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence 122 344444444433 3334555666777776653
No 312
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=81.62 E-value=17 Score=29.09 Aligned_cols=74 Identities=11% Similarity=0.084 Sum_probs=58.0
Q ss_pred ChHHHHHHHh-cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHH-HHhcCCC---CCHHHHHHHHHHHHHHHHhc
Q 043116 325 LIGPIVNLLQ-DAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKP-LCDLLPC---PDPQIVTVCLIGLENILKVG 398 (482)
Q Consensus 325 ~i~~L~~ll~-~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~-L~~ll~~---~~~~v~~~~l~~L~~l~~~~ 398 (482)
.+..|..-+. +.++.++..|+..|-.++.++.......+...+++.. |+.++.. .+..|+.+++..+.......
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 3444555555 4688899999999999999998888888888899987 8888863 34589999998888887543
No 313
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=79.89 E-value=12 Score=33.86 Aligned_cols=81 Identities=16% Similarity=0.195 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHHHHHhchhccccC----CCCcccHHHHHHHHhchHHHHHHhhcCCC-HHHHHHHHHHHHHhcCCCCC
Q 043116 380 DPQIVTVCLIGLENILKVGEAEKNTD----NIGDVNQYAQLVEEAEGLEKIENLQSHDN-NDIHEMSVKILETYWCGRVV 454 (482)
Q Consensus 380 ~~~v~~~~l~~L~~l~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~l~~l~~~~~-~~v~~~a~~~l~~~~~~~~~ 454 (482)
+..+.+.++..+.|++...+...... .....+.+...|.++|.++.|..+..+.+ .+-......++.-+|.+..+
T Consensus 133 d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~~p 212 (266)
T PF04821_consen 133 DNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQDP 212 (266)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCCCH
Confidence 44689999999999998744322110 01124567788889999999999988763 33335777888888888766
Q ss_pred CCCCCC
Q 043116 455 GPQPGL 460 (482)
Q Consensus 455 ~~~~~~ 460 (482)
..+...
T Consensus 213 ~~L~~~ 218 (266)
T PF04821_consen 213 ESLASA 218 (266)
T ss_pred HHHhhc
Confidence 544333
No 314
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=79.82 E-value=2.4 Score=33.94 Aligned_cols=74 Identities=15% Similarity=0.115 Sum_probs=57.0
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChH---HHHHHHHHHHHHhC
Q 043116 27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQ---LQFEAARALTNIAS 100 (482)
Q Consensus 27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~---v~~~a~~~L~~l~~ 100 (482)
.++..|.+.|++.++.++..|+..|-.+....+.....++....++..|..++.+..... |+..++..+...+.
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 367888888999999999999999998888764444566667778888999887554333 88888877776654
No 315
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=79.11 E-value=28 Score=34.41 Aligned_cols=112 Identities=7% Similarity=0.115 Sum_probs=73.0
Q ss_pred CcHHHHHHhhCCCChhhHHHHHHHHhHhhcC---ChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCC--
Q 043116 239 GVCPRLVKLLGHRSRLVLTAALRTIGNIVTG---DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGN-- 313 (482)
Q Consensus 239 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~-- 313 (482)
++++.+++.+. .+.+..--+++++ +.. .......+.+.++++.|+.+|....++.++..|+.+|+.++.-+
T Consensus 21 ~~v~~llkHI~--~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n 96 (475)
T PF04499_consen 21 NFVDNLLKHID--TPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRN 96 (475)
T ss_pred cHHHHHHHhcC--CcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 56666666653 3334444444444 221 12444556678999999999987668889999999988887511
Q ss_pred -----------HHHHHHHHHcCChHHHHHHHhc-CChhHHHHHHHHHHHhhcC
Q 043116 314 -----------REQIQAVIDAGLIGPIVNLLQD-AEFGTKKEAAWVISNATSG 354 (482)
Q Consensus 314 -----------~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~a~~aL~~l~~~ 354 (482)
....+.+.....+..|++.+-. ........++..+..+...
T Consensus 97 ~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRk 149 (475)
T PF04499_consen 97 APQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRK 149 (475)
T ss_pred cccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHh
Confidence 2334566667788888887763 3355666677777777654
No 316
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=78.85 E-value=24 Score=26.13 Aligned_cols=93 Identities=14% Similarity=0.161 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHH-hcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHH
Q 043116 42 KVQLEATTLFRKMLSFDRNSPIEKVI-QSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVK 120 (482)
Q Consensus 42 ~~~~~a~~~L~~l~~~~~~~~~~~~~-~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 120 (482)
+++..|+..+..=..+. --....+. ...++..|++-+..+. ...+..++..+..+.. +|.....+.+.|....|.+
T Consensus 2 EIR~RAL~~I~~Kl~~~-Li~~~dl~~~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~k 78 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHG-LISEEDLVKERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSK 78 (98)
T ss_pred hHHHHHHHHHHHHHHhc-cccHHHHccHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHH
Confidence 45666666554333332 22233333 5567777888888887 5688889999999987 7777888888898888777
Q ss_pred hhCCCCHHHHHHHHHHH
Q 043116 121 LLASPSDDVREQAVWAL 137 (482)
Q Consensus 121 ll~~~~~~~~~~a~~~L 137 (482)
+=...++..+...-..+
T Consensus 79 lr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 79 LRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHhcCCHHHHHHHHHHH
Confidence 77666676665544443
No 317
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=78.47 E-value=21 Score=35.27 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=58.5
Q ss_pred HHHHHHHHcCChHHHHHHHh-cCChhHHHHHHHHHHHhhcCC------------CHHHHHHHHHcCChHHHHhcCCC-CC
Q 043116 315 EQIQAVIDAGLIGPIVNLLQ-DAEFGTKKEAAWVISNATSGG------------THEQIKHLVREGCVKPLCDLLPC-PD 380 (482)
Q Consensus 315 ~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~a~~aL~~l~~~~------------~~~~~~~l~~~~~l~~L~~ll~~-~~ 380 (482)
..++.+.+.++++.|++.|. +.+++++.+|+..|+.+...+ .......+.....+..|++.+-. ..
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~ 132 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQG 132 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCC
Confidence 44455667899999999997 457788999998888885532 23456667777788888775432 33
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 043116 381 PQIVTVCLIGLENILKVG 398 (482)
Q Consensus 381 ~~v~~~~l~~L~~l~~~~ 398 (482)
......++.++..+++..
T Consensus 133 ~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 133 GSSLVNGVSILIELIRKN 150 (475)
T ss_pred cchHHHHHHHHHHHHHhc
Confidence 455566777777777654
No 318
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=77.31 E-value=3 Score=38.65 Aligned_cols=102 Identities=16% Similarity=0.180 Sum_probs=75.1
Q ss_pred CChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhc-CCCHHHHHHHHHHH
Q 043116 367 GCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQS-HDNNDIHEMSVKIL 445 (482)
Q Consensus 367 ~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~-~~~~~v~~~a~~~l 445 (482)
.++..|..-+.+.++.|...++..+..+...|.+. |+..+..-++..-|..+.. +..+.|.++...++
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~-----------~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv 113 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKR-----------FRLEVSSRDFTTELRALIESKAHPKVCEKMRDLV 113 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchH-----------HHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 37888889999999999999999999998877663 5666666677888888877 67788888888887
Q ss_pred HHhcCCCCCCCCCCCccCCCCCCcccCCccccCC
Q 043116 446 ETYWCGRVVGPQPGLTYAGNEGEDALGSNVIANG 479 (482)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (482)
....++-..||..+|-..--..++..++--++-|
T Consensus 114 ~eWsee~K~Dp~lsLi~~l~~klk~~g~~f~~~~ 147 (462)
T KOG2199|consen 114 KEWSEEFKKDPSLSLISALYKKLKEEGITFLVAG 147 (462)
T ss_pred HHHHHHhccCcchhHHHHHHHHHHHcCCCcccCC
Confidence 7776655566666665554444555554444444
No 319
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=77.24 E-value=88 Score=33.15 Aligned_cols=142 Identities=16% Similarity=0.164 Sum_probs=83.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHH
Q 043116 31 TMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAI 110 (482)
Q Consensus 31 ~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 110 (482)
.+.+.+.++++..-...+.++..+..-..-.... ...-++.-..-....- ..+......+|.+++.-+++....+.
T Consensus 445 ~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~-~~~~~~~~~il~rls~~~~~~L~~l~ 520 (727)
T PF12726_consen 445 ALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSL-GQITDLISQILERLSDFDPSHLKELL 520 (727)
T ss_pred HHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3344445566665555666666665443111111 1111111122222222 45677788999999998777776665
Q ss_pred -hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC
Q 043116 111 -DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK 187 (482)
Q Consensus 111 -~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~ 187 (482)
+.+....++.++-+++.++.+.|...|...+... .|. ..+-.++ +..-........+.+..+....
T Consensus 521 ~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~--~R~--------e~i~~ll-~~~~~~tL~ai~~~l~~~~~~~ 587 (727)
T PF12726_consen 521 SDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVD--GRL--------EAIQALL-QSNFSPTLSAINWSLRQLTKLK 587 (727)
T ss_pred cCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCC--cHH--------HHHHHHH-HHhHHHHHHHHHHHHHHHHhhh
Confidence 5678899999999999999999999999998422 221 1222233 2223345556666777666654
No 320
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=76.75 E-value=2.1e+02 Score=35.78 Aligned_cols=302 Identities=12% Similarity=0.037 Sum_probs=137.3
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCC------h--HhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 043116 70 GVVPRFVEFLMREDYPQLQFEAARALTNIASGT------S--ENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVA 141 (482)
Q Consensus 70 g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~------~--~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 141 (482)
-.++.++..+...+ +++...+..++..+.... + ..+-.+. .++++.+.++..++...-+...+-.|..++
T Consensus 984 i~ldal~~~l~~~~-~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~-~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~ 1061 (3550)
T KOG0889|consen 984 TFLDALVESLSHEN-SEMRPAGVRALKVIFSTSTLILGSPERAFKLPMF-EYLLEKLCHLCYDSTWYAKDGGVNGIKCLI 1061 (3550)
T ss_pred HHHHHHHHHHhccc-hhhhhhHHHHHHHHHHHHHHhhcCcchhhccchH-HHHHHHHHHHhccHhHHHHcCCCceeeeeh
Confidence 35677788888777 677777776666654311 0 0111111 133444555555544444444444555555
Q ss_pred CCChhhHHHHH--HhCChHHHHHHHcchhh------hhHHHHHH-HHHHHhhcCC--CCCChhhhhhHHHHHHHHhccCC
Q 043116 142 GDSSRCRDFVL--SQGALIPLLAELNEHAK------LSMLRTAT-WTLSNFCRGK--PQPPFNQIRPALRVLAQLIRSND 210 (482)
Q Consensus 142 ~~~~~~~~~~~--~~~~i~~l~~~l~~~~~------~~~~~~a~-~~L~~L~~~~--~~~~~~~~~~~~~~L~~ll~~~~ 210 (482)
.+.+. ..+. ...++..++..+.+... .......+ ..+.....+. +........+++..++.-+.+++
T Consensus 1062 ~~~~~--~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN 1139 (3550)
T KOG0889|consen 1062 ESMPS--LWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPN 1139 (3550)
T ss_pred hhchH--HHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCc
Confidence 44431 1111 12345556655533221 11111122 2222222211 22233344677778888888889
Q ss_pred hhHHHHHHHHHHHhccCCcHHHHHHHHh--CcH--HHHHHhhCCCChhhHHHHHHHHhHhhcCCh-------hhHHHH--
Q 043116 211 EKVLTDACRALAYLADGTNDKIQAVIEA--GVC--PRLVKLLGHRSRLVLTAALRTIGNIVTGDD-------FQTQCI-- 277 (482)
Q Consensus 211 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~--~~l--~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-------~~~~~l-- 277 (482)
+.++..+..+|.+++.........+++. .++ +.+..-+....-.++.-.+..+..+..-.+ ......
T Consensus 1140 ~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~ 1219 (3550)
T KOG0889|consen 1140 SDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRF 1219 (3550)
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHH
Confidence 9999999999999886542222222221 111 111111111122222222222222222111 111100
Q ss_pred Hh-------cCchHHHHHHhcCCC---chhHHHHHHHHHHHHhcCCHHHHH--HHHHcCChHHHHHHHhcCChhHHHHHH
Q 043116 278 IN-------CGALRYLLGLLIHNH---NKSIKKEVCWIISNITAGNREQIQ--AVIDAGLIGPIVNLLQDAEFGTKKEAA 345 (482)
Q Consensus 278 ~~-------~~~i~~L~~ll~~~~---~~~v~~~a~~~L~nl~~~~~~~~~--~l~~~~~i~~L~~ll~~~~~~~~~~a~ 345 (482)
.. ....- +.+...... ....|..+..+++..+...+.... .-...+++..+...+....+++...+.
T Consensus 1220 ~~~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~ 1298 (3550)
T KOG0889|consen 1220 LIALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVAL 1298 (3550)
T ss_pred HHHhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHH
Confidence 00 00011 222222220 122355555555555542221111 112346788888888888999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC
Q 043116 346 WVISNATSGGTHEQIKHLVREGCVKPLCDLLPC 378 (482)
Q Consensus 346 ~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~ 378 (482)
.++...... +...-+..++.+ +.+|...+.+
T Consensus 1299 ~~l~~v~~~-~~~~~ke~lq~~-lrplL~~l~d 1329 (3550)
T KOG0889|consen 1299 EGLRKVLAQ-DVKLPKELLQSH-LRPLLMNLSD 1329 (3550)
T ss_pred HHHHhhhhc-cccccHHHHHhh-HHHHHHhhhH
Confidence 988888763 222223333433 4444444443
No 321
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=76.48 E-value=20 Score=27.44 Aligned_cols=70 Identities=14% Similarity=0.232 Sum_probs=51.1
Q ss_pred ChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHh-----h-cCCCHHHHHHH
Q 043116 368 CVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENL-----Q-SHDNNDIHEMS 441 (482)
Q Consensus 368 ~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l-----~-~~~~~~v~~~a 441 (482)
++..|..-+.++++.++..++..|..+++.+... |...+.....+..+..+ . ...+..|++++
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~-----------f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~ 106 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER-----------FHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKA 106 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH-----------HHHHHHHhHHHHHHHHhhccccccCCCChHHHHHH
Confidence 5666777778889999999999999999877653 56666555555554332 1 23478999999
Q ss_pred HHHHHHh
Q 043116 442 VKILETY 448 (482)
Q Consensus 442 ~~~l~~~ 448 (482)
..+++..
T Consensus 107 ~~l~~~w 113 (115)
T cd00197 107 IELVQLW 113 (115)
T ss_pred HHHHHHH
Confidence 9988754
No 322
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=76.43 E-value=66 Score=29.97 Aligned_cols=181 Identities=10% Similarity=0.088 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcch--------hhhhHHHHHHHHHHHhhcCCCCCChhhhhhHH
Q 043116 128 DVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEH--------AKLSMLRTATWTLSNFCRGKPQPPFNQIRPAL 199 (482)
Q Consensus 128 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--------~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~ 199 (482)
.++...+..+.......+.... +....+++++..+..+ .++++......++..+-..-......+...++
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~~--v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf 119 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPEE--VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVF 119 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHH--HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 4566677777777644443222 3344788877744221 23455555555555554443444455567888
Q ss_pred HHHHHHhccC---ChhHHHHHHHHHHHhccCCcHHHHHHHH---hCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC----
Q 043116 200 RVLAQLIRSN---DEKVLTDACRALAYLADGTNDKIQAVIE---AGVCPRLVKLLGHRSRLVLTAALRTIGNIVTG---- 269 (482)
Q Consensus 200 ~~L~~ll~~~---~~~~~~~~l~~L~~l~~~~~~~~~~~~~---~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~---- 269 (482)
...+.++..+ -|+.+..-...|..+........-.+-. ..++..++-.+++++.++...++.++..+...
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~ 199 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKT 199 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888753 4888888888888777543221111100 13456777778999999999999999888753
Q ss_pred ChhhHHHHHhcC---chHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 043116 270 DDFQTQCIINCG---ALRYLLGLLIHNHNKSIKKEVCWIISNIT 310 (482)
Q Consensus 270 ~~~~~~~l~~~~---~i~~L~~ll~~~~~~~v~~~a~~~L~nl~ 310 (482)
+++....+.+.- ++..+..++.++.+...-+.-+.+|.++.
T Consensus 200 ~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf 243 (319)
T PF08767_consen 200 NPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLF 243 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 234444444443 33444444444434433444445555554
No 323
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=75.82 E-value=97 Score=31.56 Aligned_cols=160 Identities=15% Similarity=0.148 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHHHhCCChHhHHHHH---hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHH
Q 043116 85 PQLQFEAARALTNIASGTSENTKVAI---DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLL 161 (482)
Q Consensus 85 ~~v~~~a~~~L~~l~~~~~~~~~~~~---~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~ 161 (482)
.+.+.-|+.+|.-+..+.+.+...+. ...++..++..+. .++..+..++++|.|+..+ +..++.+... ...++
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~ 633 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR--LESIL 633 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHh
Confidence 46667777777766664443332222 1234445555554 5577778899999999866 5555555443 33333
Q ss_pred HHHc---chhhhhHHHHHHHHHHHhhcC--CCCCChhhhhhHHHHHHHHhcc-CChhHHHHHHHHHHHhccCCcHHHHHH
Q 043116 162 AELN---EHAKLSMLRTATWTLSNFCRG--KPQPPFNQIRPALRVLAQLIRS-NDEKVLTDACRALAYLADGTNDKIQAV 235 (482)
Q Consensus 162 ~~l~---~~~~~~~~~~a~~~L~~L~~~--~~~~~~~~~~~~~~~L~~ll~~-~~~~~~~~~l~~L~~l~~~~~~~~~~~ 235 (482)
..+. ...+..++........|++-. ....+....+-+...+..++.. ++-+.....+.+|++++..+.... .+
T Consensus 634 ~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~-~~ 712 (745)
T KOG0301|consen 634 DPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVI-QL 712 (745)
T ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHH-HH
Confidence 3321 122334444433333333321 1111111122222222222221 233455667778888886654333 34
Q ss_pred HHhCcHHHHHHhhC
Q 043116 236 IEAGVCPRLVKLLG 249 (482)
Q Consensus 236 ~~~~~l~~L~~ll~ 249 (482)
.+.--+..++.-++
T Consensus 713 A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 713 AKNRSVDSIAKKLK 726 (745)
T ss_pred HHhcCHHHHHHHHH
Confidence 44334455555553
No 324
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=74.46 E-value=13 Score=34.72 Aligned_cols=74 Identities=8% Similarity=0.023 Sum_probs=62.7
Q ss_pred CChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCC-CCCHHHHHHHHHHHHHHHHh
Q 043116 324 GLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP-CPDPQIVTVCLIGLENILKV 397 (482)
Q Consensus 324 ~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~l~~L~~l~~~ 397 (482)
.++..+++-+...++.|...|+..+..++.++.......+....+...|..++. ...++|+++.-..+....+.
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee 119 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEE 119 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Confidence 367778888899999999999999999999988888888888899999999888 67788888877777776653
No 325
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=73.18 E-value=97 Score=30.36 Aligned_cols=264 Identities=11% Similarity=0.072 Sum_probs=126.2
Q ss_pred CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC----CCCChhhhhhHHH
Q 043116 125 PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK----PQPPFNQIRPALR 200 (482)
Q Consensus 125 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~----~~~~~~~~~~~~~ 200 (482)
+|+-+-...++++..+-..-......+.+. .+..+....++..++..-.....+++.+.+.. +.........++|
T Consensus 42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P 120 (435)
T PF03378_consen 42 ENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP 120 (435)
T ss_dssp C-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence 456566666666665554433333333332 23333333333345555444555555544432 2223345578899
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChh---hHHHHHHHHhHhhcCChhhHHHH
Q 043116 201 VLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRL---VLTAALRTIGNIVTGDDFQTQCI 277 (482)
Q Consensus 201 ~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~---v~~~a~~~L~~l~~~~~~~~~~l 277 (482)
.+..+|+.+-.+..-++...++.+.+..+. ..+ .......+-.++...-++ -.-...+.|..+....+...
T Consensus 121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~--~~~-p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i--- 194 (435)
T PF03378_consen 121 PFQEILQQDVQEFIPYVFQILAQLLELRPS--SPL-PDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFI--- 194 (435)
T ss_dssp HHHHHHHTT-TTTHHHHHHHHHHHHHHSS----S---TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCC-cHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhh---
Confidence 999999988788888888888888754430 001 111222222233222111 22334445555554333322
Q ss_pred HhcC----chHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHh-cCChhHHHHHHHHHHHh
Q 043116 278 INCG----ALRYLLGLLIHNHNKSIKKEVCWIISNITAG-NREQIQAVIDAGLIGPIVNLLQ-DAEFGTKKEAAWVISNA 351 (482)
Q Consensus 278 ~~~~----~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~a~~aL~~l 351 (482)
...+ ++..+-+++.+. .. -..+...|..+... ..+.....+. .++..++.-++ +..+...+..+..++.+
T Consensus 195 ~~~~~l~~iLgvFQkLi~sk-~~--D~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~kf~~~fv~F~~~~ 270 (435)
T PF03378_consen 195 VANNQLEPILGVFQKLIASK-AN--DHYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTEKFVKRFVVFLSLF 270 (435)
T ss_dssp ---S-CHHHHHHHHHHHT-T-TC--HHHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHCCC-Cc--chHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcHHHHHHHHHHHHHH
Confidence 2222 333344566655 22 24567777777763 3333444443 35666666666 45566666666666666
Q ss_pred hcCCCHHHHHHHHHc---CChHHHHhcC------CCCCHHHHHHHHHHHHHHHHhch
Q 043116 352 TSGGTHEQIKHLVRE---GCVKPLCDLL------PCPDPQIVTVCLIGLENILKVGE 399 (482)
Q Consensus 352 ~~~~~~~~~~~l~~~---~~l~~L~~ll------~~~~~~v~~~~l~~L~~l~~~~~ 399 (482)
+....++..-..++. |....+.+-+ +-..+.-++.|.-++.+++..++
T Consensus 271 ~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es~ 327 (435)
T PF03378_consen 271 AIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCESP 327 (435)
T ss_dssp HHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSST
T ss_pred HHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhccH
Confidence 554455554444442 4444443321 12334446667778888875443
No 326
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=72.83 E-value=1.2e+02 Score=31.23 Aligned_cols=76 Identities=18% Similarity=0.122 Sum_probs=54.3
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHHhhcCC--CHHHHHHH--HHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhc
Q 043116 326 IGPIVNLLQDAEFGTKKEAAWVISNATSGG--THEQIKHL--VREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAE 401 (482)
Q Consensus 326 i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~--~~~~~~~l--~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~ 401 (482)
+..+..++++++.-+|...+.+.+|++..- +++..... .-+..+..+.+-+.+.+|.++.+++..+.+++......
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 456777888999999999999999987631 11111100 01235677777788899999999999999999865543
No 327
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=72.68 E-value=21 Score=27.28 Aligned_cols=70 Identities=6% Similarity=-0.011 Sum_probs=53.2
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhc-----C-CCCCHHHHHHHHHHHHHH
Q 043116 325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDL-----L-PCPDPQIVTVCLIGLENI 394 (482)
Q Consensus 325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~l-----l-~~~~~~v~~~~l~~L~~l 394 (482)
++..|..-+.+.++.++..|+..|-.++.++.+.....+....++..++.. . ...+..|+.++...+...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 455666667788999999999999999999998888888777766666543 1 123567888888777654
No 328
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.66 E-value=1.5e+02 Score=32.29 Aligned_cols=78 Identities=15% Similarity=0.156 Sum_probs=58.6
Q ss_pred HHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCC---CCCHHHHHHHHHHHHH
Q 043116 317 IQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP---CPDPQIVTVCLIGLEN 393 (482)
Q Consensus 317 ~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~---~~~~~v~~~~l~~L~~ 393 (482)
.+.+...|++..+++.+-...+.++.+-+..+..++.. ++.+...+...|+++.|.+... ++.......++.++.-
T Consensus 901 k~~iynagavRvlirslLlnypK~qlefl~lleSlaRa-spfnaelltS~gcvellleIiypflsgsspfLshalkIvem 979 (2799)
T KOG1788|consen 901 KQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARA-SPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEM 979 (2799)
T ss_pred HhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhc-CCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHH
Confidence 45677889999999998888889999999999999875 6677777777899999888765 3444455555555544
Q ss_pred HH
Q 043116 394 IL 395 (482)
Q Consensus 394 l~ 395 (482)
+.
T Consensus 980 Lg 981 (2799)
T KOG1788|consen 980 LG 981 (2799)
T ss_pred Hh
Confidence 43
No 329
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=72.41 E-value=9.1 Score=27.55 Aligned_cols=71 Identities=10% Similarity=0.134 Sum_probs=45.9
Q ss_pred HHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHH
Q 043116 152 LSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALA 222 (482)
Q Consensus 152 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~ 222 (482)
.+..++.++..++....+.+++...+.++.++.......-..-...++..+.....++++++...+..++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 34456778888886777889999999999999876532222222344444444445566777776666553
No 330
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=72.14 E-value=3.4 Score=33.12 Aligned_cols=125 Identities=11% Similarity=0.104 Sum_probs=89.3
Q ss_pred ChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCChHHHHHHH-hcCChhHHHHHHH
Q 043116 270 DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA--GNREQIQAVIDAGLIGPIVNLL-QDAEFGTKKEAAW 346 (482)
Q Consensus 270 ~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll-~~~~~~~~~~a~~ 346 (482)
++...+.+.+.+++..++++++......++.....+++-+.. .++..+.+++..+.+..++..- +-.+.++...=+.
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 456677888999999999999985477899888888888876 4566666777778888777653 3457888888888
Q ss_pred HHHHhhcCCCHHHHHHHHHc--CChHHHHh---cCCCCCHHHHHHHHHHHHHH
Q 043116 347 VISNATSGGTHEQIKHLVRE--GCVKPLCD---LLPCPDPQIVTVCLIGLENI 394 (482)
Q Consensus 347 aL~~l~~~~~~~~~~~l~~~--~~l~~L~~---ll~~~~~~v~~~~l~~L~~l 394 (482)
.|..++..-+++....+... +-.|.+.+ ...++|+-++.++-.+.-++
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 88888876666655555542 45555544 44577776776655554444
No 331
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=72.04 E-value=86 Score=34.60 Aligned_cols=232 Identities=15% Similarity=0.154 Sum_probs=126.6
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh-hHHHHHHhCChHHHHHHHc-c--------hhhhhHHHHHHHHHHH
Q 043116 113 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR-CRDFVLSQGALIPLLAELN-E--------HAKLSMLRTATWTLSN 182 (482)
Q Consensus 113 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~l~~~l~-~--------~~~~~~~~~a~~~L~~ 182 (482)
+.+..|+..+-++..++|+-+.-++..+...... .-....+. .+..++..+. + .--..+++.++|+|..
T Consensus 77 s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led-~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~ 155 (1549)
T KOG0392|consen 77 SFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLED-LLIRLLCVLALDRFGDFISDNVVAPVREACAQALGA 155 (1549)
T ss_pred HHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHH-HHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHH
Confidence 3456677777778888888777777777632211 11111111 1111111110 1 1113678889999998
Q ss_pred hhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHH
Q 043116 183 FCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRT 262 (482)
Q Consensus 183 L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~ 262 (482)
+...- ........+..+.+++..++++++.-.+..+.+......+....+ -..+++.....+.+.+..++..|...
T Consensus 156 ~l~~~---~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~-~~~vl~~~i~~L~ds~ddv~~~aa~~ 231 (1549)
T KOG0392|consen 156 YLKHM---DESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQL-LNLVLDFVIEGLEDSDDDVRSVAAQF 231 (1549)
T ss_pred HHHhh---hhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhcchHHHHHHHHH
Confidence 88763 333446777888888888888888777776665443211111111 11355667777888888899999888
Q ss_pred HhHhhcCChhh-HHHHHhcCchHHHHHHhcCCCchhHH---HHHHHHHHHHhcCCHHHHHHHH-----HcCChHHHHHHH
Q 043116 263 IGNIVTGDDFQ-TQCIINCGALRYLLGLLIHNHNKSIK---KEVCWIISNITAGNREQIQAVI-----DAGLIGPIVNLL 333 (482)
Q Consensus 263 L~~l~~~~~~~-~~~l~~~~~i~~L~~ll~~~~~~~v~---~~a~~~L~nl~~~~~~~~~~l~-----~~~~i~~L~~ll 333 (482)
+.-.+...... .+.+. .++..+...+..- +. .- ......+..++.. .+ ...+. +.|++|.+...+
T Consensus 232 l~~~~s~~v~l~~~~i~--~lv~~l~~~l~~l-dd-l~~s~~si~~ll~~l~~~-~e-vl~l~~~~n~~~~Lvp~~~p~l 305 (1549)
T KOG0392|consen 232 LVPAPSIQVKLMVQKIA--KLVHTLWSFLLEL-DD-LSSSTASIMHLLDELCIE-NE-VLDLFEQQNLEVGLVPRLWPFL 305 (1549)
T ss_pred hhhhhHHHHhhhHhHHH--HHHHHHHHHHHHh-hh-cchhhHHHHHHHHHHhhh-HH-HHHHHHHhhhhhccchhhHHHH
Confidence 87766533111 11111 2233333333222 11 11 1111122222221 11 22222 257888888888
Q ss_pred hcCChhHHHHHHHHHHHhhcCC
Q 043116 334 QDAEFGTKKEAAWVISNATSGG 355 (482)
Q Consensus 334 ~~~~~~~~~~a~~aL~~l~~~~ 355 (482)
.+.=..++..++..+..+....
T Consensus 306 ~~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 306 RHTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 8777778888888888887643
No 332
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=72.01 E-value=41 Score=27.79 Aligned_cols=109 Identities=14% Similarity=0.159 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHhcCCC-----CC---cHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHH-h
Q 043116 41 NKVQLEATTLFRKMLSFDR-----NS---PIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAI-D 111 (482)
Q Consensus 41 ~~~~~~a~~~L~~l~~~~~-----~~---~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~ 111 (482)
...+..+++.+..+....+ .+ ....++...+.+.+.+.+.+++ +.+-..+++++..+.. ..+..+. +
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~---~~~~~Lk~e 111 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLS---RFRSHLKLE 111 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 3556667777777766532 11 3455567788899999988888 8999999999999975 3333332 2
Q ss_pred CC-ChHHHHH-hhCCCC--HHHHHHHHHHHHHhhCCChhhHHHHHH
Q 043116 112 HG-AVPIFVK-LLASPS--DDVREQAVWALGNVAGDSSRCRDFVLS 153 (482)
Q Consensus 112 ~g-~i~~L~~-ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~ 153 (482)
.+ .++.+.. ++.+++ ..-|+.++.++..++.++.-..+....
T Consensus 112 le~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~lf~N 157 (168)
T PF12783_consen 112 LEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDLFVN 157 (168)
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 22 2344444 666443 467888999999999765544444433
No 333
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=70.60 E-value=63 Score=27.12 Aligned_cols=72 Identities=8% Similarity=-0.019 Sum_probs=52.9
Q ss_pred CcHHHHHHhhCCCChhhHHHHHHHHhHhhcC-ChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 043116 239 GVCPRLVKLLGHRSRLVLTAALRTIGNIVTG-DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAG 312 (482)
Q Consensus 239 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~ 312 (482)
-.++.+..-|...+...+--|...+..+... ..+..-.++ ..++..+...|.+. ++++...+..+|..++..
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTR-DPEVFCATLKALQQLVTS 110 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 4567777777777777777777777777665 333333233 35788888899999 999999999999999653
No 334
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=70.50 E-value=27 Score=34.17 Aligned_cols=57 Identities=19% Similarity=0.306 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCC
Q 043116 41 NKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGT 102 (482)
Q Consensus 41 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~ 102 (482)
...+..|+.+|..+++.-.......+.+ +.|+..|+++. ..-|..|+.++...+...
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~s-a~qR~~aalvl~ewa~~~ 157 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPS-ATQRLLAALVLEEWAKAC 157 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchh-HHHHHHHHHHHHHHHHhC
Confidence 4557789999999988753333333222 26888898888 566777888888887743
No 335
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=70.47 E-value=1e+02 Score=29.44 Aligned_cols=273 Identities=10% Similarity=0.057 Sum_probs=139.6
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhc----------CCCChHHHHHHHHHHHH
Q 043116 29 LPTMVAGVWSDD-NKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLM----------REDYPQLQFEAARALTN 97 (482)
Q Consensus 29 i~~l~~~l~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~----------~~~~~~v~~~a~~~L~~ 97 (482)
-..+++.+..+. +..+...+..++-++... .....+........|+.+-. .++ -++...+..||+|
T Consensus 47 ~e~i~~Vle~~~p~t~~v~~LetvrILSRdk--~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d-~~vi~EslKCLcN 123 (532)
T KOG4464|consen 47 GERIFEVLENGEPLTHRVVCLETVRILSRDK--DGLEPLTNDQLCQKLLALAELSSNENSLPTVAD-MHVIMESLKCLCN 123 (532)
T ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHhccc--cccccccchHHHHHHHHHHHhccccCCCCcccc-hHHHHHHHHHHHH
Confidence 355666666555 455666677776666542 22222222223444444432 112 3788999999999
Q ss_pred HhCCChHhHHHHHhCCChHHHHHhhCCC-----CHHHHHHHHHHHHHhhCCChhhH-HHHHHhCChHHHHHHHcch----
Q 043116 98 IASGTSENTKVAIDHGAVPIFVKLLASP-----SDDVREQAVWALGNVAGDSSRCR-DFVLSQGALIPLLAELNEH---- 167 (482)
Q Consensus 98 l~~~~~~~~~~~~~~g~i~~L~~ll~~~-----~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~l~~~l~~~---- 167 (482)
+.-+++..++.+.+......+++.+... ...+...-++.|.-+..-.+..| +.+.+.++++.+.+.+.+.
T Consensus 124 lvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgid 203 (532)
T KOG4464|consen 124 LVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGID 203 (532)
T ss_pred HHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCC
Confidence 9999999999999988887777765321 11222222333333332222333 4556678888888888421
Q ss_pred ----------hhhhHHHHHHHHHHHhhcCCCCCChh---h----hhhHHHHHHHHhccC--ChhHH-----------HHH
Q 043116 168 ----------AKLSMLRTATWTLSNFCRGKPQPPFN---Q----IRPALRVLAQLIRSN--DEKVL-----------TDA 217 (482)
Q Consensus 168 ----------~~~~~~~~a~~~L~~L~~~~~~~~~~---~----~~~~~~~L~~ll~~~--~~~~~-----------~~~ 217 (482)
.+.+....++.++.|++.+....... . ...+...++..+... ..++- ..+
T Consensus 204 se~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~~~~elhshav~~L~nv~~k~ 283 (532)
T KOG4464|consen 204 SEINVPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRDSTEELHSHAVNLLDNVPEKC 283 (532)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccchHHHHhhccCCccCCchhhh
Confidence 12234445777778887765222221 1 122333333222211 12222 222
Q ss_pred HHHHHHhccCCcHHHHH--HHHhCcHHHHHHhhCC---------CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHH
Q 043116 218 CRALAYLADGTNDKIQA--VIEAGVCPRLVKLLGH---------RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYL 286 (482)
Q Consensus 218 l~~L~~l~~~~~~~~~~--~~~~~~l~~L~~ll~~---------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L 286 (482)
+..+...-.+ ....+. ..+...+..+..+|.. ...+.....+..|..+++.+... +......++|+|
T Consensus 284 ~~~~~~~~p~-E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~~R~~-Rkylr~qVLPPL 361 (532)
T KOG4464|consen 284 LDVLAGAKPH-ECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARSHRVM-RKYLRQQVLPPL 361 (532)
T ss_pred hhcccCCCCc-chHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhhhHHH-HHHHHHhcCCch
Confidence 2222111111 111111 1222334555555532 12345566788888888755444 445555688888
Q ss_pred HHHhcCCC-chhHHHHHHHHH
Q 043116 287 LGLLIHNH-NKSIKKEVCWII 306 (482)
Q Consensus 287 ~~ll~~~~-~~~v~~~a~~~L 306 (482)
..+-+.++ ...+|...+..+
T Consensus 362 rDV~~RPEvg~tLRnkl~Rlm 382 (532)
T KOG4464|consen 362 RDVSQRPEVGQTLRNKLVRLM 382 (532)
T ss_pred hhhhcCcchhHHHHHhhHhhe
Confidence 87766553 233444444433
No 336
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=70.23 E-value=1.1e+02 Score=32.07 Aligned_cols=91 Identities=13% Similarity=0.108 Sum_probs=65.9
Q ss_pred HHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 043116 241 CPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAV 320 (482)
Q Consensus 241 l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 320 (482)
+..|-.++. .+..|..++..|+.++...+...-.+.+..+++.|++.|....+..+-..|+.+|..+.-.-+......
T Consensus 72 ~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~ 149 (668)
T PF04388_consen 72 FDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPH 149 (668)
T ss_pred HHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHH
Confidence 344444444 346889999999999998898888899999999999999888688888888888888876444433333
Q ss_pred HHcCChHHHHHHHh
Q 043116 321 IDAGLIGPIVNLLQ 334 (482)
Q Consensus 321 ~~~~~i~~L~~ll~ 334 (482)
+. .++..+.+++.
T Consensus 150 L~-~Lf~If~Rl~~ 162 (668)
T PF04388_consen 150 LP-DLFNIFGRLLS 162 (668)
T ss_pred HH-HHHHHHHHHHH
Confidence 32 24455555553
No 337
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=69.97 E-value=1.4e+02 Score=31.01 Aligned_cols=104 Identities=11% Similarity=0.120 Sum_probs=58.8
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 043116 72 VPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151 (482)
Q Consensus 72 ~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 151 (482)
+..|..+...+- ++++.+++.++..+...-|+.-. .++..++.-+-+++..+...|...|.+|....|..+..+
T Consensus 306 ievLe~lS~D~L-~~vk~raL~ti~~lL~~kPEqE~-----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv 379 (988)
T KOG2038|consen 306 IEVLEELSKDPL-EEVKKRALKTIYDLLTNKPEQEN-----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV 379 (988)
T ss_pred HHHHHHHccccH-HHHHHHHHHHHHHHHhCCcHHHH-----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh
Confidence 333333334444 67777888888877776666543 334666777777777777777777777776666655443
Q ss_pred HHhCChHHHHHHHc-chhhhhHHHHHHHHHHHhhcC
Q 043116 152 LSQGALIPLLAELN-EHAKLSMLRTATWTLSNFCRG 186 (482)
Q Consensus 152 ~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~L~~~ 186 (482)
. ..+-+++. .+.+.....+++-+|..+...
T Consensus 380 i-----~EIer~~FRpn~~~ra~Yyav~fLnQ~~Ls 410 (988)
T KOG2038|consen 380 I-----DEIERLAFRPNVSERAHYYAVIFLNQMKLS 410 (988)
T ss_pred H-----HHHHHHHcccCccccceeehhhhhhhhHhc
Confidence 2 23333332 122333334455555544443
No 338
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.88 E-value=45 Score=31.59 Aligned_cols=133 Identities=16% Similarity=0.176 Sum_probs=89.0
Q ss_pred hHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHH
Q 043116 157 LIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVI 236 (482)
Q Consensus 157 i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 236 (482)
+..++..+ .+.+..++..+..-+..+....+.........+++.+..++.+.+..+|......+-.+....-.......
T Consensus 60 lkeLl~ql-kHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 60 LKELLSQL-KHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHHhhh-cCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 55677777 67788889999888888877755444445678888888999999999999888888776533221111111
Q ss_pred HhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCh-hhHHHHHhcCchHHHHHHhcC
Q 043116 237 EAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDD-FQTQCIINCGALRYLLGLLIH 292 (482)
Q Consensus 237 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~i~~L~~ll~~ 292 (482)
-.=+++.+...|.+-.+.++..++..+.-+....+ ........ +++.+..++..
T Consensus 139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~--il~n~~d~i~~ 193 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASK--ILENFKDVISK 193 (393)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHH--HHHHHHHHHHH
Confidence 11234566666788899999999999998887653 33332222 44445554443
No 339
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=69.68 E-value=39 Score=26.88 Aligned_cols=125 Identities=19% Similarity=0.257 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhhcCC-CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCC---------cHHHHHH----HH
Q 043116 172 MLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGT---------NDKIQAV----IE 237 (482)
Q Consensus 172 ~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~---------~~~~~~~----~~ 237 (482)
++...+.++..+.... |.. ....++.++..+.+ ++......+..|..+.+.- ..+...+ .+
T Consensus 4 i~~kl~~~l~~i~~~~~P~~----Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~ 78 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQ----WPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRS 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTT----STTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhh----CchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHH
Confidence 3445556666666543 222 23466666666665 3555555555555444210 1111111 11
Q ss_pred --hCcHHHHHHhhCCCC----hhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHH
Q 043116 238 --AGVCPRLVKLLGHRS----RLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWII 306 (482)
Q Consensus 238 --~~~l~~L~~ll~~~~----~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L 306 (482)
..++..+...+.... ..+...++.++......-+ ...+.+.++++.+.+++.++ ..+..|+.+|
T Consensus 79 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~~---~~~~~A~~cl 148 (148)
T PF08389_consen 79 NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQSP---ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSC---CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCCH---HHHHHHHHhC
Confidence 134455555554432 7788999999999887333 34567778999999999554 4577777664
No 340
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=68.25 E-value=59 Score=30.67 Aligned_cols=112 Identities=15% Similarity=0.133 Sum_probs=66.3
Q ss_pred hhHHHHHHHHhccC-------ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCC----------CChhhHHH
Q 043116 196 RPALRVLAQLIRSN-------DEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH----------RSRLVLTA 258 (482)
Q Consensus 196 ~~~~~~L~~ll~~~-------~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~----------~~~~v~~~ 258 (482)
..++|.++.++... +.......++.+..|..+..-..+..+. .+++.++.++-. ....+|..
T Consensus 209 ~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh-~Lip~vltclv~~~l~~~~~~~~h~~LRd~ 287 (343)
T cd08050 209 QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLH-QLIPSVLTCLVAKQLCSRPPDDNHWALRDY 287 (343)
T ss_pred hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHH-HHHHHHHHHhhhHhhcCCCCCchHHHHHHH
Confidence 45677777766532 5667778888888888766544433333 377887777622 23579999
Q ss_pred HHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchh-HHHHHHHHHHHH
Q 043116 259 ALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKS-IKKEVCWIISNI 309 (482)
Q Consensus 259 a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~-v~~~a~~~L~nl 309 (482)
|+.+|+.++........ -+...+...+.+.+.++..+. ...-|...|..+
T Consensus 288 AA~ll~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 288 AARLLAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 99999999864322111 112234556666666553333 355555555544
No 341
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.09 E-value=2.2e+02 Score=32.30 Aligned_cols=110 Identities=11% Similarity=0.205 Sum_probs=67.0
Q ss_pred hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHH----HHHhhcCCCChHHHHHHHHHHHHHhC
Q 043116 25 KFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPR----FVEFLMREDYPQLQFEAARALTNIAS 100 (482)
Q Consensus 25 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~----L~~ll~~~~~~~v~~~a~~~L~~l~~ 100 (482)
...-+..+++.+...|+..+..|+..|.++....+.+.. .|++|. +.+++.+++ .++|.+.-.++..+..
T Consensus 39 ~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~-----~~il~~w~~i~~kl~~d~~-~~VR~~t~~v~s~l~t 112 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEEL-----KGILPEWLVIYAKLIIDED-RTVRLLTHDVFSKLLT 112 (1312)
T ss_pred cCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHH-----hhhHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHH
Confidence 444577888888899999999999999999887532211 223333 345556777 8999999999998876
Q ss_pred CChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 043116 101 GTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVA 141 (482)
Q Consensus 101 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 141 (482)
.-.+......+ ..++...-...+.+..+...|...+....
T Consensus 113 ~lkk~lsp~LK-~li~~wl~~~~d~~~~vs~aa~~sf~~~f 152 (1312)
T KOG0803|consen 113 KLKKKLSPFLK-SLIPPWLGGQFDLDYPVSEAAKASFKDGF 152 (1312)
T ss_pred HHHHHhhHHHH-hhhhhhhheecccchHHHHHHHHHHHhhc
Confidence 22111111111 22333333333445555555655555554
No 342
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.90 E-value=1.7e+02 Score=30.97 Aligned_cols=251 Identities=13% Similarity=0.072 Sum_probs=140.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHH
Q 043116 30 PTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVA 109 (482)
Q Consensus 30 ~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 109 (482)
..|=+.++++....+-++...+.++-...+. + .+++. .+=.|...+..++ ..+|...+++...-- +..+.+
T Consensus 27 ~~ldkGlr~~~t~eqpeavvr~~RLFek~Pf-p--ifiNs-~llrLaDaF~~Gn-~llRf~V~rv~~q~g----~hln~v 97 (970)
T KOG1988|consen 27 MELDKGLRSGKTSEQPEAVVRFPRLFEKYPF-P--IFINS-QLLRLADAFPVGN-NLLRFAVLRVDQQSG----KHLNKV 97 (970)
T ss_pred HHHhhcccccccccchHHHHHHHHHHhhCCc-h--hhhhH-HHHHHHHHhccCc-HHHHHHHHHHHhhcc----ccchhh
Confidence 3344556677777777777777777655421 1 22332 2333456667777 678887777766322 222222
Q ss_pred Hh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCC
Q 043116 110 ID-HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP 188 (482)
Q Consensus 110 ~~-~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~ 188 (482)
.. ...+..+....++.|+.-|..++..++.++.--| +.+.++.++..-.++.++--.+.++.+..+.+....
T Consensus 98 ~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lip-------Efn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk 170 (970)
T KOG1988|consen 98 LNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIP-------EFNQVHHLIRISLDSHHELEVEAAEFAAACFAAQSK 170 (970)
T ss_pred hhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcc-------cccchhHHHHHHhcCccchhhHHHHHHHhhhhhhhh
Confidence 21 1234444445567899999999999998864333 334455666554344444445556666666655431
Q ss_pred CCChhhhhhHHHHHHHHhccCC--hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCC-CChhhHHHHHHHHhH
Q 043116 189 QPPFNQIRPALRVLAQLIRSND--EKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH-RSRLVLTAALRTIGN 265 (482)
Q Consensus 189 ~~~~~~~~~~~~~L~~ll~~~~--~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~ 265 (482)
....++...+-.++...+ +......+.++..+..+.. .........++++.. +..+....-+.++.+
T Consensus 171 ----~FA~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at------~A~ra~~l~m~lv~~tps~d~~v~fL~stT~ 240 (970)
T KOG1988|consen 171 ----DFACSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHAT------GASRAFGLCMSLVSGTPSIDRVVAFLYSTTN 240 (970)
T ss_pred ----hhHHHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhh------hhHHHHHHHHHHhcCCCcccceeeehhhhHH
Confidence 112334444555555433 4456667777777774432 122334556666643 444444455666666
Q ss_pred hhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 043116 266 IVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA 311 (482)
Q Consensus 266 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 311 (482)
++...-. .-.+-++.+.+.++.++..-++..+.|.+.+++.
T Consensus 241 Lasrs~~-----ai~eq~d~l~q~~ked~~kivr~~vl~kl~~La~ 281 (970)
T KOG1988|consen 241 LASRSLV-----AISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK 281 (970)
T ss_pred HHHHHHH-----HhHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence 6642111 1124456677777765566677778888777764
No 343
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=67.67 E-value=1.5e+02 Score=30.31 Aligned_cols=166 Identities=9% Similarity=0.089 Sum_probs=88.8
Q ss_pred HHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHH----hCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHH
Q 043116 203 AQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIE----AGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCII 278 (482)
Q Consensus 203 ~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~----~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~ 278 (482)
+..+....++.+..++.+|+.+..+...... +++ ..++..++..++ .++..+..++++|.|+..+ +...+.+.
T Consensus 550 l~~l~~wp~~~~fPalDilRl~v~h~~~~s~-~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~ 626 (745)
T KOG0301|consen 550 LAILLQWPVEMMFPALDILRLAVKHHSSNSL-FCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFM 626 (745)
T ss_pred HHHHhcCCHHHhhhHHHHHHHHHhccchhhh-hhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHH
Confidence 3444556678888899999888866553322 222 234555555555 5677888899999999885 44333332
Q ss_pred hc--CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh---c--CChhHHHHHHHHHHHh
Q 043116 279 NC--GALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ---D--AEFGTKKEAAWVISNA 351 (482)
Q Consensus 279 ~~--~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~---~--~~~~~~~~a~~aL~~l 351 (482)
.. .++..+...-..+ +..++...+-...|++.. ..+.-.+.+..+.+...+. . ++.+.....+.||+++
T Consensus 627 s~~~~i~~~~~~~~s~~-~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL 702 (745)
T KOG0301|consen 627 SRLESILDPVIEASSLS-NKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTL 702 (745)
T ss_pred HHHHHHhhhhhhhhccc-chhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhh
Confidence 21 1222233222223 556666655555555431 0111111344444444443 1 2344555677788888
Q ss_pred hcCCCHHHHHHHHHcCChHHHHhcCC
Q 043116 352 TSGGTHEQIKHLVREGCVKPLCDLLP 377 (482)
Q Consensus 352 ~~~~~~~~~~~l~~~~~l~~L~~ll~ 377 (482)
+.. +.....+...--++.+..-++
T Consensus 703 ~t~--~~~~~~~A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 703 MTV--DASVIQLAKNRSVDSIAKKLK 726 (745)
T ss_pred ccc--cHHHHHHHHhcCHHHHHHHHH
Confidence 773 334444455444555554443
No 344
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=67.65 E-value=1.3e+02 Score=33.38 Aligned_cols=233 Identities=17% Similarity=0.203 Sum_probs=126.1
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhh---------cCCCChHHHHHHHHHHHHH
Q 043116 28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFL---------MREDYPQLQFEAARALTNI 98 (482)
Q Consensus 28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll---------~~~~~~~v~~~a~~~L~~l 98 (482)
-+..|++.+-++...+|.-++..++.+............++.-++. ++..+ ...--..+++.++++|+.+
T Consensus 78 ~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~r-ll~v~~Ldrf~dfisd~vvapVre~caq~L~~~ 156 (1549)
T KOG0392|consen 78 FLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIR-LLCVLALDRFGDFISDNVVAPVREACAQALGAY 156 (1549)
T ss_pred HHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHH-HHHHHHHHHhcccccccchhhhHHHHHHHHHHH
Confidence 4677777777888899998999999888765332222222222221 11111 1111136899999999988
Q ss_pred hCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHH--hCChHHHHHHHcchhhhhHHHHH
Q 043116 99 ASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLS--QGALIPLLAELNEHAKLSMLRTA 176 (482)
Q Consensus 99 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~l~~~l~~~~~~~~~~~a 176 (482)
..+..+... ...+..+..++..++-+++.-.+..+..... ..++.+.. ..+++..+..+ .+.+..++..|
T Consensus 157 l~~~~~s~~----~~~~~il~q~~~q~~w~ir~Ggll~iky~~a---ir~d~l~~~~~~vl~~~i~~L-~ds~ddv~~~a 228 (1549)
T KOG0392|consen 157 LKHMDESLI----KETLDILLQMLRQPNWEIRHGGLLGIKYNVA---IRQDLLFQLLNLVLDFVIEGL-EDSDDDVRSVA 228 (1549)
T ss_pred HHhhhhHhh----HHHHHHHHHHHcCcchhheechHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhh-hhcchHHHHHH
Confidence 774332211 1245667777776666665544444433321 11111110 01234444455 56677788888
Q ss_pred HHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCCh-h-HHHHHHHHHHHhccCCcHHHH----HHHHhCcHHHHHHhhCC
Q 043116 177 TWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDE-K-VLTDACRALAYLADGTNDKIQ----AVIEAGVCPRLVKLLGH 250 (482)
Q Consensus 177 ~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~-~-~~~~~l~~L~~l~~~~~~~~~----~~~~~~~l~~L~~ll~~ 250 (482)
+.++.-.....+......+..++..+...+..-+. . -.......+..++... +..+ .-...|+++.+...+.+
T Consensus 229 a~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~-evl~l~~~~n~~~~Lvp~~~p~l~~ 307 (1549)
T KOG0392|consen 229 AQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIEN-EVLDLFEQQNLEVGLVPRLWPFLRH 307 (1549)
T ss_pred HHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhH-HHHHHHHHhhhhhccchhhHHHHHH
Confidence 88777666654334444445555555555442222 0 1111111222233222 1111 11224788889999988
Q ss_pred CChhhHHHHHHHHhHhhcCC
Q 043116 251 RSRLVLTAALRTIGNIVTGD 270 (482)
Q Consensus 251 ~~~~v~~~a~~~L~~l~~~~ 270 (482)
.-..++..++..+..+....
T Consensus 308 ~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 308 TISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 88889999999988887644
No 345
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=67.54 E-value=1.3e+02 Score=29.56 Aligned_cols=302 Identities=13% Similarity=0.129 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHHhhCCChhh-HHHHHHhCChH-HHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhh-hhhHHHHHH
Q 043116 127 DDVREQAVWALGNVAGDSSRC-RDFVLSQGALI-PLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQ-IRPALRVLA 203 (482)
Q Consensus 127 ~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~-~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~-~~~~~~~L~ 203 (482)
...|..|..+|+.++..-+.. ... ... .|+..| ++....-+..++-++...+.......... ...+.+.|.
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~-----~~~~~L~~~L-~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~ 174 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQE-----IFQPLLLPYL-NSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLL 174 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHH-----HHHHHHHHHh-cchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHH
Confidence 345678889999888543221 111 222 466666 44443344446666666665542111111 456667777
Q ss_pred HHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHH-----HHHHhhC---C--CChhhHHHHHHHHh----HhhcC
Q 043116 204 QLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCP-----RLVKLLG---H--RSRLVLTAALRTIG----NIVTG 269 (482)
Q Consensus 204 ~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~-----~L~~ll~---~--~~~~v~~~a~~~L~----~l~~~ 269 (482)
..|..+.+..-......+..+-.........+.+.|.++ .|-.... . ++.--...|-.+.. .+...
T Consensus 175 ~~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~ 254 (441)
T PF12054_consen 175 EILENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKS 254 (441)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHh
Confidence 777755443333333444444333333444455555522 1111111 1 11101111111111 11111
Q ss_pred ---Chhh--HHHHHhc--C---chHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCCh
Q 043116 270 ---DDFQ--TQCIINC--G---ALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ-DAEF 338 (482)
Q Consensus 270 ---~~~~--~~~l~~~--~---~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~ 338 (482)
.... .+.+-+. . .+...-..-..- +..|+..++.++..+-. -|+.. +.+|..|++-++ +++.
T Consensus 255 l~~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~-~~~V~Aa~A~A~v~l~~-lP~KL-----nPiIrpLMdSIK~Een~ 327 (441)
T PF12054_consen 255 LSPSQKLSALQALEDRRQRLQAAIEEAKEVQTSR-DVRVLAAAASALVALGG-LPKKL-----NPIIRPLMDSIKREENE 327 (441)
T ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcc-CCCCc-----cHHHHHHHHHhhccccH
Confidence 1110 1111100 0 111111111112 44555556666665533 22211 246778888887 5688
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC---CCHHHH--HHHHHHHHHHHHhchhccccCCC-CcccH
Q 043116 339 GTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC---PDPQIV--TVCLIGLENILKVGEAEKNTDNI-GDVNQ 412 (482)
Q Consensus 339 ~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~---~~~~v~--~~~l~~L~~l~~~~~~~~~~~~~-~~~~~ 412 (482)
.+|..++.+|..+..... .. +.--...++..|+.++-. ..|++. ......+-.+.+........+.. ...+.
T Consensus 328 ~LQ~rsA~slA~Li~~~~-~r-kp~PndKIvkNLc~flC~D~seTP~~~~~~~~~~gILsl~k~~~~~~~~~~~~~~~~~ 405 (441)
T PF12054_consen 328 LLQQRSAESLARLIQLCV-DR-KPCPNDKIVKNLCTFLCVDTSETPEFSHNVDKKDGILSLRKEEDKADHADAASEEREQ 405 (441)
T ss_pred HHHHHHHHHHHHHHHHHh-CC-CCCCcHHHHHHHhhhhccCcccCCCCCCCcchhhcccchhhhcccccccccccchhhh
Confidence 999999999998876322 00 000112345556665522 222221 11122222222221111111111 11222
Q ss_pred HHHHHHHhchHHHHHHhhcCCCHHHHHHHHH
Q 043116 413 YAQLVEEAEGLEKIENLQSHDNNDIHEMSVK 443 (482)
Q Consensus 413 ~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~ 443 (482)
-.-.+.+-|+...|..|...-.+++.+..=+
T Consensus 406 ~~a~I~RrGA~~aL~~l~~~FG~~Lf~~lP~ 436 (441)
T PF12054_consen 406 KEARIQRRGAELALEQLAKRFGSSLFEKLPK 436 (441)
T ss_pred hhhHHHhcCHHHHHHHHHHHHhHHHHHhhhH
Confidence 3345788888888888877766666554433
No 346
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=66.96 E-value=1.4e+02 Score=29.58 Aligned_cols=229 Identities=13% Similarity=0.095 Sum_probs=126.3
Q ss_pred ChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC--C-------CCChhh--hhhHHHHHHHHhcc----CC----hhHHHH
Q 043116 156 ALIPLLAELNEHAKLSMLRTATWTLSNFCRGK--P-------QPPFNQ--IRPALRVLAQLIRS----ND----EKVLTD 216 (482)
Q Consensus 156 ~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~--~-------~~~~~~--~~~~~~~L~~ll~~----~~----~~~~~~ 216 (482)
+|..+.+++..+....++.+++|.|.+|-... . ..++.. ...++...+.++-. +. +.....
T Consensus 98 vir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvkv 177 (589)
T PF11229_consen 98 VIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVKV 177 (589)
T ss_pred HHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHHHH
Confidence 57777888866777888999999998776432 0 011111 24556666665532 21 344444
Q ss_pred HHHHHHHhccC---CcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCC
Q 043116 217 ACRALAYLADG---TNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHN 293 (482)
Q Consensus 217 ~l~~L~~l~~~---~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~ 293 (482)
++..+...... ++-+-. -++..|+++ +-.++++..|+.+...=+..+. ....++..=+.|.++.-++.
T Consensus 178 vl~~ia~vgeS~qyPPVNWa-----alLsPLMRl--nfGeEvq~lCLeiAvtQaqSSq-sAa~fLg~WlsPpli~sLs~- 248 (589)
T PF11229_consen 178 VLKPIATVGESYQYPPVNWA-----ALLSPLMRL--NFGEEVQQLCLEIAVTQAQSSQ-SAAMFLGSWLSPPLIHSLSV- 248 (589)
T ss_pred HHHHhhhcCCCCCCCCccHH-----HHhhHHHhc--cccHHHHHHHHHHHHHhccccc-cHHHHHHhhcCcchhhhhhH-
Confidence 55444443321 222211 123344443 2356788887765544443222 23445554455666655543
Q ss_pred CchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHH
Q 043116 294 HNKSIKKEVCWIISNITA-GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPL 372 (482)
Q Consensus 294 ~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L 372 (482)
..|+.-...+.-.+. -.++.++.+++.-++..+-....-.++++...++..|..-....+|.+.-.-.=....+++
T Consensus 249 ---~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~P~~h~Ws~Lc~ttekI 325 (589)
T PF11229_consen 249 ---NTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKLPSPAQHCWSLLCETTEKI 325 (589)
T ss_pred ---HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH
Confidence 467777777777766 3566667766633333333222245788999999999887776555443322223467788
Q ss_pred HhcCCC----CCHHHHHHHHHHHHHHHH
Q 043116 373 CDLLPC----PDPQIVTVCLIGLENILK 396 (482)
Q Consensus 373 ~~ll~~----~~~~v~~~~l~~L~~l~~ 396 (482)
.+++-+ .+-+......++|..+..
T Consensus 326 F~lLPn~i~~~eveLYi~vAkCLSEMtd 353 (589)
T PF11229_consen 326 FDLLPNKIQRNEVELYIGVAKCLSEMTD 353 (589)
T ss_pred HHhCcccccHHHHHHHHHHHHHHhhcCH
Confidence 887733 333555555666665543
No 347
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.94 E-value=2.6e+02 Score=32.75 Aligned_cols=271 Identities=15% Similarity=0.127 Sum_probs=138.3
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC-CCCChhh
Q 043116 116 PIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK-PQPPFNQ 194 (482)
Q Consensus 116 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~ 194 (482)
..+...+...++..+-.+..+++.++...+.. .. -.+..+..+..+....|+-.+.--..++..+-++. .......
T Consensus 879 ~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~-~f--~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qh 955 (2067)
T KOG1822|consen 879 TLIVNSLINPNPKLRCAAAEALARLAQVVGSA-PF--VASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQH 955 (2067)
T ss_pred HHHhhhhccCChHHHHHHHHHHHHHHHhcccc-ch--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchh
Confidence 44455566788888888888888887433221 11 11245566777755556555555666666666665 2334444
Q ss_pred hhhHHHHHHHHhccC-ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCC-CC--hhhHHHHHHHHh------
Q 043116 195 IRPALRVLAQLIRSN-DEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH-RS--RLVLTAALRTIG------ 264 (482)
Q Consensus 195 ~~~~~~~L~~ll~~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~--~~v~~~a~~~L~------ 264 (482)
....+..+..+-+++ .|.++..++.++..+...........++ ..+..+..++-+ +. .++...--+++.
T Consensus 956 l~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~ 1034 (2067)
T KOG1822|consen 956 LNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDED 1034 (2067)
T ss_pred cccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCCCCcchhhhhhhhccccccchhHH
Confidence 456677777776655 5699999999999988654433322222 223344444433 22 112221111221
Q ss_pred Hhh-------cCChh--hHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc
Q 043116 265 NIV-------TGDDF--QTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQD 335 (482)
Q Consensus 265 ~l~-------~~~~~--~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~ 335 (482)
++. ..+.. ... .+....+-...-++.++ ++.++.++..++-++-...+.... -.-+++.+..++.+
T Consensus 1035 alittlgpeL~~N~~~d~t~-~~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1035 ALITTLGPELGPNGDKDSTS-TLRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLSS 1109 (2067)
T ss_pred HHHHhcccccCCCCcccchh-HHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhcc
Confidence 111 11111 111 11111222222333444 888888998888888654333211 11245666666655
Q ss_pred CChhHHHHHHHHHHHhhcCCCHH---HHHHH--------------H-HcCChHHHHhcCC-CCCHHHHHHHHHHHHHHH
Q 043116 336 AEFGTKKEAAWVISNATSGGTHE---QIKHL--------------V-REGCVKPLCDLLP-CPDPQIVTVCLIGLENIL 395 (482)
Q Consensus 336 ~~~~~~~~a~~aL~~l~~~~~~~---~~~~l--------------~-~~~~l~~L~~ll~-~~~~~v~~~~l~~L~~l~ 395 (482)
...-.+.....++..+......+ ....+ . +.|.-..+..++. ..|.+..+.....|.+++
T Consensus 1110 ~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~~ 1188 (2067)
T KOG1822|consen 1110 SYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRML 1188 (2067)
T ss_pred hhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 44444444444444443321100 00111 1 3344444555555 345567777777777754
No 348
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=66.71 E-value=31 Score=27.62 Aligned_cols=74 Identities=8% Similarity=0.059 Sum_probs=56.5
Q ss_pred ccHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHH-HHHhhcCCC--ChHHHHHHHHHHHHHhC
Q 043116 27 EILPTMVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPR-FVEFLMRED--YPQLQFEAARALTNIAS 100 (482)
Q Consensus 27 ~~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~-L~~ll~~~~--~~~v~~~a~~~L~~l~~ 100 (482)
.++..|.+.++ +.++.++..|+..|-.+....+...-.++...+++.. |++++.... ...++..++..+...+.
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 46778888887 4689999999999998888775566677778889986 899986322 14788888887777664
No 349
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.65 E-value=1.8e+02 Score=30.73 Aligned_cols=363 Identities=13% Similarity=0.197 Sum_probs=173.2
Q ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHHhcCC---CCCcHHHHHh--cCCH-HHHHHhhcCCCChHHHHHHHHHHHHHhCC
Q 043116 30 PTMVAGVWSD--DNKVQLEATTLFRKMLSFD---RNSPIEKVIQ--SGVV-PRFVEFLMREDYPQLQFEAARALTNIASG 101 (482)
Q Consensus 30 ~~l~~~l~s~--~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~--~g~~-~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 101 (482)
-.+++++.++ ++.++..|+..+.|....+ ..+....+.+ ...+ ..++.++-+.. ..+|.+-..+|+-++..
T Consensus 40 l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s~-~~iQ~qlseal~~Ig~~ 118 (960)
T KOG1992|consen 40 LLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSSP-FNIQKQLSEALSLIGKR 118 (960)
T ss_pred HHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHhcc
Confidence 4556666543 6889999999999998832 1111122221 1123 33455555555 68999999999999863
Q ss_pred ChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh-CCChhhH------HHHHHhC-ChHHHHHHHcc-------
Q 043116 102 TSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVA-GDSSRCR------DFVLSQG-ALIPLLAELNE------- 166 (482)
Q Consensus 102 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~------~~~~~~~-~i~~l~~~l~~------- 166 (482)
+-..+ .-..++-|+.-+++.|-..-...+.+-..+. +..+..| +...-.+ .-.++..++.+
T Consensus 119 DFP~k----WptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~ 194 (960)
T KOG1992|consen 119 DFPDK----WPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQR 194 (960)
T ss_pred ccchh----hHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhh
Confidence 31111 1134677777777666554444444433343 1111111 1111001 11233333321
Q ss_pred h-hhhh-------HHHHHHHHHHHhhcCC-CCCChhhhhhHHHHHHHHhccCC-------------hhHHHHHHHHHHHh
Q 043116 167 H-AKLS-------MLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLIRSND-------------EKVLTDACRALAYL 224 (482)
Q Consensus 167 ~-~~~~-------~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~ll~~~~-------------~~~~~~~l~~L~~l 224 (482)
+ .+.. +..-.+.....|...+ |.--...+...++...+++..++ .+++...|..+.-.
T Consensus 195 ~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY 274 (960)
T KOG1992|consen 195 HANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLY 274 (960)
T ss_pred cccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHH
Confidence 1 1111 1222333444454443 22222233456666666665221 23344555555544
Q ss_pred ccCCcHHHHHHHHhCcHHHHHHhhCCCC-----hhhHHHHHHHHhHhhcCCh--------hh------------------
Q 043116 225 ADGTNDKIQAVIEAGVCPRLVKLLGHRS-----RLVLTAALRTIGNIVTGDD--------FQ------------------ 273 (482)
Q Consensus 225 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~-----~~v~~~a~~~L~~l~~~~~--------~~------------------ 273 (482)
+...++..+.++. .++...-.++.+.. +.....|+..|.+.+.... ..
T Consensus 275 ~~kYeEef~~fl~-~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~e 353 (960)
T KOG1992|consen 275 ATKYEEEFQPFLP-DFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREE 353 (960)
T ss_pred HHhhHHHHHhhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchh
Confidence 4444443332222 23333334443322 2345556666666664211 11
Q ss_pred HHHHHhcCchHHHHHHhcCCCchhHH-HHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH-h--cCChhHHHHHHHHHH
Q 043116 274 TQCIINCGALRYLLGLLIHNHNKSIK-KEVCWIISNITAGNREQIQAVIDAGLIGPIVNLL-Q--DAEFGTKKEAAWVIS 349 (482)
Q Consensus 274 ~~~l~~~~~i~~L~~ll~~~~~~~v~-~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll-~--~~~~~~~~~a~~aL~ 349 (482)
-..+.+.+-++.+-.-|+.. |.+.| +.|+..+.-++......+..++.. .+..+++-. . +.+..-+..++..+.
T Consensus 354 DeElFED~pleYiRRDlEGs-DvdTRRR~a~dlvrgL~~~fe~~vt~v~~~-~v~~~l~~y~~nPS~nWk~kd~aiyL~t 431 (960)
T KOG1992|consen 354 DEELFEDNPLEYIRRDLEGS-DVDTRRRAAIDLVRGLCKNFEGQVTGVFSS-EVQRLLDQYSKNPSGNWKKKDRAIYLVT 431 (960)
T ss_pred hHHHhccCHHHHHHHhcccC-CcchhHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHhccCCCccccccchhhhhhH
Confidence 12233444566666666666 55544 556667777765433323333321 222222211 1 233333444555555
Q ss_pred HhhcCCC--------------------HHHHHHHHH-----------------------------cCChHHHHhcCCCCC
Q 043116 350 NATSGGT--------------------HEQIKHLVR-----------------------------EGCVKPLCDLLPCPD 380 (482)
Q Consensus 350 ~l~~~~~--------------------~~~~~~l~~-----------------------------~~~l~~L~~ll~~~~ 380 (482)
.++..+. ..-...+.. ..+++.+...++.+.
T Consensus 432 alaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s 511 (960)
T KOG1992|consen 432 ALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAES 511 (960)
T ss_pred HHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcc
Confidence 5544320 000000000 125677777888888
Q ss_pred HHHHHHHHHHHHHHHHhchh
Q 043116 381 PQIVTVCLIGLENILKVGEA 400 (482)
Q Consensus 381 ~~v~~~~l~~L~~l~~~~~~ 400 (482)
.-+...|..++.+++...++
T Consensus 512 ~vvhsYAA~aiEkil~vre~ 531 (960)
T KOG1992|consen 512 RVVHSYAAIAIEKLLTVREN 531 (960)
T ss_pred hHHHHHHHHHHHhccccccC
Confidence 88888888888888877665
No 350
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=66.50 E-value=48 Score=31.06 Aligned_cols=78 Identities=24% Similarity=0.361 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHhCCChHhHHHHHhCC--ChHHHHHhhCCC---CHHHHHHHHHHHHHhhCCChhhHHHHHHh------
Q 043116 86 QLQFEAARALTNIASGTSENTKVAIDHG--AVPIFVKLLASP---SDDVREQAVWALGNVAGDSSRCRDFVLSQ------ 154 (482)
Q Consensus 86 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~------ 154 (482)
.+|..|+.++..+.. .+.....++..+ ++..|+++++.+ ...++..|+.+|..++.+.....+.+...
T Consensus 237 ~iRllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~H 315 (329)
T PF06012_consen 237 QIRLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSH 315 (329)
T ss_pred HHHHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCc
Confidence 455666666655554 667777788777 899999999854 46789999999999998777666655443
Q ss_pred CChHHHHHHH
Q 043116 155 GALIPLLAEL 164 (482)
Q Consensus 155 ~~i~~l~~~l 164 (482)
|++..+++.+
T Consensus 316 GiL~~llR~~ 325 (329)
T PF06012_consen 316 GILPQLLRKC 325 (329)
T ss_pred ccHHHHHHHH
Confidence 4455555443
No 351
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=66.37 E-value=6.2 Score=29.56 Aligned_cols=41 Identities=27% Similarity=0.271 Sum_probs=34.1
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHH
Q 043116 343 EAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVT 385 (482)
Q Consensus 343 ~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~ 385 (482)
..+..+..++. .|+....+++.|++..|+.+|.|+|.++..
T Consensus 65 ~~Ik~l~~La~--~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 65 EEIKKLSVLAT--APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHccC--ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 35666677776 678899999999999999999999988754
No 352
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.68 E-value=65 Score=30.56 Aligned_cols=133 Identities=11% Similarity=0.143 Sum_probs=88.6
Q ss_pred cHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHH
Q 043116 240 VCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAG-NREQIQ 318 (482)
Q Consensus 240 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~ 318 (482)
-+.-++..+++.+..++..|+.-|..+....+.... .--..+++.+..++.+. +..+|.....++-.++.. .++...
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~-~~~~~ll~~~~~~i~D~-~~~vR~~~~qll~~~i~~~~~e~~s 136 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQ-SHLYALLQKLRELILDD-DSLVRDALYQLLDSLILPACKEDQS 136 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHH-HHHHHHHHHhhhhhcCc-cccHHHHHHHHHHHHHhhcchhhhc
Confidence 356788889999999999999999988876554433 12234677788888887 888999998888887763 233211
Q ss_pred HHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCC
Q 043116 319 AVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP 377 (482)
Q Consensus 319 ~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~ 377 (482)
.++. =+++.+...+..-.++++..+...+.-++....+........ .++.+.++++
T Consensus 137 p~~~-l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~--il~n~~d~i~ 192 (393)
T KOG2149|consen 137 PMVS-LLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASK--ILENFKDVIS 192 (393)
T ss_pred chHH-HHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHH--HHHHHHHHHH
Confidence 1111 134444444556788999999999999887665555444333 4444444443
No 353
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=64.46 E-value=2e+02 Score=30.69 Aligned_cols=194 Identities=12% Similarity=0.076 Sum_probs=97.4
Q ss_pred hhHHHHHHHHhcc-CChhHHHHHHHHHHHhccC------CcHHHHHHHHhCcHHHHHHhhCCCC--hhhHHHHHHHHhHh
Q 043116 196 RPALRVLAQLIRS-NDEKVLTDACRALAYLADG------TNDKIQAVIEAGVCPRLVKLLGHRS--RLVLTAALRTIGNI 266 (482)
Q Consensus 196 ~~~~~~L~~ll~~-~~~~~~~~~l~~L~~l~~~------~~~~~~~~~~~~~l~~L~~ll~~~~--~~v~~~a~~~L~~l 266 (482)
...++.++.++.. .+++++..+...|+.++.. .+.....+...+.+..|+..+-.+. .......+..+..+
T Consensus 189 ~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~s~s~lVs~i~vlI~l 268 (838)
T KOG2073|consen 189 QELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGTSLSVLVSGIIVLISL 268 (838)
T ss_pred HHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCcchhhHHHHHHHHHHh
Confidence 6789999999874 4578888888888877754 3345555666677777776654322 22333333333322
Q ss_pred hcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC---ChHHHHHHHhcCChhHHHH
Q 043116 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAG---LIGPIVNLLQDAEFGTKKE 343 (482)
Q Consensus 267 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~---~i~~L~~ll~~~~~~~~~~ 343 (482)
........... -....+.+-.... ++.+......++..-. .+..+.+.+.. .++.=...+..+=...|..
T Consensus 269 l~~~r~~~~~~---~~~~i~~q~~~~~-d~~~~~~~l~~~~p~L---~dF~~lL~~~~~~~~l~tt~g~l~pPLG~~Rlk 341 (838)
T KOG2073|consen 269 LNPRRDTVETN---STTTILSQPPSER-DPIVLNELLGAMEPRL---GDFVQLLLEPEKLDLLETTYGELEPPLGFERLK 341 (838)
T ss_pred cCccccccccc---ceeeeecCCcccc-CccchHHHHHHHHHHH---HHHHHHhcCCccchhhhhhhhccCCCcchHHHH
Confidence 22111110000 0001111111122 3344444444433222 12122222211 1111112222222356777
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHH--HHHHHHHHHHHHHH
Q 043116 344 AAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQ--IVTVCLIGLENILK 396 (482)
Q Consensus 344 a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~--v~~~~l~~L~~l~~ 396 (482)
.+..+..+....+......+...++++.+.+++...... +...+-.++.....
T Consensus 342 i~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y~~nN~lh~~~e~~I~~~~~ 396 (838)
T KOG2073|consen 342 IVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEYPWNNFLHAQVESCIVENLS 396 (838)
T ss_pred HHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhcchhHHHHHHHHHHHHHhhh
Confidence 888888888776777777777788887777777654433 33344444444443
No 354
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=64.37 E-value=36 Score=23.70 Aligned_cols=51 Identities=27% Similarity=0.472 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 043116 384 VTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILET 447 (482)
Q Consensus 384 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~ 447 (482)
...++++|..+-....+ .+.+...+.-..+..|-.|++++|...|..++..
T Consensus 18 ~~~~l~~L~~L~~~~~t-------------~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~ 68 (75)
T smart00509 18 VSRCLDILKKLKKLPIT-------------VDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKS 68 (75)
T ss_pred HHHHHHHHHHHhcCCCC-------------HHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 34566777776543322 7778888888889999999999999999998874
No 355
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=64.24 E-value=32 Score=27.66 Aligned_cols=124 Identities=12% Similarity=0.101 Sum_probs=80.4
Q ss_pred CChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhC--CChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHH
Q 043116 101 GTSENTKVAIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAG--DSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTAT 177 (482)
Q Consensus 101 ~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~ 177 (482)
++++.-+.+.+.+++..+.++++. ....++.+.+.+++-+.. .++..--.+...+.+..++..-.+-.++++...-+
T Consensus 14 ~~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYI 93 (149)
T PF09758_consen 14 NDPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYI 93 (149)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHH
Confidence 356677888999999999999886 567777777777776652 22222233455566777776655667888999988
Q ss_pred HHHHHhhcCCCCCChh--hh--hhHHHH---HHHHhccCChhHHHHHHHHHHHh
Q 043116 178 WTLSNFCRGKPQPPFN--QI--RPALRV---LAQLIRSNDEKVLTDACRALAYL 224 (482)
Q Consensus 178 ~~L~~L~~~~~~~~~~--~~--~~~~~~---L~~ll~~~~~~~~~~~l~~L~~l 224 (482)
..|..++..-+..... .. .+-.|. -+++.+++|+-+|.++-....++
T Consensus 94 sfLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 94 SFLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 8888888653222111 11 233443 45566677777777776665554
No 356
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.65 E-value=11 Score=34.83 Aligned_cols=62 Identities=8% Similarity=0.073 Sum_probs=53.1
Q ss_pred HHHHHHHHhCCChHhHHHHHhCCChHHHHHh--hCCCCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 043116 91 AARALTNIASGTSENTKVAIDHGAVPIFVKL--LASPSDDVREQAVWALGNVAGDSSRCRDFVL 152 (482)
Q Consensus 91 a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l--l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 152 (482)
..+.++++|...++..+.+.+.|+++.++.- +.+.+|-+++..+.|+.++..++.+.++.+.
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 5678999999999999999999999888773 4567899999999999999988877766654
No 357
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=61.80 E-value=26 Score=27.26 Aligned_cols=98 Identities=17% Similarity=0.210 Sum_probs=58.1
Q ss_pred CChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcC---CCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccH
Q 043116 336 AEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLL---PCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQ 412 (482)
Q Consensus 336 ~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll---~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~ 412 (482)
++.......+.-|+..+.. . ..+.. ++..|..-+ +..++.++.+++..|..++..+...
T Consensus 15 d~~gp~~~~l~eIa~~t~~-~-~~~~~-----I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~----------- 76 (125)
T PF01417_consen 15 DPWGPPGKLLAEIAQLTYN-S-KDCQE-----IMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSER----------- 76 (125)
T ss_dssp SSSS--HHHHHHHHHHTTS-C-HHHHH-----HHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HH-----------
T ss_pred CCCCcCHHHHHHHHHHHhc-c-ccHHH-----HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHH-----------
Confidence 3334455566677777764 2 33343 345555555 6778899999999999999887663
Q ss_pred HHHHHH-HhchHHHHHHhhc-C-----CCHHHHHHHHHHHHHhcCC
Q 043116 413 YAQLVE-EAEGLEKIENLQS-H-----DNNDIHEMSVKILETYWCG 451 (482)
Q Consensus 413 ~~~~l~-~~~~~~~l~~l~~-~-----~~~~v~~~a~~~l~~~~~~ 451 (482)
+..-++ ....+..+.++.. + ....|+++|..+++-+.++
T Consensus 77 ~~~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d~ 122 (125)
T PF01417_consen 77 FVDELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLNDD 122 (125)
T ss_dssp HHHHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhCCc
Confidence 344442 2234444444433 1 1235899999999876654
No 358
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=61.50 E-value=1.4e+02 Score=27.75 Aligned_cols=144 Identities=8% Similarity=0.054 Sum_probs=89.1
Q ss_pred ChhHHHHHHHHHHHhccCCcHHHHHHHHh-----------CcHHHHHHhhC------CCChhhHHHHHHHHhHhhcCChh
Q 043116 210 DEKVLTDACRALAYLADGTNDKIQAVIEA-----------GVCPRLVKLLG------HRSRLVLTAALRTIGNIVTGDDF 272 (482)
Q Consensus 210 ~~~~~~~~l~~L~~l~~~~~~~~~~~~~~-----------~~l~~L~~ll~------~~~~~v~~~a~~~L~~l~~~~~~ 272 (482)
.-++|..++.|+.....++++....+++. .....++..|- +.++--...|+.+|..+..+++.
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~ 130 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE 130 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 45678888888888887766655555541 01112444333 23444455688889999888776
Q ss_pred hHHHHHhc------------CchHHHHHHhcC----CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC-ChHHHHHHHh-
Q 043116 273 QTQCIINC------------GALRYLLGLLIH----NHNKSIKKEVCWIISNITAGNREQIQAVIDAG-LIGPIVNLLQ- 334 (482)
Q Consensus 273 ~~~~l~~~------------~~i~~L~~ll~~----~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~-~i~~L~~ll~- 334 (482)
....+..- ..++.+..+|.. ..++.++..-...|+-...+++..+..++..+ .++.|++...
T Consensus 131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~ 210 (312)
T PF04869_consen 131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQ 210 (312)
T ss_dssp HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS-
T ss_pred HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhc
Confidence 65554322 145666666544 44777777777888888889999999999755 6999999754
Q ss_pred --cCChhHHHHHHHHHHHhhc
Q 043116 335 --DAEFGTKKEAAWVISNATS 353 (482)
Q Consensus 335 --~~~~~~~~~a~~aL~~l~~ 353 (482)
+.+.-++--++..|+-+..
T Consensus 211 ~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 211 SSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp -TCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHH
Confidence 3456666666666666654
No 359
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=61.41 E-value=1.2e+02 Score=27.21 Aligned_cols=178 Identities=17% Similarity=0.162 Sum_probs=98.8
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCC-------hhhHHHHHHhCChHHHHHHHcchh---hhhHHHHHHHHHHHhhc
Q 043116 116 PIFVKLLASPSDDVREQAVWALGNVAGDS-------SRCRDFVLSQGALIPLLAELNEHA---KLSMLRTATWTLSNFCR 185 (482)
Q Consensus 116 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-------~~~~~~~~~~~~i~~l~~~l~~~~---~~~~~~~a~~~L~~L~~ 185 (482)
+.+.+-+.+. ...+.++..|..++... .+.|-.+.-...+|.++..+.+.. ..+....++..|..++.
T Consensus 67 ~Ll~KGL~Ss--~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~ 144 (262)
T PF14225_consen 67 PLLLKGLRSS--STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAE 144 (262)
T ss_pred HHHhCccCCC--CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHH
Confidence 4444444443 33455667777776321 112222333345666676663332 12445567778888885
Q ss_pred CCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 043116 186 GKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGN 265 (482)
Q Consensus 186 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 265 (482)
...... ...++.....---.+..+....++..|+.-. .++ .+...+..++.+|.++.+.++..++.+|..
T Consensus 145 ~~~~~~---La~il~~ya~~~fr~~~dfl~~v~~~l~~~f--~P~-----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ 214 (262)
T PF14225_consen 145 AQGLPN---LARILSSYAKGRFRDKDDFLSQVVSYLREAF--FPD-----HEFQILTFLLGLLENGPPWLRRKTLQILKV 214 (262)
T ss_pred hCCCcc---HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh--Cch-----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 432111 1122222211111233455555665555422 111 112356778889988888999999999999
Q ss_pred hhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 043116 266 IVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA 311 (482)
Q Consensus 266 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 311 (482)
+....+-... ...+++..+.++++++ ...+|..+|-++..
T Consensus 215 ll~~~d~~~~--~~~dlispllrlL~t~----~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 215 LLPHVDMRSP--HGADLISPLLRLLQTD----LWMEALEVLDEIVT 254 (262)
T ss_pred HhccccCCCC--cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence 9875443322 5556899999999887 44567766666554
No 360
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.80 E-value=31 Score=36.47 Aligned_cols=96 Identities=14% Similarity=0.081 Sum_probs=67.8
Q ss_pred hhhHHHHHHHHhccCChhHHHHHHHHHHHhc----cCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC
Q 043116 195 IRPALRVLAQLIRSNDEKVLTDACRALAYLA----DGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGD 270 (482)
Q Consensus 195 ~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~----~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 270 (482)
...++....++|.+++-.+|..++.++.... ..++.... ++ ...-+.++..+...++-+...|+.+|.+++...
T Consensus 801 v~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlP-lv-hq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~s 878 (1014)
T KOG4524|consen 801 VLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLP-LV-HQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYS 878 (1014)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhH-HH-HhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHh
Confidence 3567777788889999999999999887533 33332222 22 245688889999999999999999999999877
Q ss_pred hhhHHHHHhcCchHHHHHHhcC
Q 043116 271 DFQTQCIINCGALRYLLGLLIH 292 (482)
Q Consensus 271 ~~~~~~l~~~~~i~~L~~ll~~ 292 (482)
.+....=+-..++|.+-.++..
T Consensus 879 gDFv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 879 GDFVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 6554433334567776655543
No 361
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=60.45 E-value=1.9e+02 Score=28.92 Aligned_cols=140 Identities=13% Similarity=0.073 Sum_probs=83.9
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcch-------hhhhHHHHHHHHHHHhhcCCCC
Q 043116 117 IFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEH-------AKLSMLRTATWTLSNFCRGKPQ 189 (482)
Q Consensus 117 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-------~~~~~~~~a~~~L~~L~~~~~~ 189 (482)
.+++.+-+.++..+..|+..|..= +.... .++.++..+... .+-..........+.|..+..-
T Consensus 211 ~It~a~~g~~~~~r~eAL~sL~TD----sGL~~------LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 211 EITEACTGSDEPLRQEALQSLETD----SGLQQ------LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHHhcCCHHHHHHHHHhhccC----ccHHH------HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 344444445666666666655522 22211 355666665332 2445566677777777777544
Q ss_pred CChhhhhhHHHHHHHHhcc----------CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC--ChhhHH
Q 043116 190 PPFNQIRPALRVLAQLIRS----------NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR--SRLVLT 257 (482)
Q Consensus 190 ~~~~~~~~~~~~L~~ll~~----------~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~ 257 (482)
.-......++|.++.++-+ +.+.+|.-++..+..++.+....... .+..++..+.+.+.++ ......
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~Y 359 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHY 359 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhh
Confidence 4444567888888877642 33668888888888888665544433 4556777777777664 334555
Q ss_pred HHHHHHhHhh
Q 043116 258 AALRTIGNIV 267 (482)
Q Consensus 258 ~a~~~L~~l~ 267 (482)
-++..|..+.
T Consensus 360 Gai~gL~~lg 369 (576)
T KOG2549|consen 360 GAIAGLSELG 369 (576)
T ss_pred hHHHHHHHhh
Confidence 5666666554
No 362
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=60.45 E-value=1.3e+02 Score=27.15 Aligned_cols=63 Identities=17% Similarity=0.320 Sum_probs=39.7
Q ss_pred hhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhC
Q 043116 24 SKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIAS 100 (482)
Q Consensus 24 ~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 100 (482)
...+.+.-|.++++.+|+..+ .+...| +... +++.+++|.|+..=. + +.+...+++.|.+++.
T Consensus 10 dcl~~LkdL~r~lr~dd~~~~-~v~r~l---g~~~-------iv~~DLiPiL~~~~~--~-~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 10 DCLECLKDLKRFLRRDDEDQR-DVRRQL---GEWN-------IVQKDLIPILISYKD--D-DKLFLACLRLLVNLTW 72 (266)
T ss_pred hHHHHHHHHHHHHHHhCcchH-HHHHHH---HHhc-------hhhhhHHHHHHhccC--c-hHHHHHHHHHHHHhCC
Confidence 355677888888887776554 333332 2221 345567776665432 4 6888889999999876
No 363
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=59.04 E-value=3.4e+02 Score=31.44 Aligned_cols=139 Identities=9% Similarity=0.112 Sum_probs=75.0
Q ss_pred CcHHHHHH----hhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH
Q 043116 239 GVCPRLVK----LLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNR 314 (482)
Q Consensus 239 ~~l~~L~~----ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 314 (482)
..++.++. ++.++++.++..+......+....+... ...++..|+..+-++ ...-...|..+|..++...+
T Consensus 431 ~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~----qqeVv~~Lvthi~sg-~~~ev~~aL~vL~~L~~~~~ 505 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYC----QQEVVGALVTHIGSG-NSQEVDAALDVLCELAEKNP 505 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHH----HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchh----HHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhccH
Confidence 44455444 4678889999988888777776554321 223677788888666 44344688999999987555
Q ss_pred HHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHH
Q 043116 315 EQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTV 386 (482)
Q Consensus 315 ~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~ 386 (482)
+.+..+. .++..+++.++.=+..-.+.....++.++..... .... +.....-.+-..+.+++++.+..
T Consensus 506 ~~l~~fa--~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~-~~s~-i~del~ivIRKQLss~~~~~K~~ 573 (1426)
T PF14631_consen 506 SELQPFA--TFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSS-SSSS-IQDELHIVIRKQLSSSNPKYKRI 573 (1426)
T ss_dssp HHHHHTH--HHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS----H-HHHHHHHHHHHHHT-SSHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcc-cchh-hHHHHHHHHHHhhcCCcHHHHHH
Confidence 5444432 2455555666554444444556666666542111 1111 11222333444566666655443
No 364
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=58.94 E-value=44 Score=21.22 Aligned_cols=34 Identities=15% Similarity=0.408 Sum_probs=29.4
Q ss_pred HHHHHHhchHHHHHHhhcC-CCHHHHHHHHHHHHH
Q 043116 414 AQLVEEAEGLEKIENLQSH-DNNDIHEMSVKILET 447 (482)
Q Consensus 414 ~~~l~~~~~~~~l~~l~~~-~~~~v~~~a~~~l~~ 447 (482)
.+.+.+++.-..+..+..+ +++++++.|..++.+
T Consensus 13 ~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~ 47 (53)
T PF08711_consen 13 VELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKK 47 (53)
T ss_dssp HHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHH
T ss_pred HHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 7778899988999999888 999999999999875
No 365
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=58.88 E-value=2.2e+02 Score=29.26 Aligned_cols=87 Identities=21% Similarity=0.077 Sum_probs=54.8
Q ss_pred chhchhhhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCC------cHHHHHhcCCHHHHHHhhcCCCChHHHH
Q 043116 16 PALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNS------PIEKVIQSGVVPRFVEFLMREDYPQLQF 89 (482)
Q Consensus 16 ~~~~~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~------~~~~~~~~g~~~~L~~ll~~~~~~~v~~ 89 (482)
|+.++.-.+..+.++.+++.++.+|++++..|+..+........+. +.+.+.. -...|.....+-..++.+.
T Consensus 37 e~lSEED~~lk~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrp--hy~~Lk~i~~~~~~~n~Kk 114 (878)
T KOG2005|consen 37 EDLSEEDLQLKGDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRP--HYGVLKEIYESMADSNLKK 114 (878)
T ss_pred hhccHHHHHhhhhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhcc--chhHHHHHHHhccCchhHh
Confidence 3444444555668999999999999999999999999887653211 1222211 1223333332222256788
Q ss_pred HHHHHHHHHhCCChH
Q 043116 90 EAARALTNIASGTSE 104 (482)
Q Consensus 90 ~a~~~L~~l~~~~~~ 104 (482)
..+.+|.-++....+
T Consensus 115 ~laDIlSvLamt~se 129 (878)
T KOG2005|consen 115 WLADILSVLAMTMSE 129 (878)
T ss_pred HHHHHHHHHheeecc
Confidence 888899888874433
No 366
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.17 E-value=67 Score=31.56 Aligned_cols=72 Identities=6% Similarity=-0.021 Sum_probs=59.7
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCC--CHHHHHHHHHHHHHHHH
Q 043116 325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCP--DPQIVTVCLIGLENILK 396 (482)
Q Consensus 325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~~l~~L~~l~~ 396 (482)
++..|.+-+.+.++.++..|+..|-.++.++...+...+.+.++++-++...+.. +.+|+.+++..|...-.
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~ 112 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQ 112 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHH
Confidence 4556666677788899999999999999998888888889999999999988754 56899999988877654
No 367
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=58.02 E-value=35 Score=29.43 Aligned_cols=77 Identities=14% Similarity=0.189 Sum_probs=54.7
Q ss_pred CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 043116 239 GVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQ 318 (482)
Q Consensus 239 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 318 (482)
...+.+...+.++++-++..++-++...... .... ..+..+...+.++ +..+++...|+|..++..+++...
T Consensus 120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--~~~~-----~~l~~~~~~~~d~-~~~vq~ai~w~L~~~~~~~~~~v~ 191 (213)
T PF08713_consen 120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRK--EDFD-----ELLEIIEALLKDE-EYYVQKAIGWALREIGKKDPDEVL 191 (213)
T ss_dssp GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--CHHH-----HHHHHHHHCTTGS--HHHHHHHHHHHHHHCTT-HHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--cCHH-----HHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHhCHHHHH
Confidence 4567788888999998888887776655543 1111 2344455556666 889999999999999998888887
Q ss_pred HHHHc
Q 043116 319 AVIDA 323 (482)
Q Consensus 319 ~l~~~ 323 (482)
.++..
T Consensus 192 ~~l~~ 196 (213)
T PF08713_consen 192 EFLQK 196 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77764
No 368
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=57.77 E-value=2.9e+02 Score=30.30 Aligned_cols=135 Identities=10% Similarity=0.106 Sum_probs=88.7
Q ss_pred hCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCC--HHHHHHHHHcCC
Q 043116 248 LGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGN--REQIQAVIDAGL 325 (482)
Q Consensus 248 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~~~~ 325 (482)
-++-.+.+|..|+.-|+--+...|.. +++...+..+--.|.+. +..||..+..+|-.+...+ ...+..+. ..+
T Consensus 296 YRDV~~~IRaiCiqeLgiWi~~yP~~---Fl~dsYLKYiGWtLsDk-~~~VRl~~lkaL~~L~e~~~~~~~L~lFt-sRF 370 (1048)
T KOG2011|consen 296 YRDVDPDIRAICIQELGIWIKSYPEI---FLSDSYLKYIGWTLSDK-NGTVRLRCLKALIKLYEKDEDKDKLELFT-SRF 370 (1048)
T ss_pred cccCchHHHHHHHHHHHHHHHhccHH---HhcchHHHHhcceeecC-ccHHHHHHHHHHHHHHhccccchHHHHHH-HHH
Confidence 35567899999999998777655543 66667788888888888 8999999999999998742 22233333 346
Q ss_pred hHHHHHHH-hcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHH
Q 043116 326 IGPIVNLL-QDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENI 394 (482)
Q Consensus 326 i~~L~~ll-~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l 394 (482)
=..++++. .+.+..|+...+..+......+ ++...-+.++.+++-+.++++...+...+..-
T Consensus 371 K~RIVeMadrd~~~~Vrav~L~~~~~~~~~g-------~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k 433 (1048)
T KOG2011|consen 371 KDRIVEMADRDRNVSVRAVGLVLCLLLSSSG-------LLSDKDILIVYSLIYDSNRRVAVAAGEFLYKK 433 (1048)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHhccc-------ccChhHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 66677777 3445555554444333332211 23334577788888888888777766655543
No 369
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=55.74 E-value=63 Score=22.53 Aligned_cols=34 Identities=18% Similarity=0.450 Sum_probs=30.0
Q ss_pred HHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 043116 414 AQLVEEAEGLEKIENLQSHDNNDIHEMSVKILET 447 (482)
Q Consensus 414 ~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~ 447 (482)
.+.+...+.-..+..|-.|+++++...|..++..
T Consensus 37 ~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~ 70 (76)
T cd00183 37 VEILKETRIGKKVNSLRKHSNEKIRKLAKALIKS 70 (76)
T ss_pred HHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 7778888888889999999999999999998874
No 370
>PRK09169 hypothetical protein; Validated
Probab=55.56 E-value=4.4e+02 Score=31.75 Aligned_cols=78 Identities=14% Similarity=0.133 Sum_probs=33.3
Q ss_pred cHHHHHHHhc--CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh
Q 043116 28 ILPTMVAGVW--SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN 105 (482)
Q Consensus 28 ~i~~l~~~l~--s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~ 105 (482)
.+..+++.+. .+++..+. ++..|...+... ......+-..++-..+-.+-+-++.+..+. ++..|..-....+..
T Consensus 164 ~v~~lLNalSKWP~~~~c~~-aa~~lA~~la~~-~~l~~al~~q~va~~lnalSKwp~~~~cr~-a~~~lA~rL~~~~~l 240 (2316)
T PRK09169 164 SFALLLNALSKWPDNTDCQT-AAEQLADRLASD-SRLLQAMDAQEVANALNALSKWPDSPRCRN-AAERLAERLADEPGL 240 (2316)
T ss_pred HHHHHHHHhccCCCchHHHH-HHHHHHHHhccC-HHHHHhcchHHHHHHHHHHhcCCCcHHHHH-HHHHHHHHHhcChHH
Confidence 4556666665 33344443 333333333332 233333333444444444445555333333 444444433334444
Q ss_pred HHH
Q 043116 106 TKV 108 (482)
Q Consensus 106 ~~~ 108 (482)
+..
T Consensus 241 ~~~ 243 (2316)
T PRK09169 241 LQS 243 (2316)
T ss_pred HHh
Confidence 433
No 371
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=55.27 E-value=45 Score=23.96 Aligned_cols=67 Identities=16% Similarity=0.187 Sum_probs=44.7
Q ss_pred HhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh----cCChhHHHHHHHHHH
Q 043116 278 INCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ----DAEFGTKKEAAWVIS 349 (482)
Q Consensus 278 ~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~----~~~~~~~~~a~~aL~ 349 (482)
.+..++.++..++.+..+.++|.....++.++.....+. +..| .+.++.++. +++..+...|..++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~----i~SG-W~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGEN----IKSG-WKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHH----HHhc-cHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 344577888888776668899999999999998643332 2333 555555554 456666666665543
No 372
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=53.80 E-value=2e+02 Score=27.19 Aligned_cols=110 Identities=12% Similarity=0.071 Sum_probs=64.7
Q ss_pred ChHHHHHHHcch-----h-hhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc----------cCChhHHHHHHH
Q 043116 156 ALIPLLAELNEH-----A-KLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR----------SNDEKVLTDACR 219 (482)
Q Consensus 156 ~i~~l~~~l~~~-----~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~----------~~~~~~~~~~l~ 219 (482)
.+|.++..+... . +.......+.....|..+..-........++|.++.++- .+.+.+|..++.
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ 290 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAAR 290 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHH
Confidence 466666666322 1 355566677777777777544444455778888887763 133688999999
Q ss_pred HHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChh--hHHHHHHHHhHh
Q 043116 220 ALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRL--VLTAALRTIGNI 266 (482)
Q Consensus 220 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~--v~~~a~~~L~~l 266 (482)
.+..++........ -+...++..+.+.+.++... ...-|+..|..+
T Consensus 291 ll~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 291 LLAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 99988854322211 12334555666666554322 344555555544
No 373
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=53.26 E-value=18 Score=27.23 Aligned_cols=42 Identities=26% Similarity=0.360 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHH
Q 043116 89 FEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVRE 131 (482)
Q Consensus 89 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~ 131 (482)
...+..+..++. .|+.-..+++.|+++.|+.+|.++|..+..
T Consensus 64 d~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 445677777877 788889999999999999999998877643
No 374
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=52.82 E-value=15 Score=19.50 Aligned_cols=14 Identities=7% Similarity=0.316 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhc
Q 043116 298 IKKEVCWIISNITA 311 (482)
Q Consensus 298 v~~~a~~~L~nl~~ 311 (482)
||..|+++|+++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 67889999998853
No 375
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=52.13 E-value=63 Score=27.83 Aligned_cols=120 Identities=17% Similarity=0.210 Sum_probs=45.1
Q ss_pred hHHHHHhcCchHHHHHHhcCCCc-----------------hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc
Q 043116 273 QTQCIINCGALRYLLGLLIHNHN-----------------KSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQD 335 (482)
Q Consensus 273 ~~~~l~~~~~i~~L~~ll~~~~~-----------------~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~ 335 (482)
..+.+.+.|++..++.+|..+.+ ..+-..+...|..++.+++++...+.+ -++.++..+..
T Consensus 35 rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~--~~~~l~~~~~~ 112 (207)
T PF01365_consen 35 RQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFK--HLDFLISIFMQ 112 (207)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHH--HHH-----HHC
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH--HHhHHHHHHHH
Confidence 34445566777777777754221 346678889999999888877666665 23323333332
Q ss_pred CChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhc
Q 043116 336 AEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVG 398 (482)
Q Consensus 336 ~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~ 398 (482)
.....-..+..++..+..+ +++-...+.+. .++.+++++.....+. .-+..|..++...
T Consensus 113 ~~~~~~~~~~d~l~~i~~d-N~~L~~~i~e~-~I~~~i~ll~~~gr~~--~~L~~L~~lc~~~ 171 (207)
T PF01365_consen 113 LQIGYGLGALDVLTEIFRD-NPELCESISEE-HIEKFIELLRKHGRQP--RYLDFLSSLCVCN 171 (207)
T ss_dssp CCH-TTHHHHHHHHHHHTT--------------------------------------------
T ss_pred hhccCCchHHHHHHHHHHC-cHHHHHHhhHH-HHHHHHHHHHHcCCCh--HHHHHHhhhcccC
Confidence 2222223467777777774 55555554444 4888888887644332 2456677776543
No 376
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=51.64 E-value=1.4e+02 Score=24.67 Aligned_cols=75 Identities=12% Similarity=0.068 Sum_probs=55.1
Q ss_pred HHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccC
Q 043116 152 LSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADG 227 (482)
Q Consensus 152 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~ 227 (482)
...+-+...+..+....|..+....+.++.+.... ..-.......++|.+..+|.+..+.....++..+..+...
T Consensus 25 W~~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~-~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~ 99 (164)
T PF13925_consen 25 WRRNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKP-EKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKK 99 (164)
T ss_pred HhcCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCc-CcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 34455666666665667777777777777654444 2355556678999999999999999999999999887743
No 377
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=51.16 E-value=14 Score=22.33 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=26.3
Q ss_pred HHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHH
Q 043116 220 ALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTI 263 (482)
Q Consensus 220 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L 263 (482)
+|..+...++.. +....+...+...+.++++.||..|+.+|
T Consensus 2 ~l~~iv~~dp~l---l~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTL---LDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCccc---cchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 344555444421 22234567778888999999999987653
No 378
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=50.88 E-value=1.1e+02 Score=23.19 Aligned_cols=80 Identities=16% Similarity=0.069 Sum_probs=54.7
Q ss_pred CchHHHHHHhcCCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc--CChhHHHHHHHHHHHhhcCC
Q 043116 281 GALRYLLGLLIHNH---NKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQD--AEFGTKKEAAWVISNATSGG 355 (482)
Q Consensus 281 ~~i~~L~~ll~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~~~~~a~~aL~~l~~~~ 355 (482)
|++..+-+.+.+.+ +..-|+.+..++..+..-....+. .+.|.++..|++ +.++++..++.+...+...-
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~-----~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS-----SALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 56667777776653 445688888888888762222121 256677777774 47789999999999998766
Q ss_pred CHHHHHHHHH
Q 043116 356 THEQIKHLVR 365 (482)
Q Consensus 356 ~~~~~~~l~~ 365 (482)
+.+....+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T smart00802 86 KEEELGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 6666665544
No 379
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=50.07 E-value=2.2e+02 Score=26.70 Aligned_cols=191 Identities=7% Similarity=0.009 Sum_probs=94.7
Q ss_pred ChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccC--CcHHHH
Q 043116 156 ALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADG--TNDKIQ 233 (482)
Q Consensus 156 ~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~--~~~~~~ 233 (482)
++..+..++.+..++......+.++..=+..- .......++..+..-+.+..+.+|..-+.+++..... +....
T Consensus 23 i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~- 98 (339)
T PF12074_consen 23 IVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSL- 98 (339)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHH-
Confidence 45667777766666666666555554333221 2223367788888888888888999988888887741 11111
Q ss_pred HHHHhCcHHHHHHhh----CCCChhhH---HHHHHHHhHhhcCChhhHHH-------HH-hc--C--chHHHHHHhcCCC
Q 043116 234 AVIEAGVCPRLVKLL----GHRSRLVL---TAALRTIGNIVTGDDFQTQC-------II-NC--G--ALRYLLGLLIHNH 294 (482)
Q Consensus 234 ~~~~~~~l~~L~~ll----~~~~~~v~---~~a~~~L~~l~~~~~~~~~~-------l~-~~--~--~i~~L~~ll~~~~ 294 (482)
-.-..+++.|...+ .++.+..+ ..++.++..+.......... +. +. . .-+.+..-+ .
T Consensus 99 -~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl--~- 174 (339)
T PF12074_consen 99 -KFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL--A- 174 (339)
T ss_pred -HHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc--C-
Confidence 11124566666665 33332211 11222222111111111000 00 00 0 011222221 2
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhhcC
Q 043116 295 NKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDA--EFGTKKEAAWVISNATSG 354 (482)
Q Consensus 295 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~~~~~a~~aL~~l~~~ 354 (482)
+.+-..-.+.++..+..+.+.....-....+-..++.++-+. .+++|+.|..++..+...
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~ 236 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYAS 236 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence 222333344444444432222111111223556677777777 899999999999999875
No 380
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=49.94 E-value=1e+02 Score=30.30 Aligned_cols=144 Identities=12% Similarity=0.094 Sum_probs=80.4
Q ss_pred CchHHHHHHhcCCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCH
Q 043116 281 GALRYLLGLLIHNH---NKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTH 357 (482)
Q Consensus 281 ~~i~~L~~ll~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~ 357 (482)
++...|..+|.... ++.+|...+.+|.-+-..+ .+.-..++..+++++..++...|..+..-+.....+.+.
T Consensus 16 ~FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~-----~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~ 90 (616)
T KOG2229|consen 16 NFPSELKDLLRTNHTVLPPELREKIVKALILLRNKN-----LIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINK 90 (616)
T ss_pred hhhHHHHHHHHhccccCCHHHHHHHHHHHHHHhccC-----cCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHh
Confidence 45566777776643 6788888888887775421 111223566777788878777776554433333332111
Q ss_pred HHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHH
Q 043116 358 EQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDI 437 (482)
Q Consensus 358 ~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v 437 (482)
.....=.+...-..+..++..+++.--..++..+..+.+..-+. .+..+..+..-.-|.++.|
T Consensus 91 ~~kn~klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr~iW~-----------------d~~tV~i~~~acf~~~~ki 153 (616)
T KOG2229|consen 91 KHKNDKLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYKRNIWN-----------------DSKTVNIITTACFSKVPKI 153 (616)
T ss_pred hcccchHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcccc-----------------cchhHHHHHHHHhccCcHH
Confidence 11111112223456778888888765556666666666544433 1222233333345677887
Q ss_pred HHHHHHHHH
Q 043116 438 HEMSVKILE 446 (482)
Q Consensus 438 ~~~a~~~l~ 446 (482)
.-.+...+-
T Consensus 154 ~vs~l~FfL 162 (616)
T KOG2229|consen 154 LVSGLRFFL 162 (616)
T ss_pred HHhhhHHhc
Confidence 766665553
No 381
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.86 E-value=3.1e+02 Score=28.31 Aligned_cols=289 Identities=11% Similarity=0.124 Sum_probs=145.9
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHH
Q 043116 29 LPTMVAGV-WSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTK 107 (482)
Q Consensus 29 i~~l~~~l-~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 107 (482)
++.+-+.| .+.|+..+.+|=.+|..++.. ++ .+..-.-++..+++|--+..|..+|..+..+.. ...
T Consensus 7 Le~lCk~LY~s~D~~~R~~AE~~L~e~s~s--pe---------clskCqlll~~gs~pYs~mlAst~L~Klvs~~t-~lp 74 (1082)
T KOG1410|consen 7 LESLCKDLYESTDPTARHRAEKALAELSES--PE---------CLSKCQLLLERGSYPYSQMLASTCLMKLVSRKT-PLP 74 (1082)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHccC--HH---------HHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCC-CCc
Confidence 34444444 477899999999999888765 22 234444455666656667778888888776332 111
Q ss_pred HHHhCCChHHHHHhhCCCCHHH----HHHHHHHHHHhhCCChh--hHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHH
Q 043116 108 VAIDHGAVPIFVKLLASPSDDV----REQAVWALGNVAGDSSR--CRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLS 181 (482)
Q Consensus 108 ~~~~~g~i~~L~~ll~~~~~~~----~~~a~~~L~~l~~~~~~--~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~ 181 (482)
.-....+-..++..+..+.|.+ ...-+..++.+..-... .++...=.+.+..+.+.+ +..+.+--..++.+|.
T Consensus 75 l~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl-~~~~ve~~~igv~iLs 153 (1082)
T KOG1410|consen 75 LEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFL-QMDNVEHCIIGVQILS 153 (1082)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHh-ccCchHHHHHHHHHHH
Confidence 1111123355666666544433 33334444444421110 011111123455556666 3333444444556666
Q ss_pred HhhcCCCCC----Ch---h---------hhhhHHHHHHHHhccC------C---hhHHHHHHHHHHHhc---------c-
Q 043116 182 NFCRGKPQP----PF---N---------QIRPALRVLAQLIRSN------D---EKVLTDACRALAYLA---------D- 226 (482)
Q Consensus 182 ~L~~~~~~~----~~---~---------~~~~~~~~L~~ll~~~------~---~~~~~~~l~~L~~l~---------~- 226 (482)
.|..+-... .. . ....++..-+.+++.. | ......++..-.+.. .
T Consensus 154 qLvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DE 233 (1082)
T KOG1410|consen 154 QLVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDE 233 (1082)
T ss_pred HHHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhcccccccccccc
Confidence 665432110 00 0 0112222223333311 1 112222222211111 0
Q ss_pred ---------CCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC------ChhhHHHHHhcCchHHHHHHhc
Q 043116 227 ---------GTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTG------DDFQTQCIINCGALRYLLGLLI 291 (482)
Q Consensus 227 ---------~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~------~~~~~~~l~~~~~i~~L~~ll~ 291 (482)
.+......+.+...++.+..+..+-.+.....++.||..++.- +.+..+.+ ...++-...++.
T Consensus 234 ssed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl--~~Lv~Gvk~il~ 311 (1082)
T KOG1410|consen 234 SSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYL--QHLVEGVKRILE 311 (1082)
T ss_pred ccccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHH--HHHHHHHHHHHh
Confidence 1223344466677888888998888888889999999988752 22332222 134555566666
Q ss_pred CCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 043116 292 HNH---NKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ 334 (482)
Q Consensus 292 ~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~ 334 (482)
.+. |+.--.+-|..|+.+-. .-+..+++.-...+.+++++.
T Consensus 312 np~~LsD~~nyHeFCRllaRlkt--NYQL~ELv~v~~Y~e~irLiA 355 (1082)
T KOG1410|consen 312 NPQGLSDPANYHEFCRLLARLKT--NYQLGELVKVECYPEVIRLIA 355 (1082)
T ss_pred CCcCCCCcchHHHHHHHHHHHHh--hhhhHhhhccCCcHHHHHHHH
Confidence 542 45555666777766632 333455666556666666653
No 382
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=48.13 E-value=31 Score=18.64 Aligned_cols=14 Identities=7% Similarity=0.404 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHh
Q 043116 297 SIKKEVCWIISNIT 310 (482)
Q Consensus 297 ~v~~~a~~~L~nl~ 310 (482)
.+|..|+++|+++.
T Consensus 2 ~vR~~aa~aLg~~~ 15 (30)
T smart00567 2 LVRHEAAFALGQLG 15 (30)
T ss_pred HHHHHHHHHHHHcC
Confidence 47899999999983
No 383
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=47.53 E-value=1.2e+02 Score=24.32 Aligned_cols=83 Identities=13% Similarity=0.087 Sum_probs=47.5
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCC
Q 043116 112 HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPP 191 (482)
Q Consensus 112 ~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~ 191 (482)
..+-..+..+|.+++++++..|+.||... ..+..... -..|-+++ + +...+..+..+. +..+.....
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~--k~~~l~pY------~d~L~~Ll-d---d~~frdeL~~f~-~~~~~~~I~ 82 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTW--KDPYLTPY------KDNLENLL-D---DKTFRDELTTFN-LSDESSVIE 82 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CcHHHHhH------HHHHHHHc-C---cchHHHHHHhhc-ccCCcCCCC
Confidence 34557788999999999999999999886 32221111 12344444 2 122222222221 222223344
Q ss_pred hhhhhhHHHHHHHHhc
Q 043116 192 FNQIRPALRVLAQLIR 207 (482)
Q Consensus 192 ~~~~~~~~~~L~~ll~ 207 (482)
...-..++|.++.+|-
T Consensus 83 ~ehR~~l~pvvlRILy 98 (141)
T PF07539_consen 83 EEHRPELMPVVLRILY 98 (141)
T ss_pred HHHHhHHHHHHHHHHH
Confidence 5555788888888774
No 384
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=47.41 E-value=2.6e+02 Score=26.68 Aligned_cols=272 Identities=11% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 043116 73 PRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVL 152 (482)
Q Consensus 73 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 152 (482)
+.++...+.+. .-+..|...+.+...+-|+... ..+.+-+++..+.+..+|.+|+.-|-.+|.++.-.+
T Consensus 28 ~~il~~~k~~~--k~k~lasq~ip~~fk~fp~la~-----~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~r---- 96 (460)
T KOG2213|consen 28 EGILKAVKGTS--KEKRLASQFIPRFFKHFPSLAD-----EAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSR---- 96 (460)
T ss_pred HHHHHHhhcch--HHHHHHHHHHHHHHhhCchhhh-----HHHHhhhccccccchhhHHHHHhccchhccCchhhh----
Q ss_pred HhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHH-hccCCcHH
Q 043116 153 SQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAY-LADGTNDK 231 (482)
Q Consensus 153 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~-l~~~~~~~ 231 (482)
+.+.+.++|+ ..-+..|..-....|..+++.++..|.. +..-..+.
T Consensus 97 ---v~d~l~qLLn------------------------------k~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~ 143 (460)
T KOG2213|consen 97 ---VNDVLVQLLN------------------------------KASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEV 143 (460)
T ss_pred ---hHHHHHHHHH------------------------------HHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHH
Q ss_pred HHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC--hhhHHHHHhcCchHHHHHH--hcCCCchhHHHHHHHHHH
Q 043116 232 IQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGD--DFQTQCIINCGALRYLLGL--LIHNHNKSIKKEVCWIIS 307 (482)
Q Consensus 232 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~l~~~~~i~~L~~l--l~~~~~~~v~~~a~~~L~ 307 (482)
...-++..++.-+-..|.+-..+--...+..|+++.... ....+..--...+..+-.+ ..-. |.+....-..++.
T Consensus 144 L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeLa~~~e~~a~ldaf~~s-D~d~VdRfisCl~ 222 (460)
T KOG2213|consen 144 LTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARLQELAEEQEGLADLDAFNVS-DADYVDRFISCLL 222 (460)
T ss_pred hhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhhhhccCcccCC-ChHHHHHHHHHHH
Q ss_pred HHhc-----CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCC-----
Q 043116 308 NITA-----GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP----- 377 (482)
Q Consensus 308 nl~~-----~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~----- 377 (482)
.-+- ......-..+...++|. -..-...+.+...+.+|..++.+.+.+.+.. .++.++++|.
T Consensus 223 ~AvPfFargapSskf~~y~n~~~ip~---~fdkl~e~rkL~lLK~lAEMss~ttaq~a~q-----~Lpsi~elLk~yMpa 294 (460)
T KOG2213|consen 223 MAVPFFARGAPSSKFVEYLNKHIIPH---HFDKLTEERKLDLLKALAEMSSYTTAQAARQ-----MLPSIVELLKEYMPA 294 (460)
T ss_pred HhhhhhhcCCchhHHHHHHHhhhccc---ccccchHHHHHHHHHHHHHhCccchHHHHHH-----HHHHHHHHHHHhccc
Q ss_pred -CCCHHHHHHHHHHHHHHHHh
Q 043116 378 -CPDPQIVTVCLIGLENILKV 397 (482)
Q Consensus 378 -~~~~~v~~~~l~~L~~l~~~ 397 (482)
..-++....-++++.+++..
T Consensus 295 ~kt~ee~~fsyvEClly~~h~ 315 (460)
T KOG2213|consen 295 PKTGEEMQFSYVECLLYALHH 315 (460)
T ss_pred CCccHHHHHHHHHHHHHHHHH
No 385
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=47.00 E-value=59 Score=24.65 Aligned_cols=76 Identities=12% Similarity=0.039 Sum_probs=49.7
Q ss_pred hhhhhhhhcccchhc-hhhhhhhccHHHH---HHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhc
Q 043116 5 FLQSQQFQISAPALS-LNLQSKFEILPTM---VAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLM 80 (482)
Q Consensus 5 ~~~~~~~~~~~~~~~-~~~~~~~~~i~~l---~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~ 80 (482)
.+|++.+.+++...+ ..+.....-+..+ .+.+.+.+......++..|..++.++..++-..+.+..++..+..++.
T Consensus 27 ~lQnylR~Q~~~~~s~nlV~~~~~ll~~l~~~~~~~~~~~~~~~~q~~~tL~E~iQGPC~eNQ~~l~~s~~~~~i~~lL~ 106 (109)
T PF08454_consen 27 DLQNYLRQQPNNKNSYNLVSETVDLLDSLQEFGKDINSDNIELIIQCFDTLTEFIQGPCIENQIALANSKFLDIINDLLS 106 (109)
T ss_pred HHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCHHhHHHHHHccHHHHHHHHHh
Confidence 466777777765433 2223233333333 334455667777888999999999876677777778888888887775
No 386
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.80 E-value=45 Score=32.72 Aligned_cols=73 Identities=16% Similarity=0.072 Sum_probs=56.8
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC-CChHHHHHHHHHHHHHh
Q 043116 27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMRE-DYPQLQFEAARALTNIA 99 (482)
Q Consensus 27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~v~~~a~~~L~~l~ 99 (482)
.++..|.+.+++.++.+++.|+..|--+....+...-..+.+.++++-++...+.. -...||..++..|-.-.
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~ 111 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQ 111 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHH
Confidence 46778888888888999999999888777766444455788999999999998766 43688988877765543
No 387
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=46.54 E-value=1.3e+02 Score=22.75 Aligned_cols=80 Identities=18% Similarity=0.084 Sum_probs=55.3
Q ss_pred CchHHHHHHhcC---CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc--CChhHHHHHHHHHHHhhcCC
Q 043116 281 GALRYLLGLLIH---NHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQD--AEFGTKKEAAWVISNATSGG 355 (482)
Q Consensus 281 ~~i~~L~~ll~~---~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~~~~~a~~aL~~l~~~~ 355 (482)
|++..+-+.+.+ ..+...|+.+..++..+..-....+. .+.|.++..|+. +.++++..++.+...+...-
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 556666666666 33677889999999998862222222 356677777774 45689999999999998876
Q ss_pred CHHHHHHHHH
Q 043116 356 THEQIKHLVR 365 (482)
Q Consensus 356 ~~~~~~~l~~ 365 (482)
+++....+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T PF08064_consen 86 DEEDLGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 7666555444
No 388
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=45.04 E-value=2.2e+02 Score=25.19 Aligned_cols=76 Identities=22% Similarity=0.263 Sum_probs=47.4
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHH--------------------------HHHHHHH--cCChHHHHhcC
Q 043116 325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHE--------------------------QIKHLVR--EGCVKPLCDLL 376 (482)
Q Consensus 325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~--------------------------~~~~l~~--~~~l~~L~~ll 376 (482)
+-..++.+++++++.++..++..+..+....++. ....|.. .+.++.|+..+
T Consensus 44 lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l 123 (239)
T PF11935_consen 44 LKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVL 123 (239)
T ss_dssp HHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 4445666667777888888887777664311000 0112222 36788888888
Q ss_pred CCCC--HHHHHHHHHHHHHHHHhchh
Q 043116 377 PCPD--PQIVTVCLIGLENILKVGEA 400 (482)
Q Consensus 377 ~~~~--~~v~~~~l~~L~~l~~~~~~ 400 (482)
..+. +.+...++..|..+++.-+.
T Consensus 124 ~~~~i~~~~~~a~insL~~Iak~RP~ 149 (239)
T PF11935_consen 124 QSPHISSPLLTAIINSLSNIAKQRPQ 149 (239)
T ss_dssp C-TT--HHHHHHHHHHHHHHHHHSGG
T ss_pred hhcccchHHHHHHHHHHHHHHHHhhH
Confidence 7665 67888888888888876544
No 389
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=44.19 E-value=1.3e+02 Score=25.32 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=51.6
Q ss_pred HHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 043116 242 PRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVI 321 (482)
Q Consensus 242 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 321 (482)
+.+...+.++++-++..++.++........ ... ..++.+-.++.+. +..|++...|+|..++...++....++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~~-~~~-----~~l~~~~~~~~d~-~~~Vqkav~w~L~~~~~~~~~~v~~~l 180 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKET-DFD-----LLLEIIERLLHDE-EYFVQKAVGWALREYGKKDPERVIAFL 180 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhcc-cHH-----HHHHHHHHhCCCH-HHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 677788888998888888877776665311 111 1233444445556 889999999999999987777665555
Q ss_pred H
Q 043116 322 D 322 (482)
Q Consensus 322 ~ 322 (482)
+
T Consensus 181 ~ 181 (197)
T cd06561 181 E 181 (197)
T ss_pred H
Confidence 4
No 390
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.93 E-value=4.8e+02 Score=30.06 Aligned_cols=191 Identities=12% Similarity=0.084 Sum_probs=104.6
Q ss_pred hHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcc---hhhhhHHHHHHHH
Q 043116 103 SENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNE---HAKLSMLRTATWT 179 (482)
Q Consensus 103 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~---~~~~~~~~~a~~~ 179 (482)
.+.+..+++.|.+..+...+++.++.+|..|.|++..+-.+.....+.....-.+..++.+... .+++.+.......
T Consensus 1429 v~~r~~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF 1508 (1758)
T KOG1791|consen 1429 VEIRLIFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALF 1508 (1758)
T ss_pred hhcchhhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHH
Confidence 3444477888999999999999999999999888877664433321222222223344444422 2233332222222
Q ss_pred ---HHHhhcCCCCCChhhh-----------hhHHHHHHHHhccCCh---hHHHHHHHHHHHhccCCcHHHHHHHHhCcHH
Q 043116 180 ---LSNFCRGKPQPPFNQI-----------RPALRVLAQLIRSNDE---KVLTDACRALAYLADGTNDKIQAVIEAGVCP 242 (482)
Q Consensus 180 ---L~~L~~~~~~~~~~~~-----------~~~~~~L~~ll~~~~~---~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~ 242 (482)
...++..+........ -..+|.+-.++.+..+ ..+...+..+.......+ ..+.....+.+.
T Consensus 1509 ~A~~~~ill~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks~~-D~ql~~~~~~~~ 1587 (1758)
T KOG1791|consen 1509 IAFFSDILLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKSCP-DYQLLQIRNIFE 1587 (1758)
T ss_pred HHHHHHHHcCCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhcCch-hhhHHhhcCcce
Confidence 2222222211111111 1233344444444332 245555555555444443 334455667777
Q ss_pred HHHHhhCCC--ChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCC
Q 043116 243 RLVKLLGHR--SRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNH 294 (482)
Q Consensus 243 ~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 294 (482)
.+++...++ +...+.-.+.+|++-+.........+-..|+..++..++.++.
T Consensus 1588 ~~lsf~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~~ 1641 (1758)
T KOG1791|consen 1588 TLLSFYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSSF 1641 (1758)
T ss_pred EeehhhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhccccc
Confidence 777777663 3445556677777766644445555666799999999999874
No 391
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=43.42 E-value=81 Score=25.01 Aligned_cols=63 Identities=19% Similarity=0.297 Sum_probs=43.0
Q ss_pred hHHHHHHHHhccCC----hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHH
Q 043116 197 PALRVLAQLIRSND----EKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTI 263 (482)
Q Consensus 197 ~~~~~L~~ll~~~~----~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L 263 (482)
.+++.+.+.+.... .+....++.++......-+ ...+.+.++++.+..++.+++ .+..|+.+|
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 34444555554322 7888999999999886543 345677789999999995444 577777765
No 392
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=42.53 E-value=3.9e+02 Score=27.26 Aligned_cols=143 Identities=11% Similarity=0.017 Sum_probs=88.2
Q ss_pred HHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH--HHHH
Q 043116 242 PRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNRE--QIQA 319 (482)
Q Consensus 242 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~--~~~~ 319 (482)
..++.-..+-++.+|..|...|+.-+..-|.. +.+-.++...--.|.+. +..+|.....++-.++...|. .+..
T Consensus 278 svfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~y---f~k~~~lry~GW~LSDn-~~~vRl~v~Kil~~L~s~~p~~d~ir~ 353 (740)
T COG5537 278 SVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDY---FRKILGLRYNGWSLSDN-HEGVRLLVSKILLFLCSRIPHTDAIRR 353 (740)
T ss_pred HHHhhhccchhHHHHHHHHHHHHHHHhcchHH---HHhhhcccccccccccc-hHHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 34445556677888888888888776655554 33334677777778888 889999999999999984433 3334
Q ss_pred HHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 043116 320 VIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILK 396 (482)
Q Consensus 320 l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~ 396 (482)
+++ .+...+++++..+..-||..++..++.+...|- ++...+..+..++-+..|+-+....+.+.++++
T Consensus 354 f~e-RFk~rILE~~r~D~d~VRi~sik~l~~lr~lg~-------L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK 422 (740)
T COG5537 354 FVE-RFKDRILEFLRTDSDCVRICSIKSLCYLRILGV-------LSSSEILIVSSCMLDIIPDSRENIVESVESICK 422 (740)
T ss_pred HHH-HHHHHHHHHHhhccchhhHHHHHHHHHHHHhcc-------cchhHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 443 466677777775544488888888877755432 122234444444444444322223344444443
No 393
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=42.04 E-value=97 Score=24.98 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=19.6
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHHhhcC
Q 043116 326 IGPIVNLLQDAEFGTKKEAAWVISNATSG 354 (482)
Q Consensus 326 i~~L~~ll~~~~~~~~~~a~~aL~~l~~~ 354 (482)
+..|+++|.+++.++...|+.+|.+....
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~TlLv 124 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTLLV 124 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--TT
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhHHH
Confidence 77888888888888888888888877553
No 394
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=40.83 E-value=1.2e+02 Score=26.04 Aligned_cols=94 Identities=12% Similarity=0.180 Sum_probs=32.8
Q ss_pred hhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Q 043116 254 LVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLL 333 (482)
Q Consensus 254 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 333 (482)
.+...++..|..++.++......+.+. ++.+...+... ....-..+..++..+..++++....+.+. .+..++.++
T Consensus 76 ~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~-~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll 151 (207)
T PF01365_consen 76 ELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQL-QIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCC-CH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHh-hccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHH
Confidence 467889999999999888777766543 33333333332 11222356777888877777766666554 488888888
Q ss_pred hcCChhHHHHHHHHHHHhhc
Q 043116 334 QDAEFGTKKEAAWVISNATS 353 (482)
Q Consensus 334 ~~~~~~~~~~a~~aL~~l~~ 353 (482)
.....+ ..-+..|..++.
T Consensus 152 ~~~gr~--~~~L~~L~~lc~ 169 (207)
T PF01365_consen 152 RKHGRQ--PRYLDFLSSLCV 169 (207)
T ss_dssp --------------------
T ss_pred HHcCCC--hHHHHHHhhhcc
Confidence 753222 223444444443
No 395
>PLN03205 ATR interacting protein; Provisional
Probab=40.22 E-value=3.4e+02 Score=25.96 Aligned_cols=160 Identities=14% Similarity=0.174 Sum_probs=93.9
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHHhcc---CCcHHHHHHHHhCcHHH---HHHhh-CCCChhhHHHHHHHHhHhhc
Q 043116 196 RPALRVLAQLIRSNDEKVLTDACRALAYLAD---GTNDKIQAVIEAGVCPR---LVKLL-GHRSRLVLTAALRTIGNIVT 268 (482)
Q Consensus 196 ~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~---~~~~~~~~~~~~~~l~~---L~~ll-~~~~~~v~~~a~~~L~~l~~ 268 (482)
..++..|+.+..-++.-+...+++.|..+.+ ++....+.-++.+.+.. +.+.- .+..+.++..|+.++.-+..
T Consensus 322 qtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlm 401 (652)
T PLN03205 322 KSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVM 401 (652)
T ss_pred HHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhh
Confidence 5677777777777777777777777765553 23333334444444332 22221 34566788999888877765
Q ss_pred CChh--hHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH---------------------HcC-
Q 043116 269 GDDF--QTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVI---------------------DAG- 324 (482)
Q Consensus 269 ~~~~--~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~---------------------~~~- 324 (482)
.... ..+.+...-+++.+-.+|+...-..|++++...+--+.. +|.....+. ..|
T Consensus 402 ssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN-CpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~f 480 (652)
T PLN03205 402 STDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN-CPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAF 480 (652)
T ss_pred ccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc-CcHHHHHHhcCCccccccccccccccccccHHHH
Confidence 4432 233454556788899999887567899988754433321 111111111 011
Q ss_pred --ChHHHHHHHh-----cCChhHHHHHHHHHHHhhcCCC
Q 043116 325 --LIGPIVNLLQ-----DAEFGTKKEAAWVISNATSGGT 356 (482)
Q Consensus 325 --~i~~L~~ll~-----~~~~~~~~~a~~aL~~l~~~~~ 356 (482)
++.-|-+.+. ..+.++++.++..|..++..|.
T Consensus 481 SsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk 519 (652)
T PLN03205 481 GKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGN 519 (652)
T ss_pred HHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCC
Confidence 2333444443 2467888889998888887653
No 396
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=39.04 E-value=2.2e+02 Score=23.41 Aligned_cols=78 Identities=14% Similarity=0.193 Sum_probs=52.1
Q ss_pred HHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHH-HhcCCC-chhHHHHHHHHHHHHhc
Q 043116 234 AVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLG-LLIHNH-NKSIKKEVCWIISNITA 311 (482)
Q Consensus 234 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~-ll~~~~-~~~v~~~a~~~L~nl~~ 311 (482)
.+++..+.+.+.+.+.++++.+-..+++++..+........+.-++ -+++.++. +++++. ...-|..+..++..++.
T Consensus 68 ~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele-~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 68 NLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE-VFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 4556677788888887777889999999999998643332222221 24455555 666552 24677778899999886
Q ss_pred C
Q 043116 312 G 312 (482)
Q Consensus 312 ~ 312 (482)
.
T Consensus 147 ~ 147 (168)
T PF12783_consen 147 D 147 (168)
T ss_pred C
Confidence 4
No 397
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=38.79 E-value=1.1e+02 Score=28.63 Aligned_cols=61 Identities=25% Similarity=0.380 Sum_probs=42.2
Q ss_pred CCcHHHHHhcC--CHHHHHHhhcCCC--ChHHHHHHHHHHHHHhCCChHhHHHHH------hCCChHHHHH
Q 043116 60 NSPIEKVIQSG--VVPRFVEFLMRED--YPQLQFEAARALTNIASGTSENTKVAI------DHGAVPIFVK 120 (482)
Q Consensus 60 ~~~~~~~~~~g--~~~~L~~ll~~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~------~~g~i~~L~~ 120 (482)
......++..+ ++..|+++++.++ ...++..|+.+|..++.+.....+.+. .+|++..+++
T Consensus 253 ~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGiL~~llR 323 (329)
T PF06012_consen 253 SQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGILPQLLR 323 (329)
T ss_pred HHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcccHHHHHH
Confidence 34456666555 9999999998654 258999999999999986655544332 2455555554
No 398
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=38.02 E-value=9.8e+02 Score=30.63 Aligned_cols=248 Identities=10% Similarity=0.058 Sum_probs=122.6
Q ss_pred ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHH--hCcHHHHHHhhCCCChh-------hHHHHHH
Q 043116 191 PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIE--AGVCPRLVKLLGHRSRL-------VLTAALR 261 (482)
Q Consensus 191 ~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~--~~~l~~L~~ll~~~~~~-------v~~~a~~ 261 (482)
...+..++++.+.++..++...-+...+..|..+....+. ..+.+ ..++..+...+.+...+ .....+.
T Consensus 1027 ~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~~--~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~ 1104 (3550)
T KOG0889|consen 1027 KLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMPS--LWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILM 1104 (3550)
T ss_pred ccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhchH--HHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHH
Confidence 3345567777777777776666666666666655554442 22222 24566666666542111 1122222
Q ss_pred HHhHhhcCCh--hhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--cCC--hHHHHHHHhc
Q 043116 262 TIGNIVTGDD--FQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVID--AGL--IGPIVNLLQD 335 (482)
Q Consensus 262 ~L~~l~~~~~--~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~~--i~~L~~ll~~ 335 (482)
-+...+..+. ...+.-...+++..++.-+.++ +..||+.+...|.+++..+...+..+++ ..+ +|....-+..
T Consensus 1105 ~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~np-N~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~ 1183 (3550)
T KOG0889|consen 1105 DILRVIFIDELAEEERAKSAMNVFSPLVLELFNP-NSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRA 1183 (3550)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccccccc
Confidence 1111111111 1111112236778888888888 8899999999999998733111222221 111 1222222233
Q ss_pred CChhHHHHHHHHHHHhhcCCC------HHHHHHHHHcCC-----hHH---HHhcCCCCC----HHHHHHHHHHHHHHHHh
Q 043116 336 AEFGTKKEAAWVISNATSGGT------HEQIKHLVREGC-----VKP---LCDLLPCPD----PQIVTVCLIGLENILKV 397 (482)
Q Consensus 336 ~~~~~~~~a~~aL~~l~~~~~------~~~~~~l~~~~~-----l~~---L~~ll~~~~----~~v~~~~l~~L~~l~~~ 397 (482)
.....+..-+.++..++..++ .+........+. -.. +.......+ ..++..|.+++...+..
T Consensus 1184 ~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~ 1263 (3550)
T KOG0889|consen 1184 LPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKL 1263 (3550)
T ss_pred CCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhc
Confidence 344455555555555554332 111111111000 011 222221111 23577777777777655
Q ss_pred chhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043116 398 GEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCG 451 (482)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 451 (482)
.+.... +-.+++..+ +..+-.-++.+.+++.+.+...+......
T Consensus 1264 ~d~~~~-----~~~~~r~ki-----i~v~fk~l~~~~~Ei~~~~~~~l~~v~~~ 1307 (3550)
T KOG0889|consen 1264 SDFRTP-----QHAELREKI-----IAVFFKSLYKRSSELIEVALEGLRKVLAQ 1307 (3550)
T ss_pred ccccch-----hhhhhhhHH-----HHHHHHHHcCChHHHHHHHHHHHHhhhhc
Confidence 444321 122334433 56666778888899988887777655444
No 399
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=37.96 E-value=2.2e+02 Score=23.07 Aligned_cols=101 Identities=15% Similarity=0.133 Sum_probs=50.2
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHH
Q 043116 198 ALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCI 277 (482)
Q Consensus 198 ~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l 277 (482)
-...++.+|..+...-....+..|.+=..-.-+. ..-+..+++..++.-=.....--+..|+..|+.|..+.
T Consensus 23 Qt~~lielLk~~~~~~~~~lldLL~~RV~PGVD~-AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGY------- 94 (154)
T PF11791_consen 23 QTAELIELLKNPPAGEEAFLLDLLTNRVPPGVDE-AAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGY------- 94 (154)
T ss_dssp HHHHHHHHHHS--TT-HHHHHHHHHHSS--TT-H-HHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SST-------
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHhcCCCCCCh-HHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCC-------
Confidence 3445666666555444444455554433111111 12344445554444322222234566788887776422
Q ss_pred HhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 043116 278 INCGALRYLLGLLIHNHNKSIKKEVCWIISNITA 311 (482)
Q Consensus 278 ~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 311 (482)
-+..|+.+|.+. +..+...|+.+|.+...
T Consensus 95 ----NV~~LI~~L~~~-d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 95 ----NVQPLIDLLKSD-DEELAEEAAEALKNTLL 123 (154)
T ss_dssp ----THHHHHHGG--G--TTTHHHHHHHHHT--T
T ss_pred ----cHHHHHHHHcCC-cHHHHHHHHHHHHhhHH
Confidence 145799999888 88999999999988765
No 400
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=37.90 E-value=1.9e+02 Score=22.25 Aligned_cols=65 Identities=14% Similarity=0.125 Sum_probs=40.7
Q ss_pred cHHHHHHhhC-CCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHh-cCCCchhH-HHHHHHHHHHHhc
Q 043116 240 VCPRLVKLLG-HRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLL-IHNHNKSI-KKEVCWIISNITA 311 (482)
Q Consensus 240 ~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~~v-~~~a~~~L~nl~~ 311 (482)
++|.+...+. +..++.+..+.-+++.++...+-. . .++..+++.+ .+. ...- .+.+..++..++.
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~-~-----~~l~~l~~~i~~~~-~~~~~~~~~l~~L~~l~q 74 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS-D-----EVLNALMESILKNW-TQETVQRQALICLIVLCQ 74 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc-H-----HHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHH
Confidence 4677777787 677899999999999998743322 1 2333333322 222 2222 4778888888875
No 401
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=37.89 E-value=82 Score=24.13 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=30.8
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 043116 114 AVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVL 152 (482)
Q Consensus 114 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 152 (482)
+++.|+.-|.++++++...|+.+|...|.+. .+.+.++
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v 46 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLV 46 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHH
Confidence 4788999999999999999999999999666 3334433
No 402
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=37.35 E-value=3.7e+02 Score=25.53 Aligned_cols=130 Identities=10% Similarity=0.066 Sum_probs=82.3
Q ss_pred HHHHHhCcHHHHHHhhCC-CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHH-hcCCC----chhHHHHHHHHH
Q 043116 233 QAVIEAGVCPRLVKLLGH-RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGL-LIHNH----NKSIKKEVCWII 306 (482)
Q Consensus 233 ~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~l-l~~~~----~~~v~~~a~~~L 306 (482)
+.+.+.+++..+..+-.. ..+.++..+++.+.++....... .+....+..++.++ ++... .+.+.++-+..+
T Consensus 3 Eyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~p--lL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL 80 (353)
T PF10257_consen 3 EYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQP--LLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELL 80 (353)
T ss_pred HHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccc--cccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHH
Confidence 456677888888888755 44678999999999988643321 23344566677777 54321 334666666666
Q ss_pred HHHhc---CCHHHHHHHHHcC--------------------------ChHHHHHHHhcCChhHHHHHHHHHHHhhcCC--
Q 043116 307 SNITA---GNREQIQAVIDAG--------------------------LIGPIVNLLQDAEFGTKKEAAWVISNATSGG-- 355 (482)
Q Consensus 307 ~nl~~---~~~~~~~~l~~~~--------------------------~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~-- 355 (482)
..+|. .+|.....+++.+ ++..|+.++.++ -.+-..|..+|.-++.-.
T Consensus 81 ~~lc~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e-g~ig~~Are~LLll~~l~~~ 159 (353)
T PF10257_consen 81 NTLCSKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE-GRIGDFAREGLLLLMSLASE 159 (353)
T ss_pred HHHHHHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcC-cHHHHHHHHHHHHHHhCCCC
Confidence 66665 5677666655422 356667766655 556666777777666544
Q ss_pred CHHHHHHHHH
Q 043116 356 THEQIKHLVR 365 (482)
Q Consensus 356 ~~~~~~~l~~ 365 (482)
++....++.+
T Consensus 160 ~~~~~~~i~~ 169 (353)
T PF10257_consen 160 DPALAQYIVE 169 (353)
T ss_pred CcHHHHHHHH
Confidence 5555666666
No 403
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=36.86 E-value=5.3e+02 Score=27.23 Aligned_cols=175 Identities=15% Similarity=0.138 Sum_probs=102.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHH
Q 043116 39 DDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIF 118 (482)
Q Consensus 39 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 118 (482)
.=+.++..++..+..+++.. +++- ..++..++.-|.+++ ..+-..|.+.|.+|....|..+..+ +..+
T Consensus 316 ~L~~vk~raL~ti~~lL~~k-PEqE-----~~LL~~lVNKlGDpq-nKiaskAsylL~~L~~~HPnMK~Vv-----i~EI 383 (988)
T KOG2038|consen 316 PLEEVKKRALKTIYDLLTNK-PEQE-----NNLLVLLVNKLGDPQ-NKIASKASYLLEGLLAKHPNMKIVV-----IDEI 383 (988)
T ss_pred cHHHHHHHHHHHHHHHHhCC-cHHH-----HHHHHHHHHhcCCcc-hhhhhhHHHHHHHHHhhCCcceeeh-----HHHH
Confidence 34688899999999999875 3332 346777888888888 6888899999999988888776544 3445
Q ss_pred HHhhCCC--CHHHHHHHHHHHHHhhCCCh--hhHHHHHHhCChHHHHHHHcchh----------------------hhh-
Q 043116 119 VKLLASP--SDDVREQAVWALGNVAGDSS--RCRDFVLSQGALIPLLAELNEHA----------------------KLS- 171 (482)
Q Consensus 119 ~~ll~~~--~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~l~~~l~~~~----------------------~~~- 171 (482)
-+++-.+ +......|+.+|..+.-... .....++.. --.++..+.... ..+
T Consensus 384 er~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~i--YF~lFk~l~~~~~~d~~k~~k~~~k~kks~k~~k~e~~ 461 (988)
T KOG2038|consen 384 ERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLISI--YFSLFKTLVGKKDKDNRKDDKGAAKKKKSNKKDKKEEV 461 (988)
T ss_pred HHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHHH--HHHHHHHHHHhhhhhhhhcccchhhcccccccchhhhh
Confidence 5555433 34455677777777663221 122222211 111111110000 000
Q ss_pred ----HHHHHHHHHHHhhcCC----CCC--ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccC
Q 043116 172 ----MLRTATWTLSNFCRGK----PQP--PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADG 227 (482)
Q Consensus 172 ----~~~~a~~~L~~L~~~~----~~~--~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~ 227 (482)
....-...|+.|..+. |.. .......-++.|..+.++.+-.+-..++..|..++..
T Consensus 462 ~~e~~~e~nsrllSAlLTGvNRAfPfaq~~ddk~~~~~~tLFkl~HssNFNTsVQaLmLlfQvs~~ 527 (988)
T KOG2038|consen 462 STESPIELNSRLLSALLTGVNRAFPFAQTADDKLEEQMKTLFKLTHSSNFNTSVQALMLLFQVSKK 527 (988)
T ss_pred cccchhhhhHHHHHHHHhcccccCCcccCchHHHHHHhHHHHHHHhhcccchhHHHHHHHHHHHHh
Confidence 1111223444444332 222 2224456778888888888888888888888777743
No 404
>PLN03205 ATR interacting protein; Provisional
Probab=36.35 E-value=1.7e+02 Score=27.87 Aligned_cols=114 Identities=14% Similarity=0.199 Sum_probs=69.6
Q ss_pred cHHHHHHhhCCCChhhHHHHHHHHhHhhc---CChhhHHHHHhcCchHH---HHHHhcCCCchhHHHHHHHHHHHHhcCC
Q 043116 240 VCPRLVKLLGHRSRLVLTAALRTIGNIVT---GDDFQTQCIINCGALRY---LLGLLIHNHNKSIKKEVCWIISNITAGN 313 (482)
Q Consensus 240 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~~~~~~~l~~~~~i~~---L~~ll~~~~~~~v~~~a~~~L~nl~~~~ 313 (482)
+++.|+.+-.-++..+...+++.|..+.. ++......-++.+++.. +.++-.......||.+|..++.-+...+
T Consensus 324 LlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmss 403 (652)
T PLN03205 324 LVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMST 403 (652)
T ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhcc
Confidence 34556666666677777777777666543 23333344445555443 3333222326678888887776666532
Q ss_pred HH--HHHHHHHcCChHHHHHHHh-cCChhHHHHHHHHHHHhhc
Q 043116 314 RE--QIQAVIDAGLIGPIVNLLQ-DAEFGTKKEAAWVISNATS 353 (482)
Q Consensus 314 ~~--~~~~l~~~~~i~~L~~ll~-~~~~~~~~~a~~aL~~l~~ 353 (482)
.. .+..+....+++.+-++|+ +....++++++..|.-+..
T Consensus 404 na~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN 446 (652)
T PLN03205 404 DAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN 446 (652)
T ss_pred chhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc
Confidence 22 2344555678888888888 4567899999887776543
No 405
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=34.76 E-value=2e+02 Score=21.66 Aligned_cols=79 Identities=15% Similarity=0.208 Sum_probs=48.4
Q ss_pred CcHHHHHHhhCC----CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCC-CchhHHHHHHHHHHHHhc-C
Q 043116 239 GVCPRLVKLLGH----RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHN-HNKSIKKEVCWIISNITA-G 312 (482)
Q Consensus 239 ~~l~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~~v~~~a~~~L~nl~~-~ 312 (482)
|++..+-..+.+ .+...+..++..|+.+......... .+.|.+...|++. +.++++..++.+-..+.. -
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 455555555555 4456788899999988874444333 3455566666543 144788888877777776 2
Q ss_pred CHHHHHHHHH
Q 043116 313 NREQIQAVID 322 (482)
Q Consensus 313 ~~~~~~~l~~ 322 (482)
+++....+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T PF08064_consen 86 DEEDLGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 4444555444
No 406
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=31.37 E-value=1.4e+02 Score=25.67 Aligned_cols=142 Identities=16% Similarity=0.065 Sum_probs=82.7
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHH-HHHHHHhhcCCCCCChhh
Q 043116 116 PIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTA-TWTLSNFCRGKPQPPFNQ 194 (482)
Q Consensus 116 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a-~~~L~~L~~~~~~~~~~~ 194 (482)
..+..+..++..+.+..|+.++......... . .++.+-..+....+-.+.... ..++..+....
T Consensus 54 ~l~~~L~~~~~~E~~~la~~il~~~~~~~~~---~-----~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------- 118 (213)
T PF08713_consen 54 ELADELWESGYREERYLALLILDKRRKKLTE---E-----DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------- 118 (213)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHCGGG--H---H-----HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH-------
T ss_pred HHHHHHcCCchHHHHHHHHHHhHHHhhhhhH---H-----HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh-------
Confidence 3445567777777777777777553311110 0 122333333222333333333 33334333221
Q ss_pred hhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhH
Q 043116 195 IRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQT 274 (482)
Q Consensus 195 ~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 274 (482)
....+.+...+.++++-.+..++-++........ .. .++..+...+.+++.-++....|+|..++..+++..
T Consensus 119 -~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~~--~~-----~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v 190 (213)
T PF08713_consen 119 -PEALELLEKWAKSDNEWVRRAAIVMLLRYIRKED--FD-----ELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEV 190 (213)
T ss_dssp -GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGGCH--HH-----HHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHH
T ss_pred -HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhcC--HH-----HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHH
Confidence 4567778888889998888888777766554311 11 234555566778888999999999999999888776
Q ss_pred HHHHhc
Q 043116 275 QCIINC 280 (482)
Q Consensus 275 ~~l~~~ 280 (482)
...++.
T Consensus 191 ~~~l~~ 196 (213)
T PF08713_consen 191 LEFLQK 196 (213)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655544
No 407
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=31.16 E-value=2.3e+02 Score=23.50 Aligned_cols=93 Identities=14% Similarity=0.114 Sum_probs=59.4
Q ss_pred hhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHH
Q 043116 253 RLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNL 332 (482)
Q Consensus 253 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l 332 (482)
-++|..|..++..+......... + ..+++.+..-+.+ +.+++.-+...+..++...|.....-++ .+++.+-..
T Consensus 41 LelRK~ayE~lytlLd~~~~~~~-~--~~~~~~v~~GL~D--~~DIk~L~~~~l~kl~~~~p~~v~~~Ld-~l~~~l~~~ 114 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRID-I--SEFLDRVEAGLKD--EHDIKMLCHLMLSKLAQLAPEEVLQRLD-SLVEPLRKT 114 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS--H--HHHHHHHHHTTSS---HHHHHHHHHHHHHHHHS-HHHHHHCCT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-H--HHHHHHHHhhcCC--cHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHH
Confidence 46899999999988764433222 1 1245667777755 6789999999999999877775443333 567777777
Q ss_pred HhcC------------ChhHHHHHHHHHHHh
Q 043116 333 LQDA------------EFGTKKEAAWVISNA 351 (482)
Q Consensus 333 l~~~------------~~~~~~~a~~aL~~l 351 (482)
+... ..+..+.++.++..+
T Consensus 115 L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l 145 (169)
T PF08623_consen 115 LSKKLKENAVKQEIEKQQELIRSVLRAVKAL 145 (169)
T ss_dssp HH----TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 7421 234566666666666
No 408
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=30.77 E-value=7.7e+02 Score=27.29 Aligned_cols=140 Identities=9% Similarity=-0.002 Sum_probs=85.6
Q ss_pred hcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCCh
Q 043116 290 LIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCV 369 (482)
Q Consensus 290 l~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l 369 (482)
.++- ++.+|..+...|+-.+..-|+ .+++...+..+-=.|.+.+.+||..++.+|-.+.........-.+.-+.+=
T Consensus 296 YRDV-~~~IRaiCiqeLgiWi~~yP~---~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK 371 (1048)
T KOG2011|consen 296 YRDV-DPDIRAICIQELGIWIKSYPE---IFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFK 371 (1048)
T ss_pred cccC-chHHHHHHHHHHHHHHHhccH---HHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 3455 889999999999988875555 444544444444456788999999999999999886322222222333445
Q ss_pred HHHHhcC-CCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 043116 370 KPLCDLL-PCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETY 448 (482)
Q Consensus 370 ~~L~~ll-~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~ 448 (482)
..++++. .+.+..|+...+..+..... ...+ .-.-+..+..++.+.+++++..|...+..-
T Consensus 372 ~RIVeMadrd~~~~Vrav~L~~~~~~~~-----------------~g~L-~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k 433 (1048)
T KOG2011|consen 372 DRIVEMADRDRNVSVRAVGLVLCLLLSS-----------------SGLL-SDKDILIVYSLIYDSNRRVAVAAGEFLYKK 433 (1048)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHhc-----------------cccc-ChhHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 5667766 33444555444433222221 1111 112246678888999999988877776654
Q ss_pred cCC
Q 043116 449 WCG 451 (482)
Q Consensus 449 ~~~ 451 (482)
+..
T Consensus 434 ~~~ 436 (1048)
T KOG2011|consen 434 LFE 436 (1048)
T ss_pred hhc
Confidence 433
No 409
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.40 E-value=66 Score=29.95 Aligned_cols=62 Identities=10% Similarity=0.055 Sum_probs=49.5
Q ss_pred HHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhh--CCCChhhHHHHHHHHhHhhcCChhhHHHH
Q 043116 216 DACRALAYLADGTNDKIQAVIEAGVCPRLVKLL--GHRSRLVLTAALRTIGNIVTGDDFQTQCI 277 (482)
Q Consensus 216 ~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll--~~~~~~v~~~a~~~L~~l~~~~~~~~~~l 277 (482)
+.++.+++++...++..+.+.+.|+++.+++-- .+.+|-+++.++.|+.++..++.+..+.+
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i 438 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKII 438 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHH
Confidence 377788999987777778888888888877653 55678899999999999998877766543
No 410
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=30.06 E-value=3.8e+02 Score=23.52 Aligned_cols=130 Identities=12% Similarity=0.146 Sum_probs=78.8
Q ss_pred hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC---------C----h-----hhHHHHHHHHhHhhcCChh
Q 043116 211 EKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR---------S----R-----LVLTAALRTIGNIVTGDDF 272 (482)
Q Consensus 211 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~---------~----~-----~v~~~a~~~L~~l~~~~~~ 272 (482)
.......+..+..+... ++....+.+.++++.+...|..- + + .....=+..||.++. ++.
T Consensus 78 ~~y~~vGc~L~~~Ll~~-~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~-~~~ 155 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSS-PEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSS-TPN 155 (226)
T ss_pred hHHHHHHHHHHHHHHcC-cHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhC-Chh
Confidence 44555566666666654 44555666777777777776432 1 1 122223567788876 555
Q ss_pred hHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhh
Q 043116 273 QTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNAT 352 (482)
Q Consensus 273 ~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~ 352 (482)
..+.+-+.+++..+..+.....+.++.+. ++.++-.+.+...+.+ |-..|..++..+|..|..-|..+.
T Consensus 156 Gl~lLe~~~if~~l~~i~~~~~~~~l~kl---il~~LDY~~~~~~R~i--------LsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 156 GLKLLERWNIFTMLYHIFSLSSRDDLLKL---ILSSLDYSVDGHPRII--------LSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHHCCHHHHHHHHHccCchHHHHHH---HHhhCCCCCccHHHHH--------HHHHHhcCCHHHHHHHHHHHHHHh
Confidence 55767788999999999988634333322 4444433333323332 234567888899999988887765
Q ss_pred c
Q 043116 353 S 353 (482)
Q Consensus 353 ~ 353 (482)
.
T Consensus 225 r 225 (226)
T PF14666_consen 225 R 225 (226)
T ss_pred c
Confidence 3
No 411
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=29.63 E-value=2.3e+02 Score=21.44 Aligned_cols=90 Identities=9% Similarity=0.080 Sum_probs=54.1
Q ss_pred CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHH
Q 043116 251 RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIV 330 (482)
Q Consensus 251 ~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~ 330 (482)
..+.+..-+.+++.+.. ... .++..+.+.+... .+.-|-.+.+.+-.++..........+...+.+.+.
T Consensus 17 S~~~I~~lt~~a~~~~~-----~a~-----~iv~~i~~~i~~~-~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~ 85 (114)
T cd03562 17 SQPSIQTLTKLAIENRK-----HAK-----EIVEIIEKHIKKC-PPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFL 85 (114)
T ss_pred cHHHHHHHHHHHHHHHH-----HHH-----HHHHHHHHHHHhC-CcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 33455555666665542 222 3455566677666 667778888888888874333333344444466777
Q ss_pred HHHhcCChhHHHHHHHHHHHh
Q 043116 331 NLLQDAEFGTKKEAAWVISNA 351 (482)
Q Consensus 331 ~ll~~~~~~~~~~a~~aL~~l 351 (482)
..+...++.++......+.-.
T Consensus 86 ~~~~~~~~~~r~kl~rl~~iW 106 (114)
T cd03562 86 DAYEKVDEKTRKKLERLLNIW 106 (114)
T ss_pred HHHHhCCHHHHHHHHHHHHHc
Confidence 777777777777666555443
No 412
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.33 E-value=5.7e+02 Score=29.53 Aligned_cols=118 Identities=7% Similarity=0.093 Sum_probs=75.7
Q ss_pred HhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhhc
Q 043116 278 INCGALRYLLGLLIHNHNKSIKKEVCWIISNITA--GNREQIQAVIDAGLIGPIVNLLQDA--EFGTKKEAAWVISNATS 353 (482)
Q Consensus 278 ~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~~~--~~~~~~~a~~aL~~l~~ 353 (482)
++-.++|.+-+++-+. .++-+.+--|.+.-+.. .++...+.+...+.+..++..+.++ +...+.-...+|++-+.
T Consensus 1537 vdlq~iP~F~~ffySs-~~e~~t~R~Wvl~LV~~glks~~D~ql~~~~~~~~~~lsf~sS~l~~~~S~~LIL~~L~~~Vk 1615 (1758)
T KOG1791|consen 1537 VDLQGIPIFHRFFYSS-VFEHHTEREWVLELVSKGLKSCPDYQLLQIRNIFETLLSFYSSPLASEESKRLILATLQKGVK 1615 (1758)
T ss_pred cccCCCccHHHHHHhc-cccccchhhhhHHHHHHHhcCchhhhHHhhcCcceEeehhhcchhHHHHHHHHHHHHHHhcCC
Confidence 3456677777777666 55555555666655544 3445567777788888888888763 56667777888888777
Q ss_pred CCCHHHHHHHHHcCChHHHHhcCCCCCH--HHHHH-HHHHHHHHHHh
Q 043116 354 GGTHEQIKHLVREGCVKPLCDLLPCPDP--QIVTV-CLIGLENILKV 397 (482)
Q Consensus 354 ~~~~~~~~~l~~~~~l~~L~~ll~~~~~--~v~~~-~l~~L~~l~~~ 397 (482)
. .......+...|....+..++.++.- -.... ....+..+...
T Consensus 1616 ~-p~~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~l~~~v~~~l~~a 1661 (1758)
T KOG1791|consen 1616 F-PFYAYEMLEVPGLFSWILNIIPSSFLKPVLLKALVISVLKVLWVA 1661 (1758)
T ss_pred C-cHHHHHHHhcccHHHHHHHhccccccchHHHhhhHHHHHHHHHHh
Confidence 4 23334444567999999999987543 23333 44455555443
No 413
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=29.33 E-value=2.5e+02 Score=21.18 Aligned_cols=86 Identities=8% Similarity=0.062 Sum_probs=50.6
Q ss_pred hhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh
Q 043116 168 AKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKL 247 (482)
Q Consensus 168 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 247 (482)
+.+.+..-..|++.+... ...++..+...+....+.-+-.++..+-.++.+............+.+.+...
T Consensus 17 S~~~I~~lt~~a~~~~~~---------a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~ 87 (114)
T cd03562 17 SQPSIQTLTKLAIENRKH---------AKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDA 87 (114)
T ss_pred cHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 444555566677766522 25667777777777777777778887777776544333334443444555555
Q ss_pred hCCCChhhHHHHHHH
Q 043116 248 LGHRSRLVLTAALRT 262 (482)
Q Consensus 248 l~~~~~~v~~~a~~~ 262 (482)
....++.++.....+
T Consensus 88 ~~~~~~~~r~kl~rl 102 (114)
T cd03562 88 YEKVDEKTRKKLERL 102 (114)
T ss_pred HHhCCHHHHHHHHHH
Confidence 555566665544433
No 414
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=29.29 E-value=1.9e+02 Score=19.77 Aligned_cols=65 Identities=12% Similarity=0.113 Sum_probs=42.5
Q ss_pred HHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHH
Q 043116 177 TWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCP 242 (482)
Q Consensus 177 ~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~ 242 (482)
+++.+.|--. |.........+...+..-+..-++.....+++.++-+-..+.+..+.+.+..++.
T Consensus 5 l~~fa~LNy~-P~~~~~f~~~~~~~L~~~l~~~~p~~ll~~v~Sl~~l~~~p~~~l~~vf~~~Fl~ 69 (71)
T PF06743_consen 5 LLPFARLNYQ-PPNAEEFFEKLIERLESYLDEFSPEDLLDLVWSLCLLQRFPEDLLNKVFSPDFLQ 69 (71)
T ss_pred HHHHHhcCCC-CCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhCCHHHHHHHcCHHHHh
Confidence 3444444432 3333334456666666777777899999999999988888777766666654443
No 415
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=29.05 E-value=3.3e+02 Score=23.46 Aligned_cols=74 Identities=12% Similarity=0.125 Sum_probs=48.9
Q ss_pred HHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 043116 241 CPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAV 320 (482)
Q Consensus 241 l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 320 (482)
.+.+.....+++.=.+..|+-+........+. . -....+...+.++ +..+++...|+|..++..+++.+..+
T Consensus 117 ~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~~~--~-----~l~~~~~~~~~d~-e~fI~KAiGW~LRe~~k~d~~~V~~f 188 (208)
T cd07064 117 EPVMDEWSTDENFWLRRTAILHQLKYKEKTDT--D-----LLFEIILANLGSK-EFFIRKAIGWALREYSKTNPDWVRDF 188 (208)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHccCH--H-----HHHHHHHHhCCCh-HHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 35677777888877777776544333332111 1 1223344555566 88899999999999999888877776
Q ss_pred HH
Q 043116 321 ID 322 (482)
Q Consensus 321 ~~ 322 (482)
++
T Consensus 189 l~ 190 (208)
T cd07064 189 VA 190 (208)
T ss_pred HH
Confidence 65
No 416
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.67 E-value=9.4e+02 Score=27.61 Aligned_cols=111 Identities=15% Similarity=0.171 Sum_probs=65.4
Q ss_pred HHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 043116 241 CPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAV 320 (482)
Q Consensus 241 l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 320 (482)
+..+++-+...++..+..|+..++++....+......+-.-....+.+++.+. +..||...-.++.++...-...+...
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~-~~~VR~~t~~v~s~l~t~lkk~lsp~ 121 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDE-DRTVRLLTHDVFSKLLTKLKKKLSPF 121 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 46677777788999999999999999864432211110001222334555566 89999999999999886433333333
Q ss_pred HHcCChHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 043116 321 IDAGLIGPIVNLLQDAEFGTKKEAAWVISNATS 353 (482)
Q Consensus 321 ~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~ 353 (482)
++ .+++...-.-.+.+..+-..|...+.....
T Consensus 122 LK-~li~~wl~~~~d~~~~vs~aa~~sf~~~f~ 153 (1312)
T KOG0803|consen 122 LK-SLIPPWLGGQFDLDYPVSEAAKASFKDGFA 153 (1312)
T ss_pred HH-hhhhhhhheecccchHHHHHHHHHHHhhcC
Confidence 33 233333322234455566666666655544
No 417
>PRK09169 hypothetical protein; Validated
Probab=28.60 E-value=1.2e+03 Score=28.64 Aligned_cols=111 Identities=15% Similarity=0.057 Sum_probs=51.5
Q ss_pred HHHHHHhh-cCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 043116 72 VPRFVEFL-MREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDF 150 (482)
Q Consensus 72 ~~~L~~ll-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 150 (482)
+..+++-+ +=++++..+.. +..|.......+..+..+-..++-..+-.+-+-++....+.+...|..-....+..+..
T Consensus 165 v~~lLNalSKWP~~~~c~~a-a~~lA~~la~~~~l~~al~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~~ 243 (2316)
T PRK09169 165 FALLLNALSKWPDNTDCQTA-AEQLADRLASDSRLLQAMDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLLQS 243 (2316)
T ss_pred HHHHHHHhccCCCchHHHHH-HHHHHHHhccCHHHHHhcchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHHh
Confidence 34444444 33443444444 44444444446666655544444444444444555555556666666555444443322
Q ss_pred HHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhh
Q 043116 151 VLSQGALIPLLAELNEHAKLSMLRTATWTLSNFC 184 (482)
Q Consensus 151 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~ 184 (482)
+ ...-+..+++-+.+=++.+.-..++..|....
T Consensus 244 l-~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rl 276 (2316)
T PRK09169 244 L-RAQEVALLLNALSKWPDDEACRQAAEALAARL 276 (2316)
T ss_pred c-CHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 2 11224445555544444444444444444433
No 418
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=28.06 E-value=4.9e+02 Score=24.09 Aligned_cols=123 Identities=14% Similarity=0.239 Sum_probs=81.3
Q ss_pred HHHhcCCHHHHHHhhcC-------CC-------------C--hHHHHHHHHHHHHHhCCChHhHHH--------------
Q 043116 65 KVIQSGVVPRFVEFLMR-------ED-------------Y--PQLQFEAARALTNIASGTSENTKV-------------- 108 (482)
Q Consensus 65 ~~~~~g~~~~L~~ll~~-------~~-------------~--~~v~~~a~~~L~~l~~~~~~~~~~-------------- 108 (482)
.+.+.|++|.|-++++. ++ + ..++.+-++.+.+++.++......
T Consensus 4 ~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~~ 83 (303)
T PF12463_consen 4 RLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESELN 83 (303)
T ss_pred HHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccccc
Confidence 35567788887776651 00 0 137888899999998844222111
Q ss_pred -------HHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChh--hHHHHHHhCChHHHHHHHcchh--hhhHHHH
Q 043116 109 -------AIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSSR--CRDFVLSQGALIPLLAELNEHA--KLSMLRT 175 (482)
Q Consensus 109 -------~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~~i~~l~~~l~~~~--~~~~~~~ 175 (482)
--+.|.+..+++.+.. .+...|-.-+.++-.+.++.+. -+..+.+.|.++.++..+.++. +..+.+.
T Consensus 84 ~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~ 163 (303)
T PF12463_consen 84 SNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQS 163 (303)
T ss_pred ccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHH
Confidence 1134667777776653 3556677778888888866544 4557888899999999886443 3457777
Q ss_pred HHHHHHHhhcCC
Q 043116 176 ATWTLSNFCRGK 187 (482)
Q Consensus 176 a~~~L~~L~~~~ 187 (482)
....|..|.+..
T Consensus 164 ~FDLLGELiK~n 175 (303)
T PF12463_consen 164 NFDLLGELIKFN 175 (303)
T ss_pred HHHHHHHHHCCC
Confidence 888888888765
No 419
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=27.95 E-value=6.4e+02 Score=25.43 Aligned_cols=132 Identities=15% Similarity=0.125 Sum_probs=78.5
Q ss_pred hhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhcc--------CChhHHHHHHHHHHHhccCCcHHHHHHHHhC
Q 043116 168 AKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRS--------NDEKVLTDACRALAYLADGTNDKIQAVIEAG 239 (482)
Q Consensus 168 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~--------~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~ 239 (482)
.++..+..|+..|.. + .-...++|.++.++.. .|-....+.++.++.|..+..-..+..+ ..
T Consensus 219 ~~~~~r~eAL~sL~T---D------sGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYl-h~ 288 (576)
T KOG2549|consen 219 SDEPLRQEALQSLET---D------SGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYL-HQ 288 (576)
T ss_pred CCHHHHHHHHHhhcc---C------ccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHH-HH
Confidence 445555555554432 1 1124566777776652 4567778888888888876553333222 24
Q ss_pred cHHHHHHhhCC----------CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCC-chhHHHHHHHHHHH
Q 043116 240 VCPRLVKLLGH----------RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNH-NKSIKKEVCWIISN 308 (482)
Q Consensus 240 ~l~~L~~ll~~----------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~~v~~~a~~~L~n 308 (482)
+++.++.++-. ..+.+|..|+..+..++......... +...++..+.+.+.+.. ......-+...|..
T Consensus 289 L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~ 367 (576)
T KOG2549|consen 289 LVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHYGAIAGLSE 367 (576)
T ss_pred HhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHH
Confidence 66777766532 34568999999999998765544333 44456777777776652 34445555555555
Q ss_pred Hh
Q 043116 309 IT 310 (482)
Q Consensus 309 l~ 310 (482)
+.
T Consensus 368 lg 369 (576)
T KOG2549|consen 368 LG 369 (576)
T ss_pred hh
Confidence 53
No 420
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=27.56 E-value=78 Score=29.10 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=43.8
Q ss_pred HcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCC-------------CHHHHHHHHHcCChHHHHhcCC
Q 043116 322 DAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGG-------------THEQIKHLVREGCVKPLCDLLP 377 (482)
Q Consensus 322 ~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~-------------~~~~~~~l~~~~~l~~L~~ll~ 377 (482)
+..++..+++-+...+...+..|+.+|..++.+. -..+...+.+.|+++.|.+++.
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3457778888888888899999999999998754 2344566778899999998874
No 421
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=27.42 E-value=1.6e+02 Score=18.21 Aligned_cols=35 Identities=11% Similarity=0.214 Sum_probs=21.2
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHH
Q 043116 73 PRFVEFLMREDYPQLQFEAARALTNIASGTSENTKV 108 (482)
Q Consensus 73 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 108 (482)
..++++|..++ +..+.+.+.+|+.+..-+++-.+.
T Consensus 10 Nvl~~fl~~~~-~~~~~~llpvi~tlL~fs~~e~~~ 44 (46)
T PF01465_consen 10 NVLLQFLESRE-PSEREQLLPVIATLLKFSPEEKQK 44 (46)
T ss_dssp HHHHHHHTTSS----HHHHHHHHHHHTT--HHHHHH
T ss_pred HHHHHHhcCCc-hhhHHHHHHHHHHHHCCCHHHHHh
Confidence 34677777777 677888888888887766655443
No 422
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=27.18 E-value=7.8e+02 Score=26.15 Aligned_cols=58 Identities=12% Similarity=0.058 Sum_probs=37.4
Q ss_pred hhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 043116 253 RLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA 311 (482)
Q Consensus 253 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 311 (482)
......+++||..+....-.....+-....+-.+...+.-. .+.+...++.+++.+|.
T Consensus 206 ~k~~~eiIrClka~mNn~~Gl~~vL~~e~~lllla~aldpr-~pnmm~dvvkllsalci 263 (1102)
T KOG1924|consen 206 IKNLQEIIRCLKAFMNNKFGLVLVLRRERSLLLLARALDPR-EPNMMTDVVKLLSALCI 263 (1102)
T ss_pred HHHHHHHHHHHHHHhccccceeeeecCCccHHHHHHhcCcc-CccHHHHHHHHHHHHhe
Confidence 34667778888877764433333233333455666777666 77788888888888875
No 423
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=26.88 E-value=8.8e+02 Score=26.67 Aligned_cols=66 Identities=11% Similarity=-0.028 Sum_probs=38.0
Q ss_pred CChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhc
Q 043116 336 AEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAE 401 (482)
Q Consensus 336 ~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~ 401 (482)
....++.....++..+........-..+...-++-.+...--+.+.+++..+...|.|+...+...
T Consensus 442 s~~~Vrik~~~~l~~~~l~nr~~yeeEIL~~VvL~~lshi~L~~~~qvr~l~~~~l~N~a~~C~t~ 507 (1697)
T KOG3687|consen 442 SRGAVRIKVLDVLSFVLLINRQFYEEEILNSVVLSQLSHIPLDKDHQVRKLATQLLVNLAEGCHTH 507 (1697)
T ss_pred ccceEEEeeHHHHHHHHhhhhhhhHHHhhhheeeEeeccccccchhHHHHHHHHHHHHHHhhcchh
Confidence 345566666777776654322222222223333333333333456689999999999999887763
No 424
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=26.48 E-value=6e+02 Score=24.59 Aligned_cols=48 Identities=23% Similarity=0.129 Sum_probs=37.6
Q ss_pred ChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 043116 102 TSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRD 149 (482)
Q Consensus 102 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 149 (482)
+++..+..++...+-.|+.+..++|++-|+..-.+|.++.+.-..+|.
T Consensus 166 d~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~ 213 (457)
T KOG2085|consen 166 DPSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRP 213 (457)
T ss_pred CHHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHH
Confidence 345567778888999999999999999999888888888754444443
No 425
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=25.87 E-value=2.9e+02 Score=20.83 Aligned_cols=79 Identities=16% Similarity=0.182 Sum_probs=46.6
Q ss_pred CcHHHHHHhhCCCC--h--hhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCC-chhHHHHHHHHHHHHhc-C
Q 043116 239 GVCPRLVKLLGHRS--R--LVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNH-NKSIKKEVCWIISNITA-G 312 (482)
Q Consensus 239 ~~l~~L~~ll~~~~--~--~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~~v~~~a~~~L~nl~~-~ 312 (482)
|++..+-..+.+.+ . .-+..++..++.+..-...... .+.|.+...|++.- .++++..++.+-..+.. -
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~-----~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS-----SALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 55566666665543 2 3588888888888763333222 24455555554421 45688888888777776 2
Q ss_pred CHHHHHHHHH
Q 043116 313 NREQIQAVID 322 (482)
Q Consensus 313 ~~~~~~~l~~ 322 (482)
+++....+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T smart00802 86 KEEELGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 3444555544
No 426
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=25.85 E-value=1.1e+02 Score=28.02 Aligned_cols=57 Identities=28% Similarity=0.378 Sum_probs=42.5
Q ss_pred HHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCCh--------------HhHHHHHhCCChHHHHHhhC
Q 043116 66 VIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTS--------------ENTKVAIDHGAVPIFVKLLA 123 (482)
Q Consensus 66 ~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~--------------~~~~~~~~~g~i~~L~~ll~ 123 (482)
..+...+..+++-|.+.+ ...|..|+++|.-++.+.- .+...+.+.|+++.+..+|.
T Consensus 56 ~~~~~~i~~ll~~L~~~~-~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 56 DQRKDFIEKLLDQLESSD-SEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred hhHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 345567778888888888 8899999999999987542 23345667778888777775
No 427
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=25.51 E-value=2e+02 Score=18.87 Aligned_cols=44 Identities=7% Similarity=0.115 Sum_probs=35.8
Q ss_pred HHHHHHHhchHHHHHHhh-cCCCHHHHHHHHHHHHHhcCCCCCCC
Q 043116 413 YAQLVEEAEGLEKIENLQ-SHDNNDIHEMSVKILETYWCGRVVGP 456 (482)
Q Consensus 413 ~~~~l~~~~~~~~l~~l~-~~~~~~v~~~a~~~l~~~~~~~~~~~ 456 (482)
-++.+.+.|+...+..+- ..++++|.+...++++-+..+|...+
T Consensus 11 GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE~e~~ 55 (58)
T PF04064_consen 11 GREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDEPEEG 55 (58)
T ss_pred HHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccC
Confidence 478888999999999884 44689999999999998887776543
No 428
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=25.42 E-value=1.1e+03 Score=27.46 Aligned_cols=135 Identities=18% Similarity=0.171 Sum_probs=73.6
Q ss_pred HHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcC
Q 043116 202 LAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCG 281 (482)
Q Consensus 202 L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~ 281 (482)
.-.++++.++.++.-+......+-...+. ..+..++..|+..+-+++..-...|+.+|..++..++...... +.
T Consensus 440 a~~Ll~S~e~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~f--a~ 513 (1426)
T PF14631_consen 440 AQSLLRSKEPSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPF--AT 513 (1426)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHT--HH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHH--HH
Confidence 33456788888888877777776655432 2344577888888866776666789999999997655443322 22
Q ss_pred chHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHH
Q 043116 282 ALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEA 344 (482)
Q Consensus 282 ~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a 344 (482)
.+..+++.+.+=....+| ....+++.++...... ..-+...+.-.+-+.+.+.++..++..
T Consensus 514 ~l~giLD~l~~Ls~~qiR-~lf~il~~La~~~~~~-~s~i~del~ivIRKQLss~~~~~K~~G 574 (1426)
T PF14631_consen 514 FLKGILDYLDNLSLQQIR-KLFDILCTLAFSDSSS-SSSIQDELHIVIRKQLSSSNPKYKRIG 574 (1426)
T ss_dssp HHHGGGGGGGG--HHHHH-HHHHHHHHHHHHHSS----HHHHHHHHHHHHHHT-SSHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHH-HHHHHHHHHhcCCccc-chhhHHHHHHHHHHhhcCCcHHHHHHh
Confidence 344444444443133343 4567777776521111 111222233334445566677666553
No 429
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=25.03 E-value=4.7e+02 Score=22.94 Aligned_cols=128 Identities=13% Similarity=0.181 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCh--------------h----HHHHHHHHHHHhhcCCCH
Q 043116 296 KSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEF--------------G----TKKEAAWVISNATSGGTH 357 (482)
Q Consensus 296 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~--------------~----~~~~a~~aL~~l~~~~~~ 357 (482)
......+|..+..+... ++....+.+.++++.+.+.+..-++ . +...-...|+.++. ++
T Consensus 78 ~~y~~vGc~L~~~Ll~~-~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~--~~ 154 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSS-PEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSS--TP 154 (226)
T ss_pred hHHHHHHHHHHHHHHcC-cHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhC--Ch
Confidence 33445566666666654 6667777788888888887763211 1 22223446667765 67
Q ss_pred HHHHHHHHcCChHHHHhcCCCCCH-HHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHH
Q 043116 358 EQIKHLVREGCVKPLCDLLPCPDP-QIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNND 436 (482)
Q Consensus 358 ~~~~~l~~~~~l~~L~~ll~~~~~-~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~ 436 (482)
...+.+.+.+++..+..+.+.++. ++... ++.++ .+.. +...+. .|...+.+.++.
T Consensus 155 ~Gl~lLe~~~if~~l~~i~~~~~~~~l~kl---il~~L-DY~~-----------~~~~R~--------iLsKaLt~~s~~ 211 (226)
T PF14666_consen 155 NGLKLLERWNIFTMLYHIFSLSSRDDLLKL---ILSSL-DYSV-----------DGHPRI--------ILSKALTSGSES 211 (226)
T ss_pred hHHHHHHHCCHHHHHHHHHccCchHHHHHH---HHhhC-CCCC-----------ccHHHH--------HHHHHHhcCCHH
Confidence 778888888999999999887644 23322 22222 2111 111333 366778899999
Q ss_pred HHHHHHHHHHHhc
Q 043116 437 IHEMSVKILETYW 449 (482)
Q Consensus 437 v~~~a~~~l~~~~ 449 (482)
++..|.+.+..+.
T Consensus 212 iRl~aT~~L~~ll 224 (226)
T PF14666_consen 212 IRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887664
No 430
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=24.88 E-value=4.1e+02 Score=23.52 Aligned_cols=73 Identities=19% Similarity=0.101 Sum_probs=45.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043116 375 LLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCG 451 (482)
Q Consensus 375 ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 451 (482)
+++++++.+.+.++.+..+++...-..-.. ....+.....+ .+.-+.+.++..+.++.++-.+.+.++....-
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~--~~~~~~~W~~~--~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~ 73 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICV--NPSDEQLWESM--NELKDRILSLWDSENPGVKLAAIKFLERVILV 73 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS----HHHHHHHHHH--HHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcC--CchHHHHHHHH--HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 467889999999998888887642221100 01112222322 23356677778888999999999999985443
No 431
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=24.69 E-value=1.6e+02 Score=28.99 Aligned_cols=69 Identities=16% Similarity=0.203 Sum_probs=50.1
Q ss_pred HHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 043116 242 PRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA 311 (482)
Q Consensus 242 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 311 (482)
..+-.+..+.+++++..+..++++++.+.......+-...+-..++..+..+ .+++-+.++.++.-+..
T Consensus 331 ~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~-~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 331 KALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTP-EPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhccc-ccccchhhhHHHHHhhh
Confidence 3344444668899999999999999987665544333445566778888877 78888888888877653
No 432
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=23.21 E-value=4.4e+02 Score=21.91 Aligned_cols=94 Identities=14% Similarity=0.158 Sum_probs=59.3
Q ss_pred hhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhh
Q 043116 169 KLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLL 248 (482)
Q Consensus 169 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll 248 (482)
.-+++..|..++..+........ ....++..+..-+.+ +.+++..+...+.+++...+.....-++ .+++.+-..|
T Consensus 40 GLelRK~ayE~lytlLd~~~~~~--~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld-~l~~~l~~~L 115 (169)
T PF08623_consen 40 GLELRKAAYECLYTLLDTCLSRI--DISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLD-SLVEPLRKTL 115 (169)
T ss_dssp GGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCT-TTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHh
Confidence 45788889899988877542222 245667777888877 8999999999999999776654322211 5566666666
Q ss_pred CCC------------ChhhHHHHHHHHhHh
Q 043116 249 GHR------------SRLVLTAALRTIGNI 266 (482)
Q Consensus 249 ~~~------------~~~v~~~a~~~L~~l 266 (482)
+.. ..+..+.+++++..+
T Consensus 116 ~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l 145 (169)
T PF08623_consen 116 SKKLKENAVKQEIEKQQELIRSVLRAVKAL 145 (169)
T ss_dssp H----TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 321 123455566666655
No 433
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=23.16 E-value=3.5e+02 Score=20.70 Aligned_cols=70 Identities=16% Similarity=0.117 Sum_probs=45.8
Q ss_pred hhhHHHHHHHHhc-cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhh-CCCChhh-HHHHHHHHhHhhcCC
Q 043116 195 IRPALRVLAQLIR-SNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLL-GHRSRLV-LTAALRTIGNIVTGD 270 (482)
Q Consensus 195 ~~~~~~~L~~ll~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v-~~~a~~~L~~l~~~~ 270 (482)
...++|.+...+. +..++.+..+...++.++..-+=. ..++..++..+ .+..... ...++.++..++...
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~------~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS------DEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc------HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 4567888999998 778999999999999998553311 12233443333 3333332 477888888888543
No 434
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.55 E-value=9e+02 Score=25.28 Aligned_cols=142 Identities=17% Similarity=0.141 Sum_probs=73.6
Q ss_pred hHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChh
Q 043116 115 VPIFVKLL-ASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFN 193 (482)
Q Consensus 115 i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 193 (482)
++.+++-| .+.|+..|..|-.+|..++ .+|++-.. ..-++.+.+.+--+--|..+|..+..........
T Consensus 7 Le~lCk~LY~s~D~~~R~~AE~~L~e~s-~speclsk---------Cqlll~~gs~pYs~mlAst~L~Klvs~~t~lpl~ 76 (1082)
T KOG1410|consen 7 LESLCKDLYESTDPTARHRAEKALAELS-ESPECLSK---------CQLLLERGSYPYSQMLASTCLMKLVSRKTPLPLE 76 (1082)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHc-cCHHHHHH---------HHHHHHcCCCchHHHHHHHHHHHHHcCCCCCcHH
Confidence 45566644 4678888999999999988 44544222 2222323333333344556666666655433333
Q ss_pred hhhhHHHHHHHHhccCChh----HHHHHHHHHHHhccC---CcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHh
Q 043116 194 QIRPALRVLAQLIRSNDEK----VLTDACRALAYLADG---TNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266 (482)
Q Consensus 194 ~~~~~~~~L~~ll~~~~~~----~~~~~l~~L~~l~~~---~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 266 (482)
..-.+-..++..+.+..|. +....+..++.+... +..+.+..+ .+.+..+.+.+..++.+.-.-++.+|..+
T Consensus 77 qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~F-Rd~v~~~~kfl~~~~ve~~~igv~iLsqL 155 (1082)
T KOG1410|consen 77 QRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVF-RDPVDDVTKFLQMDNVEHCIIGVQILSQL 155 (1082)
T ss_pred HHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchh-hhhHHHHHHHhccCchHHHHHHHHHHHHH
Confidence 4445555666666654433 334444444444421 111111111 24556666677666655555555555555
Q ss_pred h
Q 043116 267 V 267 (482)
Q Consensus 267 ~ 267 (482)
.
T Consensus 156 v 156 (1082)
T KOG1410|consen 156 V 156 (1082)
T ss_pred H
Confidence 4
No 435
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=21.65 E-value=1.7e+02 Score=17.89 Aligned_cols=27 Identities=11% Similarity=0.170 Sum_probs=21.9
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHH
Q 043116 421 EGLEKIENLQSHDNNDIHEMSVKILET 447 (482)
Q Consensus 421 ~~~~~l~~l~~~~~~~v~~~a~~~l~~ 447 (482)
+.-+.|++++...++..+..|..++..
T Consensus 17 ~Ar~lL~evl~~~~~~q~~eA~~LL~~ 43 (44)
T TIGR03504 17 GARELLEEVIEEGDEAQRQEARALLAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 456678888888899999999988875
No 436
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=21.21 E-value=9.3e+02 Score=24.93 Aligned_cols=34 Identities=9% Similarity=0.045 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcC
Q 043116 253 RLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIH 292 (482)
Q Consensus 253 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~ 292 (482)
-..|..+++.|.+|+..+...+- +.+.+++++.+
T Consensus 442 ~PLRlhcir~Li~Ls~ssg~fIP------i~~ll~Eml~~ 475 (661)
T KOG2256|consen 442 YPLRLHCIRSLISLSRSSGTFIP------LSPLLVEMLKS 475 (661)
T ss_pred hhHHHHHHHHHHHHHhhcCceee------cHHHHHHHHHH
Confidence 46899999999999986554432 44556666654
No 437
>KOG2219 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.75 E-value=1.7e+02 Score=29.69 Aligned_cols=162 Identities=12% Similarity=0.157 Sum_probs=84.6
Q ss_pred cCChhHHHHHHHHHHHhc----cCCcHHHHHHHHhCcHHHHHHhhCCCCh-hhHHHHHHHHhHhhcC--ChhhHHHHHhc
Q 043116 208 SNDEKVLTDACRALAYLA----DGTNDKIQAVIEAGVCPRLVKLLGHRSR-LVLTAALRTIGNIVTG--DDFQTQCIINC 280 (482)
Q Consensus 208 ~~~~~~~~~~l~~L~~l~----~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~v~~~a~~~L~~l~~~--~~~~~~~l~~~ 280 (482)
..+..+...+++++..+. ++++...+.+.+...+..++.+|...+. .+...-+.+|.-+..+ ++...-.++..
T Consensus 38 E~Nr~llVEaLRsIaEILiwGDQnDssvFdFFlEkqml~yFl~Ilrq~st~~v~VQLLQTlnIlfeNirhEtslYyLlSN 117 (864)
T KOG2219|consen 38 ENNRKLLVEALRAIAEILIWGDQNDSSVFDFFLEKQMLGYFLRILRQKSTVTVCVQLLQTLNILFENIRHETSLYYLLSN 117 (864)
T ss_pred ccchhHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhcCCceEeHHHHHHHHHHHHhccccceeeeeecc
Confidence 346778888888888877 3455566778888888899999977654 4555556666544432 11111112233
Q ss_pred CchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHc--CChHHHHHHHh---cCChhHHHHHHHHHHHhhcC
Q 043116 281 GALRYLLGLLIHNHNKSIKKEVCWIISNITAG-NREQIQAVIDA--GLIGPIVNLLQ---DAEFGTKKEAAWVISNATSG 354 (482)
Q Consensus 281 ~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~--~~i~~L~~ll~---~~~~~~~~~a~~aL~~l~~~ 354 (482)
+.+..++..--+-++.++...-...|..++.. ++..+..+++. .=+|..++.++ .+...+|.++-....|+...
T Consensus 118 nyVNsiI~hkFDfq~eEimaYYISFLktlS~KLN~hTihff~Nd~t~dFpLyvE~ikf~nh~EsMVRiAVRtitLNVykV 197 (864)
T KOG2219|consen 118 NYVNSIIVHKFDFQDEEIMAYYISFLKTLSGKLNKHTIHFFLNDHTNDFPLYVEAIKFFNHPESMVRIAVRTITLNVYKV 197 (864)
T ss_pred cceeeeEEEeecCCcHHHHHHHHHHHHHhhcccCcceeEEeeccccccchhHHHHHHHhcChHHHHHHHHHheeeeEEEe
Confidence 33333322211222555555555566666542 33333333331 12455555444 34444554444444455555
Q ss_pred CCHHHHHHHHHcCCh
Q 043116 355 GTHEQIKHLVREGCV 369 (482)
Q Consensus 355 ~~~~~~~~l~~~~~l 369 (482)
+++....++.+....
T Consensus 198 ~d~Sml~yi~~~ta~ 212 (864)
T KOG2219|consen 198 QDESMLDYIRDKTAT 212 (864)
T ss_pred CCHHHHHHHhcCcch
Confidence 555555555554433
No 438
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=20.63 E-value=9.3e+02 Score=24.73 Aligned_cols=98 Identities=14% Similarity=0.091 Sum_probs=65.4
Q ss_pred CCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCCh--hhhhhHHHH
Q 043116 124 SPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPF--NQIRPALRV 201 (482)
Q Consensus 124 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~--~~~~~~~~~ 201 (482)
+-++.+|..|...|+--+...|.+ +....++.+.--.| .+.+..++.....++..|+...|.... ...+..-..
T Consensus 286 Dv~d~IRv~c~~~L~dwi~lvP~y---f~k~~~lry~GW~L-SDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~r 361 (740)
T COG5537 286 DVDDVIRVLCSMSLRDWIGLVPDY---FRKILGLRYNGWSL-SDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDR 361 (740)
T ss_pred chhHHHHHHHHHHHHHHHhcchHH---HHhhhccccccccc-ccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 345677777777777666444432 33333444444444 566778899999999999998876652 233567777
Q ss_pred HHHHhccCChhHHHHHHHHHHHhc
Q 043116 202 LAQLIRSNDEKVLTDACRALAYLA 225 (482)
Q Consensus 202 L~~ll~~~~~~~~~~~l~~L~~l~ 225 (482)
+++++..+..-++..++..+..+.
T Consensus 362 ILE~~r~D~d~VRi~sik~l~~lr 385 (740)
T COG5537 362 ILEFLRTDSDCVRICSIKSLCYLR 385 (740)
T ss_pred HHHHHhhccchhhHHHHHHHHHHH
Confidence 888877665558888888777665
No 439
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.06 E-value=1.2e+03 Score=25.62 Aligned_cols=94 Identities=13% Similarity=0.011 Sum_probs=68.2
Q ss_pred CchHHHHHHhcCCCchhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCH
Q 043116 281 GALRYLLGLLIHNHNKSIKKEVCWIISNITA---GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTH 357 (482)
Q Consensus 281 ~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~ 357 (482)
+++..-..+|.++ +..+|..|..++.-..- ..++..-.++. ...|.++..+...++-+...|+.++.++...+..
T Consensus 803 kIl~r~~~~LS~e-~l~irvkaLdvl~~gl~~La~~~n~LlPlvh-q~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 803 KILGRGIHLLSHE-SLRIRVKALDVLSLGLPLLATYHNLLLPLVH-QTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHHhcch-hHHHHHHHHHHHHhccHHHhccchhHhHHHH-hhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhh
Confidence 4677788888888 88999998888775542 33343334443 5889999999999999999999999999987554
Q ss_pred HHHHHHHHcCChHHHHhcCC
Q 043116 358 EQIKHLVREGCVKPLCDLLP 377 (482)
Q Consensus 358 ~~~~~l~~~~~l~~L~~ll~ 377 (482)
.....+. ..++|.+..++.
T Consensus 881 Fv~sR~l-~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 881 FVASRFL-EDVLPWLKHLCQ 899 (1014)
T ss_pred HHHHHHH-HHHHHHHHHHHH
Confidence 4444433 346777765543
Done!