Query 043116
Match_columns 482
No_of_seqs 316 out of 2427
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 22:58:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043116.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043116hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ul1_B Importin subunit alpha- 100.0 3.3E-54 1.1E-58 427.1 49.2 420 28-454 58-482 (510)
2 3tpo_A Importin subunit alpha- 100.0 3.1E-53 1.1E-57 422.7 50.0 422 26-454 75-501 (529)
3 4b8j_A Importin subunit alpha- 100.0 3.2E-48 1.1E-52 388.1 51.1 435 25-460 72-506 (528)
4 1wa5_B Importin alpha subunit; 100.0 4.2E-46 1.4E-50 372.6 50.9 428 25-455 85-515 (530)
5 2jdq_A Importin alpha-1 subuni 100.0 9.1E-45 3.1E-49 356.3 47.2 426 28-455 21-448 (450)
6 3tpo_A Importin subunit alpha- 100.0 7.5E-41 2.6E-45 333.4 36.2 372 23-398 115-499 (529)
7 3ul1_B Importin subunit alpha- 100.0 3.6E-41 1.2E-45 333.7 33.2 372 23-398 96-480 (510)
8 3now_A UNC-45 protein, SD10334 100.0 1.9E-38 6.4E-43 320.2 32.8 367 27-401 377-787 (810)
9 3nmz_A APC variant protein; pr 100.0 4.4E-38 1.5E-42 301.2 32.1 374 18-398 23-452 (458)
10 1jdh_A Beta-catenin; beta-cate 100.0 5.1E-37 1.7E-41 307.5 40.9 402 25-448 99-528 (529)
11 1xm9_A Plakophilin 1; armadill 100.0 1.3E-37 4.3E-42 303.6 31.2 365 71-453 3-452 (457)
12 2z6h_A Catenin beta-1, beta-ca 100.0 9.2E-36 3.1E-40 304.2 45.3 397 25-443 96-520 (644)
13 1wa5_B Importin alpha subunit; 100.0 4.9E-37 1.7E-41 307.0 34.4 370 25-399 128-513 (530)
14 3now_A UNC-45 protein, SD10334 100.0 6.3E-37 2.1E-41 309.2 34.9 416 16-451 279-738 (810)
15 4b8j_A Importin subunit alpha- 100.0 3.2E-37 1.1E-41 308.4 32.7 371 25-400 115-500 (528)
16 1xm9_A Plakophilin 1; armadill 100.0 7.2E-38 2.5E-42 305.3 25.7 363 28-399 3-452 (457)
17 2jdq_A Importin alpha-1 subuni 100.0 4.2E-37 1.4E-41 301.7 30.7 366 27-397 64-444 (450)
18 3l6x_A Catenin delta-1; cateni 100.0 1.8E-36 6.2E-41 296.1 29.7 366 25-398 46-478 (584)
19 2z6g_A B-catenin; FULL-length, 100.0 1.6E-34 5.6E-39 299.2 44.2 407 25-453 232-666 (780)
20 1jdh_A Beta-catenin; beta-cate 100.0 1.2E-36 4E-41 304.9 24.3 434 23-477 55-526 (529)
21 3l6x_A Catenin delta-1; cateni 100.0 3.9E-35 1.3E-39 286.7 31.6 369 67-452 45-478 (584)
22 3nmz_A APC variant protein; pr 100.0 2.3E-35 7.9E-40 282.4 27.5 331 21-355 64-452 (458)
23 2z6h_A Catenin beta-1, beta-ca 100.0 1.5E-35 5.1E-40 302.6 26.3 433 24-477 53-523 (644)
24 2z6g_A B-catenin; FULL-length, 100.0 5.7E-35 2E-39 302.6 25.0 432 25-477 190-659 (780)
25 3nmw_A APC variant protein; AR 100.0 1.5E-30 5E-35 242.2 20.8 273 41-316 46-339 (354)
26 3nmw_A APC variant protein; AR 100.0 2.3E-29 8E-34 234.1 27.2 275 124-400 43-338 (354)
27 4hxt_A De novo protein OR329; 100.0 5.3E-27 1.8E-31 211.1 25.9 240 70-312 2-242 (252)
28 4hxt_A De novo protein OR329; 100.0 8.5E-27 2.9E-31 209.7 24.3 243 26-271 1-244 (252)
29 4db8_A Armadillo-repeat protei 100.0 4.8E-27 1.6E-31 211.4 21.2 239 70-311 12-251 (252)
30 4db8_A Armadillo-repeat protei 99.9 1.4E-26 4.7E-31 208.3 19.9 241 25-268 10-251 (252)
31 1xqr_A HSPBP1 protein; armadil 99.9 7.2E-25 2.5E-29 198.5 23.0 235 211-453 54-290 (296)
32 3opb_A SWI5-dependent HO expre 99.9 2.1E-24 7.3E-29 213.7 22.9 321 28-353 335-728 (778)
33 3opb_A SWI5-dependent HO expre 99.9 4.6E-23 1.6E-27 204.3 30.1 408 17-450 245-728 (778)
34 4db6_A Armadillo repeat protei 99.9 4.1E-23 1.4E-27 180.1 23.6 198 196-395 11-208 (210)
35 4db6_A Armadillo repeat protei 99.9 9.5E-23 3.2E-27 177.8 21.8 199 68-268 10-209 (210)
36 1xqr_A HSPBP1 protein; armadil 99.9 1.9E-21 6.4E-26 176.1 23.3 225 85-310 54-286 (296)
37 3tt9_A Plakophilin-2; cell adh 99.9 6.2E-21 2.1E-25 164.9 16.1 197 71-269 9-230 (233)
38 3tt9_A Plakophilin-2; cell adh 99.8 1.2E-20 4.1E-25 163.1 14.0 196 28-227 9-230 (233)
39 1b3u_A Protein (protein phosph 99.8 1.2E-17 4E-22 169.1 27.5 382 28-451 165-549 (588)
40 1b3u_A Protein (protein phosph 99.8 7.6E-18 2.6E-22 170.5 25.6 382 27-449 203-586 (588)
41 3grl_A General vesicular trans 99.8 5.6E-16 1.9E-20 149.8 36.9 417 26-455 59-555 (651)
42 4fdd_A Transportin-1; heat rep 99.8 3.5E-18 1.2E-22 180.4 20.7 355 28-400 91-475 (852)
43 4fdd_A Transportin-1; heat rep 99.8 3.7E-17 1.3E-21 172.5 24.1 396 27-450 45-471 (852)
44 2vgl_B AP-2 complex subunit be 99.7 3.4E-16 1.1E-20 157.6 25.7 341 28-400 50-423 (591)
45 3grl_A General vesicular trans 99.7 1.1E-14 3.9E-19 140.8 33.4 379 20-401 115-555 (651)
46 1oyz_A Hypothetical protein YI 99.7 2.7E-15 9.4E-20 136.5 23.1 258 67-392 20-278 (280)
47 2vgl_B AP-2 complex subunit be 99.7 1.1E-15 3.9E-20 153.7 21.2 374 29-448 123-530 (591)
48 1oyz_A Hypothetical protein YI 99.7 1.2E-14 4.2E-19 132.2 21.9 256 25-349 21-278 (280)
49 1qgr_A Protein (importin beta 99.6 3.7E-14 1.3E-18 150.4 26.1 396 28-449 173-678 (876)
50 2bpt_A Importin beta-1 subunit 99.6 4.5E-14 1.5E-18 149.5 26.0 355 27-398 324-713 (861)
51 2bpt_A Importin beta-1 subunit 99.6 2.6E-14 8.9E-19 151.3 24.2 396 28-448 180-625 (861)
52 1w63_A Adapter-related protein 99.6 6.9E-15 2.3E-19 148.5 18.6 362 27-450 107-490 (618)
53 1ibr_B P95, importin beta-1 su 99.6 2.2E-13 7.4E-18 133.4 24.4 391 29-452 3-439 (462)
54 1qgr_A Protein (importin beta 99.6 1.3E-13 4.6E-18 146.1 23.4 408 28-451 367-828 (876)
55 1w63_A Adapter-related protein 99.6 3.8E-13 1.3E-17 135.9 25.4 327 28-397 143-491 (618)
56 1u6g_C TIP120 protein, CAND1; 99.6 3E-13 1E-17 148.3 24.4 407 27-451 6-464 (1230)
57 1ibr_B P95, importin beta-1 su 99.6 2.6E-14 8.9E-19 140.0 13.7 361 26-400 34-441 (462)
58 1u6g_C TIP120 protein, CAND1; 99.5 7.6E-13 2.6E-17 145.1 20.1 398 28-449 87-547 (1230)
59 3ltm_A Alpha-REP4; protein eng 99.5 6E-12 2.1E-16 109.1 19.1 192 23-271 15-206 (211)
60 3ltm_A Alpha-REP4; protein eng 99.4 7.9E-12 2.7E-16 108.3 19.0 187 69-312 18-204 (211)
61 3ltj_A Alpharep-4; protein eng 99.4 2.7E-11 9.2E-16 104.1 21.3 185 113-353 14-198 (201)
62 3ltj_A Alpharep-4; protein eng 99.4 1.2E-11 4.2E-16 106.2 18.2 185 26-267 13-197 (201)
63 2vgl_A Adaptor protein complex 99.4 1.9E-10 6.4E-15 115.8 28.0 331 28-396 75-433 (621)
64 2vgl_A Adaptor protein complex 99.3 1.4E-08 4.7E-13 102.2 35.1 333 29-396 37-398 (621)
65 2db0_A 253AA long hypothetical 99.2 7.3E-09 2.5E-13 82.3 21.0 218 110-353 29-246 (253)
66 4gmo_A Putative uncharacterize 99.1 2.9E-09 9.8E-14 108.6 20.7 218 67-310 32-257 (684)
67 3tjz_B Coatomer subunit gamma; 99.1 1.3E-08 4.4E-13 93.4 20.5 276 29-349 70-349 (355)
68 3b2a_A TON_1937, putative unch 99.1 1.9E-08 6.3E-13 83.8 17.8 226 196-447 32-258 (265)
69 4ady_A RPN2, 26S proteasome re 99.0 7.1E-08 2.4E-12 98.4 24.4 273 28-356 393-679 (963)
70 2db0_A 253AA long hypothetical 99.0 4.7E-07 1.6E-11 72.1 21.7 214 196-449 31-245 (253)
71 4gmo_A Putative uncharacterize 98.9 4.6E-09 1.6E-13 107.1 13.1 196 198-397 36-259 (684)
72 3b2a_A TON_1937, putative unch 98.9 1E-07 3.4E-12 79.4 16.9 208 6-227 12-219 (265)
73 3tjz_B Coatomer subunit gamma; 98.9 8.5E-08 2.9E-12 88.0 17.3 315 28-391 27-348 (355)
74 4ady_A RPN2, 26S proteasome re 98.8 1.3E-06 4.5E-11 89.2 26.4 270 71-396 393-676 (963)
75 2qk2_A LP04448P; mini spindles 98.8 9.2E-08 3.2E-12 84.4 14.5 184 159-353 19-205 (242)
76 1ho8_A Vacuolar ATP synthase s 98.8 5.1E-06 1.7E-10 78.0 25.2 321 113-449 77-475 (480)
77 2qk2_A LP04448P; mini spindles 98.7 1.4E-07 4.7E-12 83.3 13.4 187 242-450 18-205 (242)
78 2qk1_A Protein STU2; STU2P, XM 98.7 6.2E-07 2.1E-11 79.0 15.1 191 161-353 22-220 (249)
79 2qk1_A Protein STU2; STU2P, XM 98.6 2.5E-07 8.5E-12 81.6 12.1 190 75-268 21-220 (249)
80 1ho8_A Vacuolar ATP synthase s 98.6 3.8E-05 1.3E-09 72.2 26.7 325 68-397 75-477 (480)
81 1wa5_C Importin alpha RE-expor 98.5 6.2E-05 2.1E-09 80.2 29.2 336 86-449 261-669 (960)
82 2iw3_A Elongation factor 3A; a 98.5 1.7E-05 5.8E-10 82.2 23.3 301 28-352 15-323 (986)
83 1te4_A Conserved protein MTH18 98.5 2.1E-08 7.1E-13 79.2 1.2 121 196-351 11-131 (131)
84 2x1g_F Cadmus; transport prote 98.5 3.3E-05 1.1E-09 82.5 25.5 393 39-448 256-720 (971)
85 1te4_A Conserved protein MTH18 98.5 6.6E-08 2.3E-12 76.3 3.3 122 68-224 10-131 (131)
86 1wa5_C Importin alpha RE-expor 98.5 0.00021 7.2E-09 76.2 30.9 343 30-397 88-526 (960)
87 3dad_A FH1/FH2 domain-containi 98.4 1.2E-05 4.1E-10 71.7 15.4 187 243-438 122-324 (339)
88 3dad_A FH1/FH2 domain-containi 98.4 2E-05 6.9E-10 70.2 16.5 188 198-386 119-326 (339)
89 2x19_B Importin-13; nuclear tr 98.3 0.00037 1.3E-08 74.4 28.8 400 28-449 242-713 (963)
90 4hat_C Exportin-1; heat repeat 98.3 0.00036 1.2E-08 74.0 27.6 350 29-399 196-621 (1023)
91 2x1g_F Cadmus; transport prote 98.3 0.00023 7.9E-09 76.1 26.3 392 25-451 37-536 (971)
92 2iw3_A Elongation factor 3A; a 98.2 0.00044 1.5E-08 71.8 25.1 299 75-400 19-328 (986)
93 3m1i_C Exportin-1; heat repeat 98.2 0.0033 1.1E-07 67.6 32.2 356 27-400 138-573 (1049)
94 3m1i_C Exportin-1; heat repeat 98.1 0.00092 3.1E-08 71.9 26.5 352 30-398 197-620 (1049)
95 2x19_B Importin-13; nuclear tr 98.1 0.00092 3.2E-08 71.4 25.0 338 80-451 459-847 (963)
96 4hat_C Exportin-1; heat repeat 98.0 0.002 6.8E-08 68.4 25.4 388 39-450 465-929 (1023)
97 3ibv_A Exportin-T; karyopherin 97.8 0.0014 4.7E-08 69.5 20.4 307 81-400 204-570 (980)
98 3ibv_A Exportin-T; karyopherin 97.6 0.00048 1.6E-08 72.9 13.9 304 38-356 204-569 (980)
99 1upk_A MO25 protein; transfera 97.6 0.033 1.1E-06 49.7 22.5 200 150-354 73-284 (341)
100 2fv2_A RCD1 required for cell 97.6 0.0086 2.9E-07 51.0 17.9 185 210-397 14-225 (268)
101 3gjx_A Exportin-1; transport, 97.5 0.049 1.7E-06 57.8 26.4 357 28-401 151-600 (1073)
102 3gjx_A Exportin-1; transport, 97.5 0.05 1.7E-06 57.7 26.1 305 31-355 210-597 (1073)
103 2of3_A ZYG-9; multifunctional 97.4 0.0054 1.8E-07 53.5 14.6 180 202-398 51-238 (266)
104 2of3_A ZYG-9; multifunctional 97.4 0.0084 2.9E-07 52.3 15.6 178 116-311 49-236 (266)
105 1upk_A MO25 protein; transfera 97.3 0.015 5.1E-07 51.9 17.1 207 233-453 72-286 (341)
106 3oc3_A Helicase MOT1, MOT1; re 97.3 0.00036 1.2E-08 66.1 7.0 249 23-306 170-431 (800)
107 4ffb_C Protein STU2; tubulin f 97.3 0.016 5.5E-07 51.7 17.1 191 244-453 14-215 (278)
108 3u0r_A Apoptosis inhibitor 5; 97.2 0.046 1.6E-06 51.2 19.2 257 118-399 34-301 (507)
109 3c2g_A SYS-1 protein; beta-cat 97.2 0.041 1.4E-06 48.9 17.6 312 90-448 262-616 (619)
110 4ffb_C Protein STU2; tubulin f 97.2 0.0063 2.2E-07 54.3 13.3 186 160-354 14-213 (278)
111 3oc3_A Helicase MOT1, MOT1; re 96.9 0.0069 2.4E-07 57.7 11.3 244 71-349 175-432 (800)
112 2fv2_A RCD1 required for cell 96.9 0.046 1.6E-06 46.6 14.8 196 252-451 14-225 (268)
113 3u0r_A Apoptosis inhibitor 5; 96.7 0.39 1.3E-05 45.1 24.3 299 73-401 32-363 (507)
114 2f31_A Diaphanous protein homo 96.3 0.073 2.5E-06 45.8 12.9 175 228-442 33-220 (233)
115 1lrv_A LRV, leucine-rich repea 96.3 0.0023 7.8E-08 55.5 3.3 89 245-390 152-240 (244)
116 1lrv_A LRV, leucine-rich repea 96.2 0.0015 5E-08 56.7 1.9 64 34-135 57-120 (244)
117 3l9t_A Putative uncharacterize 96.2 0.15 5.2E-06 43.1 13.8 142 159-322 74-218 (240)
118 3l9t_A Putative uncharacterize 95.9 0.33 1.1E-05 41.1 14.4 145 71-237 72-218 (240)
119 1lsh_A Lipovitellin (LV-1N, LV 95.8 0.46 1.6E-05 50.7 18.8 173 157-358 393-581 (1056)
120 3ebb_A Phospholipase A2-activa 95.6 0.98 3.3E-05 40.3 17.3 186 72-263 105-300 (304)
121 3a6p_A Exportin-5; exportin-5, 95.5 1.7 5.7E-05 47.3 22.3 283 85-397 27-381 (1204)
122 2f31_A Diaphanous protein homo 95.0 0.94 3.2E-05 38.8 15.0 96 47-144 21-127 (233)
123 3ebb_A Phospholipase A2-activa 95.0 0.16 5.4E-06 45.5 10.3 111 75-186 152-264 (304)
124 3c2g_A SYS-1 protein; beta-cat 94.9 0.51 1.8E-05 42.1 12.7 155 222-378 267-449 (619)
125 3eg5_B Protein diaphanous homo 94.9 1.2 4.2E-05 41.2 16.3 156 30-187 69-248 (383)
126 3eg5_B Protein diaphanous homo 94.7 0.62 2.1E-05 43.3 13.8 160 272-439 101-283 (383)
127 2bnx_A Diaphanous protein homo 94.7 2.7 9.3E-05 39.0 19.1 175 227-440 36-222 (386)
128 2bnx_A Diaphanous protein homo 93.3 4.3 0.00015 37.6 16.7 140 47-188 25-187 (386)
129 3qml_C Protein SLS1, nucleotid 93.1 1 3.5E-05 39.6 11.1 136 253-396 42-189 (315)
130 3a6p_A Exportin-5; exportin-5, 93.1 12 0.0004 40.8 25.8 288 39-354 25-381 (1204)
131 1lsh_A Lipovitellin (LV-1N, LV 93.1 2.2 7.7E-05 45.5 16.2 135 196-350 390-540 (1056)
132 1vdy_A Hypothetical protein (R 93.0 0.25 8.4E-06 38.1 6.4 79 368-457 50-137 (140)
133 3gs3_A Symplekin, LD45768P; he 92.3 5.2 0.00018 34.6 22.1 99 32-141 20-118 (257)
134 3qml_C Protein SLS1, nucleotid 91.5 4.1 0.00014 35.8 12.9 151 196-352 21-188 (315)
135 3ldz_A STAM-1, signal transduc 90.5 0.45 1.6E-05 36.9 5.5 73 325-397 43-115 (140)
136 3o2t_A Symplekin; heat repeat, 90.3 11 0.00037 34.7 19.7 89 42-141 40-128 (386)
137 3g2s_A C-terminal fragment of 89.9 0.65 2.2E-05 36.4 5.9 74 325-398 49-128 (149)
138 1mhq_A ADP-ribosylation factor 89.6 1.2 4.2E-05 34.8 7.4 72 325-396 39-116 (148)
139 3gs3_A Symplekin, LD45768P; he 88.5 11 0.00039 32.4 15.8 140 297-449 30-172 (257)
140 1x5b_A Signal transducing adap 88.2 0.91 3.1E-05 36.3 5.8 72 325-396 53-125 (163)
141 3o2t_A Symplekin; heat repeat, 87.8 2.7 9.2E-05 38.7 9.4 139 298-449 41-182 (386)
142 2npp_B PP2A, B subunit, serine 86.6 21 0.00073 33.5 17.7 236 105-354 154-400 (449)
143 1x5b_A Signal transducing adap 85.5 1.2 4.1E-05 35.5 5.2 74 27-100 52-125 (163)
144 2npp_B PP2A, B subunit, serine 85.5 18 0.00062 34.0 13.7 239 64-319 156-407 (449)
145 1juq_A ADP-ribosylation factor 85.4 1.6 5.3E-05 35.2 5.8 72 325-396 51-128 (171)
146 3ldz_A STAM-1, signal transduc 84.7 0.91 3.1E-05 35.2 4.0 73 27-100 42-114 (140)
147 3fga_B Serine/threonine-protei 84.6 25 0.00085 32.5 18.8 237 103-353 119-366 (403)
148 1mhq_A ADP-ribosylation factor 84.3 1.6 5.5E-05 34.2 5.3 75 26-100 37-116 (148)
149 3fga_B Serine/threonine-protei 84.0 18 0.00061 33.4 12.8 225 71-312 130-367 (403)
150 3g2s_A C-terminal fragment of 83.3 1.9 6.6E-05 33.7 5.3 73 27-100 48-126 (149)
151 1vsy_5 Proteasome activator BL 83.0 33 0.0011 36.2 16.0 272 162-451 514-874 (997)
152 1juq_A ADP-ribosylation factor 80.7 4.6 0.00016 32.4 6.8 71 368-449 51-127 (171)
153 2jak_A Serine/threonine-protei 79.2 26 0.00088 32.2 12.0 127 104-231 165-293 (392)
154 3zyq_A Hepatocyte growth facto 77.9 1.6 5.6E-05 37.0 3.5 74 27-100 45-118 (226)
155 3zyq_A Hepatocyte growth facto 77.1 3.4 0.00012 35.0 5.3 73 325-397 46-119 (226)
156 1vsy_5 Proteasome activator BL 75.4 15 0.0005 38.9 10.5 187 114-311 134-365 (997)
157 1elk_A Target of MYB1; superhe 74.5 7.3 0.00025 30.7 6.2 73 325-397 54-131 (157)
158 1dvp_A HRS, hepatocyte growth 73.9 2.3 8E-05 35.9 3.4 73 27-99 42-114 (220)
159 1vdy_A Hypothetical protein (R 72.4 9.6 0.00033 29.3 6.2 74 325-398 50-132 (140)
160 2b6c_A Hypothetical protein EF 67.8 45 0.0015 27.9 10.1 134 166-322 65-199 (220)
161 3pst_A Protein DOA1; protein d 66.5 17 0.0006 33.7 7.7 131 88-229 243-392 (425)
162 1dvp_A HRS, hepatocyte growth 64.7 11 0.00037 31.7 5.6 73 325-397 43-116 (220)
163 3s4w_B Protein FACD2, fanconi 64.5 1.6E+02 0.0056 31.9 18.5 108 239-353 396-507 (1323)
164 3l3f_X Protein DOA1, DOA1/UFD3 62.5 16 0.00054 33.3 6.5 130 88-228 180-328 (362)
165 1elk_A Target of MYB1; superhe 61.8 11 0.00038 29.6 4.9 74 27-100 53-130 (157)
166 1w9c_A CRM1 protein, exportin 60.0 94 0.0032 27.6 16.8 180 253-449 43-244 (321)
167 3gae_A Protein DOA1; UFD3, CDC 59.0 36 0.0012 29.2 8.0 102 122-227 99-218 (253)
168 3pst_A Protein DOA1; protein d 58.8 52 0.0018 30.6 9.3 130 214-353 243-389 (425)
169 3gae_A Protein DOA1; UFD3, CDC 58.4 33 0.0011 29.4 7.6 130 214-353 71-217 (253)
170 2jak_A Serine/threonine-protei 55.5 64 0.0022 29.6 9.3 25 239-263 338-362 (392)
171 3l3f_X Protein DOA1, DOA1/UFD3 54.4 56 0.0019 29.7 8.6 130 214-353 180-326 (362)
172 3rru_A TOM1L1 protein; structu 53.3 22 0.00077 27.7 5.2 74 325-398 54-132 (152)
173 2b6c_A Hypothetical protein EF 47.4 1.2E+02 0.0041 25.1 9.8 134 242-400 58-192 (220)
174 2xpp_A IWS1, ECU08_0440; trans 45.9 1E+02 0.0034 23.7 8.1 77 231-311 53-136 (145)
175 3ut4_A CTHE_2751, putative unc 45.2 48 0.0016 25.1 5.6 96 325-452 32-132 (134)
176 3vld_A DNA mismatch repair pro 44.7 2.1E+02 0.0072 27.1 13.7 144 28-186 74-226 (500)
177 3jxy_A Alkylpurine DNA glycosy 42.8 41 0.0014 28.3 5.7 77 240-324 132-208 (232)
178 1w9c_A CRM1 protein, exportin 41.9 1.9E+02 0.0064 25.7 14.5 162 127-293 43-227 (321)
179 1wjt_A Transcription elongatio 35.7 69 0.0024 22.9 5.0 35 414-448 47-82 (103)
180 3jxy_A Alkylpurine DNA glycosy 34.0 2.1E+02 0.0071 23.9 9.7 133 243-400 65-199 (232)
181 3s4w_B Protein FACD2, fanconi 31.4 5.5E+02 0.019 28.0 20.3 265 115-396 194-507 (1323)
182 1t06_A Hypothetical protein; s 30.6 1.2E+02 0.004 25.6 6.6 76 241-322 110-191 (235)
183 3rru_A TOM1L1 protein; structu 29.3 39 0.0013 26.3 3.1 75 26-100 52-130 (152)
184 3nfq_A Transcription factor IW 29.3 2.1E+02 0.0073 22.6 8.8 78 230-311 67-151 (170)
185 4atg_A TAF6; transcription, TF 26.8 1.5E+02 0.005 24.2 6.1 111 113-225 40-161 (196)
186 1vsy_4 Proteasome activator BL 25.3 5.6E+02 0.019 26.2 19.5 101 166-268 349-455 (799)
187 1vsy_4 Proteasome activator BL 24.4 3.9E+02 0.013 27.3 10.2 116 105-226 332-455 (799)
188 1sz9_A PCF11 protein; RNA poly 24.3 2.4E+02 0.0082 21.5 9.2 71 282-353 44-114 (144)
189 4flb_A Regulation of nuclear P 22.6 1.4E+02 0.0047 22.3 5.1 60 157-226 10-69 (132)
190 4fu3_A Regulation of nuclear P 20.8 2.6E+02 0.0088 20.8 6.4 57 159-225 11-67 (135)
191 4atg_A TAF6; transcription, TF 20.1 3.5E+02 0.012 21.9 9.0 111 156-267 41-161 (196)
No 1
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=3.3e-54 Score=427.10 Aligned_cols=420 Identities=47% Similarity=0.772 Sum_probs=389.3
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHH
Q 043116 28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTK 107 (482)
Q Consensus 28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 107 (482)
.++.+++.++|+|+..|..|+..++++++.+++++++.+++.|++|.|+++|++.+++++|..|+|+|+|++.++++.+.
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 58999999999999999999999999998887888999999999999999998766589999999999999999999999
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchh----hhhHHHHHHHHHHHh
Q 043116 108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHA----KLSMLRTATWTLSNF 183 (482)
Q Consensus 108 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~----~~~~~~~a~~~L~~L 183 (482)
.+++.|++|.|+.+|.++++.+++.|+|+|+|++.+.+.+++.+.+.|++++++.++.... ...+++.++|+++++
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999995432 235688899999999
Q ss_pred hcCC-CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHH
Q 043116 184 CRGK-PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRT 262 (482)
Q Consensus 184 ~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~ 262 (482)
+... +........+++|.|+.++.+++++++..++++|++++...++..+.+.+.|+++.|+.++.++++.++..++++
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~a 297 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHH
Confidence 9987 555556668999999999999999999999999999999888888888999999999999999999999999999
Q ss_pred HhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHH
Q 043116 263 IGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKK 342 (482)
Q Consensus 263 L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~ 342 (482)
|+|++.+++.....+++.|+++.|+.++.++ +..+++.|+|+|+|++.++++..+.+.+.|+++.|+.++.+++.++++
T Consensus 298 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~ 376 (510)
T 3ul1_B 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK 376 (510)
T ss_dssp HHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred HHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHH
Confidence 9999999999889999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhch
Q 043116 343 EAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEG 422 (482)
Q Consensus 343 ~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 422 (482)
.|+|+|+|++..++.++..++.+.|+++.|+++++++|++++..++++|.++++.++.. ...+.++..|+++||
T Consensus 377 ~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~------~~~~~~~~~iee~gg 450 (510)
T 3ul1_B 377 EAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL------GETEKLSIMIEECGG 450 (510)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTT------TCHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhc------cchHHHHHHHHHcCc
Confidence 99999999999889999999999999999999999999999999999999999987764 345778999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 043116 423 LEKIENLQSHDNNDIHEMSVKILETYWCGRVV 454 (482)
Q Consensus 423 ~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 454 (482)
+++|+.|++++|++||++|.++|++||+++++
T Consensus 451 l~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~ 482 (510)
T 3ul1_B 451 LDKIEALQRHENESVYKASLNLIEKYFSVEEE 482 (510)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence 99999999999999999999999999987654
No 2
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=3.1e-53 Score=422.68 Aligned_cols=422 Identities=46% Similarity=0.756 Sum_probs=390.0
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh
Q 043116 26 FEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN 105 (482)
Q Consensus 26 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~ 105 (482)
...++.+++.++|+|+..+..|+..++++++.+.+++.+.+++.|++|.|+++|+..++++++..|+|+|+|++.++++.
T Consensus 75 ~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~ 154 (529)
T 3tpo_A 75 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 154 (529)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 34689999999999999999999999999988778889999999999999999987666899999999999999999999
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchh----hhhHHHHHHHHHH
Q 043116 106 TKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHA----KLSMLRTATWTLS 181 (482)
Q Consensus 106 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~----~~~~~~~a~~~L~ 181 (482)
+..+++.|+++.|+.++.++++.+++.|+|+|+||+.+++.++..+.+.|++++++.++.... ...+.+.++|+++
T Consensus 155 ~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~ 234 (529)
T 3tpo_A 155 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 234 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999995432 2356888999999
Q ss_pred HhhcCC-CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHH
Q 043116 182 NFCRGK-PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAAL 260 (482)
Q Consensus 182 ~L~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~ 260 (482)
+++... +........+++|.|+.++.+++++++..++++|++++...++..+.+.+.|+++.|+.+|.++++.++..++
T Consensus 235 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~ 314 (529)
T 3tpo_A 235 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 314 (529)
T ss_dssp HHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred HHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHH
Confidence 999987 5555666789999999999999999999999999999998888888899999999999999999999999999
Q ss_pred HHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhH
Q 043116 261 RTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGT 340 (482)
Q Consensus 261 ~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~ 340 (482)
++|+|++.+++.....+++.|+++.|+.++.++ ++.++++|+|+|+|++.+++.....+.+.|+++.|+.++.+++.++
T Consensus 315 ~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v 393 (529)
T 3tpo_A 315 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT 393 (529)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHH
Confidence 999999998998889999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHh
Q 043116 341 KKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEA 420 (482)
Q Consensus 341 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 420 (482)
+..|+|+|+|++..+++++...+.+.|+++.|+++|+++|++++..++++|.+++..++.. ...+.++..|+++
T Consensus 394 ~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~------~~~~~~~~~iee~ 467 (529)
T 3tpo_A 394 QKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL------GETEKLSIMIEEC 467 (529)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTT------TCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhc------cChHHHHHHHHHC
Confidence 9999999999999889999999999999999999999999999999999999999987764 2357789999999
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 043116 421 EGLEKIENLQSHDNNDIHEMSVKILETYWCGRVV 454 (482)
Q Consensus 421 ~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 454 (482)
||++.|+.|++|+|.+||++|..+|++||.++++
T Consensus 468 ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~ 501 (529)
T 3tpo_A 468 GGLDKIEALQRHENESVYKASLNLIEKYFSVEEE 501 (529)
T ss_dssp TCHHHHTGGGGCSSHHHHHHHHHHHHHHC-----
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence 9999999999999999999999999999986654
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=3.2e-48 Score=388.10 Aligned_cols=435 Identities=75% Similarity=1.137 Sum_probs=392.3
Q ss_pred hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChH
Q 043116 25 KFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSE 104 (482)
Q Consensus 25 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~ 104 (482)
....+|.|++.++++++.++..|++.|.++++....+....++..|++|.|+++|.+++++.++..|+++|++++.++++
T Consensus 72 ~~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 72 KLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp ---CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 44569999999999999999999999999988764577899999999999999999876589999999999999998899
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhh
Q 043116 105 NTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFC 184 (482)
Q Consensus 105 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~ 184 (482)
.+..+++.|+++.|+.++.++++.++..|+|+|++++.+.+..+..+.+.|+++.|+.++..+.+..++..++|+|.+|+
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888889999999999999999977778899999999999999
Q ss_pred cCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHh
Q 043116 185 RGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIG 264 (482)
Q Consensus 185 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 264 (482)
...+........+++|.|+.++.+++++++..++++|++++...+...+.+.+.|+++.|+.+|.++++.++..|+++|+
T Consensus 232 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~ 311 (528)
T 4b8j_A 232 RGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVG 311 (528)
T ss_dssp CSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHH
Confidence 98777777777999999999999999999999999999999888888888999999999999999999999999999999
Q ss_pred HhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHH
Q 043116 265 NIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEA 344 (482)
Q Consensus 265 ~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a 344 (482)
+++.+++.....+++.|+++.|+.+|.++.++.++..|+|+|+|++.++++.++.+++.|+++.|+.++.++++.++..|
T Consensus 312 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a 391 (528)
T 4b8j_A 312 NIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEA 391 (528)
T ss_dssp HHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 99998888888899999999999999987678999999999999999888888999999999999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHH
Q 043116 345 AWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLE 424 (482)
Q Consensus 345 ~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 424 (482)
+++|++++..++++....+.+.|+++.|+.++.+++++++..++++|.+++...+....... ...+++...+.+.|+++
T Consensus 392 ~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~ 470 (528)
T 4b8j_A 392 AWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAA-GDVNVFSQMIDEAEGLE 470 (528)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHT-CSCCHHHHHHHHTTHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccc-ccccHHHHHHHHCCcHH
Confidence 99999999987889999999999999999999999999999999999999988766432111 13567899999999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 043116 425 KIENLQSHDNNDIHEMSVKILETYWCGRVVGPQPGL 460 (482)
Q Consensus 425 ~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~ 460 (482)
.|..+++++++++++.|..++++||..++.++.++.
T Consensus 471 ~l~~L~~~~~~~v~~~a~~il~~~~~~e~~~~~~~~ 506 (528)
T 4b8j_A 471 KIENLQSHDNNEIYEKAVKILEAYWMDEEDDTMGAT 506 (528)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCCccccccccc
Confidence 999999999999999999999999998877655544
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=4.2e-46 Score=372.62 Aligned_cols=428 Identities=54% Similarity=0.808 Sum_probs=388.3
Q ss_pred hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChH
Q 043116 25 KFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSE 104 (482)
Q Consensus 25 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~ 104 (482)
..+.++.+++.++++++..+..|++.|.++++....+....++..|++|.|+++|.+++++.++..|+++|++++.++++
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 44679999999999999999999999999988654566788899999999999999973389999999999999998889
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhh
Q 043116 105 NTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFC 184 (482)
Q Consensus 105 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~ 184 (482)
.+..+++.|+++.|+.++.++++.+++.|+|+|++++.+.+..+..+...|+++.|+.++ .+.+..++..++|+|.+|+
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~ 243 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLC 243 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988888899999999999999999 4578899999999999999
Q ss_pred cCC-CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHH
Q 043116 185 RGK-PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTI 263 (482)
Q Consensus 185 ~~~-~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L 263 (482)
... +........+++|.|+.++.++++.++..++++|.+++...++....+.+.|+++.|+.++.++++.++..|+++|
T Consensus 244 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L 323 (530)
T 1wa5_B 244 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAV 323 (530)
T ss_dssp CCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHH
Confidence 886 6666667789999999999999999999999999999988887788888899999999999999999999999999
Q ss_pred hHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHH
Q 043116 264 GNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKE 343 (482)
Q Consensus 264 ~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~ 343 (482)
++++.+++.....+++.|+++.|+.+|.++ ++.++..|+|+|+|++.++++..+.+++.|+++.|+.++.++++.++..
T Consensus 324 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~ 402 (530)
T 1wa5_B 324 GNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKE 402 (530)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence 999998888888889999999999999999 9999999999999999988888889999999999999999999999999
Q ss_pred HHHHHHHhhcCCCH--HHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhc
Q 043116 344 AAWVISNATSGGTH--EQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAE 421 (482)
Q Consensus 344 a~~aL~~l~~~~~~--~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 421 (482)
|+++|++++..+++ +....+.+.|+++.|+.++.+++++++..++++|.+++..++...... ....++++..+.+.|
T Consensus 403 a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~-~~~~~~~~~~l~~~g 481 (530)
T 1wa5_B 403 ACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEAR-GLNINENADFIEKAG 481 (530)
T ss_dssp HHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHH-TCSSCHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcc-cccccHHHHHHHHcC
Confidence 99999999987666 788888999999999999999999999999999999998876532100 012457899999999
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 043116 422 GLEKIENLQSHDNNDIHEMSVKILETYWCGRVVG 455 (482)
Q Consensus 422 ~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 455 (482)
+++.|..|+.++++++++.|..+|++||.+++.+
T Consensus 482 ~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~~ 515 (530)
T 1wa5_B 482 GMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDA 515 (530)
T ss_dssp HHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC--
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence 9999999999999999999999999999987764
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=9.1e-45 Score=356.28 Aligned_cols=426 Identities=56% Similarity=0.884 Sum_probs=382.7
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhc-CCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH
Q 043116 28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQS-GVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT 106 (482)
Q Consensus 28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 106 (482)
.++.+++.++++++.++..|+..|.++++....+....++.. |+++.|++++++++++.++..|+++|.+++.++++..
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 489999999999999999999999998764335556778887 9999999999998338999999999999999888888
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcC
Q 043116 107 KVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG 186 (482)
Q Consensus 107 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~ 186 (482)
..+++.|+++.|+.++.++++.+++.|+++|++++.+.+..+..+.+.|+++.++.++.++.+..++..++|+|.+++..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 88899999999999999999999999999999999888888899999999999999996557889999999999999987
Q ss_pred C-CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 043116 187 K-PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGN 265 (482)
Q Consensus 187 ~-~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 265 (482)
. +........+++|.++.++.++++.++..++++|.+++...++....+.+.|+++.++.++.++++.++..|+++|++
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 6 555566668999999999999999999999999999998877777788889999999999999999999999999999
Q ss_pred hhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHH
Q 043116 266 IVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAA 345 (482)
Q Consensus 266 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~ 345 (482)
++.+.+...+.+.+.|+++.++.++.++ ++.++..|+|+|+|++.++++..+.+++.|+++.|++++.+++++++..|+
T Consensus 261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~ 339 (450)
T 2jdq_A 261 IVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA 339 (450)
T ss_dssp HTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred HhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 9998888778888999999999999998 999999999999999988888888899999999999999999999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHH
Q 043116 346 WVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEK 425 (482)
Q Consensus 346 ~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 425 (482)
++|++++..++++....+.+.|+++.|++++++++++++..++++|.+++..++...... ....+++...+.+.|+++.
T Consensus 340 ~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~-~~~~~~~~~~l~~~g~~~~ 418 (450)
T 2jdq_A 340 WAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRN-GTGINPYCALIEEAYGLDK 418 (450)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHS-CSCCCHHHHHHHHHHCHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhcc-ccchhHHHHHHHHcCcHHH
Confidence 999999987678888888899999999999999999999999999999998776532110 0124578999999999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 043116 426 IENLQSHDNNDIHEMSVKILETYWCGRVVG 455 (482)
Q Consensus 426 l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 455 (482)
|..++++++.++++.|..++++||++++++
T Consensus 419 l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 448 (450)
T 2jdq_A 419 IEFLQSHENQEIYQKAFDLIEHYFGTEDED 448 (450)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHCCC---
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence 999999999999999999999999887654
No 6
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=7.5e-41 Score=333.41 Aligned_cols=372 Identities=24% Similarity=0.358 Sum_probs=330.0
Q ss_pred hhhhccHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCC
Q 043116 23 QSKFEILPTMVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASG 101 (482)
Q Consensus 23 ~~~~~~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 101 (482)
....|.+|.|+++|+ ++++.++..|+|+|.+++++. ......+++.|++|.|+.++.+++ +++++.|+|+|+|++.+
T Consensus 115 ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~ 192 (529)
T 3tpo_A 115 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGA 192 (529)
T ss_dssp HHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcc
Confidence 446789999999997 556999999999999999886 566788999999999999999999 99999999999999999
Q ss_pred ChHhHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHH
Q 043116 102 TSENTKVAIDHGAVPIFVKLLASPS-----DDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTA 176 (482)
Q Consensus 102 ~~~~~~~~~~~g~i~~L~~ll~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a 176 (482)
+++.+..+.+.|+++.|+.++...+ ..+.+.++|++++++.+...........++++.|+.++ .+.+++++..+
T Consensus 193 ~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a 271 (529)
T 3tpo_A 193 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADS 271 (529)
T ss_dssp CHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHH
T ss_pred CHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHH
Confidence 9999999999999999999998654 45778999999999976654444455567899999999 77888999999
Q ss_pred HHHHHHhhcCCCCCC-hhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhh
Q 043116 177 TWTLSNFCRGKPQPP-FNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLV 255 (482)
Q Consensus 177 ~~~L~~L~~~~~~~~-~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v 255 (482)
+|+|.+++...+... .....|++|.|+.++.++++.++..++++|++++.+++.....+.+.|+++.|+.++.++++.+
T Consensus 272 ~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i 351 (529)
T 3tpo_A 272 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI 351 (529)
T ss_dssp HHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHH
T ss_pred HHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHH
Confidence 999999998763322 2334689999999999999999999999999999998888889999999999999999999999
Q ss_pred HHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHh
Q 043116 256 LTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA-GNREQIQAVIDAGLIGPIVNLLQ 334 (482)
Q Consensus 256 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~ 334 (482)
+..|+|+|+|++.+++.....+.+.|+++.|+.++.++ +.+++++|+|+|+|++. ++++.+..+++.|+++.|+++|.
T Consensus 352 ~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~ 430 (529)
T 3tpo_A 352 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 430 (529)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhc
Confidence 99999999999999999889999999999999999999 99999999999999997 67888899999999999999999
Q ss_pred cCChhHHHHHHHHHHHhhcC----CC-HHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhc
Q 043116 335 DAEFGTKKEAAWVISNATSG----GT-HEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVG 398 (482)
Q Consensus 335 ~~~~~~~~~a~~aL~~l~~~----~~-~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~ 398 (482)
+.+++++..++++|.++... +. ......+.+.|+++.|..+..+++.+++.+|..+|.++|...
T Consensus 431 ~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~ 499 (529)
T 3tpo_A 431 AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE 499 (529)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC---
T ss_pred CCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 99999999999999999742 22 334456678899999999999999999999999999998643
No 7
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=3.6e-41 Score=333.67 Aligned_cols=372 Identities=24% Similarity=0.363 Sum_probs=329.1
Q ss_pred hhhhccHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCC
Q 043116 23 QSKFEILPTMVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASG 101 (482)
Q Consensus 23 ~~~~~~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 101 (482)
....|+||.|+++|+ ++++.+|..|+|+|.|+++++ .+..+.+++.|++|.|+.+|++++ +++++.|+|+|+|++.+
T Consensus 96 ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d 173 (510)
T 3ul1_B 96 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGD 173 (510)
T ss_dssp HHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhC
Confidence 345689999999997 556999999999999999876 677888999999999999999999 99999999999999999
Q ss_pred ChHhHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHH
Q 043116 102 TSENTKVAIDHGAVPIFVKLLASPS-----DDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTA 176 (482)
Q Consensus 102 ~~~~~~~~~~~g~i~~L~~ll~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a 176 (482)
+++.+..+.+.|+++.|+.++...+ ..+.+.++|++++++.............++++.|+.++ .+.+.+++..+
T Consensus 174 ~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A 252 (510)
T 3ul1_B 174 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADS 252 (510)
T ss_dssp CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHH
T ss_pred CHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHH
Confidence 9999999999999999999998654 45778899999999976644444445567889999999 77888999999
Q ss_pred HHHHHHhhcCCCCCC-hhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhh
Q 043116 177 TWTLSNFCRGKPQPP-FNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLV 255 (482)
Q Consensus 177 ~~~L~~L~~~~~~~~-~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v 255 (482)
+|+|.+|+...+... .....|+++.|+.++.++++.++..++++|++++..++.....+.+.|+++.|+.+|.++++.+
T Consensus 253 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v 332 (510)
T 3ul1_B 253 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI 332 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHH
T ss_pred HHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHH
Confidence 999999998753322 2234689999999999999999999999999999999888889999999999999999999999
Q ss_pred HHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHh
Q 043116 256 LTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA-GNREQIQAVIDAGLIGPIVNLLQ 334 (482)
Q Consensus 256 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~ 334 (482)
+..|+|+|+|++.+++.....+.+.|+++.|+.++.++ +.++|++|+|+|+|++. ++++++..+++.|+++.|+++|.
T Consensus 333 ~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~ 411 (510)
T 3ul1_B 333 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 411 (510)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhc
Confidence 99999999999999999899999999999999999999 99999999999999998 67888899999999999999999
Q ss_pred cCChhHHHHHHHHHHHhhcC----C-CHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhc
Q 043116 335 DAEFGTKKEAAWVISNATSG----G-THEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVG 398 (482)
Q Consensus 335 ~~~~~~~~~a~~aL~~l~~~----~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~ 398 (482)
+.+++++..++++|.|+... + .......+.+.|+++.|..+..+++.+++++|..+|.++|...
T Consensus 412 ~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~ 480 (510)
T 3ul1_B 412 AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE 480 (510)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred CCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 99999999999999999752 1 2334555667899999999999999999999999999998643
No 8
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.9e-38 Score=320.25 Aligned_cols=367 Identities=15% Similarity=0.137 Sum_probs=318.0
Q ss_pred ccHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHH-hcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCCh
Q 043116 27 EILPTMVAGVWSD--DNKVQLEATTLFRKMLSFDRNSPIEKVI-QSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTS 103 (482)
Q Consensus 27 ~~i~~l~~~l~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~ 103 (482)
..++.++++|.++ +++++..|++.|.+++... +....++ +.|++|.|+.++++++ +.++..|+++|+|++.+.+
T Consensus 377 ~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~--~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d 453 (810)
T 3now_A 377 KLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDA--ECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYE 453 (810)
T ss_dssp HHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSH--HHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCc--HHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCch
Confidence 4478889999877 8999999999999998763 4455555 6899999999999988 8999999999999998542
Q ss_pred -----------------------------HhH---HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 043116 104 -----------------------------ENT---KVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151 (482)
Q Consensus 104 -----------------------------~~~---~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 151 (482)
..+ +.+++.|+++.|+.++.++++.+++.|+|+|+|++. ++.++..+
T Consensus 454 ~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~V 532 (810)
T 3now_A 454 KQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKV 532 (810)
T ss_dssp CCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHH
Confidence 122 678899999999999999999999999999999995 46689999
Q ss_pred HHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCC-h--hhhhhHHHHHHHHhccCC-hhHHHHHHHHHHHhccC
Q 043116 152 LSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPP-F--NQIRPALRVLAQLIRSND-EKVLTDACRALAYLADG 227 (482)
Q Consensus 152 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~-~--~~~~~~~~~L~~ll~~~~-~~~~~~~l~~L~~l~~~ 227 (482)
.+.|++++|+.++ .+.+...++.|+|+|.+++....... + ....+++|.|+.+|.++. ...+..++++|.|++..
T Consensus 533 v~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~ 611 (810)
T 3now_A 533 VQEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM 611 (810)
T ss_dssp HHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS
T ss_pred HHCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC
Confidence 9999999999999 55667889999999999997642111 1 123578999999998653 34457899999999998
Q ss_pred CcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHh-cCchHHHHHHhcCCCchhHHHHHHHHH
Q 043116 228 TNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIIN-CGALRYLLGLLIHNHNKSIKKEVCWII 306 (482)
Q Consensus 228 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~~v~~~a~~~L 306 (482)
+++..+.+++.|+++.|+.++.++++.++..|+++|+|++.+.+. ...+.+ .|.++.|+.++.++ +..+|++|+|+|
T Consensus 612 ~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~-~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~AL 689 (810)
T 3now_A 612 NESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDV-IKMFEGNNDRVKFLALLCEDE-DEETATACAGAL 689 (810)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHH-HHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHH-HHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 888888899999999999999999999999999999999985554 444554 78999999999998 999999999999
Q ss_pred HHHhcCCHHHHHHHHH-cCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCC---CHH
Q 043116 307 SNITAGNREQIQAVID-AGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCP---DPQ 382 (482)
Q Consensus 307 ~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~---~~~ 382 (482)
+|++.+++...+.+++ .|+++.|++++.+++.+++..|+|+|.|++.. +++....+.+.|+++.|..+++.+ +++
T Consensus 690 anLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~ 768 (810)
T 3now_A 690 AIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAK 768 (810)
T ss_dssp HHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHH
T ss_pred HHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHH
Confidence 9999878888999998 89999999999999999999999999999984 678899999999999999999755 689
Q ss_pred HHHHHHHHHHHHHHhchhc
Q 043116 383 IVTVCLIGLENILKVGEAE 401 (482)
Q Consensus 383 v~~~~l~~L~~l~~~~~~~ 401 (482)
+++.++++|.++++.+.-.
T Consensus 769 i~e~Al~aL~~ll~~g~~~ 787 (810)
T 3now_A 769 AREVATQCLAAAERYRIIE 787 (810)
T ss_dssp HHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHhCCCcc
Confidence 9999999999999876553
No 9
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=4.4e-38 Score=301.22 Aligned_cols=374 Identities=18% Similarity=0.207 Sum_probs=297.0
Q ss_pred hchhhhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCC-----------hH
Q 043116 18 LSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDY-----------PQ 86 (482)
Q Consensus 18 ~~~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~-----------~~ 86 (482)
....+..+...++.|+..+.+.++.- ..+.|..+... .+.+..+++.|.+|.|+++|+..+. ++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~ll~~~~~--~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~ 97 (458)
T 3nmz_A 23 LTSHLGTKVEMVYSLLSMLGTHDKDD---MSRTLLAMSSS--QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKE 97 (458)
T ss_dssp ----------------------CCHH---HHHHHHHHHSS--TTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHH
T ss_pred cccccCchHHHHHHHHHHhcCCCHHH---HHHHHHHHHcC--CcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHH
Confidence 34456778888999999999888763 56677777665 4556889999999999999997542 69
Q ss_pred HHHHHHHHHHHHhCCChHhHHHHHhCCCh----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHhhC
Q 043116 87 LQFEAARALTNIASGTSENTKVAIDHGAV----------PIFVKLLASPS--DD-----VRE-------QAVWALGNVAG 142 (482)
Q Consensus 87 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i----------~~L~~ll~~~~--~~-----~~~-------~a~~~L~~l~~ 142 (482)
++..|+|+|.||+.+.++..+...+.+++ +.+++++.+.. .+ +++ +|+|+|+|++.
T Consensus 98 ~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~ 177 (458)
T 3nmz_A 98 ARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF 177 (458)
T ss_dssp HHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC
Confidence 99999999999999888888887787777 66677776542 12 444 89999999985
Q ss_pred CChhhHHHHHHhCChHHHHHHHcc----------hhhhhHHHHHHHHHHHhhcCCCCCChhh--hhhHHHHHHHHhccCC
Q 043116 143 DSSRCRDFVLSQGALIPLLAELNE----------HAKLSMLRTATWTLSNFCRGKPQPPFNQ--IRPALRVLAQLIRSND 210 (482)
Q Consensus 143 ~~~~~~~~~~~~~~i~~l~~~l~~----------~~~~~~~~~a~~~L~~L~~~~~~~~~~~--~~~~~~~L~~ll~~~~ 210 (482)
+ +++|+.+.+.|++++|+.++.. ..++.+++.|+|+|.||+...+.....+ ..|++|.|+.+|.+++
T Consensus 178 ~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~ 256 (458)
T 3nmz_A 178 D-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES 256 (458)
T ss_dssp S-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSC
T ss_pred C-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCC
Confidence 5 8899999999999999999942 2456789999999999998864333233 3577999999999999
Q ss_pred hhHHHHHHHHHHHhccC-CcHHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcCChhhHHHHH-hcCchHHHH
Q 043116 211 EKVLTDACRALAYLADG-TNDKIQAVIEAGVCPRLVKLL-GHRSRLVLTAALRTIGNIVTGDDFQTQCII-NCGALRYLL 287 (482)
Q Consensus 211 ~~~~~~~l~~L~~l~~~-~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~i~~L~ 287 (482)
++++..++++|++++.. ++.....+.+.|+++.|+.+| .++++.++..++.+|+||+.+++.....+. ..|+++.|+
T Consensus 257 ~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv 336 (458)
T 3nmz_A 257 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLV 336 (458)
T ss_dssp HHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHH
Confidence 99999999999999975 556777888999999999975 667889999999999999985555445555 789999999
Q ss_pred HHhcCCCch---hHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHH
Q 043116 288 GLLIHNHNK---SIKKEVCWIISNITA---GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIK 361 (482)
Q Consensus 288 ~ll~~~~~~---~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~ 361 (482)
.+|.+..+. .+++.|+|+|.|++. ++++..+.+.+.|+++.|+.+|.+++..+++.|+++|.|++.. ++++..
T Consensus 337 ~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~ 415 (458)
T 3nmz_A 337 GTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQE 415 (458)
T ss_dssp HHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHH
T ss_pred HHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHH
Confidence 999987332 499999999999997 7888899999999999999999999999999999999999964 788899
Q ss_pred HHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhc
Q 043116 362 HLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVG 398 (482)
Q Consensus 362 ~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~ 398 (482)
.+.+.|+++.|++++.++++++++.+.++|.+++...
T Consensus 416 ~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 416 ALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999653
No 10
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=5.1e-37 Score=307.48 Aligned_cols=402 Identities=17% Similarity=0.180 Sum_probs=343.5
Q ss_pred hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChH
Q 043116 25 KFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSE 104 (482)
Q Consensus 25 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~ 104 (482)
..|.+|.|+++++++++.++..|+++|.+++... ......+.+.|++|.|+.++.+++ ++++..++.+|.+++.++++
T Consensus 99 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~ 176 (529)
T 1jdh_A 99 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQE 176 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHH
Confidence 4589999999999999999999999999999875 455777779999999999999988 89999999999999998899
Q ss_pred hHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116 105 NTKVAIDHGAVPIFVKLLASP-SDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF 183 (482)
Q Consensus 105 ~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L 183 (482)
.+..+.+.|+++.|+.++++. +...+..+..+|.+++. .+..+..+.+.|+++.++.++ .+.+..++..++|+|.++
T Consensus 177 ~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l 254 (529)
T 1jdh_A 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNL 254 (529)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHH
Confidence 999999999999999999865 45677788999999995 456788888999999999999 556889999999999999
Q ss_pred hcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCC--CChhhHHHHHH
Q 043116 184 CRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH--RSRLVLTAALR 261 (482)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~ 261 (482)
+...+.. ....+++|.++.++.+++++++..++++|++++..+++....+.+.|+++.++.++.+ .++.++..+++
T Consensus 255 ~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~ 332 (529)
T 1jdh_A 255 SDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 332 (529)
T ss_dssp HTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHH
Confidence 9876432 2346899999999999999999999999999998887788889999999999999975 34789999999
Q ss_pred HHhHhhcCChh---hHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCh
Q 043116 262 TIGNIVTGDDF---QTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEF 338 (482)
Q Consensus 262 ~L~~l~~~~~~---~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 338 (482)
+|++++..++. ....+.+.|+++.|+.++.++.++.++..++|+|+|++.+.. ....+.+.|+++.|++++.++++
T Consensus 333 ~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~~~~~ 411 (529)
T 1jdh_A 333 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQ 411 (529)
T ss_dssp HHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHHHHhH
Confidence 99999986543 355788899999999999998446899999999999998544 45788899999999999998888
Q ss_pred hHHHHHHHHHHH----------------------hhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 043116 339 GTKKEAAWVISN----------------------ATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILK 396 (482)
Q Consensus 339 ~~~~~a~~aL~~----------------------l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~ 396 (482)
++++.++|++.| ++. +++....+.+.|+++.|+.++.+++++++..+.++|.++..
T Consensus 412 ~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~--~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~ 489 (529)
T 1jdh_A 412 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 489 (529)
T ss_dssp HHC-----------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc--CchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence 888766666555 544 45666778899999999999999999999999999999873
Q ss_pred hchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 043116 397 VGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETY 448 (482)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~ 448 (482)
. +.++..+.+.|+++.|.+++.+++++|++.|.+++.++
T Consensus 490 ~-------------~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 490 D-------------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp S-------------HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred C-------------HHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 2 22478889999999999999999999999999999875
No 11
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1.3e-37 Score=303.58 Aligned_cols=365 Identities=18% Similarity=0.198 Sum_probs=308.6
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 043116 71 VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDF 150 (482)
Q Consensus 71 ~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 150 (482)
.+|.++.+|++++ ++++..|+++|.+++.+++..+..+.+.|+++.|+++|+++++.++..|+|+|.|++.+++..+..
T Consensus 3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5899999999999 899999999999999878888889999999999999999999999999999999999887889999
Q ss_pred HHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc--------c--------CChhHH
Q 043116 151 VLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR--------S--------NDEKVL 214 (482)
Q Consensus 151 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~--------~--------~~~~~~ 214 (482)
+.+.|+++.|+.+|..+.+.++++.++|+|+||+... .....+..|++|.|+.++. + .++++.
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS-STHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCH-HhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 9999999999999954778899999999999999984 3333333499999999993 2 246677
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhhCC------CChhhHHHHHHHHhHhhcCC-----------------
Q 043116 215 TDACRALAYLADGTNDKIQAVIEA-GVCPRLVKLLGH------RSRLVLTAALRTIGNIVTGD----------------- 270 (482)
Q Consensus 215 ~~~l~~L~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~----------------- 270 (482)
..++++|+|++.. ++....+.+. |+++.|+.+|.+ .+..++..++.+|.+++...
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 7999999999987 6777788887 999999999975 45678888999999987311
Q ss_pred ---------------------------------hhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH--
Q 043116 271 ---------------------------------DFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNRE-- 315 (482)
Q Consensus 271 ---------------------------------~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~-- 315 (482)
+...+.+++.++++.++.+|.++.++.++..|+|+|+|++.++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 112234556678999999998876899999999999999985432
Q ss_pred -HH-HHHH-HcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCH------HHHHH
Q 043116 316 -QI-QAVI-DAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDP------QIVTV 386 (482)
Q Consensus 316 -~~-~~l~-~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~------~v~~~ 386 (482)
.. +..+ +.|++|.|++++.+++.++++.|+|+|.|++.+ ++ ...++..|+++.|++++..+++ ++...
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~~-~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~ 396 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PL-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS 396 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GG-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--HH-HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence 22 4445 689999999999999999999999999999884 33 3455667899999999998643 68889
Q ss_pred HHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCC-CHHHHHHHHHHHHHhcCCCC
Q 043116 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHD-NNDIHEMSVKILETYWCGRV 453 (482)
Q Consensus 387 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~~~~~~ 453 (482)
++.+|.+++...+ .....+.+.|+++.|.+|+.++ ++++++.|.++|.+||..++
T Consensus 397 ~l~~l~ni~~~~~------------~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 397 ACYTVRNLMASQP------------QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHTTCT------------HHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHhcCH------------HHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 9999999985432 2578888999999999999999 99999999999999998765
No 12
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=9.2e-36 Score=304.20 Aligned_cols=397 Identities=16% Similarity=0.180 Sum_probs=342.7
Q ss_pred hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChH
Q 043116 25 KFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSE 104 (482)
Q Consensus 25 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~ 104 (482)
..+.++.|+++++++++.++..|+++|.+++... ......+.+.|+++.|+.+|++++ ++++..++.+|.+++..+++
T Consensus 96 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~ 173 (644)
T 2z6h_A 96 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQE 173 (644)
T ss_dssp TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcH
Confidence 4589999999999999999999999999999875 556777789999999999999998 89999999999999988899
Q ss_pred hHHHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116 105 NTKVAIDHGAVPIFVKLLASPS-DDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF 183 (482)
Q Consensus 105 ~~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L 183 (482)
.+..+.+.|+++.|++++++.+ ..++..++.+|.+++. .+..+..+.+.|+++.++.++ .+.+..++..++|+|.++
T Consensus 174 ~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL 251 (644)
T 2z6h_A 174 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNL 251 (644)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998754 6788899999999995 456788899999999999999 556789999999999999
Q ss_pred hcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC--ChhhHHHHHH
Q 043116 184 CRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR--SRLVLTAALR 261 (482)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~ 261 (482)
+...+.. ....++++.|+.++.+.+++++..++++|.+++..++.....+.+.|+++.|+.++.+. .+.++..|++
T Consensus 252 ~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~ 329 (644)
T 2z6h_A 252 SDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 329 (644)
T ss_dssp GGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHH
Confidence 9876332 33468999999999999999999999999999988878888899999999999999763 3789999999
Q ss_pred HHhHhhcCCh---hhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC-
Q 043116 262 TIGNIVTGDD---FQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAE- 337 (482)
Q Consensus 262 ~L~~l~~~~~---~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~- 337 (482)
+|++++..++ .....+.+.|+++.|+++|.++.++.+++.++|+|+|++.+... .+.+.+.|+++.|++++.+.+
T Consensus 330 aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~-~~~i~~~~~i~~Lv~lL~~~~~ 408 (644)
T 2z6h_A 330 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQ 408 (644)
T ss_dssp HHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH-HHHHHHcCCHHHHHHHHhccch
Confidence 9999997544 23344778899999999999884578999999999999986444 478889999999999998643
Q ss_pred ---------------------hhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 043116 338 ---------------------FGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILK 396 (482)
Q Consensus 338 ---------------------~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~ 396 (482)
.+++..++.+|.+++. ++.....+.+.|+++.|++++.+++++++..+..+|.++..
T Consensus 409 ~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~ 486 (644)
T 2z6h_A 409 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 486 (644)
T ss_dssp HHTTC----------CCSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred hhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 4566677778888876 45677788899999999999999999999999999999874
Q ss_pred hchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHH
Q 043116 397 VGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVK 443 (482)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~ 443 (482)
. +..+..+.+.|+++.|.+++.++++++++.|.+
T Consensus 487 ~-------------~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~ 520 (644)
T 2z6h_A 487 D-------------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAA 520 (644)
T ss_dssp S-------------HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHH
T ss_pred C-------------HHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHH
Confidence 2 124788899999999999999999999654333
No 13
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=4.9e-37 Score=306.99 Aligned_cols=370 Identities=23% Similarity=0.320 Sum_probs=328.3
Q ss_pred hhccHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCCh
Q 043116 25 KFEILPTMVAGVWSD-DNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTS 103 (482)
Q Consensus 25 ~~~~i~~l~~~l~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~ 103 (482)
..+.+|.|+++++++ ++.++..|+++|.+++... .+....++..|+++.|+.+|.+++ ++++..|+++|++++.+++
T Consensus 128 ~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~ 205 (530)
T 1wa5_B 128 QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDST 205 (530)
T ss_dssp HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCH
T ss_pred HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCc
Confidence 468999999999987 8999999999999999875 456777889999999999999988 9999999999999999888
Q ss_pred HhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHH
Q 043116 104 ENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-SRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSN 182 (482)
Q Consensus 104 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 182 (482)
+.+..+...|+++.|+.++.+.++.++..|+|+|++++... +.. ......++++.|+.++ .+.++.++..++|+|.+
T Consensus 206 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~ 283 (530)
T 1wa5_B 206 DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP-DWSVVSQALPTLAKLI-YSMDTETLVDACWAISY 283 (530)
T ss_dssp HHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCC-CHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHH
T ss_pred cchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCC-cHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999765 332 3445678999999999 66788999999999999
Q ss_pred hhcCCCCC-ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHH
Q 043116 183 FCRGKPQP-PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALR 261 (482)
Q Consensus 183 L~~~~~~~-~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~ 261 (482)
++...+.. ......++++.|+.++.++++.++..++++|++++...+...+.+.+.|+++.++.+|.++++.++..|++
T Consensus 284 L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~ 363 (530)
T 1wa5_B 284 LSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 363 (530)
T ss_dssp HHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHH
Confidence 99875322 22223589999999999999999999999999999888888888889999999999999999999999999
Q ss_pred HHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCH--HHHHHHHHcCChHHHHHHHhcCCh
Q 043116 262 TIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA-GNR--EQIQAVIDAGLIGPIVNLLQDAEF 338 (482)
Q Consensus 262 ~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~--~~~~~l~~~~~i~~L~~ll~~~~~ 338 (482)
+|++++.+++.....+++.|+++.|+.++.++ ++.++..|+|+|+|++. +.+ +..+.+++.|+++.|+.++.++++
T Consensus 364 aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~ 442 (530)
T 1wa5_B 364 TISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADN 442 (530)
T ss_dssp HHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCH
T ss_pred HHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCH
Confidence 99999998888888888999999999999988 99999999999999998 455 778889999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCH----------HHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhch
Q 043116 339 GTKKEAAWVISNATSGGTH----------EQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGE 399 (482)
Q Consensus 339 ~~~~~a~~aL~~l~~~~~~----------~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~ 399 (482)
.++..++++|.+++..++. .....+.+.|+++.|..++.+++++++..+..+|.+++...+
T Consensus 443 ~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~ 513 (530)
T 1wa5_B 443 RIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEE 513 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 9999999999999874322 245667888999999999999999999999999999986543
No 14
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=6.3e-37 Score=309.15 Aligned_cols=416 Identities=16% Similarity=0.143 Sum_probs=340.5
Q ss_pred chhchhhhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHH
Q 043116 16 PALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARAL 95 (482)
Q Consensus 16 ~~~~~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L 95 (482)
.+....+....|.++.|+.++.++++.++..|++++.++++. ...++.+++.|+ +.|..++++++ +.++..|+.+|
T Consensus 279 ~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~--~~~R~~I~~~gv-~~L~~Ll~s~~-~~vr~~Al~~L 354 (810)
T 3now_A 279 LDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSK--KDKAKALCEQGV-DILKRLYHSKN-DGIRVRALVGL 354 (810)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS--HHHHHTTHHHHH-HHHHHHTTCSC-HHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--cHHHHHHHHcCc-HHHHHHHcCCC-HHHHHHHHHHH
Confidence 334444555679999999999999999999999999998776 567888888875 99999999888 89999999999
Q ss_pred HHHhCCCh-HhHHHHHhCCC----hHHHHHhhCCC--CHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchh
Q 043116 96 TNIASGTS-ENTKVAIDHGA----VPIFVKLLASP--SDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHA 168 (482)
Q Consensus 96 ~~l~~~~~-~~~~~~~~~g~----i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~ 168 (482)
++++.... +.....++.|. ++.|.++|.++ +++++..|+|+|.+++.+.+.......+.|+++.|+.++ .+.
T Consensus 355 ~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL-~s~ 433 (810)
T 3now_A 355 CKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLA-RGG 433 (810)
T ss_dssp HHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHH-HTT
T ss_pred HHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHh-CCC
Confidence 99975321 22222233343 56788888877 889999999999999966554444444679999999999 567
Q ss_pred hhhHHHHHHHHHHHhhcCCCCC---------------------------------ChhhhhhHHHHHHHHhccCChhHHH
Q 043116 169 KLSMLRTATWTLSNFCRGKPQP---------------------------------PFNQIRPALRVLAQLIRSNDEKVLT 215 (482)
Q Consensus 169 ~~~~~~~a~~~L~~L~~~~~~~---------------------------------~~~~~~~~~~~L~~ll~~~~~~~~~ 215 (482)
+..++..++|+|.||+.+.+.. ......|++|.|+.++.++++.++.
T Consensus 434 d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe 513 (810)
T 3now_A 434 NQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQE 513 (810)
T ss_dssp CGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHH
T ss_pred ChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHH
Confidence 8899999999999999854211 1112358999999999999999999
Q ss_pred HHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC-hhhHHH-HHhcCchHHHHHHhcCC
Q 043116 216 DACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGD-DFQTQC-IINCGALRYLLGLLIHN 293 (482)
Q Consensus 216 ~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~-l~~~~~i~~L~~ll~~~ 293 (482)
.++|+|+|++. +++....+++.|+++.|+.+|.++++..+..|+++|++++.+. +..... ....++++.|+.+|.++
T Consensus 514 ~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~ 592 (810)
T 3now_A 514 LIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQD 592 (810)
T ss_dssp HHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTT
T ss_pred HHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCC
Confidence 99999999995 5668888999999999999999999999999999999998753 322100 01136899999999866
Q ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHH-cCChHHH
Q 043116 294 HNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVR-EGCVKPL 372 (482)
Q Consensus 294 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~-~~~l~~L 372 (482)
.+...+.+|+|+|.|++.++++..+.+++.|+++.|+.++.++++.++..|+++|+|++. .++....+.+ .|.++.|
T Consensus 593 ~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~--~~~~~~~~v~~~g~l~~L 670 (810)
T 3now_A 593 CTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM--SEDVIKMFEGNNDRVKFL 670 (810)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT--SHHHHHHHHSSSSHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC--ChHHHHHHHhccCcHHHH
Confidence 344556799999999999888888899999999999999999999999999999999998 4556666665 6899999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHH-hchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043116 373 CDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEE-AEGLEKIENLQSHDNNDIHEMSVKILETYWCG 451 (482)
Q Consensus 373 ~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 451 (482)
+.++++++..++..+.++|.++....+.. .+.+.+ .|+++.|.++..+++.+++..|.+.+.++...
T Consensus 671 v~LL~s~d~~vq~~Aa~ALanLt~~s~~~------------~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 671 ALLCEDEDEETATACAGALAIITSVSVKC------------CEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHHHHHCHHH------------HHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhCCCHHH------------HHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999998642221 333445 89999999999999999999999999988764
No 15
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=3.2e-37 Score=308.41 Aligned_cols=371 Identities=24% Similarity=0.316 Sum_probs=329.0
Q ss_pred hhccHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCCh
Q 043116 25 KFEILPTMVAGVWSDD-NKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTS 103 (482)
Q Consensus 25 ~~~~i~~l~~~l~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~ 103 (482)
..+.+|.|++++++++ +.++..|+++|.+++... .+....++..|+++.|+.+|.+++ ++++..|+++|++++.+++
T Consensus 115 ~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~ 192 (528)
T 4b8j_A 115 QSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSP 192 (528)
T ss_dssp HTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCH
T ss_pred HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCCh
Confidence 4579999999999876 999999999999999875 566788889999999999999988 9999999999999999889
Q ss_pred HhHHHHHhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHH
Q 043116 104 ENTKVAIDHGAVPIFVKLL-ASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSN 182 (482)
Q Consensus 104 ~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 182 (482)
..+..+.+.|+++.|+.++ .+.++.++..++|+|++++...+.. ......++++.|+.++ .+.+..++..++|+|.+
T Consensus 193 ~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~ 270 (528)
T 4b8j_A 193 KCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLI-HSNDEEVLTDACWALSY 270 (528)
T ss_dssp HHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHH
Confidence 9999999999999999999 6788999999999999999765433 2334578999999999 67789999999999999
Q ss_pred hhcCCCCC-ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC-ChhhHHHHH
Q 043116 183 FCRGKPQP-PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR-SRLVLTAAL 260 (482)
Q Consensus 183 L~~~~~~~-~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~ 260 (482)
++...+.. ......++++.|+.++.++++.++..++++|++++...+...+.+.+.|+++.|+.+|.++ ++.++..|+
T Consensus 271 l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~ 350 (528)
T 4b8j_A 271 LSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEAC 350 (528)
T ss_dssp HTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHH
Confidence 99775322 2223468999999999999999999999999999998888888899999999999999998 899999999
Q ss_pred HHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChh
Q 043116 261 RTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAG-NREQIQAVIDAGLIGPIVNLLQDAEFG 339 (482)
Q Consensus 261 ~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~ 339 (482)
++|+|++.+++.....+++.|+++.|+.++.++ ++.++..|+|+|+|++.. +++....+++.|+++.|+.++.+++++
T Consensus 351 ~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~ 429 (528)
T 4b8j_A 351 WTISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIR 429 (528)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHH
T ss_pred HHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHH
Confidence 999999998888888899999999999999999 999999999999999984 788889999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCH----------HHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchh
Q 043116 340 TKKEAAWVISNATSGGTH----------EQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEA 400 (482)
Q Consensus 340 ~~~~a~~aL~~l~~~~~~----------~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~ 400 (482)
++..++++|.+++..+.. .....+.+.|+++.|..+.++++++++..+..++.+++...+.
T Consensus 430 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~~ 500 (528)
T 4b8j_A 430 IVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEED 500 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence 999999999999874322 2466778889999999999999999999999999999865433
No 16
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=7.2e-38 Score=305.28 Aligned_cols=363 Identities=17% Similarity=0.198 Sum_probs=303.5
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHH
Q 043116 28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTK 107 (482)
Q Consensus 28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 107 (482)
.+|.++++|+++++.+|..|+++|.+++..+ ......+.+.|++|.|+++|++++ ++++..|+++|.|++.++++++.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 5899999999999999999999999998764 444568889999999999999988 99999999999999998899999
Q ss_pred HHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcc--------h-------hhhh
Q 043116 108 VAIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNE--------H-------AKLS 171 (482)
Q Consensus 108 ~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--------~-------~~~~ 171 (482)
.+++.|+++.|+++|. ++++++++.|+|+|+|++.+ +..+..+.+ |+++.|+.++.. . .+..
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence 9999999999999999 88999999999999999977 667888888 999999999931 1 2467
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhh-h-hHHHHHHHHhcc------CChhHHHHHHHHHHHhccCC---------------
Q 043116 172 MLRTATWTLSNFCRGKPQPPFNQI-R-PALRVLAQLIRS------NDEKVLTDACRALAYLADGT--------------- 228 (482)
Q Consensus 172 ~~~~a~~~L~~L~~~~~~~~~~~~-~-~~~~~L~~ll~~------~~~~~~~~~l~~L~~l~~~~--------------- 228 (482)
+++.++|+|+||+.. +.....+. . |+++.|+.++.+ .+..++..++.+|.+++...
T Consensus 159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~ 237 (457)
T 1xm9_A 159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237 (457)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence 788999999999987 32222223 3 999999999985 46678888999999886310
Q ss_pred -----------------------------------cHHHHHHHHhCcHHHHHHhhCC-CChhhHHHHHHHHhHhhcCChh
Q 043116 229 -----------------------------------NDKIQAVIEAGVCPRLVKLLGH-RSRLVLTAALRTIGNIVTGDDF 272 (482)
Q Consensus 229 -----------------------------------~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~ 272 (482)
+...+.+++.++++.++.+|.+ .++.+++.|+|+|+|++.++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~ 317 (457)
T 1xm9_A 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317 (457)
T ss_dssp ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence 1122334556778889999865 4688999999999999986643
Q ss_pred h---H-HHH-HhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCh------hHH
Q 043116 273 Q---T-QCI-INCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEF------GTK 341 (482)
Q Consensus 273 ~---~-~~l-~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~------~~~ 341 (482)
. . +.+ .+.|+++.|+++|.++ +.+++++|+|+|.|++.+ + ..+.++..|+++.|+++|..+++ ++.
T Consensus 318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~-~-~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~ 394 (457)
T 1xm9_A 318 MSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH-P-LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDIL 394 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS-G-GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHH
T ss_pred chHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcC-H-HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHH
Confidence 2 1 333 4689999999999999 999999999999999874 3 34566677899999999997643 688
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCC-CHHHHHHHHHHHHHHHHhch
Q 043116 342 KEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCP-DPQIVTVCLIGLENILKVGE 399 (482)
Q Consensus 342 ~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~~l~~L~~l~~~~~ 399 (482)
..++++|.++... +++....+.+.|+++.|++++.++ ++++++.|.++|.+++...+
T Consensus 395 ~~~l~~l~ni~~~-~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 395 SSACYTVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 8999999999875 567888888999999999999999 99999999999999986543
No 17
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=4.2e-37 Score=301.71 Aligned_cols=366 Identities=23% Similarity=0.289 Sum_probs=323.4
Q ss_pred ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh
Q 043116 27 EILPTMVAGVWSD-DNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN 105 (482)
Q Consensus 27 ~~i~~l~~~l~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~ 105 (482)
+.+|.|++.++++ ++.++..|+++|.+++... .+....+++.|+++.|++++++++ ++++..|+++|++++.++++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~ 141 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC 141 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence 7899999999988 8999999999999999865 455677788999999999999998 999999999999999988899
Q ss_pred HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-hhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116 106 TKVAIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDS-SRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF 183 (482)
Q Consensus 106 ~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L 183 (482)
+..+.+.|+++.|+.++.+ .+..++..|+|+|++++... +..+.... .++++.++.++ .+.+..++..++|+|.++
T Consensus 142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l 219 (450)
T 2jdq_A 142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLL-FVSDTDVLADACWALSYL 219 (450)
T ss_dssp HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence 9999999999999999995 78999999999999999654 33222222 67899999999 667889999999999999
Q ss_pred hcCCCC-CChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHH
Q 043116 184 CRGKPQ-PPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRT 262 (482)
Q Consensus 184 ~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~ 262 (482)
+...+. .......+++|.++.++.++++.++..++++|++++...+...+.+.+.|+++.++.++.++++.++..|+++
T Consensus 220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~ 299 (450)
T 2jdq_A 220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 299 (450)
T ss_dssp TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence 986522 2222336899999999999999999999999999999888777778888999999999999999999999999
Q ss_pred HhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 043116 263 IGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAG-NREQIQAVIDAGLIGPIVNLLQDAEFGTK 341 (482)
Q Consensus 263 L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~~~ 341 (482)
|++++.+++...+.+++.|+++.++.++.++ ++.+|..|+|+|+|++.+ +++..+.+++.|+++.|++++.+++++++
T Consensus 300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 378 (450)
T 2jdq_A 300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV 378 (450)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence 9999998888888888899999999999998 999999999999999974 77888888999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCH----------HHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHh
Q 043116 342 KEAAWVISNATSGGTH----------EQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKV 397 (482)
Q Consensus 342 ~~a~~aL~~l~~~~~~----------~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~ 397 (482)
..++++|.+++..+.. .....+.+.|+++.|..++.+++++++..+..+|.+++..
T Consensus 379 ~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 444 (450)
T 2jdq_A 379 QVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGT 444 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 9999999999874322 2346677889999999999999999999999999999954
No 18
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.8e-36 Score=296.13 Aligned_cols=366 Identities=18% Similarity=0.191 Sum_probs=303.7
Q ss_pred hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCC-Ch
Q 043116 25 KFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASG-TS 103 (482)
Q Consensus 25 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~-~~ 103 (482)
..+.||.|+++|+++++.+|..|++.|.+++... .+....+++.|++|.|+++|++++ +++++.|+++|.|++.+ ++
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~ 123 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQ 123 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCH
Confidence 4557999999999999999999999999999865 667888899999999999999999 99999999999999985 69
Q ss_pred HhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHc-----------------
Q 043116 104 ENTKVAIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELN----------------- 165 (482)
Q Consensus 104 ~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~----------------- 165 (482)
+++..+.+.|+++.|+++|.+ .+.++++.++++|++++. .+..+..+.+ ++++.|+.++.
T Consensus 124 ~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~ 201 (584)
T 3l6x_A 124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPR 201 (584)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhccccccccccccccccc
Confidence 999999999999999999996 678999999999999996 4566777775 57999999872
Q ss_pred chhhhhHHHHHHHHHHHhhcCCCCCChhh--hhhHHHHHHHHhcc------CChhHHHHHHHHHHHhccCCcH-------
Q 043116 166 EHAKLSMLRTATWTLSNFCRGKPQPPFNQ--IRPALRVLAQLIRS------NDEKVLTDACRALAYLADGTND------- 230 (482)
Q Consensus 166 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~--~~~~~~~L~~ll~~------~~~~~~~~~l~~L~~l~~~~~~------- 230 (482)
...+..++.+++++|.||+...+.....+ ..|+++.|+.++++ .+...++.++++|.||+.....
T Consensus 202 ~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~ 281 (584)
T 3l6x_A 202 HIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAER 281 (584)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC
T ss_pred ccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhh
Confidence 12256899999999999998764322222 25788899999874 4678999999999999954210
Q ss_pred ------------------HHHHHHHhCcHHHHHHhhC-CCChhhHHHHHHHHhHhhcCChh----hHHHHHhcCchHHHH
Q 043116 231 ------------------KIQAVIEAGVCPRLVKLLG-HRSRLVLTAALRTIGNIVTGDDF----QTQCIINCGALRYLL 287 (482)
Q Consensus 231 ------------------~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~----~~~~l~~~~~i~~L~ 287 (482)
..+.+++.+.++.++.+|. +.++.+++.|+++|.||+.+... ....+.+.++++.|+
T Consensus 282 ~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv 361 (584)
T 3l6x_A 282 YQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA 361 (584)
T ss_dssp --------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHH
T ss_pred hhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHH
Confidence 1112233455778888995 46789999999999999986532 223445678999999
Q ss_pred HHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--------ChhHHHHHHHHHHHhhcCCCHHH
Q 043116 288 GLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDA--------EFGTKKEAAWVISNATSGGTHEQ 359 (482)
Q Consensus 288 ~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--------~~~~~~~a~~aL~~l~~~~~~~~ 359 (482)
.+|.++ +..+++.|+|+|+|++.+... +..+..|+++.|+++|.++ +.+++..|+++|.|++.. ++++
T Consensus 362 ~LL~s~-~~~v~~~A~~aL~nLs~~~~~--~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~ 437 (584)
T 3l6x_A 362 DLLTNE-HERVVKAASGALRNLAVDARN--KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEA 437 (584)
T ss_dssp HGGGCS-CHHHHHHHHHHHHHHHTTCSC--HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHH
T ss_pred HHHcCC-CHHHHHHHHHHHHHHhCChhH--HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHH
Confidence 999999 899999999999999985432 3455789999999999875 357889999999999875 7899
Q ss_pred HHHHHHcCChHHHHhcCCCC--CHHHHHHHHHHHHHHHHhc
Q 043116 360 IKHLVREGCVKPLCDLLPCP--DPQIVTVCLIGLENILKVG 398 (482)
Q Consensus 360 ~~~l~~~~~l~~L~~ll~~~--~~~v~~~~l~~L~~l~~~~ 398 (482)
.+.+.+.|+++.|++++.+. .+.+++.|..+|.++..+.
T Consensus 438 ~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~ 478 (584)
T 3l6x_A 438 AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK 478 (584)
T ss_dssp HHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred HHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence 99999999999999999976 7889999999999998643
No 19
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=1.6e-34 Score=299.20 Aligned_cols=407 Identities=16% Similarity=0.167 Sum_probs=348.9
Q ss_pred hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChH
Q 043116 25 KFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSE 104 (482)
Q Consensus 25 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~ 104 (482)
..++++.|+++++++++.++..|+++|.+++... ......+.+.|+++.|+.++.+++ ..++..++.+|.+++..+++
T Consensus 232 ~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e 309 (780)
T 2z6g_A 232 KSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQE 309 (780)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChH
Confidence 4589999999999999999999999999999875 455666778999999999999988 89999999999999988899
Q ss_pred hHHHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116 105 NTKVAIDHGAVPIFVKLLASPS-DDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF 183 (482)
Q Consensus 105 ~~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L 183 (482)
.+..+.+.|+++.|+.++++.+ ...+..+..+|.+++.. +..+..+.+.|+++.|+.++ .+.+..++..++|+|.++
T Consensus 310 ~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L 387 (780)
T 2z6g_A 310 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNL 387 (780)
T ss_dssp HHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHH
Confidence 9999999999999999999765 45667889999999954 55678888999999999999 556788999999999999
Q ss_pred hcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC-C-hhhHHHHHH
Q 043116 184 CRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR-S-RLVLTAALR 261 (482)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~-~~v~~~a~~ 261 (482)
+...+. .....++++.|+.++.+.+++++..++++|++++..+++....+.+.|+++.|+.+|.+. + +.++..|++
T Consensus 388 ~~~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~ 465 (780)
T 2z6g_A 388 SDAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 465 (780)
T ss_dssp HTTCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hccchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHH
Confidence 987633 223478999999999999999999999999999998888888899999999999999763 3 489999999
Q ss_pred HHhHhhcCChh---hHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC-
Q 043116 262 TIGNIVTGDDF---QTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAE- 337 (482)
Q Consensus 262 ~L~~l~~~~~~---~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~- 337 (482)
+|++|+..++. ....+.+.++++.|+.+|.++.++.+++.|+|+|+|++.+ +.....+.+.|+++.|++++.+++
T Consensus 466 aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~ 544 (780)
T 2z6g_A 466 ALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQ 544 (780)
T ss_dssp HHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-HHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHHhcch
Confidence 99999875543 2346778899999999999984459999999999999975 444577889999999999997643
Q ss_pred ---------------------hhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 043116 338 ---------------------FGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILK 396 (482)
Q Consensus 338 ---------------------~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~ 396 (482)
.+++..++.+|.+++. ++.....+.+.|+++.|++++.++++.++..+..+|.++..
T Consensus 545 ~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~ 622 (780)
T 2z6g_A 545 DTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 622 (780)
T ss_dssp HHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 3466678888888886 56777788899999999999999999999999999999974
Q ss_pred hchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 043116 397 VGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGRV 453 (482)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 453 (482)
. +.++..|.+.|+++.|.+++.+++++|+..|.+.+.++..+..
T Consensus 623 ~-------------~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 623 D-------------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp S-------------HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred C-------------HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 2 2248888999999999999999999998887777766665443
No 20
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.2e-36 Score=304.91 Aligned_cols=434 Identities=15% Similarity=0.166 Sum_probs=357.0
Q ss_pred hhhhccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCC
Q 043116 23 QSKFEILPTMVAGVWS-DDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASG 101 (482)
Q Consensus 23 ~~~~~~i~~l~~~l~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 101 (482)
....+.++.|++.+.+ +++.++..|+..|.+++.. .+....+.+.|++|.|++++++++ ++++..|+++|.+++.+
T Consensus 55 ~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~ 131 (529)
T 1jdh_A 55 MRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLH 131 (529)
T ss_dssp HTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHH
T ss_pred HhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcC
Confidence 3445789999999974 5899999999999999876 447888889999999999999999 99999999999999997
Q ss_pred ChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHH
Q 043116 102 TSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLS 181 (482)
Q Consensus 102 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~ 181 (482)
++..+..+.+.|+++.|++++.++++.++..+..+|.+++..++..+..+.+.|+++.++.++....+......++.+|.
T Consensus 132 ~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~ 211 (529)
T 1jdh_A 132 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 211 (529)
T ss_dssp CTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 77888888899999999999999999999999999999998888889999999999999999966666667778999999
Q ss_pred HhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHH
Q 043116 182 NFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALR 261 (482)
Q Consensus 182 ~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~ 261 (482)
+++............++++.++.++.+++++++..++++|.+++...+... ...++++.++.++.++++.++..+++
T Consensus 212 ~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~ 288 (529)
T 1jdh_A 212 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAG 288 (529)
T ss_dssp HHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHH
Confidence 999765433334447999999999999999999999999999997654221 12367899999999999999999999
Q ss_pred HHhHhhcCChhhHHHHHhcCchHHHHHHhcCC-CchhHHHHHHHHHHHHhcCCHH---HHHHHHHcCChHHHHHHHhcCC
Q 043116 262 TIGNIVTGDDFQTQCIINCGALRYLLGLLIHN-HNKSIKKEVCWIISNITAGNRE---QIQAVIDAGLIGPIVNLLQDAE 337 (482)
Q Consensus 262 ~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~ll~~~~ 337 (482)
+|++++..++.....+.+.|+++.|+.++.+. .++.++..|+++|+|++.++++ ....+.+.|+++.|++++.+++
T Consensus 289 ~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~ 368 (529)
T 1jdh_A 289 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS 368 (529)
T ss_dssp HHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTC
T ss_pred HHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhcccc
Confidence 99999998888888899999999999999863 2478999999999999875433 3557778999999999999876
Q ss_pred -hhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHH----------------------H
Q 043116 338 -FGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLEN----------------------I 394 (482)
Q Consensus 338 -~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~----------------------l 394 (482)
+.++..++++|.|++.. +.....+.+.|+++.|++++.+++++++..+.+++.+ +
T Consensus 369 ~~~v~~~a~~~l~nl~~~--~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L 446 (529)
T 1jdh_A 369 HWPLIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHIL 446 (529)
T ss_dssp CHHHHHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcC--hhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHH
Confidence 59999999999999974 3445788899999999999987777777655555544 3
Q ss_pred HHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC----------CCCCCCCCCccCC
Q 043116 395 LKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCG----------RVVGPQPGLTYAG 464 (482)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~----------~~~~~~~~~~~~~ 464 (482)
.... ..+..+.+.|+++.|.++..+++++++..|.+.+.++..+ ...+.+.++.+++
T Consensus 447 ~~~~-------------~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~ 513 (529)
T 1jdh_A 447 ARDV-------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSR 513 (529)
T ss_dssp TTSH-------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred hcCc-------------hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCC
Confidence 3211 1256678899999999999999999999999999887644 2334566677777
Q ss_pred CCCCcccCCcccc
Q 043116 465 NEGEDALGSNVIA 477 (482)
Q Consensus 465 ~~~~~~~~~~~~~ 477 (482)
++.++..|..+|.
T Consensus 514 ~~~v~~~a~~aL~ 526 (529)
T 1jdh_A 514 NEGVATYAAAVLF 526 (529)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 7777777666553
No 21
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=3.9e-35 Score=286.72 Aligned_cols=369 Identities=17% Similarity=0.214 Sum_probs=305.3
Q ss_pred HhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-Ch
Q 043116 67 IQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD-SS 145 (482)
Q Consensus 67 ~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~ 145 (482)
...+.++.|+.+|.+++ ++++..|+++|.+++..+++++..+.+.|+|+.|+.+|.++++.+++.|+|+|.||+.+ ++
T Consensus 45 ~~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~ 123 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQ 123 (584)
T ss_dssp CCCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCH
T ss_pred cccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCH
Confidence 35678999999999998 99999999999999988999999999999999999999999999999999999999975 68
Q ss_pred hhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc------------------
Q 043116 146 RCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR------------------ 207 (482)
Q Consensus 146 ~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~------------------ 207 (482)
..+..+.+.|+++.|+.+|....+.++++.++++|++|+... .....+..+++|.|+.++.
T Consensus 124 ~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHHHTHHHHHHHTHHHHHCCC----------C
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHhccHHHHHHHHhcccccccccccccccccc
Confidence 899999999999999999965567889999999999999864 3333344678999999762
Q ss_pred cCChhHHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhhCC------CChhhHHHHHHHHhHhhcCChhh-------
Q 043116 208 SNDEKVLTDACRALAYLADGTNDKIQAVIEA-GVCPRLVKLLGH------RSRLVLTAALRTIGNIVTGDDFQ------- 273 (482)
Q Consensus 208 ~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~~~------- 273 (482)
..+++++..+.++|.|++..+++..+.+.+. |+++.|+.++.+ .+...++.|+++|.||+......
T Consensus 203 ~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~ 282 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERY 282 (584)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-
T ss_pred cccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhh
Confidence 2357999999999999998887767777775 677899999864 46679999999999999752111
Q ss_pred ------------------HHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH---HHHHHHH-HcCChHHHHH
Q 043116 274 ------------------TQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNR---EQIQAVI-DAGLIGPIVN 331 (482)
Q Consensus 274 ------------------~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~---~~~~~l~-~~~~i~~L~~ 331 (482)
...+++.++++.++.++.+..++.+++.|+|+|.|++.+.. ...+..+ +.++++.|++
T Consensus 283 ~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~ 362 (584)
T 3l6x_A 283 QEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIAD 362 (584)
T ss_dssp -------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHH
T ss_pred hhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHH
Confidence 11223335577889999765589999999999999998642 2234344 5788999999
Q ss_pred HHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCC--------CHHHHHHHHHHHHHHHHhchhccc
Q 043116 332 LLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCP--------DPQIVTVCLIGLENILKVGEAEKN 403 (482)
Q Consensus 332 ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~--------~~~v~~~~l~~L~~l~~~~~~~~~ 403 (482)
+|.+++.+++..|+++|.||+.... ... ++..|+++.|+++|.++ ..+++..++.+|.+++...+.
T Consensus 363 LL~s~~~~v~~~A~~aL~nLs~~~~--~~~-~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~--- 436 (584)
T 3l6x_A 363 LLTNEHERVVKAASGALRNLAVDAR--NKE-LIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE--- 436 (584)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHTTCS--CHH-HHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH---
T ss_pred HHcCCCHHHHHHHHHHHHHHhCChh--HHH-HHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH---
Confidence 9999999999999999999998543 233 44789999999999876 357888999999999854333
Q ss_pred cCCCCcccHHHHHHHHhchHHHHHHhhcCC--CHHHHHHHHHHHHHhcCCC
Q 043116 404 TDNIGDVNQYAQLVEEAEGLEKIENLQSHD--NNDIHEMSVKILETYWCGR 452 (482)
Q Consensus 404 ~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~--~~~v~~~a~~~l~~~~~~~ 452 (482)
....+.+.|+++.|.++..+. ++.+++.|.+++..+|...
T Consensus 437 ---------~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~ 478 (584)
T 3l6x_A 437 ---------AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK 478 (584)
T ss_dssp ---------HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred ---------HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence 266778999999999999875 8999999999999988654
No 22
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=2.3e-35 Score=282.42 Aligned_cols=331 Identities=16% Similarity=0.167 Sum_probs=279.7
Q ss_pred hhhhhhccHHHHHHHhcCC------------CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCH----------HHHHHh
Q 043116 21 NLQSKFEILPTMVAGVWSD------------DNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVV----------PRFVEF 78 (482)
Q Consensus 21 ~~~~~~~~i~~l~~~l~s~------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~----------~~L~~l 78 (482)
...+..|.+|.|+++|+.. ++.++.+|+|+|.|++.+. ++......+.+++ +.++++
T Consensus 64 ~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 142 (458)
T 3nmz_A 64 ISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEW 142 (458)
T ss_dssp HHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 4567899999999999853 3799999999999999987 6677777777777 777777
Q ss_pred hcCCC-ChH-----HHH-------HHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHH
Q 043116 79 LMRED-YPQ-----LQF-------EAARALTNIASGTSENTKVAIDHGAVPIFVKLLAS-----------PSDDVREQAV 134 (482)
Q Consensus 79 l~~~~-~~~-----v~~-------~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-----------~~~~~~~~a~ 134 (482)
+.+.. ..+ +++ +|+|+|.|++. ++++|+.+.+.|++++|+.++.. .++.+++.|+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa 221 (458)
T 3nmz_A 143 QEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAG 221 (458)
T ss_dssp HTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred HHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHH
Confidence 77652 122 444 99999999977 69999999999999999999942 3477899999
Q ss_pred HHHHHhhCCChhhHHHHHH-hCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC-C-CCChhhhhhHHHHHHHHh-ccCC
Q 043116 135 WALGNVAGDSSRCRDFVLS-QGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK-P-QPPFNQIRPALRVLAQLI-RSND 210 (482)
Q Consensus 135 ~~L~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~-~-~~~~~~~~~~~~~L~~ll-~~~~ 210 (482)
|+|.|++.+++..+..+.. .|+++.|+.+| .+.+++++..++|+|.||+... + ........|++|.|+.+| .+.+
T Consensus 222 ~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~ 300 (458)
T 3nmz_A 222 MALTNLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKK 300 (458)
T ss_dssp HHHHHHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCS
T ss_pred HHHHHHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCC
Confidence 9999999888767766654 45699999999 6788899999999999999852 2 223333469999999975 5678
Q ss_pred hhHHHHHHHHHHHhccCCcHHHHHHH-HhCcHHHHHHhhCCCCh----hhHHHHHHHHhHhhc---CChhhHHHHHhcCc
Q 043116 211 EKVLTDACRALAYLADGTNDKIQAVI-EAGVCPRLVKLLGHRSR----LVLTAALRTIGNIVT---GDDFQTQCIINCGA 282 (482)
Q Consensus 211 ~~~~~~~l~~L~~l~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~----~v~~~a~~~L~~l~~---~~~~~~~~l~~~~~ 282 (482)
++++..++.+|+|++.+.++....+. ..|+++.|+.+|.++++ .++..|+++|.|++. .++.....+.+.|+
T Consensus 301 ~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~ 380 (458)
T 3nmz_A 301 ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC 380 (458)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHccc
Confidence 89999999999999985544445555 68999999999987654 489999999999996 67888888999999
Q ss_pred hHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCC
Q 043116 283 LRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGG 355 (482)
Q Consensus 283 i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~ 355 (482)
++.|+.+|.++ +..++++|+|+|+|++.++++..+.+++.|+++.|++++.++++.+++.|+++|.||+.+.
T Consensus 381 i~~Lv~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 381 LQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999998 8899999999999999888999999999999999999999999999999999999999863
No 23
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=302.63 Aligned_cols=433 Identities=16% Similarity=0.181 Sum_probs=362.4
Q ss_pred hhhccHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCC
Q 043116 24 SKFEILPTMVAGVWSD-DNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGT 102 (482)
Q Consensus 24 ~~~~~i~~l~~~l~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~ 102 (482)
...+.++.|++.|.++ ++.++..|+.+|.+++.. .+....+.+.|+++.|+++|++++ +.++..|+++|.+++...
T Consensus 53 ~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~ 129 (644)
T 2z6h_A 53 RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQ 129 (644)
T ss_dssp TCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHS
T ss_pred hccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCc
Confidence 3457899999999864 899999999999999876 347888889999999999999998 999999999999999877
Q ss_pred hHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHH
Q 043116 103 SENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSN 182 (482)
Q Consensus 103 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 182 (482)
+..+..+.+.|+++.|++++.++++.++..++.+|.+++...+..+..+.+.|+++.|+.++........+..++.+|.+
T Consensus 130 ~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~n 209 (644)
T 2z6h_A 130 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKV 209 (644)
T ss_dssp TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred chhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 78888888999999999999999999999999999999987888889999999999999999766667788889999999
Q ss_pred hhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHH
Q 043116 183 FCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRT 262 (482)
Q Consensus 183 L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~ 262 (482)
++............++++.++.++.+.++.++..++++|.+++...+.. ....++++.|+.++.++++.++..++++
T Consensus 210 Ls~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~a 286 (644)
T 2z6h_A 210 LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGI 286 (644)
T ss_dssp HTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9976544444445789999999999999999999999999999654321 1122678999999999999999999999
Q ss_pred HhHhhcCChhhHHHHHhcCchHHHHHHhcCCCc-hhHHHHHHHHHHHHhcCCH--HHHH-HHHHcCChHHHHHHHhcCC-
Q 043116 263 IGNIVTGDDFQTQCIINCGALRYLLGLLIHNHN-KSIKKEVCWIISNITAGNR--EQIQ-AVIDAGLIGPIVNLLQDAE- 337 (482)
Q Consensus 263 L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~-~~v~~~a~~~L~nl~~~~~--~~~~-~l~~~~~i~~L~~ll~~~~- 337 (482)
|++++..++.....+.+.|+++.|+.++.+..+ +.++..|+++|+|++...+ +..+ .+.+.|+++.|++++.+++
T Consensus 287 L~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~ 366 (644)
T 2z6h_A 287 LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH 366 (644)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCC
T ss_pred HHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCc
Confidence 999999888888889999999999999987423 7899999999999987433 2233 4678899999999999765
Q ss_pred hhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCC----------------------HHHHHHHHHHHHHHH
Q 043116 338 FGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPD----------------------PQIVTVCLIGLENIL 395 (482)
Q Consensus 338 ~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~----------------------~~v~~~~l~~L~~l~ 395 (482)
+.+++.++++|.|++.. +.....+.+.|+++.|++++.+++ .+++..++.+|.+++
T Consensus 367 ~~v~~~a~~~L~nLa~~--~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La 444 (644)
T 2z6h_A 367 WPLIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA 444 (644)
T ss_dssp HHHHHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHccC--HHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHh
Confidence 69999999999999984 334478889999999999987643 356677778888877
Q ss_pred HhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC----------CCCCCCCCccCCC
Q 043116 396 KVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGR----------VVGPQPGLTYAGN 465 (482)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~----------~~~~~~~~~~~~~ 465 (482)
.... .+..+.+.|+++.|.+++.+++++++..|...+.++..+. ..+.+.++.++++
T Consensus 445 ~~~~-------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~ 511 (644)
T 2z6h_A 445 RDVH-------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRN 511 (644)
T ss_dssp TSHH-------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSC
T ss_pred cCHH-------------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCC
Confidence 5431 2567788999999999999999999999999988876541 2245666777778
Q ss_pred CCCcccCCcccc
Q 043116 466 EGEDALGSNVIA 477 (482)
Q Consensus 466 ~~~~~~~~~~~~ 477 (482)
+.+|..|+.+|.
T Consensus 512 ~~vr~~A~~aL~ 523 (644)
T 2z6h_A 512 EGVATYAAAVLF 523 (644)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 877777766653
No 24
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=5.7e-35 Score=302.64 Aligned_cols=432 Identities=16% Similarity=0.184 Sum_probs=359.5
Q ss_pred hhccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCCh
Q 043116 25 KFEILPTMVAGVWS-DDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTS 103 (482)
Q Consensus 25 ~~~~i~~l~~~l~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~ 103 (482)
..+.++.|++.|++ +++.++..|+.+|.+++.. ......+.+.|+++.|+.+|++++ +.++..|+++|.+++...+
T Consensus 190 ~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~ 266 (780)
T 2z6g_A 190 SPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQE 266 (780)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHST
T ss_pred ccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCh
Confidence 44789999999984 4899999999999998876 445777888999999999999998 9999999999999999778
Q ss_pred HhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116 104 ENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF 183 (482)
Q Consensus 104 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L 183 (482)
+.+..+.+.|+++.|++++.+++..++..++.+|.+++..++..+..+.+.|+++.|+.++...........++.+|.+|
T Consensus 267 ~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~L 346 (780)
T 2z6g_A 267 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 346 (780)
T ss_dssp THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 88888889999999999999999999999999999999888888888899999999999996655566677899999999
Q ss_pred hcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHH
Q 043116 184 CRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTI 263 (482)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L 263 (482)
+............++++.|+.++.+.++.++..++++|.+++...... ....++++.|+.++.++++.++..|+++|
T Consensus 347 s~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL 423 (780)
T 2z6g_A 347 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGIL 423 (780)
T ss_dssp HTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred hcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 976433333345789999999999999999999999999999665421 11236789999999999999999999999
Q ss_pred hHhhcCChhhHHHHHhcCchHHHHHHhcCCCc-hhHHHHHHHHHHHHhcCCHH---HHHHHHHcCChHHHHHHHhcCCh-
Q 043116 264 GNIVTGDDFQTQCIINCGALRYLLGLLIHNHN-KSIKKEVCWIISNITAGNRE---QIQAVIDAGLIGPIVNLLQDAEF- 338 (482)
Q Consensus 264 ~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~-~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~ll~~~~~- 338 (482)
++|+..++.....+.+.|+++.|+.++.+..+ ..++..|+++|+|++..+++ ....+...++++.|++++.+++.
T Consensus 424 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~ 503 (780)
T 2z6g_A 424 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHW 503 (780)
T ss_dssp HHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCH
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChH
Confidence 99999888888889999999999999987423 48999999999999874333 23466788999999999998765
Q ss_pred hHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCC----------------------HHHHHHHHHHHHHHHH
Q 043116 339 GTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPD----------------------PQIVTVCLIGLENILK 396 (482)
Q Consensus 339 ~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~----------------------~~v~~~~l~~L~~l~~ 396 (482)
.++..++++|+|++. .+.....+.+.|+++.|++++.+++ ++++..++.+|.++..
T Consensus 504 ~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~ 581 (780)
T 2z6g_A 504 PLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR 581 (780)
T ss_dssp HHHHHHHHHHHHHHS--SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc
Confidence 999999999999997 4555678889999999999886543 3466677788888764
Q ss_pred hchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC----------CCCCCCCCccCCCC
Q 043116 397 VGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGR----------VVGPQPGLTYAGNE 466 (482)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~----------~~~~~~~~~~~~~~ 466 (482)
.. ..+..+.+.|+++.|.+++.++++.++..|...+.++..+. ..+.+..+..++++
T Consensus 582 ~~-------------~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~ 648 (780)
T 2z6g_A 582 DI-------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNE 648 (780)
T ss_dssp SH-------------HHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred Ch-------------hhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCH
Confidence 21 12567789999999999999999999999999988875431 23456667777777
Q ss_pred CCcccCCcccc
Q 043116 467 GEDALGSNVIA 477 (482)
Q Consensus 467 ~~~~~~~~~~~ 477 (482)
.+|..|+.+|.
T Consensus 649 ~Vr~~A~~aL~ 659 (780)
T 2z6g_A 649 GVATYAAAVLF 659 (780)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777666553
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=1.5e-30 Score=242.22 Aligned_cols=273 Identities=18% Similarity=0.168 Sum_probs=237.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC----------CChHHHHHHHHHHHHHhCCChHhHHHHH
Q 043116 41 NKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMRE----------DYPQLQFEAARALTNIASGTSENTKVAI 110 (482)
Q Consensus 41 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 110 (482)
...+..|+++|.+++.. .+.++.+++.|+++.|+.+|..+ .+++++..|+++|.|++.++++.+..+.
T Consensus 46 ~~~~~~A~~aL~nls~d--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~ 123 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123 (354)
T ss_dssp GGTHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34555899999999976 57899999999999999999521 1267999999999999997777887776
Q ss_pred hC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC-
Q 043116 111 DH-GAVPIFVKLLASPSDDVREQAVWALGNVAGD-SSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK- 187 (482)
Q Consensus 111 ~~-g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~- 187 (482)
.. |.++.|+.+|+++++++++.|+|+|.|++.. ++..+..+.+.|+++.|+.+|..+.+.++++.++++|++|+...
T Consensus 124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 54 5599999999999999999999999999975 56788999999999999998756677889999999999999844
Q ss_pred CCCChhh-hhhHHHHHHHHhccCCh----hHHHHHHHHHHHhcc---CCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHH
Q 043116 188 PQPPFNQ-IRPALRVLAQLIRSNDE----KVLTDACRALAYLAD---GTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAA 259 (482)
Q Consensus 188 ~~~~~~~-~~~~~~~L~~ll~~~~~----~~~~~~l~~L~~l~~---~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a 259 (482)
....... ..|++|.|+.++.++++ +++..++++|.+++. ..++..+.+.+.|+++.|+.+|.+++..++..|
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A 283 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNA 283 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHH
Confidence 2222223 47999999999987654 589999999999996 577788889999999999999999999999999
Q ss_pred HHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHH
Q 043116 260 LRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQ 316 (482)
Q Consensus 260 ~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~ 316 (482)
+++|+|++..+++....+.+.|+++.|+.+++++ +..+++.|+|+|.|++.+.+..
T Consensus 284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999987888888999999999999999999 9999999999999999876554
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=2.3e-29 Score=234.14 Aligned_cols=275 Identities=19% Similarity=0.204 Sum_probs=236.9
Q ss_pred CCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcc----------hhhhhHHHHHHHHHHHhhcCCCCCChh
Q 043116 124 SPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNE----------HAKLSMLRTATWTLSNFCRGKPQPPFN 193 (482)
Q Consensus 124 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~----------~~~~~~~~~a~~~L~~L~~~~~~~~~~ 193 (482)
.++......|+|+|+|++.+ +++|+.+.+.|++++|+.++.. ..++.+++.|+|+|.||+...+.....
T Consensus 43 ~~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~ 121 (354)
T 3nmw_A 43 APVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT 121 (354)
T ss_dssp CGGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred CcchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34445666899999999976 7899999999999999999942 234678999999999999876423333
Q ss_pred h--hhhHHHHHHHHhccCChhHHHHHHHHHHHhccC-CcHHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcC
Q 043116 194 Q--IRPALRVLAQLIRSNDEKVLTDACRALAYLADG-TNDKIQAVIEAGVCPRLVKLL-GHRSRLVLTAALRTIGNIVTG 269 (482)
Q Consensus 194 ~--~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~-~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~ 269 (482)
+ ..|++|.|+.+|.+++++++..++++|+|++.. +++....+.+.|+++.|+.+| +++++.++..|+.+|+||+..
T Consensus 122 i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 201 (354)
T 3nmw_A 122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 201 (354)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence 3 356799999999999999999999999999975 456777888999999999974 667889999999999999986
Q ss_pred ChhhHHHHH-hcCchHHHHHHhcCCCch---hHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCChhHHH
Q 043116 270 DDFQTQCII-NCGALRYLLGLLIHNHNK---SIKKEVCWIISNITA---GNREQIQAVIDAGLIGPIVNLLQDAEFGTKK 342 (482)
Q Consensus 270 ~~~~~~~l~-~~~~i~~L~~ll~~~~~~---~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~ 342 (482)
+++....+. ..|+++.|+.+|.++.+. .+++.|+|+|.|++. ++++.++.+.+.|+++.|+++|.+++..+++
T Consensus 202 ~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 281 (354)
T 3nmw_A 202 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS 281 (354)
T ss_dssp CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHH
T ss_pred ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHH
Confidence 655555565 789999999999887332 599999999999997 6888888999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchh
Q 043116 343 EAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEA 400 (482)
Q Consensus 343 ~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~ 400 (482)
.|+++|.|++.. ++++...+.+.|+++.|+++++++++++++.+.++|.+++...+.
T Consensus 282 ~A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 282 NACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999864 788899999999999999999999999999999999999976444
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.96 E-value=5.3e-27 Score=211.09 Aligned_cols=240 Identities=31% Similarity=0.448 Sum_probs=221.6
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 043116 70 GVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRD 149 (482)
Q Consensus 70 g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 149 (482)
|.++.|+++|++++ ++++..|+++|.+++..+++.+..+.+.|+++.|++++.++++.++..|+++|++++...+..+.
T Consensus 2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 56899999999999 99999999999999998888999999999999999999999999999999999999988888999
Q ss_pred HHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCC-CChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCC
Q 043116 150 FVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQ-PPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGT 228 (482)
Q Consensus 150 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~ 228 (482)
.+.+.|+++.++.++ .+.++.++..++++|.+++...+. .......++++.+++++.++++.++..++++|++++...
T Consensus 81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 567899999999999999975432 233334689999999999999999999999999999888
Q ss_pred cHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHH
Q 043116 229 NDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISN 308 (482)
Q Consensus 229 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~n 308 (482)
+...+.+.+.|+++.|+.++.++++.++..++++|++++..++.....+.+.|+++.|+.+++++ ++.++..|+|+|+|
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence 88878899999999999999999999999999999999998888888899999999999999998 99999999999999
Q ss_pred HhcC
Q 043116 309 ITAG 312 (482)
Q Consensus 309 l~~~ 312 (482)
++..
T Consensus 239 l~~~ 242 (252)
T 4hxt_A 239 IKSG 242 (252)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 9974
No 28
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=8.5e-27 Score=209.75 Aligned_cols=243 Identities=31% Similarity=0.406 Sum_probs=222.8
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh
Q 043116 26 FEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN 105 (482)
Q Consensus 26 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~ 105 (482)
++.+|.|++.++++++.++..|+++|.+++... .+....+++.|+++.|++++++++ ++++..|+++|++++.++++.
T Consensus 1 ~~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~ 78 (252)
T 4hxt_A 1 MNDVEKLVKLLTSTDSETQKEAARDLAEIASGP-ASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEA 78 (252)
T ss_dssp CCHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHH
T ss_pred CCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCChHH
Confidence 367999999999999999999999999999875 457888889999999999999999 999999999999999987999
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhc
Q 043116 106 TKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCR 185 (482)
Q Consensus 106 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~ 185 (482)
+..+.+.|+++.|+.++.++++.++..|+++|++++...+..+..+.+.|+++.++.++ .+.++.++..++++|.+++.
T Consensus 79 ~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 79 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIAS 157 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999988888889999999999999999 67778999999999999998
Q ss_pred CCCCC-ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHh
Q 043116 186 GKPQP-PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIG 264 (482)
Q Consensus 186 ~~~~~-~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 264 (482)
..+.. ......++++.++.++.++++.++..++++|.+++..++...+.+.+.|+++.++.++.++++.++..|+++|+
T Consensus 158 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 237 (252)
T 4hxt_A 158 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALE 237 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 75332 33344789999999999999999999999999999888888888999999999999999999999999999999
Q ss_pred HhhcCCh
Q 043116 265 NIVTGDD 271 (482)
Q Consensus 265 ~l~~~~~ 271 (482)
+++...+
T Consensus 238 ~l~~~~~ 244 (252)
T 4hxt_A 238 NIKSGGW 244 (252)
T ss_dssp HHHHTCB
T ss_pred HHHcCCC
Confidence 9997654
No 29
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=4.8e-27 Score=211.38 Aligned_cols=239 Identities=35% Similarity=0.520 Sum_probs=219.2
Q ss_pred CCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 043116 70 GVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRD 149 (482)
Q Consensus 70 g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 149 (482)
..++.++.+|.+++ ++++..|+++|.++...+++.+..+.+.|+++.|++++.++++.++..|+++|++++.+.+..+.
T Consensus 12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 46899999999999 89999999999887665778888999999999999999999999999999999999988888999
Q ss_pred HHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCC-ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCC
Q 043116 150 FVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQP-PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGT 228 (482)
Q Consensus 150 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~ 228 (482)
.+.+.|+++.++.++ .++++.++..++|+|.+++...+.. ......+++|.|+.++.++++.++..++++|++++...
T Consensus 91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 5678899999999999999886444 34445789999999999999999999999999999888
Q ss_pred cHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHH
Q 043116 229 NDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISN 308 (482)
Q Consensus 229 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~n 308 (482)
++....+.+.|+++.|+.++.++++.++..|+++|++++..++.....+.+.|+++.|+.++.++ ++.++..|+|+|+|
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999988888888899999999999999998 99999999999999
Q ss_pred Hhc
Q 043116 309 ITA 311 (482)
Q Consensus 309 l~~ 311 (482)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 874
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=1.4e-26 Score=208.35 Aligned_cols=241 Identities=35% Similarity=0.502 Sum_probs=217.2
Q ss_pred hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChH
Q 043116 25 KFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSE 104 (482)
Q Consensus 25 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~ 104 (482)
....++.+++.|+++++.++..|++.|.++++.. .+....+++.|+++.|+++|++++ ++++..|+++|++++.++++
T Consensus 10 ~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~ 87 (252)
T 4db8_A 10 HGSELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNE 87 (252)
T ss_dssp TTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHH
T ss_pred ccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHH
Confidence 3446899999999999999999999998877763 667888899999999999999999 99999999999999998999
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhh
Q 043116 105 NTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFC 184 (482)
Q Consensus 105 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~ 184 (482)
.+..+.+.|+++.|+.++.++++.++..|+++|++++...+.....+.+.|+++.++.++ .+.+..++..++|+|.+++
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~ 166 (252)
T 4db8_A 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIA 166 (252)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999977765548888999999999999 6678899999999999999
Q ss_pred cCCCCC-ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHH
Q 043116 185 RGKPQP-PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTI 263 (482)
Q Consensus 185 ~~~~~~-~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L 263 (482)
...+.. ......++++.|+.++.++++.++..++++|++++..++.....+.+.|+++.++.++.++++.++..|+++|
T Consensus 167 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L 246 (252)
T 4db8_A 167 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246 (252)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHH
T ss_pred cCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHH
Confidence 875322 2223378999999999999999999999999999988888888899999999999999999999999999999
Q ss_pred hHhhc
Q 043116 264 GNIVT 268 (482)
Q Consensus 264 ~~l~~ 268 (482)
++++.
T Consensus 247 ~~l~~ 251 (252)
T 4db8_A 247 EKLQS 251 (252)
T ss_dssp HTTC-
T ss_pred HHHhc
Confidence 99975
No 31
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.94 E-value=7.2e-25 Score=198.46 Aligned_cols=235 Identities=17% Similarity=0.170 Sum_probs=198.6
Q ss_pred hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHH-hhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHH
Q 043116 211 EKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVK-LLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGL 289 (482)
Q Consensus 211 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~l 289 (482)
.+-+..++..|.+++...+ ....+.+.|+++.++. +|.++++.++..|+++|++++.+++.....+++.|+++.|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 3567888999999997544 5666888999999999 9999999999999999999999899888999999999999999
Q ss_pred hcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCCh
Q 043116 290 LIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCV 369 (482)
Q Consensus 290 l~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l 369 (482)
|+++.+..+++.|+|+|+|++.+++...+.+.+.|+++.|+.++.++++.++..|+|+|.+++.. +++.+..+.+.|++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i 211 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV 211 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCH
Confidence 99644788999999999999998888888899999999999999999999999999999999985 67788899999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCC-CHHHHHHHHHHHHHh
Q 043116 370 KPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHD-NNDIHEMSVKILETY 448 (482)
Q Consensus 370 ~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~ 448 (482)
+.|+.++.+++++++..++.+|.+++...+.....+. ...+.+...+++ .+..++.++ +.++++++..++++|
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~-~~~~~l~~lL~~-----~~~~lq~~e~~~e~~~~~~~il~~~ 285 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR-EPELGLEELLRH-----RCQLLQQHEEYQEELEFCEKLLQTC 285 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH-CGGGCHHHHHHH-----HHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHh-ccHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987443221100 011235555543 366677565 799999999999999
Q ss_pred cCCCC
Q 043116 449 WCGRV 453 (482)
Q Consensus 449 ~~~~~ 453 (482)
|.+++
T Consensus 286 f~~~~ 290 (296)
T 1xqr_A 286 FSSPA 290 (296)
T ss_dssp CC---
T ss_pred cCCCC
Confidence 97643
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.1e-24 Score=213.72 Aligned_cols=321 Identities=12% Similarity=0.103 Sum_probs=258.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH-hcCCHHHHHHhhcC-CCChHHHHHHHHHHHHHhCCChH-
Q 043116 28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVI-QSGVVPRFVEFLMR-EDYPQLQFEAARALTNIASGTSE- 104 (482)
Q Consensus 28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~g~~~~L~~ll~~-~~~~~v~~~a~~~L~~l~~~~~~- 104 (482)
..+.+.+.+.+++...+..|++.|..++.. .+..+.+. +.|+++.|+.++++ .+ ..+...++.+|.|++...+.
T Consensus 335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl~--~~VKe~L~~d~~~L~~Lv~llk~~~d-~s~~Ygal~IL~NLt~~~~~~ 411 (778)
T 3opb_A 335 LSEIFINAISRRIVPKVEMSVEALAYLSLK--ASVKIMIRSNESFTEILLTMIKSQKM-THCLYGLLVIMANLSTLPEEX 411 (778)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHTTS--SHHHHHHHHCHHHHHHHHHHHTTTCC-TTHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhCC--HHHHHHHHhCHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCCccc
Confidence 567788888877766689999999999876 34445555 56779999999996 55 78999999999999974331
Q ss_pred -------------------------------------hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh
Q 043116 105 -------------------------------------NTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC 147 (482)
Q Consensus 105 -------------------------------------~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 147 (482)
.+..+.+.|+++.|+.++.++++.+++.|+|+|.+++.+ +..
T Consensus 412 ~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~ 490 (778)
T 3opb_A 412 XXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNF 490 (778)
T ss_dssp CCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGG
T ss_pred chhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHH
Confidence 456778999999999999999999999999999999955 778
Q ss_pred HHHHHHhCChHHHHHHHcchhhh--hHHHHHHHHHHHhhcCCC-CCCh--hhhhhHHHHHHHHhcc-CCh----------
Q 043116 148 RDFVLSQGALIPLLAELNEHAKL--SMLRTATWTLSNFCRGKP-QPPF--NQIRPALRVLAQLIRS-NDE---------- 211 (482)
Q Consensus 148 ~~~~~~~~~i~~l~~~l~~~~~~--~~~~~a~~~L~~L~~~~~-~~~~--~~~~~~~~~L~~ll~~-~~~---------- 211 (482)
|..+++.|+++.|+.++....+. ..+..|+++|.+++.... ...+ ....+++|.|+.+|.. +..
T Consensus 491 R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~ 570 (778)
T 3opb_A 491 IPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQ 570 (778)
T ss_dssp HHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCC
T ss_pred HHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccccc
Confidence 99999999999999999655443 278899999999996542 1111 0113899999999982 221
Q ss_pred ---hHHHHHHHHHHHhccCCc----HHHHHHHHh-CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhc---
Q 043116 212 ---KVLTDACRALAYLADGTN----DKIQAVIEA-GVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINC--- 280 (482)
Q Consensus 212 ---~~~~~~l~~L~~l~~~~~----~~~~~~~~~-~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~--- 280 (482)
--+..++.+|.|++..++ +....++.. |+++.+..+|.++++.++..|+++++||+.+.....+.+.+.
T Consensus 571 ~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~ 650 (778)
T 3opb_A 571 IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENP 650 (778)
T ss_dssp CCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSH
T ss_pred ccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCc
Confidence 127789999999998763 334557774 899999999999999999999999999998444322234322
Q ss_pred ---CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHc-CChHHHHHHHhc--CChhHHHHHHHHHHHhhc
Q 043116 281 ---GALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDA-GLIGPIVNLLQD--AEFGTKKEAAWVISNATS 353 (482)
Q Consensus 281 ---~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~i~~L~~ll~~--~~~~~~~~a~~aL~~l~~ 353 (482)
+.++.|+.++..+ +.++|..|+|+|+|++..++...+.+++. ++++.++.++.+ ++++++..++.++.|++.
T Consensus 651 ~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 651 QSLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred hhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 2478899999888 99999999999999987778878888875 799999999998 899999999999999996
No 33
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.6e-23 Score=204.26 Aligned_cols=408 Identities=14% Similarity=0.124 Sum_probs=301.6
Q ss_pred hhchhhhhhhccHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHH
Q 043116 17 ALSLNLQSKFEILPTMVAGVWSD-DNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARAL 95 (482)
Q Consensus 17 ~~~~~~~~~~~~i~~l~~~l~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L 95 (482)
+....+-...+..+.+.+.+.+. +..+...+++.|... +.+ +..+..+..+.++.|.+.+++ .+++..|+-+|
T Consensus 245 ~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaA-Ci~--~~cR~~I~~~~~~~L~~~l~~---~~ir~lAavvL 318 (778)
T 3opb_A 245 TLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSA-CID--ETMRTYITENYLQLLERSLNV---EDVQIYSALVL 318 (778)
T ss_dssp HHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHH-CCS--HHHHHHHHHHHHHHHHHHTTS---GGGHHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHH-hCC--cHHHHHHHHhHHHHHHHHhcc---HHHHHHHHHHH
Confidence 33344444555677777777544 445555555555544 443 334566677888999999965 47899999999
Q ss_pred HHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHH-hCChHHHHHHHcchhhhhHHH
Q 043116 96 TNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLS-QGALIPLLAELNEHAKLSMLR 174 (482)
Q Consensus 96 ~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~~~~~ 174 (482)
+.+..........+. ...+.+.+.+..++..-+..|++.|..++.+. ..++.+.+ .+++..|+.++....+..+..
T Consensus 319 ~KL~~~~~~~~~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~-~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Y 395 (778)
T 3opb_A 319 VKTWSFTKLTCINLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLKA-SVKIMIRSNESFTEILLTMIKSQKMTHCLY 395 (778)
T ss_dssp HHHTGGGTCTTCCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSS-HHHHHHHHCHHHHHHHHHHHTTTCCTTHHH
T ss_pred HHHhcCCCCCcCcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCH-HHHHHHHhCHHHHHHHHHHHhCCCCchHHH
Confidence 998763321111111 24577788888777666999999999999654 45555544 466999999996557788899
Q ss_pred HHHHHHHHhhcCCCCCCh---------------------------------------hhhhhHHHHHHHHhccCChhHHH
Q 043116 175 TATWTLSNFCRGKPQPPF---------------------------------------NQIRPALRVLAQLIRSNDEKVLT 215 (482)
Q Consensus 175 ~a~~~L~~L~~~~~~~~~---------------------------------------~~~~~~~~~L~~ll~~~~~~~~~ 215 (482)
.++.+|.|++...+.... ....|++|.|+.++.++++.++.
T Consensus 396 gal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re 475 (778)
T 3opb_A 396 GLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQ 475 (778)
T ss_dssp HHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHH
T ss_pred HHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHH
Confidence 999999999996542100 01268999999999999999999
Q ss_pred HHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChh---hHHHHHHHHhHhhcCChhhHHHHHh----cCchHHHHH
Q 043116 216 DACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRL---VLTAALRTIGNIVTGDDFQTQCIIN----CGALRYLLG 288 (482)
Q Consensus 216 ~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~---v~~~a~~~L~~l~~~~~~~~~~l~~----~~~i~~L~~ 288 (482)
.++++|.+++.. ++....+++.|+++.|+.++.+.... .+..|+++|.++....+... ++. .|++++|+.
T Consensus 476 ~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~ 552 (778)
T 3opb_A 476 QVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFE 552 (778)
T ss_dssp HHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHH
T ss_pred HHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHH
Confidence 999999999965 56777899999999999999887544 89999999999995443221 121 389999999
Q ss_pred HhcC-CCch------------hHHHHHHHHHHHHhcCC----HHHHHHHHHc-CChHHHHHHHhcCChhHHHHHHHHHHH
Q 043116 289 LLIH-NHNK------------SIKKEVCWIISNITAGN----REQIQAVIDA-GLIGPIVNLLQDAEFGTKKEAAWVISN 350 (482)
Q Consensus 289 ll~~-~~~~------------~v~~~a~~~L~nl~~~~----~~~~~~l~~~-~~i~~L~~ll~~~~~~~~~~a~~aL~~ 350 (482)
+|.. +... --+.+|+.+|.|++..+ .+..+.++.. |+++.|.+++.+++..+++.|+++++|
T Consensus 553 LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~N 632 (778)
T 3opb_A 553 LLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISN 632 (778)
T ss_dssp TSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred HcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9983 2111 12779999999999864 2446778884 999999999999999999999999999
Q ss_pred hhcCCCHHHH-HHHHHc------CChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHH-HHHhch
Q 043116 351 ATSGGTHEQI-KHLVRE------GCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQL-VEEAEG 422 (482)
Q Consensus 351 l~~~~~~~~~-~~l~~~------~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 422 (482)
++. +++.+ ..+.+. +.++.|+.+++.++.+++..|.++|.++....+. .+.. +...++
T Consensus 633 L~~--~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~------------ia~~ll~~~~g 698 (778)
T 3opb_A 633 MMS--HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPL------------IAKELLTKKEL 698 (778)
T ss_dssp HHT--SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHH------------HHHHHTTCHHH
T ss_pred HhC--CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChH------------HHHHHHHcccc
Confidence 997 34432 222221 2378899999999999999999999999643332 2344 444489
Q ss_pred HHHHHHhhcC--CCHHHHHHHHHHHHHhcC
Q 043116 423 LEKIENLQSH--DNNDIHEMSVKILETYWC 450 (482)
Q Consensus 423 ~~~l~~l~~~--~~~~v~~~a~~~l~~~~~ 450 (482)
++.+.++..+ ++++++.++..++.+++.
T Consensus 699 i~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 699 IENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 9999999877 899999999999999996
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.92 E-value=4.1e-23 Score=180.09 Aligned_cols=198 Identities=37% Similarity=0.540 Sum_probs=185.7
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHH
Q 043116 196 RPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQ 275 (482)
Q Consensus 196 ~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 275 (482)
.+..+.+..++++++++++..++++|.+++..+++....+.+.|+++.++.+|.++++.++..|+++|++++.+++....
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 57788999999999999999999999999988888888899999999999999999999999999999999988888888
Q ss_pred HHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCC
Q 043116 276 CIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGG 355 (482)
Q Consensus 276 ~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~ 355 (482)
.+.+.|+++.|+.+++++ ++.++..|+|+|+|++.++++..+.+++.|+++.|++++.++++.++..|+++|.+++..
T Consensus 91 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~- 168 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG- 168 (210)
T ss_dssp HHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-
T ss_pred HHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-
Confidence 899999999999999999 999999999999999998888888899999999999999999999999999999999985
Q ss_pred CHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 043116 356 THEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENIL 395 (482)
Q Consensus 356 ~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~ 395 (482)
+++....+.+.|+++.|.+++.+++++++..+.++|.++.
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 5778888899999999999999999999999999999885
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.91 E-value=9.5e-23 Score=177.79 Aligned_cols=199 Identities=33% Similarity=0.489 Sum_probs=181.0
Q ss_pred hcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh
Q 043116 68 QSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC 147 (482)
Q Consensus 68 ~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 147 (482)
..+..+.|..++++++ ++++..|+++|.+++.++++.+..+.+.|+++.|+++|.++++.++..|+++|++++.+.+..
T Consensus 10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 4678999999999999 999999999999999889999999999999999999999999999999999999999888888
Q ss_pred HHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCC-ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 043116 148 RDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQP-PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLAD 226 (482)
Q Consensus 148 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~ 226 (482)
+..+.+.|+++.++.++ .+.++.++..++|+|.+++...+.. ......++++.|+.++.++++.++..++++|.+++.
T Consensus 89 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 89 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 89999999999999999 6678999999999999999865332 223347899999999999999999999999999999
Q ss_pred CCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 043116 227 GTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVT 268 (482)
Q Consensus 227 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 268 (482)
.+++....+.+.|+++.|+.++.++++.++..|+++|.+++.
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 878888889999999999999999999999999999999975
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.89 E-value=1.9e-21 Score=176.05 Aligned_cols=225 Identities=17% Similarity=0.144 Sum_probs=185.1
Q ss_pred hHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHH
Q 043116 85 PQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAE 163 (482)
Q Consensus 85 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~ 163 (482)
.+-+..|+..|.+++. +.++...+.+.|+++.|+. +|.++++.++..|+|+|++++.+++.+++.+++.|++++|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 4678899999999998 6778888999999999999 9999999999999999999999999999999999999999999
Q ss_pred HcchhhhhHHHHHHHHHHHhhcCCCCC-ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHH
Q 043116 164 LNEHAKLSMLRTATWTLSNFCRGKPQP-PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCP 242 (482)
Q Consensus 164 l~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~ 242 (482)
+..+++..+++.|+|+|++++++.+.. ......+++|.|+.+++++++.++..++++|++++..+++..+.+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 955557889999999999999876432 2333468999999999999999999999999999988888889999999999
Q ss_pred HHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhc--C---chHHHHHHhcCCC-chhHHHHHHHHHHHHh
Q 043116 243 RLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINC--G---ALRYLLGLLIHNH-NKSIKKEVCWIISNIT 310 (482)
Q Consensus 243 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~--~---~i~~L~~ll~~~~-~~~v~~~a~~~L~nl~ 310 (482)
.|+.+|.++++.++..++++|++++...+......... . .++.-++-+++.+ ..++...+..++-++.
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999998755443322211 1 1222234444332 3455566666666654
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.86 E-value=6.2e-21 Score=164.92 Aligned_cols=197 Identities=18% Similarity=0.131 Sum_probs=170.8
Q ss_pred CHHHHHHhhcCCCCh--HHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 043116 71 VVPRFVEFLMREDYP--QLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCR 148 (482)
Q Consensus 71 ~~~~L~~ll~~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 148 (482)
.+|.++++|++++ + +++..|++++.+++..+++.+..+.+.|++|.|+++|.++++++++.|+|+|.||+.+++..+
T Consensus 9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 5899999999988 6 899999999999998889999999999999999999999999999999999999998888899
Q ss_pred HHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc----------------cCChh
Q 043116 149 DFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR----------------SNDEK 212 (482)
Q Consensus 149 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~----------------~~~~~ 212 (482)
..+.+.|+++.|+.+|..+.+.++++.++.+|++|+..... ...+..+.+|.|+.++. ..+++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~-k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL-KNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGG-HHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhh-HHHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999995556889999999999999987533 33344677888887652 13678
Q ss_pred HHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhhCC------CChhhHHHHHHHHhHhhcC
Q 043116 213 VLTDACRALAYLADGTNDKIQAVIEA-GVCPRLVKLLGH------RSRLVLTAALRTIGNIVTG 269 (482)
Q Consensus 213 ~~~~~l~~L~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~------~~~~v~~~a~~~L~~l~~~ 269 (482)
++..+..+|+|++..+++..+.+.+. |+++.|+.+++. .+...++.|+.+|.||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999998877777778776 778999999864 2567899999999999864
No 38
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=163.14 Aligned_cols=196 Identities=16% Similarity=0.193 Sum_probs=165.7
Q ss_pred cHHHHHHHhcCCCH--HHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh
Q 043116 28 ILPTMVAGVWSDDN--KVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN 105 (482)
Q Consensus 28 ~i~~l~~~l~s~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~ 105 (482)
.+|.++++|+++++ .++..|++.|.+++..+ .+....+++.|++|.|+++|++++ +++++.|+++|.|++.+++++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence 68999999999887 89999999999999765 566788889999999999999988 999999999999999988999
Q ss_pred HHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcc---------------hhh
Q 043116 106 TKVAIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNE---------------HAK 169 (482)
Q Consensus 106 ~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~---------------~~~ 169 (482)
+..+.+.|+++.|+++|. +++.++++.|+.+|+|++.. +..+..+.+. ++++|+.++.. ..+
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccch
Confidence 999999999999999998 57999999999999999965 4456666664 68888876521 125
Q ss_pred hhHHHHHHHHHHHhhcCCCCCChhh--hhhHHHHHHHHhcc------CChhHHHHHHHHHHHhccC
Q 043116 170 LSMLRTATWTLSNFCRGKPQPPFNQ--IRPALRVLAQLIRS------NDEKVLTDACRALAYLADG 227 (482)
Q Consensus 170 ~~~~~~a~~~L~~L~~~~~~~~~~~--~~~~~~~L~~ll~~------~~~~~~~~~l~~L~~l~~~ 227 (482)
.+++.+++++|.||+..++.....+ ..|+++.|+.+++. .+...++.+..+|.||+..
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 6899999999999998653323322 35889999999884 2568899999999999854
No 39
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.80 E-value=1.2e-17 Score=169.13 Aligned_cols=382 Identities=11% Similarity=0.080 Sum_probs=283.3
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHH
Q 043116 28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTK 107 (482)
Q Consensus 28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 107 (482)
.+|.+.+.++.+++.++..|+..|..++...+. ......++|.+..++++++ +.+|..|+.+|+.++...+..
T Consensus 165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~-- 237 (588)
T 1b3u_A 165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL----DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE-- 237 (588)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH----HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH--
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH----HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH--
Confidence 466677777888899999999999999876421 1234567888999998888 899999999999887633221
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC
Q 043116 108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK 187 (482)
Q Consensus 108 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~ 187 (482)
.....+++.+..++.+++..+|..++.+|+.++..... + .....+++.++.++ .++++.++..+++++..++...
T Consensus 238 -~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~ 312 (588)
T 1b3u_A 238 -DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--E-ITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENL 312 (588)
T ss_dssp -HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--H-HHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTS
T ss_pred -HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--c-cchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHh
Confidence 12234778888899999999999999999999742111 1 12334678888888 6778889999999999999865
Q ss_pred CCCCh--hhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 043116 188 PQPPF--NQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGN 265 (482)
Q Consensus 188 ~~~~~--~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 265 (482)
+.... .....++|.+..++.++++.++..++++|..++..-... .....+++.+..+++++++.+|..++.+++.
T Consensus 313 ~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~ 389 (588)
T 1b3u_A 313 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLDC 389 (588)
T ss_dssp CTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHH
T ss_pred ChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 33211 345678899999999999999999999999988432211 1223577888999999999999999999988
Q ss_pred hhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHHH
Q 043116 266 IVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAG-NREQIQAVIDAGLIGPIVNLLQDAEFGTKKEA 344 (482)
Q Consensus 266 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a 344 (482)
+....... .....+++.+..++.+. +..+|..++.++..++.. .++ .....+++.++..+.+.+..+|..|
T Consensus 390 l~~~~~~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a 461 (588)
T 1b3u_A 390 VNEVIGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAA 461 (588)
T ss_dssp HHHHSCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHH
T ss_pred HHHhcCHH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 87633221 11235778888888887 899999999999998751 111 1112367888888888999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHH
Q 043116 345 AWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLE 424 (482)
Q Consensus 345 ~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 424 (482)
+.+++.++....++. ....+++.|..++.++++.++..++.++..+....... .+ ....++
T Consensus 462 ~~~l~~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----------~~-----~~~~~~ 522 (588)
T 1b3u_A 462 TSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----------IT-----TKHMLP 522 (588)
T ss_dssp HHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----------HH-----HHHTHH
T ss_pred HHHHHHHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH----------HH-----HHHHHH
Confidence 999999976433322 12357888988899999999999999999988643221 01 234567
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043116 425 KIENLQSHDNNDIHEMSVKILETYWCG 451 (482)
Q Consensus 425 ~l~~l~~~~~~~v~~~a~~~l~~~~~~ 451 (482)
.|..+..+++++|+..+.+.+..++..
T Consensus 523 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 523 TVLRMAGDPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHhhCCCCCchHHHHHHHHHHHHHHH
Confidence 777888888889988888888887753
No 40
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.80 E-value=7.6e-18 Score=170.53 Aligned_cols=382 Identities=13% Similarity=0.147 Sum_probs=284.5
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH
Q 043116 27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT 106 (482)
Q Consensus 27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 106 (482)
..+|.+..+++.+++.++..|+.+|..++...+. ......++|.+..++++++ ..+|..++.+|+.++.....
T Consensus 203 ~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~-- 275 (588)
T 1b3u_A 203 EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP-- 275 (588)
T ss_dssp THHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH--
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc--
Confidence 3578888888888999999999999998876421 1233458899999998888 89999999999999762111
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhc
Q 043116 107 KVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSS-RCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCR 185 (482)
Q Consensus 107 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~ 185 (482)
......+++.+..++.++++.+|..|.++|+.++...+ ..+.......+++.+..++ ++.+..++..++++|..++.
T Consensus 276 -~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~ 353 (588)
T 1b3u_A 276 -EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSP 353 (588)
T ss_dssp -HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHH
T ss_pred -ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence 12233578999999999999999999999999984332 2111122234567777777 67788999999999998875
Q ss_pred CCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 043116 186 GKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGN 265 (482)
Q Consensus 186 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 265 (482)
.-.. ......++|.+..++++++++++..++.++..+....... .....+++.+..++.++++.++..++.+++.
T Consensus 354 ~~~~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~ 428 (588)
T 1b3u_A 354 ILGK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPL 428 (588)
T ss_dssp HHCH--HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HhhH--hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 4211 1123567888999999999999999999999887543211 1223567888889999999999999999999
Q ss_pred hhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHHH
Q 043116 266 IVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAG-NREQIQAVIDAGLIGPIVNLLQDAEFGTKKEA 344 (482)
Q Consensus 266 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a 344 (482)
++...... .....+++.+...+.++ +..+|..|+.+++.++.. .++ .....++|.+..++.+++..+|..+
T Consensus 429 l~~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~----~~~~~llp~l~~~~~~~~~~~R~~a 500 (588)
T 1b3u_A 429 LAGQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTT 500 (588)
T ss_dssp HHHHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH----HHHHHTHHHHHHTTTCSCHHHHHHH
T ss_pred HHHHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 87532111 11224678888999888 899999999999999862 222 1223588888888888899999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHH
Q 043116 345 AWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLE 424 (482)
Q Consensus 345 ~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 424 (482)
+++++.++.....+ .....+++.|..++++++++++..++++|..+....... + .....++
T Consensus 501 ~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-----------~----~~~~~~p 561 (588)
T 1b3u_A 501 LFCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS-----------T----LQSEVKP 561 (588)
T ss_dssp HHHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH-----------H----HHHHHHH
T ss_pred HHHHHHHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh-----------h----hHHHHHH
Confidence 99999998632221 123458999999999999999999999999998643211 1 1234467
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhc
Q 043116 425 KIENLQSHDNNDIHEMSVKILETYW 449 (482)
Q Consensus 425 ~l~~l~~~~~~~v~~~a~~~l~~~~ 449 (482)
.|..+..+++++|+..|...+..+-
T Consensus 562 ~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 562 ILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhh
Confidence 7888889999999999999988653
No 41
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.80 E-value=5.6e-16 Score=149.82 Aligned_cols=417 Identities=13% Similarity=0.159 Sum_probs=298.8
Q ss_pred hccHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCCCC----------------cHHHHH-hcCCHHHHHHhhcCCCChH
Q 043116 26 FEILPTMVAGVWS--DDNKVQLEATTLFRKMLSFDRNS----------------PIEKVI-QSGVVPRFVEFLMREDYPQ 86 (482)
Q Consensus 26 ~~~i~~l~~~l~s--~~~~~~~~a~~~L~~l~~~~~~~----------------~~~~~~-~~g~~~~L~~ll~~~~~~~ 86 (482)
.++++.|+..|+. +|.++...++..|.++.+....+ ..+.++ +.+.++.|+.+|++.+ ..
T Consensus 59 ~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~ 137 (651)
T 3grl_A 59 IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FH 137 (651)
T ss_dssp HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HH
T ss_pred hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HH
Confidence 3479999999984 57888888999999887754221 122333 5678999999999998 89
Q ss_pred HHHHHHHHHHHHhCCChH-hHHHHHhC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHH
Q 043116 87 LQFEAARALTNIASGTSE-NTKVAIDH-GAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAEL 164 (482)
Q Consensus 87 v~~~a~~~L~~l~~~~~~-~~~~~~~~-g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l 164 (482)
+|..++.+|..++...++ .++.++.. ++++.|+.+|.+..+.+|..++..|.+++.+++..++.+.-.|+++.|+.++
T Consensus 138 vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii 217 (651)
T 3grl_A 138 VRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDII 217 (651)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHH
Confidence 999999999999987777 67777754 9999999999999999999999999999999999999999999999999999
Q ss_pred cchh---hhhHHHHHHHHHHHhhcCCC-CCChhhhhhHHHHHHHHhccCCh------hHHHH---HHHHHHHhccCC---
Q 043116 165 NEHA---KLSMLRTATWTLSNFCRGKP-QPPFNQIRPALRVLAQLIRSNDE------KVLTD---ACRALAYLADGT--- 228 (482)
Q Consensus 165 ~~~~---~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~~~~L~~ll~~~~~------~~~~~---~l~~L~~l~~~~--- 228 (482)
.... ...+...|+.++.+|.+.++ +.......+++|.|..++..+++ ..... ++.++.-+...+
T Consensus 218 ~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~ 297 (651)
T 3grl_A 218 TEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPP 297 (651)
T ss_dssp HHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCH
T ss_pred HhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 5432 23678889999999999974 33333446889999999875432 13333 555666666442
Q ss_pred ---cHHHHHHHHhCcHHHHHHhhCCC--ChhhHHHHHHHHhHhhcCChhhHHHHHhcC---------chHHHHHHhcCCC
Q 043116 229 ---NDKIQAVIEAGVCPRLVKLLGHR--SRLVLTAALRTIGNIVTGDDFQTQCIINCG---------ALRYLLGLLIHNH 294 (482)
Q Consensus 229 ---~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~---------~i~~L~~ll~~~~ 294 (482)
......+.+.|++..++.++..+ ...++..|+.+++.+.++++.....+.+.. ++..++.++.+..
T Consensus 298 ~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~ 377 (651)
T 3grl_A 298 GATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQ 377 (651)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTS
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccc
Confidence 23466788999999999998765 567999999999999999988877776543 4444556676665
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHc----C------Ch---HHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHH
Q 043116 295 NKSIKKEVCWIISNITAGNREQIQAVIDA----G------LI---GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIK 361 (482)
Q Consensus 295 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~----~------~i---~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~ 361 (482)
...+|.+|++++..+..++++....+... . .+ ..+..-+.+.|+--.-.|+.++.++... +++...
T Consensus 378 ~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~-n~~~K~ 456 (651)
T 3grl_A 378 PFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQE-NATQKE 456 (651)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred cHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcC-CHHHHH
Confidence 78899999999999998877654444432 1 11 1234445556665556678888888874 555444
Q ss_pred HHHH--------c---CChHHHHhcCC-CCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHh
Q 043116 362 HLVR--------E---GCVKPLCDLLP-CPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENL 429 (482)
Q Consensus 362 ~l~~--------~---~~l~~L~~ll~-~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l 429 (482)
.+.. + -.+..+...+. ..++++...-+..|...+..++. .....+.+...++.|.+.
T Consensus 457 ~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~-----------AV~dFL~~~s~l~~L~~~ 525 (651)
T 3grl_A 457 QLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPI-----------AVTHFLHNSANVPFLTGQ 525 (651)
T ss_dssp HHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHH-----------HHHHHHHSTTHHHHHHHH
T ss_pred HHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChH-----------HHHHHHcCCchHHHHHHH
Confidence 3333 0 12444555554 34566666666666666654433 345566555567777766
Q ss_pred hcC--C--CHHHHHHHHHHHHHhcCCCCCC
Q 043116 430 QSH--D--NNDIHEMSVKILETYWCGRVVG 455 (482)
Q Consensus 430 ~~~--~--~~~v~~~a~~~l~~~~~~~~~~ 455 (482)
..+ . +.-|+-.+.-++--++.....+
T Consensus 526 i~~~~~~~~~lvqGL~a~LLGi~yef~~~~ 555 (651)
T 3grl_A 526 IAENLGEEEQLVQGLCALLLGISIYFNDNS 555 (651)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred HHhccCcchHHHHHHHHHHHHHHhhccCCC
Confidence 533 2 2446788888887766655444
No 42
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.79 E-value=3.5e-18 Score=180.36 Aligned_cols=355 Identities=14% Similarity=0.150 Sum_probs=258.9
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHH
Q 043116 28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTK 107 (482)
Q Consensus 28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 107 (482)
.-+.+++.+.++++.++..++.++..++...... .-.++++.+++.+.+++ +.+++.++.+|+.++...+....
T Consensus 91 ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~-----~wp~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~ 164 (852)
T 4fdd_A 91 IKSECLNNIGDSSPLIRATVGILITTIASKGELQ-----NWPDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILD 164 (852)
T ss_dssp HHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTT-----TCTTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcc-----ccHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhc
Confidence 3466777788888999999999999998864211 12457999999999988 89999999999999874333211
Q ss_pred HHH----hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116 108 VAI----DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF 183 (482)
Q Consensus 108 ~~~----~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L 183 (482)
.-. -..+++.+++++.++++.+|..|++++.++....+....... .++++.++..+ .+++..++..++++|..+
T Consensus 165 ~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~-~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l 242 (852)
T 4fdd_A 165 SDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI-DSFIENLFALA-GDEEPEVRKNVCRALVML 242 (852)
T ss_dssp HCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSH-HHHHHHHHHHH-TCCCHHHHHHHHHHHHHH
T ss_pred hhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHc-CCCCHHHHHHHHHHHHHH
Confidence 100 013567777888889999999999999998855432110000 12566677766 567889999999999999
Q ss_pred hcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHh---CcHHHHHHhh-----------C
Q 043116 184 CRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEA---GVCPRLVKLL-----------G 249 (482)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~---~~l~~L~~ll-----------~ 249 (482)
+...+.........+++.+...+.+.+++++..++..+..+++.... .. .... .+++.++..+ .
T Consensus 243 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~-~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~ 320 (852)
T 4fdd_A 243 LEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC-KD-VLVRHLPKLIPVLVNGMKYSDIDIILLKG 320 (852)
T ss_dssp HHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH-HH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC
T ss_pred HHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH-HH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcC
Confidence 98754333334567899999999999999999999999999865421 11 1211 4566666666 2
Q ss_pred C-----------CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 043116 250 H-----------RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQ 318 (482)
Q Consensus 250 ~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 318 (482)
+ .+..++..+..+|+.++...+.. ++ ..+++.+...+.++ ++.+|..|++++++++.+..+...
T Consensus 321 d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~ 395 (852)
T 4fdd_A 321 DVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PHILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMI 395 (852)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHG
T ss_pred CcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHH
Confidence 3 23457889999999998644322 11 24678888888888 999999999999999987766544
Q ss_pred HHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHH-HHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHh
Q 043116 319 AVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHE-QIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKV 397 (482)
Q Consensus 319 ~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~-~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~ 397 (482)
..+ .++++.++..+.++++.+|..+++++++++...... ...+ -.++++.|...+.++++.++..++++|.++++.
T Consensus 396 ~~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~--~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 396 PYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY--LKPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTT--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 433 357899999999999999999999999998631110 0011 124678888888889999999999999999976
Q ss_pred chh
Q 043116 398 GEA 400 (482)
Q Consensus 398 ~~~ 400 (482)
...
T Consensus 473 ~~~ 475 (852)
T 4fdd_A 473 ACT 475 (852)
T ss_dssp HGG
T ss_pred hhH
Confidence 544
No 43
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.77 E-value=3.7e-17 Score=172.49 Aligned_cols=396 Identities=13% Similarity=0.119 Sum_probs=277.0
Q ss_pred ccHHHHHHHh---cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCCh
Q 043116 27 EILPTMVAGV---WSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTS 103 (482)
Q Consensus 27 ~~i~~l~~~l---~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~ 103 (482)
+..+.+...+ .+.++.+|..|+..|.+..... ......-....+-+.+++.+.+++ +.+|..++.+++.++....
T Consensus 45 ~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~-w~~~~~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~ 122 (852)
T 4fdd_A 45 DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAH-FQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGE 122 (852)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTS-GGGCCHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcC
Confidence 3344555555 4667899999999999988652 221112223345566777788888 8999999999999987431
Q ss_pred HhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH----HhCChHHHHHHHcchhhhhHHHHHHHH
Q 043116 104 ENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVL----SQGALIPLLAELNEHAKLSMLRTATWT 179 (482)
Q Consensus 104 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----~~~~i~~l~~~l~~~~~~~~~~~a~~~ 179 (482)
.. ...+.++.|+..+.++++.+++.++.+|+.++...+.....-. -..+++.++..+ .+++..++..++++
T Consensus 123 ~~----~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~a 197 (852)
T 4fdd_A 123 LQ----NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVAC 197 (852)
T ss_dssp TT----TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHH
T ss_pred cc----ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHH
Confidence 11 1236789999999999999999999999999854332211000 012355556655 56778899999999
Q ss_pred HHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHH
Q 043116 180 LSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAA 259 (482)
Q Consensus 180 L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a 259 (482)
+..+....+.........+++.+..++.+++++++..++++|..++...++.....++ ++++.+...+.+.++.++..|
T Consensus 198 L~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a 276 (852)
T 4fdd_A 198 VNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEA 276 (852)
T ss_dssp HHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHH
Confidence 9988765432222234578899999999999999999999999999766544332222 477888888899999999999
Q ss_pred HHHHhHhhcCChhhHHHHHhc---CchHHHHHHhc-----------C--C--------CchhHHHHHHHHHHHHhcCCHH
Q 043116 260 LRTIGNIVTGDDFQTQCIINC---GALRYLLGLLI-----------H--N--------HNKSIKKEVCWIISNITAGNRE 315 (482)
Q Consensus 260 ~~~L~~l~~~~~~~~~~l~~~---~~i~~L~~ll~-----------~--~--------~~~~v~~~a~~~L~nl~~~~~~ 315 (482)
+.++..++.... ... .... .+++.++..+. + . .+..+|+.|+.++..++...++
T Consensus 277 ~e~l~~l~~~~~-~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~ 354 (852)
T 4fdd_A 277 CEFWLTLAEQPI-CKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD 354 (852)
T ss_dssp HHHHHHHTTSTT-HHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHhcchh-HHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH
Confidence 999999986432 111 2211 45666666662 2 0 1345789999999999863222
Q ss_pred HHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 043116 316 QIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENIL 395 (482)
Q Consensus 316 ~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~ 395 (482)
.++. .+++.+.+.+.++++.+|..|++++++++.... +.... .-.++++.+...++++++.|+..+.+++.++.
T Consensus 355 ---~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~-~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~ 428 (852)
T 4fdd_A 355 ---ELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCM-QGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYA 428 (852)
T ss_dssp ---GGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTH-HHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTH
T ss_pred ---HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcch-HHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 1222 367777788888899999999999999998643 33222 12357899999999999999999999999998
Q ss_pred HhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043116 396 KVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWC 450 (482)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 450 (482)
........ ..+.. +.++.|.+.+.++++.++..|.+.+..+..
T Consensus 429 ~~~~~~~~-------~~~~~-----~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 429 HWVVSQPP-------DTYLK-----PLMTELLKRILDSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp HHHHHSCT-------TTTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHhccchH-------HHHHH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 75433211 11122 335667777778899999999999887764
No 44
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.74 E-value=3.4e-16 Score=157.59 Aligned_cols=341 Identities=15% Similarity=0.162 Sum_probs=249.2
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHH
Q 043116 28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTK 107 (482)
Q Consensus 28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 107 (482)
.++.++++++++++.++..+...+..++... ++ .. .-+++.+.+-+++++ +.+|..|+++|+++. .++...
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~e---~~--~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~--~~~~~~ 120 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-PD---MA--IMAVNSFVKDCEDPN-PLIRALAVRTMGCIR--VDKITE 120 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-HH---HH--HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCC--SGGGHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-ch---HH--HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCC--hHHHHH
Confidence 5777888888899999988888888887643 11 11 224678888899988 999999999999985 455444
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC
Q 043116 108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK 187 (482)
Q Consensus 108 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~ 187 (482)
. +++.+.+++.++++.+|..|++++.+++...+.. +.+.+.++.+..++ .+.++.++..|+++|..++...
T Consensus 121 ~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~~ 191 (591)
T 2vgl_B 121 Y-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISESH 191 (591)
T ss_dssp H-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTSC
T ss_pred H-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhhC
Confidence 3 3578899999999999999999999998655542 22345677888888 6788999999999999999886
Q ss_pred CCC-ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHh
Q 043116 188 PQP-PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266 (482)
Q Consensus 188 ~~~-~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 266 (482)
+.. ........++.++..+...++..+..+++++..++..++... ..+++.+..++++.++.|+..|++++..+
T Consensus 192 ~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~l 266 (591)
T 2vgl_B 192 PNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMKF 266 (591)
T ss_dssp CSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred CCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 543 333446778888888888889899999999998885544332 24677888889999999999999999998
Q ss_pred hcC---ChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH-----------------HH-H----HHH
Q 043116 267 VTG---DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNRE-----------------QI-Q----AVI 321 (482)
Q Consensus 267 ~~~---~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~-----------------~~-~----~l~ 321 (482)
... +++..+.+. ..+.+.|+.++. + ++.+|..|+.+|..++...++ .+ . .+.
T Consensus 267 ~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~ 343 (591)
T 2vgl_B 267 LELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMI 343 (591)
T ss_dssp CCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHH
T ss_pred hhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHH
Confidence 742 333333222 245566665553 5 777888888888877641111 11 1 111
Q ss_pred ---Hc----CChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHH
Q 043116 322 ---DA----GLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENI 394 (482)
Q Consensus 322 ---~~----~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l 394 (482)
+. .+++.|..++.+.+.+++..++++++.++... +.... .+++.|++++......++..+..++..+
T Consensus 344 ~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~-~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~i 417 (591)
T 2vgl_B 344 RLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKV-EQSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDI 417 (591)
T ss_dssp HTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC-HHHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-hhHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 11 24556667777788999999999999999864 33322 3678899999888888888888888888
Q ss_pred HHhchh
Q 043116 395 LKVGEA 400 (482)
Q Consensus 395 ~~~~~~ 400 (482)
+...+.
T Consensus 418 i~~~p~ 423 (591)
T 2vgl_B 418 FRKYPN 423 (591)
T ss_dssp HHHSCS
T ss_pred HHHCcc
Confidence 765443
No 45
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.74 E-value=1.1e-14 Score=140.78 Aligned_cols=379 Identities=11% Similarity=0.114 Sum_probs=278.1
Q ss_pred hhhhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH-hcCCHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 043116 20 LNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVI-QSGVVPRFVEFLMREDYPQLQFEAARALTNI 98 (482)
Q Consensus 20 ~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l 98 (482)
+.+.+..+.|+.|+.+|++++..++..++..|..++...+....+.+. ..++++.|+.+|+++. .-+|..++..|.++
T Consensus 115 d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r-E~iRneallLL~~L 193 (651)
T 3grl_A 115 EIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR-EVIRNDGVLLLQAL 193 (651)
T ss_dssp HHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS-HHHHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch-HHHHHHHHHHHHHH
Confidence 456677889999999999999999999999999999875332445555 4599999999999988 89999999999999
Q ss_pred hCCChHhHHHHHhCCChHHHHHhhCCCC----HHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhh----
Q 043116 99 ASGTSENTKVAIDHGAVPIFVKLLASPS----DDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKL---- 170 (482)
Q Consensus 99 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~---- 170 (482)
+.++++.++.+.-.|+++.|..++..+. ..+...|+.++.|+...++..+..+.+.|.++.|..++....+.
T Consensus 194 t~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~ 273 (651)
T 3grl_A 194 TRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWS 273 (651)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCC
T ss_pred hcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccH
Confidence 9999999999999999999999998644 37888999999999999999999999999999999988533221
Q ss_pred -hHHHH---HHHHHHHhhcCCCCC------C-hhhhhhHHHHHHHHhccC--ChhHHHHHHHHHHHhccCCcHHHHHHHH
Q 043116 171 -SMLRT---ATWTLSNFCRGKPQP------P-FNQIRPALRVLAQLIRSN--DEKVLTDACRALAYLADGTNDKIQAVIE 237 (482)
Q Consensus 171 -~~~~~---a~~~L~~L~~~~~~~------~-~~~~~~~~~~L~~ll~~~--~~~~~~~~l~~L~~l~~~~~~~~~~~~~ 237 (482)
....+ ++.++.-++...... + .....|+++.++.++... ...++..++.+++.+..+++...+.+.+
T Consensus 274 ~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~ 353 (651)
T 3grl_A 274 AQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFAS 353 (651)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhh
Confidence 12333 555666666653210 1 112368899999998765 5789999999999999988877777665
Q ss_pred hC---------cHHHHHHhhCC-CChhhHHHHHHHHhHhhcCChhhHHHHHhc----------C---chHHHHHHhcCCC
Q 043116 238 AG---------VCPRLVKLLGH-RSRLVLTAALRTIGNIVTGDDFQTQCIINC----------G---ALRYLLGLLIHNH 294 (482)
Q Consensus 238 ~~---------~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~----------~---~i~~L~~ll~~~~ 294 (482)
.. ++..++.++.+ ....+|..++.++..+..+++.....+... + .-..+...+-+.
T Consensus 354 ~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~- 432 (651)
T 3grl_A 354 VNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFST- 432 (651)
T ss_dssp CEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSS-
T ss_pred ccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccC-
Confidence 32 34445555544 446789999999999999887655555432 1 112344555566
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHH--------cC---ChHHHHHHHh-cCChhHHHHHHHHHHHhhcCCCHHHHHH
Q 043116 295 NKSIKKEVCWIISNITAGNREQIQAVID--------AG---LIGPIVNLLQ-DAEFGTKKEAAWVISNATSGGTHEQIKH 362 (482)
Q Consensus 295 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~--------~~---~i~~L~~ll~-~~~~~~~~~a~~aL~~l~~~~~~~~~~~ 362 (482)
++.--+-|+.++..+..++++....+.. .. .++.+...+. ..++.++..-+..|+.+.. +++.....
T Consensus 433 d~~~~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~-e~p~AV~d 511 (651)
T 3grl_A 433 DSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLS-NCPIAVTH 511 (651)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-CChHHHHH
Confidence 7766677899999998888876655444 11 2555566655 3456666666666666666 47888888
Q ss_pred HHHcCC-hHHHHhcCCC--CCH--HHHHHHHHHHHHHHHhchhc
Q 043116 363 LVREGC-VKPLCDLLPC--PDP--QIVTVCLIGLENILKVGEAE 401 (482)
Q Consensus 363 l~~~~~-l~~L~~ll~~--~~~--~v~~~~l~~L~~l~~~~~~~ 401 (482)
+...+. ++.|++.+.+ ++. -++-.|.-.|+-.+++..+.
T Consensus 512 FL~~~s~l~~L~~~i~~~~~~~~~lvqGL~a~LLGi~yef~~~~ 555 (651)
T 3grl_A 512 FLHNSANVPFLTGQIAENLGEEEQLVQGLCALLLGISIYFNDNS 555 (651)
T ss_dssp HHHSTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred HHcCCchHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccCCC
Confidence 888764 8888877643 222 34555666666667665543
No 46
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.70 E-value=2.7e-15 Score=136.54 Aligned_cols=258 Identities=14% Similarity=0.093 Sum_probs=201.5
Q ss_pred HhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 043116 67 IQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR 146 (482)
Q Consensus 67 ~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 146 (482)
...+.++.|+..|.+++ +.+|..|+++|+++.. + +.++.|+.++.++++.+|..|+++|+.+......
T Consensus 20 ~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 35678999999999988 9999999999999963 2 3578899999999999999999999999643222
Q ss_pred hHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 043116 147 CRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLAD 226 (482)
Q Consensus 147 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~ 226 (482)
... .++.+...+..+++..++..++++|..+....+ .....+++.+..++.++++.++..++++|+++..
T Consensus 88 ~~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 88 EDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp HHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred chH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence 111 233343333367788999999999999985431 1235788999999999999999999999998763
Q ss_pred CCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHH
Q 043116 227 GTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWII 306 (482)
Q Consensus 227 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L 306 (482)
.+.++.|..++.++++.++..++++|+.+....+ ..++.+...+.++ ++.+|..|+++|
T Consensus 158 -----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~aL 216 (280)
T 1oyz_A 158 -----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIGL 216 (280)
T ss_dssp ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 2478999999999999999999999999854332 3567888999888 999999999999
Q ss_pred HHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC-CCHHHHH
Q 043116 307 SNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC-PDPQIVT 385 (482)
Q Consensus 307 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~ 385 (482)
+++. + ...++.|+..+.++ +++..++.+|+.+.. + .+++.|.+++.+ ++++++.
T Consensus 217 ~~~~--~---------~~~~~~L~~~l~d~--~vr~~a~~aL~~i~~---~---------~~~~~L~~~l~~~~~~~~~~ 271 (280)
T 1oyz_A 217 SYRK--D---------KRVLSVLCDELKKN--TVYDDIIEAAGELGD---K---------TLLPVLDTMLYKFDDNEIIT 271 (280)
T ss_dssp HHTT--C---------GGGHHHHHHHHTSS--SCCHHHHHHHHHHCC---G---------GGHHHHHHHHTTSSCCHHHH
T ss_pred HHhC--C---------HhhHHHHHHHhcCc--cHHHHHHHHHHhcCc---h---------hhhHHHHHHHhcCCCcHHHH
Confidence 9985 2 24788888888764 488999999998854 1 367888887764 5667777
Q ss_pred HHHHHHH
Q 043116 386 VCLIGLE 392 (482)
Q Consensus 386 ~~l~~L~ 392 (482)
.++..|.
T Consensus 272 ~~~~~l~ 278 (280)
T 1oyz_A 272 SAIDKLK 278 (280)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 7776664
No 47
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.69 E-value=1.1e-15 Score=153.71 Aligned_cols=374 Identities=14% Similarity=0.158 Sum_probs=231.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHH
Q 043116 29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKV 108 (482)
Q Consensus 29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 108 (482)
++.+.+++.+.++.++..|+.++.++.... ++.. ...++++.+..+|.+++ +.++..|+.+|+.++.++++....
T Consensus 123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~~---~~~~~~~~l~~lL~d~d-~~V~~~A~~aL~~i~~~~~~~~~~ 197 (591)
T 2vgl_B 123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQMV---EDQGFLDSLRDLIADSN-PMVVANAVAALSEISESHPNSNLL 197 (591)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCCH---HHHHHHHHHHHTTSCSC-HHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHhhC-hhhc---ccccHHHHHHHHhCCCC-hhHHHHHHHHHHHHHhhCCCccch
Confidence 566888999999999999999999998865 3322 23567899999999888 999999999999999866543100
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC-
Q 043116 109 AIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK- 187 (482)
Q Consensus 109 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~- 187 (482)
-...+.+..|+..+.+.++-.+...+.+++.++...+.... .+++.+...+ ++.+..++..|++++.++....
T Consensus 198 ~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l-~~~~~~V~~ea~~~i~~l~~~~~ 271 (591)
T 2vgl_B 198 DLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRL-SHANSAVVLSAVKVLMKFLELLP 271 (591)
T ss_dssp CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCS-CSSTTHHHHHHHHHHHHSCCSCC
T ss_pred hccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHH-cCCChHHHHHHHHHHHHHhhccC
Confidence 00112356677777778888888899999988754433221 2455666666 6778899999999999997532
Q ss_pred --CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHH----------------------HHH---Hh--
Q 043116 188 --PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQ----------------------AVI---EA-- 238 (482)
Q Consensus 188 --~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~----------------------~~~---~~-- 238 (482)
+.........+.+.++.++ +++++++..++.+|..+....+.... .+. +.
T Consensus 272 ~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~n 350 (591)
T 2vgl_B 272 KDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQAN 350 (591)
T ss_dssp BTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSST
T ss_pred CCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhh
Confidence 2121122345566667655 47899999999999988753221110 000 00
Q ss_pred --CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHH
Q 043116 239 --GVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQ 316 (482)
Q Consensus 239 --~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~ 316 (482)
.+++.|..++.+.+..++..++++|+.++...+.... ..++.|+.++... ...++.++..++.++....++.
T Consensus 351 v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~-~~~v~~e~i~~l~~ii~~~p~~ 424 (591)
T 2vgl_B 351 IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTK-VNYVVQEAIVVIRDIFRKYPNK 424 (591)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHccc-chHHHHHHHHHHHHHHHHCcch
Confidence 1233344444445555555555555555544332211 2344555555555 4455555555555554322221
Q ss_pred HHHHHHcCChHHHHHHHh-cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 043116 317 IQAVIDAGLIGPIVNLLQ-DAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENIL 395 (482)
Q Consensus 317 ~~~l~~~~~i~~L~~ll~-~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~ 395 (482)
...+++.|.+.+. ..+++++..++|+|+........ . ...++.+.+-+...++.++..++.++.+++
T Consensus 425 -----~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~--~-----~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~ 492 (591)
T 2vgl_B 425 -----YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN--A-----DELLESFLEGFHDESTQVQLTLLTAIVKLF 492 (591)
T ss_dssp -----CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT--H-----HHHHHHHSTTCSSSCHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC--H-----HHHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 1235566666665 34567777788888877653221 0 123455555555667788888888888888
Q ss_pred HhchhccccCCCCcccHHHHHHHHhchHHHHHHhh-cCCCHHHHHHHHHHHHHh
Q 043116 396 KVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQ-SHDNNDIHEMSVKILETY 448 (482)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~~~~~v~~~a~~~l~~~ 448 (482)
...+... ...+ ...+.... ++.+.+|+++|...+.-+
T Consensus 493 ~~~p~~~-----------~~~i-----~~ll~~~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 493 LKKPSET-----------QELV-----QQVLSLATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp TTCCSTT-----------HHHH-----HHHHHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred hcCchHH-----------HHHH-----HHHHHHhhhcCCChHHHHHHHHHHHHH
Confidence 6433210 1111 12233333 458899999998776544
No 48
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.66 E-value=1.2e-14 Score=132.21 Aligned_cols=256 Identities=12% Similarity=0.045 Sum_probs=199.1
Q ss_pred hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChH
Q 043116 25 KFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSE 104 (482)
Q Consensus 25 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~ 104 (482)
....++.|++.|.++++.++..|++.|.++... +.++.|+.++.+++ +.+|..|+++|+.+.....
T Consensus 21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~------------~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~~- 86 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGGQ------------DAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKK- 86 (280)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCCH------------HHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTT-
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHccCCc------------hHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccc-
Confidence 445899999999999999999999999988631 25888999999998 8999999999999975222
Q ss_pred hHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116 105 NTKVAIDHGAVPIFV-KLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF 183 (482)
Q Consensus 105 ~~~~~~~~g~i~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L 183 (482)
... .+++.|. .++.++++.+|..++++|+++....+.... ..++.++..+ .++++.++..++++|.++
T Consensus 87 ~~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l-~d~~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 87 CED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVI 155 (280)
T ss_dssp THH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC
T ss_pred cch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHh-hCCCHHHHHHHHHHHHhc
Confidence 111 1234444 246788999999999999999743332211 2467788888 778899999999999987
Q ss_pred hcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHH
Q 043116 184 CRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTI 263 (482)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L 263 (482)
... ..++.|..++.++++.++..++++|+.+....+ ..++.+..++.++++.++..++++|
T Consensus 156 ~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL 216 (280)
T 1oyz_A 156 NDK----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGL 216 (280)
T ss_dssp -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCH----------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 542 368899999999999999999999999864332 2457889999999999999999999
Q ss_pred hHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-CChhHHH
Q 043116 264 GNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQD-AEFGTKK 342 (482)
Q Consensus 264 ~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~ 342 (482)
+++.. ...++.|+..+.++ + ++..++++|+.+.. + ..++.|.+++.+ .++++..
T Consensus 217 ~~~~~-----------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~--~---------~~~~~L~~~l~~~~~~~~~~ 271 (280)
T 1oyz_A 217 SYRKD-----------KRVLSVLCDELKKN-T--VYDDIIEAAGELGD--K---------TLLPVLDTMLYKFDDNEIIT 271 (280)
T ss_dssp HHTTC-----------GGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC--G---------GGHHHHHHHHTTSSCCHHHH
T ss_pred HHhCC-----------HhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc--h---------hhhHHHHHHHhcCCCcHHHH
Confidence 99862 24678889999775 4 89999999998843 2 478888888874 5677777
Q ss_pred HHHHHHH
Q 043116 343 EAAWVIS 349 (482)
Q Consensus 343 ~a~~aL~ 349 (482)
.++.++.
T Consensus 272 ~~~~~l~ 278 (280)
T 1oyz_A 272 SAIDKLK 278 (280)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 7777664
No 49
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.64 E-value=3.7e-14 Score=150.38 Aligned_cols=396 Identities=14% Similarity=0.164 Sum_probs=253.2
Q ss_pred cHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh
Q 043116 28 ILPTMVAGVWSD--DNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN 105 (482)
Q Consensus 28 ~i~~l~~~l~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~ 105 (482)
.++.+.+.++++ ++.++..|+.++..++..-............+++.+...+.+++ ++++..++.+|..++...++.
T Consensus 173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~ 251 (876)
T 1qgr_A 173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHH
Confidence 467777888766 68899999999999876421100001111235777778787777 899999999999998766555
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh----------------------hHHHHHHhCChHHHHHH
Q 043116 106 TKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR----------------------CRDFVLSQGALIPLLAE 163 (482)
Q Consensus 106 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~----------------------~~~~~~~~~~i~~l~~~ 163 (482)
....+...+++.++..+.+.++.++..+++++.+++..... .+..+ ..+++.++..
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ll~~ll~~ 329 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL--QYLVPILTQT 329 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH--HHHhHHHHHH
Confidence 44445557889999988888999999999999988743110 01111 2245666777
Q ss_pred Hcc------hhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCc-HHHHHHH
Q 043116 164 LNE------HAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTN-DKIQAVI 236 (482)
Q Consensus 164 l~~------~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~-~~~~~~~ 236 (482)
+.. +.+..++..+..++..++...+ ......+++.+...+.++++.++..++++++.++.... +......
T Consensus 330 l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~ 406 (876)
T 1qgr_A 330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406 (876)
T ss_dssp TTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH
T ss_pred hhcccccccccccHHHHHHHHHHHHHHHHCc---HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 642 2245678888888888886543 23456788888888999999999999999999997654 3333222
Q ss_pred HhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhH--HHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH
Q 043116 237 EAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQT--QCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNR 314 (482)
Q Consensus 237 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 314 (482)
..+++.++..+.++++.+|..|++++++++...+... ... -..+++.++..+.+ ++.++..++|++.+++....
T Consensus 407 -~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~ 482 (876)
T 1qgr_A 407 -IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSA--EPRVASNVCWAFSSLAEAAY 482 (876)
T ss_dssp -HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhh
Confidence 3578899999999999999999999999997543311 001 12467788888866 37899999999999985311
Q ss_pred --------------HHHHHHHHcCChHHHHHHHhcC---ChhHHHHHHHHHHHh--------------------------
Q 043116 315 --------------EQIQAVIDAGLIGPIVNLLQDA---EFGTKKEAAWVISNA-------------------------- 351 (482)
Q Consensus 315 --------------~~~~~l~~~~~i~~L~~ll~~~---~~~~~~~a~~aL~~l-------------------------- 351 (482)
+.....+ ..+++.|+..+... +..++..+..++..+
T Consensus 483 ~~~~~~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~ 561 (876)
T 1qgr_A 483 EAADVADDQEEPATYCLSSSF-ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQV 561 (876)
T ss_dssp HTTSCTTSCCCCCCCSSTTTH-HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccccccchhhhHhH-HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHH
Confidence 0011111 12455555555432 234444444444444
Q ss_pred ------------------------------hcCCC-HHHHHHHHHcCChHHHHhcCCCCC--HHHHHHHHHHHHHHHHhc
Q 043116 352 ------------------------------TSGGT-HEQIKHLVREGCVKPLCDLLPCPD--PQIVTVCLIGLENILKVG 398 (482)
Q Consensus 352 ------------------------------~~~~~-~~~~~~l~~~~~l~~L~~ll~~~~--~~v~~~~l~~L~~l~~~~ 398 (482)
+.... .....++ ..+++.+..++++.+ +.++..++.++..++...
T Consensus 562 ~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~ 639 (876)
T 1qgr_A 562 LQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS--DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVL 639 (876)
T ss_dssp HTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH--HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH--HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHH
Confidence 33222 1111111 124666777777664 478888999999988753
Q ss_pred hhccccCCCCcccHHHHHHHHhchHHHHHHhhcCC-CHHHHHHHHHHHHHhc
Q 043116 399 EAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHD-NNDIHEMSVKILETYW 449 (482)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~~ 449 (482)
... ..++... .++.+.....+. ++.++..|...+..+.
T Consensus 640 ~~~--------~~~~~~~-----~~~~l~~~l~~~~~~~vr~~a~~~l~~l~ 678 (876)
T 1qgr_A 640 GGE--------FLKYMEA-----FKPFLGIGLKNYAEYQVCLAAVGLVGDLC 678 (876)
T ss_dssp GGG--------GGGGHHH-----HHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred Hhh--------HHHHHHH-----HHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence 221 1122222 245555555444 7778777776665543
No 50
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.63 E-value=4.5e-14 Score=149.45 Aligned_cols=355 Identities=14% Similarity=0.220 Sum_probs=245.2
Q ss_pred ccHHHHHHHhcC-------CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHh
Q 043116 27 EILPTMVAGVWS-------DDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIA 99 (482)
Q Consensus 27 ~~i~~l~~~l~s-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~ 99 (482)
..+|.++..+.. +++.++..+..+|..++...+.... ..+++.+.+.+.+++ ..+|..|+++++.++
T Consensus 324 ~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~-----~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~ 397 (861)
T 2bpt_A 324 DVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHIL-----EPVLEFVEQNITADN-WRNREAAVMAFGSIM 397 (861)
T ss_dssp HHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGH-----HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHH-----HHHHHHHHHHcCCCC-hhHHHHHHHHHHHHH
Confidence 467888888874 2357888899999888875321111 235667777788888 799999999999999
Q ss_pred CCCh-HhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh---HHHHHHhCChHHHHHHHcchhhhhHHHH
Q 043116 100 SGTS-ENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC---RDFVLSQGALIPLLAELNEHAKLSMLRT 175 (482)
Q Consensus 100 ~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~~i~~l~~~l~~~~~~~~~~~ 175 (482)
.... +.....++ .+++.++..+.++++.+|..++|+++.++...... ...+ ..+++.++..+.+ . +.++..
T Consensus 398 ~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~l~~l~~~l~~-~-~~v~~~ 472 (861)
T 2bpt_A 398 DGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL--PGVVQACLIGLQD-H-PKVATN 472 (861)
T ss_dssp SSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH--HHHHHHHHHHHTS-C-HHHHHH
T ss_pred cCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH--HHHHHHHHHHhcc-C-hHHHHH
Confidence 7542 33333333 47888999999999999999999999998431110 0011 1246677777733 3 788999
Q ss_pred HHHHHHHhhcCCC----CCChhhhhhHHHHHHHHhccCC--hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhC
Q 043116 176 ATWTLSNFCRGKP----QPPFNQIRPALRVLAQLIRSND--EKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLG 249 (482)
Q Consensus 176 a~~~L~~L~~~~~----~~~~~~~~~~~~~L~~ll~~~~--~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~ 249 (482)
+++++.+++.... .........+++.+...+.+.+ +.++..++.+++.++..........+. .+++.++..+.
T Consensus 473 a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~ 551 (861)
T 2bpt_A 473 CSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLG 551 (861)
T ss_dssp HHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHH
Confidence 9999999987532 2222345788889999998544 789999999999998654433222222 34555555553
Q ss_pred C---------------CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCch-hHHHHHHHHHHHHhcCC
Q 043116 250 H---------------RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNK-SIKKEVCWIISNITAGN 313 (482)
Q Consensus 250 ~---------------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~-~v~~~a~~~L~nl~~~~ 313 (482)
. ....++..++.+|.+++...+....... ..+++.++..+++. +. .++..++++++.++...
T Consensus 552 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~ 629 (861)
T 2bpt_A 552 QTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKK-DSAFIEDDVFYAISALAASL 629 (861)
T ss_dssp HHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHH
Confidence 2 1345778899999999875443222111 25778888888887 56 89999999999998632
Q ss_pred HHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCC--HHHHHHHHHHH
Q 043116 314 REQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPD--PQIVTVCLIGL 391 (482)
Q Consensus 314 ~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~--~~v~~~~l~~L 391 (482)
.......+. .+++.++..+.+.++.++..++.++..++.........++ ..+++.+.+.+.+++ ++++..++.++
T Consensus 630 ~~~~~~~l~-~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l 706 (861)
T 2bpt_A 630 GKGFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVF 706 (861)
T ss_dssp GGGGHHHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHH
T ss_pred hhhHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHH
Confidence 232333333 3888999999888889999999999998765433222222 236777777777654 78999999999
Q ss_pred HHHHHhc
Q 043116 392 ENILKVG 398 (482)
Q Consensus 392 ~~l~~~~ 398 (482)
..++...
T Consensus 707 ~~l~~~~ 713 (861)
T 2bpt_A 707 GDIASNI 713 (861)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998764
No 51
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.63 E-value=2.6e-14 Score=151.26 Aligned_cols=396 Identities=17% Similarity=0.160 Sum_probs=257.6
Q ss_pred cHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh
Q 043116 28 ILPTMVAGVWSD--DNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN 105 (482)
Q Consensus 28 ~i~~l~~~l~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~ 105 (482)
.++.+...+.++ ++.++..|+.++..+...-............+++.+...+.+++ +++|..++.+|..++...++.
T Consensus 180 ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~~~r~~a~~~l~~l~~~~~~~ 258 (861)
T 2bpt_A 180 ILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAED-IEVQAAAFGCLCKIMSKYYTF 258 (861)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSC-HHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHH
Confidence 467778888766 79999999999998764321000000111235677777888888 899999999999998744433
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh------------------hHHHHHHhCChHHHHHHHcch
Q 043116 106 TKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR------------------CRDFVLSQGALIPLLAELNEH 167 (482)
Q Consensus 106 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~------------------~~~~~~~~~~i~~l~~~l~~~ 167 (482)
....+...+++.+...+.+.++.++..|+.++..++..... .+..+ ..+++.++..+.+.
T Consensus 259 ~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~il~~ll~~l~~~ 336 (861)
T 2bpt_A 259 MKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI--KDVVPNLLNLLTRQ 336 (861)
T ss_dssp CHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH--HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH--HHHHHHHHHHHHhc
Confidence 22223225677788888889999999999999988743211 11111 23567777777432
Q ss_pred ------hhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCc-HHHHHHHHhCc
Q 043116 168 ------AKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTN-DKIQAVIEAGV 240 (482)
Q Consensus 168 ------~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~-~~~~~~~~~~~ 240 (482)
.+..++..+..+|..++...+ ......+++.+...+.+.++.++..++.+++.++.... ........ .+
T Consensus 337 ~~d~~d~~~~~r~~a~~~L~~l~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~i 412 (861)
T 2bpt_A 337 NEDPEDDDWNVSMSAGACLQLFAQNCG---NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QA 412 (861)
T ss_dssp CCC-CCCCCHHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HH
T ss_pred ccccccccCcHHHHHHHHHHHHHHHcc---HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HH
Confidence 224677788899988886532 23456788888888889999999999999999997653 33332332 57
Q ss_pred HHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhH-HHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCC----HH
Q 043116 241 CPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQT-QCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGN----RE 315 (482)
Q Consensus 241 l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~----~~ 315 (482)
++.++..+.++++.+|..++++++.++....... ..-.-..+++.++..+.+. +.++..+++++.+++... +.
T Consensus 413 l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~ 490 (861)
T 2bpt_A 413 LPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPS 490 (861)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccch
Confidence 8889999999999999999999999986422110 0001124677888888654 789999999999998631 12
Q ss_pred HHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC---------------
Q 043116 316 QIQAVIDAGLIGPIVNLLQDA--EFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC--------------- 378 (482)
Q Consensus 316 ~~~~l~~~~~i~~L~~ll~~~--~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~--------------- 378 (482)
.....++ .+++.|+..+.+. ++.++..++.+++.++.........++.. .++.+++.+..
T Consensus 491 ~l~~~~~-~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~--l~~~l~~~l~~~~~~~~~i~~~~~~~ 567 (861)
T 2bpt_A 491 PIYNFYP-ALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSAS--ISTFVMDKLGQTMSVDENQLTLEDAQ 567 (861)
T ss_dssp GGGGGHH-HHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHH--HHHHHHHHHHHHTTSCGGGCCHHHHH
T ss_pred hhHHHHH-HHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHH--HHHHHHHHHHHHHhhhcccCChhhHH
Confidence 2222222 4677888888743 37899999999999987554333222221 34444444321
Q ss_pred CCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCH-HHHHHHHHHHHHh
Q 043116 379 PDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNN-DIHEMSVKILETY 448 (482)
Q Consensus 379 ~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~-~v~~~a~~~l~~~ 448 (482)
...+++..++.+|..++...... ..++... .++.+.++..+.+. .+++.+...+..+
T Consensus 568 ~~~~~~~~~~~~l~~l~~~~~~~--------~~~~~~~-----l~~~l~~~l~~~~~~~v~~~~~~~l~~l 625 (861)
T 2bpt_A 568 SLQELQSNILTVLAAVIRKSPSS--------VEPVADM-----LMGLFFRLLEKKDSAFIEDDVFYAISAL 625 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGG--------TGGGHHH-----HHHHHHHHHHSTTGGGTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh--------hHHHHHH-----HHHHHHHHHccCCCCcHHHHHHHHHHHH
Confidence 13457778889999888754431 1112222 24445555554444 5566555555443
No 52
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.63 E-value=6.9e-15 Score=148.53 Aligned_cols=362 Identities=13% Similarity=0.074 Sum_probs=257.2
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH
Q 043116 27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT 106 (482)
Q Consensus 27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 106 (482)
-.+..+.+-++++++.++..|+++|.++... .+. ..+++.+.+++.+++ +.+|..|+.++.++...+|+..
T Consensus 107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~-------~~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v 177 (618)
T 1w63_A 107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGSS-------EMC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELM 177 (618)
T ss_dssp HHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH-------HHH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH-------HHH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHH
Confidence 4577888888899999999999999998632 122 346888899999998 9999999999999988666643
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcc--------------hhhhhH
Q 043116 107 KVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNE--------------HAKLSM 172 (482)
Q Consensus 107 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--------------~~~~~~ 172 (482)
. +.++.+..++.+.++.++..|+++|..++..++.....+ ...++.++..|.+ ..++-.
T Consensus 178 ~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 250 (618)
T 1w63_A 178 E-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFL 250 (618)
T ss_dssp G-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHH
T ss_pred H-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChH
Confidence 2 678888899999999999999999999997655432222 2578888887743 135666
Q ss_pred HHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc------cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHH
Q 043116 173 LRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR------SNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVK 246 (482)
Q Consensus 173 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~------~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 246 (482)
+..++.+|..++...+ .......+.|..++. +.+..+...+++++..+... +.. .. ..+..+..
T Consensus 251 q~~il~~L~~l~~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~l----~~-~a~~~L~~ 320 (618)
T 1w63_A 251 QVRILRLLRILGRNDD----DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SGL----RV-LAINILGR 320 (618)
T ss_dssp HHHHHHHHHHHTTTCH----HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HHH----HH-HHHHHHHH
T ss_pred HHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HHH----HH-HHHHHHHH
Confidence 7778888888887542 112334444555443 23467888999999887642 211 11 35678888
Q ss_pred hhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCh
Q 043116 247 LLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326 (482)
Q Consensus 247 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i 326 (482)
++.++++.++..|+.+|+.++...+... ......++..+.++ +..+|..|..++..++.... +.. ++
T Consensus 321 ~L~~~d~~vr~~aL~~L~~i~~~~p~~~-----~~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~~n--v~~-----iv 387 (618)
T 1w63_A 321 FLLNNDKNIRYVALTSLLKTVQTDHNAV-----QRHRSTIVDCLKDL-DVSIKRRAMELSFALVNGNN--IRG-----MM 387 (618)
T ss_dssp HHTCSSTTTHHHHHHHHHHHHHHHHHHH-----GGGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCSSS--THH-----HH
T ss_pred HHhCCCCchHHHHHHHHHHHHhhCHHHH-----HHHHHHHHHHccCC-ChhHHHHHHHHHHHHccccc--HHH-----HH
Confidence 8999999999999999999987544322 13566788889988 99999999999999986321 222 45
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCC
Q 043116 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDN 406 (482)
Q Consensus 327 ~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~ 406 (482)
+.|...+.+.+.+++..++.+|+.++....+... . +++.|+++++.....+...+...+..++...+..
T Consensus 388 ~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~-~-----~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l----- 456 (618)
T 1w63_A 388 KELLYFLDSCEPEFKADCASGIFLAAEKYAPSKR-W-----HIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEM----- 456 (618)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHH-H-----HHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCST-----
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHH-H-----HHHHHHHHHHhccchhHHHHHHHHHHHHhcChhH-----
Confidence 7788888889999999999999999875332222 2 3677777777666666666666777777543321
Q ss_pred CCcccHHHHHHHHhchHHHHHHhhc--CCCHHHHHHHHHHHHHhcC
Q 043116 407 IGDVNQYAQLVEEAEGLEKIENLQS--HDNNDIHEMSVKILETYWC 450 (482)
Q Consensus 407 ~~~~~~~~~~l~~~~~~~~l~~l~~--~~~~~v~~~a~~~l~~~~~ 450 (482)
... .+..|.++.. ...+.+...+.|++-.|-.
T Consensus 457 -------~~~-----~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~ 490 (618)
T 1w63_A 457 -------HAY-----TVQRLYKAILGDYSQQPLVQVAAWCIGEYGD 490 (618)
T ss_dssp -------HHH-----HHHHHHHHHHHCCSCSHHHHHHHHHHHHHHH
T ss_pred -------HHH-----HHHHHHHHHhcccccHHHHHHHHHHHhhhHH
Confidence 111 1223333322 1344556678999998863
No 53
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.59 E-value=2.2e-13 Score=133.42 Aligned_cols=391 Identities=11% Similarity=0.076 Sum_probs=265.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHhCCChHhHH
Q 043116 29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMRED-YPQLQFEAARALTNIASGTSENTK 107 (482)
Q Consensus 29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 107 (482)
+..++..+.++|+..+..|-..|.++.... ..+++..|..++.+++ ++.+|..|+..|.++.........
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~ 73 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK 73 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence 445666677889999999999998865421 1235667777776652 389999999999998764311110
Q ss_pred H-----H------HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchh--hhhHHH
Q 043116 108 V-----A------IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHA--KLSMLR 174 (482)
Q Consensus 108 ~-----~------~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~~~~~~ 174 (482)
. . ....+-..++..+.++++.+ ..+..+++.++....... .-.+.++.++..+ .+. +..++.
T Consensus 74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l-~~~~~~~~~r~ 148 (462)
T 1ibr_B 74 AQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANV-TNPNSTEHMKE 148 (462)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHH-HCTTCCHHHHH
T ss_pred HHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHh-ccCCCCHHHHH
Confidence 0 0 01123355777788777778 888889998874321100 0124677888888 444 778899
Q ss_pred HHHHHHHHhhcCC-CCCChhhhhhHHHHHHHHhccC--ChhHHHHHHHHHHHhccCCcHHHH-HHHHhCcHHHHHHhhCC
Q 043116 175 TATWTLSNFCRGK-PQPPFNQIRPALRVLAQLIRSN--DEKVLTDACRALAYLADGTNDKIQ-AVIEAGVCPRLVKLLGH 250 (482)
Q Consensus 175 ~a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~ll~~~--~~~~~~~~l~~L~~l~~~~~~~~~-~~~~~~~l~~L~~ll~~ 250 (482)
.++.+|..++... +.........+++.+...+.++ ++.++..++.++.++......... .....-+++.+...+.+
T Consensus 149 ~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 228 (462)
T 1ibr_B 149 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC 228 (462)
T ss_dssp HHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence 9999999999753 2223344467889999999887 789999999999997754321110 01111245666677788
Q ss_pred CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH---------------
Q 043116 251 RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNRE--------------- 315 (482)
Q Consensus 251 ~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~--------------- 315 (482)
+++.++..++.+|..++...+......+..++++.++..+.+. ++.++..++..+..++.....
T Consensus 229 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 307 (462)
T 1ibr_B 229 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPP 307 (462)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCc
Confidence 8999999999999999875554322222226777888888887 889999999999988753110
Q ss_pred ------HHHHHHHcCChHHHHHHHhc-------CChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHH
Q 043116 316 ------QIQAVIDAGLIGPIVNLLQD-------AEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQ 382 (482)
Q Consensus 316 ------~~~~l~~~~~i~~L~~ll~~-------~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~ 382 (482)
..+..+ ..++|.+++.+.. ++..++..|..+|..++........ ..+++.+...+.++++.
T Consensus 308 ~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~-----~~~~~~l~~~l~~~~~~ 381 (462)
T 1ibr_B 308 EHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV-----PHVLPFIKEHIKNPDWR 381 (462)
T ss_dssp SCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHH-----HHHHHHHHHHTTCSSHH
T ss_pred cchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHH-----HHHHHHHHHHhcCCChH
Confidence 011111 2356667776643 2457899999999999764332221 23677888889999999
Q ss_pred HHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 043116 383 IVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGR 452 (482)
Q Consensus 383 v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 452 (482)
++..++.+|..+........ +...+ .+.++.+...+.++++.|+..|.+.+.++...-
T Consensus 382 ~r~aal~~l~~l~~~~~~~~----------~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 382 YRDAAVMAFGCILEGPEPSQ----------LKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp HHHHHHHHHHHTSSSSCTTT----------TCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhcCCcHHH----------HHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999986322110 01111 345788888899999999999999999887643
No 54
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.58 E-value=1.3e-13 Score=146.12 Aligned_cols=408 Identities=13% Similarity=0.153 Sum_probs=261.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH-
Q 043116 28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT- 106 (482)
Q Consensus 28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~- 106 (482)
.++.+.+.++++++.++..|+++|..++.....+.... .-..++|.++..+.+++ +.+|..|++++++++...+...
T Consensus 367 ~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~-~~~~~l~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~ 444 (876)
T 1qgr_A 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAAI 444 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGGTS
T ss_pred HHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCchhcc
Confidence 45566677778889999999999999987642122222 22447899999999988 9999999999999987433210
Q ss_pred -HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh---------------hhHHHHHHhCChHHHHHHHcchh--
Q 043116 107 -KVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSS---------------RCRDFVLSQGALIPLLAELNEHA-- 168 (482)
Q Consensus 107 -~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~---------------~~~~~~~~~~~i~~l~~~l~~~~-- 168 (482)
...+ ..+++.++..+.+. +.++..++++|.+++.... .....+ ..+++.++..+....
T Consensus 445 ~~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~ 520 (876)
T 1qgr_A 445 NDVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGH 520 (876)
T ss_dssp STTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSC
T ss_pred cHHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcc
Confidence 0111 14567888888774 8999999999999983211 011111 124666666664322
Q ss_pred hhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhcc-----------CC----hhHHHHHHHHHHHhccCCc-HHH
Q 043116 169 KLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRS-----------ND----EKVLTDACRALAYLADGTN-DKI 232 (482)
Q Consensus 169 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~-----------~~----~~~~~~~l~~L~~l~~~~~-~~~ 232 (482)
+..++..+..++..+....+.........+++.++..+.. .+ ++++..++.++..++.... ...
T Consensus 521 ~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~ 600 (876)
T 1qgr_A 521 QNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA 600 (876)
T ss_dssp STTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred hhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhh
Confidence 3467778888999888876544444556777777766552 12 4567888999999886654 332
Q ss_pred HHHHHhCcHHHHHHhhCCCC--hhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 043116 233 QAVIEAGVCPRLVKLLGHRS--RLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNIT 310 (482)
Q Consensus 233 ~~~~~~~~l~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~ 310 (482)
... -..+++.++.++++.. +.++..++.+++.++..........+. .+++.+...+.+..++.+|..++++++.++
T Consensus 601 ~~~-~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~ 678 (876)
T 1qgr_A 601 LQI-SDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLC 678 (876)
T ss_dssp HTT-HHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred hHH-HHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence 211 1356788888887764 478999999999998643222221222 367888888877547889999999999998
Q ss_pred cCCHHHHHHHHHcCChHHHHHHHhc--CChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCC----CH---
Q 043116 311 AGNREQIQAVIDAGLIGPIVNLLQD--AEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCP----DP--- 381 (482)
Q Consensus 311 ~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~----~~--- 381 (482)
......+...+. .+++.+++.+.+ .+.+++..+++++++++....++...++ ..+++.+...++.+ ++
T Consensus 679 ~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l--~~~~~~l~~~~~~~~~~~d~~~~ 755 (876)
T 1qgr_A 679 RALQSNIIPFCD-EVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYL--EVVLNTLQQASQAQVDKSDYDMV 755 (876)
T ss_dssp HHHGGGGHHHHH-HHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHTCCCCTTCHHHH
T ss_pred HHHHHhhhhhHH-HHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHhccCCCCChHHH
Confidence 632223333333 578888888886 4678999999999999763222222222 12556666655533 22
Q ss_pred ----HHHHHHHHHHHHHHHhchhccc--cCCCCcccHHHHHHHHhchHHHHHHhhcCC--CHHHHHHHHHHHHHhcCC
Q 043116 382 ----QIVTVCLIGLENILKVGEAEKN--TDNIGDVNQYAQLVEEAEGLEKIENLQSHD--NNDIHEMSVKILETYWCG 451 (482)
Q Consensus 382 ----~v~~~~l~~L~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~--~~~v~~~a~~~l~~~~~~ 451 (482)
.++..++.++..++........ ..+.....++...+ ++.+..+..++ +..++..|..++..+...
T Consensus 756 ~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~ 828 (876)
T 1qgr_A 756 DYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDLCTA 828 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 6788888888888765332100 00000122233333 34455554555 788999998888876543
No 55
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.58 E-value=3.8e-13 Score=135.85 Aligned_cols=327 Identities=12% Similarity=0.082 Sum_probs=235.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHH
Q 043116 28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTK 107 (482)
Q Consensus 28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 107 (482)
.++.+.+++++.++.++..|+.++.++.... ++.. .++++.+..++.+++ +.++..|+.+|..++..+++...
T Consensus 143 l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~v-----~~~~~~l~~lL~D~d-~~V~~~Al~~L~~i~~~~~~~~~ 215 (618)
T 1w63_A 143 LAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PELM-----EMFLPATKNLLNEKN-HGVLHTSVVLLTEMCERSPDMLA 215 (618)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGGG-----GGGGGGTTTSTTCCC-HHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hHHH-----HHHHHHHHHHhCCCC-HhHHHHHHHHHHHHHHhChHHHH
Confidence 3688888999999999999999999999864 2222 267888889999888 99999999999999986665433
Q ss_pred HHHhCCChHHHHHhhCC---------------CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHc-----ch
Q 043116 108 VAIDHGAVPIFVKLLAS---------------PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELN-----EH 167 (482)
Q Consensus 108 ~~~~~g~i~~L~~ll~~---------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-----~~ 167 (482)
.+. ..++.++..|.+ .++-.+...+.+|+.++..++...+ ...+.+..++. ++
T Consensus 216 ~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~ 288 (618)
T 1w63_A 216 HFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKN 288 (618)
T ss_dssp HHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSST
T ss_pred HHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccc
Confidence 333 567888776642 4788888999999999976654322 24445555542 23
Q ss_pred hhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh
Q 043116 168 AKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKL 247 (482)
Q Consensus 168 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 247 (482)
.+..+...+++++..+... ......+++.+..++.+++++++..++.+|..++...+. .+. .....++.+
T Consensus 289 ~~~aV~~ea~~~i~~l~~~-----~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~----~~~-~~~~~i~~~ 358 (618)
T 1w63_A 289 VGNAILYETVLTIMDIKSE-----SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN----AVQ-RHRSTIVDC 358 (618)
T ss_dssp HHHHHHHHHHHHHHHSCCC-----HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH----HHG-GGHHHHHHG
T ss_pred hHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH----HHH-HHHHHHHHH
Confidence 4567888899998886432 223346788899999999999999999999999965432 222 356788999
Q ss_pred hCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChH
Q 043116 248 LGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIG 327 (482)
Q Consensus 248 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~ 327 (482)
+.+++..++..|+.+|..++.... ... +++.+...+.+. +.++|..++.+|+.++...+..... .++
T Consensus 359 l~d~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~-d~e~r~~~v~~I~~la~k~~~~~~~-----~v~ 425 (618)
T 1w63_A 359 LKDLDVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSC-EPEFKADCASGIFLAAEKYAPSKRW-----HID 425 (618)
T ss_dssp GGSSCHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHC-CHHHHHHHHHHHHHHHHSSCCCHHH-----HHH
T ss_pred ccCCChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhCccHHH-----HHH
Confidence 999999999999999999986432 221 356778888877 8999999999999999743222222 367
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC--CCHHHHHHHHHHHHHHHHh
Q 043116 328 PIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC--PDPQIVTVCLIGLENILKV 397 (482)
Q Consensus 328 ~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~~l~~L~~l~~~ 397 (482)
.+++++......++..+..++..+....+ +.... ++..|.+.+.+ .+..+...++|+|+.+...
T Consensus 426 ~ll~lL~~~~~~v~~~~~~~l~~ii~~~p-~l~~~-----~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~ 491 (618)
T 1w63_A 426 TIMRVLTTAGSYVRDDAVPNLIQLITNSV-EMHAY-----TVQRLYKAILGDYSQQPLVQVAAWCIGEYGDL 491 (618)
T ss_dssp HHHHHHHHTGGGSCSSHHHHHHHHHHHSC-STHHH-----HHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHhcCh-hHHHH-----HHHHHHHHHhcccccHHHHHHHHHHHhhhHHH
Confidence 78888887766777777777777766422 22222 34445555442 2334455688888888653
No 56
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.56 E-value=3e-13 Score=148.34 Aligned_cols=407 Identities=12% Similarity=0.095 Sum_probs=271.0
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH
Q 043116 27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT 106 (482)
Q Consensus 27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 106 (482)
..++.+++.+.+.|++++..|...|.+....... ....-....+++.+++.+.+++ +.+|..|+.+|+.++...++.
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~-~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~- 82 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSI-KLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY- 82 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCC-SCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH-
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHccccc-CCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHH-
Confidence 3478889999999999999999999988765311 1111112346778889998888 899999999999998754431
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh------HHHHHHhCChHHHHHHHcchhhhhHHHHHHHHH
Q 043116 107 KVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC------RDFVLSQGALIPLLAELNEHAKLSMLRTATWTL 180 (482)
Q Consensus 107 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~------~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L 180 (482)
.. ..+++.++..+.++++.+|..|..+|+.++...... .... -..+++.++..+.++.+..++..++.++
T Consensus 83 --~~-~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l 158 (1230)
T 1u6g_C 83 --QV-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIM 158 (1230)
T ss_dssp --HH-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHH
T ss_pred --HH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 11 135788888888888999999999999988433211 1111 1236888888884356778999999999
Q ss_pred HHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC-ChhhHHHH
Q 043116 181 SNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR-SRLVLTAA 259 (482)
Q Consensus 181 ~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a 259 (482)
..++...+..-......+++.+...+.++++.++..++.+++.++...++. + -..+++.++..+.+. ++.++..+
T Consensus 159 ~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~~~~~~r~~a 234 (1230)
T 1u6g_C 159 ADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTY 234 (1230)
T ss_dssp HHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTH
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhccCCchhHHHHH
Confidence 999965432222345788899999999999999999999999999765432 1 224577777777544 34688889
Q ss_pred HHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-----
Q 043116 260 LRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ----- 334 (482)
Q Consensus 260 ~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~----- 334 (482)
+.+++.++...+..... .-..+++.++..+.+. ++.+|..+++++..++...++.+..++. .+++.++..+.
T Consensus 235 ~~~l~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~ 311 (1230)
T 1u6g_C 235 IQCIAAISRQAGHRIGE-YLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNY 311 (1230)
T ss_dssp HHHHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC---
T ss_pred HHHHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCC
Confidence 99999988754432211 1136889999999887 8899999999999998743322222221 23333333321
Q ss_pred --------------------------------cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHH
Q 043116 335 --------------------------------DAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQ 382 (482)
Q Consensus 335 --------------------------------~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~ 382 (482)
+....+|..|+.++..++.........+ -..+++.+...+.+.++.
T Consensus 312 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~--~~~l~~~l~~~l~d~~~~ 389 (1230)
T 1u6g_C 312 NYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF--YKTVSPALISRFKEREEN 389 (1230)
T ss_dssp ---------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH--HTTTHHHHHSTTSCSSSH
T ss_pred CCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHcCCCchH
Confidence 1124578899999999987433212222 245788899999888999
Q ss_pred HHHHHHHHHHHHHHhchhccccCCCCcccHH------HHHHH--HhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043116 383 IVTVCLIGLENILKVGEAEKNTDNIGDVNQY------AQLVE--EAEGLEKIENLQSHDNNDIHEMSVKILETYWCG 451 (482)
Q Consensus 383 v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~------~~~l~--~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 451 (482)
++..++.++..++.......... .....+ ...+. -...++.+.+...++++.++..+...+..+...
T Consensus 390 Vr~~a~~~l~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~ 464 (1230)
T 1u6g_C 390 VKADVFHAYLSLLKQTRPVQSWL--CDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV 464 (1230)
T ss_dssp HHHHHHHHHHHHHHHHCCC--------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccccc--cCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 99999999988876432100000 000000 01110 112355566667788888888888877766554
No 57
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.55 E-value=2.6e-14 Score=139.97 Aligned_cols=361 Identities=12% Similarity=0.097 Sum_probs=245.5
Q ss_pred hccHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcH-----------HHHHhcCCHHHHHHhhcCCCChHHHHHHH
Q 043116 26 FEILPTMVAGVWSD--DNKVQLEATTLFRKMLSFDRNSPI-----------EKVIQSGVVPRFVEFLMREDYPQLQFEAA 92 (482)
Q Consensus 26 ~~~i~~l~~~l~s~--~~~~~~~a~~~L~~l~~~~~~~~~-----------~~~~~~g~~~~L~~ll~~~~~~~v~~~a~ 92 (482)
.+.+..|+..+.++ ++.++..|+..|.++.... .... ..-....+-..++..+.+++ +.+ ..++
T Consensus 34 ~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~-~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~ 110 (462)
T 1ibr_B 34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSK-DPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSAS 110 (462)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHH
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcccc-chHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHH
Confidence 44556677777654 6899999999999998653 1000 00112234455777888877 678 8899
Q ss_pred HHHHHHhCCC-hHhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCC-hhhHHHHHHhCChHHHHHHHcchh
Q 043116 93 RALTNIASGT-SENTKVAIDHGAVPIFVKLLASP--SDDVREQAVWALGNVAGDS-SRCRDFVLSQGALIPLLAELNEHA 168 (482)
Q Consensus 93 ~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~ 168 (482)
.+++.++... +.. ...++++.|+..+.++ ++.+++.++.+|+.++... +..-.... ..+++.++..+.+..
T Consensus 111 ~~i~~ia~~~~~~~----~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~ 185 (462)
T 1ibr_B 111 QCVAGIACAEIPVN----QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEE 185 (462)
T ss_dssp HHHHHHHHHHGGGT----CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHhcccc----ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCC
Confidence 9999998632 110 1246789999999888 8999999999999998532 21101111 125677777884432
Q ss_pred -hhhHHHHHHHHHHHhhcCCC-C-CChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHH
Q 043116 169 -KLSMLRTATWTLSNFCRGKP-Q-PPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLV 245 (482)
Q Consensus 169 -~~~~~~~a~~~L~~L~~~~~-~-~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~ 245 (482)
+..++..+++++.++..... . ........+++.+...+.+++++++..++.+|..++...+......+..++++.++
T Consensus 186 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~ 265 (462)
T 1ibr_B 186 PSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITI 265 (462)
T ss_dssp CCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999998764321 0 01111123577777788888999999999999999865443222122225677778
Q ss_pred HhhCCCChhhHHHHHHHHhHhhcCChh---------------------hHHHHHhcCchHHHHHHhcCC------CchhH
Q 043116 246 KLLGHRSRLVLTAALRTIGNIVTGDDF---------------------QTQCIINCGALRYLLGLLIHN------HNKSI 298 (482)
Q Consensus 246 ~ll~~~~~~v~~~a~~~L~~l~~~~~~---------------------~~~~l~~~~~i~~L~~ll~~~------~~~~v 298 (482)
..+.+.++.++..++..+..++..... ..+... ..+++.++..+... .+..+
T Consensus 266 ~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~ 344 (462)
T 1ibr_B 266 EAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNP 344 (462)
T ss_dssp HHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSH
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchH
Confidence 888889999999999999988753210 001001 23566677777432 14578
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC
Q 043116 299 KKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC 378 (482)
Q Consensus 299 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~ 378 (482)
|..|+.+|..++...++ .++ ..+++.+...+.+.++.+|..|+.+++.++....++.... .-..+++.+...+.+
T Consensus 345 r~~a~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~-~l~~~~~~l~~~l~d 419 (462)
T 1ibr_B 345 CKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKD 419 (462)
T ss_dssp HHHHHHHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHH-HHHHHHHHHHHHhcC
Confidence 99999999999873322 222 2467777788888999999999999999997544221111 114578999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhchh
Q 043116 379 PDPQIVTVCLIGLENILKVGEA 400 (482)
Q Consensus 379 ~~~~v~~~~l~~L~~l~~~~~~ 400 (482)
+++.++..++++|.++......
T Consensus 420 ~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 420 PSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp SCHHHHHHHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999976543
No 58
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.49 E-value=7.6e-13 Score=145.13 Aligned_cols=398 Identities=13% Similarity=0.125 Sum_probs=256.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCc----HHHHHhcCCHHHHHHhhcC-CCChHHHHHHHHHHHHHhCCC
Q 043116 28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSP----IEKVIQSGVVPRFVEFLMR-EDYPQLQFEAARALTNIASGT 102 (482)
Q Consensus 28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~g~~~~L~~ll~~-~~~~~v~~~a~~~L~~l~~~~ 102 (482)
.++.+++.+.++++.++..|+.+|..++....... ...-....++|.|+..+.+ ++ +.++..|+.+|..++...
T Consensus 87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~ 165 (1230)
T 1u6g_C 87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQ 165 (1230)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHh
Confidence 45666666666667777777777777765532210 0112234578889999984 66 899999999999998422
Q ss_pred hHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHH
Q 043116 103 SENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSN 182 (482)
Q Consensus 103 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 182 (482)
++...... ..+++.+...+.++++.+|..|+.+|+.++...+. .+ -...++.++..+....+...+..++.++..
T Consensus 166 ~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~ 240 (1230)
T 1u6g_C 166 GGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAA 240 (1230)
T ss_dssp CSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred HhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 11100001 23567778888888999999999999999855432 11 123577888888554444567778888888
Q ss_pred hhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCC------------
Q 043116 183 FCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH------------ 250 (482)
Q Consensus 183 L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~------------ 250 (482)
++...+..-......++|.+...+.+.+++++..++.++..++........... ..+++.++..+..
T Consensus 241 l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~ 319 (1230)
T 1u6g_C 241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDED 319 (1230)
T ss_dssp HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-----------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccc
Confidence 887643322234578999999999999999999999999988864332211111 1234444444421
Q ss_pred -------------------------CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHH
Q 043116 251 -------------------------RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWI 305 (482)
Q Consensus 251 -------------------------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~ 305 (482)
..+.+|..|+.++..++...+......+ ..+++.++..+.+. +..+|..++.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~ 397 (1230)
T 1u6g_C 320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHA 397 (1230)
T ss_dssp -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHH
T ss_pred cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHHH
Confidence 1245788999999999875443333333 35778888888777 88899999998
Q ss_pred HHHHhc--CC-----------------HHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 043116 306 ISNITA--GN-----------------REQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVRE 366 (482)
Q Consensus 306 L~nl~~--~~-----------------~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~ 366 (482)
+..++. +. ......++ ..+++.+.+.+.++++.++..++.+++.++.........++ .
T Consensus 398 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l--~ 474 (1230)
T 1u6g_C 398 YLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI--P 474 (1230)
T ss_dssp HHHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--H
T ss_pred HHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH--H
Confidence 888775 11 11122222 23566777778888999999999999998764321111111 2
Q ss_pred CChHHHHhcCCCCCH--HHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHH
Q 043116 367 GCVKPLCDLLPCPDP--QIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKI 444 (482)
Q Consensus 367 ~~l~~L~~ll~~~~~--~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~ 444 (482)
.+++.+...+.++++ .++..++..+..++...... .+...+ ...++.|.....+++..+...|...
T Consensus 475 ~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~----------~~~~~l--~~llp~L~~~l~d~~~~v~~~al~~ 542 (1230)
T 1u6g_C 475 VLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQ----------VFHPHV--QALVPPVVACVGDPFYKITSEALLV 542 (1230)
T ss_dssp HHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGG----------GGHHHH--TTTHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHH----------HHHhHH--HHHHHHHHHHHcccchHHHHHHHHH
Confidence 367888888887764 88888888888887532211 112222 2345666666677777776666666
Q ss_pred HHHhc
Q 043116 445 LETYW 449 (482)
Q Consensus 445 l~~~~ 449 (482)
+..+.
T Consensus 543 l~~l~ 547 (1230)
T 1u6g_C 543 TQQLV 547 (1230)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
No 59
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.45 E-value=6e-12 Score=109.09 Aligned_cols=192 Identities=21% Similarity=0.224 Sum_probs=158.9
Q ss_pred hhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCC
Q 043116 23 QSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGT 102 (482)
Q Consensus 23 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~ 102 (482)
....+.++.|++.|+++++.++..|+..|..+... +.++.|+.++.+++ +.++..|+++|+.+..
T Consensus 15 ~~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~-- 79 (211)
T 3ltm_A 15 RADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE------------RAVEPLIKALKDED-AWVRRAAADALGQIGD-- 79 (211)
T ss_dssp -CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------------GGHHHHHHHTTCSC-HHHHHHHHHHHHHHCC--
T ss_pred hcCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc------------cHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC--
Confidence 34567899999999999999999999999987542 36899999999988 9999999999999853
Q ss_pred hHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHH
Q 043116 103 SENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSN 182 (482)
Q Consensus 103 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 182 (482)
.+.++.|+.++.++++.+|..|+++|+.+.. + +.++.|+..+ .+++..++..++++|..
T Consensus 80 ---------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l-~d~~~~vr~~a~~aL~~ 138 (211)
T 3ltm_A 80 ---------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--E---------RAVEPLIKAL-KDEDWFVRIAAAFALGE 138 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHT-TCSSHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHH-hCCCHHHHHHHHHHHHH
Confidence 2468999999999999999999999999852 2 2577888888 77889999999999999
Q ss_pred hhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHH
Q 043116 183 FCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRT 262 (482)
Q Consensus 183 L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~ 262 (482)
+.. ...++.|..++.++++.++..++.+|+.+.. ...++.|..++.++++.++..|..+
T Consensus 139 ~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~a 197 (211)
T 3ltm_A 139 IGD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNY 197 (211)
T ss_dssp HCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 843 3578889999999999999999999999863 1346778888889999999999999
Q ss_pred HhHhhcCCh
Q 043116 263 IGNIVTGDD 271 (482)
Q Consensus 263 L~~l~~~~~ 271 (482)
|.++.....
T Consensus 198 L~~~~~~~~ 206 (211)
T 3ltm_A 198 LETHKSFNH 206 (211)
T ss_dssp HHC------
T ss_pred HHhcCCCCC
Confidence 999876443
No 60
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.44 E-value=7.9e-12 Score=108.34 Aligned_cols=187 Identities=21% Similarity=0.180 Sum_probs=156.8
Q ss_pred cCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 043116 69 SGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCR 148 (482)
Q Consensus 69 ~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 148 (482)
.+.++.|+.+|++++ +.+|..|++.|+.+.. .+.++.|+.++.++++.+|..|+++|+.+.. +
T Consensus 18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--~--- 80 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E--- 80 (211)
T ss_dssp GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--G---
T ss_pred HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H---
Confidence 457899999999988 9999999999998854 2578999999999999999999999999852 2
Q ss_pred HHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCC
Q 043116 149 DFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGT 228 (482)
Q Consensus 149 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~ 228 (482)
+.++.++..+ .+.++.++..++++|..+.. ...++.|..++.++++.++..++.+|+.+..
T Consensus 81 ------~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 81 ------RAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp ------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 3577888888 77888999999999998853 3578899999999999999999999999863
Q ss_pred cHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHH
Q 043116 229 NDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISN 308 (482)
Q Consensus 229 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~n 308 (482)
...++.|..++.++++.++..++.+|+.+.. ...++.|..+++++ ++.+|..|..+|.+
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET 200 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence 1357889999999999999999999999853 23567788888888 99999999999999
Q ss_pred HhcC
Q 043116 309 ITAG 312 (482)
Q Consensus 309 l~~~ 312 (482)
+...
T Consensus 201 ~~~~ 204 (211)
T 3ltm_A 201 HKSF 204 (211)
T ss_dssp ----
T ss_pred cCCC
Confidence 8763
No 61
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.43 E-value=2.7e-11 Score=104.07 Aligned_cols=185 Identities=22% Similarity=0.253 Sum_probs=156.3
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCCh
Q 043116 113 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPF 192 (482)
Q Consensus 113 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 192 (482)
+..+.+++.|.++++.+|..|+++|+.+.. .+.++.++..+ .+.+..++..++++|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence 457899999999999999999999998852 13577888888 67788999999999998753
Q ss_pred hhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChh
Q 043116 193 NQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDF 272 (482)
Q Consensus 193 ~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 272 (482)
...++.+..++.++++.++..++++|+.+.. ...++.+..++.++++.++..++++|+.+..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 3578899999999999999999999999763 1357889999999999999999999999853
Q ss_pred hHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhh
Q 043116 273 QTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNAT 352 (482)
Q Consensus 273 ~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~ 352 (482)
...++.|..++.++ ++.+|..|+++|+.+. .++ .++.|..++.++++.++..|..+|..+-
T Consensus 137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~--~~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--GER---------VRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--SHH---------HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--chh---------HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 24678899999988 9999999999999983 333 5677888889999999999999999875
Q ss_pred c
Q 043116 353 S 353 (482)
Q Consensus 353 ~ 353 (482)
.
T Consensus 198 ~ 198 (201)
T 3ltj_A 198 S 198 (201)
T ss_dssp -
T ss_pred h
Confidence 3
No 62
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.41 E-value=1.2e-11 Score=106.22 Aligned_cols=185 Identities=22% Similarity=0.230 Sum_probs=157.2
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh
Q 043116 26 FEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN 105 (482)
Q Consensus 26 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~ 105 (482)
.+..+.+++.|+++++.++..|+..|..+... +.++.|+.++.+++ +.++..|+++|+.+.. +
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~------------~~~~~L~~~l~~~~-~~vr~~a~~~L~~~~~--~-- 75 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE------------RAVEPLIKALKDED-AWVRRAAADALGQIGD--E-- 75 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG------------GGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--G--
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh------------hHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC--H--
Confidence 35679999999999999999999999987542 36899999999888 9999999999999853 2
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhc
Q 043116 106 TKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCR 185 (482)
Q Consensus 106 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~ 185 (482)
+.++.|+.++.++++.+|..|+++|+.+.. + ..++.++..+ .+.++.++..++++|..+..
T Consensus 76 -------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 76 -------RAVEPLIKALKDEDGWVRQSAAVALGQIGD--E---------RAVEPLIKAL-KDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp -------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHTC
T ss_pred -------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC
Confidence 468999999999999999999999999852 2 2567788888 67788999999999999853
Q ss_pred CCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 043116 186 GKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGN 265 (482)
Q Consensus 186 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 265 (482)
...++.|..++.++++.++..++.+|+.+.. + ..++.|..++.++++.++..|..+|..
T Consensus 137 ----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 137 ----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLET 195 (201)
T ss_dssp ----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4578889999999999999999999999852 1 246788888888999999999999988
Q ss_pred hh
Q 043116 266 IV 267 (482)
Q Consensus 266 l~ 267 (482)
+.
T Consensus 196 l~ 197 (201)
T 3ltj_A 196 HK 197 (201)
T ss_dssp CC
T ss_pred HH
Confidence 74
No 63
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.39 E-value=1.9e-10 Score=115.78 Aligned_cols=331 Identities=14% Similarity=0.118 Sum_probs=231.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHH
Q 043116 28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTK 107 (482)
Q Consensus 28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 107 (482)
..+..++++.+++...+..+...+..++... + +.++- +++.+.+-+++++ +.++..|+++++++.. ++...
T Consensus 75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~-~---e~~~L--~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~~ 145 (621)
T 2vgl_A 75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSN-S---ELIRL--INNAIKNDLASRN-PTFMGLALHCIANVGS--REMAE 145 (621)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC-H---HHHHH--HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHccCC-c---HHHHH--HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHHH
Confidence 4567778888889999988888888887653 2 21211 3567778888898 9999999999999954 55443
Q ss_pred HHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhc
Q 043116 108 VAIDHGAVPIFVKLL--ASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCR 185 (482)
Q Consensus 108 ~~~~~g~i~~L~~ll--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~ 185 (482)
.+++.+.+++ .+.++.+|..|+.++.++....|.. +...+.++.+..++ .+.++.++..|+.++..++.
T Consensus 146 -----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 146 -----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp -----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHHH
Confidence 3568888999 8899999999999999998655542 22236788888888 77888999999999999998
Q ss_pred CCCCCChhhhhhHHHHHHHHhccC-------------ChhHHHHHHHHHHHhccCC-cHHHHHHHHhCcHHHHHHhh---
Q 043116 186 GKPQPPFNQIRPALRVLAQLIRSN-------------DEKVLTDACRALAYLADGT-NDKIQAVIEAGVCPRLVKLL--- 248 (482)
Q Consensus 186 ~~~~~~~~~~~~~~~~L~~ll~~~-------------~~~~~~~~l~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll--- 248 (482)
..+..-......+++.|..++..+ ++-.+...+..+..++... ++....+.+ ++..++..+
T Consensus 217 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~ 294 (621)
T 2vgl_A 217 KNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEP 294 (621)
T ss_dssp HCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSC
T ss_pred hChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccC
Confidence 653211111223334444444322 5778999999999988643 333333332 344444332
Q ss_pred ------CCCC--hhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 043116 249 ------GHRS--RLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAV 320 (482)
Q Consensus 249 ------~~~~--~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 320 (482)
++.+ ..+..+|+.++..+.. .++... ..+..|..++.++ ++.+|..+...|..++...+. ...
T Consensus 295 ~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~--~~~ 365 (621)
T 2vgl_A 295 PKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS--HEA 365 (621)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT--HHH
T ss_pred cccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc--HHH
Confidence 1122 3788888888888753 333222 3566788889887 899999999999999875432 112
Q ss_pred HHcCChHHHHHHHh-cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 043116 321 IDAGLIGPIVNLLQ-DAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILK 396 (482)
Q Consensus 321 ~~~~~i~~L~~ll~-~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~ 396 (482)
+. ...+.++..+. ++|..++..++..+..++. +.+... ++..|...+.+.+.+++..++..+..+..
T Consensus 366 ~~-~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~---~~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 366 VK-THIETVINALKTERDVSVRQRAVDLLYAMCD---RSNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAE 433 (621)
T ss_dssp HH-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC---HHHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHhccCCCHhHHHHHHHHHHHHcC---hhhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 32 46778888888 8999999999999999974 344444 45556666666777777777777776654
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.30 E-value=1.4e-08 Score=102.24 Aligned_cols=333 Identities=13% Similarity=0.060 Sum_probs=225.1
Q ss_pred HHHHHHHhcC---CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh
Q 043116 29 LPTMVAGVWS---DDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN 105 (482)
Q Consensus 29 i~~l~~~l~s---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~ 105 (482)
+..+-+.+++ .++..+..++.-+..+-..+ .+. ..+....++++++++ ...+..+.-++..++..+++.
T Consensus 37 ~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G-~d~------s~~~~~vvkl~~s~~-~~~Krl~YL~l~~~~~~~~e~ 108 (621)
T 2vgl_A 37 LANIRSKFKGDKALDGYSKKKYVCKLLFIFLLG-HDI------DFGHMEAVNLLSSNR-YTEKQIGYLFISVLVNSNSEL 108 (621)
T ss_dssp HHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHS-CCC------CSCHHHHHHGGGCSC-HHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC-CCC------chhHHHHHHHhcCCC-HHHHHHHHHHHHHHccCCcHH
Confidence 4445555553 35666666655444433322 221 236777889999999 899999999999998876654
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHc-chhhhhHHHHHHHHHHHhh
Q 043116 106 TKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELN-EHAKLSMLRTATWTLSNFC 184 (482)
Q Consensus 106 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~L~ 184 (482)
... +++.+.+-+.++++.++..|+++++++. .++..+ .+++.+.+.+. .+.++.+++.|+.++..+.
T Consensus 109 ~~L-----~iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e~~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~ 176 (621)
T 2vgl_A 109 IRL-----INNAIKNDLASRNPTFMGLALHCIANVG--SREMAE-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLY 176 (621)
T ss_dssp HHH-----HHHHHHHHHHSCCHHHHHHHHHHHHHHC--CHHHHH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHhcCCCCHHHHHHHHHHhhccC--CHHHHH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 322 3577888888999999999999999995 233222 24667777763 4678899999999999999
Q ss_pred cCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC-------------
Q 043116 185 RGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR------------- 251 (482)
Q Consensus 185 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~------------- 251 (482)
...|.... ..+.++.+..++.+.++.++..++.++..++..++......+ ..++..|..++..+
T Consensus 177 ~~~p~~~~--~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~~~~~~~~~~~ 253 (621)
T 2vgl_A 177 RTSPDLVP--MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSV-SLAVSRLSRIVTSASTDLQDYTYYFVP 253 (621)
T ss_dssp HHCGGGCC--CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHH-HHHHHHHHHHHHCCSSSCSTTEETTEE
T ss_pred HhChhhcC--chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHhCCCCCccchhhcCCC
Confidence 86542221 137888999999999999999999999999876553211111 12233333443221
Q ss_pred ChhhHHHHHHHHhHhhcCC-hhhHHHHHhcCchHHHHHHhcCCC--------ch--hHHHHHHHHHHHHhcCCHHHHHHH
Q 043116 252 SRLVLTAALRTIGNIVTGD-DFQTQCIINCGALRYLLGLLIHNH--------NK--SIKKEVCWIISNITAGNREQIQAV 320 (482)
Q Consensus 252 ~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~i~~L~~ll~~~~--------~~--~v~~~a~~~L~nl~~~~~~~~~~l 320 (482)
++-.+...+..++.++... +.....+.+ .++.++..+.... +. .|..+++.++..+. ..++...
T Consensus 254 ~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~-~~~~~~~-- 328 (621)
T 2vgl_A 254 APWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD-SEPNLLV-- 328 (621)
T ss_dssp SHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC-CCHHHHH--
T ss_pred CchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC-CcHHHHH--
Confidence 5678888999999888643 343333332 3444443332111 22 68888888888875 3344332
Q ss_pred HHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCC-CCCHHHHHHHHHHHHHHHH
Q 043116 321 IDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP-CPDPQIVTVCLIGLENILK 396 (482)
Q Consensus 321 ~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~l~~L~~l~~ 396 (482)
.++..|..++.+.++++|..++.+|..++...... .. + ......++..+. ++|+.++..+++.|..+..
T Consensus 329 ---~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~--~~-~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~ 398 (621)
T 2vgl_A 329 ---RACNQLGQFLQHRETNLRYLALESMCTLASSEFSH--EA-V-KTHIETVINALKTERDVSVRQRAVDLLYAMCD 398 (621)
T ss_dssp ---HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH--HH-H-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH--HH-H-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC
Confidence 25667888888889999999999999998753211 11 2 246778888888 8999999999999888863
No 65
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.20 E-value=7.3e-09 Score=82.33 Aligned_cols=218 Identities=15% Similarity=0.131 Sum_probs=177.5
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCC
Q 043116 110 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQ 189 (482)
Q Consensus 110 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~ 189 (482)
.+..++..++.+|.+.-..++.+|+..+.+++...++..+- .+..|+.++..+...+..+....++..++...
T Consensus 29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~-- 101 (253)
T 2db0_A 29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK-- 101 (253)
T ss_dssp HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC--
T ss_pred hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhC--
Confidence 34457889999999988999999999999999888876544 35578888877777888888888999888764
Q ss_pred CChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC
Q 043116 190 PPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTG 269 (482)
Q Consensus 190 ~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 269 (482)
.....+++|.+..-..-.++.++....++|..++..++.... +++.-+..++++++..-+..|+..++.+...
T Consensus 102 --Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen 174 (253)
T 2db0_A 102 --PELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGEN 174 (253)
T ss_dssp --HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT
T ss_pred --HHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhcc
Confidence 355678888888888889999999999999999988776544 4567889999999988899999999988776
Q ss_pred ChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHH
Q 043116 270 DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVIS 349 (482)
Q Consensus 270 ~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~ 349 (482)
...... -.+|.|..+|.+. +.-||..|+.+|.+++..++..+.. +..-++-+++.+..++..+..+|+
T Consensus 175 ~~~yv~-----PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~S~lv~~~V~egL~ 242 (253)
T 2db0_A 175 SFKYVN-----PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDTSSLVNKTVKEGIS 242 (253)
T ss_dssp THHHHG-----GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHH
T ss_pred CccccC-----cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHH
Confidence 555433 4789999999999 9999999999999999988874432 223345556778889999999998
Q ss_pred Hhhc
Q 043116 350 NATS 353 (482)
Q Consensus 350 ~l~~ 353 (482)
.++.
T Consensus 243 rl~l 246 (253)
T 2db0_A 243 RLLL 246 (253)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8865
No 66
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.14 E-value=2.9e-09 Score=108.60 Aligned_cols=218 Identities=16% Similarity=0.110 Sum_probs=157.2
Q ss_pred HhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCC-C
Q 043116 67 IQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFV-KLLASPSDDVREQAVWALGNVAGD-S 144 (482)
Q Consensus 67 ~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~ll~~~~~~~~~~a~~~L~~l~~~-~ 144 (482)
.+..++| +++.|++++ ++.|..|+++|++++. ++..+..+...|++..++ .++.+++.++|..|+++|.||+.+ .
T Consensus 32 ~~~~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g 108 (684)
T 4gmo_A 32 REDKILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE 108 (684)
T ss_dssp HHHTTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC
T ss_pred chhhHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence 3445555 557789999 8999999999999997 789999999999887765 578899999999999999999943 4
Q ss_pred hhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHh
Q 043116 145 SRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYL 224 (482)
Q Consensus 145 ~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l 224 (482)
+.....+...|++++|...+.... ..+....... ..........+ .++...++.+|.++
T Consensus 109 ~d~~~~l~~~~il~~L~~~l~~~~---------~~~~~~~~~~-~~~~~~~~~~~-----------~~~~~~~l~lL~~L 167 (684)
T 4gmo_A 109 ADFCVHLYRLDVLTAIEHAAKAVL---------ETLTTSEPPF-SKLLKAQQRLV-----------WDITGSLLVLIGLL 167 (684)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHH---------HHHHCBTTBG-GGSCHHHHHHH-----------HHHHHHHHHHHHHH
T ss_pred chHHHHHHHcChHHHHHHHHHhhH---------HHHhhhcccc-ccccHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 667788889999999999983211 1111111110 00000001111 12445677788888
Q ss_pred ccCCcHHHHHHHHhCcHHHHHHhhCCC---ChhhHHHHHHHHhHhhcCChhhHHHHHhcCch---HHHHHHhcCCCchhH
Q 043116 225 ADGTNDKIQAVIEAGVCPRLVKLLGHR---SRLVLTAALRTIGNIVTGDDFQTQCIINCGAL---RYLLGLLIHNHNKSI 298 (482)
Q Consensus 225 ~~~~~~~~~~~~~~~~l~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i---~~L~~ll~~~~~~~v 298 (482)
+..+++....+...+.++.++..|.+. ..+++..|+.+|.+++.+++...+.+.+.+.. ..+..+..+. ...
T Consensus 168 ~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~--~~~ 245 (684)
T 4gmo_A 168 ALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGT--DPR 245 (684)
T ss_dssp HHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSS--CTT
T ss_pred HhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCC--cHH
Confidence 887777777788888899999888442 35799999999999999999888888877643 3333333333 346
Q ss_pred HHHHHHHHHHHh
Q 043116 299 KKEVCWIISNIT 310 (482)
Q Consensus 299 ~~~a~~~L~nl~ 310 (482)
+..+++++.|+.
T Consensus 246 ~~la~giL~Ni~ 257 (684)
T 4gmo_A 246 AVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhHh
Confidence 788999999985
No 67
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.09 E-value=1.3e-08 Score=93.39 Aligned_cols=276 Identities=12% Similarity=0.054 Sum_probs=165.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHH
Q 043116 29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKV 108 (482)
Q Consensus 29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 108 (482)
.+.++++++++|..++......+..++... .+.. =+.+.|.+=+++++ +-+|-.|+++|+++.. ++..+
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e~i------Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~~- 138 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-EDVI------IVTSSLTKDMTGKE-DSYRGPAVRALCQITD--STMLQ- 138 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SCGG------GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTHH-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHHH------HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHHH-
Confidence 455677888999999999988888888763 3322 14677888899999 9999999999999976 44333
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCC
Q 043116 109 AIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP 188 (482)
Q Consensus 109 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~ 188 (482)
.+.+.+.+.+.+.++.+|..|+.+..++....|+.. .+++..+-.++ .+.++.++..|+.++..+...+
T Consensus 139 ----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d- 207 (355)
T 3tjz_B 139 ----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND- 207 (355)
T ss_dssp ----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC-
T ss_pred ----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc-
Confidence 245778889999999999999999999997776642 25788888888 6778888889999999998753
Q ss_pred CCChhhhhhHHHHHHHHhccC---ChhHHHHHHHHHHHhccCC-cHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHh
Q 043116 189 QPPFNQIRPALRVLAQLIRSN---DEKVLTDACRALAYLADGT-NDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIG 264 (482)
Q Consensus 189 ~~~~~~~~~~~~~L~~ll~~~---~~~~~~~~l~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 264 (482)
...+..++.-+... ++-.+...++.+..+...+ +. ....+++.+..+|++.++.|..+|++++.
T Consensus 208 -------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~ 275 (355)
T 3tjz_B 208 -------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAIV 275 (355)
T ss_dssp -------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHHT
T ss_pred -------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 22445555555432 4656666667666666543 21 22356788888999999999999999999
Q ss_pred HhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHH
Q 043116 265 NIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEA 344 (482)
Q Consensus 265 ~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a 344 (482)
.+....... . ..++..+..++.++ ++.+|..|...|..+....|..++. .-..+.+++.++|..+...|
T Consensus 276 ~l~~~~~~~----~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~A 344 (355)
T 3tjz_B 276 NLPGCSAKE----L-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATLA 344 (355)
T ss_dssp C----------------CCCTHHHHHHSS-SSSSHHHHHHCC--------------------------------------
T ss_pred hccCCCHHH----H-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHHH
Confidence 886522221 1 23456677788888 8999999999999998876665432 33455667777877776655
Q ss_pred HHHHH
Q 043116 345 AWVIS 349 (482)
Q Consensus 345 ~~aL~ 349 (482)
+.+|.
T Consensus 345 ittll 349 (355)
T 3tjz_B 345 ITTLL 349 (355)
T ss_dssp -----
T ss_pred HHHhh
Confidence 55543
No 68
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=99.05 E-value=1.9e-08 Score=83.76 Aligned_cols=226 Identities=18% Similarity=0.167 Sum_probs=171.1
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHH
Q 043116 196 RPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQ 275 (482)
Q Consensus 196 ~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 275 (482)
.+.+..+.++++..|+.++..++.+|..+...-+.......-..+++.++.++.+.++.+...|++||..+..+.+-...
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 56788899999999999999999999999976544444444457889999999999999999999999999987653333
Q ss_pred HHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCC
Q 043116 276 CIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGG 355 (482)
Q Consensus 276 ~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~ 355 (482)
.+. .+...+..++.++ ++-.+.+|+..++-+--.++. .+++..+..++.+.+.+++..++.++.+++...
T Consensus 112 ~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 112 TFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 222 3567889999987 999999999999988332211 136667778889999999999999999998754
Q ss_pred CHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhh-cCCC
Q 043116 356 THEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQ-SHDN 434 (482)
Q Consensus 356 ~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~~~ 434 (482)
.... .-.+++.-+-++++++|+.+++.++.++..++...-.. |..-.. .+......++. -...
T Consensus 182 ~D~~----i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~---------~~~~~~---~~~~~~v~~l~~~~~~ 245 (265)
T 3b2a_A 182 ADSG----HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLE---------NVKIEL---LKISRIVDGLVYREGA 245 (265)
T ss_dssp SSCC----CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCS---------CCHHHH---HHHHHHHHHGGGCSSC
T ss_pred CCHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccH---------hHHHHH---HHHHHHHHHHHHhcCC
Confidence 2111 12347777888999999999999999999998763221 111111 24456677777 5677
Q ss_pred HHHHHHHHHHHHH
Q 043116 435 NDIHEMSVKILET 447 (482)
Q Consensus 435 ~~v~~~a~~~l~~ 447 (482)
|.++.+|-.+-+.
T Consensus 246 ~~~~~ka~~v~~~ 258 (265)
T 3b2a_A 246 PIIRLKAKKVSDL 258 (265)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 8888888776554
No 69
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.02 E-value=7.1e-08 Score=98.41 Aligned_cols=273 Identities=15% Similarity=0.106 Sum_probs=191.7
Q ss_pred cHHHHHHHhc---CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC-------ChHHHHHHHHHHHH
Q 043116 28 ILPTMVAGVW---SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMRED-------YPQLQFEAARALTN 97 (482)
Q Consensus 28 ~i~~l~~~l~---s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~-------~~~v~~~a~~~L~~ 97 (482)
++..|-+.+. ++++.++..|+..|.-+..+... . .+..|...+.+++ .+.++..|+..|+-
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~----~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR----D-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH----H-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH----H-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4666666665 56788898999999888776421 1 3566666665443 25688889999998
Q ss_pred HhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHH
Q 043116 98 IASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTAT 177 (482)
Q Consensus 98 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~ 177 (482)
+..++... .+++.|..++.+.+..+++.|..+|+.+..+.... + ++..++..+..+.+..+++.++
T Consensus 464 a~~GS~~e-------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-~------ai~~LL~~~~e~~~e~vrR~aa 529 (963)
T 4ady_A 464 AAMGSANI-------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-E------AIHDMFTYSQETQHGNITRGLA 529 (963)
T ss_dssp HSTTCCCH-------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-H------HHHHHHHHHHHCSCHHHHHHHH
T ss_pred HhcCCCCH-------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-H------HHHHHHHHHhccCcHHHHHHHH
Confidence 76543211 24677888888777778888999999875333221 1 3456666665666778999999
Q ss_pred HHHHHhhcCCCCCChhhhhhHHHHHHHHhc-cCChhHHHHHHHHHHHhc--cCCcHHHHHHHHhCcHHHHHHh-hCCCCh
Q 043116 178 WTLSNFCRGKPQPPFNQIRPALRVLAQLIR-SNDEKVLTDACRALAYLA--DGTNDKIQAVIEAGVCPRLVKL-LGHRSR 253 (482)
Q Consensus 178 ~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~~~~~~l~~L~~l~--~~~~~~~~~~~~~~~l~~L~~l-l~~~~~ 253 (482)
..|..+.... ...++.++..|. +.++-++..++.+++.-. .++... ++.|+.. ..+.+.
T Consensus 530 lgLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a---------Iq~LL~~~~~d~~d 592 (963)
T 4ady_A 530 VGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA---------VKRLLHVAVSDSND 592 (963)
T ss_dssp HHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH---------HHHHHHHHHHCSCH
T ss_pred HHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH---------HHHHHHHhccCCcH
Confidence 9999887665 344556666655 567888888877776433 334322 3434443 456778
Q ss_pred hhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Q 043116 254 LVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLL 333 (482)
Q Consensus 254 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll 333 (482)
.+|..|+..|+.+..++++ .++.++.++.+..++.+|..|+++++.++.+++.. .+++.|..+.
T Consensus 593 ~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~ 656 (963)
T 4ady_A 593 DVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHc
Confidence 8999999999998876653 35566665554449999999999999999865431 2566777788
Q ss_pred hcCChhHHHHHHHHHHHhhcCCC
Q 043116 334 QDAEFGTKKEAAWVISNATSGGT 356 (482)
Q Consensus 334 ~~~~~~~~~~a~~aL~~l~~~~~ 356 (482)
.+.+..|+..|+.+|+.+....+
T Consensus 657 ~D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 657 KDPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp TCSSHHHHHHHHHHHHHHSTTCC
T ss_pred cCCCHHHHHHHHHHHHHHhcCCc
Confidence 89999999999999999987543
No 70
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.96 E-value=4.7e-07 Score=72.12 Aligned_cols=214 Identities=12% Similarity=0.179 Sum_probs=165.4
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcCChhhH
Q 043116 196 RPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLL-GHRSRLVLTAALRTIGNIVTGDDFQT 274 (482)
Q Consensus 196 ~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~ 274 (482)
..++..++.+|.+.-+.++.+++..+..++...++....+ +..|+.++ ++..-.......+++|.++...|+..
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v 105 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV 105 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence 5788889999999889999999999999998887766543 34555555 45566677888999999998888766
Q ss_pred HHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcC
Q 043116 275 QCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSG 354 (482)
Q Consensus 275 ~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~ 354 (482)
+ +.+|.+..-+.-+ ++++|....++|..++..+|.... +++..+..++.+++..-+..|+..+..+..+
T Consensus 106 ~-----~vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen 174 (253)
T 2db0_A 106 K-----SMIPVLFANYRIG-DEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGEN 174 (253)
T ss_dssp H-----HHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT
T ss_pred H-----hhHHHHHHHHhcC-CccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhcc
Confidence 6 5678888888889 999999999999999998888554 4566788889999988888888888887765
Q ss_pred CCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCC
Q 043116 355 GTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDN 434 (482)
Q Consensus 355 ~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~ 434 (482)
+ ... -.-.++.|..++.+.|.-|+..+.+.|.++....+.. +..+ .+++.+ +++.+
T Consensus 175 ~-~~y-----v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npkl------------Rkii-----~~kl~e-~~D~S 230 (253)
T 2db0_A 175 S-FKY-----VNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKL------------RKVV-----IKRLEE-LNDTS 230 (253)
T ss_dssp T-HHH-----HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHH------------HHHH-----HHHHHH-CCCSC
T ss_pred C-ccc-----cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHH------------HHHH-----HHHHHH-hcCcH
Confidence 2 332 2237999999999999999999999999999765552 3333 333443 45667
Q ss_pred HHHHHHHHHHHHHhc
Q 043116 435 NDIHEMSVKILETYW 449 (482)
Q Consensus 435 ~~v~~~a~~~l~~~~ 449 (482)
..++.....-+.++.
T Consensus 231 ~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 231 SLVNKTVKEGISRLL 245 (253)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777666665543
No 71
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.95 E-value=4.6e-09 Score=107.12 Aligned_cols=196 Identities=14% Similarity=0.048 Sum_probs=149.0
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHH-HHhhCCCChhhHHHHHHHHhHhhcC-ChhhHH
Q 043116 198 ALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRL-VKLLGHRSRLVLTAALRTIGNIVTG-DDFQTQ 275 (482)
Q Consensus 198 ~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L-~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~ 275 (482)
++| +++.|++++++.+..++++|++++. ++...+.+...+++..+ ..+|.+++.+|+..|+++|+||+.. .++.+.
T Consensus 36 i~P-ll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 36 ILP-VLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp THH-HHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHH-HHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 444 5567899999999999999999996 55566677777887765 5678999999999999999999975 467778
Q ss_pred HHHhcCchHHHHHHhcCCC-------------c-------hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc
Q 043116 276 CIINCGALRYLLGLLIHNH-------------N-------KSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQD 335 (482)
Q Consensus 276 ~l~~~~~i~~L~~ll~~~~-------------~-------~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~ 335 (482)
.+++.|+++.|..+++... . ..+...++.+|.+++.++.+....+...+.++.|+..+.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 8999999999999885420 0 1234457788999988888888888888999999998864
Q ss_pred C---ChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCCh---HHHHhcCCCCCHHHHHHHHHHHHHHHHh
Q 043116 336 A---EFGTKKEAAWVISNATSGGTHEQIKHLVREGCV---KPLCDLLPCPDPQIVTVCLIGLENILKV 397 (482)
Q Consensus 336 ~---~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l---~~L~~ll~~~~~~v~~~~l~~L~~l~~~ 397 (482)
. ..+++..|+.+|..++.. +++....+.+.+.. ..+..+.++.+ ..+..+...|.+++..
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~d-n~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~~~ 259 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSED-NLKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLHNVFTS 259 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhcc-CHHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHHhHhhh
Confidence 2 467999999999999985 67777777776643 23333333333 3455677888888653
No 72
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.90 E-value=1e-07 Score=79.43 Aligned_cols=208 Identities=15% Similarity=0.135 Sum_probs=161.8
Q ss_pred hhhhhhhcccchhchhhhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCCh
Q 043116 6 LQSQQFQISAPALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYP 85 (482)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~ 85 (482)
+..+...|.--+..+......+.+..|+.+++.+|+.++..++.+|.++.... +...+...-..+++.++.++.+.+ .
T Consensus 12 lre~L~sWkiK~a~ela~~~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~d-E 89 (265)
T 3b2a_A 12 LRELVLSWQILDAVSLALEDKRALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQEN-E 89 (265)
T ss_dssp HHHHHHTTCHHHHHHHHHHCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTT-H
T ss_pred HHHHHHHhhHHHHHHHHHhchhHHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-h
Confidence 34444555544444555555567899999999999999999999999999875 333444555568999999999999 8
Q ss_pred HHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHc
Q 043116 86 QLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELN 165 (482)
Q Consensus 86 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~ 165 (482)
.+...|++||..+..+.|-..+.+.. ++.+|..++.++++-++..++..++.+---.+ .+. ++..+.+++
T Consensus 90 kval~A~r~L~~LLe~vpL~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~-~~~------V~~~l~sLl- 159 (265)
T 3b2a_A 90 KVTIKALRALGYLVKDVPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED-SKL------VRTYINELV- 159 (265)
T ss_dssp HHHHHHHHHHHHHHTTCCBCHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-CHH------HHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-hHH------HHHHHHHHH-
Confidence 99999999999999866544444443 56889999999999999999999999942221 111 355778888
Q ss_pred chhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccC
Q 043116 166 EHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADG 227 (482)
Q Consensus 166 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~ 227 (482)
.+.+..++..+..++.+++.... +......++.-+..+++++|+.++..++.++-.+...
T Consensus 160 ~Skd~~vK~agl~~L~eia~~S~--D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 160 VSPDLYTKVAGFCLFLNMLNSSA--DSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp TCSSHHHHHHHHHHHHHHGGGCS--SCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred hCCChhHHHHHHHHHHHhhcccC--CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 88999999999999999998752 2334456666778899999999999999999998865
No 73
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.88 E-value=8.5e-08 Score=87.97 Aligned_cols=315 Identities=10% Similarity=0.093 Sum_probs=177.4
Q ss_pred cHHHHHHHhcCC--CHHHHHHH-HHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChH
Q 043116 28 ILPTMVAGVWSD--DNKVQLEA-TTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSE 104 (482)
Q Consensus 28 ~i~~l~~~l~s~--~~~~~~~a-~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~ 104 (482)
.++. .+.++.. ++.-...+ .+.|.-+..++ .-...+ ...++..+++++++++ ..++.-.--.+.+++...++
T Consensus 27 v~qe-~r~fn~~~~~~~kc~~~l~kll~l~~~G~-~f~~~e--~t~lf~~v~kl~~s~d-~~lKrLvYLyl~~~~~~~~e 101 (355)
T 3tjz_B 27 VLQE-ARVFNETPINPRKCAHILTKILYLINQGE-HLGTTE--ATEAFFAMTKLFQSND-PTLRRMCYLTIKEMSCIAED 101 (355)
T ss_dssp HHHH-GGGTTSSSCCHHHHHHHHHHHHHHHHHTC-CCCHHH--HHHHHHHHHGGGGCCC-HHHHHHHHHHHHHHTTTSSC
T ss_pred HHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHCCC-CCchhH--HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCCCHHH
Confidence 4444 3455533 44433333 34444455443 211111 1235667789999999 89999888888888774222
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhh
Q 043116 105 NTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFC 184 (482)
Q Consensus 105 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~ 184 (482)
. + =+++.|.+=++++++-+|-.|+++++++... +.-+. +.+.+-+.+ .+.++.+++.|+.+...|.
T Consensus 102 ~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~~-----l~~~lk~~L-~d~~pyVRk~A~l~~~kL~ 167 (355)
T 3tjz_B 102 V---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQA-----IERYMKQAI-VDKVPSVSSSALVSSLHLL 167 (355)
T ss_dssp G---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHHH-----HHHHHHHHH-TCSSHHHHHHHHHHHHHHT
T ss_pred H---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHHH-----HHHHHHHHc-CCCCHHHHHHHHHHHHHHh
Confidence 1 1 2468888889999999999999999999633 22222 344555566 7788999999999999998
Q ss_pred cCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC---ChhhHHHHHH
Q 043116 185 RGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR---SRLVLTAALR 261 (482)
Q Consensus 185 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~---~~~v~~~a~~ 261 (482)
...| ....+.++.+.+++.+.++.++.+++.++..+...+... +..++..+... ++-.+...++
T Consensus 168 ~~~p----e~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a---------~~kLv~~l~~~~l~~~~~q~~llr 234 (355)
T 3tjz_B 168 KCSF----DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLA---------VSKMISKFTRHGLKSPFAYCMMIR 234 (355)
T ss_dssp TTCH----HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHH---------HHHHHHHHHSSCCSCHHHHHHHHH
T ss_pred ccCH----HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHH---------HHHHHHHHhcCCCcChHHHHHHHH
Confidence 7653 344678888999999999999999999999998765322 23344444332 4555555666
Q ss_pred HHhHhhcCC-hhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhH
Q 043116 262 TIGNIVTGD-DFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGT 340 (482)
Q Consensus 262 ~L~~l~~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~ 340 (482)
.+..++..+ +.. ...+++.+..+|++. ++.|..+|+.++..+...... .. ..++..+..++.+.++.+
T Consensus 235 ~l~~~~~~d~~~~-----~~~~~~~l~~~L~~~-~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~ni 303 (355)
T 3tjz_B 235 VASRQLEDEDGSR-----DSPLFDFIESCLRNK-HEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPKAAL 303 (355)
T ss_dssp HHTCC----------------------CCCCCS-SHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSS
T ss_pred HHHHhccccchhh-----HHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCCchH
Confidence 666665544 222 235677888889988 999999999999998542222 11 235666777788899999
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHH
Q 043116 341 KKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGL 391 (482)
Q Consensus 341 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L 391 (482)
|-.|+..|..++.. .|.... .+-..+.++++++|..+...|+..|
T Consensus 304 ryvaLr~L~~l~~~-~P~~v~-----~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 304 RYAAVRTLNKVAMK-HPSAVT-----ACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp HHHHHHCC-------------------------------------------
T ss_pred HHHHHHHHHHHHHH-CcHHHH-----HHHHHHHHHccCCcHhHHHHHHHHh
Confidence 99999999998874 343322 2566788899999988877665443
No 74
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.85 E-value=1.3e-06 Score=89.25 Aligned_cols=270 Identities=15% Similarity=0.144 Sum_probs=184.6
Q ss_pred CHHHHHHhhc---CCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCC--------HHHHHHHHHHHHH
Q 043116 71 VVPRFVEFLM---REDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPS--------DDVREQAVWALGN 139 (482)
Q Consensus 71 ~~~~L~~ll~---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--------~~~~~~a~~~L~~ 139 (482)
++..|-..|. +++ +.++..|+..|+-+..+... .++..|...+.+.+ +.++..|+..|+-
T Consensus 393 gl~~L~~yL~~~~s~~-~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 393 GKKVMAPYLPGSRASS-RFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHHHHTTTSTTSCCSC-HHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCc-HHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4556666665 445 78999999999999775432 14566777776544 6788889999998
Q ss_pred hhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHh-ccCChhHHHHHH
Q 043116 140 VAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLI-RSNDEKVLTDAC 218 (482)
Q Consensus 140 l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~~~~~~l 218 (482)
+..+... +. ++..|...+. +.+..+...++.+|..+..+. .. ..++..|++.+ .+.+..++..+.
T Consensus 464 a~~GS~~--ee-----v~e~L~~~L~-dd~~~~~~~AalALGli~vGT--gn----~~ai~~LL~~~~e~~~e~vrR~aa 529 (963)
T 4ady_A 464 AAMGSAN--IE-----VYEALKEVLY-NDSATSGEAAALGMGLCMLGT--GK----PEAIHDMFTYSQETQHGNITRGLA 529 (963)
T ss_dssp HSTTCCC--HH-----HHHHHHHHHH-TCCHHHHHHHHHHHHHHHTTC--CC----HHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HhcCCCC--HH-----HHHHHHHHHh-cCCHHHHHHHHHHHhhhhccc--CC----HHHHHHHHHHHhccCcHHHHHHHH
Confidence 7644321 11 3556777773 333345556777777665442 11 23445555543 456788999999
Q ss_pred HHHHHhccCCcHHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchh
Q 043116 219 RALAYLADGTNDKIQAVIEAGVCPRLVKLL-GHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKS 297 (482)
Q Consensus 219 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~ 297 (482)
.+|+.+..+.++.. +.++..| .+.++.+|..++.+++--..+.... ..++.|+..+.+..+..
T Consensus 530 lgLGll~~g~~e~~---------~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~ 593 (963)
T 4ady_A 530 VGLALINYGRQELA---------DDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDD 593 (963)
T ss_dssp HHHHHHTTTCGGGG---------HHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHH
T ss_pred HHHHhhhCCChHHH---------HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHH
Confidence 99998887666543 4555555 3577888988888887544433322 13555666655444788
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH-hcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcC
Q 043116 298 IKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLL-QDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLL 376 (482)
Q Consensus 298 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll 376 (482)
+|..|+.+|+.+..+.++ .++.++..+ ++.++.+|..++.||+.+....... .+++.|..+.
T Consensus 594 VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~--------~aid~L~~L~ 656 (963)
T 4ady_A 594 VRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--------SAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH--------HHHHHHHHHc
Confidence 999999999999876653 455566544 5789999999999999997642211 1577788888
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 043116 377 PCPDPQIVTVCLIGLENILK 396 (482)
Q Consensus 377 ~~~~~~v~~~~l~~L~~l~~ 396 (482)
++++..|+..|+.+|..+..
T Consensus 657 ~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 657 KDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp TCSSHHHHHHHHHHHHHHST
T ss_pred cCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999998874
No 75
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.80 E-value=9.2e-08 Score=84.41 Aligned_cols=184 Identities=16% Similarity=0.243 Sum_probs=141.7
Q ss_pred HHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc-cCChhHHHHHHHHHHHhccCCcHHHHHHHH
Q 043116 159 PLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR-SNDEKVLTDACRALAYLADGTNDKIQAVIE 237 (482)
Q Consensus 159 ~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~ 237 (482)
.+...+ .+.+...+..++..|..+....+.........+++.+...+. +.+..++..++.++..++..-...... .-
T Consensus 19 ~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~~ 96 (242)
T 2qk2_A 19 DFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-YA 96 (242)
T ss_dssp THHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-HH
T ss_pred HHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-HH
Confidence 466666 677888899999999999876332222234678999999995 899999999999999999542222211 22
Q ss_pred hCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHH
Q 043116 238 AGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAG-NREQ 316 (482)
Q Consensus 238 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~ 316 (482)
..+++.++..+.++++.+|..+..+|..++....- . .+++.+...+++. ++.+|..++..|..+... .++.
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~--~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL--E-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH--H-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH--H-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCC
Confidence 35789999999999999999999999999874331 1 3677889999988 999999999999997653 3331
Q ss_pred -HHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 043116 317 -IQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATS 353 (482)
Q Consensus 317 -~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~ 353 (482)
....+. .+++.+..++.+.++++|..|..+++.+..
T Consensus 169 ~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 169 LNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 222333 489999999999999999999999999976
No 76
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.76 E-value=5.1e-06 Score=77.98 Aligned_cols=321 Identities=13% Similarity=0.125 Sum_probs=194.2
Q ss_pred CChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCh---hhHHHHHHhCCh-HHHHHHHcchhhhhHHHHHHHHHHHhhcCC
Q 043116 113 GAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSS---RCRDFVLSQGAL-IPLLAELNEHAKLSMLRTATWTLSNFCRGK 187 (482)
Q Consensus 113 g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~~i-~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~ 187 (482)
.+...++++|. ..+.++....+..+.-+...++ .....+.+..-. ..+.......++.-....++.++..++...
T Consensus 77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~ 156 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG 156 (480)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence 46788888887 5678888888888888887666 333343333222 223333323333334445555555555433
Q ss_pred CCCChhhhhhHHH--HHHHHhccC-ChhHHHHHHHHHHHhccCCcHHHHHHHHh--CcHHHHHHhhC----C--------
Q 043116 188 PQPPFNQIRPALR--VLAQLIRSN-DEKVLTDACRALAYLADGTNDKIQAVIEA--GVCPRLVKLLG----H-------- 250 (482)
Q Consensus 188 ~~~~~~~~~~~~~--~L~~ll~~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~--~~l~~L~~ll~----~-------- 250 (482)
+. .......++. -++..+... +.+.+..++.+|..+...+. .+..+.+. ..++.++.+++ +
T Consensus 157 ~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~-~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~ 234 (480)
T 1ho8_A 157 LH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPE-YRDVIWLHEKKFMPTLFKILQRATDSQLATRIVA 234 (480)
T ss_dssp TC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH-HHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred Cc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchh-HHHHHHHcccchhHHHHHHHHHhhcccccccccc
Confidence 22 3333344444 344555542 34556678888888886543 44445543 24555544332 1
Q ss_pred ---C--ChhhHHHHHHHHhHhhcCChhhHHHHHhcCch--HHHHHHhcCCCchhHHHHHHHHHHHHhcCCH----HHHHH
Q 043116 251 ---R--SRLVLTAALRTIGNIVTGDDFQTQCIINCGAL--RYLLGLLIHNHNKSIKKEVCWIISNITAGNR----EQIQA 319 (482)
Q Consensus 251 ---~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i--~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~----~~~~~ 319 (482)
+ ...++..++.|++-++. ++.....+...++. +.|+.+++.....++-+-+..++.|+....+ .....
T Consensus 235 ~~~~~~~~Ql~Y~~ll~iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~ 313 (480)
T 1ho8_A 235 TNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQ 313 (480)
T ss_dssp ----CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred ccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHH
Confidence 1 24568889999999887 45556666666644 6677888877688899999999999998542 22332
Q ss_pred HH-HcCChHHHHHHHhc---CChhHHHHHHHHHHHhhc---------------------CC----CHHH----HHHHHHc
Q 043116 320 VI-DAGLIGPIVNLLQD---AEFGTKKEAAWVISNATS---------------------GG----THEQ----IKHLVRE 366 (482)
Q Consensus 320 l~-~~~~i~~L~~ll~~---~~~~~~~~a~~aL~~l~~---------------------~~----~~~~----~~~l~~~ 366 (482)
++ ..++ +.+++.|.. .|+++....-.....+-. .+ ++.+ ...+.++
T Consensus 314 ~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~ 392 (480)
T 1ho8_A 314 LLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKD 392 (480)
T ss_dssp HHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSG
T ss_pred HHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhc
Confidence 33 3333 556666663 466554433222221111 00 1111 1112211
Q ss_pred --CChHHHHhcCCC----------CCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCC
Q 043116 367 --GCVKPLCDLLPC----------PDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDN 434 (482)
Q Consensus 367 --~~l~~L~~ll~~----------~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~ 434 (482)
.++..|.+++++ .|+.+...|+.=++.+++..+. .+..+.+.|+-+++-+|+.|+|
T Consensus 393 ~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~------------gr~i~~~lg~K~~VM~Lm~h~d 460 (480)
T 1ho8_A 393 NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE------------SIDVLDKTGGKADIMELLNHSD 460 (480)
T ss_dssp GGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT------------HHHHHHHHSHHHHHHHHTSCSS
T ss_pred chHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcc------------hhHHHHHcCcHHHHHHHhcCCC
Confidence 246777777763 3566777778888888876555 3778889999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 043116 435 NDIHEMSVKILETYW 449 (482)
Q Consensus 435 ~~v~~~a~~~l~~~~ 449 (482)
++|+..|...++++.
T Consensus 461 ~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 461 SRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988764
No 77
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.73 E-value=1.4e-07 Score=83.27 Aligned_cols=187 Identities=8% Similarity=0.067 Sum_probs=138.8
Q ss_pred HHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhc-CCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 043116 242 PRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLI-HNHNKSIKKEVCWIISNITAGNREQIQAV 320 (482)
Q Consensus 242 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 320 (482)
+.+...+.+.++..|..++..|..++.+.+.....-. ..+++.+...+. +. +..++..|+.+++.++..-...+...
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3477788899999999999999999875332110001 145777888885 77 99999999999999996322222333
Q ss_pred HHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchh
Q 043116 321 IDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEA 400 (482)
Q Consensus 321 ~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~ 400 (482)
.. .+++.++..+.+.+..+|..+..+|..++...+.+ .+++.+...++++++.++..++..|..++.....
T Consensus 96 ~~-~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~--------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 96 AS-ACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLE--------AQQESIVESLSNKNPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp HH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHH--------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred HH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 32 48999999999999999999999999998764422 2577888999999999999999999998765321
Q ss_pred ccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043116 401 EKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWC 450 (482)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 450 (482)
... +...+ ...++.|..++.+.+++|+..|...+..+..
T Consensus 167 ~~~---------~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 167 TAL---------NKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GGC---------CHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCc---------cHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 110 12222 1347888999999999999999998877553
No 78
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.65 E-value=6.2e-07 Score=79.01 Aligned_cols=191 Identities=10% Similarity=0.086 Sum_probs=139.7
Q ss_pred HHHHcchhhhhHHHHHHHHHHH-hhcCCCCCC--hhhhhhHHHHHHHHh-ccCChhHHHHHHHHHHHhccCCc-HHHHHH
Q 043116 161 LAELNEHAKLSMLRTATWTLSN-FCRGKPQPP--FNQIRPALRVLAQLI-RSNDEKVLTDACRALAYLADGTN-DKIQAV 235 (482)
Q Consensus 161 ~~~l~~~~~~~~~~~a~~~L~~-L~~~~~~~~--~~~~~~~~~~L~~ll-~~~~~~~~~~~l~~L~~l~~~~~-~~~~~~ 235 (482)
...+ .+.+..-+..++..|.. ++.+.+... ......++..+...+ .+.+..++..++.+++.++.+-. .....-
T Consensus 22 ~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 22 QERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 3444 56677888889999999 876543322 223357788999999 78899999999999999985322 111101
Q ss_pred HHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH-
Q 043116 236 IEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNR- 314 (482)
Q Consensus 236 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~- 314 (482)
+...+++.++..+.+..+.++..+..++..++...+.....-.-..+++.+...+++. ++.+|..++.+|..++...+
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCC
Confidence 1123688999999999999999999999888874421110000013677899999999 99999999999999987333
Q ss_pred --HHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 043116 315 --EQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATS 353 (482)
Q Consensus 315 --~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~ 353 (482)
......+...++|.+..++.+.++++|..|..+++.+..
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 444445534799999999999999999999999998864
No 79
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.64 E-value=2.5e-07 Score=81.57 Aligned_cols=190 Identities=12% Similarity=0.184 Sum_probs=138.4
Q ss_pred HHHhhcCCCChHHHHHHHHHHHH-HhCCChHhHHHHHh-CCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCC--hhhH-
Q 043116 75 FVEFLMREDYPQLQFEAARALTN-IASGTSENTKVAID-HGAVPIFVKLL-ASPSDDVREQAVWALGNVAGDS--SRCR- 148 (482)
Q Consensus 75 L~~ll~~~~~~~v~~~a~~~L~~-l~~~~~~~~~~~~~-~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~--~~~~- 148 (482)
+.+.+++.+ ..-|..|+..|.. ++.+.++....-.+ ..++..|.+.+ .+.+..++..|+.+++.++.+- +...
T Consensus 21 f~~~l~s~~-w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERITSSK-WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHHTCSS-HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHhhcCC-HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 566778888 6889999999999 87543332100000 13467778888 6889999999999999998422 1222
Q ss_pred HHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCCh-hhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccC
Q 043116 149 DFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPF-NQIRPALRVLAQLIRSNDEKVLTDACRALAYLADG 227 (482)
Q Consensus 149 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~ 227 (482)
..... +++.++..+ .+....++..+..++..++...+.... .....+++.+...+++.++.++..++.+|..+...
T Consensus 100 ~y~~~--llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 100 DYVSL--VFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHHHH--HHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 22222 577888888 555677888888889888875422221 12568999999999999999999999999998855
Q ss_pred Cc---HHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 043116 228 TN---DKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVT 268 (482)
Q Consensus 228 ~~---~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 268 (482)
.. ......+...+++.+..++.+.++.+|..|..+++.++.
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 44 233233325789999999999999999999999999875
No 80
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.63 E-value=3.8e-05 Score=72.15 Aligned_cols=325 Identities=11% Similarity=0.074 Sum_probs=195.9
Q ss_pred hcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCCh---HhHHHHHhCCCh-HHHHH-hhCCCCHHHHHHHHHHHHHhhC
Q 043116 68 QSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTS---ENTKVAIDHGAV-PIFVK-LLASPSDDVREQAVWALGNVAG 142 (482)
Q Consensus 68 ~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~g~i-~~L~~-ll~~~~~~~~~~a~~~L~~l~~ 142 (482)
+...+..++++|+.....++....+..+..+...++ .....+.+..-. ..+.. ++..++.-....+..++..++.
T Consensus 75 ~~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~ 154 (480)
T 1ho8_A 75 NGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQ 154 (480)
T ss_dssp SSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTS
T ss_pred CchHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence 345678899999876668999999999999988776 444444444322 22333 3444444445556656555543
Q ss_pred CChhhHHHHHHhCChH--HHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhh--hhHHHHHHHHhcc----------
Q 043116 143 DSSRCRDFVLSQGALI--PLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQI--RPALRVLAQLIRS---------- 208 (482)
Q Consensus 143 ~~~~~~~~~~~~~~i~--~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~--~~~~~~L~~ll~~---------- 208 (482)
..+...+.+. ..+. -++..+.+..+.+.+..++.+|..|.+....+..... ...+|.++.+++.
T Consensus 155 ~~~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~ 232 (480)
T 1ho8_A 155 NGLHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRI 232 (480)
T ss_dssp TTTCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred cCCccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhcccccccc
Confidence 3322111111 1122 3455553322234455688888888876533332221 2346666544331
Q ss_pred -----C--ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcH--HHHHHhhCC-CChhhHHHHHHHHhHhhcCCh----hhH
Q 043116 209 -----N--DEKVLTDACRALAYLADGTNDKIQAVIEAGVC--PRLVKLLGH-RSRLVLTAALRTIGNIVTGDD----FQT 274 (482)
Q Consensus 209 -----~--~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l--~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~----~~~ 274 (482)
+ ..+++..++.|+.-++-. ++..+.+...++. ..++..++. ..+++.+-++.++.|+....+ ...
T Consensus 233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~ 311 (480)
T 1ho8_A 233 VATNSNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVI 311 (480)
T ss_dssp ------CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred ccccCCCccHHHHHHHHHHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHH
Confidence 1 245688899999988854 3455555555543 456666644 568899999999999998652 222
Q ss_pred H-HHHhcCchHHHHHHhcCCC--chhHHHHHHHHHHHHhc-----C----------------CHHHH-HHHHH-------
Q 043116 275 Q-CIINCGALRYLLGLLIHNH--NKSIKKEVCWIISNITA-----G----------------NREQI-QAVID------- 322 (482)
Q Consensus 275 ~-~l~~~~~i~~L~~ll~~~~--~~~v~~~a~~~L~nl~~-----~----------------~~~~~-~~l~~------- 322 (482)
. .++..++ ..+++.|.... |+++....-+..-.+-. . +|-+. ..++.
T Consensus 312 ~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~ 390 (480)
T 1ho8_A 312 KQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFK 390 (480)
T ss_dssp HHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGS
T ss_pred HHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHH
Confidence 2 2333445 44555554421 55555443332222211 0 11111 12221
Q ss_pred ---cCChHHHHHHHhc----------CChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHH
Q 043116 323 ---AGLIGPIVNLLQD----------AEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLI 389 (482)
Q Consensus 323 ---~~~i~~L~~ll~~----------~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~ 389 (482)
..++..|++++.+ .|+.+..-||.=|+.++.. .|.....+.+.|+=+.+++++.++|++|+..|+.
T Consensus 391 e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~-~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~ 469 (480)
T 1ho8_A 391 KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVEL-LPESIDVLDKTGGKADIMELLNHSDSRVKYEALK 469 (480)
T ss_dssp SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHH-CTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHH-CcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHH
Confidence 1247889999973 3677888899999999986 5566677777799999999999999999999999
Q ss_pred HHHHHHHh
Q 043116 390 GLENILKV 397 (482)
Q Consensus 390 ~L~~l~~~ 397 (482)
++.+++..
T Consensus 470 avQklm~~ 477 (480)
T 1ho8_A 470 ATQAIIGY 477 (480)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998853
No 81
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.53 E-value=6.2e-05 Score=80.23 Aligned_cols=336 Identities=11% Similarity=0.061 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhC-----CCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHH
Q 043116 86 QLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLA-----SPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPL 160 (482)
Q Consensus 86 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l 160 (482)
.++..++.++..++...++.-...+. .+++..+..+. ..++.++..++..+..++... ..+..+...+.++.+
T Consensus 261 ~vk~~~~~~l~~l~~~~~~~f~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~-~~~~~~~~~~~l~~l 338 (960)
T 1wa5_C 261 KVKSSIQELVQLYTTRYEDVFGPMIN-EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIP-KYFEIFNNESAMNNI 338 (960)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSH-HHHGGGCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcH-hHHHHHcCchHHHHH
Confidence 46778888888887644433222222 34555555553 346788889999999887432 222111100122223
Q ss_pred H-----HHHcc---h-------------------hhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc------
Q 043116 161 L-----AELNE---H-------------------AKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR------ 207 (482)
Q Consensus 161 ~-----~~l~~---~-------------------~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~------ 207 (482)
+ ..+.- + .....+..+..+|..++...+ ......+++.+.+.+.
T Consensus 339 i~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~---~~v~~~~l~~i~~~l~~~~~~~ 415 (960)
T 1wa5_C 339 TEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE---VLVTNIFLAHMKGFVDQYMSDP 415 (960)
T ss_dssp HHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc---hhHHHHHHHHHHHHHHHhccCc
Confidence 3 22210 0 011345566777777776532 2334455566666665
Q ss_pred cCChhHHHHHHHHHHHhccCCc--H----------HHHHHHHhCcHHHHHHhhCCC---ChhhHHHHHHHHhHhhcCChh
Q 043116 208 SNDEKVLTDACRALAYLADGTN--D----------KIQAVIEAGVCPRLVKLLGHR---SRLVLTAALRTIGNIVTGDDF 272 (482)
Q Consensus 208 ~~~~~~~~~~l~~L~~l~~~~~--~----------~~~~~~~~~~l~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~ 272 (482)
++++..++.++.+++.++.... . ....++ ...+++.+.++ ++.+|..|+++++.++..-..
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l----~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~ 491 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF----TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK 491 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH----HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHH----HHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH
Confidence 5678899999999999975311 0 111111 12344445566 788999999999999874321
Q ss_pred hHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-C----------HHHHHHHHHcCChHHHHHHHhcCC----
Q 043116 273 QTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAG-N----------REQIQAVIDAGLIGPIVNLLQDAE---- 337 (482)
Q Consensus 273 ~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~----------~~~~~~l~~~~~i~~L~~ll~~~~---- 337 (482)
. . -..+++.++..+.++ ++.|+..|++++.+++.. . .+.+...+. .+++.|+.++....
T Consensus 492 --~-~-l~~~l~~l~~~L~d~-~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~-~ll~~L~~ll~~~~~~~~ 565 (960)
T 1wa5_C 492 --A-Q-LIELMPILATFLQTD-EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE-ILLKNLIALILKHGSSPE 565 (960)
T ss_dssp --H-H-HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH-HHHHHHHHHHHTTCCCHH
T ss_pred --H-H-HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHH-HHHHHHHHHHHhccCCCC
Confidence 1 1 124678888888887 899999999999999863 1 222222222 35666777776541
Q ss_pred -hhHHHHHHHHHHHhhcCCCHH---HHHHHHHcCChHHHHhcCC-CCCHHHHHHHHHHHHHHHHhchhccccCCCCcccH
Q 043116 338 -FGTKKEAAWVISNATSGGTHE---QIKHLVREGCVKPLCDLLP-CPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQ 412 (482)
Q Consensus 338 -~~~~~~a~~aL~~l~~~~~~~---~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~ 412 (482)
......+..++..++...... ....+.. ..+..+....+ .+++.....+++++..++..... +.
T Consensus 566 ~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~-~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~----------~~ 634 (960)
T 1wa5_C 566 KLAENEFLMRSIFRVLQTSEDSIQPLFPQLLA-QFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQR----------QN 634 (960)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHH-HHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCG----------GG
T ss_pred cccccHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCc----------ch
Confidence 112345566665554321111 1122111 12222333333 34667777889999999876111 11
Q ss_pred HHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043116 413 YAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYW 449 (482)
Q Consensus 413 ~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 449 (482)
+. .+ ....++.+..++.....+....+..++..+.
T Consensus 635 ~~-~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 635 LP-LL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HH-HH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HH-HH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 11 12 2234677777766665666666666665554
No 82
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.52 E-value=1.7e-05 Score=82.16 Aligned_cols=301 Identities=12% Similarity=0.127 Sum_probs=210.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCCh---H
Q 043116 28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTS---E 104 (482)
Q Consensus 28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~---~ 104 (482)
.+..+++.+...+..-...++..+..+........ .+..+++..+.+.+.+.. .. +.|+.++..++.... .
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~~ 88 (986)
T 2iw3_A 15 VLEELFQKLSVATADNRHEIASEVASFLNGNIIEH---DVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSPS 88 (986)
T ss_dssp HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS---SCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCTT
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCCC
Confidence 34456666765445555677888888876531111 112357788888888776 33 899999999995331 2
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116 105 NTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD-SSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF 183 (482)
Q Consensus 105 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L 183 (482)
.--.++ +.++.++..+.+....+|..|..++..+... ++... ..++|.++..+.....-+.+..++.++..|
T Consensus 89 ~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~ 161 (986)
T 2iw3_A 89 VEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAM 161 (986)
T ss_dssp THHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred cccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 223333 5789999999888899999888888777733 33332 225888999995444667788899999999
Q ss_pred hcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCc-HHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHH
Q 043116 184 CRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTN-DKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRT 262 (482)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~ 262 (482)
+...+.........++|.+...+.+..+++...+..++..+|..-. ..+ ..+++.|++.+.+++. ...++..
T Consensus 162 ~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-----~~~~~~~~~~~~~p~~--~~~~~~~ 234 (986)
T 2iw3_A 162 VDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-----ERFIPSLIQCIADPTE--VPETVHL 234 (986)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-----GGGHHHHHHHHHCTTH--HHHHHHH
T ss_pred HHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-----hhhHHHHHHHhcChhh--hHHHHHH
Confidence 9865433334457899999999999999999999999988874211 111 2578999999988854 4455666
Q ss_pred HhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCChHHHHHHHh-cCChh
Q 043116 263 IGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA--GNREQIQAVIDAGLIGPIVNLLQ-DAEFG 339 (482)
Q Consensus 263 L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~-~~~~~ 339 (482)
|+.-..-..-....+ +=++|.|..-|... ...+++.++-++.|+|. .+|.....++. ..+|.+-.... -.+|+
T Consensus 235 l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe 310 (986)
T 2iw3_A 235 LGATTFVAEVTPATL--SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPE 310 (986)
T ss_dssp HTTCCCCSCCCHHHH--HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHH
T ss_pred hhcCeeEeeecchhH--HHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHH
Confidence 654433111111111 12567888888877 88899999999999998 77887777775 58888888776 46899
Q ss_pred HHHHHHHHHHHhh
Q 043116 340 TKKEAAWVISNAT 352 (482)
Q Consensus 340 ~~~~a~~aL~~l~ 352 (482)
+|..+..|+..+.
T Consensus 311 ~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 311 AREVTLRALKTLR 323 (986)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999988888884
No 83
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.50 E-value=2.1e-08 Score=79.17 Aligned_cols=121 Identities=17% Similarity=0.181 Sum_probs=92.2
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHH
Q 043116 196 RPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQ 275 (482)
Q Consensus 196 ~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 275 (482)
...++.+..+|+++++.++..++++|+.+... .++.|+..+.++++.+|..|+++|+++.. +
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---- 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H----
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H----
Confidence 45677888999999999999999998876531 14788899999999999999999999863 1
Q ss_pred HHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHh
Q 043116 276 CIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNA 351 (482)
Q Consensus 276 ~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l 351 (482)
..++.|+..++++ ++.||..|+++|+++. ++. .++.|..+++++++.++..|+.+|..+
T Consensus 73 -----~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~--~~~---------a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 -----RAVEPLIKLLEDD-SGFVRSGAARSLEQIG--GER---------VRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -----HHHHHHHHHHHHC-CTHHHHHHHHHHHHHC--SHH---------HHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -----HHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--cHH---------HHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 2477888889888 9999999999999985 222 577888888889999999999998653
No 84
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.48 E-value=3.3e-05 Score=82.54 Aligned_cols=393 Identities=11% Similarity=0.058 Sum_probs=204.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHh-------hcCCCC--hHHHHHHHHHHHHHhCCChHhH---
Q 043116 39 DDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEF-------LMREDY--PQLQFEAARALTNIASGTSENT--- 106 (482)
Q Consensus 39 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~l-------l~~~~~--~~v~~~a~~~L~~l~~~~~~~~--- 106 (482)
+++..+..|+.+|..+............+. .+++.++.+ +..++. .+.....++.+..++.......
T Consensus 256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 334 (971)
T 2x1g_F 256 DENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG 334 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788889999999987531111111121 123333332 233331 2666667777777764222211
Q ss_pred ---------HHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCC---------ChhhHHHHHH--hCChHHHH
Q 043116 107 ---------KVAIDHGAVPIFVKLLAS-----PSDDVREQAVWALGNVAGD---------SSRCRDFVLS--QGALIPLL 161 (482)
Q Consensus 107 ---------~~~~~~g~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~---------~~~~~~~~~~--~~~i~~l~ 161 (482)
..+. .+++.++.+... .++++...+++.+..++.. .+.....+.. ...++.++
T Consensus 335 ~~~~~~~~~~~l~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 412 (971)
T 2x1g_F 335 ITSADPELSILVH--RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILV 412 (971)
T ss_dssp HHTCCHHHHHHHH--HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH
T ss_pred hccCcccccHHHH--HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 1111 345566665532 4677888899888877531 1111111111 12344455
Q ss_pred HHHcchhh--------------hhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhcc-----CChhHHHHHHHHHH
Q 043116 162 AELNEHAK--------------LSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRS-----NDEKVLTDACRALA 222 (482)
Q Consensus 162 ~~l~~~~~--------------~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~-----~~~~~~~~~l~~L~ 222 (482)
..+...++ ...+..+..++..++...+ ......+++.+...+.+ .++..++.++.+++
T Consensus 413 ~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~ 489 (971)
T 2x1g_F 413 RKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN---DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQ 489 (971)
T ss_dssp HHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT---THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence 55421111 1344556667777765432 33344555555555544 67889999999999
Q ss_pred HhccCCcHHHHHHHHhCcHHHHHHhhC--CCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHH
Q 043116 223 YLADGTNDKIQAVIEAGVCPRLVKLLG--HRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKK 300 (482)
Q Consensus 223 ~l~~~~~~~~~~~~~~~~l~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~ 300 (482)
.+++.........+. .+++.+ ..+. ++++.++..++++++.++..-....+.+ ..+++.++..+. +.++.
T Consensus 490 ~iae~~~~~~~~~l~-~l~~~l-~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l~----~~v~~ 561 (971)
T 2x1g_F 490 SVAEHFGGEEKRQIP-RLMRVL-AEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAINLLVRGLN----SSMSA 561 (971)
T ss_dssp HTTTC------CHHH-HHHHHH-HHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHHHHHH----SSCHH
T ss_pred HHHhhcChhhhHHHH-HHHHHH-HhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHhC----hHHHH
Confidence 999765432211111 133322 2223 3478899999999999885322111111 135566666662 57999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc--CChhHHHHHHHHHHHhhcCCC-HHHHHHHHH--cCChHHHHhc
Q 043116 301 EVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQD--AEFGTKKEAAWVISNATSGGT-HEQIKHLVR--EGCVKPLCDL 375 (482)
Q Consensus 301 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~~~~~a~~aL~~l~~~~~-~~~~~~l~~--~~~l~~L~~l 375 (482)
.|++++.+++......+...++ .++..+..++.. -+...+..+..+++.++.... .+...++.. .-.+..+.+.
T Consensus 562 ~A~~al~~l~~~~~~~l~p~~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~ 640 (971)
T 2x1g_F 562 QATLGLKELCRDCQLQLKPYAD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAI 640 (971)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999755554544443 477777788876 357888999999999876422 222222222 1123333333
Q ss_pred CCCC--CHHH---HHHHHHHHHHHHHhchhccccCCCC--cccHHHHHHHHhchHHHHHHhhc--CCCHHHHHHHHHHHH
Q 043116 376 LPCP--DPQI---VTVCLIGLENILKVGEAEKNTDNIG--DVNQYAQLVEEAEGLEKIENLQS--HDNNDIHEMSVKILE 446 (482)
Q Consensus 376 l~~~--~~~v---~~~~l~~L~~l~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~l~~l~~--~~~~~v~~~a~~~l~ 446 (482)
++.+ +++. ...++..|..++..-.......... ..+++...+ ...++.+..+.. ..++++.+.+..++.
T Consensus 641 ~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~v~e~~~~~~~ 718 (971)
T 2x1g_F 641 CQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVM--QRTMPIFKRIAEMWVEEIDVLEAACSAMK 718 (971)
T ss_dssp HTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHH--HTTHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHH--HHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3333 3322 2334555555554322110000000 011122222 244666666643 246788888888887
Q ss_pred Hh
Q 043116 447 TY 448 (482)
Q Consensus 447 ~~ 448 (482)
+.
T Consensus 719 ~~ 720 (971)
T 2x1g_F 719 HA 720 (971)
T ss_dssp HH
T ss_pred HH
Confidence 73
No 85
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.47 E-value=6.6e-08 Score=76.25 Aligned_cols=122 Identities=18% Similarity=0.197 Sum_probs=93.5
Q ss_pred hcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh
Q 043116 68 QSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC 147 (482)
Q Consensus 68 ~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 147 (482)
....++.+..+|++++ +.+|..|+++|+.+.. ..++.|+.++.++++.+|..|+++|+++.. +.
T Consensus 10 ~~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~~- 73 (131)
T 1te4_A 10 HSSGLVPRGSHMADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--ER- 73 (131)
T ss_dssp -----------CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--HH-
T ss_pred ccccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--HH-
Confidence 3456888999999988 8999999999987743 126899999999999999999999999852 11
Q ss_pred HHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHh
Q 043116 148 RDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYL 224 (482)
Q Consensus 148 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l 224 (482)
.++.|+..+ ++.+..++..++++|..+.. ...++.|..+++++++.++..++.+|..+
T Consensus 74 --------a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 74 --------AVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp --------HHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred --------HHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 377888888 67888999999999998852 46789999999999999999999998753
No 86
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.46 E-value=0.00021 Score=76.17 Aligned_cols=343 Identities=11% Similarity=0.051 Sum_probs=194.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCC------h
Q 043116 30 PTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGT------S 103 (482)
Q Consensus 30 ~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~------~ 103 (482)
..+++.+.++++.++.....++..++..+-.. --.++++.|++.+++++ +..+..++.++..++... +
T Consensus 88 ~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~-----~Wp~ll~~L~~~l~s~~-~~~~~~aL~~l~~i~~~~~~~~~~~ 161 (960)
T 1wa5_C 88 KEIVPLMISLPNNLQVQIGEAISSIADSDFPD-----RWPTLLSDLASRLSNDD-MVTNKGVLTVAHSIFKRWRPLFRSD 161 (960)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTT-----TCTTHHHHHHTTCCSSC-TTHHHHHHHHHHHHHGGGTTSCCCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhhCcc-----chhHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhcCh
Confidence 34556655556888888888888888753111 01457999999998887 788899999999998732 1
Q ss_pred HhHHHH---HhCCChHHHHH-------hhCCCCH---------HHHHHHHHHHHHhhC-CChhh-HHHHHHhCChHHHHH
Q 043116 104 ENTKVA---IDHGAVPIFVK-------LLASPSD---------DVREQAVWALGNVAG-DSSRC-RDFVLSQGALIPLLA 162 (482)
Q Consensus 104 ~~~~~~---~~~g~i~~L~~-------ll~~~~~---------~~~~~a~~~L~~l~~-~~~~~-~~~~~~~~~i~~l~~ 162 (482)
+.+..+ +. ...+.++. .+..... ++...++.+++.+.. +.+.. .+.+. ..++.+.+
T Consensus 162 ~~~~~l~~~l~-~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~--~~~~~~~~ 238 (960)
T 1wa5_C 162 ELFLEIKLVLD-VFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQ--VGMGIFHK 238 (960)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHH--HHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH--HHHHHHHH
Confidence 222211 11 12333333 2443321 223346667766652 22221 11111 12344455
Q ss_pred HHcch-----hh---------hhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc-----cCChhHHHHHHHHHHH
Q 043116 163 ELNEH-----AK---------LSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR-----SNDEKVLTDACRALAY 223 (482)
Q Consensus 163 ~l~~~-----~~---------~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~-----~~~~~~~~~~l~~L~~ 223 (482)
.+... .+ ..++..++.++..+....+..-......+++.+...+. ..++.++..++..+..
T Consensus 239 ~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~ 318 (960)
T 1wa5_C 239 YLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTA 318 (960)
T ss_dssp HHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHH
T ss_pred HHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHH
Confidence 55221 11 23556677777777654321111233456666666664 3456788888888888
Q ss_pred hccCCcHHHHHHHH-hCcHH-----HHHHhhCC-----------------------CChhhHHHHHHHHhHhhcCChhhH
Q 043116 224 LADGTNDKIQAVIE-AGVCP-----RLVKLLGH-----------------------RSRLVLTAALRTIGNIVTGDDFQT 274 (482)
Q Consensus 224 l~~~~~~~~~~~~~-~~~l~-----~L~~ll~~-----------------------~~~~v~~~a~~~L~~l~~~~~~~~ 274 (482)
++..... . .++. .+.++ .+++.|.- .....|..|..+|..++...+...
T Consensus 319 ~~~~~~~-~-~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v 396 (960)
T 1wa5_C 319 VTRIPKY-F-EIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLV 396 (960)
T ss_dssp HHTSHHH-H-GGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHH
T ss_pred HhCcHhH-H-HHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhH
Confidence 7753221 1 1111 11222 23333321 112467778888888876544221
Q ss_pred HHHHhcCchHHHHHHhc------CCCchhHHHHHHHHHHHHhcCC--HH----------HHHHHHHcCChHHHHHHHhcC
Q 043116 275 QCIINCGALRYLLGLLI------HNHNKSIKKEVCWIISNITAGN--RE----------QIQAVIDAGLIGPIVNLLQDA 336 (482)
Q Consensus 275 ~~l~~~~~i~~L~~ll~------~~~~~~v~~~a~~~L~nl~~~~--~~----------~~~~l~~~~~i~~L~~ll~~~ 336 (482)
.. .+++.+...+. +. +...|..|..+++.++.+. .. ....++...+++ .+.+.
T Consensus 397 ---~~-~~l~~i~~~l~~~~~~~~~-~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p----~l~~~ 467 (960)
T 1wa5_C 397 ---TN-IFLAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP----DLTSN 467 (960)
T ss_dssp ---HH-HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH----HHHCS
T ss_pred ---HH-HHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHH----HhcCC
Confidence 11 13444445554 34 6778899999999997521 11 122222222333 33555
Q ss_pred ---ChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHh
Q 043116 337 ---EFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKV 397 (482)
Q Consensus 337 ---~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~ 397 (482)
++.+|..++|+++.++..-.++.... +++.++..+.++++.|+..|..+|.++++.
T Consensus 468 ~~~~p~vr~~a~~~lg~~~~~~~~~~l~~-----~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 468 NIPHIILRVDAIKYIYTFRNQLTKAQLIE-----LMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp SCSCHHHHHHHHHHHHHTGGGSCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred CCCCceehHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 88999999999999987544443222 677888888888899999999999999874
No 87
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.37 E-value=1.2e-05 Score=71.67 Aligned_cols=187 Identities=11% Similarity=0.087 Sum_probs=142.1
Q ss_pred HHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH-
Q 043116 243 RLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVI- 321 (482)
Q Consensus 243 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~- 321 (482)
.++.-|.+.+.+.+..++.-|..+...+......+++.+++..|+++.... +...+..+..++.+++.+ ...+.-++
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~-v~Gm~gvvs 199 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLF-VDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhc-cccccchhC
Confidence 444555567778889999999996656778888999999999999999999 999999999999999875 34455555
Q ss_pred HcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHH--------c--CChHHHHhcCC---CCCHHHHHHHH
Q 043116 322 DAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVR--------E--GCVKPLCDLLP---CPDPQIVTVCL 388 (482)
Q Consensus 322 ~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~--------~--~~l~~L~~ll~---~~~~~v~~~~l 388 (482)
...++..+..++.+.+..+.+.|+..|..++...+ .....+.+ . ..+..|+.+++ ..|.++..+++
T Consensus 200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se-~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE-NNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc-ccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 45578889999998889999999999999987642 12222111 1 24788888887 68889999999
Q ss_pred HHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCC--CHHHH
Q 043116 389 IGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHD--NNDIH 438 (482)
Q Consensus 389 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~--~~~v~ 438 (482)
..+..++...+... ....+...+.+.|.-..+...+... ++++.
T Consensus 279 tLIN~lL~~apd~d------~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~ 324 (339)
T 3dad_A 279 TLINKTLAALPDQD------SFYDVTDALEQQGMEALVQRHLGTAGTDVDLR 324 (339)
T ss_dssp HHHHHHHHHCSSHH------HHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHH
T ss_pred HHHHHHHhcCCChh------HHHHHHHHHHHccHHHHHHHHHhccCCCHHHH
Confidence 99999998765432 1234677787778777788877665 45554
No 88
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.35 E-value=2e-05 Score=70.25 Aligned_cols=188 Identities=12% Similarity=0.103 Sum_probs=139.5
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHH
Q 043116 198 ALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCI 277 (482)
Q Consensus 198 ~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l 277 (482)
-+..++.-|.+.+.+.+..++..|..+...+......++..+++..|+.+....+..++..++.++.++..+.......+
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvv 198 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVV 198 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchh
Confidence 34456666777888889999999998665666778889999999999999999999999999999999998655543433
Q ss_pred HhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--------c--CChHHHHHHHh---cCChhHHHHH
Q 043116 278 INCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVID--------A--GLIGPIVNLLQ---DAEFGTKKEA 344 (482)
Q Consensus 278 ~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--------~--~~i~~L~~ll~---~~~~~~~~~a 344 (482)
-...++.++..++.+. +..|.+.|...|..++..++.....+.+ . ..++.|+.+|+ +.+.+++.++
T Consensus 199 s~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 199 AHSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT 277 (339)
T ss_dssp HCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence 3567899999999986 8999999999999998755433332222 1 24889999997 6899999999
Q ss_pred HHHHHHhhcCCC-HH----HHHHHHHcCChHHHHhcCCCC--CHHHHHH
Q 043116 345 AWVISNATSGGT-HE----QIKHLVREGCVKPLCDLLPCP--DPQIVTV 386 (482)
Q Consensus 345 ~~aL~~l~~~~~-~~----~~~~l~~~~~l~~L~~ll~~~--~~~v~~~ 386 (482)
+..|..+....+ .+ ....+.+.|.-..+...++.. +++++.+
T Consensus 278 mtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 278 VTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 998888876544 23 223333445445566656654 5565554
No 89
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.31 E-value=0.00037 Score=74.38 Aligned_cols=400 Identities=11% Similarity=0.067 Sum_probs=206.7
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH----h--cCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCC
Q 043116 28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVI----Q--SGVVPRFVEFLMREDYPQLQFEAARALTNIASG 101 (482)
Q Consensus 28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~----~--~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 101 (482)
.++.+++.+ .++..+..|+.++..+............+ . -+..+.+...+...+ .+.....++++..++..
T Consensus 242 ll~~l~~~l--~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d-~~~~~~~~~l~~~~~~~ 318 (963)
T 2x19_B 242 LIQAAFAAL--QDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGD-METSHGICRIAVALGEN 318 (963)
T ss_dssp HHHHHHHHT--TSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCC-HHHHHHHHHHHHHHHHH
Confidence 345555555 35667788999999998753211111111 1 112222223334445 55556666777766542
Q ss_pred ChHh-------HHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCC--------hhhHHHHHH--hCChHH
Q 043116 102 TSEN-------TKVAIDHGAVPIFVKLLAS-----PSDDVREQAVWALGNVAGDS--------SRCRDFVLS--QGALIP 159 (482)
Q Consensus 102 ~~~~-------~~~~~~~g~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~--------~~~~~~~~~--~~~i~~ 159 (482)
.+.. ...+. .+++.++.+... .++.+...++..+..++... +.....+.. ..+++.
T Consensus 319 ~~~~l~~~~~~~~~~~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 396 (963)
T 2x19_B 319 HSRALLDQVEHWQSFL--ALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDV 396 (963)
T ss_dssp HHHHHHHCGGGHHHHH--HHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHcCccchHHHH--HHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 1111 01111 345566665553 34556666666666665310 111111110 012344
Q ss_pred HHHHHcchhh-----------h---hHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHh----ccCChhHHHHHHHHH
Q 043116 160 LLAELNEHAK-----------L---SMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLI----RSNDEKVLTDACRAL 221 (482)
Q Consensus 160 l~~~l~~~~~-----------~---~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll----~~~~~~~~~~~l~~L 221 (482)
++..+....+ . +.+..+..+|..++...+ ......+++.+...+ .+.++..++.+++++
T Consensus 397 ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al 473 (963)
T 2x19_B 397 LLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLG---AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGF 473 (963)
T ss_dssp HHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHH
T ss_pred HHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4444421111 0 123345555555553211 122334455555556 556788999999999
Q ss_pred HHhccCCcHHHHHHHHhCcHHHHHHhh---CCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhH
Q 043116 222 AYLADGTNDKIQAVIEAGVCPRLVKLL---GHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSI 298 (482)
Q Consensus 222 ~~l~~~~~~~~~~~~~~~~l~~L~~ll---~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v 298 (482)
+.++....... ...++.++..+ .++++.++..++++++.++..-..... .+ ..+++.++..+.+ +.|
T Consensus 474 ~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~l-~~vl~~l~~~l~~---~~V 543 (963)
T 2x19_B 474 QSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-MI-NSVLPLVLHALGN---PEL 543 (963)
T ss_dssp HHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-HH-TTTHHHHHHHTTC---GGG
T ss_pred HHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-HH-HHHHHHHHHHhCC---chH
Confidence 99996643211 12233344333 345788999999999999863222222 22 3688888888854 689
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc--CChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcC
Q 043116 299 KKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQD--AEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLL 376 (482)
Q Consensus 299 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll 376 (482)
+..|++++.+++....+.....++ .++..+..++.. -+.+.+..+..+++.++....++......+ .+++.+.+.+
T Consensus 544 ~~~A~~al~~l~~~~~~~l~p~~~-~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~-~l~~~l~~~l 621 (963)
T 2x19_B 544 SVSSVSTLKKICRECKYDLPPYAA-NIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLH-SLISPYIQQL 621 (963)
T ss_dssp HHHHHHHHHHHHHHTGGGCTTTHH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHH
Confidence 999999999999643332222221 345555566664 256788899999999986544233222222 1333333322
Q ss_pred ----CC-CCHHHHH---HHHHHHHHHHHhchhccccC---CC--------CcccHHHHHHHHhchHHHHHHhh--cCCCH
Q 043116 377 ----PC-PDPQIVT---VCLIGLENILKVGEAEKNTD---NI--------GDVNQYAQLVEEAEGLEKIENLQ--SHDNN 435 (482)
Q Consensus 377 ----~~-~~~~v~~---~~l~~L~~l~~~~~~~~~~~---~~--------~~~~~~~~~l~~~~~~~~l~~l~--~~~~~ 435 (482)
+. .+++.+. ..+++|..+++......... .. ....++...+ ...++.+..+. ...+.
T Consensus 622 ~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 699 (963)
T 2x19_B 622 EKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVL--QQVFQLIQKVLSKWLNDA 699 (963)
T ss_dssp HHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHH--HHHHHHHHHHHHHHTTCH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHH--HHHHHHHHHHHHhccCch
Confidence 22 2444433 45666666665533211000 00 0112233332 22344444443 23467
Q ss_pred HHHHHHHHHHHHhc
Q 043116 436 DIHEMSVKILETYW 449 (482)
Q Consensus 436 ~v~~~a~~~l~~~~ 449 (482)
++.+.+..++..+.
T Consensus 700 ~v~e~~~~~l~~~~ 713 (963)
T 2x19_B 700 QVVEAVCAIFEKSV 713 (963)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888754
No 90
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.30 E-value=0.00036 Score=73.99 Aligned_cols=350 Identities=10% Similarity=0.106 Sum_probs=189.4
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHH-HhhcCCCChHHHHHHHHHHHHHhCCC---h
Q 043116 29 LPTMVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFV-EFLMREDYPQLQFEAARALTNIASGT---S 103 (482)
Q Consensus 29 i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~-~ll~~~~~~~v~~~a~~~L~~l~~~~---~ 103 (482)
++.+.+.+. +.++++...++.++....+.- ....+++.++++.+. .++. + ++++..|+.||..+.... +
T Consensus 196 ~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI---~i~~i~~~~ll~~l~~~~L~--~-~~~r~~A~ecL~eIv~~~~~~~ 269 (1023)
T 4hat_C 196 FKLCFQVLEQGASSSLIVATLESLLRYLHWI---PYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQD 269 (1023)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHTTTS---CTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHTSCCCSS
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhC---CHHHhcchhHHHHHHHHHcC--C-HHHHHHHHHHHHHHHccccCCc
Confidence 344444444 556778888999999888753 367778889999999 8885 4 789999999999998721 2
Q ss_pred --HhHHHHHhC--CChHHH--------------HHhhCCCCHHHHHHHHHHHHHhh-------CCChhhHHHHHHhCChH
Q 043116 104 --ENTKVAIDH--GAVPIF--------------VKLLASPSDDVREQAVWALGNVA-------GDSSRCRDFVLSQGALI 158 (482)
Q Consensus 104 --~~~~~~~~~--g~i~~L--------------~~ll~~~~~~~~~~a~~~L~~l~-------~~~~~~~~~~~~~~~i~ 158 (482)
+..+.+... +.++.+ ...-...+.+....-+..+..+. ...+..+..+. .++.
T Consensus 270 ~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~ 347 (1023)
T 4hat_C 270 NDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQ 347 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHH
Confidence 122111100 111111 11112234555554555554333 12222222221 1233
Q ss_pred HHHHHHcchhhhhHHHHHHHHHHHhhcCC--CCCChhhhh----hHHHHHHHHhccCC--------------------hh
Q 043116 159 PLLAELNEHAKLSMLRTATWTLSNFCRGK--PQPPFNQIR----PALRVLAQLIRSND--------------------EK 212 (482)
Q Consensus 159 ~l~~~l~~~~~~~~~~~a~~~L~~L~~~~--~~~~~~~~~----~~~~~L~~ll~~~~--------------------~~ 212 (482)
.++..- ..++.++...++.....+...- ......... .+++.++.-+.-+. ++
T Consensus 348 ~Ll~~~-~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~ 426 (1023)
T 4hat_C 348 YLIQLS-KIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDT 426 (1023)
T ss_dssp HHHHHT-TSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGG
T ss_pred HHHHhh-CCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHH
Confidence 444432 4556777777776666665421 111222333 34444444433221 00
Q ss_pred -HHHHHH-HHHHHhccCCc-HHHHHHHHhCcHHHHHHhhCC--CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHH
Q 043116 213 -VLTDAC-RALAYLADGTN-DKIQAVIEAGVCPRLVKLLGH--RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLL 287 (482)
Q Consensus 213 -~~~~~l-~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~ 287 (482)
...... .+|..++.-.. +..+ -+++.+...+.. .++..++.++++++.++.+..+....-.-..+++.|+
T Consensus 427 ~~~f~~~Rd~L~~l~~l~~~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll 501 (1023)
T 4hat_C 427 IQLYKSEREVLVYLTHLNVIDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLL 501 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHH
Confidence 011011 22222221111 1111 122334444443 5788999999999999976543322122235777888
Q ss_pred HHhcCC----CchhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHH
Q 043116 288 GLLIHN----HNKSIKKEVCWIISNITA---GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQI 360 (482)
Q Consensus 288 ~ll~~~----~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~ 360 (482)
.++.+. ....++..++|+++.++. ..++... .++..|++.+.+.++.++..|++++.+++..+.....
T Consensus 502 ~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~ 576 (1023)
T 4hat_C 502 DLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFV 576 (1023)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 887641 145567788899998876 2333222 2555677777777889999999999999974332211
Q ss_pred H--------HHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhch
Q 043116 361 K--------HLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGE 399 (482)
Q Consensus 361 ~--------~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~ 399 (482)
. ++. .++..+......-+++-+..+.+++..++...+
T Consensus 577 ~~~~~e~~p~~~--~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 577 IQQPRESEPFIQ--TIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp SCCTTCSSCHHH--HHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred ccCCCCCchhHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 0 111 123333444444566666778888888887644
No 91
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.28 E-value=0.00023 Score=76.07 Aligned_cols=392 Identities=8% Similarity=0.010 Sum_probs=217.4
Q ss_pred hhccHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCC---CCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhC
Q 043116 25 KFEILPTMVAGVW-SDDNKVQLEATTLFRKMLSFDR---NSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIAS 100 (482)
Q Consensus 25 ~~~~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 100 (482)
..+..+.+...+. +.++.++..|+..|.+.....- ++.....+...+++.+.+.- .+. +.++.+.+.++..++.
T Consensus 37 ~p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~-~~~-~~vr~kl~~~la~i~~ 114 (971)
T 2x1g_F 37 SPQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFA-GGP-KIVLNRLCISLGAYIV 114 (971)
T ss_dssp STHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHT-TSC-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhC-CCC-HHHHHHHHHHHHHHHH
Confidence 3456667788886 5678999999999999886420 22244455555666666653 334 7899999999999987
Q ss_pred CChHhHHHHHhCCChHHHHHhhCCC------CHHHHHHHHHHHHHhhCC-----Chh----hHHHHHHhCChHHHHHHH-
Q 043116 101 GTSENTKVAIDHGAVPIFVKLLASP------SDDVREQAVWALGNVAGD-----SSR----CRDFVLSQGALIPLLAEL- 164 (482)
Q Consensus 101 ~~~~~~~~~~~~g~i~~L~~ll~~~------~~~~~~~a~~~L~~l~~~-----~~~----~~~~~~~~~~i~~l~~~l- 164 (482)
.... -..+.++.++..+.++ ++..++.++.+|..++.+ ... .++.+. ..++.++.++
T Consensus 115 ~~~p-----~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~--~~~~~vl~ll~ 187 (971)
T 2x1g_F 115 HMLG-----EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIA--KRVQLVIHTVE 187 (971)
T ss_dssp HTTC-----C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHH--TTHHHHHHHHH
T ss_pred Hccc-----cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 4321 1235778888888764 567788888888887732 101 112221 2344444443
Q ss_pred ---cchhhh-------hHHHHHHHHHHHhhc--CCCCCChhhhhhHHHHHHHHhc----------------cCChhHHHH
Q 043116 165 ---NEHAKL-------SMLRTATWTLSNFCR--GKPQPPFNQIRPALRVLAQLIR----------------SNDEKVLTD 216 (482)
Q Consensus 165 ---~~~~~~-------~~~~~a~~~L~~L~~--~~~~~~~~~~~~~~~~L~~ll~----------------~~~~~~~~~ 216 (482)
....+. .+...++.++..... ..|.. ....+++.+.. +. .++++++..
T Consensus 188 ~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (971)
T 2x1g_F 188 RYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE---GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAES 263 (971)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG---GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHH
T ss_pred HHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc---ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHH
Confidence 222222 577778888876555 22222 44677777776 41 146789999
Q ss_pred HHHHHHHhccCCcH--HHHHHHHhCcHHHHHH-------hhCCCCh---hhHHHHHHHHhHhhcCChhhHH---------
Q 043116 217 ACRALAYLADGTND--KIQAVIEAGVCPRLVK-------LLGHRSR---LVLTAALRTIGNIVTGDDFQTQ--------- 275 (482)
Q Consensus 217 ~l~~L~~l~~~~~~--~~~~~~~~~~l~~L~~-------ll~~~~~---~v~~~a~~~L~~l~~~~~~~~~--------- 275 (482)
++.++..+....+. ....+ . .+++.++. .+...+. ......+..+..++........
T Consensus 264 a~~~l~~i~~~~~~~~~~~~~-~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 341 (971)
T 2x1g_F 264 CLKTMVNIIIQPDCHNYPKTA-F-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPE 341 (971)
T ss_dssp HHHHHHHHHHCSGGGGCHHHH-H-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHcCccccccHHHH-H-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCccc
Confidence 99999998864331 11111 1 12222222 2234442 6677777777777643322111
Q ss_pred --HHHhcCchHHHHHHhcC----CCchhHHHHHHHHHHHHhcC--------C-HH---HHHHHHHcCChHHHHHHHhcCC
Q 043116 276 --CIINCGALRYLLGLLIH----NHNKSIKKEVCWIISNITAG--------N-RE---QIQAVIDAGLIGPIVNLLQDAE 337 (482)
Q Consensus 276 --~l~~~~~i~~L~~ll~~----~~~~~v~~~a~~~L~nl~~~--------~-~~---~~~~l~~~~~i~~L~~ll~~~~ 337 (482)
..+ ..+++.++.+..+ ..+.++...+++....++.. . +. ....++. .+++.++..+..++
T Consensus 342 ~~~~l-~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~~l~~~~~~p~ 419 (971)
T 2x1g_F 342 LSILV-HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYA-HLTRILVRKSEQPD 419 (971)
T ss_dssp HHHHH-HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHH-HHHHHHHHHTSCCC
T ss_pred ccHHH-HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH-HHHHHHHHHhcCCC
Confidence 001 1355666666544 22677899999988887541 0 11 1112222 34555555443211
Q ss_pred h---------------hHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCC-----CCCHHHHHHHHHHHHHHHHh
Q 043116 338 F---------------GTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP-----CPDPQIVTVCLIGLENILKV 397 (482)
Q Consensus 338 ~---------------~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-----~~~~~v~~~~l~~L~~l~~~ 397 (482)
. ..|..+..++..++..........+ ++.+.+.+. .+++..++.++.++..+.+.
T Consensus 420 ~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~-----~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~ 494 (971)
T 2x1g_F 420 EKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEIL-----AAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEH 494 (971)
T ss_dssp TTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHH-----HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC
T ss_pred cccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhh
Confidence 1 3556677777777654332332322 222222222 25778899999999988754
Q ss_pred chhccccCCCCcccHHHHHHHHhchHHHHHHhhc-CCCHHHHHHHHHHHHHhcCC
Q 043116 398 GEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQS-HDNNDIHEMSVKILETYWCG 451 (482)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~-~~~~~v~~~a~~~l~~~~~~ 451 (482)
..... ...... .++.+..+.. ++++.|+..+.+++.+|...
T Consensus 495 ~~~~~--------~~~l~~-----l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~ 536 (971)
T 2x1g_F 495 FGGEE--------KRQIPR-----LMRVLAEIPYEKLNVKLLGTALETMGSYCNW 536 (971)
T ss_dssp --------------CHHHH-----HHHHHHHSCTTTSCHHHHHHHHHHHHHTHHH
T ss_pred cChhh--------hHHHHH-----HHHHHHhcCccccCHHHHHHHHHHHHHHHHH
Confidence 43321 111121 2334555543 35899999999999987643
No 92
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.21 E-value=0.00044 Score=71.82 Aligned_cols=299 Identities=14% Similarity=0.150 Sum_probs=199.8
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC---hhhHHHH
Q 043116 75 FVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS---SRCRDFV 151 (482)
Q Consensus 75 L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~ 151 (482)
+.+-+...+ ..-+..++..+.++........ .+..+++..+.+.+.+.... +.|+.++..+|... +...-.+
T Consensus 19 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~ 93 (986)
T 2iw3_A 19 LFQKLSVAT-ADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI 93 (986)
T ss_dssp HHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred HHhhccccc-hhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch
Confidence 444455444 3445667777777655321111 11225678888888765444 88999999998433 2233333
Q ss_pred HHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccC-ChhHHHHHHHHHHHhccCCcH
Q 043116 152 LSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSN-DEKVLTDACRALAYLADGTND 230 (482)
Q Consensus 152 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~~~~~~l~~L~~l~~~~~~ 230 (482)
+ +.++.++... .+.+..++..|..+...+...-+ ......++|.|...+.+. .+.....++.++..++...++
T Consensus 94 ~--~~~~~~~~~~-~dk~~~v~~aa~~~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~ 167 (986)
T 2iw3_A 94 V--QLVPAICTNA-GNKDKEIQSVASETLISIVNAVN---PVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKD 167 (986)
T ss_dssp H--TTHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSC---GGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHH
T ss_pred H--HHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHH
Confidence 3 4788888888 45556788888778777776532 223378899999988755 699999999999999976554
Q ss_pred HHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC--ChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHH
Q 043116 231 KIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTG--DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISN 308 (482)
Q Consensus 231 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~n 308 (482)
+.. ..=..++|.+-..+.+..+++...|..++..++.. |.+. ...+|.|++.+.++ +. ..++...|+.
T Consensus 168 ~~~-~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p-~~--~~~~~~~l~~ 237 (986)
T 2iw3_A 168 QVA-LRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADP-TE--VPETVHLLGA 237 (986)
T ss_dssp HHH-HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCT-TH--HHHHHHHHTT
T ss_pred HHH-HhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcCh-hh--hHHHHHHhhc
Confidence 433 22236889999999999999999999999988862 3332 25789999999887 33 2233333333
Q ss_pred Hhc---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcC-CCHHHHHHHHHcCChHHHHhcCC-CCCHHH
Q 043116 309 ITA---GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSG-GTHEQIKHLVREGCVKPLCDLLP-CPDPQI 383 (482)
Q Consensus 309 l~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~-~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v 383 (482)
-.. -+..... =++|.|.+-|......+++.++..+.|++.- .+|.....++ -..++-+....+ ..+|++
T Consensus 238 ~tfv~~v~~~~l~-----~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~ 311 (986)
T 2iw3_A 238 TTFVAEVTPATLS-----IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEA 311 (986)
T ss_dssp CCCCSCCCHHHHH-----HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHH
T ss_pred CeeEeeecchhHH-----HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHH
Confidence 222 1122111 1466777777788899999999999999763 3555555533 346777777555 588999
Q ss_pred HHHHHHHHHHHHHhchh
Q 043116 384 VTVCLIGLENILKVGEA 400 (482)
Q Consensus 384 ~~~~l~~L~~l~~~~~~ 400 (482)
+..+..++..+.+.+..
T Consensus 312 r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 312 REVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 99999999988776554
No 93
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.17 E-value=0.0033 Score=67.61 Aligned_cols=356 Identities=9% Similarity=0.092 Sum_probs=190.0
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---CCCC---c-H-----HHHHh--cCCHHHHHHhhcCCCChHHHHHHH
Q 043116 27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSF---DRNS---P-I-----EKVIQ--SGVVPRFVEFLMREDYPQLQFEAA 92 (482)
Q Consensus 27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~---~~~~---~-~-----~~~~~--~g~~~~L~~ll~~~~~~~v~~~a~ 92 (482)
+.++.+++.++ .++.....++.+|..+... .... . + ..+.. ..+++.+...+....+++++..++
T Consensus 138 ~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL 216 (1049)
T 3m1i_C 138 EFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATL 216 (1049)
T ss_dssp THHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 45778888876 4454455555555555421 1011 0 0 11211 123344455555443378999999
Q ss_pred HHHHHHhCCChHhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCC--hh---hHHHHHHhCChHHHHHHHc-
Q 043116 93 RALTNIASGTSENTKVAIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAGDS--SR---CRDFVLSQGALIPLLAELN- 165 (482)
Q Consensus 93 ~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~--~~---~~~~~~~~~~i~~l~~~l~- 165 (482)
.++.+....-+ ...+.+...++.+.+ ++ .++.++..|+.+|..+.... +. ....+.. .++.++..+.
T Consensus 217 ~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~--l~~~~l~~l~~ 290 (1049)
T 3m1i_C 217 ESLLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL--FFQNTLQQIAT 290 (1049)
T ss_dssp HHHHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHH--HHHHHHHHHHH
Confidence 99998766332 233555667777773 44 37899999999999998542 21 1111111 1122222210
Q ss_pred ----------------chhhhhHHHHHHHHHHHhhcC------CCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 043116 166 ----------------EHAKLSMLRTATWTLSNFCRG------KPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAY 223 (482)
Q Consensus 166 ----------------~~~~~~~~~~a~~~L~~L~~~------~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~ 223 (482)
.+.+.+.....+..+..+... .+.........+++.++.+...++.++...++..+..
T Consensus 291 si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~ 370 (1049)
T 3m1i_C 291 SVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHN 370 (1049)
T ss_dssp HTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred hhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 122344444444444333221 0111122335667777777777788888888877777
Q ss_pred hcc----CCc--HHHHHHHHhCcHHHHHHhhCCCCh----------------------hhHHHHHHHHhHhhcCChhhHH
Q 043116 224 LAD----GTN--DKIQAVIEAGVCPRLVKLLGHRSR----------------------LVLTAALRTIGNIVTGDDFQTQ 275 (482)
Q Consensus 224 l~~----~~~--~~~~~~~~~~~l~~L~~ll~~~~~----------------------~v~~~a~~~L~~l~~~~~~~~~ 275 (482)
++. ... .....++ ..+++.++..+..++. ..+..+..+|..++...+....
T Consensus 371 l~~~l~~~~~~~~~~~~~l-~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l 449 (1049)
T 3m1i_C 371 LVADLFYEPLKKHIYEEIC-SQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTE 449 (1049)
T ss_dssp HHHHHHHSTTCGGGGHHHH-HHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHhchhHHHHHHHHH-HHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 665 111 1111111 1344555555533210 1233455566555532222111
Q ss_pred HHHhcCchHHHHHHhcC-CCchhHHHHHHHHHHHHhcCCHHHH-HHHHHcCChHHHHHHHh-----cCChhHHHHHHHHH
Q 043116 276 CIINCGALRYLLGLLIH-NHNKSIKKEVCWIISNITAGNREQI-QAVIDAGLIGPIVNLLQ-----DAEFGTKKEAAWVI 348 (482)
Q Consensus 276 ~l~~~~~i~~L~~ll~~-~~~~~v~~~a~~~L~nl~~~~~~~~-~~l~~~~~i~~L~~ll~-----~~~~~~~~~a~~aL 348 (482)
. -+.+.+-..+.+ ..+...+..++++++.++.+..... ..++. .+++.+..+.. ++++.++..+++++
T Consensus 450 ~----~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~-~v~~~l~~l~~~~~~~~~~~~v~~~~~~~l 524 (1049)
T 3m1i_C 450 E----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLTVKKRGKDNKAVVASDIMYVV 524 (1049)
T ss_dssp H----HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHTTSSCSHHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHH-HHHHHHHHHHhhhccccchHHHHHHHHHHH
Confidence 1 123444455543 2367889999999999986432221 12111 24444444332 12344555688888
Q ss_pred HHhhcC--CCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchh
Q 043116 349 SNATSG--GTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEA 400 (482)
Q Consensus 349 ~~l~~~--~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~ 400 (482)
+.++.. ..++... .+++.+++.+.++++.|+..|..++.++++.+..
T Consensus 525 gry~~~~~~~~~~l~-----~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~ 573 (1049)
T 3m1i_C 525 GQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1049)
T ss_dssp HHCHHHHHHCHHHHH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHhHHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 877542 1233222 2677888888888999999999999999986543
No 94
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.11 E-value=0.00092 Score=71.93 Aligned_cols=352 Identities=9% Similarity=0.109 Sum_probs=185.4
Q ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHH-hhcCCCChHHHHHHHHHHHHHhCCC--hH-
Q 043116 30 PTMVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVE-FLMREDYPQLQFEAARALTNIASGT--SE- 104 (482)
Q Consensus 30 ~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~-ll~~~~~~~v~~~a~~~L~~l~~~~--~~- 104 (482)
+.+.+.+. .+++.++..++.++......- + ...+.+..+++.+.+ ++. + ++++..|+.||..+.... +.
T Consensus 197 ~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi--~-~~~~~~~~ll~~l~~~~l~--~-~~~~~~a~~~L~~i~~~~~~~~~ 270 (1049)
T 3m1i_C 197 KLCFQVLEQGSSSSLIVATLESLLRYLHWI--P-YRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDN 270 (1049)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHTTTS--C-THHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhhC--C-HHHHhhhhHHHHHHHHhCC--C-HhHHHHHHHHHHHHHhCCCCcch
Confidence 33444454 456788888999998887653 2 344566777887773 443 5 899999999999998642 21
Q ss_pred --hHHHHHh--CCChHHHHH-hh-------------CCCCHHHHHHHHHHHHHhhC-------CChhhHHHHHHhCChHH
Q 043116 105 --NTKVAID--HGAVPIFVK-LL-------------ASPSDDVREQAVWALGNVAG-------DSSRCRDFVLSQGALIP 159 (482)
Q Consensus 105 --~~~~~~~--~g~i~~L~~-ll-------------~~~~~~~~~~a~~~L~~l~~-------~~~~~~~~~~~~~~i~~ 159 (482)
....+.. .+++..+.. ++ .+.+.+.....+..+..+.. ..+..+..+. .+++.
T Consensus 271 ~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~--~~l~~ 348 (1049)
T 3m1i_C 271 DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQY 348 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHH--HHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHH--HHHHH
Confidence 1111110 122222221 11 12234444444444433321 1111122211 23555
Q ss_pred HHHHHcchhhhhHHHHHHHHHHHhhc----CCCCC--ChhhhhhHHHHHHHHhccCC--------h--------------
Q 043116 160 LLAELNEHAKLSMLRTATWTLSNFCR----GKPQP--PFNQIRPALRVLAQLIRSND--------E-------------- 211 (482)
Q Consensus 160 l~~~l~~~~~~~~~~~a~~~L~~L~~----~~~~~--~~~~~~~~~~~L~~ll~~~~--------~-------------- 211 (482)
++... ..++.++...++..+..++. ..... .......+++.++..+.-++ +
T Consensus 349 ll~~~-~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~ 427 (1049)
T 3m1i_C 349 LIQLS-KIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTI 427 (1049)
T ss_dssp HHHHH-TSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHH
T ss_pred HHHHH-cCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHH
Confidence 55554 34566777778877777776 32111 11223445555555443210 0
Q ss_pred hHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhC--CCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHH
Q 043116 212 KVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLG--HRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGL 289 (482)
Q Consensus 212 ~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~l 289 (482)
..+..+..+|..++.......- .-+.+.+-..+. ..++..+..++++++.++.........-.-..+++.+..+
T Consensus 428 ~~~~~~~~~L~~l~~~~~~~~l----~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l 503 (1049)
T 3m1i_C 428 QLYKSEREVLVYLTHLNVIDTE----EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDL 503 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHH----HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHH----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHH
Confidence 1233344555555532221111 112334444444 3567889999999999986543321111112345555554
Q ss_pred hcCC----CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHH-----
Q 043116 290 LIHN----HNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQI----- 360 (482)
Q Consensus 290 l~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~----- 360 (482)
.... ..+.++..++|+++.++.--...- .++. .+++.+++.+.++++.++..|++++.+++..+.....
T Consensus 504 ~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~-~~l~-~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~ 581 (1049)
T 3m1i_C 504 TVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NFLR-TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPR 581 (1049)
T ss_dssp TTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCH-HHHH-HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTT
T ss_pred HhhhccccchHHHHHHHHHHHHHHHHHHHhHH-HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 3321 145566679999998875111111 1222 3667777788888899999999999999975332211
Q ss_pred ---HHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhc
Q 043116 361 ---KHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVG 398 (482)
Q Consensus 361 ---~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~ 398 (482)
.++ ..++..+..++...+.+-.....+++..++...
T Consensus 582 ~~~p~~--~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~ 620 (1049)
T 3m1i_C 582 ESEPFI--QTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1049)
T ss_dssp CSSCHH--HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred CCCcHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence 111 123444444555555555566777777776543
No 95
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.06 E-value=0.00092 Score=71.35 Aligned_cols=338 Identities=12% Similarity=0.078 Sum_probs=188.1
Q ss_pred cCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhh---CCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCC
Q 043116 80 MREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLL---ASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGA 156 (482)
Q Consensus 80 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 156 (482)
.+.+ ...++.++++++.++....+.. ...++.++..+ .++++.++..++|+++.++..-....+. -..+
T Consensus 459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~--l~~v 530 (963)
T 2x19_B 459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM--INSV 530 (963)
T ss_dssp CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH--HTTT
T ss_pred CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH--HHHH
Confidence 3445 5789999999999987543211 12334444433 3357889999999999998421111122 2357
Q ss_pred hHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccC--ChhHHHHHHHHHHHhccCCc-HHHH
Q 043116 157 LIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSN--DEKVLTDACRALAYLADGTN-DKIQ 233 (482)
Q Consensus 157 i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~~~~~~l~~L~~l~~~~~-~~~~ 233 (482)
++.++..+. + +.++..|++++.+++......-......+++.+..++... +.+.+..+..+++.++...+ +...
T Consensus 531 l~~l~~~l~-~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 531 LPLVLHALG-N--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHHTT-C--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHhC-C--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 888888883 2 7889999999999997543323334567777788887753 56788889999999886443 3322
Q ss_pred HHHHhCcHHHHHHhh----CC-CChhhHH---HHHHHHhHhhcCCh----------------------hhHHHHHhcCch
Q 043116 234 AVIEAGVCPRLVKLL----GH-RSRLVLT---AALRTIGNIVTGDD----------------------FQTQCIINCGAL 283 (482)
Q Consensus 234 ~~~~~~~l~~L~~ll----~~-~~~~v~~---~a~~~L~~l~~~~~----------------------~~~~~l~~~~~i 283 (482)
..++ .+++.+...+ .. .+++.+. ..+.+|+.+...-. .... -+...++
T Consensus 608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 685 (963)
T 2x19_B 608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVV-VVLQQVF 685 (963)
T ss_dssp HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHH-HHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchH-HHHHHHH
Confidence 2222 3344443333 22 2444433 34444544442110 0011 1122355
Q ss_pred HHHHHHhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHH----Hhc-CChhHHHHHHHHHHHhhc--CC
Q 043116 284 RYLLGLLIH-NHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNL----LQD-AEFGTKKEAAWVISNATS--GG 355 (482)
Q Consensus 284 ~~L~~ll~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l----l~~-~~~~~~~~a~~aL~~l~~--~~ 355 (482)
+.+..++.. ..+..+...++.++..++....+... .+++.++.. +.. +.+ ..++.+..++. ..
T Consensus 686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~ 756 (963)
T 2x19_B 686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----PMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFAH 756 (963)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----GGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----ccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCC
Confidence 555555543 22668889999998887642111111 123333333 222 222 23333333332 11
Q ss_pred CH---HHHHHHHHcCChHHHHhcCC---CCCHHHHHHHHHHHHHHHHhchhccccCCCCcccH-HHHHHHHhchHHHHHH
Q 043116 356 TH---EQIKHLVREGCVKPLCDLLP---CPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQ-YAQLVEEAEGLEKIEN 428 (482)
Q Consensus 356 ~~---~~~~~l~~~~~l~~L~~ll~---~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~l~~ 428 (482)
.+ .....+.+ ..+..+..++. ..+++++...+..+..++......-.. ... +... ++.+..
T Consensus 757 ~~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~-----~~~~~~~i------~~~~~~ 824 (963)
T 2x19_B 757 EPAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC-----ERLDVKAV------FQCAVL 824 (963)
T ss_dssp CTTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC-----TTSCHHHH------HHHHHH
T ss_pred CcchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC-----CcccHHHH------HHHHHH
Confidence 11 11111111 12333333322 246899999999999999876654211 111 2222 344444
Q ss_pred hhcCCCHHHHHHHHHHHHHhcCC
Q 043116 429 LQSHDNNDIHEMSVKILETYWCG 451 (482)
Q Consensus 429 l~~~~~~~v~~~a~~~l~~~~~~ 451 (482)
...+++..+.+.+...+..++..
T Consensus 825 ~l~~~~~~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 825 ALKFPEAPTVKASCGFFTELLPR 847 (963)
T ss_dssp HTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HcCCCCHHHHHHHHHHHHHHHhc
Confidence 55688899999999999988764
No 96
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.99 E-value=0.002 Score=68.36 Aligned_cols=388 Identities=6% Similarity=0.050 Sum_probs=202.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC-----CCChHHHHHHHHHHHHHhCCChHhHHHHHhCC
Q 043116 39 DDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMR-----EDYPQLQFEAARALTNIASGTSENTKVAIDHG 113 (482)
Q Consensus 39 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 113 (482)
.+...+..+++++..++.+. .+....-.-..+++.|+.++.+ +. ..++..++|+++.++.--... ..+++ .
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~-~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k-~~v~~t~~~~lGry~~wl~~~-~~~L~-~ 540 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTM-SEDTEKRFVVTVIKDLLDLCVKKRGKDNK-AVVASDIMYVVGQYPRFLKAH-WNFLR-T 540 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSS-CHHHHHHHHHHHHHHHHHHHHHCCSHHHH-HHHHHHHHHHHHTCHHHHHHC-HHHHH-H
T ss_pred CCHHHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHHHHhhhccccCcch-HHHHHHHHHHHHHHHHHHhcc-HHHHH-H
Confidence 46788889999999998764 2221222233467788888763 22 345566789999887521111 11221 3
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHH------hCChHHHHHHHc---chhhhhHHHHHHHHHHHhh
Q 043116 114 AVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLS------QGALIPLLAELN---EHAKLSMLRTATWTLSNFC 184 (482)
Q Consensus 114 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~L~ 184 (482)
+++.|.+.+.++++.++..|++++.++|. .++..+.. ...++.++..+. ..-+..-...+..++..+.
T Consensus 541 vl~~L~~~l~~~~~~v~~~A~~al~~l~~---~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi 617 (1023)
T 4hat_C 541 VILKLFEFMHETHEGVQDMACDTFIKIVQ---KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII 617 (1023)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHH---HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHH---HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 56667777777889999999999999994 34444432 112444444332 2234455567888888888
Q ss_pred cCCCCCC--hhhhhhHHHHHHH----Hhc--cCC---------hhHHHHHHHHHHHhccCCcH-HHHHHHHhCcHHHHHH
Q 043116 185 RGKPQPP--FNQIRPALRVLAQ----LIR--SND---------EKVLTDACRALAYLADGTND-KIQAVIEAGVCPRLVK 246 (482)
Q Consensus 185 ~~~~~~~--~~~~~~~~~~L~~----ll~--~~~---------~~~~~~~l~~L~~l~~~~~~-~~~~~~~~~~l~~L~~ 246 (482)
...+... ......+++.+.. +.. +.+ .......++++..++..-.. ....+ . .+.+.++.
T Consensus 618 ~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~-~-~i~~~~l~ 695 (1023)
T 4hat_C 618 SEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQL-G-HIYYNMLQ 695 (1023)
T ss_dssp TTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHH-H-HHHHHHHH
T ss_pred HhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHH-H-HHHHHHHH
Confidence 8764322 1122233333222 221 111 12334444544444421110 00000 0 11122221
Q ss_pred hhC-----------------CCCh------hhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhc----CC----Cc
Q 043116 247 LLG-----------------HRSR------LVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLI----HN----HN 295 (482)
Q Consensus 247 ll~-----------------~~~~------~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~----~~----~~ 295 (482)
+.+ ...+ .+++.+++.+.......+.. + .+...+++.+++.+- .. .+
T Consensus 696 ~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~-~-~~~~~~~~~l~~~vl~dY~~~~~~~r~ 773 (1023)
T 4hat_C 696 LYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNL-D-DVVKVLVEPLLNAVLEDYMNNVPDARD 773 (1023)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCH-H-HHHHHTHHHHHHHHHHHHHHSCGGGCC
T ss_pred HHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCH-H-HHHHHhHHHHHHHHHHHHHhCChhhcc
Confidence 110 0111 23344444444444322211 1 122335555544331 11 13
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc---CChhHHHHHHHHHHHhhcCCC-------HHHHHHHHH
Q 043116 296 KSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQD---AEFGTKKEAAWVISNATSGGT-------HEQIKHLVR 365 (482)
Q Consensus 296 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~---~~~~~~~~a~~aL~~l~~~~~-------~~~~~~l~~ 365 (482)
+.+-.-..-.+..+.....+.+..+++ .++..-++++.. +.|+.+..-...+..+..++- ++..+.
T Consensus 774 ~~vL~l~s~iv~~~~~~~~~~~~~il~-~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~--- 849 (1023)
T 4hat_C 774 AEVLNCMTTVVEKVGHMIPQGVILILQ-SVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKL--- 849 (1023)
T ss_dssp HHHHHHHHHHHHHHGGGCHHHHHHHHH-HHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHH---
Confidence 444444444444444333344444444 355555666653 578888887777777765432 222222
Q ss_pred cCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHh----hcCCCHHHHHHH
Q 043116 366 EGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENL----QSHDNNDIHEMS 441 (482)
Q Consensus 366 ~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l----~~~~~~~v~~~a 441 (482)
+++.++-..+++++++...+++.+..++....... ...+...|-+.-..+.+.++ .++...-..+.-
T Consensus 850 --~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~-------~~~~~~~f~~~~~~~~~~~~~~v~td~~h~~~f~~~ 920 (1023)
T 4hat_C 850 --FVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMG-------NVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQ 920 (1023)
T ss_dssp --HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHC-------SSHHHHHHHHHHHHHHHHHHHHHHHSSSCGGGHHHH
T ss_pred --HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHHHHHHHHHHHhCchhhhhHHHH
Confidence 45566667899999999999999999987665421 12345555555556665554 344555555666
Q ss_pred HHHHHHhcC
Q 043116 442 VKILETYWC 450 (482)
Q Consensus 442 ~~~l~~~~~ 450 (482)
..++..+|.
T Consensus 921 ~~~l~~l~~ 929 (1023)
T 4hat_C 921 ALLLMKLIS 929 (1023)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666554
No 97
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.81 E-value=0.0014 Score=69.45 Aligned_cols=307 Identities=8% Similarity=-0.015 Sum_probs=167.5
Q ss_pred CCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh--hhHHHHHHhCChH
Q 043116 81 REDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSS--RCRDFVLSQGALI 158 (482)
Q Consensus 81 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~ 158 (482)
+.+ ++++..++.|+......- ....+.+.+.++.+..++.+ +.++..|+.+|..+..... ..+..++..=.+.
T Consensus 204 ~~~-~~l~~~~L~~l~s~i~wi--~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~ 278 (980)
T 3ibv_A 204 AKN-YGTVGLCLQVYAQWVSWI--NINLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLN 278 (980)
T ss_dssp TTC-HHHHHHHHHHHHHHTTTS--CHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred cCC-HHHHHHHHHHHHHHHhhc--CHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHH
Confidence 356 889999999999998732 23556667788888888864 8999999999999984432 2222222210011
Q ss_pred HHHHHHcc-hhhhhHHHHHHHHH-------HHhhcCCCC-CC-------hhhhhhHHHHHHHHhccCChhHHHHHHHHHH
Q 043116 159 PLLAELNE-HAKLSMLRTATWTL-------SNFCRGKPQ-PP-------FNQIRPALRVLAQLIRSNDEKVLTDACRALA 222 (482)
Q Consensus 159 ~l~~~l~~-~~~~~~~~~a~~~L-------~~L~~~~~~-~~-------~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~ 222 (482)
..+..+.. ..|.+..+..+..+ ..+ ...+. .. .....++++.++.++.+++.++...++..+.
T Consensus 279 ~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~ 357 (980)
T 3ibv_A 279 LFFSKSQEQSTDPNFDEHVAKLINAQGVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLS 357 (980)
T ss_dssp HHHCC-----CCHHHHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 11111111 34555544333333 233 22221 11 1334678888999998888888777766665
Q ss_pred HhccC-----C----cHHHHHHHHhCcHHHHHHhhCCCCh----------------hhHHHHHHHHhHhhcCChhhHHHH
Q 043116 223 YLADG-----T----NDKIQAVIEAGVCPRLVKLLGHRSR----------------LVLTAALRTIGNIVTGDDFQTQCI 277 (482)
Q Consensus 223 ~l~~~-----~----~~~~~~~~~~~~l~~L~~ll~~~~~----------------~v~~~a~~~L~~l~~~~~~~~~~l 277 (482)
.+... . ......++ ..+++.++.-+..++. +.|+...-.+..++.-.+......
T Consensus 358 ~~l~~~~~~~~~~~~~~~~~~~l-~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~ 436 (980)
T 3ibv_A 358 DLLVSLRKESSSKELSASLKEFL-KSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSY 436 (980)
T ss_dssp HHHHHHHHHTTSCCCCHHHHHHH-HHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHhccccccccHHHHHHH-HHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 54421 0 11111111 1344455555543211 234443322222222222221110
Q ss_pred HhcCchHHHHHHhc---CCCchhHHHHHHHHHHHHhcCCHHHHHHHH-HcC----ChHHHHHHHh-----cCChhHHHHH
Q 043116 278 INCGALRYLLGLLI---HNHNKSIKKEVCWIISNITAGNREQIQAVI-DAG----LIGPIVNLLQ-----DAEFGTKKEA 344 (482)
Q Consensus 278 ~~~~~i~~L~~ll~---~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~----~i~~L~~ll~-----~~~~~~~~~a 344 (482)
.-.-+.+.+...+. +. +....+.+.++++.++.+......... ... +++.+..++. ..++.++..+
T Consensus 437 ~~~~i~~~l~~~l~~~~~~-~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~ 515 (980)
T 3ibv_A 437 MYSAITSSLSTAATLSPEN-SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLY 515 (980)
T ss_dssp HHHHHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 00011222223332 22 566788899999998875332111110 011 3444555554 5689999999
Q ss_pred HHHHHHhhcCC--CHHHHHHHHHcCChHHHHh--cCCCCCHHHHHHHHHHHHHHHHhchh
Q 043116 345 AWVISNATSGG--THEQIKHLVREGCVKPLCD--LLPCPDPQIVTVCLIGLENILKVGEA 400 (482)
Q Consensus 345 ~~aL~~l~~~~--~~~~~~~l~~~~~l~~L~~--ll~~~~~~v~~~~l~~L~~l~~~~~~ 400 (482)
+++++..+..- .++... .+++.+++ .+.+++++++.+|..++.++++.+..
T Consensus 516 ~~~l~rys~~~~~~~~~l~-----~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 516 MEILVRYASFFDYESAAIP-----ALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp HHHHHHTGGGGGTCCTTHH-----HHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCchhHH-----HHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence 99999987642 222222 24566666 66678889999999999999987665
No 98
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.64 E-value=0.00048 Score=72.88 Aligned_cols=304 Identities=9% Similarity=0.035 Sum_probs=163.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCC--hHhHHHHHhCCCh
Q 043116 38 SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGT--SENTKVAIDHGAV 115 (482)
Q Consensus 38 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~g~i 115 (482)
+.++.+...++.++......- ....+++.++++.+.+++.+ ++++..|+.||..+.... ++.+..++..=.+
T Consensus 204 ~~~~~l~~~~L~~l~s~i~wi---~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L 277 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVSWI---NINLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNL 277 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTTTS---CHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhc---CHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence 467888889999999998753 36777788899999998874 689999999999988743 3333333322011
Q ss_pred HHHHHhhC--CCCHHHHHHHHHHHHHhh------CCCh-----hhHHHH--HHhCChHHHHHHHcchhhhhHHHHHHHHH
Q 043116 116 PIFVKLLA--SPSDDVREQAVWALGNVA------GDSS-----RCRDFV--LSQGALIPLLAELNEHAKLSMLRTATWTL 180 (482)
Q Consensus 116 ~~L~~ll~--~~~~~~~~~a~~~L~~l~------~~~~-----~~~~~~--~~~~~i~~l~~~l~~~~~~~~~~~a~~~L 180 (482)
...+..+. ..|.+..+..++.+..++ ...+ +.+... .-.+.++.++... .+++.++...++..+
T Consensus 278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~Fw 356 (980)
T 3ibv_A 278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPFL 356 (980)
T ss_dssp HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence 11122222 456666554444333222 1111 111100 1124677888888 445556666665555
Q ss_pred HHhhcC----CC-CCChhhh----hhHHHHHHHHhccC-----Ch-----------hHHHHHHHHHHHhccCCcHHHHH-
Q 043116 181 SNFCRG----KP-QPPFNQI----RPALRVLAQLIRSN-----DE-----------KVLTDACRALAYLADGTNDKIQA- 234 (482)
Q Consensus 181 ~~L~~~----~~-~~~~~~~----~~~~~~L~~ll~~~-----~~-----------~~~~~~l~~L~~l~~~~~~~~~~- 234 (482)
..+... .. ....... ..+++.++.-+.-+ +. +.|......+..++.-.++..-.
T Consensus 357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~ 436 (980)
T 3ibv_A 357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSY 436 (980)
T ss_dssp HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 554432 11 1111222 33444444433311 11 23333332222222212211111
Q ss_pred HHHhCcHHHHHHhhC---CCChhhHHHHHHHHhHhhcCChhhHHHHH-----hcCchHHHHHHhc-----CCCchhHHHH
Q 043116 235 VIEAGVCPRLVKLLG---HRSRLVLTAALRTIGNIVTGDDFQTQCII-----NCGALRYLLGLLI-----HNHNKSIKKE 301 (482)
Q Consensus 235 ~~~~~~l~~L~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~~l~-----~~~~i~~L~~ll~-----~~~~~~v~~~ 301 (482)
+.+ -+.+.+...+. +.++..++.++.+|+.++.+.......+. -..+++.+..+++ .+ ++.|+..
T Consensus 437 ~~~-~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~~ 514 (980)
T 3ibv_A 437 MYS-AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQLL 514 (980)
T ss_dssp HHH-HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHHH
T ss_pred HHH-HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHHH
Confidence 111 11122223332 24577899999999999876432111110 0124455666655 45 8999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh------cCChhHHHHHHHHHHHhhcCCC
Q 043116 302 VCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ------DAEFGTKKEAAWVISNATSGGT 356 (482)
Q Consensus 302 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~------~~~~~~~~~a~~aL~~l~~~~~ 356 (482)
++++++..+.--.. ....++.++..+- ++++.++..|+.++.+++..+.
T Consensus 515 ~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~ 569 (980)
T 3ibv_A 515 YMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK 569 (980)
T ss_dssp HHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence 99999999862111 1235555555544 4567899999999999987543
No 99
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.59 E-value=0.033 Score=49.73 Aligned_cols=200 Identities=13% Similarity=0.107 Sum_probs=149.4
Q ss_pred HHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhh------hhHHHHHHHHhccCChhHHHHHHHHHHH
Q 043116 150 FVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQI------RPALRVLAQLIRSNDEKVLTDACRALAY 223 (482)
Q Consensus 150 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~------~~~~~~L~~ll~~~~~~~~~~~l~~L~~ 223 (482)
.+...+.+..++..+ ..-+-+.+..++.++.++.+.......... ..++..|+..-. ++++...+-..|+.
T Consensus 73 ei~~~dll~~Li~~l-~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRe 149 (341)
T 1upk_A 73 ELYNSGLLSTLVADL-QLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHSHHHHHHHTG-GGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhc-ccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHH
Confidence 345567777888888 677788899999999999998743332221 234444444333 45666666666666
Q ss_pred hccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcC---chHHHHHHhcCCCchhHHH
Q 043116 224 LADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCG---ALRYLLGLLIHNHNKSIKK 300 (482)
Q Consensus 224 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~---~i~~L~~ll~~~~~~~v~~ 300 (482)
...+ +.....+...+.+..+...+..++-++...|..++..+...+.......+..+ ++...-++|.++ +.-+|+
T Consensus 150 cir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTkR 227 (341)
T 1upk_A 150 CIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKR 227 (341)
T ss_dssp HHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHH
T ss_pred HHHh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhHH
Confidence 6654 44666777778888999999999999999999999999887776665565543 567788899998 999999
Q ss_pred HHHHHHHHHhcC--CHHHHHHHH-HcCChHHHHHHHhcCChhHHHHHHHHHHHhhcC
Q 043116 301 EVCWIISNITAG--NREQIQAVI-DAGLIGPIVNLLQDAEFGTKKEAAWVISNATSG 354 (482)
Q Consensus 301 ~a~~~L~nl~~~--~~~~~~~l~-~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~ 354 (482)
.+...|+.+... +...+...+ +..-+..++.+|++.+..++.+|..++.-++.+
T Consensus 228 QSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 228 QSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 999999999873 444444444 455688999999999999999999999888764
No 100
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.58 E-value=0.0086 Score=50.98 Aligned_cols=185 Identities=9% Similarity=0.111 Sum_probs=130.2
Q ss_pred ChhHHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHh-------hCCCC----hh-hHHHHHHHHhHhhcCChhhHHH
Q 043116 210 DEKVLTDACRALAYLADGTNDKIQAVIEA-GVCPRLVKL-------LGHRS----RL-VLTAALRTIGNIVTGDDFQTQC 276 (482)
Q Consensus 210 ~~~~~~~~l~~L~~l~~~~~~~~~~~~~~-~~l~~L~~l-------l~~~~----~~-v~~~a~~~L~~l~~~~~~~~~~ 276 (482)
+++.++.|+..|+.=-+..++..-.++.+ |.+..+++= ++.+. .. -..+|+..+..++. +++....
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhH
Confidence 56678888888877665555555566665 666665432 22222 11 22445555556665 7777788
Q ss_pred HHhcCchHHHHHHhcCCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHh
Q 043116 277 IINCGALRYLLGLLIHNH----NKSIKKEVCWIISNITA-GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNA 351 (482)
Q Consensus 277 l~~~~~i~~L~~ll~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l 351 (482)
++++++.-.|..+|+... -+.+|-.+.++++.+.. ++++.+..+++.+++|..++.++.++.-.|.-|...+..+
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 999998888888886642 24688889999999987 7888889999999999999999999999999999988888
Q ss_pred hcCCCHHHHHHHHH--------cCChHHHHh-cCCCCCHHHHHHHHHHHHHHHHh
Q 043116 352 TSGGTHEQIKHLVR--------EGCVKPLCD-LLPCPDPQIVTVCLIGLENILKV 397 (482)
Q Consensus 352 ~~~~~~~~~~~l~~--------~~~l~~L~~-ll~~~~~~v~~~~l~~L~~l~~~ 397 (482)
... .....++.. ..++..++. +.+++++.+.++++.+..++.+.
T Consensus 173 L~d--d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 173 LLD--DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HHS--HHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred hcc--chhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 763 233222221 123444333 55678889999999888888754
No 101
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.49 E-value=0.049 Score=57.83 Aligned_cols=357 Identities=10% Similarity=0.106 Sum_probs=185.6
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCC--------Cc---HHHHHhcC---CHHHHHHhhcCCCChHHHHHHHH
Q 043116 28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRN--------SP---IEKVIQSG---VVPRFVEFLMREDYPQLQFEAAR 93 (482)
Q Consensus 28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~--------~~---~~~~~~~g---~~~~L~~ll~~~~~~~v~~~a~~ 93 (482)
.++.+++.+++ ++......+.+|..+...-.. .. .+..+... +++.+...++...++++...++.
T Consensus 151 fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~ 229 (1073)
T 3gjx_A 151 FISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLE 229 (1073)
T ss_dssp HHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 45555555542 334445566666666544100 00 11112221 23333344444444888888999
Q ss_pred HHHHHhCCChHhHHHHHhCCChHHH-HHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHHhCChHHHHH----HH---
Q 043116 94 ALTNIASGTSENTKVAIDHGAVPIF-VKLLASPSDDVREQAVWALGNVAGDS-SRCRDFVLSQGALIPLLA----EL--- 164 (482)
Q Consensus 94 ~L~~l~~~~~~~~~~~~~~g~i~~L-~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~----~l--- 164 (482)
++..+..-- ....+++.+.++.+ ..++ .++.++..|+.||..+.... +.+.+.+.. ....++. ++
T Consensus 230 ~L~~~~sWI--~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~--lf~~~~~~i~~ilp~~ 303 (1073)
T 3gjx_A 230 TLLRFLNWI--PLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFET--LFTLTMMQLKQMLPLN 303 (1073)
T ss_dssp HHHHHTTTS--CTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHHH--HHHHHHHHHHHHSCTT
T ss_pred HHHHHHHhc--CHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHHH--HHHHHHHHHHHhcCCc
Confidence 999998732 23567788888888 4666 56789999999999988532 333232221 1222221 11
Q ss_pred ---------cchhhhhHHHHHHHHHHHhhcCC------CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccC--
Q 043116 165 ---------NEHAKLSMLRTATWTLSNFCRGK------PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADG-- 227 (482)
Q Consensus 165 ---------~~~~~~~~~~~a~~~L~~L~~~~------~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~-- 227 (482)
....|++.....+.++..+.... +.........++..++.+...++.++...++..-..+...
T Consensus 304 ~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~ 383 (1073)
T 3gjx_A 304 TNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELY 383 (1073)
T ss_dssp SCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 12224455555566665544332 0001112234455566666677888877776664444321
Q ss_pred --C------c-----------HHHHHHHH---hCcHHHHHHhhCCCCh----------hhHH------------HHHHHH
Q 043116 228 --T------N-----------DKIQAVIE---AGVCPRLVKLLGHRSR----------LVLT------------AALRTI 263 (482)
Q Consensus 228 --~------~-----------~~~~~~~~---~~~l~~L~~ll~~~~~----------~v~~------------~a~~~L 263 (482)
. . .....++. ..+...++..|..|++ .+|. ..-.+|
T Consensus 384 ~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L 463 (1073)
T 3gjx_A 384 RESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETL 463 (1073)
T ss_dssp HHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHH
T ss_pred hhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHH
Confidence 0 0 01111111 1223333444443321 0000 011122
Q ss_pred hHhhcCChhhHHHHHhcCchHHHHHHhcCC-CchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcC-----
Q 043116 264 GNIVTGDDFQTQCIINCGALRYLLGLLIHN-HNKSIKKEVCWIISNITAG-NREQIQAVIDAGLIGPIVNLLQDA----- 336 (482)
Q Consensus 264 ~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~----- 336 (482)
..++.-....... -+.+.+.+.+..+ .+......++|+++.++.. .++.-..++. .+++.|+.+....
T Consensus 464 ~~lt~l~~~~~~~----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp-~vi~~Ll~L~e~~~~kd~ 538 (1073)
T 3gjx_A 464 VYLTHLDYVDTEI----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV-TVIKDLLGLCEQKRGKDN 538 (1073)
T ss_dssp HHHHHHCHHHHHH----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHHHHSCSHHH
T ss_pred HHHhcCCHHHHHH----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH-HHHHHHhcccccccccch
Confidence 2222111111111 1334444444432 2577889999999999863 2221222222 3677777776543
Q ss_pred ChhHHHHHHHHHHHhhcC--CCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhc
Q 043116 337 EFGTKKEAAWVISNATSG--GTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAE 401 (482)
Q Consensus 337 ~~~~~~~a~~aL~~l~~~--~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~ 401 (482)
...++...+++++..... .+++.... ++..|.+.+.++++.++..|..++.++...+...
T Consensus 539 k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~ 600 (1073)
T 3gjx_A 539 KAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRH 600 (1073)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred hHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 123455566777766442 13333333 6888888889999999999999999999887763
No 102
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.47 E-value=0.05 Score=57.71 Aligned_cols=305 Identities=12% Similarity=0.147 Sum_probs=160.9
Q ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHH-HHhhcCCCChHHHHHHHHHHHHHhCCC-hHhHH
Q 043116 31 TMVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRF-VEFLMREDYPQLQFEAARALTNIASGT-SENTK 107 (482)
Q Consensus 31 ~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L-~~ll~~~~~~~v~~~a~~~L~~l~~~~-~~~~~ 107 (482)
.+.+.+. +.++.+...++.+|..+.+.- ....+++.++++.+ ..++. + ++++..|+.||..+.... ++...
T Consensus 210 ll~~iL~~~~~~~lv~~~L~~L~~~~sWI---~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~ 283 (1073)
T 3gjx_A 210 LCQFVMENSQNAPLVHATLETLLRFLNWI---PLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEE 283 (1073)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHTTTS---CTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHH
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHhc---CHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHH
Confidence 3334443 567888888899999998764 36678888999988 46663 4 789999999999987632 22222
Q ss_pred HHHh--CCChHHHHHhhC-------------CCCHHHHHHHHHHHHHhhCCChhhHHHHHHh-C-------ChHHHHHHH
Q 043116 108 VAID--HGAVPIFVKLLA-------------SPSDDVREQAVWALGNVAGDSSRCRDFVLSQ-G-------ALIPLLAEL 164 (482)
Q Consensus 108 ~~~~--~g~i~~L~~ll~-------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~-------~i~~l~~~l 164 (482)
.+.. .+++..+..++. ..+.+....-...+..+... ....+... + ++..++.+-
T Consensus 284 ~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~---~~~lIe~~p~~~~~l~~~l~~ll~~s 360 (1073)
T 3gjx_A 284 QFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKE---HGQLLEKRLNLREALMEALHYMLLVS 360 (1073)
T ss_dssp HHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHH---HHHHHHHCGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHH---HHHHHhcCccchHHHHHHHHHHHHHh
Confidence 2211 112222222221 12234444444455444311 11122111 1 122233332
Q ss_pred cchhhhhHHHHHHHHHHHhhcC----CCC----C-------------ChhhhhhHHHHHHHH----hccCC---------
Q 043116 165 NEHAKLSMLRTATWTLSNFCRG----KPQ----P-------------PFNQIRPALRVLAQL----IRSND--------- 210 (482)
Q Consensus 165 ~~~~~~~~~~~a~~~L~~L~~~----~~~----~-------------~~~~~~~~~~~L~~l----l~~~~--------- 210 (482)
..++.++...+......|... .+. . .......++..|... +..++
T Consensus 361 -~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ 439 (1073)
T 3gjx_A 361 -EVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQ 439 (1073)
T ss_dssp -TCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSS
T ss_pred -CCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCccc
Confidence 456777777766655544431 110 0 111123344443333 22111
Q ss_pred ----------hh---HHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCC--CChhhHHHHHHHHhHhhcCChhh-H
Q 043116 211 ----------EK---VLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH--RSRLVLTAALRTIGNIVTGDDFQ-T 274 (482)
Q Consensus 211 ----------~~---~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~-~ 274 (482)
.+ .....-.+|..++.-....... -+++.+...+.. .++.....++|+++.++..-.+. -
T Consensus 440 ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E 515 (1073)
T 3gjx_A 440 GEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEI----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDE 515 (1073)
T ss_dssp SCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHH
T ss_pred chHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccc
Confidence 00 1111112223333111111111 123444444443 45788999999999998543321 2
Q ss_pred HHHHhcCchHHHHHHhcCCC----chhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHH
Q 043116 275 QCIINCGALRYLLGLLIHNH----NKSIKKEVCWIISNITA---GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWV 347 (482)
Q Consensus 275 ~~l~~~~~i~~L~~ll~~~~----~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~a 347 (482)
+.++ ..+++.|+.+.++.. ...++...+|+++.... ..++. ++ .++..+++.+.+.++.++..|+.+
T Consensus 516 ~~~L-p~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~----L~-~vl~~L~~~m~~~~~~vq~aA~~a 589 (1073)
T 3gjx_A 516 KRFL-VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKF----LK-TVVNKLFEFMHETHDGVQDMACDT 589 (1073)
T ss_dssp HHHH-HHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHH----HH-HHHHHHHHHTTCCSTTHHHHHHHH
T ss_pred cchH-HHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHH----HH-HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1121 246777777776542 23355666788888765 22332 22 266777788888899999999999
Q ss_pred HHHhhcCC
Q 043116 348 ISNATSGG 355 (482)
Q Consensus 348 L~~l~~~~ 355 (482)
+..++..+
T Consensus 590 f~~i~~~C 597 (1073)
T 3gjx_A 590 FIKIAQKC 597 (1073)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99998754
No 103
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.37 E-value=0.0054 Score=53.54 Aligned_cols=180 Identities=14% Similarity=0.059 Sum_probs=117.1
Q ss_pred HHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC----ChhhHHHH
Q 043116 202 LAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTG----DDFQTQCI 277 (482)
Q Consensus 202 L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~~~l 277 (482)
+...+.+.|..-+..++..|.......++......+ .+++.+.-.+.+.+..+...++.+|..+... .......-
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lD-ll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~e 129 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEE 129 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHH-HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 344455567766777777666655333322111111 0222222233477888888888888776531 11111110
Q ss_pred HhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCC
Q 043116 278 INCGALRYLLGLLIHNHNKSIKKEVCWIISNITA-GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGT 356 (482)
Q Consensus 278 ~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~ 356 (482)
-.-++|.|+.-+-++ ...+|..+-.++..++. ..+. .+++.+++-+.+.+..++..++..+..+.....
T Consensus 130 -a~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G 199 (266)
T 2of3_A 130 -VSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITNAG 199 (266)
T ss_dssp -HHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence 123689999999888 78899888887777654 2233 356667777789999999999999998865221
Q ss_pred HHHHHHHHHcCCh---HHHHhcCCCCCHHHHHHHHHHHHHHHHhc
Q 043116 357 HEQIKHLVREGCV---KPLCDLLPCPDPQIVTVCLIGLENILKVG 398 (482)
Q Consensus 357 ~~~~~~l~~~~~l---~~L~~ll~~~~~~v~~~~l~~L~~l~~~~ 398 (482)
.. ....+ +.+..++.++|..|+..|+.++..++...
T Consensus 200 ~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 200 IS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp SG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred CC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 11 23468 99999999999999999999999888653
No 104
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.35 E-value=0.0084 Score=52.31 Aligned_cols=178 Identities=12% Similarity=0.043 Sum_probs=118.2
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHH---cchhhhhHHHHHHHHHHHhh----cCCC
Q 043116 116 PIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAEL---NEHAKLSMLRTATWTLSNFC----RGKP 188 (482)
Q Consensus 116 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l---~~~~~~~~~~~a~~~L~~L~----~~~~ 188 (482)
+.+...+.+.+..-+..++..|.......+. .+.. .+..++.-+ ..+++..+...++.+|..+. ....
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR---SLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 4455555566767666777766665533321 1111 222333322 12456667777776666654 2222
Q ss_pred CCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 043116 189 QPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVT 268 (482)
Q Consensus 189 ~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 268 (482)
........-++|.|+.-+.++.+.++..+-.++..+....+. ..+++.++..+++.++..+..++..++.+..
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 222223467899999999999999999888888766632111 1356788888999999999999999999876
Q ss_pred CChhhHHHHHhcCch---HHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 043116 269 GDDFQTQCIINCGAL---RYLLGLLIHNHNKSIKKEVCWIISNITA 311 (482)
Q Consensus 269 ~~~~~~~~l~~~~~i---~~L~~ll~~~~~~~v~~~a~~~L~nl~~ 311 (482)
..... ....+ +.+.+++.+. +..||..|..++..+-.
T Consensus 197 ~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 197 NAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred hcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 33221 23567 9999999998 99999999999987765
No 105
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.34 E-value=0.015 Score=51.92 Aligned_cols=207 Identities=12% Similarity=0.064 Sum_probs=151.1
Q ss_pred HHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCh----hhHHHHHh-cCchHHHHHHhcCCCchhHHHHHHHHHH
Q 043116 233 QAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDD----FQTQCIIN-CGALRYLLGLLIHNHNKSIKKEVCWIIS 307 (482)
Q Consensus 233 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~----~~~~~l~~-~~~i~~L~~ll~~~~~~~v~~~a~~~L~ 307 (482)
+.++..+.+..|+..|..-+-+.|..+..+..++.+... .....+.+ ..++..|+...+ ++++.-.+...|.
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe---~~diAl~~G~mLR 148 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIMLR 148 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc---cchhHhHHHHHHH
Confidence 346667889999999988888999999999999987543 33444543 234444444444 4456666666666
Q ss_pred HHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHc---CChHHHHhcCCCCCHHHH
Q 043116 308 NITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVRE---GCVKPLCDLLPCPDPQIV 384 (482)
Q Consensus 308 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~---~~l~~L~~ll~~~~~~v~ 384 (482)
.++.+ ....+.++..+.+..+.++++.++.++...|..++..+... .+.....++.. .++..+..++.+++.=++
T Consensus 149 ecir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~-Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTk 226 (341)
T 1upk_A 149 ECIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTR-HKLLSAEFLEQHYDRFFSEYEKLLHSENYVTK 226 (341)
T ss_dssp HHHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhc-cHHHHHHHHHHhHHHHHHHHHHHhcCCcchhH
Confidence 66653 55567788888899999999999999999999999999876 44444444443 357778889999999999
Q ss_pred HHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 043116 385 TVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGRV 453 (482)
Q Consensus 385 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 453 (482)
..+++.|+.++-...+.. .....+.+..-+..+-.++.+++..++-.|-.+..-+.....
T Consensus 227 RQSlKLLgelLldr~N~~---------vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 227 RQSLKLLGELLLDRHNFT---------IMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp HHHHHHHHHHHHSGGGHH---------HHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhCchHHH---------HHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence 999999999997654432 123334444567778888999999999999988876655433
No 106
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.32 E-value=0.00036 Score=66.10 Aligned_cols=249 Identities=16% Similarity=0.112 Sum_probs=157.4
Q ss_pred hhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHH-HHhcCCHHHHHHhhc---------CCCChHHHHHHH
Q 043116 23 QSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEK-VIQSGVVPRFVEFLM---------REDYPQLQFEAA 92 (482)
Q Consensus 23 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~g~~~~L~~ll~---------~~~~~~v~~~a~ 92 (482)
+|..+....|+..|-++..+++.-|+..|+.+....+...... ....++.-.++.++. ++-=..||+.|+
T Consensus 170 eWPfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaA 249 (800)
T 3oc3_A 170 ENVLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAA 249 (800)
T ss_dssp CSGGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHH
Confidence 3444467788888889999999999999999987642110000 001133333333332 111146999999
Q ss_pred HHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhH
Q 043116 93 RALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSM 172 (482)
Q Consensus 93 ~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~ 172 (482)
.+|+.+ .+-+.. ..++..++..+..+..+++..++-.|..+. +-..+ + .++++.++.-| .+.|.++
T Consensus 250 QtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~-L--d~Vv~aVL~GL-~D~DDDV 315 (800)
T 3oc3_A 250 YLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED-K--DGLCRKLVSLL-SSPDEDI 315 (800)
T ss_dssp HHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC-H--HHHHHHHHHHT-TCSSHHH
T ss_pred HHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH-H--HHHHHHHHhhc-CCcccHH
Confidence 999999 644443 355666666667888999999999998882 11111 1 23566777777 6678899
Q ss_pred HHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCC--hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCC
Q 043116 173 LRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSND--EKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH 250 (482)
Q Consensus 173 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~--~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 250 (482)
+..|+.+|.-++ .......++..+...|.+-| ......+...|+.++..+.. ...+...+|.|.+++.+
T Consensus 316 RAVAAetLiPIA------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRH 386 (800)
T 3oc3_A 316 KLLSAELLCHFP------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTS 386 (800)
T ss_dssp HHHHHHHHTTSC------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTC
T ss_pred HHHHHHHhhhhc------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcC
Confidence 999999999887 22345677777887776543 22334444555555533321 01123678999999999
Q ss_pred CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHH-HHhcCCCchhHHHHHHHHH
Q 043116 251 RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLL-GLLIHNHNKSIKKEVCWII 306 (482)
Q Consensus 251 ~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~-~ll~~~~~~~v~~~a~~~L 306 (482)
+-.+||.+++.++..+. ... ++..+. .+|-.. +.+++..+..+-
T Consensus 387 tITSVR~AVL~TL~tfL--~~~---------~LRLIFQNILLE~-neeIl~lS~~VW 431 (800)
T 3oc3_A 387 PVPEVRTSILNMVKNLS--EES---------IDFLVAEVVLIEE-KDEIREMAIKLL 431 (800)
T ss_dssp SSHHHHHHHHHHTTTCC--CHH---------HHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH--hhh---------HHHHHHHHHHhCC-cHHHHHHHHHHH
Confidence 99999999999998887 222 222322 333344 666766555443
No 107
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.016 Score=51.67 Aligned_cols=191 Identities=10% Similarity=0.088 Sum_probs=126.0
Q ss_pred HHHhhCCCChhhHHHHHHHHhHhhcCChhhH--HHHH--hcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCC------
Q 043116 244 LVKLLGHRSRLVLTAALRTIGNIVTGDDFQT--QCII--NCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGN------ 313 (482)
Q Consensus 244 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--~~l~--~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~------ 313 (482)
+-.-|.+.++..|..++..+..+....+... .... -....+.+.+.+.+. +..+...++.++..++...
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 5577899999999999999988876443221 1111 113456677788777 9999999999999887521
Q ss_pred HHHHHHHHHcCChHHHHHH-HhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHH
Q 043116 314 REQIQAVIDAGLIGPIVNL-LQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLE 392 (482)
Q Consensus 314 ~~~~~~l~~~~~i~~L~~l-l~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~ 392 (482)
.......+ ..+++.|++= +.+....++..+..++..++....+.. .+++.+...+++.+|+++..++..|.
T Consensus 93 ~~~~~~~~-~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-------~~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 93 NAHNITLI-STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-------QSVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp HHHHHHHH-HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-------HHHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred cchhHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-------HHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 11111122 2466777653 667778899888888887765332111 13567788889999999999999999
Q ss_pred HHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 043116 393 NILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGRV 453 (482)
Q Consensus 393 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 453 (482)
+++........ ....... ..++.+..+..+.+++|+..|..++-.++.--+
T Consensus 165 ~~l~~fg~~~~-----~~k~~l~-----~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 165 ELMAAFGLTNV-----NVQTFLP-----ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp HHHHHHTTTTC-----CHHHHHH-----HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHhCCCcC-----CchhHHH-----HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 98865322110 0111111 224567778899999999999999887765443
No 108
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.19 E-value=0.046 Score=51.22 Aligned_cols=257 Identities=13% Similarity=0.068 Sum_probs=154.3
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhh
Q 043116 118 FVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRP 197 (482)
Q Consensus 118 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~ 197 (482)
++...+ +++..+..|...|..+..+-|..++. ++..++.++ .+.|..++..|...|..+|.+ .....
T Consensus 34 Il~~~k-g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~k 100 (507)
T 3u0r_A 34 ILDGVK-GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPR 100 (507)
T ss_dssp HHHGGG-SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHH
T ss_pred HHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhh
Confidence 344443 57899999999999999888887665 466889999 788889999999999999987 33678
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC-hhhHHH
Q 043116 198 ALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGD-DFQTQC 276 (482)
Q Consensus 198 ~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~ 276 (482)
+...|.++|++.++.-...+-.+|..+...++.. .+..+...+..+++.+|..++..|..-...- ......
T Consensus 101 iaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~ 172 (507)
T 3u0r_A 101 VADILTQLLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTK 172 (507)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccH
Confidence 8999999999999888888888887777555432 2344555554467889999888886544321 111112
Q ss_pred HHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHH---HhcCChhHHHHHHHHHHHh-
Q 043116 277 IINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA-GNREQIQAVIDAGLIGPIVNL---LQDAEFGTKKEAAWVISNA- 351 (482)
Q Consensus 277 l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~l---l~~~~~~~~~~a~~aL~~l- 351 (482)
-.+.-++..+.++|++- ...--.....+|..+-. .++...+.+++ ++....++ +...|++.....+.++...
T Consensus 173 E~E~~i~~~ikK~L~DV-T~~EF~L~m~lL~~lkl~~t~~g~qeLv~--ii~eQa~L~~~f~~sD~e~vdRlI~C~~~AL 249 (507)
T 3u0r_A 173 EVEELILTESKKVLEDV-TGEEFVLFMKILSGLKSLQTVSGRQQLVE--LVAEQADLEQTFNPSDPDCVDRLLQCTRQAV 249 (507)
T ss_dssp HHHHHHHHHHHHHTTSC-CHHHHHHHHHHHHTSGGGSSHHHHHHHHH--HHHHHHTTTSCCCSSCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhccc-cHHHHHHHHHHHHhcccccCchHHHHHHH--HHHHHHhccCCCCCcCHHHHHHHHHHHHHHH
Confidence 22333556677777555 33222233344443332 34444444433 22222111 1123555444444444433
Q ss_pred ---hcC-CCHHHHHHHHHcCChHHHHhcCCCC-CHHHHHHHHHHHHHHHHhch
Q 043116 352 ---TSG-GTHEQIKHLVREGCVKPLCDLLPCP-DPQIVTVCLIGLENILKVGE 399 (482)
Q Consensus 352 ---~~~-~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~~l~~L~~l~~~~~ 399 (482)
+.. .+.....++.+ .+++.+-.+-... .++.+...++++.-+..++.
T Consensus 250 P~FS~~v~StkFv~y~~~-kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~ 301 (507)
T 3u0r_A 250 PLFSKNVHSTRFVTYFCE-QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG 301 (507)
T ss_dssp GGCBTTBCCHHHHHHHHH-HTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred HHhccCCChHHHHHHHHH-hhccchhhccccccchHHHHHHHHHHHHHccCCC
Confidence 222 13445555444 4777766655432 22355555666666655544
No 109
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=97.16 E-value=0.041 Score=48.93 Aligned_cols=312 Identities=17% Similarity=0.191 Sum_probs=176.3
Q ss_pred HHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhh
Q 043116 90 EAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAK 169 (482)
Q Consensus 90 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~ 169 (482)
.+...| ++..++.+..+-++..+++..+...++-++.++.+.....|...+....-+..- -.+.+|.++..+..+++
T Consensus 262 R~FDLL-~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~--L~e~LPFi~~~i~~h~e 338 (619)
T 3c2g_A 262 RTFDLL-GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP--LENILPFLLRLIEIHPD 338 (619)
T ss_dssp HHHHHH-HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC--CTTHHHHHHHHHHHCCC
T ss_pred HHHHHH-HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc--ccccchHHHHHhccCCC
Confidence 344444 455568888899999999999999999999999999999999998443322111 12358888999988889
Q ss_pred hhHHHHHHHHHHHhhcCC-CCCChhhhhhHHHHHHHHhccC-------Chh-------HHHHHHHHHHHhcc------C-
Q 043116 170 LSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLIRSN-------DEK-------VLTDACRALAYLAD------G- 227 (482)
Q Consensus 170 ~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~ll~~~-------~~~-------~~~~~l~~L~~l~~------~- 227 (482)
.++.....+.|+|..... +......-.++++.+...+... +.. +...+++++.|..- +
T Consensus 339 DdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NG 418 (619)
T 3c2g_A 339 DEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNG 418 (619)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTS
T ss_pred cceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCC
Confidence 999999999999999887 4445555578888888776421 222 33344444444331 0
Q ss_pred -----CcHHHHH---HHHhCcHHHHHHhhCCCCh------hhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCC
Q 043116 228 -----TNDKIQA---VIEAGVCPRLVKLLGHRSR------LVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHN 293 (482)
Q Consensus 228 -----~~~~~~~---~~~~~~l~~L~~ll~~~~~------~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~ 293 (482)
.+...+. +++..++..++.+|+.+.- +.|...++.+.-+.+ .+..-+ . .++....+.
T Consensus 419 qr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlR-TP~~Pk-----d---~~l~VtDd~ 489 (619)
T 3c2g_A 419 ETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLR-TPFVPK-----D---GVLNVIDEN 489 (619)
T ss_dssp CCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHT-CTTSCC-----T---TGGGCCCTT
T ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhc-CCCCch-----h---hhccccchh
Confidence 1111222 3334677777777765431 344444444333332 111100 0 011222222
Q ss_pred CchhHHHHHHHHHHHHhc-----CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCC
Q 043116 294 HNKSIKKEVCWIISNITA-----GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGC 368 (482)
Q Consensus 294 ~~~~v~~~a~~~L~nl~~-----~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~ 368 (482)
....+....|.+++-.-. ...+..+.+++ ..+..|+.++..-..+. .++..+..+.
T Consensus 490 rk~NLvGHIciA~sWa~~Q~tNertqdTkqQLiE-R~fSLL~~LmEQc~~E~--qVAh~~YsIs---------------- 550 (619)
T 3c2g_A 490 RKENLIGHICAAYSWVFRQPNNTRTQSTKQQLVE-RTISLLLVLMEQCGAEK--EVAQYSYSID---------------- 550 (619)
T ss_dssp TCCCHHHHHHHHHHHHHHSCCCTTTHHHHHHHHH-HHHHHHHHHHHHTTCHH--HHHHTTTTSC----------------
T ss_pred hhhhhHHHHHHHHHHhhcCccccchhhHHHHHHH-HHHHHHHHHHHHhhhHH--HHHhheeecc----------------
Confidence 122233333333332221 23444455554 35555555555321121 1222222221
Q ss_pred hHHHHhcCCCC--CHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHH
Q 043116 369 VKPLCDLLPCP--DPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446 (482)
Q Consensus 369 l~~L~~ll~~~--~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~ 446 (482)
-=..++++. .|.....++..=.++++.++..... ..---..++-+.+|.|+++.+.|..++.
T Consensus 551 --CPLnlLn~nQ~KP~FI~NVL~VcDKILeHcP~~Ad~--------------W~i~r~tle~l~NHsNsDIa~aasSLL~ 614 (619)
T 3c2g_A 551 --CPLNLLNGNQVKPTFIHNVLVVCDKILEHCPTRADI--------------WTIDRPMLEGLTNHRNSDIAKAANSLLS 614 (619)
T ss_dssp --CGGGGGSSCCCCHHHHHHHHHHHHHHHHHCTTHHHH--------------SCCCHHHHHHHHTCSSHHHHHHHHHHHT
T ss_pred --CchhhhcccccChHHHHHHHHHHHHHHHhCcchhcc--------------ceechHHHHHHhcCCCchHHHHHHHHHH
Confidence 112344443 3556667777777888777664321 1111234566679999999999999887
Q ss_pred Hh
Q 043116 447 TY 448 (482)
Q Consensus 447 ~~ 448 (482)
++
T Consensus 615 rf 616 (619)
T 3c2g_A 615 RF 616 (619)
T ss_dssp TS
T ss_pred hC
Confidence 65
No 110
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.0063 Score=54.33 Aligned_cols=186 Identities=15% Similarity=0.098 Sum_probs=122.3
Q ss_pred HHHHHcchhhhhHHHHHHHHHHHhhcCCCCCC-----hhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCc-----
Q 043116 160 LLAELNEHAKLSMLRTATWTLSNFCRGKPQPP-----FNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTN----- 229 (482)
Q Consensus 160 l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~-----~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~----- 229 (482)
+-..+ .+.+-..+..++..+..+....+... ........+.+...+.+.+..++..++.++..++....
T Consensus 14 l~e~l-~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERL-TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHT-TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhc-ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 33445 56667778888888877776542211 11233455666778889999999999999998875322
Q ss_pred HHHHHHHHhCcHHHHHH-hhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHH
Q 043116 230 DKIQAVIEAGVCPRLVK-LLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISN 308 (482)
Q Consensus 230 ~~~~~~~~~~~l~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~n 308 (482)
.......-..+++.++. .+.+..+.++..+..++..++....... .+++.+...+.+. ++.++.+++..|..
T Consensus 93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~------~~~e~l~~~l~~K-npkv~~~~l~~l~~ 165 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT------QSVELVIPFFEKK-LPKLIAAAANCVYE 165 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH------HHHHHHGGGGGCS-CHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHhcc-CHHHHHHHHHHHHH
Confidence 11111222345676665 4788888999999988887775332211 1345677788888 99999999988888
Q ss_pred Hhc--CCHH-HHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcC
Q 043116 309 ITA--GNRE-QIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSG 354 (482)
Q Consensus 309 l~~--~~~~-~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~ 354 (482)
+.. +... .....++ .+++.+..++.+.++.||..|..++..+...
T Consensus 166 ~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 864 2111 0112222 3566677788999999999999999988764
No 111
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.93 E-value=0.0069 Score=57.66 Aligned_cols=244 Identities=13% Similarity=0.123 Sum_probs=154.8
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh--HHHHHhCCChHHHHHhhC----------CCCHHHHHHHHHHHH
Q 043116 71 VVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN--TKVAIDHGAVPIFVKLLA----------SPSDDVREQAVWALG 138 (482)
Q Consensus 71 ~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~g~i~~L~~ll~----------~~~~~~~~~a~~~L~ 138 (482)
+...|+.-|-++.| ++|..|+.+|..+....... +..-.+..+.-.++.++. ..-..+|+.|+.+|+
T Consensus 175 fcE~L~~DLFdp~W-EiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSYEW-YKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCSSH-HHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcch-hhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 55667777778885 99999999999987632211 000011123333444331 122579999999999
Q ss_pred HhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHH
Q 043116 139 NVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDAC 218 (482)
Q Consensus 139 ~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l 218 (482)
.+ ..-+.- ..++..++..+ ....-+++.-++..|.++... .. ...++++.++..|.+.|++++..|+
T Consensus 254 aL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL~DL---L~--~Ld~Vv~aVL~GL~D~DDDVRAVAA 320 (800)
T 3oc3_A 254 RI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYLKEF---VE--DKDGLCRKLVSLLSSPDEDIKLLSA 320 (800)
T ss_dssp HH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHTGGG---CC--CHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHHHHH---HH--HHHHHHHHHHhhcCCcccHHHHHHH
Confidence 98 554432 22333344333 445567888888999998111 11 1688999999999999999999999
Q ss_pred HHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCC--hhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCch
Q 043116 219 RALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRS--RLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNK 296 (482)
Q Consensus 219 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 296 (482)
.+|.-++ .++... .++..+-..|.+-+ ..-....+..|+.++...... -.....+|.|..++++. -.
T Consensus 321 etLiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHt-IT 389 (800)
T 3oc3_A 321 ELLCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSP-VP 389 (800)
T ss_dssp HHHTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCS-SH
T ss_pred HHhhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCC-cH
Confidence 9999999 222232 23445555554422 223444566677766544211 11237899999999999 99
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHH
Q 043116 297 SIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVIS 349 (482)
Q Consensus 297 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~ 349 (482)
.||..+..++..+. .....+.+.+ .++-+++++++..+..+..
T Consensus 390 SVR~AVL~TL~tfL--~~~~LRLIFQ--------NILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 390 EVRTSILNMVKNLS--EESIDFLVAE--------VVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHHHTTTCC--CHHHHHHHHH--------HHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hhhHHHHHHH--------HHHhCCcHHHHHHHHHHHH
Confidence 99999999998876 2332222222 3445778888887777764
No 112
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.86 E-value=0.046 Score=46.60 Aligned_cols=196 Identities=13% Similarity=0.046 Sum_probs=124.9
Q ss_pred ChhhHHHHHHHHhHhhcCChhhHHHHHhc-CchHHHHHHh----cC---CC-chhHHHHHHH--HHHHHhcCCHHHHHHH
Q 043116 252 SRLVLTAALRTIGNIVTGDDFQTQCIINC-GALRYLLGLL----IH---NH-NKSIKKEVCW--IISNITAGNREQIQAV 320 (482)
Q Consensus 252 ~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-~~i~~L~~ll----~~---~~-~~~v~~~a~~--~L~nl~~~~~~~~~~l 320 (482)
+++.|+.|+.-|+.=-...++..-.++.. |.+..|++=+ .. +. ....-...|. +|-......++.+..+
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~F 93 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAF 93 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHH
Confidence 45568888877776555445555556654 5554443222 11 10 1111222233 3333333567878899
Q ss_pred HHcCChHHHHHHHhcC-----ChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 043116 321 IDAGLIGPIVNLLQDA-----EFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENIL 395 (482)
Q Consensus 321 ~~~~~i~~L~~ll~~~-----~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~ 395 (482)
+++++.--|..++... .+.+|..++.+++.++...+++...++.+.++++.....++.++.--+..|..++.+++
T Consensus 94 l~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL 173 (268)
T 2fv2_A 94 LAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL 173 (268)
T ss_dssp HHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 9999887888888733 25789999999999999999999999999999999999999999988888999999998
Q ss_pred HhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043116 396 KVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCG 451 (482)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 451 (482)
..+....-.+ .+.+.|.....-.+ ..+.++..++++++-+...++..++.+.
T Consensus 174 ~dd~GL~YiC--~t~eRF~av~~vL~--~mV~~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 174 LDDTGLAYIC--QTYERFSHVAMILG--KMVLQLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HSHHHHHHHT--SSHHHHHHHHHHHH--HHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred ccchhHHHHH--ccHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 7655443222 11222222211111 1233455677877766665555554443
No 113
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.74 E-value=0.39 Score=45.12 Aligned_cols=299 Identities=11% Similarity=0.066 Sum_probs=169.9
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 043116 73 PRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVL 152 (482)
Q Consensus 73 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 152 (482)
..++...+ ++ +..+..|+..+.....+-|+..+. .+..+++++.+++..+|..|+..|..+|.+ . ....
T Consensus 32 ~~Il~~~k-g~-~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~-~i~k-- 100 (507)
T 3u0r_A 32 QVILDGVK-GG-TKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-E-NLPR-- 100 (507)
T ss_dssp HHHHHGGG-SC-HHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-T-CHHH--
T ss_pred HHHHHhcC-CC-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-h-hhhh--
Confidence 33444433 34 789999999999999988988764 468899999999999999999999999977 2 2222
Q ss_pred HhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccC-CcHH
Q 043116 153 SQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADG-TNDK 231 (482)
Q Consensus 153 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~-~~~~ 231 (482)
+...|.++| +..++.-...+-++|..+...++ .+.+..+..-+.++++.+|+.++..|..-... ..+.
T Consensus 101 ---iaDvL~QlL-qtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~ 169 (507)
T 3u0r_A 101 ---VADILTQLL-QTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEV 169 (507)
T ss_dssp ---HHHHHHHHT-TCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTT
T ss_pred ---HHHHHHHHH-hccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhh
Confidence 355778888 56666556666677777766543 46666666666667888999988888643311 1111
Q ss_pred HHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC-hhhHHHHHhcCchHHHHHHhc------CCCchhHHHHHHH
Q 043116 232 IQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGD-DFQTQCIINCGALRYLLGLLI------HNHNKSIKKEVCW 304 (482)
Q Consensus 232 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~i~~L~~ll~------~~~~~~v~~~a~~ 304 (482)
...-.+.-++..+.+.|.+-+..--.-.+.+|..+-... ....+.+ ++.+..... .. |.+.-.....
T Consensus 170 l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeL-----v~ii~eQa~L~~~f~~s-D~e~vdRlI~ 243 (507)
T 3u0r_A 170 LTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQL-----VELVAEQADLEQTFNPS-DPDCVDRLLQ 243 (507)
T ss_dssp SCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHH-----HHHHHHHHTTTSCCCSS-CHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHH-----HHHHHHHHhccCCCCCc-CHHHHHHHHH
Confidence 111222234456666775544433333445554443322 2222222 222332211 12 3333333333
Q ss_pred HHHHHh----c--CCHHHHHHHHHcCChHHHHHHHhc-CChhHHHHHHHHHHHhhcCCC-HHHHHHHHHcCChHHHHhcC
Q 043116 305 IISNIT----A--GNREQIQAVIDAGLIGPIVNLLQD-AEFGTKKEAAWVISNATSGGT-HEQIKHLVREGCVKPLCDLL 376 (482)
Q Consensus 305 ~L~nl~----~--~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~a~~aL~~l~~~~~-~~~~~~l~~~~~l~~L~~ll 376 (482)
++..-. . .+.....++.+ .++|.+-.+-.. +.++.+...+.++..++.++. .+....++. -+++.|...+
T Consensus 244 C~~~ALP~FS~~v~StkFv~y~~~-kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~-~iy~~L~~ym 321 (507)
T 3u0r_A 244 CTRQAVPLFSKNVHSTRFVTYFCE-QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLR-KLFDKLLEYM 321 (507)
T ss_dssp HHHHHGGGCBTTBCCHHHHHHHHH-HTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHH-HHHHHHHTTS
T ss_pred HHHHHHHHhccCCChHHHHHHHHH-hhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHH-HHHHHHHHHC
Confidence 332222 2 34555555555 477755433332 223478888999999987765 222222111 1334444443
Q ss_pred CCC-------------CH----HHHHHHHHHHHHHHHhchhc
Q 043116 377 PCP-------------DP----QIVTVCLIGLENILKVGEAE 401 (482)
Q Consensus 377 ~~~-------------~~----~v~~~~l~~L~~l~~~~~~~ 401 (482)
-.+ ++ ..++..+-++..+.+..+..
T Consensus 322 P~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~ 363 (507)
T 3u0r_A 322 PLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPDF 363 (507)
T ss_dssp CCCC--------------CCCHHHHHHHHHHHHHHHTTCTHH
T ss_pred CCCcccccccccccccCcccchhHHHHHHHHHHHHhhhChhh
Confidence 211 12 24566777777777765553
No 114
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=96.29 E-value=0.073 Score=45.80 Aligned_cols=175 Identities=10% Similarity=0.039 Sum_probs=110.8
Q ss_pred CcHHHHHHHHhCcHHHHHHhhCC-----------CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCch
Q 043116 228 TNDKIQAVIEAGVCPRLVKLLGH-----------RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNK 296 (482)
Q Consensus 228 ~~~~~~~~~~~~~l~~L~~ll~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 296 (482)
+....+.+ ..+++..|+..|.. .+......++.||..++.........+-..+.+..+...+.++ ++
T Consensus 33 ~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~-~~ 110 (233)
T 2f31_A 33 PVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPA-VP 110 (233)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTT-SH
T ss_pred CcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCC-Cc
Confidence 33444445 34455555555522 1345678899999999875444444444567889999999888 99
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCC-hHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhc
Q 043116 297 SIKKEVCWIISNITAGNREQIQAVIDAGL-IGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDL 375 (482)
Q Consensus 297 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~-i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~l 375 (482)
.+|..+...|..+|..+.. .+ .+.+++.+.. .... -+..-+..+++.
T Consensus 111 ~~r~~~leLL~~lc~~~~~--------~G~~~~VL~Al~~---------------~~~~---------~e~~RF~~lv~~ 158 (233)
T 2f31_A 111 NMMIDAAKLLSALCILPQP--------EDMNERVLEAMTE---------------RAEM---------DEVERFQPLLDG 158 (233)
T ss_dssp HHHHHHHHHHHHHHTCSSS--------SCHHHHHHHHHHH---------------HHHH---------HTSCTTHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCCC--------CChHHHHHHHHHH---------------HHHh---------CCcchHHHHHHH
Confidence 9999999999888863221 12 3444444432 1000 012234445555
Q ss_pred CC-CCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHH
Q 043116 376 LP-CPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSV 442 (482)
Q Consensus 376 l~-~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~ 442 (482)
++ +.+.+.+..++..+..++...+... ..-..+..|...|..+.+..+....++++...-.
T Consensus 159 l~~~~~~e~~~~~m~lIN~li~~~~dl~------~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi~ 220 (233)
T 2f31_A 159 LKSGTSIALKVGCLQLINALITPAEELD------FRVHIRSELMRLGLHQVLQELREIENEDMKVQLC 220 (233)
T ss_dssp TSTTSCHHHHHHHHHHHHHHHTTCCCHH------HHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHHHHHCCCCCHH------HHHHHHHHHHHCChHHHHHHHhccCCHHHHHHHH
Confidence 55 4667888888888888887654322 1234566778899999999998888888765543
No 115
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.27 E-value=0.0023 Score=55.49 Aligned_cols=89 Identities=16% Similarity=0.191 Sum_probs=52.1
Q ss_pred HHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 043116 245 VKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAG 324 (482)
Q Consensus 245 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 324 (482)
..+++++++.||..++..+ ..+.+..++.++ ++.||..++..+
T Consensus 152 ~~l~~D~d~~VR~~aa~~l------------------~~~ll~~ll~D~-d~~VR~aaa~~l------------------ 194 (244)
T 1lrv_A 152 FRFMRDEDRQVRKLVAKRL------------------PEESLGLMTQDP-EPEVRRIVASRL------------------ 194 (244)
T ss_dssp GGTTTCSCHHHHHHHHHHS------------------CGGGGGGSTTCS-SHHHHHHHHHHC------------------
T ss_pred HHHHcCCCHHHHHHHHHcC------------------CHHHHHHHHcCC-CHHHHHHHHHhC------------------
Confidence 3455566666666665531 012233455555 677777666542
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHH
Q 043116 325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIG 390 (482)
Q Consensus 325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~ 390 (482)
..+.|..++.++++.++..++..+. .+.|..+ +++++.|+..+...
T Consensus 195 ~~~~L~~Ll~D~d~~VR~~aa~~l~-------------------~~~L~~L-~D~~~~VR~aa~~~ 240 (244)
T 1lrv_A 195 RGDDLLELLHDPDWTVRLAAVEHAS-------------------LEALREL-DEPDPEVRLAIAGR 240 (244)
T ss_dssp CGGGGGGGGGCSSHHHHHHHHHHSC-------------------HHHHHHC-CCCCHHHHHHHHCC
T ss_pred CHHHHHHHHcCCCHHHHHHHHHcCC-------------------HHHHHHc-cCCCHHHHHHHHHH
Confidence 1244566677777778777776642 2445556 77888888776543
No 116
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.23 E-value=0.0015 Score=56.69 Aligned_cols=64 Identities=13% Similarity=-0.003 Sum_probs=37.1
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCC
Q 043116 34 AGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHG 113 (482)
Q Consensus 34 ~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 113 (482)
.+++++++.++..++..+ . ...+..++++++ +.||..++..|.
T Consensus 57 ~ll~d~~~~VR~~AA~~l------~-------------~~~l~~L~~D~~-~~VR~~aA~~L~----------------- 99 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS------P-------------VEALTPLIRDSD-EVVRRAVAYRLP----------------- 99 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS------C-------------GGGGGGGTTCSS-HHHHHHHHTTSC-----------------
T ss_pred HHhcCCCHHHHHHHHHhC------C-------------HHHHHHHccCcC-HHHHHHHHHHCC-----------------
Confidence 334677788887777642 0 122556666666 677777664310
Q ss_pred ChHHHHHhhCCCCHHHHHHHHH
Q 043116 114 AVPIFVKLLASPSDDVREQAVW 135 (482)
Q Consensus 114 ~i~~L~~ll~~~~~~~~~~a~~ 135 (482)
.+.|..++.++++.+|..+..
T Consensus 100 -~~~L~~ll~D~d~~VR~~aA~ 120 (244)
T 1lrv_A 100 -REQLSALMFDEDREVRITVAD 120 (244)
T ss_dssp -SGGGGGTTTCSCHHHHHHHHH
T ss_pred -HHHHHHHHcCCCHHHHHHHHH
Confidence 134555666666666666555
No 117
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.21 E-value=0.15 Score=43.10 Aligned_cols=142 Identities=12% Similarity=0.077 Sum_probs=100.0
Q ss_pred HHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHH-HhccCChhHHHHHHHHHHHhcc-CCcHHHHHHH
Q 043116 159 PLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQ-LIRSNDEKVLTDACRALAYLAD-GTNDKIQAVI 236 (482)
Q Consensus 159 ~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~-ll~~~~~~~~~~~l~~L~~l~~-~~~~~~~~~~ 236 (482)
.+...|-+++..+++..|+..|..+ . .....++.+.. +...++..|+..+..++..++. ..++
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------ 138 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------ 138 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT------
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH------
Confidence 3444454666668888888888777 2 12567888887 6667789999999999998884 3332
Q ss_pred HhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhc-CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH
Q 043116 237 EAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINC-GALRYLLGLLIHNHNKSIKKEVCWIISNITAGNRE 315 (482)
Q Consensus 237 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~ 315 (482)
..++.+.....+++..+|..|...+.--+.. +... .+. -+++.+-.+..++ +..||+..+|.|..++..+|+
T Consensus 139 --~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k---~dp~~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~~Pd 211 (240)
T 3l9t_A 139 --KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFK---ENPNEAIRRIADLKEDV-SEYVRKSVGNALRDISKKFPD 211 (240)
T ss_dssp --TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTT---TCHHHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTTCHH
T ss_pred --HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhh---cCHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhhCHH
Confidence 2467888999999999999998876543321 1100 001 1344455555555 899999999999999999999
Q ss_pred HHHHHHH
Q 043116 316 QIQAVID 322 (482)
Q Consensus 316 ~~~~l~~ 322 (482)
.+..+++
T Consensus 212 ~V~~~~~ 218 (240)
T 3l9t_A 212 LVKIELK 218 (240)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777765
No 118
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.90 E-value=0.33 Score=41.08 Aligned_cols=145 Identities=17% Similarity=0.059 Sum_probs=103.9
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhC-CChhhH
Q 043116 71 VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAG-DSSRCR 148 (482)
Q Consensus 71 ~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~-~~~~~~ 148 (482)
.++....+.+++. .++|..|+..|+.. ...+ ..++.+.. +..+++-.+++.+..++..++. ..++.
T Consensus 72 ~~~la~~L~~~~~-deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~- 139 (240)
T 3l9t_A 72 IKKLAFLAYQSDV-YQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK- 139 (240)
T ss_dssp HHHHHHHHHTCSS-HHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-
T ss_pred HHHHHHHHHhCcc-hHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-
Confidence 3455566667777 79999999988887 3111 24566666 5667889999999999999984 33321
Q ss_pred HHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCC
Q 043116 149 DFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGT 228 (482)
Q Consensus 149 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~ 228 (482)
.++.+..-. .+++..+++.|+..+.--+.. + ........++|.+-.+..+++.-|+..+.+.|..++..+
T Consensus 140 -------~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 140 -------ALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF 209 (240)
T ss_dssp -------THHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred -------HHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence 345555555 788889999888776543332 1 122333567888888888899999999999999999998
Q ss_pred cHHHHHHHH
Q 043116 229 NDKIQAVIE 237 (482)
Q Consensus 229 ~~~~~~~~~ 237 (482)
++....+++
T Consensus 210 Pd~V~~~~~ 218 (240)
T 3l9t_A 210 PDLVKIELK 218 (240)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877665554
No 119
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=95.79 E-value=0.46 Score=50.74 Aligned_cols=173 Identities=15% Similarity=0.158 Sum_probs=112.8
Q ss_pred hHHHHHHHcch---hhhhHHHHHHHHHHHhhc----CCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCc
Q 043116 157 LIPLLAELNEH---AKLSMLRTATWTLSNFCR----GKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTN 229 (482)
Q Consensus 157 i~~l~~~l~~~---~~~~~~~~a~~~L~~L~~----~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~ 229 (482)
+..+..++... .++.++..+..+++.+.. ..+.........+...+.+.+...+.+-+...+.+|+|+...
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-- 470 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-- 470 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--
Confidence 33445555322 234455555555555543 334444455667777777888888888899999999999842
Q ss_pred HHHHHHHHhCcHHHHHHhhCC-------CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhc-CCCchhHHHH
Q 043116 230 DKIQAVIEAGVCPRLVKLLGH-------RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLI-HNHNKSIKKE 301 (482)
Q Consensus 230 ~~~~~~~~~~~l~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~v~~~ 301 (482)
..++.+.+++.. ....++..|+++|..++...+...+ +.++.+.. ..+++++|..
T Consensus 471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRia 533 (1056)
T 1lsh_A 471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIR 533 (1056)
T ss_dssp ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHH
T ss_pred ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHHH
Confidence 235677777632 2346888999999999976655433 34566663 3348899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCChhHHHHHHHHHHHhhcCCCHH
Q 043116 302 VCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ-DAEFGTKKEAAWVISNATSGGTHE 358 (482)
Q Consensus 302 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~a~~aL~~l~~~~~~~ 358 (482)
|+..|.... .+.. .+..+...+. +.+.+|...+...|.+++....|.
T Consensus 534 A~~~Lm~t~-P~~~---------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~ 581 (1056)
T 1lsh_A 534 SCIVFFESK-PSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPE 581 (1056)
T ss_dssp HHHHHHHTC-CCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHC-cCHH---------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcc
Confidence 988885432 2333 3334444454 478899999999999998876653
No 120
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.57 E-value=0.98 Score=40.34 Aligned_cols=186 Identities=11% Similarity=0.066 Sum_probs=106.5
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCC----hHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChh
Q 043116 72 VPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGA----VPIFVKLLA-SPSDDVREQAVWALGNVAGDSSR 146 (482)
Q Consensus 72 ~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~----i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~ 146 (482)
+..+.++++=+ .+.+.-++..+.-.+. .+.....+.+... +..+...+. ...+..+..++++++|+.... .
T Consensus 105 l~~l~kil~WP--~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~-~ 180 (304)
T 3ebb_A 105 LQILWKAINCP--EDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQ-A 180 (304)
T ss_dssp HHHHHHHHTSC--TTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSH-H
T ss_pred HHHHHHHHcCC--HHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCc-h
Confidence 45555555322 2455666666666655 5555555544322 223344443 245667889999999998554 4
Q ss_pred hHHHHHHhCChHHHHHHHc---chhhhhHHHHHHHHHHHhhcCC-CCCChhhhhhHHHHHHHHhc-cCChhHHHHHHHHH
Q 043116 147 CRDFVLSQGALIPLLAELN---EHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLIR-SNDEKVLTDACRAL 221 (482)
Q Consensus 147 ~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~ll~-~~~~~~~~~~l~~L 221 (482)
.++.+.. ....++..+. .+.+..++..++..+.|++... ..........++..+..++. ..|++....++-+|
T Consensus 181 g~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvAL 258 (304)
T 3ebb_A 181 GQKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVAL 258 (304)
T ss_dssp HHHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 5565554 2344444442 2346678888888888888643 11222333345555556665 45889999999999
Q ss_pred HHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHH
Q 043116 222 AYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTI 263 (482)
Q Consensus 222 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L 263 (482)
+++...+.+..+.....++-..+-+..+...+.-...+++.+
T Consensus 259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~ 300 (304)
T 3ebb_A 259 GTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFI 300 (304)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHH
T ss_pred HHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHH
Confidence 999977655444333345555555555443333233344433
No 121
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.53 E-value=1.7 Score=47.34 Aligned_cols=283 Identities=12% Similarity=0.088 Sum_probs=158.0
Q ss_pred hHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHH-hh-CCCCHHHHHHHHHHHHHhhCC-----ChhhHHHHHHhCCh
Q 043116 85 PQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVK-LL-ASPSDDVREQAVWALGNVAGD-----SSRCRDFVLSQGAL 157 (482)
Q Consensus 85 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll-~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~~~~~~~i 157 (482)
++.|.+|-..|..+-. ++ .....+.. +. .+.+..+|..|+.+|.+.... +++.+..+.+
T Consensus 27 ~~~r~~Ae~~L~~~~~-~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~---- 92 (1204)
T 3a6p_A 27 QRYRLEALKFCEEFKE-KC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKN---- 92 (1204)
T ss_dssp HHHHHHHHHHHHHHHH-HC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHH----
T ss_pred hHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH----
Confidence 6788888888877744 22 13333333 33 456789999999999988632 2233333322
Q ss_pred HHHHHHHcch------hhhhHHHHHHHHHHHhhcCC-CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccC---
Q 043116 158 IPLLAELNEH------AKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADG--- 227 (482)
Q Consensus 158 ~~l~~~l~~~------~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~--- 227 (482)
.++..+... .+..++...+.++..+.... | .....+++.++.++.+ ++.....++.+|..+++.
T Consensus 93 -~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p----~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~ 166 (1204)
T 3a6p_A 93 -SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP----QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVT 166 (1204)
T ss_dssp -HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcc
Confidence 344444222 34667777888888888764 3 2246788888888876 555677788888777632
Q ss_pred ----CcHHHHH---HHHh---CcHHHHHHhhCC-------------------CChhhHHHHHHHHhHhhcCChhhHHHHH
Q 043116 228 ----TNDKIQA---VIEA---GVCPRLVKLLGH-------------------RSRLVLTAALRTIGNIVTGDDFQTQCII 278 (482)
Q Consensus 228 ----~~~~~~~---~~~~---~~l~~L~~ll~~-------------------~~~~v~~~a~~~L~~l~~~~~~~~~~l~ 278 (482)
...+... .+.. .++..+..++.+ .+..++..++.++.+...--+. ..+.
T Consensus 167 ~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~ 244 (1204)
T 3a6p_A 167 FQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHIT 244 (1204)
T ss_dssp SCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHH
Confidence 1111111 1111 223333333322 1234667778887766543221 2233
Q ss_pred hcC--chHHHHHHhcCCCchhHHHHHHHHHHHHhcCC--HHHHHHHHHc---CChHHHHHHHh--------cCChhHHHH
Q 043116 279 NCG--ALRYLLGLLIHNHNKSIKKEVCWIISNITAGN--REQIQAVIDA---GLIGPIVNLLQ--------DAEFGTKKE 343 (482)
Q Consensus 279 ~~~--~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~~---~~i~~L~~ll~--------~~~~~~~~~ 343 (482)
+.. +++.+..++. ++.++..|+.+|..++... ++....++.. ..+..++.... +.+.++.+.
T Consensus 245 ~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~ 321 (1204)
T 3a6p_A 245 AENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKR 321 (1204)
T ss_dssp TTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHH
T ss_pred hccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHH
Confidence 332 6777776655 4578999999999999732 3433333320 11234444432 223556666
Q ss_pred HHHHHHHhhcCCCHHHHHHHHH-----------cCChHHHHhcCCCCCHHHHHHHHHHHHHHHHh
Q 043116 344 AAWVISNATSGGTHEQIKHLVR-----------EGCVKPLCDLLPCPDPQIVTVCLIGLENILKV 397 (482)
Q Consensus 344 a~~aL~~l~~~~~~~~~~~l~~-----------~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~ 397 (482)
.+..+..+.. . ...+.. .++++.+..+..+++..+...++.....+++.
T Consensus 322 l~~ll~~lg~----~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 322 LCQVLCALGN----Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHHHHHH----H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHH----H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 6666666652 1 111111 13466677777777777666666655555443
No 122
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.02 E-value=0.94 Score=38.78 Aligned_cols=96 Identities=14% Similarity=0.136 Sum_probs=63.7
Q ss_pred HHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC----C------CChHHHHHHHHHHHHHhCCChHhHHHHHh-CCCh
Q 043116 47 ATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMR----E------DYPQLQFEAARALTNIASGTSENTKVAID-HGAV 115 (482)
Q Consensus 47 a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~----~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i 115 (482)
.+..|.-.+...+..-++.+ ..+++..|+..|.. + .+.+.+..++.||..+.. +....+.++. .+.+
T Consensus 21 ~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i 98 (233)
T 2f31_A 21 CLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGI 98 (233)
T ss_dssp HHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHH
T ss_pred HHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHH
Confidence 34444433343322224445 35566666666542 1 115678889999999987 5555555554 4678
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 043116 116 PIFVKLLASPSDDVREQAVWALGNVAGDS 144 (482)
Q Consensus 116 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 144 (482)
..+...+.++++.++..++..|..+|..+
T Consensus 99 ~~l~~~L~s~~~~~r~~~leLL~~lc~~~ 127 (233)
T 2f31_A 99 LLLVRAMDPAVPNMMIDAAKLLSALCILP 127 (233)
T ss_dssp HHHHTTCCTTSHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999988544
No 123
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.01 E-value=0.16 Score=45.46 Aligned_cols=111 Identities=12% Similarity=0.057 Sum_probs=69.3
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhC--CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 043116 75 FVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDH--GAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVL 152 (482)
Q Consensus 75 L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 152 (482)
+...+.++..+..+.-++++++|+.. ++..+..+... .+++.+...+.+.+..++..+...+.|++......+..-.
T Consensus 152 l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~ 230 (304)
T 3ebb_A 152 LINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG 230 (304)
T ss_dssp HHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH
T ss_pred HHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH
Confidence 33444444336679999999999998 67777776643 2445555566667899999999999999832100000000
Q ss_pred HhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcC
Q 043116 153 SQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG 186 (482)
Q Consensus 153 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~ 186 (482)
...++..+..++....|.+....++-+|.+|...
T Consensus 231 ~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 231 KAQCLSLISTILEVVQDLEATFRLLVALGTLISD 264 (304)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence 0112334444554445677777788888888765
No 124
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=94.88 E-value=0.51 Score=42.11 Aligned_cols=155 Identities=14% Similarity=0.166 Sum_probs=109.1
Q ss_pred HHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHH
Q 043116 222 AYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKE 301 (482)
Q Consensus 222 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~ 301 (482)
.++.-++++.++-++..+++..+...+..++.++....+..|...+... .... .--...+|.++..+.-.++.++...
T Consensus 267 L~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDak-sL~~-t~L~e~LPFi~~~i~~h~eDdvvYS 344 (619)
T 3c2g_A 267 LGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAK-ALAK-TPLENILPFLLRLIEIHPDDEVIYS 344 (619)
T ss_dssp HHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCG-GGGT-SCCTTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchH-HHhh-ccccccchHHHHHhccCCCcceEEe
Confidence 4555677778888999999999999999999999999999998887532 2111 1112567888888875558889999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-------ChhHHHHHHHHHHHhhc-------------CC------
Q 043116 302 VCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDA-------EFGTKKEAAWVISNATS-------------GG------ 355 (482)
Q Consensus 302 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-------~~~~~~~a~~aL~~l~~-------------~~------ 355 (482)
..+.|+|...+........+..|.++.|...+... +..-++.||..++|... +|
T Consensus 345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~G 424 (619)
T 3c2g_A 345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTAG 424 (619)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCCC
T ss_pred cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccCC
Confidence 99999999998888777777899999999887521 22334445555554432 11
Q ss_pred --CHHHHHHHHHcCChHHHHhcCCC
Q 043116 356 --THEQIKHLVREGCVKPLCDLLPC 378 (482)
Q Consensus 356 --~~~~~~~l~~~~~l~~L~~ll~~ 378 (482)
+..+...+++..++..|+..++-
T Consensus 425 ~~EqQQVckFIE~d~LKrLMtCLS~ 449 (619)
T 3c2g_A 425 PNEKQQVCKFIEIDILKKLMSCLSC 449 (619)
T ss_dssp HHHHHHHHGGGSHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22333444555667777777654
No 125
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=94.86 E-value=1.2 Score=41.25 Aligned_cols=156 Identities=13% Similarity=0.114 Sum_probs=96.1
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC----------CCChHHHHHHHHHHHHH
Q 043116 30 PTMVAGVWSDD-NKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMR----------EDYPQLQFEAARALTNI 98 (482)
Q Consensus 30 ~~l~~~l~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~----------~~~~~v~~~a~~~L~~l 98 (482)
..+++.|++.. ..-....+..|..-+...+..-++.+. .+++..|+..|.. ..+...+..+++||..+
T Consensus 69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal 147 (383)
T 3eg5_B 69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 147 (383)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 34566666442 222234566666555554333356666 5678888888741 11157888999999999
Q ss_pred hCCChHhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hh-HHHHHH----------hCChHHHHHHHc
Q 043116 99 ASGTSENTKVAID-HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSS-RC-RDFVLS----------QGALIPLLAELN 165 (482)
Q Consensus 99 ~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~-~~~~~~----------~~~i~~l~~~l~ 165 (482)
.. +....+.++. ...+..|...+.+.++.++..++..|..+|.... .. ...+.+ ..-+..++..+.
T Consensus 148 mN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~ 226 (383)
T 3eg5_B 148 MN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK 226 (383)
T ss_dssp TS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred hc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 86 5555555554 4678999999999999999999999999995543 21 222222 223555666664
Q ss_pred chhhhhHHHHHHHHHHHhhcCC
Q 043116 166 EHAKLSMLRTATWTLSNFCRGK 187 (482)
Q Consensus 166 ~~~~~~~~~~a~~~L~~L~~~~ 187 (482)
...+.+....++..+..+....
T Consensus 227 ~~~~~e~~~~~m~lIN~li~~~ 248 (383)
T 3eg5_B 227 SGTSIALKVGCLQLINALITPA 248 (383)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTC
T ss_pred ccCcHHHHHHHHHHHHHHHcCC
Confidence 3344455555555555555544
No 126
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=94.71 E-value=0.62 Score=43.28 Aligned_cols=160 Identities=16% Similarity=0.110 Sum_probs=108.9
Q ss_pred hhHHHHHhcCchHHHHHHhcC----------CCchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCChhH
Q 043116 272 FQTQCIINCGALRYLLGLLIH----------NHNKSIKKEVCWIISNITAGNREQIQAVID-AGLIGPIVNLLQDAEFGT 340 (482)
Q Consensus 272 ~~~~~l~~~~~i~~L~~ll~~----------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~~ 340 (482)
.-.+.+. .+|+..|+.+|.. ..+......+..||..++.. ...+..++. ...+..+...+.+..+.+
T Consensus 101 sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~ 178 (383)
T 3eg5_B 101 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNM 178 (383)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHH
T ss_pred HHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCchHH
Confidence 4444454 5667777777742 11446778888899888753 455666664 667889999999999999
Q ss_pred HHHHHHHHHHhhcCCCHHH-HHHH----------HHcCChHHHHhcCCC-CCHHHHHHHHHHHHHHHHhchhccccCCCC
Q 043116 341 KKEAAWVISNATSGGTHEQ-IKHL----------VREGCVKPLCDLLPC-PDPQIVTVCLIGLENILKVGEAEKNTDNIG 408 (482)
Q Consensus 341 ~~~a~~aL~~l~~~~~~~~-~~~l----------~~~~~l~~L~~ll~~-~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~ 408 (482)
+..++..|..++....++. ...+ .+..-+..+++.++. .+.+.+..++..+..++...+...
T Consensus 179 ~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~------ 252 (383)
T 3eg5_B 179 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD------ 252 (383)
T ss_dssp HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH------
T ss_pred HHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHH------
Confidence 9999999988776543111 1111 223457778888876 577888888888888887654322
Q ss_pred cccHHHHHHHHhchHHHHHHhhcCCCHHHHH
Q 043116 409 DVNQYAQLVEEAEGLEKIENLQSHDNNDIHE 439 (482)
Q Consensus 409 ~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~ 439 (482)
..-.++..|...|..+.+..+-...++++..
T Consensus 253 ~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~ 283 (383)
T 3eg5_B 253 FRVHIRSELMRLGLHQVLQELREIENEDMKV 283 (383)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHTTSCCHHHHH
T ss_pred HHHHHHHHHHHCChHHHHHHHhcCCChhHHH
Confidence 1234566778889999999887777766643
No 127
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=94.69 E-value=2.7 Score=38.99 Aligned_cols=175 Identities=10% Similarity=0.072 Sum_probs=107.4
Q ss_pred CCcHHHHHHHHhCcHHHHHHhhCC----C-------ChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCc
Q 043116 227 GTNDKIQAVIEAGVCPRLVKLLGH----R-------SRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHN 295 (482)
Q Consensus 227 ~~~~~~~~~~~~~~l~~L~~ll~~----~-------~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 295 (482)
.+....+.+. .+++..|+..|.. + +......++.||..++.........+-..+.+..+...+.++ .
T Consensus 36 ~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~-~ 113 (386)
T 2bnx_A 36 NPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPA-V 113 (386)
T ss_dssp SCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTT-S
T ss_pred CCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCC-C
Confidence 3344555554 3455556555521 1 345778899999999875555544445567889999999887 8
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhc
Q 043116 296 KSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDL 375 (482)
Q Consensus 296 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~l 375 (482)
+.++..+...|..+|..... .|..+.+++.+.. ... ..+..-+..+++.
T Consensus 114 ~~~r~~vleLL~alc~~~~~-------~G~~~~VL~Al~~---------------~~~---------~~e~~RF~~lv~~ 162 (386)
T 2bnx_A 114 PNMMIDAAKLLSALCILPQP-------EDMNERVLEAMTE---------------RAE---------MDEVERFQPLLDG 162 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCSS-------TTHHHHHHHHHHH---------------HHH---------HHTSCTTHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCC-------CChHHHHHHHHHH---------------HHH---------hCchhhHHHHHHH
Confidence 99999999989888863221 0113333333331 100 0112234445555
Q ss_pred CC-CCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHH
Q 043116 376 LP-CPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEM 440 (482)
Q Consensus 376 l~-~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~ 440 (482)
+. +.+.+.+..++..+..++...+... ..-.++..|...|..+.+..+-...++++...
T Consensus 163 l~~~~~~e~~~a~m~lIN~lv~~~~dl~------~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 163 LKSGTSIALKVGCLQLINALITPAEELD------FRVHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp TSTTSCHHHHHHHHHHHHHHHTTCSCHH------HHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHHCCCCCHH------HHHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 54 5566788888888888886654422 12345667788888888888877777776444
No 128
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=93.32 E-value=4.3 Score=37.64 Aligned_cols=140 Identities=14% Similarity=0.125 Sum_probs=83.3
Q ss_pred HHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC----C------CChHHHHHHHHHHHHHhCCChHhHHHHH-hCCCh
Q 043116 47 ATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMR----E------DYPQLQFEAARALTNIASGTSENTKVAI-DHGAV 115 (482)
Q Consensus 47 a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~----~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i 115 (482)
.+..|.-.+...+..-++.+. .+++..|+..|.. + .+.+.+..++.||..+.. +....+.++ ..+++
T Consensus 25 ~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i 102 (386)
T 2bnx_A 25 CLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGI 102 (386)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHH
T ss_pred HHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHH
Confidence 344444444433222245554 4566666666531 1 125678889999999987 555555555 44678
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hh-HHHHH----------HhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116 116 PIFVKLLASPSDDVREQAVWALGNVAGDSS-RC-RDFVL----------SQGALIPLLAELNEHAKLSMLRTATWTLSNF 183 (482)
Q Consensus 116 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L 183 (482)
..+...+.++++.++..++..|..+|..+. .. ...+. +..-+..++..+..+.+.+....++..+..+
T Consensus 103 ~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~l 182 (386)
T 2bnx_A 103 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 182 (386)
T ss_dssp HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 999999999999999999999998885443 22 22222 1123445565554444455555555555555
Q ss_pred hcCCC
Q 043116 184 CRGKP 188 (482)
Q Consensus 184 ~~~~~ 188 (482)
....+
T Consensus 183 v~~~~ 187 (386)
T 2bnx_A 183 ITPAE 187 (386)
T ss_dssp HTTCS
T ss_pred HCCCC
Confidence 55543
No 129
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=93.14 E-value=1 Score=39.60 Aligned_cols=136 Identities=13% Similarity=0.068 Sum_probs=90.6
Q ss_pred hhhHHHHHHHHhHhhcCChhhHHHHH-hcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--cCChHHH
Q 043116 253 RLVLTAALRTIGNIVTGDDFQTQCII-NCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVID--AGLIGPI 329 (482)
Q Consensus 253 ~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~~i~~L 329 (482)
......|+-.|-.++..-....+.+- +...+..|+ +.... .+.++..|+.+|+.+.+.+|..+..+.+ ..++..+
T Consensus 42 ~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l 119 (315)
T 3qml_C 42 IARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI 119 (315)
T ss_dssp HHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence 34566788888888764333333232 334444444 22334 6779999999999999999999888776 4556666
Q ss_pred HHHHhc-------CChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCC--CHHHHHHHHHHHHHHHH
Q 043116 330 VNLLQD-------AEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCP--DPQIVTVCLIGLENILK 396 (482)
Q Consensus 330 ~~ll~~-------~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~~l~~L~~l~~ 396 (482)
+.-|.. ...-+++.-+.+|.-|+... ..+ ....+..|.+++... ++.++.+++..+..++.
T Consensus 120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~-~~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTS-EDL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS-TTC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh-Hhh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 655543 23456777888888888742 111 133556666666555 88999999999999986
No 130
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=93.12 E-value=12 Score=40.79 Aligned_cols=288 Identities=9% Similarity=0.071 Sum_probs=161.1
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhc-CCCChHHHHHHHHHHHHHhCC-----ChHhHHHHHhC
Q 043116 39 DDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLM-REDYPQLQFEAARALTNIASG-----TSENTKVAIDH 112 (482)
Q Consensus 39 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~-~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~~~~~ 112 (482)
.++..+..|-..|.++-... +....+...|. ...++.+|..|+..|.+.... +++.+..+. .
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~p-----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-~ 92 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEKC-----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-N 92 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-H
T ss_pred CChHHHHHHHHHHHHHHhCc-----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-H
Confidence 36778888888888775542 13344444333 332389999999999987642 333443333 2
Q ss_pred CChHHHHHhhCC---CCHHHHHHHHHHHHHhhCCC-h-hhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC
Q 043116 113 GAVPIFVKLLAS---PSDDVREQAVWALGNVAGDS-S-RCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK 187 (482)
Q Consensus 113 g~i~~L~~ll~~---~~~~~~~~a~~~L~~l~~~~-~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~ 187 (482)
.+++.+...... .+..++.....++..++... | .. .++++.++..+.. +......++.+|..++.+.
T Consensus 93 ~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W------p~ll~~L~~~~~~--~~~~~e~~L~iL~~L~Eev 164 (1204)
T 3a6p_A 93 SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW------PDMLIELDTLSKQ--GETQTELVMFILLRLAEDV 164 (1204)
T ss_dssp HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC------TTHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc------hHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHH
Confidence 344444443221 45788888888888887321 1 11 1346667776632 3344666777888776541
Q ss_pred ---CCCChhh-----------hhhHHHHHHHHhcc-------------------CChhHHHHHHHHHHHhccCCcHHHHH
Q 043116 188 ---PQPPFNQ-----------IRPALRVLAQLIRS-------------------NDEKVLTDACRALAYLADGTNDKIQA 234 (482)
Q Consensus 188 ---~~~~~~~-----------~~~~~~~L~~ll~~-------------------~~~~~~~~~l~~L~~l~~~~~~~~~~ 234 (482)
....... ...+++.+..++.. .+..+...++.++.+....-+. ..
T Consensus 165 ~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~ 242 (1204)
T 3a6p_A 165 VTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SH 242 (1204)
T ss_dssp HTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HH
Confidence 1111110 11344444444432 1244667777787766654332 22
Q ss_pred HHHhC--cHHHHHHhhCCCChhhHHHHHHHHhHhhcCC--hhhHHHHHhc---CchHHHHHHhc-------CCCchhHHH
Q 043116 235 VIEAG--VCPRLVKLLGHRSRLVLTAALRTIGNIVTGD--DFQTQCIINC---GALRYLLGLLI-------HNHNKSIKK 300 (482)
Q Consensus 235 ~~~~~--~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~l~~~---~~i~~L~~ll~-------~~~~~~v~~ 300 (482)
+.+.. +++.+..++. ++.++..|+.||..++... +.....++.. ..+..++..+. +.++.++.+
T Consensus 243 i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k 320 (1204)
T 3a6p_A 243 ITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLK 320 (1204)
T ss_dssp HHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHH
T ss_pred HHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHH
Confidence 33332 6677776665 5679999999999999743 2221122211 11334454432 111456777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH-----------cCChHHHHHHHhcCChhHHHHHHHHHHHhhcC
Q 043116 301 EVCWIISNITAGNREQIQAVID-----------AGLIGPIVNLLQDAEFGTKKEAAWVISNATSG 354 (482)
Q Consensus 301 ~a~~~L~nl~~~~~~~~~~l~~-----------~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~ 354 (482)
..+..+..+.. . ...++. .++++.++.+..+++..+-..++.....+...
T Consensus 321 ~l~~ll~~lg~---~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 321 RLCQVLCALGN---Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHHHHHHH---H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHH---H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 77777777762 1 222222 13577777777777777777777766666553
No 131
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=93.09 E-value=2.2 Score=45.53 Aligned_cols=135 Identities=13% Similarity=0.145 Sum_probs=83.6
Q ss_pred hhHHHHHHHHhcc----CChhHHHHHHHHHHHhcc----CCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhh
Q 043116 196 RPALRVLAQLIRS----NDEKVLTDACRALAYLAD----GTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIV 267 (482)
Q Consensus 196 ~~~~~~L~~ll~~----~~~~~~~~~l~~L~~l~~----~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 267 (482)
...+..+..++.+ .++.++..++.+++.+.. ..+......+ ..+...+...+...+..-+..++++|+|+.
T Consensus 390 ~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g 468 (1056)
T 1lsh_A 390 RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRAKEEEIVLALKALGNAG 468 (1056)
T ss_dssp HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcCChHHHHHHHHHhhccC
Confidence 3455566666654 456777778888777662 1110000000 012334445556667777888999999997
Q ss_pred cCChhhHHHHHhcCchHHHHHHhcC------CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh--cCChh
Q 043116 268 TGDDFQTQCIINCGALRYLLGLLIH------NHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ--DAEFG 339 (482)
Q Consensus 268 ~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~--~~~~~ 339 (482)
. +. .++.|.+++.. +....++..|+|+|.++....++..+ +.+++++. ..+++
T Consensus 469 ~--p~---------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~E 529 (1056)
T 1lsh_A 469 Q--PN---------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSE 529 (1056)
T ss_dssp C--GG---------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHH
T ss_pred C--hh---------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChH
Confidence 5 32 34556666542 21457889999999999876665433 34566663 56889
Q ss_pred HHHHHHHHHHH
Q 043116 340 TKKEAAWVISN 350 (482)
Q Consensus 340 ~~~~a~~aL~~ 350 (482)
+|..|+..|..
T Consensus 530 vRiaA~~~Lm~ 540 (1056)
T 1lsh_A 530 LRIRSCIVFFE 540 (1056)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888887754
No 132
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=93.00 E-value=0.25 Score=38.11 Aligned_cols=79 Identities=8% Similarity=0.122 Sum_probs=57.4
Q ss_pred ChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHh-chHHHHHHhhcCC--------CHHHH
Q 043116 368 CVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEA-EGLEKIENLQSHD--------NNDIH 438 (482)
Q Consensus 368 ~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~l~~l~~~~--------~~~v~ 438 (482)
+++.|..-+.+.++.++.+++.+|..++..+.. .|...+++. ..++.+.+....+ ...|+
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~-----------~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR 118 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGS-----------EFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVR 118 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCH-----------HHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCH-----------HHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHH
Confidence 677888888888999999999999999876533 245554433 3444444444333 37899
Q ss_pred HHHHHHHHHhcCCCCCCCC
Q 043116 439 EMSVKILETYWCGRVVGPQ 457 (482)
Q Consensus 439 ~~a~~~l~~~~~~~~~~~~ 457 (482)
..|..+++-+|+++...+.
T Consensus 119 ~~AkEl~~ll~d~~~~~~~ 137 (140)
T 1vdy_A 119 ETAHETISAIFSEENGSGP 137 (140)
T ss_dssp HHHHHHHHHHTCCSSCCCC
T ss_pred HHHHHHHHHHhCcCCCCCC
Confidence 9999999999998887654
No 133
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=92.27 E-value=5.2 Score=34.59 Aligned_cols=99 Identities=8% Similarity=0.064 Sum_probs=70.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHh
Q 043116 32 MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAID 111 (482)
Q Consensus 32 l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 111 (482)
+++..+......+...+.....++...... +. ..+++.++.+..+++ .++|...+..+...+...++...
T Consensus 20 lln~A~~~~~~~kl~~L~qa~el~~~~dp~----ll-~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~---- 89 (257)
T 3gs3_A 20 WCNELVIASPSTKCELLAKVQETVLGSCAE----LA-EEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLP---- 89 (257)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHTTTTGG----GH-HHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH----
T ss_pred HHHHhhhcCcHHHHHHHHHHHHHHHccCHh----HH-HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHH----
Confidence 333333323368888999999987764221 12 336777888776766 89999999999998864444322
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 043116 112 HGAVPIFVKLLASPSDDVREQAVWALGNVA 141 (482)
Q Consensus 112 ~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 141 (482)
..++.|..+++++++.+...++.+..++.
T Consensus 90 -~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY 118 (257)
T 3gs3_A 90 -HVINVVSMLLRDNSAQVIKRVIQACGSIY 118 (257)
T ss_dssp -HHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 35678888899889999988888877773
No 134
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=91.50 E-value=4.1 Score=35.82 Aligned_cols=151 Identities=13% Similarity=0.120 Sum_probs=97.8
Q ss_pred hhHHHHHHHHhccC------ChhHHHHHHHHHHHhccCCcHHHHHHH-HhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 043116 196 RPALRVLAQLIRSN------DEKVLTDACRALAYLADGTNDKIQAVI-EAGVCPRLVKLLGHRSRLVLTAALRTIGNIVT 268 (482)
Q Consensus 196 ~~~~~~L~~ll~~~------~~~~~~~~l~~L~~l~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 268 (482)
..-+..+..++.++ +.+....++..|..++..-....+..- +...+..|. +.....+.+++.|.++|+...+
T Consensus 21 s~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLR 99 (315)
T 3qml_C 21 SSDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLR 99 (315)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHc
Confidence 34444555666654 455677788888888854333333332 334445554 3344567799999999999999
Q ss_pred CChhhHHHHHhc--CchHHHHHHhcC----C--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--Ch
Q 043116 269 GDDFQTQCIINC--GALRYLLGLLIH----N--HNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDA--EF 338 (482)
Q Consensus 269 ~~~~~~~~l~~~--~~i~~L~~ll~~----~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~ 338 (482)
++|.....+.+. .++..+..-|.. . ....+.+.-+.+|.-+...+.. + ....+..|.+++... ++
T Consensus 100 NNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~d~ 174 (315)
T 3qml_C 100 NNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNKDK 174 (315)
T ss_dssp TCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTTCH
T ss_pred cCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCCCH
Confidence 999888877653 445444443332 1 1346777888888888764321 1 234678888888766 89
Q ss_pred hHHHHHHHHHHHhh
Q 043116 339 GTKKEAAWVISNAT 352 (482)
Q Consensus 339 ~~~~~a~~aL~~l~ 352 (482)
.++..++..+..+.
T Consensus 175 ~~k~Kvl~li~d~f 188 (315)
T 3qml_C 175 QLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 99999988888776
No 135
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=90.50 E-value=0.45 Score=36.94 Aligned_cols=73 Identities=7% Similarity=0.016 Sum_probs=58.0
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHh
Q 043116 325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKV 397 (482)
Q Consensus 325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~ 397 (482)
.+..+..-+.+.++.++..|+..|-.++.++.+.....+....+++.+..+++..++.|+.+++..+......
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~ 115 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDE 115 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 4555666677889999999999999999988877776666666777777777777889999999988877654
No 136
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=90.34 E-value=11 Score=34.72 Aligned_cols=89 Identities=7% Similarity=0.101 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHh
Q 043116 42 KVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKL 121 (482)
Q Consensus 42 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 121 (482)
..+...+.-..+++.+. .+. .-.++++.++.+-.+++ .++|...+..|...+....+... .+++.|..+
T Consensus 40 ~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~L 108 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLL-----KLIANLNML 108 (386)
T ss_dssp THHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 46888888888876653 221 23568999999988888 89999999999998864444422 356788888
Q ss_pred hCCCCHHHHHHHHHHHHHhh
Q 043116 122 LASPSDDVREQAVWALGNVA 141 (482)
Q Consensus 122 l~~~~~~~~~~a~~~L~~l~ 141 (482)
+.++++.+...++.+..++.
T Consensus 109 L~d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 109 LRDENVNVVKKAILTMTQLY 128 (386)
T ss_dssp HTCSSHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHH
Confidence 88899999988888888773
No 137
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=89.85 E-value=0.65 Score=36.40 Aligned_cols=74 Identities=8% Similarity=-0.068 Sum_probs=61.0
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC------CCHHHHHHHHHHHHHHHHhc
Q 043116 325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC------PDPQIVTVCLIGLENILKVG 398 (482)
Q Consensus 325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~~l~~L~~l~~~~ 398 (482)
.+..|..-+.+.++.++..|+..|-.++.++.+.+...+....+++.|+.++.. .++.|+.+++..+.......
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 455666667889999999999999999999988888887778888888888863 56789999999888887543
No 138
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=89.64 E-value=1.2 Score=34.80 Aligned_cols=72 Identities=8% Similarity=-0.076 Sum_probs=60.0
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC------CCHHHHHHHHHHHHHHHH
Q 043116 325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC------PDPQIVTVCLIGLENILK 396 (482)
Q Consensus 325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~~l~~L~~l~~ 396 (482)
++..+..-+.+.++.++..|+..|-.++.++.+.+...+.+..+++.|..++.. .++.|+.+++..+.....
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 455666677889999999999999999999888888888888889999988874 467899999888877764
No 139
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=88.51 E-value=11 Score=32.43 Aligned_cols=140 Identities=16% Similarity=0.160 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhc
Q 043116 297 SIKKEVCWIISNITA-GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDL 375 (482)
Q Consensus 297 ~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~l 375 (482)
+.|.....-+..++. .++.... .+++.++.+..+.+.++|+..+..+...+.. .++.... +++.|..+
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~-----~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~-k~~l~~~-----~l~~L~~L 98 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAE-----EFLESVLSLAHDSNMEVRKQVVAFVEQVCKV-KVELLPH-----VINVVSML 98 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHHH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHhccCChHHHHHHHHHHHHHHHHH-HHHHHHH-----HHHHHHHH
Confidence 466666666666554 3343222 3666667766678899999999999888753 3333222 67788888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhchhccccCCCC--cccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043116 376 LPCPDPQIVTVCLIGLENILKVGEAEKNTDNIG--DVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYW 449 (482)
Q Consensus 376 l~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 449 (482)
+.++++.+.+++..+..+++...=..-...... ..+...+.+. ...+.+.++..+.+..++-.+.+.+++..
T Consensus 99 l~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~--~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 99 LRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILS--LIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHH--HHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH--HHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 888999999999988888876432221111000 0122333332 33566777788899999999999999865
No 140
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=88.18 E-value=0.91 Score=36.26 Aligned_cols=72 Identities=4% Similarity=-0.021 Sum_probs=56.4
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC-CCHHHHHHHHHHHHHHHH
Q 043116 325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC-PDPQIVTVCLIGLENILK 396 (482)
Q Consensus 325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~~l~~L~~l~~ 396 (482)
++..|.+-+.+.++.++..|+..|-.++.++.+.+...+....+++.|..++.. .++.|+.+++..+.....
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 455566667888999999999999999999888777676666777777777654 667899988887776654
No 141
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=87.78 E-value=2.7 Score=38.70 Aligned_cols=139 Identities=17% Similarity=0.167 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcC
Q 043116 298 IKKEVCWIISNITA-GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLL 376 (482)
Q Consensus 298 v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll 376 (482)
.|.....-+..++. .++. ++ .++++.++++-.+.+.++|+.++..|...+.. ..+.... +++.|..++
T Consensus 41 ~Kl~~L~q~~EL~l~~dps----Ll-~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~el~~~-----~l~~L~~LL 109 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPT----LL-DNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DIELLLK-----LIANLNMLL 109 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGG----GG-GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHH----HH-HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHHHHH-----HHHHHHHHH
Confidence 44455555555433 2332 12 36888899888888999999999999988763 3333322 677888888
Q ss_pred CCCCHHHHHHHHHHHHHHHHhchhcc-ccCCCC-cccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043116 377 PCPDPQIVTVCLIGLENILKVGEAEK-NTDNIG-DVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYW 449 (482)
Q Consensus 377 ~~~~~~v~~~~l~~L~~l~~~~~~~~-~~~~~~-~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 449 (482)
.++++.+.+++..+..+++...-... ..++.. ..+...+.+. ...+.+.++..+.|..++-.+.+.+++..
T Consensus 110 ~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~--~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 110 RDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVS--AMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH--HHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHH--HHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 88999999998888888774321111 100000 0122333332 23456666788899999999999999855
No 142
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=86.62 E-value=21 Score=33.52 Aligned_cols=236 Identities=13% Similarity=0.036 Sum_probs=126.9
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhh
Q 043116 105 NTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFC 184 (482)
Q Consensus 105 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~ 184 (482)
..+..++...+..|+.++.++|+.-|...-.+|..+.+.-...|..+... +-..+.+.+.......-....+.++..+.
T Consensus 154 ~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgSIi 232 (449)
T 2npp_B 154 IAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSII 232 (449)
T ss_dssp TGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHHHH
T ss_pred hhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHHHH
Confidence 34555666778899999999999999999999988875544455444332 23344555533333334556777777777
Q ss_pred cCCC-CCChhhhhhHHHHHHHHhccCC-hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHH
Q 043116 185 RGKP-QPPFNQIRPALRVLAQLIRSND-EKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRT 262 (482)
Q Consensus 185 ~~~~-~~~~~~~~~~~~~L~~ll~~~~-~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~ 262 (482)
.+-. ........-....|+.+..... .........|+......++.....+ +..|++.==..+..-...-+.-
T Consensus 233 nGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~e 307 (449)
T 2npp_B 233 NGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNE 307 (449)
T ss_dssp SSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHHHH
T ss_pred hccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHH-----HHHHHHhCCCCCchHHHHHHHH
Confidence 6642 2222333344555666665544 2233445566666555555443321 2222222111222222223334
Q ss_pred HhHhhcC-ChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---cCChHHHHHHHhc---
Q 043116 263 IGNIVTG-DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVID---AGLIGPIVNLLQD--- 335 (482)
Q Consensus 263 L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~~--- 335 (482)
|..+... .+.....+. .-+...+...+.+. +..|...|.....| +. +..++. ..++|.+...+..
T Consensus 308 leeile~~~~~ef~~i~-~~lF~~la~ci~S~-hfqVAErAL~~w~N-----~~-i~~li~~n~~~IlPii~p~L~~~s~ 379 (449)
T 2npp_B 308 LEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWNN-----EY-IMSLISDNAAKILPIMFPSLYRNSK 379 (449)
T ss_dssp HHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGGC-----HH-HHHHHHTTHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHhCCHHHHHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHCC-----HH-HHHHHHhchhhhHHhhHHHHHHHHH
Confidence 4444432 223222222 23667777888887 88888877644322 22 222332 1245666665532
Q ss_pred --CChhHHHHHHHHHHHhhcC
Q 043116 336 --AEFGTKKEAAWVISNATSG 354 (482)
Q Consensus 336 --~~~~~~~~a~~aL~~l~~~ 354 (482)
=+..++..+..++.-+...
T Consensus 380 ~HWn~~V~~la~~vlk~l~e~ 400 (449)
T 2npp_B 380 THWNKTIHGLIYNALKLFMEM 400 (449)
T ss_dssp CCSSTTHHHHHHHHHHHHHTT
T ss_pred HhcCHHHHHHHHHHHHHHHHH
Confidence 1567888888888766653
No 143
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=85.49 E-value=1.2 Score=35.52 Aligned_cols=74 Identities=12% Similarity=0.075 Sum_probs=57.1
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhC
Q 043116 27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIAS 100 (482)
Q Consensus 27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 100 (482)
.++..|.+.|++.++.++..|+..|-.+....+.....++....++..|+.++....++.|+..++..+...+.
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 46788888889999999999999999888876444455566677888888888763448899888887776654
No 144
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=85.49 E-value=18 Score=34.00 Aligned_cols=239 Identities=15% Similarity=0.116 Sum_probs=121.3
Q ss_pred HHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhC
Q 043116 64 EKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAG 142 (482)
Q Consensus 64 ~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~ 142 (482)
...++..++..|+.++.++| +.-|...-.+|..+-..-...|..+.. .+-..+.+++.. ....-....+.+++.+..
T Consensus 156 k~~id~~Fi~~Ll~lfdSeD-pRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fi~e~e~~nGIaeLLeilgSIin 233 (449)
T 2npp_B 156 KKYIDQKFVLQLLELFDSED-PRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIIN 233 (449)
T ss_dssp GGTSCHHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHSCTTTHHHHHH-HHHHHHHHHHHTCSCCSCHHHHHHHHHHHHS
T ss_pred hhhCCHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCHHHHHHHHHHHHh
Confidence 33445556778888888888 888888888887765433344433332 223445555432 111112245666766664
Q ss_pred CC-----hhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHH
Q 043116 143 DS-----SRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDA 217 (482)
Q Consensus 143 ~~-----~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~ 217 (482)
+- ++.+..+ ...|+.+.....-.........|+..++..++ .....++..|+..=-..++.-...-
T Consensus 234 Gfa~PLKeehk~fl-----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp----~L~~~vi~~LLk~WP~tns~KevlF 304 (449)
T 2npp_B 234 GFALPLKEEHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDS----TLTEPVVMALLKYWPKTHSPKEVMF 304 (449)
T ss_dssp SCCSSCCHHHHHHH-----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCG----GGHHHHHHHHHHTCCSSCHHHHHHH
T ss_pred ccCCCCcHHHHHHH-----HHHHHHHHccchhHHhHHHHHHHHHHHHhcCc----HhHHHHHHHHHHhCCCCCchHHHHH
Confidence 32 2222222 12222222111111222334455554444332 1122333333333223444444555
Q ss_pred HHHHHHhccCCc-HHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhc--CchHHHHHHhcC--
Q 043116 218 CRALAYLADGTN-DKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINC--GALRYLLGLLIH-- 292 (482)
Q Consensus 218 l~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~--~~i~~L~~ll~~-- 292 (482)
+.-+..+...-+ ..... +...++..+..++++++-.|.+.|+.... ++.....+.+. .++|.+...+..
T Consensus 305 L~eleeile~~~~~ef~~-i~~~lF~~la~ci~S~hfqVAErAL~~w~-----N~~i~~li~~n~~~IlPii~p~L~~~s 378 (449)
T 2npp_B 305 LNELEEILDVIEPSEFVK-IMEPLFRQLAKCVSSPHFQVAERALYYWN-----NEYIMSLISDNAAKILPIMFPSLYRNS 378 (449)
T ss_dssp HHHHHHHHTTCCHHHHHH-HHHHHHHHHHHHHTCSCHHHHHHHHGGGG-----CHHHHHHHHTTHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHhCCHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHC-----CHHHHHHHHhchhhhHHhhHHHHHHHH
Confidence 555555554332 22222 22346778888899999899988875443 23222222211 245666665522
Q ss_pred --CCchhHHHHHHHHHHHHhcCCHHHHHH
Q 043116 293 --NHNKSIKKEVCWIISNITAGNREQIQA 319 (482)
Q Consensus 293 --~~~~~v~~~a~~~L~nl~~~~~~~~~~ 319 (482)
.=+..++..+..++..+..-++.....
T Consensus 379 ~~HWn~~V~~la~~vlk~l~e~d~~lf~~ 407 (449)
T 2npp_B 379 KTHWNKTIHGLIYNALKLFMEMNQKLFDD 407 (449)
T ss_dssp TCCSSTTHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHCHHHHHH
Confidence 115679999998888887766664443
No 145
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=85.40 E-value=1.6 Score=35.21 Aligned_cols=72 Identities=8% Similarity=-0.018 Sum_probs=58.0
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC------CCHHHHHHHHHHHHHHHH
Q 043116 325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC------PDPQIVTVCLIGLENILK 396 (482)
Q Consensus 325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~~l~~L~~l~~ 396 (482)
++..|.+-+.+.++.++..|+..|-.++.++...+...+.+..+++.|+.++.. .+..|+.+++..+.....
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 455666777889999999999999999998777777777777888888888752 356899999988887764
No 146
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=84.69 E-value=0.91 Score=35.20 Aligned_cols=73 Identities=15% Similarity=0.136 Sum_probs=55.4
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhC
Q 043116 27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIAS 100 (482)
Q Consensus 27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 100 (482)
.++..+.+.|++.++.++..|+..|-.+....+.....++.+..++..++.+++..+ +.++..++..+...+.
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~-~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGH-PKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHH
Confidence 467888888899999999999999888887664433445556667777888887666 8899888887776653
No 147
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=84.58 E-value=25 Score=32.48 Aligned_cols=237 Identities=14% Similarity=0.040 Sum_probs=121.4
Q ss_pred hHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHH
Q 043116 103 SENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSN 182 (482)
Q Consensus 103 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~ 182 (482)
+...+..++...+..|+.++.++|+.-|...-.+|..+.+.-...|..+... +-..+.+.+.......-....+.++..
T Consensus 119 ~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~-innif~~fiye~e~~~GIaeLLeilgs 197 (403)
T 3fga_B 119 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGS 197 (403)
T ss_dssp HHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred hhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHhcCcccCCCHHHHHHHHHH
Confidence 3334455555678889999999999999999999998875554444444321 223344444222222233455566666
Q ss_pred hhcCCC-CCChhhhhhHHHHHHHHhccCC-hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHH
Q 043116 183 FCRGKP-QPPFNQIRPALRVLAQLIRSND-EKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAAL 260 (482)
Q Consensus 183 L~~~~~-~~~~~~~~~~~~~L~~ll~~~~-~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~ 260 (482)
+..+-. ........-....|+.+-.... .........|+......++.....+ +..+++.=-..++.-...-+
T Consensus 198 IinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL 272 (403)
T 3fga_B 198 IINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFL 272 (403)
T ss_dssp HHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHH
T ss_pred HHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCcHHHHHHH
Confidence 665432 1222233334455555555443 2233455556655555555443322 12222221112222222233
Q ss_pred HHHhHhhcCC-hhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---cCChHHHHHHHh--
Q 043116 261 RTIGNIVTGD-DFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVID---AGLIGPIVNLLQ-- 334 (482)
Q Consensus 261 ~~L~~l~~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~-- 334 (482)
.-+..+...- +.....+. ..+...+...+.++ +..|...|..... + +.+..++. ..++|.+...+.
T Consensus 273 ~Ele~iLe~~~~~~f~~i~-~~lf~~la~ci~S~-hfqVAErAL~~wn-----N-e~i~~li~~n~~~IlPii~p~L~~~ 344 (403)
T 3fga_B 273 NELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWN-----N-EYIMSLISDNAAKILPIMFPSLYRN 344 (403)
T ss_dssp HHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGG-----C-HHHHHHHHTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHCCC-CHHHHHHHHHHhc-----c-HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3444444322 22222222 23666777888888 8888877664432 1 22222332 124555554443
Q ss_pred --c-CChhHHHHHHHHHHHhhc
Q 043116 335 --D-AEFGTKKEAAWVISNATS 353 (482)
Q Consensus 335 --~-~~~~~~~~a~~aL~~l~~ 353 (482)
. =+..++..+..++..+..
T Consensus 345 ~~~HWn~~v~~l~~~vlk~l~e 366 (403)
T 3fga_B 345 SKTHWNKTIHGLIYNALKLFME 366 (403)
T ss_dssp TSCCSCHHHHHHHHHHHHHHHT
T ss_pred HHHccCHHHHHHHHHHHHHHHH
Confidence 2 267788888888877755
No 148
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=84.31 E-value=1.6 Score=34.16 Aligned_cols=75 Identities=11% Similarity=-0.005 Sum_probs=59.2
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC-----CCChHHHHHHHHHHHHHhC
Q 043116 26 FEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMR-----EDYPQLQFEAARALTNIAS 100 (482)
Q Consensus 26 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~-----~~~~~v~~~a~~~L~~l~~ 100 (482)
..++..+.+.+++.++.++..|+..|-.+....+.....++.+..++..|+.++.. ...+.++..++..+...+.
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 34688888899999999999999999999887644455666678888999998874 1237899988888777654
No 149
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=84.05 E-value=18 Score=33.43 Aligned_cols=225 Identities=14% Similarity=0.098 Sum_probs=103.9
Q ss_pred CHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCC-----
Q 043116 71 VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPS-DDVREQAVWALGNVAGDS----- 144 (482)
Q Consensus 71 ~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~----- 144 (482)
++..|+.++.++| +.-|...-.+|.++-..-...|..+.. .+-..+..++.... -.-....+.+++.+..+-
T Consensus 130 Fi~~Ll~lfdSeD-prER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLk 207 (403)
T 3fga_B 130 FVLQLLELFDSED-PRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLK 207 (403)
T ss_dssp HHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCC
T ss_pred HHHHHHHHcCCCC-hHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCch
Confidence 4566777777777 777777777777765433333333322 22244444443211 111112444444444211
Q ss_pred hhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHh
Q 043116 145 SRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYL 224 (482)
Q Consensus 145 ~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l 224 (482)
++.+..+. ..|+.+.....-.........|+......++. ....++..++..=-..++.-...-+.-+..+
T Consensus 208 eehk~fl~-----~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~----L~~~vi~~LLk~WP~tns~KevlFL~Ele~i 278 (403)
T 3fga_B 208 EEHKIFLL-----KVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST----LTEPVVMALLKYWPKTHSPKEVMFLNELEEI 278 (403)
T ss_dssp HHHHHHHH-----HTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGG----GHHHHHHHHHHTCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHcCCcchhhHHHHHHHHHHHHHhCch----hHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Confidence 11211111 12222221111112223344444444443321 1122333333222234444444555555555
Q ss_pred ccCCc-HHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhc--CchHHHHHHh----cCCCchh
Q 043116 225 ADGTN-DKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINC--GALRYLLGLL----IHNHNKS 297 (482)
Q Consensus 225 ~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~--~~i~~L~~ll----~~~~~~~ 297 (482)
...-+ .... -+...++..+..++.+++-.|.+.|+.... ++.....+.+. .++|.+...+ +..=+..
T Consensus 279 Le~~~~~~f~-~i~~~lf~~la~ci~S~hfqVAErAL~~wn-----Ne~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~ 352 (403)
T 3fga_B 279 LDVIEPSEFV-KIMEPLFRQLAKCVSSPHFQVAERALYYWN-----NEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKT 352 (403)
T ss_dssp HTTCCHHHHH-HHHHHHHHHHHHHHTCSCHHHHHHHHGGGG-----CHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHH
T ss_pred HHhCCHHHHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHhc-----cHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHH
Confidence 54333 2222 222246777888888999888888876542 22222211111 2344444333 3322677
Q ss_pred HHHHHHHHHHHHhcC
Q 043116 298 IKKEVCWIISNITAG 312 (482)
Q Consensus 298 v~~~a~~~L~nl~~~ 312 (482)
++..+..++..+..-
T Consensus 353 v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 353 IHGLIYNALKLFMEM 367 (403)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888888777653
No 150
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=83.30 E-value=1.9 Score=33.69 Aligned_cols=73 Identities=7% Similarity=0.014 Sum_probs=58.6
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC------CCChHHHHHHHHHHHHHhC
Q 043116 27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMR------EDYPQLQFEAARALTNIAS 100 (482)
Q Consensus 27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~------~~~~~v~~~a~~~L~~l~~ 100 (482)
.++..|.+.+++.++.++..|+..|-.+....+.....++....++..|++++.. .+ +.|+..++..+...+.
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~-~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTS-EKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCC-HHHHHHHHHHHHHHHH
Confidence 3688888999999999999999999999887644445666677788889999864 34 7899988888877764
No 151
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=83.02 E-value=33 Score=36.23 Aligned_cols=272 Identities=9% Similarity=0.079 Sum_probs=143.2
Q ss_pred HHHcchhhhhHHHHHHHHHHHhhcCCCCCChh----hhhhHHHHHHHHhc-cCChhHHHHHHHHHHHhccC-CcHHHHH-
Q 043116 162 AELNEHAKLSMLRTATWTLSNFCRGKPQPPFN----QIRPALRVLAQLIR-SNDEKVLTDACRALAYLADG-TNDKIQA- 234 (482)
Q Consensus 162 ~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~----~~~~~~~~L~~ll~-~~~~~~~~~~l~~L~~l~~~-~~~~~~~- 234 (482)
..+..+.+..-++.++.+++-+..+...-... ....+.|.|...+. .-.++....-..++..+..+ ++.+...
T Consensus 514 e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~L 593 (997)
T 1vsy_5 514 ESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKTF 593 (997)
T ss_dssp HHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHHH
T ss_pred HHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHHH
Confidence 33334556777888999999999887433222 33577888888887 34444443333333222211 1111111
Q ss_pred -------------------------------HHHh-----CcHHHHHHh-hCCCChhhHHHHHHHHhHhhcCC--h--hh
Q 043116 235 -------------------------------VIEA-----GVCPRLVKL-LGHRSRLVLTAALRTIGNIVTGD--D--FQ 273 (482)
Q Consensus 235 -------------------------------~~~~-----~~l~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~--~--~~ 273 (482)
+.+. ..-+.+..+ +.++...||+....+|..+.... + ..
T Consensus 594 ~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~ 673 (997)
T 1vsy_5 594 FCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELVFDHPYDQVRQAVAKLLTTLVQNQSNPSISD 673 (997)
T ss_dssp HHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCCSCCSCHHHHHHHHHHHHHHHHTSCCCCBSC
T ss_pred HHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhcccCCCC
Confidence 1111 111111111 46677889999998888877543 1 11
Q ss_pred HHHHH----hc----C------------chHHHHHHhcC---------CC----ch--h-HHHHHHHHHHHHhcCCHHHH
Q 043116 274 TQCII----NC----G------------ALRYLLGLLIH---------NH----NK--S-IKKEVCWIISNITAGNREQI 317 (482)
Q Consensus 274 ~~~l~----~~----~------------~i~~L~~ll~~---------~~----~~--~-v~~~a~~~L~nl~~~~~~~~ 317 (482)
...++ +. + .+..+.+-+.. +. +. . .+.-..|....+..+.....
T Consensus 674 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l 753 (997)
T 1vsy_5 674 PTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMARGPNKVLL 753 (997)
T ss_dssp HHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHHSSGGGHHHH
T ss_pred HHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHHHHHHHHHHhcCCCccch
Confidence 11122 11 0 02222222221 10 00 0 12223355555444333334
Q ss_pred HHHHHcCChHHHHHHHhcCCh-hHHHH-HHHHHHHhhcCC-CHHHHHHHHHcCChHHHHhcCC-CCCHHHHHHHHHHHHH
Q 043116 318 QAVIDAGLIGPIVNLLQDAEF-GTKKE-AAWVISNATSGG-THEQIKHLVREGCVKPLCDLLP-CPDPQIVTVCLIGLEN 393 (482)
Q Consensus 318 ~~l~~~~~i~~L~~ll~~~~~-~~~~~-a~~aL~~l~~~~-~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~l~~L~~ 393 (482)
..++..-++|.++.+....+. ++... +..++..++..- .++.... ++..+.+... +++. .+..++..+..
T Consensus 754 ~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~-----~l~~l~~~~~~s~sW-~R~~~L~~lq~ 827 (997)
T 1vsy_5 754 VPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAA-----IVDYVCSSNVALSSN-QTKLQLAFIQH 827 (997)
T ss_dssp HHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHH-----HHHHSSCTTTTSCSS-SHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHH-----HHHHHHHHHhcCCcH-HHHHHHHHHHH
Confidence 444443388888887765554 66666 666666665422 3333333 4566666665 5788 88888888776
Q ss_pred HHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCC-HHHHHHHHHHHHHhcCC
Q 043116 394 ILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDN-NDIHEMSVKILETYWCG 451 (482)
Q Consensus 394 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~-~~v~~~a~~~l~~~~~~ 451 (482)
++-..-.. - ..+ +.....+.+..++.++. .+|++.|...|..+...
T Consensus 828 ~~f~n~f~-l-----~~~------~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c 874 (997)
T 1vsy_5 828 FLSAELLQ-L-----TEE------EKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHN 874 (997)
T ss_dssp HHHHHTTT-S-----CTT------HHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHH-c-----CHH------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHc
Confidence 65421110 0 000 11234677888889999 99999999999776444
No 152
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=80.65 E-value=4.6 Score=32.44 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=53.6
Q ss_pred ChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhc------CCCHHHHHHH
Q 043116 368 CVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQS------HDNNDIHEMS 441 (482)
Q Consensus 368 ~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~------~~~~~v~~~a 441 (482)
++..|..-+.++++.+...++..|..+++.+... |...+....+++.|..+.. ..+..|++++
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~-----------Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~ki 119 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR-----------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKV 119 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH-----------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH-----------HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHH
Confidence 4566777778899999999999999999876552 5666666677777777764 2457888888
Q ss_pred HHHHHHhc
Q 043116 442 VKILETYW 449 (482)
Q Consensus 442 ~~~l~~~~ 449 (482)
..+++...
T Consensus 120 l~li~~W~ 127 (171)
T 1juq_A 120 IELLYSWT 127 (171)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887643
No 153
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=79.23 E-value=26 Score=32.24 Aligned_cols=127 Identities=14% Similarity=0.055 Sum_probs=71.8
Q ss_pred HhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116 104 ENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF 183 (482)
Q Consensus 104 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L 183 (482)
...+..++...+..|+.++.++|+.-|.....+|..+.+.-...|..+... +-..+.+.+.......-....+.++..+
T Consensus 165 ~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fiye~e~~~GIaeLLeilgsI 243 (392)
T 2jak_A 165 NIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSI 243 (392)
T ss_dssp HHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHH-HHHHHHHHHTSSCCCSCHHHHHHHHHHH
T ss_pred hhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccCCCCCHHHHHHHHHHH
Confidence 334445566678899999999999999999999988875444555444331 3334555553333334445666777777
Q ss_pred hcCCCC-CChhhhhhHHHHHHHHhccCC-hhHHHHHHHHHHHhccCCcHH
Q 043116 184 CRGKPQ-PPFNQIRPALRVLAQLIRSND-EKVLTDACRALAYLADGTNDK 231 (482)
Q Consensus 184 ~~~~~~-~~~~~~~~~~~~L~~ll~~~~-~~~~~~~l~~L~~l~~~~~~~ 231 (482)
..+-.. ...+...-....++.+.+... .........|+......++..
T Consensus 244 Ingfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L 293 (392)
T 2jak_A 244 INGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTL 293 (392)
T ss_dssp HHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGG
T ss_pred HhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchh
Confidence 766421 222222334445555555433 222334445555555444433
No 154
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=77.93 E-value=1.6 Score=36.99 Aligned_cols=74 Identities=11% Similarity=0.088 Sum_probs=55.5
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhC
Q 043116 27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIAS 100 (482)
Q Consensus 27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 100 (482)
.++..|.+.|++.++.+++.|+..|-.+....+.....++.+..++..|..+++....+.|+..++..+...+.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 36788888899999999999999998888765443445555666777777777654437888888887776653
No 155
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=77.14 E-value=3.4 Score=35.01 Aligned_cols=73 Identities=12% Similarity=0.072 Sum_probs=56.7
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCC-CCCHHHHHHHHHHHHHHHHh
Q 043116 325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP-CPDPQIVTVCLIGLENILKV 397 (482)
Q Consensus 325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~l~~L~~l~~~ 397 (482)
.+..|..-+.+.++.++..|+..|..++.++.......+....+++.|..+++ ..++.|+.+++..+......
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 45556666778999999999999999999888777677666667777766665 35678999999888887654
No 156
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=75.40 E-value=15 Score=38.89 Aligned_cols=187 Identities=14% Similarity=0.104 Sum_probs=110.1
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcc---hhhhhHHHHHHHHHH--HhhcCCC
Q 043116 114 AVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNE---HAKLSMLRTATWTLS--NFCRGKP 188 (482)
Q Consensus 114 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~---~~~~~~~~~a~~~L~--~L~~~~~ 188 (482)
++.-|+++--+..+++|..|-.+|......-+..+.. +++.++..|.. ..+.+-.+-|+++|. .+... -
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~-~ 207 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK-L 207 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH-G
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH-H
Confidence 4566777777889999999999999998766665554 46778888854 334445555665544 11111 1
Q ss_pred CCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCC------------------------cHHHHHH---------
Q 043116 189 QPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGT------------------------NDKIQAV--------- 235 (482)
Q Consensus 189 ~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~------------------------~~~~~~~--------- 235 (482)
.........+++.++.....+.|+++..+-.+...+.... ....+..
T Consensus 208 ~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~ 287 (997)
T 1vsy_5 208 MTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKRE 287 (997)
T ss_dssp GGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHH
T ss_pred hcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 2344455677777777777777777665554433333210 0000000
Q ss_pred -HH---hCcHHHHHHhh-CCCC--hhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHH
Q 043116 236 -IE---AGVCPRLVKLL-GHRS--RLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISN 308 (482)
Q Consensus 236 -~~---~~~l~~L~~ll-~~~~--~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~n 308 (482)
.. .++...++.+. .+.. +.....++..|.++....+. .....++..+++.+.++ ++.+|..|..++..
T Consensus 288 ~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~----~~~~~~v~~~~~~l~~d-hp~~R~~a~~~l~~ 362 (997)
T 1vsy_5 288 YYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLES----KPDKRAVFSIISQISTK-HPEIIHLVVKSLLS 362 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSC----CCCHHHHHHHHGGGGGC-CHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHhhcCC-CHHHHHHHHHHHHH
Confidence 11 12333334544 2344 67777777776566532221 11123566788888888 99999999988866
Q ss_pred Hhc
Q 043116 309 ITA 311 (482)
Q Consensus 309 l~~ 311 (482)
+..
T Consensus 363 il~ 365 (997)
T 1vsy_5 363 TCN 365 (997)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 157
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=74.51 E-value=7.3 Score=30.73 Aligned_cols=73 Identities=11% Similarity=0.085 Sum_probs=55.6
Q ss_pred ChHHHHHHHh-cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHH-HHhcCC---CCCHHHHHHHHHHHHHHHHh
Q 043116 325 LIGPIVNLLQ-DAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKP-LCDLLP---CPDPQIVTVCLIGLENILKV 397 (482)
Q Consensus 325 ~i~~L~~ll~-~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~-L~~ll~---~~~~~v~~~~l~~L~~l~~~ 397 (482)
++..|..-+. +.++.++..|+..|-.++.++.+.....+.+..+++. |+.++. .++..|+.+++..+......
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 4455666666 5789999999999999999988888777777777777 677663 23458999999888887653
No 158
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=73.91 E-value=2.3 Score=35.90 Aligned_cols=73 Identities=10% Similarity=0.062 Sum_probs=53.9
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHh
Q 043116 27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIA 99 (482)
Q Consensus 27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~ 99 (482)
.++..|.+.|++.++.++..|+..|-.+....+.....++.+..++..|+.++....+++++..++..+...+
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 3677888888999999999999999988876533334455566677778887764433788887777766655
No 159
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=72.40 E-value=9.6 Score=29.25 Aligned_cols=74 Identities=18% Similarity=0.165 Sum_probs=53.1
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcC-ChHHHHhcCCCCC--------HHHHHHHHHHHHHHH
Q 043116 325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREG-CVKPLCDLLPCPD--------PQIVTVCLIGLENIL 395 (482)
Q Consensus 325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~-~l~~L~~ll~~~~--------~~v~~~~l~~L~~l~ 395 (482)
+++.|.+-|.+.++.++..|+..|..++.++++.+...+...- .|..+.+.-..++ ..|+..|-+++.-++
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 6667777888888999999999999999999998888877642 2222332222222 258888888888777
Q ss_pred Hhc
Q 043116 396 KVG 398 (482)
Q Consensus 396 ~~~ 398 (482)
...
T Consensus 130 d~~ 132 (140)
T 1vdy_A 130 SEE 132 (140)
T ss_dssp CCS
T ss_pred CcC
Confidence 543
No 160
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=67.76 E-value=45 Score=27.86 Aligned_cols=134 Identities=6% Similarity=-0.046 Sum_probs=77.5
Q ss_pred chhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc-cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHH
Q 043116 166 EHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR-SNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRL 244 (482)
Q Consensus 166 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L 244 (482)
.++.-+.+..++..+....... ....++.+-.++. .++..+....+.+++.+....++. +.+.+
T Consensus 65 ~s~~~E~r~la~~~l~~~~~~~-------~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~--------~~~~i 129 (220)
T 2b6c_A 65 QKTEREYQYVAIDLALQNVQRF-------SLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE--------LPTIF 129 (220)
T ss_dssp TSSSHHHHHHHHHHHHHTGGGC-------CHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG--------HHHHH
T ss_pred cCchhHHHHHHHHHHHHHHhhC-------CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH--------HHHHH
Confidence 3333444555555555443211 1233333344443 456677766666666655333322 23567
Q ss_pred HHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043116 245 VKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVID 322 (482)
Q Consensus 245 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 322 (482)
.....+++.-++..|+-.+..... ...... .++.+-..+.++ +..|++..+|+|..++..+++....++.
T Consensus 130 ~~W~~s~~~w~rR~ai~~~l~~~~--~~~~~~-----~~~i~~~~~~d~-~~yV~kavgW~Lr~~~k~~~~~v~~fl~ 199 (220)
T 2b6c_A 130 ALFYGAENFWNRRVALNLQLMLKE--KTNQDL-----LKKAIIYDRTTE-EFFIQKAIGWSLRQYSKTNPQWVEELMK 199 (220)
T ss_dssp HHHTTCSSHHHHHHHHHTTTTCGG--GCCHHH-----HHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHH--CCCHHH-----HHHHHHHhCCCh-HHHHHHHHHHHHHHHHhhCHHHHHHHHh
Confidence 888899998888887664432221 111111 233333466666 8899999999999999988887766664
No 161
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=66.51 E-value=17 Score=33.73 Aligned_cols=131 Identities=11% Similarity=0.057 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhCCChHhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHc-
Q 043116 88 QFEAARALTNIASGTSENTKVAIDHGAVPIFV-KLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELN- 165 (482)
Q Consensus 88 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~- 165 (482)
+.-++..+.-+..+.+.. +.+..++ ..+.+..+..+..++++++|+.......+..+........++..+.
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 444666666655533221 2233333 3444567888999999999999665534444432222445555552
Q ss_pred ------chhhhhHHHHHHHHHHHhhcCC--CCCChhhhhhHHHHHHHHhc---------cCChhHHHHHHHHHHHhccCC
Q 043116 166 ------EHAKLSMLRTATWTLSNFCRGK--PQPPFNQIRPALRVLAQLIR---------SNDEKVLTDACRALAYLADGT 228 (482)
Q Consensus 166 ------~~~~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~~~~L~~ll~---------~~~~~~~~~~l~~L~~l~~~~ 228 (482)
...+..++..++..+.|++... .... ..+.+.+..++. ..+++....++-+|+++....
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~----~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1234567777888888888643 1111 233344555554 358899999999999998543
Q ss_pred c
Q 043116 229 N 229 (482)
Q Consensus 229 ~ 229 (482)
+
T Consensus 392 ~ 392 (425)
T 3pst_A 392 P 392 (425)
T ss_dssp H
T ss_pred H
Confidence 3
No 162
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=64.67 E-value=11 Score=31.71 Aligned_cols=73 Identities=7% Similarity=0.033 Sum_probs=54.0
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCC-CCCHHHHHHHHHHHHHHHHh
Q 043116 325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP-CPDPQIVTVCLIGLENILKV 397 (482)
Q Consensus 325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~l~~L~~l~~~ 397 (482)
.+..|..-+.+.++.++..|+..|..++.++.+.....+.+..+++.|..+++ ..+.+|+.+++..+......
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYA 116 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 34455566678899999999999999999876666566556666777666665 35678998888888777654
No 163
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=64.54 E-value=1.6e+02 Score=31.94 Aligned_cols=108 Identities=9% Similarity=0.100 Sum_probs=63.8
Q ss_pred CcHHHHH----HhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH
Q 043116 239 GVCPRLV----KLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNR 314 (482)
Q Consensus 239 ~~l~~L~----~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 314 (482)
..++.++ .++.+.++.++..+......+....+...+ ..++..|+..+-++ ...-...|..+|..++...+
T Consensus 396 ~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~q----qeVl~~Lv~hi~sg-~~~eVd~ALdvL~~L~~~~~ 470 (1323)
T 3s4w_B 396 DICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQ----QEVVGALVTHVCSG-TEAEVDTALDVLLELIVLNA 470 (1323)
T ss_dssp TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHHH----HHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhH----HHHHHHHHhhhcCC-CcHHHHHHHHHHHHHHhcCH
Confidence 3444444 446778888888887766666554433211 23556677766666 43334458888888887666
Q ss_pred HHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 043116 315 EQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATS 353 (482)
Q Consensus 315 ~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~ 353 (482)
........ ++..+++.+++-+..-.+.....|+.++.
T Consensus 471 ~~l~~~a~--~l~giLD~l~~l~~~QiRklf~iL~~laf 507 (1323)
T 3s4w_B 471 SAMRLNAA--FVKGILDYLENMSPQQIRKIFCILSTLAF 507 (1323)
T ss_dssp HHHHHTHH--HHHGGGGGGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHH--HHHHHHHhhcCCCHHHHHHHHHHHHHHHc
Confidence 65444322 45555666665554444555666766654
No 164
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=62.48 E-value=16 Score=33.29 Aligned_cols=130 Identities=12% Similarity=0.057 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhCCChHhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHc-
Q 043116 88 QFEAARALTNIASGTSENTKVAIDHGAVPIFV-KLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELN- 165 (482)
Q Consensus 88 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~- 165 (482)
+.-++..++-+..+.+. .+.+..++ ..+.+..+..+..++++++|+.......+..+........++..+.
T Consensus 180 ~FP~LDLLRl~v~~~~~-------~~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPY-------SSDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCSC-------GGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCCh-------HHHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 44455566655543221 12333333 3344567888999999999999665534444432111233444441
Q ss_pred ------chhhhhHHHHHHHHHHHhhcCC--CCCChhhhhhHHHHHHHHhc---------cCChhHHHHHHHHHHHhccCC
Q 043116 166 ------EHAKLSMLRTATWTLSNFCRGK--PQPPFNQIRPALRVLAQLIR---------SNDEKVLTDACRALAYLADGT 228 (482)
Q Consensus 166 ------~~~~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~~~~L~~ll~---------~~~~~~~~~~l~~L~~l~~~~ 228 (482)
...+..++..++..+.|++... .... ....+.+..++. ..+++....++-+|+++....
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~----~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 2235567777788888888642 1111 233344555554 358899999999999998543
No 165
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=61.80 E-value=11 Score=29.63 Aligned_cols=74 Identities=9% Similarity=0.035 Sum_probs=53.0
Q ss_pred ccHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHH-HHHhhcCC--CChHHHHHHHHHHHHHhC
Q 043116 27 EILPTMVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPR-FVEFLMRE--DYPQLQFEAARALTNIAS 100 (482)
Q Consensus 27 ~~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~-L~~ll~~~--~~~~v~~~a~~~L~~l~~ 100 (482)
.++..|.+.++ +.++.++..|+..|-.+....+.....++.+..++.. |++++... ....|+..++..+...+.
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 36777888887 5789999999999998888764444555666777877 77877432 115788888777776654
No 166
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=60.00 E-value=94 Score=27.64 Aligned_cols=180 Identities=14% Similarity=0.151 Sum_probs=106.3
Q ss_pred hhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHH-HhcC-------CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 043116 253 RLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLG-LLIH-------NHNKSIKKEVCWIISNITAGNREQIQAVIDAG 324 (482)
Q Consensus 253 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~-ll~~-------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 324 (482)
..++++.++.+.......++. + .+....+|.|+. +|.+ ..+++|-.-.+.++..+-..-.+.+..+++ .
T Consensus 43 R~vKkeiLkLiet~i~~~~d~-~-~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~-~ 119 (321)
T 1w9c_A 43 RTVKRETLKLISGWVSRSNDP-Q-MVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFD-A 119 (321)
T ss_dssp HHHHHHHHHHHHHHHTTCSCH-H-HHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHcCCCH-H-HHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHH-H
Confidence 346777777777777644332 2 222356666664 3321 124555555555555554433333444444 3
Q ss_pred ChHHHHHHHh---cCChhHHHHHHHHHHHhhcCC-------CHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHH
Q 043116 325 LIGPIVNLLQ---DAEFGTKKEAAWVISNATSGG-------THEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENI 394 (482)
Q Consensus 325 ~i~~L~~ll~---~~~~~~~~~a~~aL~~l~~~~-------~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l 394 (482)
++..-++++. ++-|+-|..-...|..+..++ ++++.+. +++.++-..+|+++++...++.++..+
T Consensus 120 VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fkl-----vidsiiWa~kH~~r~V~e~gL~il~~l 194 (321)
T 1w9c_A 120 VFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKL-----VLDSIIWAFKHTMRNVADTGLQILFTL 194 (321)
T ss_dssp HHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHH-----HHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH-----HHHHHHHHcCCCCchHHHHHHHHHHHH
Confidence 5556666666 456888887777776665433 3344333 566777789999999999999999999
Q ss_pred HHhchhccccCCCCcccHHHHHHHHhchHHHHHHh----hcCCCHHHHHHHHHHHHHhc
Q 043116 395 LKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENL----QSHDNNDIHEMSVKILETYW 449 (482)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l----~~~~~~~v~~~a~~~l~~~~ 449 (482)
+....+. +.+...|-+.-.++.++++ .++....-.+.-..+|..+|
T Consensus 195 l~n~~~~---------~~~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf 244 (321)
T 1w9c_A 195 LQNVAQE---------EAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMF 244 (321)
T ss_dssp HHHHHHC---------HHHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHH
T ss_pred HHHHhcC---------hHHHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHH
Confidence 8876541 1245555555556666665 23333334555566666666
No 167
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=58.98 E-value=36 Score=29.21 Aligned_cols=102 Identities=13% Similarity=0.086 Sum_probs=62.2
Q ss_pred hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcc-------hhhhhHHHHHHHHHHHhhcCC--CCCCh
Q 043116 122 LASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNE-------HAKLSMLRTATWTLSNFCRGK--PQPPF 192 (482)
Q Consensus 122 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-------~~~~~~~~~a~~~L~~L~~~~--~~~~~ 192 (482)
+.+.++..+..++++++|+..+....+..+........++..+.. ..+..++..++..+.|++... .....
T Consensus 99 ~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~~ 178 (253)
T 3gae_A 99 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDL 178 (253)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCT
T ss_pred cCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccchH
Confidence 445677889999999999997665345555433223344444311 235567777888888888642 11111
Q ss_pred hhhhhHHHHHHHHhc---------cCChhHHHHHHHHHHHhccC
Q 043116 193 NQIRPALRVLAQLIR---------SNDEKVLTDACRALAYLADG 227 (482)
Q Consensus 193 ~~~~~~~~~L~~ll~---------~~~~~~~~~~l~~L~~l~~~ 227 (482)
.....+..++. ..+++....++-+++++...
T Consensus 179 ----e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 179 ----ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp ----THHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 22333444433 23778888888888888853
No 168
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=58.76 E-value=52 Score=30.59 Aligned_cols=130 Identities=10% Similarity=0.090 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHhCcHHHHH-HhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcC
Q 043116 214 LTDACRALAYLADGTNDKIQAVIEAGVCPRLV-KLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIH 292 (482)
Q Consensus 214 ~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~ 292 (482)
+-.++..++-+..+.+.. +.+..++ ..+....+..+.-+++++.|+..+.......+........+++.+..
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 555777776666443321 1222222 33345567889999999999987554333333332334556655532
Q ss_pred C-------CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh---------cCChhHHHHHHHHHHHhhc
Q 043116 293 N-------HNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ---------DAEFGTKKEAAWVISNATS 353 (482)
Q Consensus 293 ~-------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~---------~~~~~~~~~a~~aL~~l~~ 353 (482)
. .+..++..++..+-|++....... .+......+.+++. ..+++....++.||++++.
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~---~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC---SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 1 145688888889999986211100 00123445555555 3588899999999999986
No 169
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=58.44 E-value=33 Score=29.45 Aligned_cols=130 Identities=10% Similarity=0.090 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHhCcHHHHH-HhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcC
Q 043116 214 LTDACRALAYLADGTNDKIQAVIEAGVCPRLV-KLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIH 292 (482)
Q Consensus 214 ~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~ 292 (482)
+-.++..++-+..+.+.. +.+..++ ..+.+..+..+.-+++++.|+..+.....+.+........++..+.+
T Consensus 71 ~fP~lDllRl~~~~~~~~-------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~ 143 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 143 (253)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHH
Confidence 455666666555443311 1222222 22334567789999999999998555233333333234444444322
Q ss_pred C-------CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh---------cCChhHHHHHHHHHHHhhc
Q 043116 293 N-------HNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ---------DAEFGTKKEAAWVISNATS 353 (482)
Q Consensus 293 ~-------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~---------~~~~~~~~~a~~aL~~l~~ 353 (482)
. .+..++..++..+-|++....... .+......+.+.+. ..+++....++.|++++..
T Consensus 144 ~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~---~~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 144 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSC---SCTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCCchhHHHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 1 156788889999999986210000 01122334444444 2377888889999999985
No 170
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=55.47 E-value=64 Score=29.64 Aligned_cols=25 Identities=20% Similarity=0.060 Sum_probs=16.8
Q ss_pred CcHHHHHHhhCCCChhhHHHHHHHH
Q 043116 239 GVCPRLVKLLGHRSRLVLTAALRTI 263 (482)
Q Consensus 239 ~~l~~L~~ll~~~~~~v~~~a~~~L 263 (482)
.++..+..++.+++-.|.+.|+...
T Consensus 338 ~lF~~la~ci~S~hfqVAErAL~~w 362 (392)
T 2jak_A 338 PLFRQLAKCVSSPHFQVAERALYYW 362 (392)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 4556677777777777777776543
No 171
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=54.36 E-value=56 Score=29.69 Aligned_cols=130 Identities=10% Similarity=0.087 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHhCcHHHHH-HhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcC
Q 043116 214 LTDACRALAYLADGTNDKIQAVIEAGVCPRLV-KLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIH 292 (482)
Q Consensus 214 ~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~ 292 (482)
+-.++..++-+..+.+.. +.+..++ ..+....+..+.-+++++.|+..+.......+........+++.+..
T Consensus 180 ~FP~LDLLRl~v~~~~~~-------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCChH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 566777777666443311 2222232 23345567889999999999987554233333222223334444321
Q ss_pred ----C---CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh---------cCChhHHHHHHHHHHHhhc
Q 043116 293 ----N---HNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ---------DAEFGTKKEAAWVISNATS 353 (482)
Q Consensus 293 ----~---~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~---------~~~~~~~~~a~~aL~~l~~ 353 (482)
. .+..++..++..+-|++....... .+......+.+.+. ..+++....++.||++++.
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~---~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC---SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 1 145788888899999986211100 00123445555555 3588899999999999986
No 172
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=53.26 E-value=22 Score=27.69 Aligned_cols=74 Identities=12% Similarity=-0.009 Sum_probs=52.7
Q ss_pred ChHHHHHHHhc-CChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHH-HHhcCCC---CCHHHHHHHHHHHHHHHHhc
Q 043116 325 LIGPIVNLLQD-AEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKP-LCDLLPC---PDPQIVTVCLIGLENILKVG 398 (482)
Q Consensus 325 ~i~~L~~ll~~-~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~-L~~ll~~---~~~~v~~~~l~~L~~l~~~~ 398 (482)
.+..|..-+.. .++.++..|+..|-.++.++...+...+....++.- |..++.. ....|+.+++..+.......
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F 132 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGF 132 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 44455555653 577888889999999999888887777666556653 6666653 23479999999888887543
No 173
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=47.43 E-value=1.2e+02 Score=25.13 Aligned_cols=134 Identities=8% Similarity=-0.108 Sum_probs=80.4
Q ss_pred HHHHHhhCCCChhhHHHHHHHHhHhhcC-ChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 043116 242 PRLVKLLGHRSRLVLTAALRTIGNIVTG-DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAV 320 (482)
Q Consensus 242 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 320 (482)
..+..+..++.-+.+..|+.++...... .+.. ++.+-.++.+..+-.+....|.+++.++...++
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~~~---------l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~----- 123 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSLEE---------VVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLT----- 123 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHHH---------HHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGG-----
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCHHH---------HHHHHHHhccCCcHHHHHHHHHHHHHHHHHChH-----
Confidence 3444555666777777787777765422 2211 222333444443555665555556555543332
Q ss_pred HHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchh
Q 043116 321 IDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEA 400 (482)
Q Consensus 321 ~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~ 400 (482)
.+.+.+.....+++.-+++.|+.++.......+++. .++.+..++.+++.-|++.+-++|..+....+.
T Consensus 124 ---~~~~~i~~W~~s~~~w~rR~ai~~~l~~~~~~~~~~--------~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~ 192 (220)
T 2b6c_A 124 ---ELPTIFALFYGAENFWNRRVALNLQLMLKEKTNQDL--------LKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQ 192 (220)
T ss_dssp ---GHHHHHHHHTTCSSHHHHHHHHHTTTTCGGGCCHHH--------HHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHH
T ss_pred ---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCHHH--------HHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHH
Confidence 134556778888999999888876654443333322 244555578888888999999999988865433
No 174
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=45.91 E-value=1e+02 Score=23.74 Aligned_cols=77 Identities=9% Similarity=0.171 Sum_probs=55.2
Q ss_pred HHHHHHHhCcHHHHHHhhCC------CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCC-chhHHHHHH
Q 043116 231 KIQAVIEAGVCPRLVKLLGH------RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNH-NKSIKKEVC 303 (482)
Q Consensus 231 ~~~~~~~~~~l~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~~v~~~a~ 303 (482)
....+++.|++..+-..|.. ++..++...+.+|.++-- ....+.++|+-..++.+-+++. .+..|+.|-
T Consensus 53 l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI----~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~ 128 (145)
T 2xpp_A 53 LQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKI----HKEHLVTSGVGKIVYFYSINPKESKEVRASAK 128 (145)
T ss_dssp THHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC----CHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCC----CHHHhhcCCCCcchhhhhcCCccCHHHHHHHH
Confidence 45678889999999998854 456799999999998842 2455667777777766665542 567787777
Q ss_pred HHHHHHhc
Q 043116 304 WIISNITA 311 (482)
Q Consensus 304 ~~L~nl~~ 311 (482)
..+...++
T Consensus 129 ~Li~~WsR 136 (145)
T 2xpp_A 129 ALVQKWTN 136 (145)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766543
No 175
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=45.20 E-value=48 Score=25.08 Aligned_cols=96 Identities=20% Similarity=0.172 Sum_probs=58.3
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhcccc
Q 043116 325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNT 404 (482)
Q Consensus 325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~ 404 (482)
+++.|+..+++.+..+...++..|..+-. . .++.+.+.+.++|..=+. ++|..+....+..
T Consensus 32 ~lp~LL~WLQD~NWPvA~~i~~~L~~~~~----~---------l~p~I~~vl~s~D~~W~y---wil~~lv~~~~~~--- 92 (134)
T 3ut4_A 32 IIFDLLKWLQDYNWPIAKDILPVVVLHQS----I---------AMPHILTILQGNDIMWKY---WVIKLMIPYLIYP--- 92 (134)
T ss_dssp HHHHHHGGGSCTTSTTHHHHHHHHHHTHH----H---------HHHHHHHHHHSSCHHHHH---HHHHHHGGGCCHH---
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHccH----h---------hHHHHHHHHHcCChHHHH---HHHHHHHHcCCHH---
Confidence 67789999999998888888877775421 2 344455555555544333 4444444322111
Q ss_pred CCCCcccHHHHHHHHhchHHHHHHhhcCC-----CHHHHHHHHHHHHHhcCCC
Q 043116 405 DNIGDVNQYAQLVEEAEGLEKIENLQSHD-----NNDIHEMSVKILETYWCGR 452 (482)
Q Consensus 405 ~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-----~~~v~~~a~~~l~~~~~~~ 452 (482)
....+ ..-|..+..++ ..++.+.|..++++||.+.
T Consensus 93 --------~~~~l-----~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~~~~~ 132 (134)
T 3ut4_A 93 --------NKQLV-----KSELERLSSLEIINEDIREIVNLSKDYLHFYYPDK 132 (134)
T ss_dssp --------HHHHH-----HHHHHHHHTCCCSSGGGHHHHHHHHHHHHHHC---
T ss_pred --------HHHHH-----HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcccc
Confidence 12222 44566666654 5788999999999998753
No 176
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=44.73 E-value=2.1e+02 Score=27.11 Aligned_cols=144 Identities=14% Similarity=0.141 Sum_probs=90.3
Q ss_pred cHHHHHHHh-cC-C----CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCC
Q 043116 28 ILPTMVAGV-WS-D----DNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASG 101 (482)
Q Consensus 28 ~i~~l~~~l-~s-~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 101 (482)
.++.+.+.+ .+ + |++. .+..+.++.... .-+.+.+-=-+..++..|.+++ +.+...|+.++.
T Consensus 74 ll~~Ik~iL~~~~~~~~lD~~~---Li~Ll~~il~~~---~Fd~VLevysve~i~~aL~S~~-~~l~~~~ckVI~----- 141 (500)
T 3vld_A 74 LLATIKRFLTSNVSYDSLNYDY---LLDVVDKLVPMA---DFDDVLEVYSAEDLVKALRSEI-DPLKVAACRVIE----- 141 (500)
T ss_dssp HHHHHHHHHHCSSCCTTCCHHH---HHHHHHHHHHHS---CHHHHHHHSCHHHHHHHHTSSC-HHHHHHHHHHHH-----
T ss_pred HHHHHHHHHcCCccccccCHHH---HHHHHHHHHhcC---CHHHHHHhCCHHHHHHHHhcCC-hHHHHHHHHHhc-----
Confidence 345555666 23 1 4554 344444444432 1455666667888999999987 899999999888
Q ss_pred ChHhHHHHHhCCChHHHHHhhCCCCHH---HHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHH
Q 043116 102 TSENTKVAIDHGAVPIFVKLLASPSDD---VREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATW 178 (482)
Q Consensus 102 ~~~~~~~~~~~g~i~~L~~ll~~~~~~---~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~ 178 (482)
.+..+..+...+++..+++++-+++.. +....=.++..++ .+.-.|+.+.+. .. +++..+++..++-.......
T Consensus 142 ~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Ls-sdeLirrril~n-nl-~lL~~vK~~~~~i~~sRLLd 218 (500)
T 3vld_A 142 NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLS-TDELIRRRLFDN-NL-PYLVSVKGRMETVSFVRLID 218 (500)
T ss_dssp TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHT-TSHHHHHHHHTT-TH-HHHHHHHHHCCHHHHHHHHH
T ss_pred ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcC-chHHHHHHHHHH-hH-HHHHHHhcCCCceeHHHHHH
Confidence 244556777889999999988765432 5555556667775 444456666543 44 45555545556555555666
Q ss_pred HHHHhhcC
Q 043116 179 TLSNFCRG 186 (482)
Q Consensus 179 ~L~~L~~~ 186 (482)
.+.-+...
T Consensus 219 ll~il~~~ 226 (500)
T 3vld_A 219 FLTIEFQF 226 (500)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhcc
Confidence 66555554
No 177
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=42.80 E-value=41 Score=28.35 Aligned_cols=77 Identities=10% Similarity=0.129 Sum_probs=52.6
Q ss_pred cHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 043116 240 VCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQA 319 (482)
Q Consensus 240 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 319 (482)
..+.+...+.++++-++..++-.+..... ..... ...+.+...+.++ +..|++..+|+|..++..+++....
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~l~~~~--~~d~~-----~~~~~i~~~~~d~-~~yV~kAvgW~Lr~~~k~~p~~v~~ 203 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQLKYKQ--KMDEE-----LLFWIIGQLHSSK-EFFIQKAIGWVLREYAKTNPDVVWE 203 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTTTTCGG--GCCHH-----HHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHh--CCCHH-----HHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 34667788888898888887655422211 11111 1233445566666 8899999999999999988998877
Q ss_pred HHHcC
Q 043116 320 VIDAG 324 (482)
Q Consensus 320 l~~~~ 324 (482)
+++.+
T Consensus 204 fl~~~ 208 (232)
T 3jxy_A 204 YVQNN 208 (232)
T ss_dssp HHHHS
T ss_pred HHHHC
Confidence 77644
No 178
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=41.89 E-value=1.9e+02 Score=25.73 Aligned_cols=162 Identities=11% Similarity=0.108 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcch--------hhhhHHHHHHHHHHHhhcCCCCCChhhhhhH
Q 043116 127 DDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEH--------AKLSMLRTATWTLSNFCRGKPQPPFNQIRPA 198 (482)
Q Consensus 127 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--------~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~ 198 (482)
..++...+..+.......+.. +.+ ....+|+++..+..+ .++++......++..+-..-......+...+
T Consensus 43 R~vKkeiLkLiet~i~~~~d~-~~v-~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~V 120 (321)
T 1w9c_A 43 RTVKRETLKLISGWVSRSNDP-QMV-AENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAV 120 (321)
T ss_dssp HHHHHHHHHHHHHHHTTCSCH-HHH-HHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCH-HHH-HHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 356667777777777554432 222 234788887644221 2456666666666666544333344455677
Q ss_pred HHHHHHHhcc---CChhHHHHHHHHHHHhccCCcHHHHHHHH------hCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC
Q 043116 199 LRVLAQLIRS---NDEKVLTDACRALAYLADGTNDKIQAVIE------AGVCPRLVKLLGHRSRLVLTAALRTIGNIVTG 269 (482)
Q Consensus 199 ~~~L~~ll~~---~~~~~~~~~l~~L~~l~~~~~~~~~~~~~------~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 269 (482)
+.+-+.+++. +-|+.|..-...|..+..+.-.. +.. ..+++.++-..+++...+...++.++..+...
T Consensus 121 Fe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~a---l~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n 197 (321)
T 1w9c_A 121 FECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPA---FLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQN 197 (321)
T ss_dssp HHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTH---HHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHH---HHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 7777778874 46899988888777776432211 111 12456677778999999999888877666542
Q ss_pred ---ChhhHHHHHhcC---chHHHHHHhcCC
Q 043116 270 ---DDFQTQCIINCG---ALRYLLGLLIHN 293 (482)
Q Consensus 270 ---~~~~~~~l~~~~---~i~~L~~ll~~~ 293 (482)
.++....+.+.- ++..+..++.++
T Consensus 198 ~~~~~~~~~~Fy~~fy~~il~~if~VlTDs 227 (321)
T 1w9c_A 198 VAQEEAAAQSFYQTYFCDILQHIFSVVTDT 227 (321)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 233344444432 333344444443
No 179
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=35.67 E-value=69 Score=22.94 Aligned_cols=35 Identities=9% Similarity=0.309 Sum_probs=30.4
Q ss_pred HHHHHHhchHHHHHHhhcC-CCHHHHHHHHHHHHHh
Q 043116 414 AQLVEEAEGLEKIENLQSH-DNNDIHEMSVKILETY 448 (482)
Q Consensus 414 ~~~l~~~~~~~~l~~l~~~-~~~~v~~~a~~~l~~~ 448 (482)
.+.+++.+.=..+..|-.+ ++++|...|..++...
T Consensus 47 ~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~W 82 (103)
T 1wjt_A 47 IQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNW 82 (103)
T ss_dssp HHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 7788899988899999876 9999999999999864
No 180
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=34.02 E-value=2.1e+02 Score=23.92 Aligned_cols=133 Identities=12% Similarity=0.032 Sum_probs=75.6
Q ss_pred HHHHhhCCCChhhHHHHHHHHhHhhcC-ChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHH-HHHHHHhcCCHHHHHHH
Q 043116 243 RLVKLLGHRSRLVLTAALRTIGNIVTG-DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVC-WIISNITAGNREQIQAV 320 (482)
Q Consensus 243 ~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~-~~L~nl~~~~~~~~~~l 320 (482)
.+..+..++..+.+..|+..+...... .+. .++.+-.++....+-.+....| .+++.+....++
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~---------~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~----- 130 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKYKKHINET---------HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE----- 130 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHTGGGCCGG---------GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG-----
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhCCHH---------HHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH-----
Confidence 444555666666777777766543221 121 2233344444443444443332 233333322222
Q ss_pred HHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchh
Q 043116 321 IDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEA 400 (482)
Q Consensus 321 ~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~ 400 (482)
...+.+.....+++.-+++.|+..+.......++.. .+..+..++.+++.-|+..+-++|..+....+.
T Consensus 131 ---~~~~~l~~W~~s~~~w~rR~ai~~~l~~~~~~d~~~--------~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~ 199 (232)
T 3jxy_A 131 ---LISAYIPKWIASDNIWLQRAAILFQLKYKQKMDEEL--------LFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPD 199 (232)
T ss_dssp ---GGGGTHHHHHHSSCHHHHHHHHHTTTTCGGGCCHHH--------HHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHH
T ss_pred ---HHHHHHHHHhcCCchHHHHHHHHHHHHHHhCCCHHH--------HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHH
Confidence 245667788889999999888876543333333332 344566678888889999999999988865433
No 181
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=31.42 E-value=5.5e+02 Score=28.04 Aligned_cols=265 Identities=11% Similarity=0.044 Sum_probs=127.4
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh---hHHHHHHh------CChHHHHHHHcchhhhhHHHHHHHHHHHhhc
Q 043116 115 VPIFVKLLASPSDDVREQAVWALGNVAGDSSR---CRDFVLSQ------GALIPLLAELNEHAKLSMLRTATWTLSNFCR 185 (482)
Q Consensus 115 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~------~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~ 185 (482)
...|.+++.. ++.+....+.+|+++.-+... .+..+++. ..+|.+++.+.+..+..-...++..+..-..
T Consensus 194 ~~~L~~lL~~-~~~L~~~iLdaLs~L~Ls~~~l~~vr~~vl~~L~s~~~e~LP~lIkFLL~s~t~~~~~evI~~LR~~L~ 272 (1323)
T 3s4w_B 194 GKELGELLVQ-NTSLTVPILDVFSSLRLDPNFLSKIRQLVMGKLSSVRLEDFPVIVKFLLHSVTDTTSLEVIAELRENLN 272 (1323)
T ss_dssp HHHHHHHHHH-CSTTHHHHHHHHHHSCCCHHHHHHHHHHHHHSTTSSCTTHHHHHHHHHHHSCSSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CcchHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCChhhhHHHHHHHHHhCCHhhHHHHHHHHHHHcC
Confidence 4556666654 445677788888888744322 23333321 3377788877554433333333434433221
Q ss_pred CC----CC-------------------CChhhhhhHHHHHHHHhcc---CChhHHHHHHHHHHHhccCCcHHHHHHHHhC
Q 043116 186 GK----PQ-------------------PPFNQIRPALRVLAQLIRS---NDEKVLTDACRALAYLADGTNDKIQAVIEAG 239 (482)
Q Consensus 186 ~~----~~-------------------~~~~~~~~~~~~L~~ll~~---~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~ 239 (482)
.. |. ..........-.++..+++ .+..+....++.+.++....+ ..
T Consensus 273 ~~~~~~p~~~~~s~~~~k~~~~~~~~~~~~~s~~~~~~lild~lks~l~~~k~i~eAwlK~I~~~~~~~~--------hk 344 (1323)
T 3s4w_B 273 VQQFILPSRIQASQSKLKSKGLASSSGNQENSDKDCIVLVFDVIKSAIRYEKTISEAWFKAIERIESAAE--------HK 344 (1323)
T ss_dssp CC----------------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHGGGSTT--------CC
T ss_pred ccccccchhhhhhhhhhhccccccCCccccccccchHHHHHHHHHHHHhcChHHHHHHHHHHhCCCcccc--------cc
Confidence 10 00 0000001111123333332 245666666777766654322 13
Q ss_pred cHHHHHHhh-CCCChhhHHHHHHHHhHhhcCCh---hhHHHHH------hcCchHHHH----HHhcCCCchhHHHHHHHH
Q 043116 240 VCPRLVKLL-GHRSRLVLTAALRTIGNIVTGDD---FQTQCII------NCGALRYLL----GLLIHNHNKSIKKEVCWI 305 (482)
Q Consensus 240 ~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~---~~~~~l~------~~~~i~~L~----~ll~~~~~~~v~~~a~~~ 305 (482)
.++.++-++ -+.+...+..+-.++.+-+.... ......+ -...++.++ .++.+. ++.++..+...
T Consensus 345 ~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL~~~f~siL~La~~Ll~S~-~~~v~~Fg~~l 423 (1323)
T 3s4w_B 345 SLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVLKDICPSILLLAQTLFHSQ-DQRIILFGSLL 423 (1323)
T ss_dssp THHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSS-SHHHHHHHHHH
T ss_pred hhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 344444333 22334456666666666554321 1111111 123344443 445566 88888877766
Q ss_pred HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHH
Q 043116 306 ISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVT 385 (482)
Q Consensus 306 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~ 385 (482)
-..+...... ..+..++..|+...-+++..-...|+.+|..++.. .+........ .+..+++.++.=+..-..
T Consensus 424 Y~~lF~~fd~----~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~-~~~~l~~~a~--~l~giLD~l~~l~~~QiR 496 (1323)
T 3s4w_B 424 YKYAFKFFDT----YCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVL-NASAMRLNAA--FVKGILDYLENMSPQQIR 496 (1323)
T ss_dssp HHHHHHSSCH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-CHHHHHHTHH--HHHGGGGGGGGCCHHHHH
T ss_pred HHHHHHhccc----hhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhc-CHHHHhHHHH--HHHHHHHhhcCCCHHHHH
Confidence 6665543222 22234556666665566555455588888888764 3443332111 344455555554444344
Q ss_pred HHHHHHHHHHH
Q 043116 386 VCLIGLENILK 396 (482)
Q Consensus 386 ~~l~~L~~l~~ 396 (482)
+...+|..+.-
T Consensus 497 klf~iL~~laf 507 (1323)
T 3s4w_B 497 KIFCILSTLAF 507 (1323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 45677776653
No 182
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=30.64 E-value=1.2e+02 Score=25.61 Aligned_cols=76 Identities=11% Similarity=0.139 Sum_probs=51.6
Q ss_pred HHHHHHhhCCCChhhHHHHHH----HHhHhhcC--ChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH
Q 043116 241 CPRLVKLLGHRSRLVLTAALR----TIGNIVTG--DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNR 314 (482)
Q Consensus 241 l~~L~~ll~~~~~~v~~~a~~----~L~~l~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~ 314 (482)
.+.+...+.+++.-++..+.. .+..+... +..... .+++.+...+.++ +..+++.+.|+|..+...++
T Consensus 110 ~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~-----~~l~~i~~~l~~~-~~~v~kAi~W~Lr~~gk~~~ 183 (235)
T 1t06_A 110 QDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKIS-----DMLEMVKDTIHHS-PERTKSAMNNFLNTVAISYV 183 (235)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHH-----HHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHH-----HHHHHHHHHccCC-hHHHHHHHHHHHHHHHhhCH
Confidence 356777888888888888877 55552211 112222 2445555677788 89999999999999988777
Q ss_pred HHHHHHHH
Q 043116 315 EQIQAVID 322 (482)
Q Consensus 315 ~~~~~l~~ 322 (482)
+.....++
T Consensus 184 ~~~~~al~ 191 (235)
T 1t06_A 184 PLHEKAVE 191 (235)
T ss_dssp GGHHHHHH
T ss_pred HHHHHHHH
Confidence 76655554
No 183
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=29.34 E-value=39 Score=26.30 Aligned_cols=75 Identities=9% Similarity=0.009 Sum_probs=50.5
Q ss_pred hccHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHH-HHHhhcCC--CChHHHHHHHHHHHHHhC
Q 043116 26 FEILPTMVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPR-FVEFLMRE--DYPQLQFEAARALTNIAS 100 (482)
Q Consensus 26 ~~~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~-L~~ll~~~--~~~~v~~~a~~~L~~l~~ 100 (482)
..++..|.+.++ +.++.++..|+..|-.+....+...-.++.+..++.- |++++... ....|+..++..+...+.
T Consensus 52 keA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 52 KDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 336777888887 4578888889988888887664433444444455543 56666532 214789999888888876
No 184
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=29.29 E-value=2.1e+02 Score=22.60 Aligned_cols=78 Identities=9% Similarity=0.118 Sum_probs=57.1
Q ss_pred HHHHHHHHhCcHHHHHHhhCC------CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCC-chhHHHHH
Q 043116 230 DKIQAVIEAGVCPRLVKLLGH------RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNH-NKSIKKEV 302 (482)
Q Consensus 230 ~~~~~~~~~~~l~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~~v~~~a 302 (482)
.....+++.|++..+-..|.. ++-.++...+.+|.++-- ....+.++|+-..++-+-+++. .+..|..|
T Consensus 67 ~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lPI----~~e~Lk~SglGkvV~~l~k~~~et~~nkrla 142 (170)
T 3nfq_A 67 NLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLPV----KTEHLKESGLGRVVIFYTKSKRVEAQLARLA 142 (170)
T ss_dssp GGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC----CHHHHHHHSHHHHHHHHHHCTTSCHHHHHHH
T ss_pred HHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCCC----CHHHHhhCCCCceeeehhcCCcccHHHHHHH
Confidence 455678889999999998854 455799999999998742 2345666776666666665542 56788888
Q ss_pred HHHHHHHhc
Q 043116 303 CWIISNITA 311 (482)
Q Consensus 303 ~~~L~nl~~ 311 (482)
-..+...+.
T Consensus 143 ~~Li~~WsR 151 (170)
T 3nfq_A 143 EKLIAEWTR 151 (170)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHH
Confidence 888888775
No 185
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=26.76 E-value=1.5e+02 Score=24.23 Aligned_cols=111 Identities=12% Similarity=0.098 Sum_probs=63.6
Q ss_pred CChHHHHHhhCC------CCHHHHHHHHHHHHHhhCCChhh-HHHHHHhCChHHHHHHHcchh--hhhHHHHHHHHHHHh
Q 043116 113 GAVPIFVKLLAS------PSDDVREQAVWALGNVAGDSSRC-RDFVLSQGALIPLLAELNEHA--KLSMLRTATWTLSNF 183 (482)
Q Consensus 113 g~i~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~l~~~l~~~~--~~~~~~~a~~~L~~L 183 (482)
..+|.++.++.+ .+.......+.....+.....-. ...+. ..+|.++..+-... ...++..|+..+..+
T Consensus 40 ~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH--~LipsvLtCll~k~l~~~~LRd~AA~lL~~I 117 (196)
T 4atg_A 40 QLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLH--QILPSLLTCVIGKSIVDDDVRKMSADIVKYI 117 (196)
T ss_dssp TTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHH--HHHHHHHHHHHCTTCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHH--HHHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence 356777665542 35555555566665555322110 00111 14666666663321 126888899999999
Q ss_pred hcCCCCCChhhhhhHHHHHHHHhccCC--hhHHHHHHHHHHHhc
Q 043116 184 CRGKPQPPFNQIRPALRVLAQLIRSND--EKVLTDACRALAYLA 225 (482)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~L~~ll~~~~--~~~~~~~l~~L~~l~ 225 (482)
++.-..........+...+.+.+.+++ .....-|+..|..+.
T Consensus 118 ~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 118 YDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred HHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH
Confidence 987544444445677777777776543 445555666666665
No 186
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=25.33 E-value=5.6e+02 Score=26.19 Aligned_cols=101 Identities=10% Similarity=0.053 Sum_probs=62.5
Q ss_pred chhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhcc---CChhHHHHHHHHHHHhcc---CCcHHHHHHHHhC
Q 043116 166 EHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRS---NDEKVLTDACRALAYLAD---GTNDKIQAVIEAG 239 (482)
Q Consensus 166 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~---~~~~~~~~~l~~L~~l~~---~~~~~~~~~~~~~ 239 (482)
.+.+..+...+..++.+|+.-.|.....+..+++..+...|.+ ..+.-...++.+|..++. ..+.....+. .
T Consensus 349 fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~~yr~hl~--~ 426 (799)
T 1vsy_4 349 QNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDKLYRVHIT--N 426 (799)
T ss_dssp TCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTSTTGGGHHH--H
T ss_pred CcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCcccHHHHH--H
Confidence 5567778888999999999987766667777888877777776 556666667777766551 1111111111 2
Q ss_pred cHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 043116 240 VCPRLVKLLGHRSRLVLTAALRTIGNIVT 268 (482)
Q Consensus 240 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 268 (482)
++..+++-+...|+.-...++..+..++.
T Consensus 427 lL~l~LpgID~ND~~KT~~tl~fi~~i~s 455 (799)
T 1vsy_4 427 VLSMLVSKLDMNDTNLTSNLINGIVSIAA 455 (799)
T ss_dssp HHHHHHHTCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCcccHHHHHHHHHHHHHHHH
Confidence 34444444555666555556666655543
No 187
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=24.43 E-value=3.9e+02 Score=27.32 Aligned_cols=116 Identities=9% Similarity=0.046 Sum_probs=68.3
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHc----c--hhhhhHHHHHHH
Q 043116 105 NTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELN----E--HAKLSMLRTATW 178 (482)
Q Consensus 105 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~----~--~~~~~~~~~a~~ 178 (482)
.++.+++ -+.|.+...+.+.+..+...+..++.+++.-.|.+++.+ +|.++..+. . -.++.-...++.
T Consensus 332 ~~~~fV~-~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lV-----lP~vL~r~y~sLe~~~l~e~Hrl~~aL~ 405 (799)
T 1vsy_4 332 CHEEIVE-IFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLI-----YDKILIDLYDTLADQFINSRHRIISSLK 405 (799)
T ss_dssp HHHHHHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHH-----HHHHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCcccee-----hHHHHHHHHHHhccccccchhHHHHHHH
Confidence 3444443 234555666778999999999999999997666444443 444444432 2 133333444555
Q ss_pred HHHHhhcCCC--CCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 043116 179 TLSNFCRGKP--QPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLAD 226 (482)
Q Consensus 179 ~L~~L~~~~~--~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~ 226 (482)
++..+++.-. ..-......++..+++-++.+|+.--..++..+..++.
T Consensus 406 ~l~~~~r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s 455 (799)
T 1vsy_4 406 QFTRVIRFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAA 455 (799)
T ss_dssp HHHTTHHHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHH
Confidence 5555554211 11122334556666666778888877777777776653
No 188
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=24.26 E-value=2.4e+02 Score=21.51 Aligned_cols=71 Identities=6% Similarity=-0.077 Sum_probs=51.5
Q ss_pred chHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 043116 282 ALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATS 353 (482)
Q Consensus 282 ~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~ 353 (482)
++..+.+.+... .+.-|-.+.+.+-.++..........+..++.+.+.+.....++..+......+...-.
T Consensus 44 Iv~~i~~~i~k~-~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~ 114 (144)
T 1sz9_A 44 FVDAIESRIEKC-MPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLN 114 (144)
T ss_dssp HHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhccC-CHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhC
Confidence 445566666666 78888899999999987322224456667788888888877788888888887777653
No 189
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=22.59 E-value=1.4e+02 Score=22.29 Aligned_cols=60 Identities=8% Similarity=0.031 Sum_probs=40.4
Q ss_pred hHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 043116 157 LIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLAD 226 (482)
Q Consensus 157 i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~ 226 (482)
+...++-| +.+.+.+.....|++.+.-. ...++..+...+....++-+...+..+-.+..
T Consensus 10 l~~~L~~L-~~s~~sI~~~s~w~l~h~~~---------a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ 69 (132)
T 4flb_A 10 LDRKFQSV-TNTMESIQGLSSWCIENKKH---------HSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQ 69 (132)
T ss_dssp HHHHHHHC-CSSHHHHHHHHHHHHHTGGG---------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-cccHHHHHHHHHHHHHhHHH---------HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Confidence 33445555 45566778888888876432 25677777777777777777777777776664
No 190
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=20.84 E-value=2.6e+02 Score=20.78 Aligned_cols=57 Identities=14% Similarity=0.147 Sum_probs=36.5
Q ss_pred HHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 043116 159 PLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLA 225 (482)
Q Consensus 159 ~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~ 225 (482)
..+.-| +.+.+.+...+.|++.+.-. ...++..+...+....++-+...+..+-.+.
T Consensus 11 ~~L~~L-~~s~~sI~~~s~w~l~~~~~---------a~~iv~~i~~~l~~~~~~~KL~~LYLindIl 67 (135)
T 4fu3_A 11 KKLSEL-SNSQQSVQTLSLWLIHHRKH---------AGPIVSVWHRELRKAKSNRKLTFLYLANDVI 67 (135)
T ss_dssp HHHHHC-CSSTTHHHHHHHHHHHTGGG---------HHHHHHHHHHHHHHSCTTTHHHHHHHHHHHH
T ss_pred HHHHHc-cccHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 344555 34556777778888876432 2566777777777666666677777666664
No 191
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=20.10 E-value=3.5e+02 Score=21.93 Aligned_cols=111 Identities=13% Similarity=0.088 Sum_probs=69.3
Q ss_pred ChHHHHHHHcch-----hhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccC---ChhHHHHHHHHHHHhccC
Q 043116 156 ALIPLLAELNEH-----AKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSN---DEKVLTDACRALAYLADG 227 (482)
Q Consensus 156 ~i~~l~~~l~~~-----~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~---~~~~~~~~l~~L~~l~~~ 227 (482)
.+|.++..+.+. .+.......+.....|..+..-.-......++|.++.++-.. ...+|..++..+..++..
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~ 120 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDT 120 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 466666665322 245666777778888888765555556678888888776432 227999999999998843
Q ss_pred CcHHHHHHHHhCcHHHHHHhhCCCC--hhhHHHHHHHHhHhh
Q 043116 228 TNDKIQAVIEAGVCPRLVKLLGHRS--RLVLTAALRTIGNIV 267 (482)
Q Consensus 228 ~~~~~~~~~~~~~l~~L~~ll~~~~--~~v~~~a~~~L~~l~ 267 (482)
...... -.+..+...+.+.+.+++ .....-|+..|..+.
T Consensus 121 ~~~~y~-~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 121 YSRSYK-TLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp HTTTST-THHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred hCccCc-hHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH
Confidence 221111 123345667777666543 345566777766654
Done!