BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043117
(359 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A4VKA3|FADB_PSEU5 Fatty acid oxidation complex subunit alpha OS=Pseudomonas stutzeri
(strain A1501) GN=fadB PE=3 SV=1
Length = 715
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 80/192 (41%), Gaps = 48/192 (25%)
Query: 157 PTLEESSFQHK---IEDVIEPSEVNHELLIEVIDG-------------TMEIKNVEM--- 197
PT+ F + +E V+E +V H +L EV +G T+ I +
Sbjct: 384 PTMSYGDFGNVDIVVEAVVENPKVKHAVLAEV-EGHVREDAIIASNTSTISISYLAQALK 442
Query: 198 ---------FPNDVHISDLVDAAKSFRQSGTQLDSLETSSSLQWFIRNVQDRIILSTLRR 248
F N VH+ LV+ + + S T + ++++ + + + ++++
Sbjct: 443 RPENFCGMHFFNPVHMMPLVEVIRGEKTSETAI-----ATTVAYAKKMGKSPVVVNDCPG 497
Query: 249 FVVKTANKSRHLFEYFEGDEMIVAHLVGGVDAFIKPSQ-----GWPLSNSPLKLISLKSS 303
F+V +R LF YF G +AH GVD F++ + GWP+ + L + +
Sbjct: 498 FLV-----NRVLFPYFGGFARAIAH---GVD-FVRADKVMEKFGWPMGPAYLMDVVGMDT 548
Query: 304 DHHSKGISLSFF 315
HH + + F
Sbjct: 549 GHHGRDVMAEGF 560
>sp|P25823|TUD_DROME Maternal protein tudor OS=Drosophila melanogaster GN=tud PE=1 SV=2
Length = 2515
Score = 35.0 bits (79), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 13/117 (11%)
Query: 178 NHELLIEVIDGTMEIKNVEMFPNDVHISDLVDAAKSFRQSGTQLDSLETSSSLQWFIRNV 237
N EL ++ + ++ + N ++ +L+ K+ RQS + + LE + V
Sbjct: 547 NFELTVQAPESVGSMQTCHLNQNGTNMLELLRQLKNSRQSYKKAEQLENDDA-------V 599
Query: 238 QDRIILSTLRRFVVKTANKSR------HLFEYFEGDEMIVAHLVGGVDAFIKPSQGW 288
+ R I S +V K AN + +F Y+ ++ + L+ G +K Q W
Sbjct: 600 EIRFIDSPSNFYVQKVANIGKFEQLMDEMFSYYNANQRVPDQLILGAPCIVKCDQEW 656
>sp|Q17FB8|GLT25_AEDAE Glycosyltransferase 25 family member OS=Aedes aegypti GN=AAEL003481
PE=3 SV=1
Length = 607
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 16/99 (16%)
Query: 32 VEDSNRLESDLEEL-NCALDLIASEGSQNAKEDRQVFCPARAEDQVCPPHTEDQSDLIKI 90
+E + LE DLE+L N + +I G+ N KED + F P +D++ H
Sbjct: 275 LEQGDPLEKDLEQLTNTKVYIINEHGAINLKEDLKHFVPKVPKDKMGVSH---------- 324
Query: 91 HEDHRFEILELESQIEKNKIILNSLQDLDFVLKRFDAVE 129
++ LE + E+ + N+ +L ++ F AV+
Sbjct: 325 -----IYMINLERRPERRNKMFNNFDELGLDVEFFPAVD 358
>sp|A1STE4|DNAK_PSYIN Chaperone protein DnaK OS=Psychromonas ingrahamii (strain 37)
GN=dnaK PE=3 SV=1
Length = 640
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 15/117 (12%)
Query: 247 RRFVVKTANKSRHLFEYFEGDEMIVAHLVGGVDAFIKPSQGWPLSNSPLKLISLKSSDHH 306
+ F V + N HL G E L+ + A K QG+ L+N PL + +K +
Sbjct: 213 KTFEVLSTNGDTHL-----GGEDFDNRLINFLVAEFKTQQGFDLTNDPLAMQRVKEAAEK 267
Query: 307 SK---------GISLSFFCRVEEAANSLDVHI-RQNLSSFVDGVEKILLEQMRVELH 353
+K I+L + + L++ I R L S V+ + K LE +R+ L
Sbjct: 268 AKIELSSAQQTDINLPYITADQSGPKHLNIKITRAKLESLVEDMVKSTLEPLRIALK 324
>sp|Q6FK21|EIF3A_CANGA Eukaryotic translation initiation factor 3 subunit A OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=TIF32 PE=3 SV=1
Length = 951
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 91 HEDHRFEILELESQIEKNKIILNSLQDLDFVLKRFDAVEQIEDTLTGLKVIDFDGKCFRL 150
++ + +L++E++ + ++I + ++D D + R DA + TL + ++FDG+ F+
Sbjct: 347 YQSRSYRLLDVETKPTRKEVIQSIVED-DTIFSRVDAETK---TLYEIMEVEFDGESFKG 402
Query: 151 SMQTYIPTLEESSF 164
+ +P LE S+
Sbjct: 403 KFEAILPKLEGESY 416
>sp|Q5L4Z0|SYS_CHLAB Serine--tRNA ligase OS=Chlamydophila abortus (strain S26/3) GN=serS
PE=3 SV=1
Length = 424
Score = 32.3 bits (72), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 23/186 (12%)
Query: 3 LEHLKEELKTVEAESSKISNEIETLTRTQVEDSNRLESDLEELNCALDLIAS--EGSQNA 60
+ HLK E + ++++ +SN+I + Q ED + + ++E ++ L + E ++
Sbjct: 37 IRHLKTETEALQSQRKLLSNQIHK-AKAQGEDVSSMMDNVERISQDLAKLEPLLEQKEST 95
Query: 61 KEDRQVFCPARAED--QVCPPHTEDQSDLIKIHEDHRFEILELESQIEKNKIILN-SLQD 117
+D V P ++ VCP T +Q +IK + L S K+ + LN LQ
Sbjct: 96 LQDMLVRLPNYPDEDVPVCPDKTGNQ--VIK-----QVGALPTFSFTPKHHVELNQKLQI 148
Query: 118 LDFVLKRFDAVEQIEDTLTGLKVIDFDGKCFRLSMQTYIPTLEESSFQHKIEDVIEPSEV 177
LDF L + + +G G C ++ TY L +H + + P V
Sbjct: 149 LDFKLP-------AKTSGSGWPAYKNQGVCLEWALLTY---LLNKQREHGFQLWLPPLLV 198
Query: 178 NHELLI 183
HE+L
Sbjct: 199 KHEILF 204
>sp|P48100|CHLN_CYAPA Light-independent protochlorophyllide reductase subunit N
OS=Cyanophora paradoxa GN=chlN PE=3 SV=1
Length = 460
Score = 32.0 bits (71), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 106 EKNKIILNSLQDLDFVLKRFDAVEQIEDTLTGLKVIDFDGKCFRLSMQTYIPTLEESSFQ 165
E+ K + +SL++ L + +V + D L L + F +C + + IP L + +
Sbjct: 300 EREKAVWDSLENY-LPLVKGKSVFFMGDNLLELSIARFLIRCGMIVPEIGIPYLHKRYQE 358
Query: 166 HKI---EDVIEPSEVNHELLIEVIDGTMEIKNVEMFPNDVHISDLVDA 210
+I ED +V L+IE D E+K +E + D+ I+ + +A
Sbjct: 359 AEIKLLEDTCRKMQVPTPLIIEKPDNYEELKRIEQYRPDLVITGMANA 406
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,786,428
Number of Sequences: 539616
Number of extensions: 4902041
Number of successful extensions: 19018
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 197
Number of HSP's that attempted gapping in prelim test: 18767
Number of HSP's gapped (non-prelim): 464
length of query: 359
length of database: 191,569,459
effective HSP length: 119
effective length of query: 240
effective length of database: 127,355,155
effective search space: 30565237200
effective search space used: 30565237200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)