Query 043117
Match_columns 359
No_of_seqs 20 out of 22
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 13:02:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043117.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043117hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15070 GOLGA2L5: Putative go 41.7 1.2E+02 0.0026 33.1 8.5 47 2-52 16-62 (617)
2 PF08317 Spc7: Spc7 kinetochor 36.6 1.1E+02 0.0025 30.0 6.8 22 132-153 288-309 (325)
3 PF12475 Amdo_NSP: Amdovirus n 35.9 21 0.00045 27.4 1.2 13 226-238 11-23 (48)
4 smart00338 BRLZ basic region l 32.5 43 0.00093 25.3 2.5 29 1-29 26-54 (65)
5 PF10367 Vps39_2: Vacuolar sor 29.7 2.8E+02 0.006 21.8 7.2 20 195-214 17-36 (109)
6 COG3627 PhnJ Uncharacterized e 27.5 61 0.0013 31.9 3.2 64 244-322 23-98 (291)
7 PF05377 FlaC_arch: Flagella a 24.5 83 0.0018 24.6 2.8 28 4-31 10-37 (55)
8 PF09496 CENP-O: Cenp-O kineto 24.1 2E+02 0.0043 23.7 5.2 56 190-252 33-88 (90)
9 PF00170 bZIP_1: bZIP transcri 23.7 73 0.0016 24.0 2.4 30 1-30 26-55 (64)
10 PF07716 bZIP_2: Basic region 22.6 99 0.0022 22.8 2.9 27 2-28 26-52 (54)
11 PF12317 IFT46_B_C: Intraflage 22.3 36 0.00078 32.9 0.6 13 274-286 48-60 (214)
12 PF05700 BCAS2: Breast carcino 21.2 2E+02 0.0043 26.9 5.2 48 2-49 137-184 (221)
No 1
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=41.69 E-value=1.2e+02 Score=33.09 Aligned_cols=47 Identities=30% Similarity=0.458 Sum_probs=40.3
Q ss_pred hhHHHHHHHhHHHhhhhchhHHHHHhhhhcccchhhhhcchHHHhhhhhhh
Q 043117 2 YLEHLKEELKTVEAESSKISNEIETLTRTQVEDSNRLESDLEELNCALDLI 52 (359)
Q Consensus 2 yle~l~~e~~~~e~e~~kvs~eI~~l~~t~~~d~~~l~~~le~L~~sl~~i 52 (359)
|.+||++|........+++|.|+..|.+--..++.+ +.+|+.+|..+
T Consensus 16 ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~----V~eLE~sL~eL 62 (617)
T PF15070_consen 16 YAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISR----VQELERSLSEL 62 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 899999999999999999999999999888877765 56677776554
No 2
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=36.58 E-value=1.1e+02 Score=30.01 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=17.6
Q ss_pred HHHhcCceEEEecCCeeEEEEe
Q 043117 132 EDTLTGLKVIDFDGKCFRLSMQ 153 (359)
Q Consensus 132 e~~LsGlkVL~fd~ncLrL~L~ 153 (359)
...++|++++.+.|+-|+|...
T Consensus 288 Le~~~gw~~~~~~~~~l~~~~~ 309 (325)
T PF08317_consen 288 LEKLTGWKIVSISGSTLEFRYK 309 (325)
T ss_pred HHHHHCcEEEEEeCCeEEEEEc
Confidence 3456899999999998887654
No 3
>PF12475 Amdo_NSP: Amdovirus non-structural protein ; InterPro: IPR020960 This domain family is found in viruses, and is approximately 50 amino acids in length. This family contains proteins of each of the three types of Amdovirus non-structural protein [].
Probab=35.93 E-value=21 Score=27.37 Aligned_cols=13 Identities=31% Similarity=0.889 Sum_probs=11.0
Q ss_pred ccchHHHHHHHHH
Q 043117 226 TSSSLQWFIRNVQ 238 (359)
Q Consensus 226 s~ssL~WlIr~vQ 238 (359)
..++|||||+++-
T Consensus 11 ~t~sL~w~~k~~n 23 (48)
T PF12475_consen 11 VTKSLGWFLKTTN 23 (48)
T ss_pred cccchHHHHHHhh
Confidence 5789999999864
No 4
>smart00338 BRLZ basic region leucin zipper.
Probab=32.47 E-value=43 Score=25.29 Aligned_cols=29 Identities=38% Similarity=0.629 Sum_probs=25.4
Q ss_pred ChhHHHHHHHhHHHhhhhchhHHHHHhhh
Q 043117 1 AYLEHLKEELKTVEAESSKISNEIETLTR 29 (359)
Q Consensus 1 ayle~l~~e~~~~e~e~~kvs~eI~~l~~ 29 (359)
+|+..|..+++..+.+|..+..++..|..
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~ 54 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRR 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999887654
No 5
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=29.74 E-value=2.8e+02 Score=21.77 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=16.4
Q ss_pred eeeccCcccHHHHHHHHHhh
Q 043117 195 VEMFPNDVHISDLVDAAKSF 214 (359)
Q Consensus 195 vqlfP~Di~i~DIVd~AKs~ 214 (359)
.+++|+|+++.+|-+....+
T Consensus 17 L~~LP~~~~l~~l~~fl~~~ 36 (109)
T PF10367_consen 17 LKLLPDDWPLSDLSDFLCKS 36 (109)
T ss_pred HHhCcCCCCHHHHHHHHHHH
Confidence 57899999999998766555
No 6
>COG3627 PhnJ Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=27.49 E-value=61 Score=31.94 Aligned_cols=64 Identities=23% Similarity=0.404 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhhccCceeEeecCCceEEEeecCceeeEEeccCCCCCCC-----------CCceEeeeccCCccccCcch
Q 043117 244 STLRRFVVKTANKSRHLFEYFEGDEMIVAHLVGGVDAFIKPSQGWPLSN-----------SPLKLISLKSSDHHSKGISL 312 (359)
Q Consensus 244 ~tLRr~lv~~An~sR~s~EY~dkdetIvAhL~ggidA~Ikvs~gWP~~~-----------~~LkLiSlk~S~~~~~~~sl 312 (359)
..+||++++..+-++|.+-+-.++ |-+|+||-..| ..||+|.- |.++--.-.|.
T Consensus 23 rmiRRalLKavaIPGyQvPF~~RE--------------MPm~yGWGTGGiQvTA~viG~~DvLKVIDQ-GADDTTNAVsI 87 (291)
T COG3627 23 RMIRRAILKAVAIPGYQVPFGGRE--------------MPMPYGWGTGGIQVTASVIGPDDVLKVIDQ-GADDTTNAVSI 87 (291)
T ss_pred HHHHHHHHHhhccCccccCcCCcc--------------ccCccccccCceEEEEEeecCcceeeeecc-CCccccchhHH
Confidence 356999999999999999876664 56788887765 45566652 33332222222
Q ss_pred -hhHHhHHHhh
Q 043117 313 -SFFCRVEEAA 322 (359)
Q Consensus 313 -s~lck~~elA 322 (359)
.|+.||-.+|
T Consensus 88 RrFFq~va~va 98 (291)
T COG3627 88 RRFFQRVAGVA 98 (291)
T ss_pred HHHHHHhccee
Confidence 3566655554
No 7
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=24.54 E-value=83 Score=24.60 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=23.4
Q ss_pred HHHHHHHhHHHhhhhchhHHHHHhhhhc
Q 043117 4 EHLKEELKTVEAESSKISNEIETLTRTQ 31 (359)
Q Consensus 4 e~l~~e~~~~e~e~~kvs~eI~~l~~t~ 31 (359)
.-+.-.+++++.||..++++|+.+.+|.
T Consensus 10 ~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 10 PRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678899999999999999998876
No 8
>PF09496 CENP-O: Cenp-O kinetochore centromere component; InterPro: IPR018464 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) The CENP-O class proteins form a stable complex and are required for proper kinetochore function. They are involved in the prevention of premature sister chromatid separation during recovery from spindle damage []. CENP-O mediates the attachment of the centromere to the mitotic spindle by forming essential interactions between the microtubule-associated outer kinetochore proteins and the centromere-associated inner kinetochore proteins. It has been shown to be involved in chromosome segregation via regulation of the spindle in both yeast [] and human [].; GO: 0007059 chromosome segregation, 0051301 cell division, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3ZXU_C.
Probab=24.14 E-value=2e+02 Score=23.72 Aligned_cols=56 Identities=14% Similarity=0.205 Sum_probs=36.9
Q ss_pred eeeeeeeeccCcccHHHHHHHHHhhhhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 043117 190 MEIKNVEMFPNDVHISDLVDAAKSFRQSGTQLDSLETSSSLQWFIRNVQDRIILSTLRRFVVK 252 (359)
Q Consensus 190 meik~vqlfP~Di~i~DIVd~AKs~r~~~l~~~~l~s~ssL~WlIr~vQ~RIia~tLRr~lv~ 252 (359)
++|-+=+| |.-||++.|...--..- ........|.-|++.++..+.+...|+..+.
T Consensus 33 ~~V~rHTI-P~~IPl~~l~~~~l~~~------~~~~~~~dl~~F~~~l~~~L~~~~~R~~~v~ 88 (90)
T PF09496_consen 33 WRVHRHTI-PPFIPLEELAAKYLPGP------GQITNKQDLYRFARELRRELVAYHNRRDQVD 88 (90)
T ss_dssp EEEEEE----TTS-HHHHHHHHHTT--------T---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCC-CCcCcHHHHHHHHcccc------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555543 99999999985543330 0011355788899999999999999998875
No 9
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=23.67 E-value=73 Score=24.02 Aligned_cols=30 Identities=30% Similarity=0.668 Sum_probs=25.3
Q ss_pred ChhHHHHHHHhHHHhhhhchhHHHHHhhhh
Q 043117 1 AYLEHLKEELKTVEAESSKISNEIETLTRT 30 (359)
Q Consensus 1 ayle~l~~e~~~~e~e~~kvs~eI~~l~~t 30 (359)
+|++.|...+...+.+|..+..++..|...
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~ 55 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKE 55 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999888877543
No 10
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=22.57 E-value=99 Score=22.79 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=24.1
Q ss_pred hhHHHHHHHhHHHhhhhchhHHHHHhh
Q 043117 2 YLEHLKEELKTVEAESSKISNEIETLT 28 (359)
Q Consensus 2 yle~l~~e~~~~e~e~~kvs~eI~~l~ 28 (359)
|++.|..++..++.+|..+..+|..|-
T Consensus 26 ~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 26 REEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678899999999999999999998874
No 11
>PF12317 IFT46_B_C: Intraflagellar transport complex B protein 46 C terminal; InterPro: IPR022088 This entry represents proteins is found in eukaryotes. Proteins are typically between 298 and 416 amino acids in length. It is thought to be a flagellar protein of complex B and like all IFT proteins, it is required for transport of IFT particles into the flagella [].
Probab=22.28 E-value=36 Score=32.86 Aligned_cols=13 Identities=54% Similarity=0.856 Sum_probs=11.1
Q ss_pred ecCceeeEEeccC
Q 043117 274 LVGGVDAFIKPSQ 286 (359)
Q Consensus 274 L~ggidA~Ikvs~ 286 (359)
-+|.||||||||-
T Consensus 48 AVGdiDaFiKVpR 60 (214)
T PF12317_consen 48 AVGDIDAFIKVPR 60 (214)
T ss_pred cccCcccceeccC
Confidence 3799999999963
No 12
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=21.18 E-value=2e+02 Score=26.94 Aligned_cols=48 Identities=27% Similarity=0.331 Sum_probs=35.6
Q ss_pred hhHHHHHHHhHHHhhhhchhHHHHHhhhhcccchhhhhcchHHHhhhh
Q 043117 2 YLEHLKEELKTVEAESSKISNEIETLTRTQVEDSNRLESDLEELNCAL 49 (359)
Q Consensus 2 yle~l~~e~~~~e~e~~kvs~eI~~l~~t~~~d~~~l~~~le~L~~sl 49 (359)
|.++|...+..++.+-+++-.+|+.+++.....=...-..|..|+..-
T Consensus 137 ~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W 184 (221)
T PF05700_consen 137 HNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRW 184 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 566777778888888888888888888877776666666666666554
Done!