Query 043117
Match_columns 359
No_of_seqs 20 out of 22
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 22:59:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043117.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043117hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 58.3 6 0.00021 29.0 2.5 31 1-31 22-52 (55)
2 1fmh_A General control protein 34.9 31 0.0011 23.3 2.8 26 3-28 3-28 (33)
3 1l8d_A DNA double-strand break 30.4 90 0.0031 24.4 5.4 44 7-54 2-45 (112)
4 3s4r_A Vimentin; alpha-helix, 26.3 39 0.0013 26.9 2.6 44 10-53 25-69 (93)
5 1s29_A LA protein; winged heli 24.3 48 0.0017 26.4 2.8 46 112-157 47-92 (92)
6 1jnm_A Proto-oncogene C-JUN; B 21.2 71 0.0024 23.3 3.0 29 2-30 23-51 (62)
7 1nkp_B MAX protein, MYC proto- 21.0 65 0.0022 24.5 2.9 26 2-27 48-73 (83)
8 2dgc_A Protein (GCN4); basic d 20.6 58 0.002 24.3 2.4 29 1-29 30-58 (63)
9 4dzo_A Mitotic spindle assembl 20.1 2.9E+02 0.01 23.0 6.9 52 97-151 5-57 (123)
10 2wt7_A Proto-oncogene protein 19.1 83 0.0028 23.1 3.0 28 2-29 24-51 (63)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=58.28 E-value=6 Score=28.96 Aligned_cols=31 Identities=16% Similarity=0.402 Sum_probs=28.0
Q ss_pred ChhHHHHHHHhHHHhhhhchhHHHHHhhhhc
Q 043117 1 AYLEHLKEELKTVEAESSKISNEIETLTRTQ 31 (359)
Q Consensus 1 ayle~l~~e~~~~e~e~~kvs~eI~~l~~t~ 31 (359)
+|++.|..++..++.||..+..|++.|.+.+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5999999999999999999999999887643
No 2
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=34.87 E-value=31 Score=23.28 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=21.7
Q ss_pred hHHHHHHHhHHHhhhhchhHHHHHhh
Q 043117 3 LEHLKEELKTVEAESSKISNEIETLT 28 (359)
Q Consensus 3 le~l~~e~~~~e~e~~kvs~eI~~l~ 28 (359)
...|.||+..+|+||-++-.|...|.
T Consensus 3 vaqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45799999999999999988876554
No 3
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=30.38 E-value=90 Score=24.39 Aligned_cols=44 Identities=20% Similarity=0.391 Sum_probs=28.4
Q ss_pred HHHHhHHHhhhhchhHHHHHhhhhcccchhhhhcchHHHhhhhhhhhh
Q 043117 7 KEELKTVEAESSKISNEIETLTRTQVEDSNRLESDLEELNCALDLIAS 54 (359)
Q Consensus 7 ~~e~~~~e~e~~kvs~eI~~l~~t~~~d~~~l~~~le~L~~sl~~i~s 54 (359)
++.+..++.+-..+..+|..|.. .-..++..++.++-.+..+..
T Consensus 2 ~~~~~~~~~~~~~~~~~l~~L~~----~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 2 KKLLEELETKKTTIEEERNEITQ----RIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhc
Confidence 34555555555666666666632 445677888888888877644
No 4
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=26.34 E-value=39 Score=26.92 Aligned_cols=44 Identities=18% Similarity=0.299 Sum_probs=24.0
Q ss_pred HhHHHhhhhchhHHHHHhhhhcc-cchhhhhcchHHHhhhhhhhh
Q 043117 10 LKTVEAESSKISNEIETLTRTQV-EDSNRLESDLEELNCALDLIA 53 (359)
Q Consensus 10 ~~~~e~e~~kvs~eI~~l~~t~~-~d~~~l~~~le~L~~sl~~i~ 53 (359)
|-..|++|+.+..+|+.+..... .+-...++.|+.|...++-+.
T Consensus 25 VR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~ 69 (93)
T 3s4r_A 25 VRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLT 69 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777776654321 122234555666665555543
No 5
>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA binding protein; 1.60A {Trypanosoma brucei} SCOP: a.4.5.46
Probab=24.30 E-value=48 Score=26.45 Aligned_cols=46 Identities=11% Similarity=0.164 Sum_probs=32.5
Q ss_pred HHhhhhhHHHhhhhHHHHHHHHHhcCceEEEecCCeeEEEEeeccc
Q 043117 112 LNSLQDLDFVLKRFDAVEQIEDTLTGLKVIDFDGKCFRLSMQTYIP 157 (359)
Q Consensus 112 lk~le~l~~~~kr~d~~~q~e~~LsGlkVL~fd~ncLrL~L~T~iP 157 (359)
|+.+..|....+--.....|-++|..-.+|++++++-+++=++++|
T Consensus 47 l~~i~sF~r~k~lt~d~~~i~~al~~S~~lev~edg~~VRR~~PlP 92 (92)
T 1s29_A 47 LETLLTFKRVNSVTTDVKEVVEAIRPSEKLVLSEDGLMVRRRDPLP 92 (92)
T ss_dssp HHHHTTSHHHHTTCSCHHHHHHHHTTCSSEEECTTSSEEEESSCCC
T ss_pred hHHHhCChhHHHHcCCHHHHHHHHhhCCeEEEeCCCCEEeCCCCCC
Confidence 3444444333333334677888998889999999998998888887
No 6
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=21.23 E-value=71 Score=23.30 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=25.3
Q ss_pred hhHHHHHHHhHHHhhhhchhHHHHHhhhh
Q 043117 2 YLEHLKEELKTVEAESSKISNEIETLTRT 30 (359)
Q Consensus 2 yle~l~~e~~~~e~e~~kvs~eI~~l~~t 30 (359)
|++.|..++...+.+|..+..||..|.+.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999887654
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=21.05 E-value=65 Score=24.46 Aligned_cols=26 Identities=12% Similarity=0.303 Sum_probs=19.9
Q ss_pred hhHHHHHHHhHHHhhhhchhHHHHHh
Q 043117 2 YLEHLKEELKTVEAESSKISNEIETL 27 (359)
Q Consensus 2 yle~l~~e~~~~e~e~~kvs~eI~~l 27 (359)
|+.+|.+++...+.|...+..|+..|
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L 73 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALL 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999988888887777666666554
No 8
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=20.62 E-value=58 Score=24.30 Aligned_cols=29 Identities=14% Similarity=0.417 Sum_probs=25.0
Q ss_pred ChhHHHHHHHhHHHhhhhchhHHHHHhhh
Q 043117 1 AYLEHLKEELKTVEAESSKISNEIETLTR 29 (359)
Q Consensus 1 ayle~l~~e~~~~e~e~~kvs~eI~~l~~ 29 (359)
+|++-|..++...+.+|..+..||+.|-+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999988754
No 9
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=20.11 E-value=2.9e+02 Score=22.96 Aligned_cols=52 Identities=27% Similarity=0.317 Sum_probs=33.5
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhHHHhhh-hHHHHHHHHHhcCceEEEecCCeeEEE
Q 043117 97 EILELESQIEKNKIILNSLQDLDFVLKR-FDAVEQIEDTLTGLKVIDFDGKCFRLS 151 (359)
Q Consensus 97 ei~eLe~Qiek~~~~lk~le~l~~~~kr-~d~~~q~e~~LsGlkVL~fd~ncLrL~ 151 (359)
|+-+|+.||+..+ |.+++|..+++. .-+.-+.=..|.|-||=-..+|.+||.
T Consensus 5 e~~~l~~qi~~~e---kr~~RLKevF~~ks~eFReav~~LlGykId~~~~~~~rl~ 57 (123)
T 4dzo_A 5 EVAELKKQVESAE---LKNQRLKEVFQTKIQEFRKACYTLTGYQIDITTENQYRLT 57 (123)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCeEEEEccCCeEEEE
Confidence 5678889998888 666666554432 222233345678999877777755553
No 10
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=19.14 E-value=83 Score=23.11 Aligned_cols=28 Identities=29% Similarity=0.442 Sum_probs=24.0
Q ss_pred hhHHHHHHHhHHHhhhhchhHHHHHhhh
Q 043117 2 YLEHLKEELKTVEAESSKISNEIETLTR 29 (359)
Q Consensus 2 yle~l~~e~~~~e~e~~kvs~eI~~l~~ 29 (359)
|+..|..++...+.+|..+..||..|..
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999976544
Done!