Query 043117
Match_columns 359
No_of_seqs 20 out of 22
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 22:59:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043117.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043117hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1s29a_ a.4.5.46 (A:) Lupus La 38.7 9.2 0.00067 28.9 2.8 47 111-157 46-92 (92)
2 d2azeb1 e.63.1.2 (B:201-301) T 26.7 27 0.002 26.5 3.8 66 227-302 17-91 (101)
3 d1twfc1 d.74.3.1 (C:3-41,C:173 18.0 29 0.0021 27.9 2.4 48 240-292 25-72 (135)
4 d1utga_ a.101.1.1 (A:) Uterogl 17.8 45 0.0033 24.2 3.1 26 316-341 39-64 (70)
5 d1nkpa_ a.38.1.1 (A:) Myc prot 14.9 54 0.0039 23.3 3.0 27 1-27 52-78 (88)
6 d1eara1 b.107.1.1 (A:1-74) Ure 14.3 64 0.0047 22.5 3.2 32 261-292 25-57 (74)
7 d1uklc_ a.38.1.1 (C:) SREBP-2 14.2 53 0.0039 22.1 2.6 23 2-24 34-56 (61)
8 d1am9a_ a.38.1.1 (A:) SREBP-1a 14.1 57 0.0041 22.9 2.9 26 2-27 51-76 (80)
9 d1bh9b_ a.22.1.3 (B:) TAF(II)2 13.9 65 0.0047 24.1 3.3 23 202-224 48-70 (89)
10 d2ffga1 d.317.1.1 (A:2-79) Hyp 12.6 1.7E+02 0.012 21.4 5.2 45 118-162 3-47 (78)
No 1
>d1s29a_ a.4.5.46 (A:) Lupus La autoantigen N-terminal domain {Trypanosoma brucei [TaxId: 5691]}
Probab=38.73 E-value=9.2 Score=28.90 Aligned_cols=47 Identities=11% Similarity=0.148 Sum_probs=34.8
Q ss_pred HHHhhhhhHHHhhhhHHHHHHHHHhcCceEEEecCCeeEEEEeeccc
Q 043117 111 ILNSLQDLDFVLKRFDAVEQIEDTLTGLKVIDFDGKCFRLSMQTYIP 157 (359)
Q Consensus 111 ~lk~le~l~~~~kr~d~~~q~e~~LsGlkVL~fd~ncLrL~L~T~iP 157 (359)
-+..+-.|....+-...+..+-.+|.+-++|+++++..+++=++++|
T Consensus 46 ~i~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~VRRk~plP 92 (92)
T d1s29a_ 46 SLETLLTFKRVNSVTTDVKEVVEAIRPSEKLVLSEDGLMVRRRDPLP 92 (92)
T ss_dssp EHHHHTTSHHHHTTCSCHHHHHHHHTTCSSEEECTTSSEEEESSCCC
T ss_pred EhHHHhcCcCHHHhcCCHHHHHHHHhhCCeEEEeCCCCEEeeCCCCC
Confidence 34455555443333345678889999999999999998888889888
No 2
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.70 E-value=27 Score=26.52 Aligned_cols=66 Identities=11% Similarity=0.215 Sum_probs=41.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhhccCceeEee--------cCCceEEE-eecCceeeEEeccCCCCCCCCCceE
Q 043117 227 SSSLQWFIRNVQDRIILSTLRRFVVKTANKSRHLFEYF--------EGDEMIVA-HLVGGVDAFIKPSQGWPLSNSPLKL 297 (359)
Q Consensus 227 ~ssL~WlIr~vQ~RIia~tLRr~lv~~An~sR~s~EY~--------dkdetIvA-hL~ggidA~Ikvs~gWP~~~~~LkL 297 (359)
-..|..+|+.+|.++ +.+..+..+.||++.=. -++.|++| --|.| +.++||. |-.++.+.|
T Consensus 17 E~~LD~li~~~~~~L------~~lted~~n~k~ayVT~~Di~~i~~f~~~tviaIkAP~g--T~LeVPd--p~~~yqi~l 86 (101)
T d2azeb1 17 EQQLDHLMNICTTQL------RLLSEDTDSQRLAYVTCQDLRSIADPAEQMVMVIKAPPE--TQLQAVD--SSENFQISL 86 (101)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHCHHHHHHCEEEHHHHHTTSCTTTEEEEEEECCTT--CEEEEEE--CSSCEEEEE
T ss_pred HHHHHHHHHHHHHHH------HHhhhchhhccCCccCHHHHhhCCCcccceEEEEECCCC--CEEeecC--CCccEEEEE
Confidence 456888999988887 45777888888885432 34566555 33333 4556653 444677777
Q ss_pred eeecc
Q 043117 298 ISLKS 302 (359)
Q Consensus 298 iSlk~ 302 (359)
.|-+|
T Consensus 87 kS~~G 91 (101)
T d2azeb1 87 KSKQG 91 (101)
T ss_dssp ECSSS
T ss_pred ecCCC
Confidence 66554
No 3
>d1twfc1 d.74.3.1 (C:3-41,C:173-268) RPB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.00 E-value=29 Score=27.86 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhhhccCceeEeecCCceEEEeecCceeeEEeccCCCCCCC
Q 043117 240 RIILSTLRRFVVKTANKSRHLFEYFEGDEMIVAHLVGGVDAFIKPSQGWPLSN 292 (359)
Q Consensus 240 RIia~tLRr~lv~~An~sR~s~EY~dkdetIvAhL~ggidA~Ikvs~gWP~~~ 292 (359)
.-+||+|||.++++.-.. -.|+|.+-.++ + |..= --.-..+..||.+.
T Consensus 25 ~s~ANalRRi~iaeV~t~-v~feyDp~N~l-r-Htdy--w~e~~~~~ewP~s~ 72 (135)
T d1twfc1 25 LAMANSLRRVMIAEIAAA-IEFEYDPWNKL-K-HTDY--WYEQDSAKEWPQSK 72 (135)
T ss_dssp HHHHHHHHHHHHHCCEEE-EEEEECSSTTS-C-CSCC--CCSSCHHHHSCCCG
T ss_pred HHHHHHHHHHHHHhhhhh-eeeeecccccc-c-ceee--cccCCccccCCccc
Confidence 458999999999987654 56666544443 1 3210 00002356799854
No 4
>d1utga_ a.101.1.1 (A:) Uteroglobin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=17.77 E-value=45 Score=24.21 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=21.4
Q ss_pred HhHHHhhccccHHHHhhhhhHHHHHH
Q 043117 316 CRVEEAANSLDVHIRQNLSSFVDGVE 341 (359)
Q Consensus 316 ck~~elANsld~~~R~~l~~FvdAVE 341 (359)
-+.|.+..+|+...|.|+.+|++-|.
T Consensus 39 ~~lK~cvDtLt~edK~~i~~liekI~ 64 (70)
T d1utga_ 39 MQMKKVLDSLPQTTRENIMKLTEKIV 64 (70)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 46677788999999999999986553
No 5
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.95 E-value=54 Score=23.25 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=18.8
Q ss_pred ChhHHHHHHHhHHHhhhhchhHHHHHh
Q 043117 1 AYLEHLKEELKTVEAESSKISNEIETL 27 (359)
Q Consensus 1 ayle~l~~e~~~~e~e~~kvs~eI~~l 27 (359)
.|+.+|++++...+.+...+..+.+.|
T Consensus 52 ~yI~~L~~~~~~l~~~~~~l~~~~~~L 78 (88)
T d1nkpa_ 52 AYILSVQAEEQKLISEEDLLRKRREQL 78 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388999988888777666655555443
No 6
>d1eara1 b.107.1.1 (A:1-74) Urease metallochaperone UreE, N-terminal domain {Bacillus pasteurii [TaxId: 1474]}
Probab=14.26 E-value=64 Score=22.54 Aligned_cols=32 Identities=19% Similarity=0.191 Sum_probs=26.6
Q ss_pred eEeecCC-ceEEEeecCceeeEEeccCCCCCCC
Q 043117 261 FEYFEGD-EMIVAHLVGGVDAFIKPSQGWPLSN 292 (359)
Q Consensus 261 ~EY~dkd-etIvAhL~ggidA~Ikvs~gWP~~~ 292 (359)
++|.+.. ...+.+...|.+..|.+|.++++..
T Consensus 25 L~~~dr~krr~r~~t~~G~ei~i~L~r~~~L~~ 57 (74)
T d1eara1 25 VEWEDLNKRILRKETENGTDIAIKLENSGTLRY 57 (74)
T ss_dssp ECGGGGGCSEEEEECTTCCEEEEECSSCCCCCT
T ss_pred ECHHHhhceEEEEECCCCCEEEEECCCCcEecC
Confidence 4455554 7899999999999999999999864
No 7
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.17 E-value=53 Score=22.11 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=19.3
Q ss_pred hhHHHHHHHhHHHhhhhchhHHH
Q 043117 2 YLEHLKEELKTVEAESSKISNEI 24 (359)
Q Consensus 2 yle~l~~e~~~~e~e~~kvs~eI 24 (359)
|+..|++++...++|+..+..+.
T Consensus 34 YI~~Lq~~~~~L~~e~~~L~~~~ 56 (61)
T d1uklc_ 34 YIKYLQQVNHKLRQENMVLKLAN 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999998888776554
No 8
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.07 E-value=57 Score=22.90 Aligned_cols=26 Identities=12% Similarity=0.328 Sum_probs=22.2
Q ss_pred hhHHHHHHHhHHHhhhhchhHHHHHh
Q 043117 2 YLEHLKEELKTVEAESSKISNEIETL 27 (359)
Q Consensus 2 yle~l~~e~~~~e~e~~kvs~eI~~l 27 (359)
|+.+|.++++..+.|+..+-.+++..
T Consensus 51 yI~~L~~~~~~L~~e~~~lk~~~~~~ 76 (80)
T d1am9a_ 51 YIRFLQHSNQKLKQENLSLRTAVHKS 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999988887777654
No 9
>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.92 E-value=65 Score=24.08 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=19.2
Q ss_pred ccHHHHHHHHHhhhhhccccccc
Q 043117 202 VHISDLVDAAKSFRQSGTQLDSL 224 (359)
Q Consensus 202 i~i~DIVd~AKs~r~~~l~~~~l 224 (359)
|.||+||+.|+...+..-+..+|
T Consensus 48 vFvGEiVE~A~~V~~~~~e~~PL 70 (89)
T d1bh9b_ 48 VFVGEVVEEALDVCEKWGEMPPL 70 (89)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHHHHHHHHHHHhccCCCC
Confidence 67999999999998877666666
No 10
>d2ffga1 d.317.1.1 (A:2-79) Hypothetical protein YkuJ {Bacillus subtilis [TaxId: 1423]}
Probab=12.59 E-value=1.7e+02 Score=21.43 Aligned_cols=45 Identities=9% Similarity=0.112 Sum_probs=36.5
Q ss_pred hHHHhhhhHHHHHHHHHhcCceEEEecCCeeEEEEeecccCcccc
Q 043117 118 LDFVLKRFDAVEQIEDTLTGLKVIDFDGKCFRLSMQTYIPTLEES 162 (359)
Q Consensus 118 l~~~~kr~d~~~q~e~~LsGlkVL~fd~ncLrL~L~T~iPt~e~v 162 (359)
|.-..+|-++|..--+...++.+=.|+-|++.+=-.||.|.++.+
T Consensus 3 L~~II~RL~aM~e~~~~~~e~q~R~FE~~G~~~c~V~y~~~t~tf 47 (78)
T d2ffga1 3 LMGIITRLQSLQETAEAANEPMQRYFEVNGEKICSVKYFEKNQTF 47 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred HHHHHHHHHHHHhhhccCCcceeeeehhCCeEEEEEEEecCCCeE
Confidence 444567778887666777889999999999999999999996654
Done!