Your job contains 1 sequence.
>043119
MQVYMACILHGHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKS
EESFLSALKRSDGTTEAPTVKLVKSSIFSYEQAWHRLIYLRVTGMDDGLSIKERICYLNS
MMDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAH
EALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRL
NAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNK
IFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVRE
GFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCIFEEKL
DDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSH
ICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTVDT
FIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHM
TAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPK
VLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLH
CALLAGVPAEVIKRAAYVLEAAQNNKHVERWSHENISAQDQQYKNAVEKMLAFDVLKGDL
RLFFQDLLPSKL
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 043119
(792 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2092404 - symbol:MSH5 "AT3G20475" species:3702... 3194 0. 1
UNIPROTKB|Q6L4V0 - symbol:P0010D04.9 "Putative uncharacte... 2840 8.3e-296 1
DICTYBASE|DDB_G0284747 - symbol:msh5 "mutS homolog" speci... 876 6.1e-95 2
MGI|MGI:1329021 - symbol:Msh5 "mutS homolog 5 (E. coli)" ... 935 6.1e-94 1
RGD|1303008 - symbol:Msh5 "mutS homolog 5 (E. coli)" spec... 924 9.0e-93 1
UNIPROTKB|F1PBG8 - symbol:MSH5 "Uncharacterized protein" ... 789 2.2e-82 2
UNIPROTKB|E1B8D2 - symbol:MSH5 "Uncharacterized protein" ... 811 8.5e-81 1
UNIPROTKB|O43196 - symbol:MSH5 "MutS protein homolog 5" s... 803 6.0e-80 1
UNIPROTKB|J9NUN0 - symbol:MSH5 "Uncharacterized protein" ... 789 1.8e-78 1
UNIPROTKB|Q5SSQ8 - symbol:MSH5 "MutS protein homolog 5" s... 779 2.1e-77 1
UNIPROTKB|A3KGM5 - symbol:MSH5 "MutS protein homolog 5" s... 751 1.9e-74 1
UNIPROTKB|A3KGM4 - symbol:MSH5 "MutS protein homolog 5" s... 722 2.3e-71 1
UNIPROTKB|A3KGM6 - symbol:MSH5 "MutS protein homolog 5" s... 713 2.1e-70 1
UNIPROTKB|F1N8B7 - symbol:F1N8B7 "Uncharacterized protein... 671 5.8e-66 1
UNIPROTKB|B4DZX3 - symbol:MSH5 "cDNA FLJ54211, highly sim... 610 1.7e-59 1
UNIPROTKB|A2ABF0 - symbol:MSH5 "cDNA FLJ39914 fis, clone ... 599 2.5e-58 1
UNIPROTKB|A2BEX4 - symbol:MSH5-SAPCD1 "MutS protein homol... 599 2.5e-58 1
UNIPROTKB|A2BEX2 - symbol:MSH5 "MutS protein homolog 5" s... 590 2.2e-57 1
UNIPROTKB|Q7SCW0 - symbol:NCU09384 "Predicted protein" sp... 388 6.9e-55 2
UNIPROTKB|H7C2J4 - symbol:MSH5 "MutS protein homolog 5" s... 541 6.0e-52 1
TIGR_CMR|DET_1219 - symbol:DET_1219 "DNA mismatch repair ... 478 9.4e-52 2
UNIPROTKB|B0V0L9 - symbol:MSH5 "MutS protein homolog 5" s... 537 1.8e-51 1
UNIPROTKB|A2BEX3 - symbol:MSH5 "MutS protein homolog 5" s... 528 1.9e-50 1
UNIPROTKB|Q8A334 - symbol:mutS "DNA mismatch repair prote... 466 6.7e-50 2
UNIPROTKB|A3KGM9 - symbol:MSH5 "MutS protein homolog 5" s... 518 2.5e-49 1
TIGR_CMR|CHY_1397 - symbol:CHY_1397 "DNA mismatch repair ... 482 2.9e-49 2
UNIPROTKB|P61667 - symbol:mutS "DNA mismatch repair prote... 446 6.7e-49 2
TIGR_CMR|GSU_1822 - symbol:GSU_1822 "DNA mismatch repair ... 446 6.7e-49 2
UNIPROTKB|A9WFZ9 - symbol:mutS "DNA mismatch repair prote... 526 7.9e-48 1
UNIPROTKB|F1MLH1 - symbol:MSH3 "Uncharacterized protein" ... 458 1.2e-46 3
MGI|MGI:109519 - symbol:Msh3 "mutS homolog 3 (E. coli)" s... 462 1.6e-46 2
UNIPROTKB|F1P9S9 - symbol:MSH3 "Uncharacterized protein" ... 465 2.0e-46 2
UNIPROTKB|F1LQM8 - symbol:Msh3 "Protein Msh3" species:101... 457 6.2e-46 2
UNIPROTKB|P20585 - symbol:MSH3 "DNA mismatch repair prote... 461 1.3e-45 2
WB|WBGene00003421 - symbol:msh-5 species:6239 "Caenorhabd... 507 1.5e-45 2
UNIPROTKB|Q19272 - symbol:msh-5 "MutS protein homolog 5" ... 507 1.5e-45 2
UNIPROTKB|P74926 - symbol:mutS "DNA mismatch repair prote... 427 1.5e-44 2
UNIPROTKB|Q3KKQ0 - symbol:mutS "DNA mismatch repair prote... 402 1.6e-44 3
UNIPROTKB|E1C1F8 - symbol:MSH3 "Uncharacterized protein" ... 472 3.2e-44 1
TIGR_CMR|NSE_0335 - symbol:NSE_0335 "DNA mismatch repair ... 431 1.6e-42 2
UNIPROTKB|E9PGY4 - symbol:MSH5-SAPCD1 "Protein MSH5-SAPCD... 450 8.3e-42 1
TIGR_CMR|APH_0857 - symbol:APH_0857 "DNA mismatch repair ... 421 8.9e-42 2
UNIPROTKB|H0YF11 - symbol:MSH5-SAPCD1 "Protein MSH5-SAPCD... 444 3.7e-41 1
UNIPROTKB|Q9UFG2 - symbol:DKFZp434C1615 "Putative unchara... 444 3.7e-41 1
UNIPROTKB|Q8TTB4 - symbol:mutS "DNA mismatch repair prote... 467 1.2e-40 2
UNIPROTKB|Q752H0 - symbol:AFR603C "AFR603Cp" species:2848... 445 1.4e-40 2
TIGR_CMR|BA_3905 - symbol:BA_3905 "DNA mismatch repair pr... 379 4.6e-40 2
SGD|S000000688 - symbol:MSH3 "Mismatch repair protein" sp... 455 9.5e-40 1
UNIPROTKB|A6V1G8 - symbol:mutS "DNA mismatch repair prote... 405 2.0e-39 2
TIGR_CMR|SO_3431 - symbol:SO_3431 "DNA mismatch repair pr... 410 2.3e-39 3
DICTYBASE|DDB_G0275999 - symbol:msh1 "mutS homolog" speci... 360 5.7e-39 2
ASPGD|ASPL0000012704 - symbol:AN3749 species:162425 "Emer... 411 7.6e-39 2
UNIPROTKB|Q5B6T1 - symbol:msh3 "DNA mismatch repair prote... 411 7.6e-39 2
POMBASE|SPAC8F11.03 - symbol:msh3 "MutS protein homolog 3... 398 9.9e-39 2
TAIR|locus:2131829 - symbol:MSH3 "AT4G25540" species:3702... 406 1.2e-38 2
SGD|S000005450 - symbol:MSH2 "Protein that forms heterodi... 438 6.2e-38 1
TIGR_CMR|CBU_1056 - symbol:CBU_1056 "DNA mismatch repair ... 376 8.2e-38 2
CGD|CAL0000288 - symbol:orf19.3608 species:5476 "Candida ... 436 1.2e-37 1
UNIPROTKB|O66652 - symbol:mutS "DNA mismatch repair prote... 434 1.2e-37 1
CGD|CAL0005874 - symbol:orf19.496 species:5476 "Candida a... 391 1.8e-37 2
TIGR_CMR|VC_0535 - symbol:VC_0535 "DNA mismatch repair pr... 351 5.4e-37 2
UNIPROTKB|F1PM37 - symbol:MSH2 "Uncharacterized protein" ... 432 7.4e-37 3
UNIPROTKB|F1NV33 - symbol:MSH2 "Uncharacterized protein" ... 415 1.9e-36 2
UNIPROTKB|F1NFH4 - symbol:MSH2 "Uncharacterized protein" ... 415 2.0e-36 2
UNIPROTKB|Q7NLT8 - symbol:mutS "DNA mismatch repair prote... 367 2.6e-36 2
DICTYBASE|DDB_G0275809 - symbol:msh2 "mutS homolog" speci... 423 2.6e-36 1
UNIPROTKB|Q3MHE4 - symbol:MSH2 "DNA mismatch repair prote... 423 4.0e-36 3
TIGR_CMR|ECH_0824 - symbol:ECH_0824 "DNA mismatch repair ... 369 6.5e-36 2
UNIPROTKB|Q759V4 - symbol:MSH3 "DNA mismatch repair prote... 387 1.6e-35 3
SGD|S000002313 - symbol:MSH5 "Protein of the MutS family"... 412 3.9e-35 1
ZFIN|ZDB-GENE-040426-2932 - symbol:msh2 "mutS homolog 2 (... 403 4.1e-35 2
MGI|MGI:101816 - symbol:Msh2 "mutS homolog 2 (E. coli)" s... 407 5.5e-35 3
UNIPROTKB|Q7RQK0 - symbol:PY01096 "MutS homolog 2-related... 343 9.3e-35 2
UNIPROTKB|Q8F496 - symbol:mutS "DNA mismatch repair prote... 374 1.1e-34 2
CGD|CAL0001526 - symbol:MSH2 species:5476 "Candida albica... 343 1.3e-34 3
TAIR|locus:2095097 - symbol:MSH2 "AT3G18524" species:3702... 412 1.5e-34 2
UNIPROTKB|Q75D87 - symbol:AGOS_ABR137W "ABR137Wp" species... 351 2.7e-34 2
UNIPROTKB|E9PHA6 - symbol:MSH2 "DNA mismatch repair prote... 401 5.7e-34 2
UNIPROTKB|P43246 - symbol:MSH2 "DNA mismatch repair prote... 401 6.1e-34 2
UNIPROTKB|F1P6X2 - symbol:MSH4 "Uncharacterized protein" ... 398 9.6e-34 1
UNIPROTKB|E2RJA9 - symbol:MSH4 "Uncharacterized protein" ... 398 1.5e-33 1
UNIPROTKB|P49849 - symbol:mutS "DNA mismatch repair prote... 396 1.6e-33 2
UNIPROTKB|P23909 - symbol:mutS species:83333 "Escherichia... 363 2.5e-33 2
FB|FBgn0015546 - symbol:spel1 "spellchecker1" species:722... 395 3.0e-33 1
SGD|S000001162 - symbol:MSH1 "DNA-binding protein involve... 319 3.7e-33 2
POMBASE|SPAC13F5.01c - symbol:msh1 "mitochondrial MutS pr... 345 4.0e-33 2
RGD|620786 - symbol:Msh2 "mutS homolog 2 (E. coli)" speci... 399 1.3e-32 3
TIGR_CMR|SPO_0011 - symbol:SPO_0011 "DNA mismatch repair ... 337 1.8e-32 2
UNIPROTKB|F1P4E2 - symbol:MSH4 "Uncharacterized protein" ... 385 3.1e-32 1
UNIPROTKB|A4R0R0 - symbol:MSH3 "DNA mismatch repair prote... 354 3.1e-32 2
UNIPROTKB|A2ABE9 - symbol:MSH5 "MutS protein homolog 5" s... 361 3.7e-32 1
UNIPROTKB|O15457 - symbol:MSH4 "MutS protein homolog 4" s... 385 3.9e-32 1
UNIPROTKB|Q7S4J6 - symbol:NCU08135 "DNA mismatch repair p... 317 4.7e-32 2
DICTYBASE|DDB_G0268614 - symbol:msh6 "mutS homolog" speci... 386 5.4e-32 1
POMBASE|SPBC19G7.01c - symbol:msh2 "MutS protein homolog ... 263 1.1e-31 2
ASPGD|ASPL0000041666 - symbol:mshA species:162425 "Emeric... 305 2.0e-31 2
UNIPROTKB|Q5BCM2 - symbol:AN1708.2 "Protein required for ... 305 2.0e-31 2
UNIPROTKB|I3L5Z8 - symbol:MSH4 "Uncharacterized protein" ... 320 2.2e-31 2
UNIPROTKB|F1RF09 - symbol:MSH3 "Uncharacterized protein" ... 379 2.6e-31 1
UNIPROTKB|E1BK76 - symbol:MSH4 "Uncharacterized protein" ... 387 2.7e-31 2
WARNING: Descriptions of 77 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2092404 [details] [associations]
symbol:MSH5 "AT3G20475" species:3702 "Arabidopsis
thaliana" [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200
"ATP catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0000794 "condensed nuclear chromosome"
evidence=IDA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IMP] [GO:0051026 "chiasma assembly" evidence=IMP]
[GO:0006302 "double-strand break repair" evidence=RCA] [GO:0006312
"mitotic recombination" evidence=RCA] [GO:0007059 "chromosome
segregation" evidence=RCA] [GO:0007062 "sister chromatid cohesion"
evidence=RCA] [GO:0007129 "synapsis" evidence=RCA] [GO:0009691
"cytokinin biosynthetic process" evidence=RCA] [GO:0010332
"response to gamma radiation" evidence=RCA] [GO:0032204 "regulation
of telomere maintenance" evidence=RCA] [GO:0032504 "multicellular
organism reproduction" evidence=RCA] [GO:0042138 "meiotic DNA
double-strand break formation" evidence=RCA] [GO:0043247 "telomere
maintenance in response to DNA damage" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002686
GO:GO:0003684 GO:GO:0030983 GO:GO:0008094 GO:GO:0051026
EMBL:AB024036 GO:GO:0045143 GO:GO:0043073 GO:GO:0000795
SUPFAM:SSF48334 GO:GO:0032300 GO:GO:0010777 EMBL:EF471448
EMBL:AK221687 EMBL:AK230222 EMBL:BT012280 IPI:IPI00532145
RefSeq:NP_188683.3 UniGene:At.50208 ProteinModelPortal:F4JEP5
SMR:F4JEP5 EnsemblPlants:AT3G20475.1 GeneID:821593
KEGG:ath:AT3G20475 TAIR:At3g20475 KO:K08741 OMA:NDLVFFY
Uniprot:F4JEP5
Length = 807
Score = 3194 (1129.4 bits), Expect = 0., P = 0.
Identities = 615/796 (77%), Positives = 696/796 (87%)
Query: 2 QVYMACILHGHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSE 61
QVYMACI HG RVGVSYYD S+RQLHVLE WE+ SDF LI++VKYQA+P IIY STKSE
Sbjct: 12 QVYMACIQHGRRVGVSYYDCSVRQLHVLEFWEEDCSDFTLINMVKYQAKPSIIYASTKSE 71
Query: 62 ESFLSALKRSDGTTEAPTVKLVKSSIFSYEQAWHRLIYLRVTGMDDGLSIKERICYLNSM 121
ESF++AL+++DGT E VKLVKSS FSYEQAWHRL+YLRVTGMDDGL+IKERICYL+SM
Sbjct: 72 ESFVAALQQNDGTDETTMVKLVKSSTFSYEQAWHRLVYLRVTGMDDGLNIKERICYLSSM 131
Query: 122 MDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAHE 181
MD+GSEVQVR SGGLLA+LE+ERIV+TLEQ ESG+ASI IDSV+EV LNKFLKLDA AHE
Sbjct: 132 MDVGSEVQVRVSGGLLAILESERIVETLEQNESGSASIAIDSVMEVPLNKFLKLDAAAHE 191
Query: 182 ALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLN 241
ALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKC TPMGRRLLR+WF+RPILDLE L+ RLN
Sbjct: 192 ALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCATPMGRRLLRSWFMRPILDLEVLDRRLN 251
Query: 242 AISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKI 301
AISFF+ S ELMASL ETLK VKDI H+LKKFNSP+ + T++DWTAFLKSI +LLHVNKI
Sbjct: 252 AISFFISSVELMASLRETLKSVKDISHLLKKFNSPTSLCTSNDWTAFLKSISALLHVNKI 311
Query: 302 FEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREG 361
FEVG+SESLRE +R N DI+EKA CI+TEL YVYELVIG+IDV RSKE+GY TLV+EG
Sbjct: 312 FEVGVSESLREHMRRFNLDIIEKAGLCISTELDYVYELVIGVIDVTRSKERGYQTLVKEG 371
Query: 362 FCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCIFEEKLD 421
FC ELDELRQIYEELPEFL+EV+++EL PHL KE PCIVYI QIGYLMCIF EKLD
Sbjct: 372 FCAELDELRQIYEELPEFLQEVSAMELEHFPHLHKEKLPPCIVYIQQIGYLMCIFGEKLD 431
Query: 422 DTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHI 481
+T L +L FEFAFSDMDGET+R FYHT KTRELDNLLGDIYHKILDMERAI RDL+SH
Sbjct: 432 ETALNRLTEFEFAFSDMDGETQRFFYHTSKTRELDNLLGDIYHKILDMERAIIRDLLSHT 491
Query: 482 CLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTVDTF 541
LFS HLLKAVNF AELDC LSLA VAHQNNY+RP+LT+E LLDI+NGRHVLQEM VDTF
Sbjct: 492 LLFSAHLLKAVNFVAELDCILSLACVAHQNNYVRPVLTVESLLDIRNGRHVLQEMAVDTF 551
Query: 542 IPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD----- 596
IPNDT I+++GRI+IITGPNYSGKSIY+KQVALIVFLSHIGSFVPADAATVGLTD
Sbjct: 552 IPNDTEINDNGRIHIITGPNYSGKSIYVKQVALIVFLSHIGSFVPADAATVGLTDRIFCA 611
Query: 597 --SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVT 654
SK MTAEQS+FMIDLHQVGMMLRQATS+SLCLLDEFGKGTLTEDGIGLLGGTI++F T
Sbjct: 612 MGSKFMTAEQSTFMIDLHQVGMMLRQATSRSLCLLDEFGKGTLTEDGIGLLGGTISHFAT 671
Query: 655 CDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHAL 714
C PP+V+VCTHLTELLNE CLP SE++KFYTMSVLRP+ S ++E+IVFLYRL+PG L
Sbjct: 672 CAEPPRVVVCTHLTELLNESCLPVSEKIKFYTMSVLRPDTESANMEEIVFLYRLIPGQTL 731
Query: 715 LSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERWSHENISAQDQQYKNAVEKMLAFD 774
LSYGLHCALLAGVP EV+KRAA VL+A ++N +V++ S + IS+QDQ +K+AV+K D
Sbjct: 732 LSYGLHCALLAGVPEEVVKRAAIVLDAFESNNNVDKLSLDKISSQDQAFKDAVDKFAELD 791
Query: 775 VLKGDLRLFFQDLLPS 790
+ KGD+ FFQD+ S
Sbjct: 792 ISKGDIHAFFQDIFTS 807
>UNIPROTKB|Q6L4V0 [details] [associations]
symbol:P0010D04.9 "Putative uncharacterized protein
P0010D04.9" species:39947 "Oryza sativa Japonica Group" [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:AP008211 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
KO:K08741 EMBL:AC130605 RefSeq:NP_001055948.1 UniGene:Os.53982
GeneID:4339215 KEGG:osa:4339215 ProtClustDB:CLSN2695708
Uniprot:Q6L4V0
Length = 809
Score = 2840 (1004.8 bits), Expect = 8.3e-296, P = 8.3e-296
Identities = 544/796 (68%), Positives = 656/796 (82%)
Query: 2 QVYMACILHGHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSE 61
QV+MAC++ G RVG++YYDSS+ QL VLE+WED DFPLID+VKYQ++P IYTSTK++
Sbjct: 17 QVHMACVMQGRRVGIAYYDSSMHQLFVLEIWEDITEDFPLIDLVKYQSKPSTIYTSTKTD 76
Query: 62 ESFLSALKRSDGTTEAPTVKLVKSSIFSYEQAWHRLIYLRVTGMDDGLSIKERICYLNSM 121
E+ L AL+R+D EAP VKL+KSS FSYEQAWHRL+YL+V MD+GLS+KERIC+LNSM
Sbjct: 77 EALLLALQRNDCNDEAPAVKLMKSSTFSYEQAWHRLMYLKVAAMDEGLSVKERICFLNSM 136
Query: 122 MDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAHE 181
MD+GS+VQVRA+GGLLA+L+NER++DTL+Q E G ASI IDSV ++SL+KFLKLDATAHE
Sbjct: 137 MDLGSDVQVRAAGGLLAILDNERLLDTLDQMEGG-ASIAIDSVAQISLDKFLKLDATAHE 195
Query: 182 ALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLN 241
ALQIFQ DKHPS+MGIGRAKEGFSVFGM+NKCVTPMG+ LLR WFLRPI+D++ +N+RLN
Sbjct: 196 ALQIFQVDKHPSYMGIGRAKEGFSVFGMLNKCVTPMGKHLLRTWFLRPIIDIDVINNRLN 255
Query: 242 AISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKI 301
ISFFLC E++M++L TLK V+DIPH+LKKFNSPS T+SDW AFLK ICSLLH+NKI
Sbjct: 256 TISFFLCCEDVMSALRGTLKSVRDIPHMLKKFNSPSSFCTSSDWHAFLKCICSLLHINKI 315
Query: 302 FEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREG 361
FEVGISE L +L+ +N D+V KA S IT EL YV +LV+G+IDV R KEKGY TLV++G
Sbjct: 316 FEVGISEHLAIKLQHMNIDLVGKANSSITEELDYVSDLVVGVIDVQRGKEKGYDTLVKDG 375
Query: 362 FCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCIFEEKLD 421
C+ELDELR +YEELP+FLE+V++ E+ P + P IVY+HQIGYLMC F+EK+
Sbjct: 376 LCEELDELRMVYEELPDFLEQVSANEIASFPFSFECRKAPLIVYVHQIGYLMCFFDEKIS 435
Query: 422 DTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHI 481
D L L FEFAFS+ +GE +R +YHT KTRELDNLLGDIYHKILDMERAI RDLV +
Sbjct: 436 DALLIGLPDFEFAFSE-EGEERRFYYHTQKTRELDNLLGDIYHKILDMERAIIRDLVCRV 494
Query: 482 CLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTVDTF 541
C F L KAVNFAAELDC LSLA+VA QNNY+RPILT + +L+IQNGRH LQEMTVDTF
Sbjct: 495 CQFIPQLTKAVNFAAELDCILSLAIVARQNNYVRPILTEDSILEIQNGRHALQEMTVDTF 554
Query: 542 IPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD----- 596
+PNDT+I + GRINIITGPNYSGKSIYIKQVAL+VFL+HIGSFVPAD+A VGLTD
Sbjct: 555 VPNDTKIRSSGRINIITGPNYSGKSIYIKQVALVVFLAHIGSFVPADSAIVGLTDRIFCA 614
Query: 597 --SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVT 654
SK MT+EQS+FMIDLHQVG MLR ATS+SLCLLDEFGKGTLTEDGIGLLGGTI++F
Sbjct: 615 MGSKSMTSEQSTFMIDLHQVGTMLRHATSRSLCLLDEFGKGTLTEDGIGLLGGTISHFTD 674
Query: 655 CDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHAL 714
D PPKVL+ THLT++ E LP+SE +K YTMSVL P+ TD ED++FLYRLVPG AL
Sbjct: 675 YDCPPKVLLSTHLTQIFTESYLPQSEHIKCYTMSVLNPDEQ-TDNEDVIFLYRLVPGQAL 733
Query: 715 LSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERWSHENISAQDQQYKNAVEKMLAFD 774
LS+GLHCA LAGVP+EV++RA VL + + + R E ++A+DQQY++AV K+LAFD
Sbjct: 734 LSFGLHCAQLAGVPSEVVQRAVTVLGDIHSKRPIRRMVWEKLAAKDQQYQDAVTKLLAFD 793
Query: 775 VLKGDLRLFFQDLLPS 790
KGDL FFQ++ PS
Sbjct: 794 PHKGDLVNFFQEVFPS 809
>DICTYBASE|DDB_G0284747 [details] [associations]
symbol:msh5 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0007131 "reciprocal
meiotic recombination" evidence=ISS;IBA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0032300
"mismatch repair complex" evidence=IRD] [GO:0003684 "damaged DNA
binding" evidence=IRD] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 Pfam:PF00488 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0284747
GO:GO:0005524 GenomeReviews:CM000153_GR EMBL:AAFI02000071
GO:GO:0006298 GO:GO:0030983 GO:GO:0007131 GO:GO:0008094
GO:GO:0051026 GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249
SUPFAM:SSF48334 SUPFAM:SSF53150 KO:K08741 RefSeq:XP_638383.1
EnsemblProtists:DDB0231220 GeneID:8624752 KEGG:ddi:DDB_G0284747
InParanoid:Q54P75 OMA:FAAELDC ProtClustDB:CLSZ2728934
Uniprot:Q54P75
Length = 880
Score = 876 (313.4 bits), Expect = 6.1e-95, Sum P(2) = 6.1e-95
Identities = 233/713 (32%), Positives = 373/713 (52%)
Query: 13 RVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSEESFLSALKR-- 70
++GV+YYD +++ + WED N F ++ +K P++I ++ + F+ + R
Sbjct: 63 KIGVAYYDRLESNIYLCQCWEDEN--FSCLNSIKQLINPKVIIIPSRMPQKFIDNILRNL 120
Query: 71 --SDGTTEAPTVKLV-----KSSIFSYEQAWHRLIYLRVTGMD-DGLSIKERICYLNSMM 122
S+ E T K + S F++E + +RL+ L+++ + + +IK +L ++
Sbjct: 121 DDSNENNEKQTSKNTQYHYSRFSDFTFESSKNRLLNLKLSMCNTNNTTIK--YTFLQNVF 178
Query: 123 DMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAHEA 182
+ + +RA GGLL+ L ++D + ++ + I+ + ++LN++L LD +
Sbjct: 179 NFDNIEMIRAVGGLLSYLSKYILLDDFDSLDN----LIINEICPITLNQYLLLDNNTLFS 234
Query: 183 LQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNA 242
LQIF HPS G +KEG S+FG+ +K T MG++LL+ WF+RP + + R N
Sbjct: 235 LQIFSNQNHPSCYSFGNSKEGLSLFGLFDKTKTTMGKKLLKTWFMRPSRNRFVIEERQNL 294
Query: 243 ISFFLCSEE--LMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNK 300
I FF E L L + LK +KD+ IL + +S + D+ + K+ L +
Sbjct: 295 IQFFSSQENSSLKFELLDNLKNIKDLKIILSRISSSQ--NPSKDFISIYKTFHYFLKIKL 352
Query: 301 IFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVRE 360
+ SE L F ++K + L +Y+ I ++ +RE
Sbjct: 353 LIVPKNSE--------LPF--LKKLNNLYPQSLVNIYQKFESIFFFADQDDQRIS--IRE 400
Query: 361 GFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCI-FEEK 419
G +ELD+LR +Y + E L E LE V+ +L +VY Q+G L+CI EE
Sbjct: 401 GVDEELDQLRNVYLSMDEILTEHGELERVKFTNLTWITSFH-LVYYPQLGCLICIPIEES 459
Query: 420 LDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVS 479
+ + F F + L++ KT+ELD+ GDI++ ILD++ I +++V
Sbjct: 460 IAIGNQINIPSLSFIFKT----SSYLYFQNQKTKELDDFFGDIHNDILDIQSRIEKEVVD 515
Query: 480 HICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPL-LDIQNGRHVLQEMTV 538
I S ++ N+ +LDC LSLA + ++PI++ E ++IQ+GRH++QE V
Sbjct: 516 EIMSNSGSIIDLCNYCTQLDCILSLASCVQAYDLVKPIISTEQQEIEIQSGRHLIQEYCV 575
Query: 539 DTFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD-- 596
FIPNDT+ D + I++GPN SGKSIYIKQVALIVFL IGS+VPA +AT+ L D
Sbjct: 576 TNFIPNDTQNDPTKPVVIVSGPNQSGKSIYIKQVALIVFLGQIGSYVPAKSATISLFDHI 635
Query: 597 -----SKHMTA-EQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTIN 650
S+ A +SSFMID Q+ M R ATS+SL ++DE+GKGT DGI LL G +
Sbjct: 636 YTRISSRESNAISESSFMIDCKQIAQMTRFATSRSLLIIDEYGKGTNPLDGISLLYGLLV 695
Query: 651 YFVT-CDVPPKVLVCTHLTE---LLNEGCLPKSERLKFYTMS-VLRPENNSTD 698
+ +T PK +CTH E L++ ++ F TM V+ NN +
Sbjct: 696 FLLTKSPSTPKTFICTHFYEFFELISNSTDSIFNKVLFNTMEFVIETNNNQNN 748
Score = 88 (36.0 bits), Expect = 6.1e-95, Sum P(2) = 6.1e-95
Identities = 27/91 (29%), Positives = 45/91 (49%)
Query: 684 FYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQ 743
F T + + NN + E I F Y+L G + S+G+ CA +AGV V+ RA +++ +
Sbjct: 772 FNTTNKITNTNNKPN-EFIPF-YKLKEGISSSSFGILCAKIAGVNENVVNRAYEIMDHQK 829
Query: 744 NNKHVERWSHENISAQDQQYKNAVEKMLAFD 774
K + + E IS + K E + F+
Sbjct: 830 QYKTINCQNFEPISPNQSKIKKYNELLDYFE 860
>MGI|MGI:1329021 [details] [associations]
symbol:Msh5 "mutS homolog 5 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000795 "synaptonemal complex" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0007126 "meiosis"
evidence=IEA] [GO:0007127 "meiosis I" evidence=IMP] [GO:0007129
"synapsis" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0007292 "female gamete generation"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0051026 "chiasma assembly" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
MGI:MGI:1329021 GO:GO:0005524 GO:GO:0005654 EMBL:AF109905
GO:GO:0006298 Reactome:REACT_120463 GO:GO:0030983 GO:GO:0007292
GO:GO:0007131 Reactome:REACT_27235 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
EMBL:AF397035 EMBL:AF397036 KO:K08741 GeneTree:ENSGT00550000074977
CTD:4439 HOVERGEN:HBG001449 OrthoDB:EOG4WSW8Z EMBL:AF146227
EMBL:AF107352 IPI:IPI00323518 RefSeq:NP_001139687.1
RefSeq:NP_038628.2 UniGene:Mm.24192 ProteinModelPortal:Q9QUM7
SMR:Q9QUM7 STRING:Q9QUM7 PhosphoSite:Q9QUM7 PRIDE:Q9QUM7
Ensembl:ENSMUST00000007250 Ensembl:ENSMUST00000097338 GeneID:17687
KEGG:mmu:17687 UCSC:uc008cfc.2 HOGENOM:HOG000006649
InParanoid:Q9QUM7 NextBio:292260 Bgee:Q9QUM7 CleanEx:MM_MSH5
Genevestigator:Q9QUM7 GermOnline:ENSMUSG00000007035 Uniprot:Q9QUM7
Length = 833
Score = 935 (334.2 bits), Expect = 6.1e-94, P = 6.1e-94
Identities = 264/812 (32%), Positives = 420/812 (51%)
Query: 7 CIL--HGHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSEES- 63
C+L G+ +G++YYD+S +H + D S L+ V + PQ + TS K +E+
Sbjct: 52 CVLWSSGY-LGIAYYDTSDSTIHFMPDAPDHES-LKLLQRVLDEINPQSVVTSAKQDEAM 109
Query: 64 --FLSALKRSDGTT-EAPTVKLVKSSIFSYEQAWHRLIYLRVTGMDDGLSIKERICYLNS 120
FL L + + P + L+ S F E + RL+ + + D ++ E+I +L+S
Sbjct: 110 TRFLGKLASEEHREPKGPEIILLPSVDFGPEISKQRLLSGNYSFISDSMTATEKILFLSS 169
Query: 121 MMDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAH 180
++ + VRA GGLL L RI LE + G + I + L + +D +
Sbjct: 170 IIPFDCVLTVRALGGLLKFLSRRRIGVELEDYDVG---VPILGFKKFVLTHLVSIDQDTY 226
Query: 181 EALQIFQTDKHPSHMGIGRA-KEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSR 239
LQIF+++ HPS + KEG S+FG++N+C G++LLR WF RP +L LNSR
Sbjct: 227 SVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCRCKWGQKLLRLWFTRPTRELRELNSR 286
Query: 240 LNAISFFLCSEEL-MAS-LHETLKYVKDIPHILKKFNSPSFIYT-ASDWTAFLKSICSLL 296
L+ I FFL + L MA LH L ++K++P ILK+ +T SDW K++ S L
Sbjct: 287 LDVIQFFLMPQNLDMAQMLHRLLSHIKNVPLILKRMK---LSHTKVSDWQVLYKTVYSAL 343
Query: 297 HVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGT 356
+ SL + ++L DI ++ + +L ++ L+ ++D S + T
Sbjct: 344 GLRDA-----CRSLPQSIQLFQ-DIAQE----FSDDLHHIASLIGKVVDFEESLAENRFT 393
Query: 357 LVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVP-C-IVYIHQIGYLMC 414
++ ++D ++ LP FL EVA EL L + +P C ++YI IG+L+
Sbjct: 394 VL-PNIDPDIDAKKRRLIGLPSFLTEVAQKELENL-----DSRIPSCSVIYIPLIGFLLS 447
Query: 415 I--FEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERA 472
I ++ + E ++G +F F D +L Y + +T+ELD LLGD++ +I D E
Sbjct: 448 IPRLPFMVEASDFE-IEGLDFMFLSED----KLHYRSARTKELDTLLGDLHCEIRDQETL 502
Query: 473 ITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILT-LEPLLDIQNGRH 531
+ L + + L + ++ A+ LD L+LA A Y RP + + I+NGRH
Sbjct: 503 LMYQLQCQVLARASVLTRVLDLASRLDVLLALASAARDYGYSRPHYSPCIHGVRIRNGRH 562
Query: 532 VLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAA 590
L E+ TF+PN T D GR+ +ITGPN SGKSIY+KQV LI F++ +GSFVPA+ A
Sbjct: 563 PLMELCARTFVPNSTDCGGDQGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEA 622
Query: 591 TVGLTDS--------KHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGI 642
+G+ D+ + ++ S+FMIDL+QV + AT SL L+DEFGKGT + DG+
Sbjct: 623 EIGVIDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATEHSLVLIDEFGKGTNSVDGL 682
Query: 643 GLLGGTINYFVTCDVP-PKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVED 701
LL + +++ P V V T+ L+ LP+ +++ TM D ED
Sbjct: 683 ALLAAVLRHWLALGPSCPHVFVATNFLSLVQLQLLPQGPLVQYLTMETCE------DGED 736
Query: 702 IVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERWSHENISAQDQ 761
+VF Y+L G A S+ H A AG+P +I R V + ++ K ++ + Q +
Sbjct: 737 LVFFYQLCQGVASASHASHTAAQAGLPDPLIARGKEVSDLIRSGKPIKATNELLRRNQME 796
Query: 762 QYKNAVEKMLAFDVLKG--DLRLFF-QDLLPS 790
+ V+K L D+ DL +F Q++LP+
Sbjct: 797 NCQALVDKFLKLDLEDPTLDLDIFISQEVLPA 828
>RGD|1303008 [details] [associations]
symbol:Msh5 "mutS homolog 5 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=ISO;IBA] [GO:0003674
"molecular_function" evidence=ND] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0007127 "meiosis I"
evidence=ISO] [GO:0007129 "synapsis" evidence=ISO] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0007292
"female gamete generation" evidence=IEA;ISO] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0008150
"biological_process" evidence=ND] [GO:0030983 "mismatched DNA
binding" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IRD] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007696 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 RGD:1303008 GO:GO:0005524 EMBL:BX883045
GO:GO:0006298 GO:GO:0030983 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 SUPFAM:SSF48334 KO:K08741 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 CTD:4439 HOVERGEN:HBG001449
OrthoDB:EOG4WSW8Z HOGENOM:HOG000006649 EMBL:BC083904
IPI:IPI00421996 RefSeq:NP_997701.2 UniGene:Rn.44043
ProteinModelPortal:Q6MG62 STRING:Q6MG62 PRIDE:Q6MG62
Ensembl:ENSRNOT00000060762 GeneID:294252 KEGG:rno:294252
UCSC:RGD:1303008 InParanoid:Q6MG62 NextBio:637830
Genevestigator:Q6MG62 GermOnline:ENSRNOG00000000857 Uniprot:Q6MG62
Length = 831
Score = 924 (330.3 bits), Expect = 9.0e-93, P = 9.0e-93
Identities = 263/814 (32%), Positives = 423/814 (51%)
Query: 7 CIL--HGHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSEES- 63
C+L G+ +G++YYD+S +H + D S L+ V + PQ + TS K +E+
Sbjct: 50 CVLWSSGY-LGIAYYDTSDSTIHFMPDAPDHES-LKLLQRVLDEINPQSVVTSAKQDEAM 107
Query: 64 --FLSALKRSDGTT-EAPTVKLVKSSIFSYEQAWHRLIYLRVTGMDDGLSIKERICYLNS 120
FL L + + P + L+ S F E + RL+ + + + ++ E+I +L+S
Sbjct: 108 TQFLGKLASQEHREPKRPEIILLPSVDFGPEISKQRLLSGNYSFISESMTATEKILFLSS 167
Query: 121 MMDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAH 180
++ + VRA GGLL L R+ LE G + I + L + +D +
Sbjct: 168 IIPFDCVLTVRALGGLLKFLSRRRVGVELEDYSVG---VPILGFKKFVLTHLVSIDQDTY 224
Query: 181 EALQIFQTDKHPSHMGIGRA-KEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSR 239
LQIF+++ HPS + KEG S+FG++N+C G++LLR WF RP +L LNSR
Sbjct: 225 SVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCRCRWGQKLLRLWFTRPTRELRELNSR 284
Query: 240 LNAISFFLCSEEL-MASL-HETLKYVKDIPHILKKFNSPSFIYT-ASDWTAFLKSICSLL 296
L+ I FFL + L MA + H L ++K++P ILK+ +T SDW K++ S L
Sbjct: 285 LDVIEFFLMPQNLDMAQMMHRLLSHIKNVPLILKRMK---LSHTKVSDWQVLYKTVYSAL 341
Query: 297 HVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGT 356
+ SL + ++L DI ++ + +L ++ L+ ++D S + T
Sbjct: 342 GLRDA-----CRSLPQSIQLFR-DITQE----FSDDLHHIASLIGKVVDFEESLAENRFT 391
Query: 357 LVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVP-C-IVYIHQIGYLMC 414
++ E+D ++ LP FL EVA EL L C +P C ++YI IG+L+
Sbjct: 392 VL-PNIDPEIDAKKRRLMGLPSFLTEVAQKELENLDS-C----IPSCSVIYIPLIGFLLS 445
Query: 415 I--FEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERA 472
I ++ + E ++G +F F D +L Y + +T+ELD LLGD++ +I D E
Sbjct: 446 IPRLSFMVEASDFE-IEGLDFMFLSED----KLHYRSARTKELDALLGDLHCEIRDQEML 500
Query: 473 ITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILT--LEPLLDIQNGR 530
+ L + + L + ++ A+ LD L+LA A Y RP + ++ + I+NGR
Sbjct: 501 LMHQLQCQVLARAPVLTRVLDLASRLDVLLALASAARDYGYSRPHYSPCIQGVR-IKNGR 559
Query: 531 HVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADA 589
H L E+ TF+PN T D GR+ +ITGPN SGKSIY+KQV LI F++ +GSFVPA+
Sbjct: 560 HPLMELCARTFVPNSTDCGGDQGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEE 619
Query: 590 ATVGLTDS--------KHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDG 641
A +G+ D+ + ++ S+FMIDL+QV + AT SL L+DEFGKGT + DG
Sbjct: 620 AEIGVIDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATEHSLVLIDEFGKGTNSVDG 679
Query: 642 IGLLGGTINYFVTCDVP-PKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVE 700
+ LL + +++ P + V T+ L+ LP+ +++ TM N
Sbjct: 680 LALLTAVLRHWLALGPSCPHIFVATNFLSLVQLQLLPQGPLVQYLTMETCEDGN------ 733
Query: 701 DIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERWSHENIS-AQ 759
D+VF Y+L G A S+ + A AG+P +I R V ++ ++ K V+ HE + Q
Sbjct: 734 DLVFFYQLCHGVASASHASYTAAQAGLPDPLIARGKEVSDSIRSGKPVKPM-HELVRRTQ 792
Query: 760 DQQYKNAVEKMLAFDVLKG--DLRLFF-QDLLPS 790
+ + V+K L D+ DL +F Q++LP+
Sbjct: 793 MENCQALVDKFLKLDLEDPSLDLDIFISQEVLPA 826
>UNIPROTKB|F1PBG8 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
OMA:NDLVFFY GeneTree:ENSGT00550000074977 EMBL:AAEX03008217
EMBL:AAEX03008216 Ensembl:ENSCAFT00000000966 Uniprot:F1PBG8
Length = 857
Score = 789 (282.8 bits), Expect = 2.2e-82, Sum P(2) = 2.2e-82
Identities = 215/658 (32%), Positives = 341/658 (51%)
Query: 153 ESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRA-KEGFSVFGMMN 211
E N S+ I + L + +D + LQIF+++ HPS + KEG S+FG++N
Sbjct: 223 EDYNISVPILGFKKFVLTHLVSIDQDTYSVLQIFKSEPHPSVYKVASGLKEGLSLFGILN 282
Query: 212 KCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEEL-MASLHETLKYVKDIPHIL 270
+C G +LLR WF RP DLE LNSRL+ I FFL + L MA + L + I ++
Sbjct: 283 RCRCKWGEKLLRLWFTRPTQDLEELNSRLDVIQFFLLPQNLDMAQMLHRL--LGHIKNVP 340
Query: 271 KKFNSPSFIYT-ASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCI 329
+T SDW K++ S L + SL + ++L DI ++
Sbjct: 341 LILKRMKLSHTKTSDWQVLYKTVYSALGLRDA-----CRSLPQSIQLFQ-DIAQE----F 390
Query: 330 TTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELV 389
+ +L ++ L+ ++D S + + T++ ++DE ++ LP FL EVA EL
Sbjct: 391 SDDLHHIASLIGKVVDFEGSLAENHFTVL-PNIDPDIDEKKRRLMGLPSFLTEVARKELE 449
Query: 390 QLPHLCKEMFVP-C-IVYIHQIGYLMCIFE-EKLDDTTLEQLQGFEFAFSDMDGETKRLF 446
L + +P C ++YI IG+L+ I + + + +++G +F F +G +L
Sbjct: 450 NL-----DSRIPSCSVIYIPLIGFLLSIPRLPSMAEASDFEIEGLDFMFLS-EG---KLH 500
Query: 447 YHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLAL 506
Y + +T+ELD LLGD++ I D E + L + + + ++ A+ LD L+LA
Sbjct: 501 YRSARTKELDALLGDLHCDIRDQETLLMHQLQCQVLARAAVFTRVLDLASRLDVLLALAS 560
Query: 507 VAHQNNYMRPILTLEPL-LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSG 564
A Y RP + + L + IQNGRH L E+ TF+PN D GR+ +ITGPN SG
Sbjct: 561 AARDYGYSRPRYSPQLLGVRIQNGRHPLMELCARTFVPNSAECGGDRGRVKVITGPNSSG 620
Query: 565 KSIYIKQVALIVFLSHIGSFVPADAATVGLTDS--------KHMTAEQSSFMIDLHQVGM 616
KSIY+KQV LI F++ +GSFVPA+ A +G D+ + ++ S+FMIDL+QV
Sbjct: 621 KSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAK 680
Query: 617 MLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVP-PKVLVCTHLTELLNEGC 675
+ AT QSL L+DEFGKGT T DG+ LL + +++ P + V T+ L+
Sbjct: 681 AVNNATKQSLVLIDEFGKGTNTVDGLALLAAVLRHWLALGPTCPHIFVATNFLSLVQLQL 740
Query: 676 LPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRA 735
LP+ +++ TM D +D+VF Y++ G A S+ H A AG+P +++ R
Sbjct: 741 LPQGPLVQYLTMETCE------DGDDLVFFYQVCDGLAKASHASHTAAQAGLPDQLLTRG 794
Query: 736 AYVLEAAQNNKHVERWSHENISAQDQQYKNAVEKMLAFDVLKG--DLRLFF-QDLLPS 790
V + ++ K ++ Q + + V+K L D+ DL LF Q++LP+
Sbjct: 795 KEVSDLIRSGKPIKPVKELLKEKQMENCQMLVDKFLKLDLEDPNLDLDLFMSQEVLPA 852
Score = 349 (127.9 bits), Expect = 5.0e-29, Sum P(2) = 5.0e-29
Identities = 104/311 (33%), Positives = 158/311 (50%)
Query: 129 QVRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQT 188
QVRA GGLL L RI LE N S+ I + L + +D + LQIF++
Sbjct: 202 QVRALGGLLKFLGRRRIGVELEDY---NISVPILGFKKFVLTHLVSIDQDTYSVLQIFKS 258
Query: 189 DKHPSHMGIGRA-KEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFL 247
+ HPS + KEG S+FG++N+C G +LLR WF RP DLE LNSRL+ I FFL
Sbjct: 259 EPHPSVYKVASGLKEGLSLFGILNRCRCKWGEKLLRLWFTRPTQDLEELNSRLDVIQFFL 318
Query: 248 CSEEL-MAS-LHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVG 305
+ L MA LH L ++K++P ILK+ S T SDW K++ S L +
Sbjct: 319 LPQNLDMAQMLHRLLGHIKNVPLILKRMKL-SHTKT-SDWQVLYKTVYSALGLRDA---- 372
Query: 306 ISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDE 365
SL + ++L DI ++ + +L ++ L+ ++D S + + T++ +
Sbjct: 373 -CRSLPQSIQLFQ-DIAQE----FSDDLHHIASLIGKVVDFEGSLAENHFTVL-PNIDPD 425
Query: 366 LDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCIFE-EKLDDTT 424
+DE ++ LP FL EVA EL L V +YI IG+L+ I + + +
Sbjct: 426 IDEKKRRLMGLPSFLTEVARKELENLDSRIPSCSV---IYIPLIGFLLSIPRLPSMAEAS 482
Query: 425 LEQLQGFEFAF 435
+++G +F F
Sbjct: 483 DFEIEGLDFMF 493
Score = 56 (24.8 bits), Expect = 2.2e-82, Sum P(2) = 2.2e-82
Identities = 19/79 (24%), Positives = 39/79 (49%)
Query: 48 QAQPQIIYTSTKSEES---FLSALKRSDGTT-EAPTVKLVKSSIFSYEQAWHRLIYLRVT 103
+ P+ I T+ K +E+ FL L + + + P + + S F E + RL+ T
Sbjct: 97 EINPRSIVTTAKQDENMTRFLGKLASQEHSKPKRPEIIFLPSVDFGLEISKQRLLSGNYT 156
Query: 104 GMDDGLSIKERICYLNSMM 122
+ ++ E+I +L+S++
Sbjct: 157 FIPYSMTTTEKILFLSSII 175
>UNIPROTKB|E1B8D2 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007129 "synapsis" evidence=IEA] [GO:0000795 "synaptonemal
complex" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007292
GO:GO:0007129 GO:GO:0000795 SUPFAM:SSF48334 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 EMBL:DAAA02055381 IPI:IPI00710632
Ensembl:ENSBTAT00000026367 Uniprot:E1B8D2
Length = 831
Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
Identities = 252/825 (30%), Positives = 406/825 (49%)
Query: 2 QVYMACILHGHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSE 61
++++ + + +G++YYD+S +H + D S L+ V + P+ + TS K +
Sbjct: 46 EIHLCVLWNSGYLGIAYYDTSDSTIHFMPDAPDHES-LKLLQRVLDEIDPRSVVTSAKQD 104
Query: 62 ESFLSALKRSDGTTEAPTVKLVKSSIFSYEQAWHRLIYLRVTGMDDGLSI-KERIC---- 116
E+ L G KL E +I+L +D GL I K+R+
Sbjct: 105 ENMTRFL----G-------KLASQE--HREPKRPEIIFL--PSVDFGLEISKQRLLSGNY 149
Query: 117 -YLNSMMDMGSEVQVRAS----GGLLAVLENERIVDTLEQKESG------NASITIDSVI 165
+L M ++ +S LL V ++ L ++ G N S+ I
Sbjct: 150 SFLPDSMTTTEKILFLSSIIPFDCLLMVRALGGLLKFLGRRRIGVELEDYNVSVPILGFK 209
Query: 166 EVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRA-KEGFSVFGMMNKCVTPMGRRLLRN 224
+ L + +D + LQIF+++ HPS + KEG S+FG++N+C G +LLR
Sbjct: 210 KFVLTNLVSIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCRCKWGEKLLRL 269
Query: 225 WFLRPILDLENLNSRLNAISFFLCSEEL-MASLHETLKYVKDIPHILKKFNSPSFIYT-A 282
WF RP DL LNSRL+ I FFL + L MA + L + I ++ + +T
Sbjct: 270 WFTRPTQDLGELNSRLDVIQFFLLPQNLDMAQMLHRL--LGHIKNVPLILKRMTLSHTKV 327
Query: 283 SDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIG 342
SDW K++ S L + SL + ++L DI ++ + +L ++ L+
Sbjct: 328 SDWQVLYKTVYSALGLRDA-----CRSLPQSIQLFR-DIAQE----FSDDLHHIASLIGK 377
Query: 343 IIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVP- 401
++D S + T++ E+DE ++ LP FL EVA EL L + +P
Sbjct: 378 VVDFEGSLAENRFTVL-PNIDPEIDEKKRRLMGLPSFLTEVARKELENL-----DSRIPS 431
Query: 402 C-IVYIHQIGYLMCIFE-EKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLL 459
C ++YI IG+L+ I + +T+ +++G +F F + +L Y + +T+ELD LL
Sbjct: 432 CSVIYIPLIGFLLSIPRLPSMVETSDFEIEGLDFMFLSEE----KLHYRSARTKELDALL 487
Query: 460 GDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILT 519
GD++ I D E + L + + L + ++ A+ LD L+LA A Y RP +
Sbjct: 488 GDLHCDIRDQETLLMHQLQCQVLARAAVLTRVLDLASRLDVLLALASAARDYGYSRPRYS 547
Query: 520 LEPL-LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF 577
L + IQNGRH L E+ TF+PN D GR+ +ITGPN SGKSIY+KQV LI F
Sbjct: 548 PRLLGVRIQNGRHPLMELCARTFVPNSAECGGDAGRVKVITGPNSSGKSIYLKQVGLITF 607
Query: 578 LSHIGSFVPADAATVGLTDS--------KHMTAEQSSFMIDLHQVGMMLRQATSQSLCLL 629
++ +GSFVPA+ A +G D+ + ++ S+FMIDL+QV + AT +SL L+
Sbjct: 608 MALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATERSLVLV 667
Query: 630 DEFGKGTLTEDGIGLLGGTINYFVTCDVP-PKVLVCTHLTELLNEGCLPKSERLKFYTMS 688
DEFGKGT T DG+ LL I +++ P V V T+ L+ LP+ +++ TM
Sbjct: 668 DEFGKGTNTVDGLALLAAVIRHWLALGPTCPHVFVATNFLSLVQLQLLPRGPLVQYLTME 727
Query: 689 VLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHV 748
D +D+VF Y++ G A S+ H A AG+P ++I R V + ++ K +
Sbjct: 728 TCE------DGDDLVFFYQVCEGVARASHASHTAAQAGLPEKLIARGKQVSDLIRSGKPI 781
Query: 749 ERWSHENISAQDQQYKNAVEKMLAFDVLKG--DLRLFF-QDLLPS 790
+ Q + + V+K L D+ DL +F Q++LP+
Sbjct: 782 KPVKELLKEKQMENCQTLVDKFLKLDLEDPSLDLDIFMSQEVLPA 826
>UNIPROTKB|O43196 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IRD] [GO:0045143
"homologous chromosome segregation" evidence=IBA] [GO:0051026
"chiasma assembly" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=TAS] [GO:0007136 "meiotic prophase II" evidence=TAS]
[GO:0007126 "meiosis" evidence=TAS] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 EMBL:BA000025 EMBL:CH471081 EMBL:AF129756
EMBL:AL662899 EMBL:CR759787 GO:GO:0006298 Reactome:REACT_111183
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
EMBL:AL662834 GO:GO:0045143 EMBL:AF134726 EMBL:CR936239
GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334 EMBL:CR925765
KO:K08741 OMA:NDLVFFY EMBL:AF048986 EMBL:AF048991 EMBL:AF048988
EMBL:AF048989 EMBL:AF048990 EMBL:AF034759 EMBL:AF070071
EMBL:AF070079 EMBL:AF070072 EMBL:AF070073 EMBL:AF070074
EMBL:AF070075 EMBL:AF070076 EMBL:AF070077 EMBL:AF070078
EMBL:BT007200 EMBL:AY943816 EMBL:BC001358 EMBL:BC002498
EMBL:BC041031 IPI:IPI00172593 IPI:IPI00219362 IPI:IPI00297780
IPI:IPI00647584 RefSeq:NP_002432.1 RefSeq:NP_079535.4
RefSeq:NP_751897.1 RefSeq:NP_751898.1 UniGene:Hs.647011
ProteinModelPortal:O43196 SMR:O43196 IntAct:O43196 STRING:O43196
PhosphoSite:O43196 PRIDE:O43196 DNASU:4439 Ensembl:ENST00000375703
Ensembl:ENST00000375740 Ensembl:ENST00000375742
Ensembl:ENST00000375750 Ensembl:ENST00000375755
Ensembl:ENST00000416549 Ensembl:ENST00000419269
Ensembl:ENST00000427735 Ensembl:ENST00000435700
Ensembl:ENST00000436192 Ensembl:ENST00000441395
Ensembl:ENST00000441401 Ensembl:ENST00000448617
Ensembl:ENST00000456839 Ensembl:ENST00000457742
Ensembl:ENST00000497157 Ensembl:ENST00000534153
Ensembl:ENST00000578225 GeneID:4439 KEGG:hsa:4439 UCSC:uc003nwu.2
UCSC:uc003nwv.2 UCSC:uc003nwx.2 CTD:4439 GeneCards:GC06P031707
H-InvDB:HIX0165917 H-InvDB:HIX0166738 H-InvDB:HIX0167237
H-InvDB:HIX0167372 HGNC:HGNC:7328 MIM:603382 neXtProt:NX_O43196
PharmGKB:PA31136 HOVERGEN:HBG001449 OrthoDB:EOG4WSW8Z
PhylomeDB:O43196 ChiTaRS:MSH5 GenomeRNAi:4439 NextBio:17301
ArrayExpress:O43196 Bgee:O43196 CleanEx:HS_MSH5
Genevestigator:O43196 GermOnline:ENSG00000204410 GO:GO:0007136
Uniprot:O43196
Length = 834
Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
Identities = 251/829 (30%), Positives = 408/829 (49%)
Query: 2 QVYMACILHGHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSE 61
++++ + + +G++YYD+S +H + D S L+ V + PQ + TS K +
Sbjct: 49 EIHLCVLWNSGYLGIAYYDTSDSTIHFMPDAPDHES-LKLLQRVLDEINPQSVVTSAKQD 107
Query: 62 ESFLSALKRSDGTTEAPTVKLVKSSIFSYEQAWHRLIYLRVTGMDDGLSI-KERIC---- 116
E+ L G KL E +I+L +D GL I K+R+
Sbjct: 108 ENMTRFL----G-------KLASQE--HREPKRPEIIFL--PSVDFGLEISKQRLLSGNY 152
Query: 117 -YLNSMMDMGSEVQVRAS----GGLLAVLENERIVDTLEQKESG------NASITIDSVI 165
++ M ++ +S LL V ++ L ++ G N S+ I
Sbjct: 153 SFIPDAMTATEKILFLSSIIPFDCLLTVRALGGLLKFLGRRRIGVELEDYNVSVPILGFK 212
Query: 166 EVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRA-KEGFSVFGMMNKCVTPMGRRLLRN 224
+ L + +D + LQIF+++ HPS + KEG S+FG++N+C G +LLR
Sbjct: 213 KFMLTHLVNIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRL 272
Query: 225 WFLRPILDLENLNSRLNAISFFLCSEEL-MASLHETLKYVKDIPHILKKFNSPSFIYT-A 282
WF RP DL L+SRL+ I FFL + L MA + L + I ++ +T
Sbjct: 273 WFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRL--LGHIKNVPLILKRMKLSHTKV 330
Query: 283 SDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIG 342
SDW K++ S L + SL + ++L DI ++ + +L ++ L+
Sbjct: 331 SDWQVLYKTVYSALGLRDA-----CRSLPQSIQLFR-DIAQE----FSDDLHHIASLIGK 380
Query: 343 IIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVP- 401
++D S + T++ E+DE ++ LP FL EVA EL L + +P
Sbjct: 381 VVDFEGSLAENRFTVL-PNIDPEIDEKKRRLMGLPSFLTEVARKELENL-----DSRIPS 434
Query: 402 C-IVYIHQIGYLMCI--FEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNL 458
C ++YI IG+L+ I ++ + E + G +F F + +L Y + +T+ELD L
Sbjct: 435 CSVIYIPLIGFLLSIPRLPSMVEASDFE-INGLDFMFLSEE----KLHYRSARTKELDAL 489
Query: 459 LGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPIL 518
LGD++ +I D E + L + + L + ++ A+ LD L+LA A Y RP
Sbjct: 490 LGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAARDYGYSRPRY 549
Query: 519 TLEPL-LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIV 576
+ + L + IQNGRH L E+ TF+PN T D GR+ +ITGPN SGKSIY+KQV LI
Sbjct: 550 SPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLIT 609
Query: 577 FLSHIGSFVPADAATVGLTDS--------KHMTAEQSSFMIDLHQVGMMLRQATSQSLCL 628
F++ +GSFVPA+ A +G D+ + ++ S+FMIDL+QV + AT+QSL L
Sbjct: 610 FMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVL 669
Query: 629 LDEFGKGTLTEDGIGLLGGTINYFV----TCDVPPKVLVCTHLTELLNEGCLPKSERLKF 684
+DEFGKGT T DG+ LL + +++ TC P + V T+ L+ LP+ +++
Sbjct: 670 IDEFGKGTNTVDGLALLAAVLRHWLARGPTC---PHIFVATNFLSLVQLQLLPQGPLVQY 726
Query: 685 YTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQN 744
TM N D+VF Y++ G A S+ H A AG+P +++ R V + ++
Sbjct: 727 LTMETCEDGN------DLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRS 780
Query: 745 NKHVERWSHENISAQDQQYKNAVEKMLAFDVLKG--DLRLFF-QDLLPS 790
K ++ Q + + V+K + D+ DL +F Q++LP+
Sbjct: 781 GKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPA 829
>UNIPROTKB|J9NUN0 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074977 EMBL:AAEX03008217 EMBL:AAEX03008216
Ensembl:ENSCAFT00000043640 Uniprot:J9NUN0
Length = 725
Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
Identities = 215/658 (32%), Positives = 341/658 (51%)
Query: 153 ESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRA-KEGFSVFGMMN 211
E N S+ I + L + +D + LQIF+++ HPS + KEG S+FG++N
Sbjct: 91 EDYNISVPILGFKKFVLTHLVSIDQDTYSVLQIFKSEPHPSVYKVASGLKEGLSLFGILN 150
Query: 212 KCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEEL-MASLHETLKYVKDIPHIL 270
+C G +LLR WF RP DLE LNSRL+ I FFL + L MA + L + I ++
Sbjct: 151 RCRCKWGEKLLRLWFTRPTQDLEELNSRLDVIQFFLLPQNLDMAQMLHRL--LGHIKNVP 208
Query: 271 KKFNSPSFIYT-ASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCI 329
+T SDW K++ S L + SL + ++L DI ++
Sbjct: 209 LILKRMKLSHTKTSDWQVLYKTVYSALGLRDA-----CRSLPQSIQLFQ-DIAQE----F 258
Query: 330 TTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELV 389
+ +L ++ L+ ++D S + + T++ ++DE ++ LP FL EVA EL
Sbjct: 259 SDDLHHIASLIGKVVDFEGSLAENHFTVL-PNIDPDIDEKKRRLMGLPSFLTEVARKELE 317
Query: 390 QLPHLCKEMFVP-C-IVYIHQIGYLMCIFE-EKLDDTTLEQLQGFEFAFSDMDGETKRLF 446
L + +P C ++YI IG+L+ I + + + +++G +F F +G +L
Sbjct: 318 NL-----DSRIPSCSVIYIPLIGFLLSIPRLPSMAEASDFEIEGLDFMFLS-EG---KLH 368
Query: 447 YHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLAL 506
Y + +T+ELD LLGD++ I D E + L + + + ++ A+ LD L+LA
Sbjct: 369 YRSARTKELDALLGDLHCDIRDQETLLMHQLQCQVLARAAVFTRVLDLASRLDVLLALAS 428
Query: 507 VAHQNNYMRPILTLEPL-LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSG 564
A Y RP + + L + IQNGRH L E+ TF+PN D GR+ +ITGPN SG
Sbjct: 429 AARDYGYSRPRYSPQLLGVRIQNGRHPLMELCARTFVPNSAECGGDRGRVKVITGPNSSG 488
Query: 565 KSIYIKQVALIVFLSHIGSFVPADAATVGLTDS--------KHMTAEQSSFMIDLHQVGM 616
KSIY+KQV LI F++ +GSFVPA+ A +G D+ + ++ S+FMIDL+QV
Sbjct: 489 KSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAK 548
Query: 617 MLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVP-PKVLVCTHLTELLNEGC 675
+ AT QSL L+DEFGKGT T DG+ LL + +++ P + V T+ L+
Sbjct: 549 AVNNATKQSLVLIDEFGKGTNTVDGLALLAAVLRHWLALGPTCPHIFVATNFLSLVQLQL 608
Query: 676 LPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRA 735
LP+ +++ TM D +D+VF Y++ G A S+ H A AG+P +++ R
Sbjct: 609 LPQGPLVQYLTMETCE------DGDDLVFFYQVCDGLAKASHASHTAAQAGLPDQLLTRG 662
Query: 736 AYVLEAAQNNKHVERWSHENISAQDQQYKNAVEKMLAFDVLKG--DLRLFF-QDLLPS 790
V + ++ K ++ Q + + V+K L D+ DL LF Q++LP+
Sbjct: 663 KEVSDLIRSGKPIKPVKELLKEKQMENCQMLVDKFLKLDLEDPNLDLDLFMSQEVLPA 720
Score = 378 (138.1 bits), Expect = 1.2e-31, P = 1.2e-31
Identities = 117/377 (31%), Positives = 187/377 (49%)
Query: 64 FLSALKRSDGTT-EAPTVKLVKSSIFSYEQAWHRLIYLRVTGMDDGLSIKERICYLNSMM 122
FL L + + + P + + S F E + RL+ T + ++ E+I +L+S++
Sbjct: 4 FLGKLASQEHSKPKRPEIIFLPSVDFGLEISKQRLLSGNYTFIPYSMTTTEKILFLSSII 63
Query: 123 DMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAHEA 182
+ VRA GGLL L RI LE N S+ I + L + +D +
Sbjct: 64 PFDCLLTVRALGGLLKFLGRRRIGVELEDY---NISVPILGFKKFVLTHLVSIDQDTYSV 120
Query: 183 LQIFQTDKHPSHMGIGRA-KEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLN 241
LQIF+++ HPS + KEG S+FG++N+C G +LLR WF RP DLE LNSRL+
Sbjct: 121 LQIFKSEPHPSVYKVASGLKEGLSLFGILNRCRCKWGEKLLRLWFTRPTQDLEELNSRLD 180
Query: 242 AISFFLCSEEL-MAS-LHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVN 299
I FFL + L MA LH L ++K++P ILK+ S T SDW K++ S L +
Sbjct: 181 VIQFFLLPQNLDMAQMLHRLLGHIKNVPLILKRMKL-SHTKT-SDWQVLYKTVYSALGLR 238
Query: 300 KIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVR 359
SL + ++L DI ++ + +L ++ L+ ++D S + + T++
Sbjct: 239 DA-----CRSLPQSIQLFQ-DIAQE----FSDDLHHIASLIGKVVDFEGSLAENHFTVL- 287
Query: 360 EGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCIFE-E 418
++DE ++ LP FL EVA EL L V +YI IG+L+ I
Sbjct: 288 PNIDPDIDEKKRRLMGLPSFLTEVARKELENLDSRIPSCSV---IYIPLIGFLLSIPRLP 344
Query: 419 KLDDTTLEQLQGFEFAF 435
+ + + +++G +F F
Sbjct: 345 SMAEASDFEIEGLDFMF 361
>UNIPROTKB|Q5SSQ8 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL662834 EMBL:CR936239
SUPFAM:SSF48334 EMBL:CR925765 UniGene:Hs.647011 HGNC:HGNC:7328
HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00797508 SMR:Q5SSQ8
Ensembl:ENST00000436559 Ensembl:ENST00000458144 UCSC:uc011iri.2
Uniprot:Q5SSQ8
Length = 821
Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
Identities = 229/746 (30%), Positives = 376/746 (50%)
Query: 2 QVYMACILHGHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSE 61
++++ + + +G++YYD+S +H + D S L+ V + PQ + TS K +
Sbjct: 49 EIHLCVLWNSGYLGIAYYDTSDSTIHFMPDAPDHES-LKLLQRVLDEINPQSVVTSAKQD 107
Query: 62 ES---FLSALKRSDGTT-EAPTVKLVKSSIFSYEQAWHRLIYLRVTGMDDGLSIKERICY 117
E+ FL L + + P + + S F E + RL+ + + D ++ E+I +
Sbjct: 108 ENMTRFLGKLASQEHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILF 167
Query: 118 LNSMMDMGSEV----QVRASGGLLAVLENER----IVDTLEQKESG------NASITIDS 163
L+S++ + +R + L + R ++ L ++ G N S+ I
Sbjct: 168 LSSIIPFDCLLTPPGDLRFTPIPLLIPSQVRALGGLLKFLGRRRIGVELEDYNVSVPILG 227
Query: 164 VIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRA-KEGFSVFGMMNKCVTPMGRRLL 222
+ L + +D + LQIF+++ HPS + KEG S+FG++N+C G +LL
Sbjct: 228 FKKFMLTHLVNIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLL 287
Query: 223 RNWFLRPILDLENLNSRLNAISFFLCSEEL-MASLHETLKYVKDIPHILKKFNSPSFIYT 281
R WF RP DL L+SRL+ I FFL + L MA + L + I ++ +T
Sbjct: 288 RLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRL--LGHIKNVPLILKRMKLSHT 345
Query: 282 -ASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELV 340
SDW K++ S L + SL + ++L DI ++ + +L ++ L+
Sbjct: 346 KVSDWQVLYKTVYSALGLRDA-----CRSLPQSIQLFR-DIAQE----FSDDLHHIASLI 395
Query: 341 IGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFV 400
++D S + T++ E+DE ++ LP FL EVA EL L + +
Sbjct: 396 GKVVDFEGSLAENRFTVL-PNIDPEIDEKKRRLMGLPSFLTEVARKELENL-----DSRI 449
Query: 401 P-C-IVYIHQIGYLMCI--FEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELD 456
P C ++YI IG+L+ I ++ + E + G +F F + +L Y + +T+ELD
Sbjct: 450 PSCSVIYIPLIGFLLSIPRLPSMVEASDFE-INGLDFMFLSEE----KLHYRSARTKELD 504
Query: 457 NLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRP 516
LLGD++ +I D E + L + + L + ++ A+ LD L+LA A Y RP
Sbjct: 505 ALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAARDYGYSRP 564
Query: 517 ILTLEPL-LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVAL 574
+ + L + IQNGRH L E+ TF+PN T D GR+ +ITGPN SGKSIY+KQV L
Sbjct: 565 RYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQVGL 624
Query: 575 IVFLSHIGSFVPADAATVGLTDS--------KHMTAEQSSFMIDLHQVGMMLRQATSQSL 626
I F++ +GSFVPA+ A +G D+ + ++ S+FMIDL+QV + AT+QSL
Sbjct: 625 ITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSL 684
Query: 627 CLLDEFGKGTLTEDGIGLLGGTINYFV----TCDVPPKVLVCTHLTELLNEGCLPKSERL 682
L+DEFGKGT T DG+ LL + +++ TC P + V T+ L+ LP+ +
Sbjct: 685 VLIDEFGKGTNTVDGLALLAAVLRHWLARGPTC---PHIFVATNFLSLVQLQLLPQGPLV 741
Query: 683 KFYTMSVLRPENNSTDVEDIVFLYRL 708
++ TM N D+VF Y++
Sbjct: 742 QYLTMETCEDGN------DLVFFYQV 761
>UNIPROTKB|A3KGM5 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 HOGENOM:HOG000006649
IPI:IPI00893328 SMR:A3KGM5 Ensembl:ENST00000457917 Uniprot:A3KGM5
Length = 745
Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
Identities = 222/723 (30%), Positives = 366/723 (50%)
Query: 2 QVYMACILHGHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSE 61
++++ + + +G++YYD+S +H + D S L+ V + PQ + TS K +
Sbjct: 49 EIHLCVLWNSGYLGIAYYDTSDSTIHFMPDAPDHES-LKLLQRVLDEINPQSVVTSAKQD 107
Query: 62 ES---FLSALKRSDGTT-EAPTVKLVKSSIFSYEQAWHRLIYLRVTGMDDGLSIKERICY 117
E+ FL L + + P + + S F E + RL+ + + D ++ E+I +
Sbjct: 108 ENMTRFLGKLASQEHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILF 167
Query: 118 LNSMMDMGSEV----QVRASGGLLAVLENER----IVDTLEQKESG------NASITIDS 163
L+S++ + +R + L + R ++ L ++ G N S+ I
Sbjct: 168 LSSIIPFDCLLTPPGDLRFTPIPLLIPSQVRALGGLLKFLGRRRIGVELEDYNVSVPILG 227
Query: 164 VIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRA-KEGFSVFGMMNKCVTPMGRRLL 222
+ L + +D + LQIF+++ HPS + KEG S+FG++N+C G +LL
Sbjct: 228 FKKFMLTHLVNIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLL 287
Query: 223 RNWFLRPILDLENLNSRLNAISFFLCSEEL-MASLHETLKYVKDIPHILKKFNSPSFIYT 281
R WF RP DL L+SRL+ I FFL + L MA + L + I ++ +T
Sbjct: 288 RLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRL--LGHIKNVPLILKRMKLSHT 345
Query: 282 -ASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELV 340
SDW K++ S L + SL + ++L DI ++ + +L ++ L+
Sbjct: 346 KVSDWQVLYKTVYSALGLRDA-----CRSLPQSIQLFR-DIAQE----FSDDLHHIASLI 395
Query: 341 IGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFV 400
++D S + T++ E+DE ++ LP FL EVA EL L + +
Sbjct: 396 GKVVDFEGSLAENRFTVL-PNIDPEIDEKKRRLMGLPSFLTEVARKELENL-----DSRI 449
Query: 401 P-C-IVYIHQIGYLMCI--FEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELD 456
P C ++YI IG+L+ I ++ + E + G +F F + +L Y + +T+ELD
Sbjct: 450 PSCSVIYIPLIGFLLSIPRLPSMVEASDFE-INGLDFMFLSEE----KLHYRSARTKELD 504
Query: 457 NLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRP 516
LLGD++ +I D E + L + + L + ++ A+ LD L+LA A Y RP
Sbjct: 505 ALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAARDYGYSRP 564
Query: 517 ILTLEPL-LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVAL 574
+ + L + IQNGRH L E+ TF+PN T D GR+ +ITGPN SGKSIY+KQV L
Sbjct: 565 RYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQVGL 624
Query: 575 IVFLSHIGSFVPADAATVGLTDS--------KHMTAEQSSFMIDLHQ-VGMMLRQATSQS 625
I F++ +GSFVPA+ A +G D+ + ++ S+FMIDL+Q V + AT+QS
Sbjct: 625 ITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQQVAKAVNNATAQS 684
Query: 626 LCLLDEFGKGTLTEDGIGLLGGTINYFV----TCDVPPKVLVCTHLTELLNEGCLPKSER 681
L L+DEFGKGT T DG+ LL + +++ TC P + V T+ L+ LP+
Sbjct: 685 LVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTC---PHIFVATNFLSLVQLQLLPQGPL 741
Query: 682 LKF 684
+++
Sbjct: 742 VQY 744
>UNIPROTKB|A3KGM4 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00645968
SMR:A3KGM4 Ensembl:ENST00000427968 Ensembl:ENST00000458058
Uniprot:A3KGM4
Length = 727
Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
Identities = 223/720 (30%), Positives = 358/720 (49%)
Query: 2 QVYMACILHGHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSE 61
++++ + + +G++YYD+S +H + D S L+ V + PQ + TS K +
Sbjct: 49 EIHLCVLWNSGYLGIAYYDTSDSTIHFMPDAPDHES-LKLLQRVLDEINPQSVVTSAKQD 107
Query: 62 ESFLSALKRSDGTTEAPTVKLVKSSIFSYEQAWHRLIYLRVTGMDDGLSI-KERIC---- 116
E+ L G KL E +I+L +D GL I K+R+
Sbjct: 108 ENMTRFL----G-------KLASQE--HREPKRPEIIFL--PSVDFGLEISKQRLLSGNY 152
Query: 117 -YLNSMMDMGSEVQVRAS----GGLLAVLENERIVDTLEQKESG------NASITIDSVI 165
++ M ++ +S LL V ++ L ++ G N S+ I
Sbjct: 153 SFIPDAMTATEKILFLSSIIPFDCLLTVRALGGLLKFLGRRRIGVELEDYNVSVPILGFK 212
Query: 166 EVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRA-KEGFSVFGMMNKCVTPMGRRLLRN 224
+ L + +D + LQIF+++ HPS + KEG S+FG++N+C G +LLR
Sbjct: 213 KFMLTHLVNIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRL 272
Query: 225 WFLRPILDLENLNSRLNAISFFLCSEEL-MASLHETLKYVKDIPHILKKFNSPSFIYT-A 282
WF RP DL L+SRL+ I FFL + L MA + L + I ++ +T
Sbjct: 273 WFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRL--LGHIKNVPLILKRMKLSHTKV 330
Query: 283 SDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIG 342
SDW K++ S L + SL + ++L DI ++ + +L ++ L+
Sbjct: 331 SDWQVLYKTVYSALGLRDA-----CRSLPQSIQLFR-DIAQE----FSDDLHHIASLIGK 380
Query: 343 IIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVP- 401
++D S + T++ E+DE ++ LP FL EVA EL L + +P
Sbjct: 381 VVDFEGSLAENRFTVL-PNIDPEIDEKKRRLMGLPSFLTEVARKELENL-----DSRIPS 434
Query: 402 C-IVYIHQIGYLMCI--FEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNL 458
C ++YI IG+L+ I ++ + E + G +F F + +L Y + +T+ELD L
Sbjct: 435 CSVIYIPLIGFLLSIPRLPSMVEASDFE-INGLDFMFLSEE----KLHYRSARTKELDAL 489
Query: 459 LGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPIL 518
LGD++ +I D E + L + + L + ++ A+ LD L+LA A Y RP
Sbjct: 490 LGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAARDYGYSRPRY 549
Query: 519 TLEPL-LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIV 576
+ + L + IQNGRH L E+ TF+PN T D GR+ +ITGPN SGKSIY+KQV LI
Sbjct: 550 SPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLIT 609
Query: 577 FLSHIGSFVPADAATVGLTDS--------KHMTAEQSSFMIDLHQVGMMLRQATSQSLCL 628
F++ +GSFVPA+ A +G D+ + ++ S+FMIDL+QV + AT+QSL L
Sbjct: 610 FMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVL 669
Query: 629 LDEFGKGTLTEDGIGLLGGTINYFV----TCDVPPKVLVCTHLTELLNEGCLPKSERLKF 684
+DEFGKGT T DG+ LL + +++ TC P + V T+ L+ LP+ +++
Sbjct: 670 IDEFGKGTNTVDGLALLAAVLRHWLARGPTC---PHIFVATNFLSLVQLQLLPQGPLVQY 726
>UNIPROTKB|A3KGM6 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 HOGENOM:HOG000006649
IPI:IPI00978527 SMR:A3KGM6 Ensembl:ENST00000416819 Uniprot:A3KGM6
Length = 728
Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
Identities = 223/721 (30%), Positives = 358/721 (49%)
Query: 2 QVYMACILHGHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSE 61
++++ + + +G++YYD+S +H + D S L+ V + PQ + TS K +
Sbjct: 49 EIHLCVLWNSGYLGIAYYDTSDSTIHFMPDAPDHES-LKLLQRVLDEINPQSVVTSAKQD 107
Query: 62 ESFLSALKRSDGTTEAPTVKLVKSSIFSYEQAWHRLIYLRVTGMDDGLSI-KERIC---- 116
E+ L G KL E +I+L +D GL I K+R+
Sbjct: 108 ENMTRFL----G-------KLASQE--HREPKRPEIIFL--PSVDFGLEISKQRLLSGNY 152
Query: 117 -YLNSMMDMGSEVQVRAS----GGLLAVLENERIVDTLEQKESG------NASITIDSVI 165
++ M ++ +S LL V ++ L ++ G N S+ I
Sbjct: 153 SFIPDAMTATEKILFLSSIIPFDCLLTVRALGGLLKFLGRRRIGVELEDYNVSVPILGFK 212
Query: 166 EVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRA-KEGFSVFGMMNKCVTPMGRRLLRN 224
+ L + +D + LQIF+++ HPS + KEG S+FG++N+C G +LLR
Sbjct: 213 KFMLTHLVNIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRL 272
Query: 225 WFLRPILDLENLNSRLNAISFFLCSEEL-MASLHETLKYVKDIPHILKKFNSPSFIYT-A 282
WF RP DL L+SRL+ I FFL + L MA + L + I ++ +T
Sbjct: 273 WFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRL--LGHIKNVPLILKRMKLSHTKV 330
Query: 283 SDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIG 342
SDW K++ S L + SL + ++L DI ++ + +L ++ L+
Sbjct: 331 SDWQVLYKTVYSALGLRDA-----CRSLPQSIQLFR-DIAQE----FSDDLHHIASLIGK 380
Query: 343 IIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVP- 401
++D S + T++ E+DE ++ LP FL EVA EL L + +P
Sbjct: 381 VVDFEGSLAENRFTVL-PNIDPEIDEKKRRLMGLPSFLTEVARKELENL-----DSRIPS 434
Query: 402 C-IVYIHQIGYLMCI--FEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNL 458
C ++YI IG+L+ I ++ + E + G +F F + +L Y + +T+ELD L
Sbjct: 435 CSVIYIPLIGFLLSIPRLPSMVEASDFE-INGLDFMFLSEE----KLHYRSARTKELDAL 489
Query: 459 LGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPIL 518
LGD++ +I D E + L + + L + ++ A+ LD L+LA A Y RP
Sbjct: 490 LGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAARDYGYSRPRY 549
Query: 519 TLEPL-LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIV 576
+ + L + IQNGRH L E+ TF+PN T D GR+ +ITGPN SGKSIY+KQV LI
Sbjct: 550 SPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLIT 609
Query: 577 FLSHIGSFVPADAATVGLTDS--------KHMTAEQSSFMIDLHQ-VGMMLRQATSQSLC 627
F++ +GSFVPA+ A +G D+ + ++ S+FMIDL+Q V + AT+QSL
Sbjct: 610 FMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQQVAKAVNNATAQSLV 669
Query: 628 LLDEFGKGTLTEDGIGLLGGTINYFV----TCDVPPKVLVCTHLTELLNEGCLPKSERLK 683
L+DEFGKGT T DG+ LL + +++ TC P + V T+ L+ LP+ ++
Sbjct: 670 LIDEFGKGTNTVDGLALLAAVLRHWLARGPTC---PHIFVATNFLSLVQLQLLPQGPLVQ 726
Query: 684 F 684
+
Sbjct: 727 Y 727
>UNIPROTKB|F1N8B7 [details] [associations]
symbol:F1N8B7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] [GO:0000795 "synaptonemal complex"
evidence=IEA] [GO:0007129 "synapsis" evidence=IEA] [GO:0007292
"female gamete generation" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007129
GO:GO:0000795 SUPFAM:SSF48334 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 EMBL:AADN02049793 IPI:IPI00814446
Ensembl:ENSGALT00000004315 Uniprot:F1N8B7
Length = 791
Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
Identities = 206/656 (31%), Positives = 329/656 (50%)
Query: 153 ESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNK 212
E + ++ + + + L++ + +D + LQIF++D HPS + + G G
Sbjct: 158 EESSIAVPVLAFRKFVLSETVNIDQDTYCVLQIFKSDIHPS---VYKLSSGLKE-GFSLY 213
Query: 213 CVTPMGRRLLRNWFLRPILDLENLN-SRLNAISFFLCSEELMASLHETLKYVKDIPHILK 271
+ R LR L N + LN + L+A HET+ ++D +K
Sbjct: 214 GILNRCRCKWGEKLLRLWLTRPTRNLTELNK-RLDVIHFFLLAQNHETVLTLQDCLRNIK 272
Query: 272 KFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLL--NFDIVEKAASCI 329
N P + T + + K V + LR+ R L + ++ + +
Sbjct: 273 --NVPLIL---KRMTLSHTKVSDWQALYKT--VCSALCLRDTCRSLPHSIELFQIISRVF 325
Query: 330 TTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELV 389
T +L Y+ L+ ++D S + T VR +DE ++ L +FL EVA EL
Sbjct: 326 TDDLQYIASLISKVVDFEGSLSQNRFT-VRPNVDPTIDEKKRRLMGLSDFLTEVAQKELE 384
Query: 390 QLPHLCKEMFVPCIVYIHQIGYLMCI--FEEKLDDTTLEQLQGFEFAFSDMDGETKRLFY 447
L + C++YI IG+L+ I +D + E ++G +F F D +L Y
Sbjct: 385 TLDNHIPSC---CVIYIPLIGFLLSIPRLPSMVDKSDFE-IEGLDFMFLSED----KLHY 436
Query: 448 HTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALV 507
+ +T+ELD+LLGD++ +I D E I L + I S L + + A LD L+LA++
Sbjct: 437 RSARTKELDSLLGDLHCEIRDQETLIMHQLQTKILERSQVLNNVIEYTAHLDVLLALAVM 496
Query: 508 AHQNNYMRPILTLEPLLDIQNGRHVLQEMTVDTFIPNDTRI-DNDGRINIITGPNYSGKS 566
A +N+Y RP T I++GRH L E+ TF+ N + RI IITGPN SGKS
Sbjct: 497 ARENSYCRPRFTQRHGFHIKDGRHPLMELCAKTFVANPVNSGEATRRIKIITGPNSSGKS 556
Query: 567 IYIKQVALIVFLSHIGSFVPADAATVGLTDSKHM---TAEQ-----SSFMIDLHQVGMML 618
IY+KQV LI+F++ IGS+VPA A +G D + T E S+FMIDL+QV +
Sbjct: 557 IYLKQVGLIIFMALIGSYVPAAEAEIGAIDGIYTRIHTRESVSVGLSTFMIDLNQVAKAV 616
Query: 619 RQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVP-PKVLVCTHLTELLNEGCLP 677
AT +SL L+DEFGKGT T DG+ LL + Y++ P+V V T+ L+ LP
Sbjct: 617 NNATERSLVLIDEFGKGTNTLDGLALLAAVLKYWINQGTQCPQVFVSTNFHSLMQLELLP 676
Query: 678 KSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAY 737
+ L++ M E + D +++VF Y++ G + +S+ + A LAG+PA++I+R
Sbjct: 677 DTPLLEYLAM-----ETHQ-DGDELVFFYQIKQGVSTVSHAANIAALAGMPAKIIERGVE 730
Query: 738 VLEAAQNNKHVERWSHENISAQDQQYKNAVEKMLAFDVLKGDLRL---FFQDLLPS 790
V E +N K ++R H + Q ++ K VEK L+ D+ ++ L +++LPS
Sbjct: 731 VSELIRNGKAIKRIDHPSKGDQMEKCKAVVEKFLSLDLDDPNVNLEEFMHKEVLPS 786
Score = 448 (162.8 bits), Expect = 2.5e-39, P = 2.5e-39
Identities = 130/447 (29%), Positives = 225/447 (50%)
Query: 2 QVYMACILHGHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSE 61
+ +M+ + + V+YYD+ ++ + DS L+ V + P+ I TS K +
Sbjct: 8 ETHMSVLWYAGEFAVTYYDTEDCSVYFMPDTPDSEG-LELLQKVTGEVHPKCIVTSAKQD 66
Query: 62 ES---FLSALKRSDGTTEAPTVKLVKSSIFSYEQAWHRLIYLRVTGMDDGLSIKERICYL 118
++ FL++L SD + L + F E + R++ + + ++ E+I YL
Sbjct: 67 QNIANFLTSLADSDSNKGKIEIVLFPNIDFGLEVSKQRILSRQFPFIPSHMTATEKILYL 126
Query: 119 NSMMDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDAT 178
+S++ S + +RA GGLL L+ R+ +E +ES A + + + + L++ + +D
Sbjct: 127 SSVIPFESPLMIRALGGLLKYLDRRRV--GVELEESSIA-VPVLAFRKFVLSETVNIDQD 183
Query: 179 AHEALQIFQTDKHPSHMGIGRA-KEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLN 237
+ LQIF++D HPS + KEGFS++G++N+C G +LLR W RP +L LN
Sbjct: 184 TYCVLQIFKSDIHPSVYKLSSGLKEGFSLYGILNRCRCKWGEKLLRLWLTRPTRNLTELN 243
Query: 238 SRLNAISFFLCSE--ELMASLHETLKYVKDIPHILKKFNSPSFIYT-ASDWTAFLKSICS 294
RL+ I FFL ++ E + +L + L+ +K++P ILK+ + +T SDW A K++CS
Sbjct: 244 KRLDVIHFFLLAQNHETVLTLQDCLRNIKNVPLILKRM---TLSHTKVSDWQALYKTVCS 300
Query: 295 LLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGY 354
L + SL + L F I+ + T +L Y+ L+ ++D S +
Sbjct: 301 ALCLRDT-----CRSLPHSIEL--FQIISRV---FTDDLQYIASLISKVVDFEGSLSQNR 350
Query: 355 GTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMC 414
T VR +DE ++ L +FL EVA EL L + C++YI IG+L+
Sbjct: 351 FT-VRPNVDPTIDEKKRRLMGLSDFLTEVAQKELETLDNHIPSC---CVIYIPLIGFLLS 406
Query: 415 I--FEEKLDDTTLEQLQGFEFAFSDMD 439
I +D + E ++G +F F D
Sbjct: 407 IPRLPSMVDKSDFE-IEGLDFMFLSED 432
>UNIPROTKB|B4DZX3 [details] [associations]
symbol:MSH5 "cDNA FLJ54211, highly similar to MutS protein
homolog 5" species:9606 "Homo sapiens" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AL662899
EMBL:CR759787 GO:GO:0006298 GO:GO:0030983 EMBL:AL662834
EMBL:CR936239 SUPFAM:SSF48334 EMBL:CR925765 UniGene:Hs.647011
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 EMBL:AK303129
IPI:IPI01015677 SMR:B4DZX3 STRING:B4DZX3 Ensembl:ENST00000431848
Ensembl:ENST00000547775 Ensembl:ENST00000549618
Ensembl:ENST00000551879 Uniprot:B4DZX3
Length = 533
Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
Identities = 171/529 (32%), Positives = 275/529 (51%)
Query: 283 SDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIG 342
SDW K++ S L + SL + ++L DI ++ + +L ++ L+
Sbjct: 30 SDWQVLYKTVYSALGLRDA-----CRSLPQSIQLFR-DIAQE----FSDDLHHIASLIGK 79
Query: 343 IIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVP- 401
++D S + T++ E+DE ++ LP FL EVA EL L + +P
Sbjct: 80 VVDFEGSLAENRFTVL-PNIDPEIDEKKRRLMGLPSFLTEVARKELENL-----DSRIPS 133
Query: 402 C-IVYIHQIGYLMCI--FEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNL 458
C ++YI IG+L+ I ++ + E + G +F F + +L Y + +T+ELD L
Sbjct: 134 CSVIYIPLIGFLLSIPRLPSMVEASDFE-INGLDFMFLSEE----KLHYRSARTKELDAL 188
Query: 459 LGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPIL 518
LGD++ +I D E + L + + L + ++ A+ LD L+LA A Y RP
Sbjct: 189 LGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAARDYGYSRPRY 248
Query: 519 TLEPL-LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIV 576
+ + L + IQNGRH L E+ TF+PN T D GR+ +ITGPN SGKSIY+KQV LI
Sbjct: 249 SPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLIT 308
Query: 577 FLSHIGSFVPADAATVGLTDS--------KHMTAEQSSFMIDLHQVGMMLRQATSQSLCL 628
F++ +GSFVPA+ A +G D+ + ++ S+FMIDL+QV + AT+QSL L
Sbjct: 309 FMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVL 368
Query: 629 LDEFGKGTLTEDGIGLLGGTINYFV----TCDVPPKVLVCTHLTELLNEGCLPKSERLKF 684
+DEFGKGT T DG+ LL + +++ TC P + V T+ L+ LP+ +++
Sbjct: 369 IDEFGKGTNTVDGLALLAAVLRHWLARGPTC---PHIFVATNFLSLVQLQLLPQGPLVQY 425
Query: 685 YTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQN 744
TM N D+VF Y++ G A S+ H A AG+P +++ R V + ++
Sbjct: 426 LTMETCEDGN------DLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRS 479
Query: 745 NKHVERWSHENISAQDQQYKNAVEKMLAFDVLKG--DLRLFF-QDLLPS 790
K ++ Q + + V+K + D+ DL +F Q++LP+
Sbjct: 480 GKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPA 528
Score = 123 (48.4 bits), Expect = 0.00047, P = 0.00047
Identities = 49/183 (26%), Positives = 84/183 (45%)
Query: 256 LHETLKYVKDIPHILKKFNSPSFIYT-ASDWTAFLKSICSLLHVNKIFEVGISESLREQL 314
LH L ++K++P ILK+ +T SDW K++ S L + SL + +
Sbjct: 5 LHRLLGHIKNVPLILKRMK---LSHTKVSDWQVLYKTVYSALGLRDA-----CRSLPQSI 56
Query: 315 RLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYE 374
+L DI ++ + +L ++ L+ ++D S + T++ E+DE ++
Sbjct: 57 QLFR-DIAQE----FSDDLHHIASLIGKVVDFEGSLAENRFTVL-PNIDPEIDEKKRRLM 110
Query: 375 ELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCI--FEEKLDDTTLEQLQGFE 432
LP FL EVA EL L V +YI IG+L+ I ++ + E + G +
Sbjct: 111 GLPSFLTEVARKELENLDSRIPSCSV---IYIPLIGFLLSIPRLPSMVEASDFE-INGLD 166
Query: 433 FAF 435
F F
Sbjct: 167 FMF 169
>UNIPROTKB|A2ABF0 [details] [associations]
symbol:MSH5 "cDNA FLJ39914 fis, clone SPLEN2018732, highly
similar to MutS protein homolog 5" species:9606 "Homo sapiens"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:AL662899 EMBL:BX248244 EMBL:CR759787 GO:GO:0006298
GO:GO:0030983 EMBL:AL662834 EMBL:CR936239 SUPFAM:SSF48334
EMBL:CR759915 EMBL:CR925765 UniGene:Hs.647011 HGNC:HGNC:7328
HOVERGEN:HBG001449 ChiTaRS:MSH5 EMBL:BX248133 EMBL:AK097233
IPI:IPI00798222 SMR:A2ABF0 STRING:A2ABF0 Ensembl:ENST00000395853
Ensembl:ENST00000414412 Ensembl:ENST00000430216
Ensembl:ENST00000436004 Ensembl:ENST00000439816
Ensembl:ENST00000448169 HOGENOM:HOG000231215 Uniprot:A2ABF0
Length = 508
Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
Identities = 165/504 (32%), Positives = 264/504 (52%)
Query: 310 LREQLRLL--NFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELD 367
LR+ R L + + A + +L ++ L+ ++D S + T++ E+D
Sbjct: 20 LRDACRSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVL-PNIDPEID 78
Query: 368 ELRQIYEELPEFLEEVASLELVQLPHLCKEMFVP-C-IVYIHQIGYLMCI--FEEKLDDT 423
E ++ LP FL EVA EL L + +P C ++YI IG+L+ I ++ +
Sbjct: 79 EKKRRLMGLPSFLTEVARKELENL-----DSRIPSCSVIYIPLIGFLLSIPRLPSMVEAS 133
Query: 424 TLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICL 483
E + G +F F + +L Y + +T+ELD LLGD++ +I D E + L +
Sbjct: 134 DFE-INGLDFMFLSEE----KLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLA 188
Query: 484 FSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPL-LDIQNGRHVLQEMTVDTFI 542
+ L + ++ A+ LD L+LA A Y RP + + L + IQNGRH L E+ TF+
Sbjct: 189 RAAVLTRVLDLASRLDVLLALASAARDYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFV 248
Query: 543 PNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS---- 597
PN T D GR+ +ITGPN SGKSIY+KQV LI F++ +GSFVPA+ A +G D+
Sbjct: 249 PNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTR 308
Query: 598 ----KHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFV 653
+ ++ S+FMIDL+QV + AT+QSL L+DEFGKGT T DG+ LL + +++
Sbjct: 309 IHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWL 368
Query: 654 ----TCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLV 709
TC P + V T+ L+ LP+ +++ TM N D+VF Y++
Sbjct: 369 ARGPTC---PHIFVATNFLSLVQLQLLPQGPLVQYLTMETCEDGN------DLVFFYQVC 419
Query: 710 PGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERWSHENISAQDQQYKNAVEK 769
G A S+ H A AG+P +++ R V + ++ K ++ Q + + V+K
Sbjct: 420 EGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDK 479
Query: 770 MLAFDVLKG--DLRLFF-QDLLPS 790
+ D+ DL +F Q++LP+
Sbjct: 480 FMKLDLEDPNLDLNVFMSQEVLPA 503
>UNIPROTKB|A2BEX4 [details] [associations]
symbol:MSH5-SAPCD1 "MutS protein homolog 5" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:BX248244 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
EMBL:CR759915 UniGene:Hs.647011 HGNC:HGNC:7328 HOVERGEN:HBG001449
ChiTaRS:MSH5 EMBL:BX248133 SMR:A2BEX4 Ensembl:ENST00000414514
Ensembl:ENST00000414810 Ensembl:ENST00000437726
Ensembl:ENST00000454820 Ensembl:ENST00000466318
Ensembl:ENST00000495073 HGNC:HGNC:41994 Uniprot:A2BEX4
Length = 496
Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
Identities = 165/504 (32%), Positives = 264/504 (52%)
Query: 310 LREQLRLL--NFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELD 367
LR+ R L + + A + +L ++ L+ ++D S + T++ E+D
Sbjct: 8 LRDACRSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVL-PNIDPEID 66
Query: 368 ELRQIYEELPEFLEEVASLELVQLPHLCKEMFVP-C-IVYIHQIGYLMCI--FEEKLDDT 423
E ++ LP FL EVA EL L + +P C ++YI IG+L+ I ++ +
Sbjct: 67 EKKRRLMGLPSFLTEVARKELENL-----DSRIPSCSVIYIPLIGFLLSIPRLPSMVEAS 121
Query: 424 TLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICL 483
E + G +F F + +L Y + +T+ELD LLGD++ +I D E + L +
Sbjct: 122 DFE-INGLDFMFLSEE----KLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLA 176
Query: 484 FSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPL-LDIQNGRHVLQEMTVDTFI 542
+ L + ++ A+ LD L+LA A Y RP + + L + IQNGRH L E+ TF+
Sbjct: 177 RAAVLTRVLDLASRLDVLLALASAARDYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFV 236
Query: 543 PNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS---- 597
PN T D GR+ +ITGPN SGKSIY+KQV LI F++ +GSFVPA+ A +G D+
Sbjct: 237 PNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTR 296
Query: 598 ----KHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFV 653
+ ++ S+FMIDL+QV + AT+QSL L+DEFGKGT T DG+ LL + +++
Sbjct: 297 IHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWL 356
Query: 654 ----TCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLV 709
TC P + V T+ L+ LP+ +++ TM N D+VF Y++
Sbjct: 357 ARGPTC---PHIFVATNFLSLVQLQLLPQGPLVQYLTMETCEDGN------DLVFFYQVC 407
Query: 710 PGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERWSHENISAQDQQYKNAVEK 769
G A S+ H A AG+P +++ R V + ++ K ++ Q + + V+K
Sbjct: 408 EGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDK 467
Query: 770 MLAFDVLKG--DLRLFF-QDLLPS 790
+ D+ DL +F Q++LP+
Sbjct: 468 FMKLDLEDPNLDLNVFMSQEVLPA 491
>UNIPROTKB|A2BEX2 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:BX248244 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
EMBL:CR759915 UniGene:Hs.647011 HGNC:HGNC:7328 HOVERGEN:HBG001449
ChiTaRS:MSH5 EMBL:BX248133 SMR:A2BEX2 Ensembl:ENST00000426512
Ensembl:ENST00000442688 Uniprot:A2BEX2
Length = 497
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 165/505 (32%), Positives = 264/505 (52%)
Query: 310 LREQLRLL--NFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELD 367
LR+ R L + + A + +L ++ L+ ++D S + T++ E+D
Sbjct: 8 LRDACRSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVL-PNIDPEID 66
Query: 368 ELRQIYEELPEFLEEVASLELVQLPHLCKEMFVP-C-IVYIHQIGYLMCI--FEEKLDDT 423
E ++ LP FL EVA EL L + +P C ++YI IG+L+ I ++ +
Sbjct: 67 EKKRRLMGLPSFLTEVARKELENL-----DSRIPSCSVIYIPLIGFLLSIPRLPSMVEAS 121
Query: 424 TLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICL 483
E + G +F F + +L Y + +T+ELD LLGD++ +I D E + L +
Sbjct: 122 DFE-INGLDFMFLSEE----KLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLA 176
Query: 484 FSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPL-LDIQNGRHVLQEMTVDTFI 542
+ L + ++ A+ LD L+LA A Y RP + + L + IQNGRH L E+ TF+
Sbjct: 177 RAAVLTRVLDLASRLDVLLALASAARDYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFV 236
Query: 543 PNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS---- 597
PN T D GR+ +ITGPN SGKSIY+KQV LI F++ +GSFVPA+ A +G D+
Sbjct: 237 PNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTR 296
Query: 598 ----KHMTAEQSSFMIDLHQ-VGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYF 652
+ ++ S+FMIDL+Q V + AT+QSL L+DEFGKGT T DG+ LL + ++
Sbjct: 297 IHSCESISLGLSTFMIDLNQQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHW 356
Query: 653 V----TCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRL 708
+ TC P + V T+ L+ LP+ +++ TM N D+VF Y++
Sbjct: 357 LARGPTC---PHIFVATNFLSLVQLQLLPQGPLVQYLTMETCEDGN------DLVFFYQV 407
Query: 709 VPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERWSHENISAQDQQYKNAVE 768
G A S+ H A AG+P +++ R V + ++ K ++ Q + + V+
Sbjct: 408 CEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRSGKPIKPVKDLLKKNQMENCQTLVD 467
Query: 769 KMLAFDVLKG--DLRLFF-QDLLPS 790
K + D+ DL +F Q++LP+
Sbjct: 468 KFMKLDLEDPNLDLNVFMSQEVLPA 492
>UNIPROTKB|Q7SCW0 [details] [associations]
symbol:NCU09384 "Predicted protein" species:367110
"Neurospora crassa OR74A" [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0051026 "chiasma assembly" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IRD] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0032300 "mismatch repair complex" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334 HSSP:Q56215 KO:K08741
OrthoDB:EOG4W6S4H EMBL:AABX02000082 RefSeq:XP_963830.1
ProteinModelPortal:Q7SCW0 STRING:Q7SCW0
EnsemblFungi:EFNCRT00000009472 GeneID:3879979 KEGG:ncr:NCU09384
OMA:INVICER Uniprot:Q7SCW0
Length = 506
Score = 388 (141.6 bits), Expect = 6.9e-55, Sum P(2) = 6.9e-55
Identities = 95/237 (40%), Positives = 138/237 (58%)
Query: 556 IITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD------SKHMTA--EQSSF 607
++TGPN SGKSIY+KQVALI++L+HIGS+VP AT+G+TD + TA ++S+F
Sbjct: 237 VLTGPNNSGKSIYMKQVALIIYLAHIGSYVPVTRATIGVTDRIFTRVATRETAMDDESAF 296
Query: 608 MIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVP-PKVLVCTH 666
M DL Q + AT +SL L DEFGKGT E G + +++F+ D P++LV TH
Sbjct: 297 MTDLKQAAFSINFATRRSLILADEFGKGTTMEAGAAVFTAYLHHFLELDADRPRMLVSTH 356
Query: 667 LTELLNEGCLPKSERLKFYTMSV-LRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLA 725
++ N G L E + + M V L PE + E I +LYRLV G A S GL CA +
Sbjct: 357 FHDVFNRGFLKPEEGVAYAHMEVRLNPEAEERE-EHITYLYRLVHGRAEHSLGLMCAAIN 415
Query: 726 GVPAEVIKRAAYVLEAAQNNKHVERW----SHENISAQDQQYKNAVEKMLAFDVLKG 778
+ +V+KRA +L + ++ +E SHE+I A + + + LA D+ +G
Sbjct: 416 HIEDDVLKRAGDILGMLERDEDIEAVFASPSHEDIEAF-KAAELVARRFLATDIPQG 471
Score = 213 (80.0 bits), Expect = 6.9e-55, Sum P(2) = 6.9e-55
Identities = 51/186 (27%), Positives = 93/186 (50%)
Query: 361 GFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCI-FEEK 419
G + L EL+ + ++ + L +V L Q+P + C + ++G+L+ + +
Sbjct: 22 GTSERLGELKDDFTQVYQILADVKQEILTQIPKWAVQYVQECTT-VPRLGFLIVVALNPE 80
Query: 420 LDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVS 479
+ + + + + +R +Y ELD++ GD+ +I D E + +L
Sbjct: 81 SGEGAFNGTGLADDEWHQVVKDEQRAYYKNRTMVELDDMYGDLTEEIADEEIEVIVELAG 140
Query: 480 HICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTVD 539
+ D L++A+ ELD L+LA A + N+ P +T E ++DI+ GRH LQE+ V
Sbjct: 141 AVSEHEDALIRALEVLGELDSLLALAFAAEKYNWAAPKMTSENIIDIEGGRHPLQELLVP 200
Query: 540 TFIPND 545
+FIPND
Sbjct: 201 SFIPND 206
>UNIPROTKB|H7C2J4 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
SMART:SM00533 GO:GO:0005524 EMBL:AL662899 GO:GO:0006298
GO:GO:0030983 SUPFAM:SSF48334 HGNC:HGNC:7328 ChiTaRS:MSH5
ProteinModelPortal:H7C2J4 Ensembl:ENST00000423982 Bgee:H7C2J4
Uniprot:H7C2J4
Length = 637
Score = 541 (195.5 bits), Expect = 6.0e-52, P = 6.0e-52
Identities = 185/600 (30%), Positives = 293/600 (48%)
Query: 2 QVYMACILHGHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSE 61
++++ + + +G++YYD+S +H + D S L+ V + PQ + TS K +
Sbjct: 49 EIHLCVLWNSGYLGIAYYDTSDSTIHFMPDAPDHES-LKLLQRVLDEINPQSVVTSAKQD 107
Query: 62 ES---FLSALKRSDGTT-EAPTVKLVKSSIFSYEQAWHRLIYLRVTGMDDGLSIKERICY 117
E+ FL L + + P + + S F E + RL+ + + D ++ E+I +
Sbjct: 108 ENMTRFLGKLASQEHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILF 167
Query: 118 LNSMMDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDA 177
L+S++ + VRA GGLL L RI LE N S+ I + L + +D
Sbjct: 168 LSSIIPFDCLLTVRALGGLLKFLGRRRIGVELEDY---NVSVPILGFKKFMLTHLVNIDQ 224
Query: 178 TAHEALQIFQTDKHPSHMGIGRA-KEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENL 236
+ LQIF+++ HPS + KEG S+FG++N+C G +LLR WF RP DL L
Sbjct: 225 DTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGEL 284
Query: 237 NSRLNAISFFLCSEEL-MAS-LHETLKYVKDIPHILKKFNSPSFIYT-ASDWTAFLKSIC 293
+SRL+ I FFL + L MA LH L ++K++P ILK+ +T SDW K++
Sbjct: 285 SSRLDVIQFFLLPQNLDMAQMLHRLLGHIKNVPLILKRMK---LSHTKVSDWQVLYKTVY 341
Query: 294 SLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKG 353
S L + SL + ++L DI ++ + +L ++ L+ ++D S +
Sbjct: 342 SALGLRDA-----CRSLPQSIQLFR-DIAQE----FSDDLHHIASLIGKVVDFEGSLAEN 391
Query: 354 YGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVP-C-IVYIHQIGY 411
T++ E+DE ++ LP FL EVA EL L + +P C ++YI IG+
Sbjct: 392 RFTVL-PNIDPEIDEKKRRLMGLPSFLTEVARKELENL-----DSRIPSCSVIYIPLIGF 445
Query: 412 LMCI--FEEKLDDTTLEQLQGFEFAFSDMD------GETKRLF-----YHTPKTRELDNL 458
L+ I ++ + E + G +F F + TK L H + R+ + L
Sbjct: 446 LLSIPRLPSMVEASDFE-INGLDFMFLSEEKLHYRSARTKELDALLGDLHC-EIRDQETL 503
Query: 459 LG-DIYHKILDMERAITR--DLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMR 515
L + ++L +TR DL S + D LL A+ AA D S + Y
Sbjct: 504 LMYQLQCQVLARAAVLTRVLDLASRL----DVLL-ALASAAR-DYGYS------RPRYSP 551
Query: 516 PILTLEPLLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVAL 574
+L + IQNGRH L E+ TF+PN T D GR+ +ITGPN SGKSIY+KQ+ +
Sbjct: 552 QVLGVR----IQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQLRI 607
>TIGR_CMR|DET_1219 [details] [associations]
symbol:DET_1219 "DNA mismatch repair protein MutS"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_181932.1 ProteinModelPortal:Q3Z767
STRING:Q3Z767 GeneID:3229472 KEGG:det:DET1219 PATRIC:21609473
OMA:HIHAKTL BioCyc:DETH243164:GJNF-1220-MONOMER Uniprot:Q3Z767
Length = 858
Score = 478 (173.3 bits), Expect = 9.4e-52, Sum P(2) = 9.4e-52
Identities = 138/405 (34%), Positives = 213/405 (52%)
Query: 353 GYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYL 412
G G ++R GF E+D+L + + FL ++ + E Q K + + Y GY
Sbjct: 417 GEGKVIRSGFNPEMDKLCSLAGDARTFLSQMEAREREQTG--IKSLKLG---YNRVFGYY 471
Query: 413 MCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERA 472
+ + L D Q + + ++ E + TP+ +E +NL+ + ++L+ME
Sbjct: 472 IEVSNANLADIP----QNYIRKQTLVNAER----FITPELKEYENLILNAKERLLEMETG 523
Query: 473 ITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRH- 531
+ +++ + F LL A LD + A VA +N Y+RP+ E L I GRH
Sbjct: 524 LYEQVLNQLGGFYSALLSNAAALASLDVLSAFAEVAVRNGYVRPLFHSENSLVIHRGRHP 583
Query: 532 -VLQEMTVDTFIPNDTRID-NDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADA 589
V Q + +F ND + D +I I+TGPN +GKS Y+KQ ALIV ++ IGS+VPA+
Sbjct: 584 MVEQGLGYGSFAANDISLSAEDCQIIILTGPNMAGKSTYLKQTALIVLMAQIGSYVPAET 643
Query: 590 ATVGLTDS--------KHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDG 641
A + LTD + ++A QS+FM+++ + +L ATS+SL +LDE G+GT T DG
Sbjct: 644 AELCLTDRIFSRIGAREDLSAGQSTFMVEMVETASILNTATSRSLLILDEIGRGTSTYDG 703
Query: 642 IGLLGGTINYFVTC-DVPPKVLVCTHLTELLN-EGCLPKSERLKFYTMSVLRPENNSTDV 699
+ + + Y + + K L TH EL+ LP R+K Y ++V S D
Sbjct: 704 LAIAQAVVEYIHSQPSLHAKTLFATHYHELVELANYLP---RVKNYNIAV------SEDR 754
Query: 700 EDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQN 744
++VFL+R+VPG SYG+H A LAG+P VIKRA VL +N
Sbjct: 755 GEVVFLHRIVPGGVDKSYGIHVAKLAGLPGWVIKRAYEVLTELEN 799
Score = 132 (51.5 bits), Expect = 9.4e-52, Sum P(2) = 9.4e-52
Identities = 56/254 (22%), Positives = 119/254 (46%)
Query: 137 LAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMG 196
LAV +++ LE+ + + ++ + +++ ++++D+ L+IF++ G
Sbjct: 225 LAVSAAGALLNYLEETQKSSLK-QLERLAAYTISDYMQIDSHTLSNLEIFRSS------G 277
Query: 197 IGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASL 256
G + +G S+ G++++ T MG RLLR + +P+L E++ RL+A+ +F ASL
Sbjct: 278 -GNSLKG-SLLGVLDQTKTAMGGRLLRKFLGQPLLRQEDIEKRLSAVDYFFEESLARASL 335
Query: 257 HETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRL 316
+ L + D+ I + + + + + S+ ++ +++ F L RL
Sbjct: 336 AKALGQIADMERIANRIRQKTIL--PKELISLKNSLETVSAIHRQF------GLMPPPRL 387
Query: 317 LNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEEL 376
F K L + ++V I+ + G G ++R GF E+D+L + +
Sbjct: 388 AYFLNGLKP-------LPEMLDIVNEAINDDPPSTLGEGKVIRSGFNPEMDKLCSLAGDA 440
Query: 377 PEFLEEVASLELVQ 390
FL ++ + E Q
Sbjct: 441 RTFLSQMEAREREQ 454
>UNIPROTKB|B0V0L9 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334 EMBL:CR759915
UniGene:Hs.647011 HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5
SMR:B0V0L9 Ensembl:ENST00000458424 Uniprot:B0V0L9
Length = 466
Score = 537 (194.1 bits), Expect = 1.8e-51, P = 1.8e-51
Identities = 144/419 (34%), Positives = 224/419 (53%)
Query: 310 LREQLRLL--NFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELD 367
LR+ R L + + A + +L ++ L+ ++D S + T++ E+D
Sbjct: 8 LRDACRSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVL-PNIDPEID 66
Query: 368 ELRQIYEELPEFLEEVASLELVQLPHLCKEMFVP-C-IVYIHQIGYLMCI--FEEKLDDT 423
E ++ LP FL EVA EL L + +P C ++YI IG+L+ I ++ +
Sbjct: 67 EKKRRLMGLPSFLTEVARKELENL-----DSRIPSCSVIYIPLIGFLLSIPRLPSMVEAS 121
Query: 424 TLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICL 483
E + G +F F + +L Y + +T+ELD LLGD++ +I D E + L +
Sbjct: 122 DFE-INGLDFMFLSEE----KLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLA 176
Query: 484 FSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPL-LDIQNGRHVLQEMTVDTFI 542
+ L + ++ A+ LD L+LA A Y RP + + L + IQNGRH L E+ TF+
Sbjct: 177 RAAVLTRVLDLASRLDVLLALASAARDYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFV 236
Query: 543 PNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS---- 597
PN T D GR+ +ITGPN SGKSIY+KQV LI F++ +GSFVPA+ A +G D+
Sbjct: 237 PNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTR 296
Query: 598 ----KHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFV 653
+ ++ S+FMIDL+QV + AT+QSL L+DEFGKGT T DG+ LL + +++
Sbjct: 297 IHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWL 356
Query: 654 ----TCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRL 708
TC P + V T+ L+ LP+ +++ TM N D+VF Y++
Sbjct: 357 ARGPTC---PHIFVATNFLSLVQLQLLPQGPLVQYLTMETCEDGN------DLVFFYQV 406
>UNIPROTKB|A2BEX3 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:BX248244 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 EMBL:BX248133
SMR:A2BEX3 Ensembl:ENST00000444225 Uniprot:A2BEX3
Length = 467
Score = 528 (190.9 bits), Expect = 1.9e-50, P = 1.9e-50
Identities = 144/420 (34%), Positives = 224/420 (53%)
Query: 310 LREQLRLL--NFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELD 367
LR+ R L + + A + +L ++ L+ ++D S + T++ E+D
Sbjct: 8 LRDACRSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVL-PNIDPEID 66
Query: 368 ELRQIYEELPEFLEEVASLELVQLPHLCKEMFVP-C-IVYIHQIGYLMCI--FEEKLDDT 423
E ++ LP FL EVA EL L + +P C ++YI IG+L+ I ++ +
Sbjct: 67 EKKRRLMGLPSFLTEVARKELENL-----DSRIPSCSVIYIPLIGFLLSIPRLPSMVEAS 121
Query: 424 TLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICL 483
E + G +F F + +L Y + +T+ELD LLGD++ +I D E + L +
Sbjct: 122 DFE-INGLDFMFLSEE----KLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLA 176
Query: 484 FSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPL-LDIQNGRHVLQEMTVDTFI 542
+ L + ++ A+ LD L+LA A Y RP + + L + IQNGRH L E+ TF+
Sbjct: 177 RAAVLTRVLDLASRLDVLLALASAARDYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFV 236
Query: 543 PNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS---- 597
PN T D GR+ +ITGPN SGKSIY+KQV LI F++ +GSFVPA+ A +G D+
Sbjct: 237 PNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTR 296
Query: 598 ----KHMTAEQSSFMIDLHQ-VGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYF 652
+ ++ S+FMIDL+Q V + AT+QSL L+DEFGKGT T DG+ LL + ++
Sbjct: 297 IHSCESISLGLSTFMIDLNQQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHW 356
Query: 653 V----TCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRL 708
+ TC P + V T+ L+ LP+ +++ TM N D+VF Y++
Sbjct: 357 LARGPTC---PHIFVATNFLSLVQLQLLPQGPLVQYLTMETCEDGN------DLVFFYQV 407
>UNIPROTKB|Q8A334 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:226186 "Bacteroides thetaiotaomicron VPI-5482" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:AE015928 GenomeReviews:AE015928_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_812033.1
ProteinModelPortal:Q8A334 GeneID:1075929 KEGG:bth:BT_3121
PATRIC:21061245 BioCyc:BTHE226186:GJXV-3185-MONOMER Uniprot:Q8A334
Length = 862
Score = 466 (169.1 bits), Expect = 6.7e-50, Sum P(2) = 6.7e-50
Identities = 134/407 (32%), Positives = 215/407 (52%)
Query: 355 GTLVREGFCDELDELRQIYEELPEFLEEVASLELVQ--LPHLCKEMFVPCIVYIHQIGYL 412
G ++++G +ELDELR+I ++L ++ E Q +P L K + Y + GY
Sbjct: 413 GGVIKDGVNEELDELRRISYSGKDYLLQIQQRESEQTGIPSL-K------VAYNNVFGYY 465
Query: 413 MCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERA 472
+ + D E ++ +R K E + +LG KIL +E
Sbjct: 466 IEVRNIHKDKVPQEWIRKQTLV------NAERYITQELKVYE-EKILG-AEDKILVLETQ 517
Query: 473 ITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHV 532
+ DLV + F + N A LDC LS A VA +NNY+RP++ +LDI+ GRH
Sbjct: 518 LYTDLVQALTEFIPQIQINANQIARLDCLLSFANVARENNYIRPVIEDNDVLDIRQGRHP 577
Query: 533 LQEMTV---DTFIPNDTRIDNDGR-INIITGPNYSGKSIYIKQVALIVFLSHIGSFVPAD 588
+ E + + +I ND +D+ + I IITGPN +GKS ++Q ALI L+ IGSFVPA+
Sbjct: 578 VIEKQLPIGEKYIANDVMLDSASQQIIIITGPNMAGKSALLRQTALITLLAQIGSFVPAE 637
Query: 589 AATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTED 640
+A +GL D S +++ +S+FM+++++ +L +S+SL L DE G+GT T D
Sbjct: 638 SAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILNNVSSRSLVLFDELGRGTSTYD 697
Query: 641 GIGLLGGTINYFVTCD-VPPKVLVCTHLTELLNEGCLPKS-ERLKFYTMSVLRPENNSTD 698
GI + + Y + L TH EL NE + KS +R+K Y +SV +N
Sbjct: 698 GISIAWAIVEYIHEHPKAKARTLFATHYHEL-NE--MEKSFKRIKNYNVSVKEVDNK--- 751
Query: 699 VEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNN 745
++FL +L G + S+G+H A +AG+P ++KRA +L+ +++
Sbjct: 752 ---VIFLRKLERGGSEHSFGIHVAKMAGMPKSIVKRANTILKQLESD 795
Score = 128 (50.1 bits), Expect = 6.7e-50, Sum P(2) = 6.7e-50
Identities = 29/112 (25%), Positives = 58/112 (51%)
Query: 161 IDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRR 220
I S+ + +K+++LD +L++ + M G G S+ ++++ ++PMG R
Sbjct: 244 ITSLARIEEDKYVRLDKFTVRSLELIGS------MNDG----GSSLLNVIDRTISPMGAR 293
Query: 221 LLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKK 272
LL+ W + P+ D + +N RLN + +F + + E L + D+ I+ K
Sbjct: 294 LLKRWMVFPLKDEKPINDRLNVVEYFFRQPDFKELIEEQLHLIGDLERIISK 345
Score = 45 (20.9 bits), Expect = 3.5e-41, Sum P(2) = 3.5e-41
Identities = 37/167 (22%), Positives = 74/167 (44%)
Query: 169 LNKFLKLDATAHEAL-QIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFL 227
L+ ++ ++TA E L + F+T K+ G+ K G G + + +T + + +
Sbjct: 188 LDDWVFTESTAREKLLKHFET-KNLKGFGVEHLKNGIIASGAILQYLTMTQHTQIGH--I 244
Query: 228 RPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTA 287
+ +E + + F + S EL+ S+++ + +++ + SP W
Sbjct: 245 TSLARIEE-DKYVRLDKFTVRSLELIGSMNDG---GSSLLNVIDRTISPMGARLLKRWMV 300
Query: 288 F-LKS---ICSLLHVNKIF--EVGISESLREQLRLL-NFD-IVEKAA 326
F LK I L+V + F + E + EQL L+ + + I+ K A
Sbjct: 301 FPLKDEKPINDRLNVVEYFFRQPDFKELIEEQLHLIGDLERIISKVA 347
>UNIPROTKB|A3KGM9 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00790547
SMR:A3KGM9 Ensembl:ENST00000412975 UCSC:uc011iro.1 Uniprot:A3KGM9
Length = 401
Score = 518 (187.4 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 137/395 (34%), Positives = 214/395 (54%)
Query: 310 LREQLRLL--NFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELD 367
LR+ R L + + A + +L ++ L+ ++D S + T++ E+D
Sbjct: 20 LRDACRSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVL-PNIDPEID 78
Query: 368 ELRQIYEELPEFLEEVASLELVQLPHLCKEMFVP-C-IVYIHQIGYLMCI--FEEKLDDT 423
E ++ LP FL EVA EL L + +P C ++YI IG+L+ I ++ +
Sbjct: 79 EKKRRLMGLPSFLTEVARKELENL-----DSRIPSCSVIYIPLIGFLLSIPRLPSMVEAS 133
Query: 424 TLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICL 483
E + G +F F + +L Y + +T+ELD LLGD++ +I D E + L +
Sbjct: 134 DFE-INGLDFMFLSEE----KLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLA 188
Query: 484 FSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPL-LDIQNGRHVLQEMTVDTFI 542
+ L + ++ A+ LD L+LA A Y RP + + L + IQNGRH L E+ TF+
Sbjct: 189 RAAVLTRVLDLASRLDVLLALASAARDYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFV 248
Query: 543 PNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS---- 597
PN T D GR+ +ITGPN SGKSIY+KQV LI F++ +GSFVPA+ A +G D+
Sbjct: 249 PNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTR 308
Query: 598 ----KHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFV 653
+ ++ S+FMIDL+QV + AT+QSL L+DEFGKGT T DG+ LL + +++
Sbjct: 309 IHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWL 368
Query: 654 ----TCDVPPKVLVCTHLTELLNEGCLPKSERLKF 684
TC P + V T+ L+ LP+ +++
Sbjct: 369 ARGPTC---PHIFVATNFLSLVQLQLLPQGPLVQY 400
>TIGR_CMR|CHY_1397 [details] [associations]
symbol:CHY_1397 "DNA mismatch repair protein HexA"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0005524 "ATP binding" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006298 GO:GO:0030983 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
OMA:HYFELTV KO:K03555 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_360229.1 ProteinModelPortal:Q3ACA5
STRING:Q3ACA5 GeneID:3728668 KEGG:chy:CHY_1397 PATRIC:21275925
BioCyc:CHYD246194:GJCN-1396-MONOMER Uniprot:Q3ACA5
Length = 841
Score = 482 (174.7 bits), Expect = 2.9e-49, Sum P(2) = 2.9e-49
Identities = 117/303 (38%), Positives = 181/303 (59%)
Query: 449 TPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVA 508
T + + +NL+ K+ ++E + ++ S I + + L +A + A LD +SLA+ A
Sbjct: 487 TEELKHYENLILGASEKLANLEYELFCEIRSEILKYQEDLKRAASAVALLDFLISLAVAA 546
Query: 509 HQNNYMRPILTLEPLLDIQNGRHVLQEMTVD--TFIPNDTRIDN-DGRINIITGPNYSGK 565
+ ++ RP++T EP+L+I+NGRH + E +V F+PND +D + + +ITGPN +GK
Sbjct: 547 IEYDFTRPVITAEPVLEIKNGRHPVVEKSVGRANFVPNDLYLDTKENSLLLITGPNMAGK 606
Query: 566 SIYIKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMM 617
S Y++Q ALIV L+ IGSFVPA+ A VGL D + + QS+FM+++ + +
Sbjct: 607 STYMRQAALIVILAQIGSFVPAEYARVGLVDKILTRIGATDDLAKGQSTFMVEMIECNNI 666
Query: 618 LRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN-EGCL 676
LR ATS+SL LLDE G+GT T DGI + I Y + + + L TH EL EG +
Sbjct: 667 LRNATSRSLILLDEVGRGTSTYDGISIAEAIIEY-IQKKIKARTLFSTHYHELTGLEGEI 725
Query: 677 PKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAA 736
P +K +T VL E E++ FL+++VPG SYG++ A LAG+P EV++RA
Sbjct: 726 PG---VKNFT--VLVQEKG----EEVKFLHKVVPGKTDKSYGIYVAKLAGLPREVVERAY 776
Query: 737 YVL 739
+L
Sbjct: 777 EIL 779
Score = 103 (41.3 bits), Expect = 2.9e-49, Sum P(2) = 2.9e-49
Identities = 44/179 (24%), Positives = 79/179 (44%)
Query: 199 RAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHE 258
R S+ G+++ T MG R L+ +P+L+L+ + RL+A+ + EL +L E
Sbjct: 263 REDNSSSLLGIIDFTQTAMGARKLKEELTKPLLNLKAIADRLDAVEILVNDYELRENLRE 322
Query: 259 TLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHV-NKIFEVGISESLREQLRLL 317
LK + D+ + K + D +S+ + H+ N I V + +L
Sbjct: 323 NLKNLYDLERLSIKLVCGTI--NPKDLIKIKQSLPQIWHIKNSINHV-------KNKSVL 373
Query: 318 NFDIVEKAASCITTELAYVYELVI-GIIDVNRSKEKGYGTLVREGFCDELDELRQIYEE 375
+I + E+ VY L+ I+D K G +++ G+ +DE R+ EE
Sbjct: 374 FAEIYKNLP-----EMREVYNLIDKSIVDDPPVSPKD-GGIIKNGYNPTVDEYRKAREE 426
>UNIPROTKB|P61667 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000014 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00091 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_952872.1
ProteinModelPortal:P61667 GeneID:2688694 KEGG:gsu:GSU1822
PATRIC:22026501 BioCyc:GSUL243231:GH27-1750-MONOMER Uniprot:P61667
Length = 871
Score = 446 (162.1 bits), Expect = 6.7e-49, Sum P(2) = 6.7e-49
Identities = 122/407 (29%), Positives = 214/407 (52%)
Query: 355 GTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMC 414
G ++ +G+ ELDELR I E F+ + + E + + + Y GY +
Sbjct: 427 GGIIAQGYHSELDELRSISREGKGFIARLEAQEKARTGISSLK-----VRYNKVFGYYIE 481
Query: 415 IFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAIT 474
+ + L + ++ A ++ + TP+ +E + + +I+++E A+
Sbjct: 482 VTKSNLSAIPDDYIRRQTLANAER--------FITPELKEYEEKVLGAEDRIVELEYALF 533
Query: 475 RDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRH-VL 533
+D+ + + + + + A LD +LA VAH + Y+RP + + + GRH V+
Sbjct: 534 QDIRQRVAAQGERIARTADRLATLDVLAALADVAHDHRYVRPTVDEGDAIVVTGGRHPVV 593
Query: 534 QEMT-VDTFIPNDTRIDN-DGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAAT 591
+ + + F+ ND ++DN + ++ IITGPN +GKS +++QVALIV ++ GSFVPAD A+
Sbjct: 594 EALNRSERFVANDVQLDNGENQLVIITGPNMAGKSTFMRQVALIVLMAQTGSFVPADEAS 653
Query: 592 VGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIG 643
+G+ D S ++ QS+FM+++ + +LR AT +SL +LDE G+GT T DG+
Sbjct: 654 IGVVDRIFTRVGASDNLARGQSTFMVEMMETAAILRNATPRSLVVLDEIGRGTSTFDGVS 713
Query: 644 LLGGTINYFVTCD-VPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDI 702
+ Y + K L TH EL E + ++ R+K ++V E N + +
Sbjct: 714 IAWAVAEYLHDTERCAAKTLFATHYHEL-TELAVTRN-RVKNCNVAV--KEWN----DQV 765
Query: 703 VFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVE 749
+FL ++V G A SYG+ A LAG+P EVI+RA +L + ++ E
Sbjct: 766 IFLRKIVEGGASHSYGIQVARLAGLPQEVIERAKEILHNLEKGEYAE 812
Score = 141 (54.7 bits), Expect = 6.7e-49, Sum P(2) = 6.7e-49
Identities = 66/254 (25%), Positives = 113/254 (44%)
Query: 135 GLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSH 194
GL AV ++ L+Q + G+ I + +FL LD ++ L++ T
Sbjct: 234 GLRAVAA---VLHYLQQTQKGDVR-HISYLQAYRTQEFLVLDESSRRNLELNAT------ 283
Query: 195 MGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMA 254
IG K S+ G++++ VT MG R L+ W P++ +E +N RL+A+ + E
Sbjct: 284 --IGDGKRRGSLLGLLDRTVTAMGGRKLKQWINYPLVSIEKINERLDAVEELVADAEFRQ 341
Query: 255 SLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQL 314
+ L V D+ + + + S +A D A S+ L + + S +L +L
Sbjct: 342 GVRAALDGVYDLERLNGRISLASA--SAKDLVALRASLVRLPSLIALLTPAAS-TLLARL 398
Query: 315 RLLNFDIVEKAASCITTELAYVYELV-IGIIDVNRSKEKGYGTLVREGFCDELDELRQIY 373
R D ++ LA V EL+ GI+ + G ++ +G+ ELDELR I
Sbjct: 399 R----DGIDL--------LADVEELIGRGIVP-DPPFVLREGGIIAQGYHSELDELRSIS 445
Query: 374 EELPEFLEEVASLE 387
E F+ + + E
Sbjct: 446 REGKGFIARLEAQE 459
>TIGR_CMR|GSU_1822 [details] [associations]
symbol:GSU_1822 "DNA mismatch repair protein MutS"
species:243231 "Geobacter sulfurreducens PCA" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000014 InterPro:IPR000432
InterPro:IPR005748 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00091 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0003684 GO:GO:0006298 GO:GO:0004871
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_952872.1
ProteinModelPortal:P61667 GeneID:2688694 KEGG:gsu:GSU1822
PATRIC:22026501 BioCyc:GSUL243231:GH27-1750-MONOMER Uniprot:P61667
Length = 871
Score = 446 (162.1 bits), Expect = 6.7e-49, Sum P(2) = 6.7e-49
Identities = 122/407 (29%), Positives = 214/407 (52%)
Query: 355 GTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMC 414
G ++ +G+ ELDELR I E F+ + + E + + + Y GY +
Sbjct: 427 GGIIAQGYHSELDELRSISREGKGFIARLEAQEKARTGISSLK-----VRYNKVFGYYIE 481
Query: 415 IFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAIT 474
+ + L + ++ A ++ + TP+ +E + + +I+++E A+
Sbjct: 482 VTKSNLSAIPDDYIRRQTLANAER--------FITPELKEYEEKVLGAEDRIVELEYALF 533
Query: 475 RDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRH-VL 533
+D+ + + + + + A LD +LA VAH + Y+RP + + + GRH V+
Sbjct: 534 QDIRQRVAAQGERIARTADRLATLDVLAALADVAHDHRYVRPTVDEGDAIVVTGGRHPVV 593
Query: 534 QEMT-VDTFIPNDTRIDN-DGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAAT 591
+ + + F+ ND ++DN + ++ IITGPN +GKS +++QVALIV ++ GSFVPAD A+
Sbjct: 594 EALNRSERFVANDVQLDNGENQLVIITGPNMAGKSTFMRQVALIVLMAQTGSFVPADEAS 653
Query: 592 VGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIG 643
+G+ D S ++ QS+FM+++ + +LR AT +SL +LDE G+GT T DG+
Sbjct: 654 IGVVDRIFTRVGASDNLARGQSTFMVEMMETAAILRNATPRSLVVLDEIGRGTSTFDGVS 713
Query: 644 LLGGTINYFVTCD-VPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDI 702
+ Y + K L TH EL E + ++ R+K ++V E N + +
Sbjct: 714 IAWAVAEYLHDTERCAAKTLFATHYHEL-TELAVTRN-RVKNCNVAV--KEWN----DQV 765
Query: 703 VFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVE 749
+FL ++V G A SYG+ A LAG+P EVI+RA +L + ++ E
Sbjct: 766 IFLRKIVEGGASHSYGIQVARLAGLPQEVIERAKEILHNLEKGEYAE 812
Score = 141 (54.7 bits), Expect = 6.7e-49, Sum P(2) = 6.7e-49
Identities = 66/254 (25%), Positives = 113/254 (44%)
Query: 135 GLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSH 194
GL AV ++ L+Q + G+ I + +FL LD ++ L++ T
Sbjct: 234 GLRAVAA---VLHYLQQTQKGDVR-HISYLQAYRTQEFLVLDESSRRNLELNAT------ 283
Query: 195 MGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMA 254
IG K S+ G++++ VT MG R L+ W P++ +E +N RL+A+ + E
Sbjct: 284 --IGDGKRRGSLLGLLDRTVTAMGGRKLKQWINYPLVSIEKINERLDAVEELVADAEFRQ 341
Query: 255 SLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQL 314
+ L V D+ + + + S +A D A S+ L + + S +L +L
Sbjct: 342 GVRAALDGVYDLERLNGRISLASA--SAKDLVALRASLVRLPSLIALLTPAAS-TLLARL 398
Query: 315 RLLNFDIVEKAASCITTELAYVYELV-IGIIDVNRSKEKGYGTLVREGFCDELDELRQIY 373
R D ++ LA V EL+ GI+ + G ++ +G+ ELDELR I
Sbjct: 399 R----DGIDL--------LADVEELIGRGIVP-DPPFVLREGGIIAQGYHSELDELRSIS 445
Query: 374 EELPEFLEEVASLE 387
E F+ + + E
Sbjct: 446 REGKGFIARLEAQE 459
>UNIPROTKB|A9WFZ9 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:324602 "Chloroflexus aurantiacus J-10-fl" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:CP000909 GenomeReviews:CP000909_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:YP_001636542.1 ProteinModelPortal:A9WFZ9
STRING:A9WFZ9 GeneID:5827426 KEGG:cau:Caur_2954 PATRIC:21417221
ProtClustDB:CLSK2477234 BioCyc:CAUR324602:GIXU-3001-MONOMER
Uniprot:A9WFZ9
Length = 966
Score = 526 (190.2 bits), Expect = 7.9e-48, P = 7.9e-48
Identities = 167/562 (29%), Positives = 273/562 (48%)
Query: 198 GRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLH 257
GR S+ ++++ T MG RLLR W +P++ +E L R +A++ + +
Sbjct: 352 GRQGAKASLIAVLDRTCTAMGARLLRRWITQPLIVIEPLQVRQHAVARLVAETMARLEVR 411
Query: 258 ETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLR-- 315
L + D+ L + + T D T ++ L V + + + + L ++
Sbjct: 412 SALADLPDMERALNRIAQGITVATPRDMTQLRAALRKLPAVAQAVQALLPDLLAAEMPGE 471
Query: 316 -LLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGT---LVREGFCDELDELRQ 371
L FD+ + L ++G + R+ E+G ++R GF LD L +
Sbjct: 472 PPLVFDVCADVLDLLERALDDDPPALLGSSNYLRAAEEGGERPRRVIRPGFDQRLDALIR 531
Query: 372 IYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGF 431
EF++ + S E + + + V Y GY + I + D L +
Sbjct: 532 ASRHAQEFIDRLESKERERTG--IRSLKVG---YNQVFGYYIEI--SRAVDAKLIPAH-Y 583
Query: 432 EFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKA 491
E + ++ E Y T + + + LL D K++D+ER I + L + D L
Sbjct: 584 ERKQTLVNAER----YVTEELKYYEGLLSDARLKLVDLERDIFQRLCDELQPHLDRLRAT 639
Query: 492 VNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTV-DTFIPNDTRIDN 550
+ A +D +LA VA + Y++P L + +L I+ GRH + E T+ + FI ND +D
Sbjct: 640 IAAVARIDALAALAEVAVRGRYVQPRLRTDRVLRIKQGRHPVVERTLSEPFIGNDIDLDG 699
Query: 551 D-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMT 601
+ +I IITGPN +GKS +++QVALI ++ IGSFVPAD A +GL D +
Sbjct: 700 EQAQILIITGPNMAGKSTFLRQVALITLMAQIGSFVPADEAEIGLVDRIFTRIGAQDDIA 759
Query: 602 AEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPP-- 659
QS+FM+++ + +L Q+T +SL +LDE G+GT T DG+ + + Y D P
Sbjct: 760 TGQSTFMVEMTETAALLMQSTPRSLIILDEVGRGTSTYDGMAIARAVVEYIH--DHPRLG 817
Query: 660 -KVLVCTHLTELLN-EGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSY 717
+ L TH EL+ E LP R++ Y M+ + + +VFL+ L PG A SY
Sbjct: 818 CRTLFATHYHELIALERELP---RVRNYHMAAVERDGR------VVFLHELRPGGADRSY 868
Query: 718 GLHCALLAGVPAEVIKRAAYVL 739
G+H A LAG+P EVI+RA+ +L
Sbjct: 869 GIHVAELAGIPPEVIRRASALL 890
>UNIPROTKB|F1MLH1 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0019237 "centromeric
DNA binding" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0019237 GO:GO:0003697 GO:GO:0043570
GO:GO:0045910 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032302
GO:GO:0032181 GO:GO:0032357 GO:GO:0032142 GO:GO:0051096 OMA:KRTKSIY
GO:GO:0016447 GeneTree:ENSGT00550000074949 EMBL:DAAA02021015
EMBL:DAAA02021016 EMBL:DAAA02021017 EMBL:DAAA02021018
IPI:IPI00867495 Ensembl:ENSBTAT00000010107 Uniprot:F1MLH1
Length = 1120
Score = 458 (166.3 bits), Expect = 1.2e-46, Sum P(3) = 1.2e-46
Identities = 128/324 (39%), Positives = 183/324 (56%)
Query: 440 GETKRLF-YHTPKTRELDNLLGDIYHK-ILDMERAITRDLVSHICLFSDH---LLKAVNF 494
G TK + +H+P E L + + +LD + + ++ + F++H L KAV+
Sbjct: 760 GSTKAVSRFHSPFIVENYRHLNQLREQLVLDC----SAEWLAFLENFNEHYHTLCKAVHH 815
Query: 495 AAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTV---DTFIPNDTRIDND 551
A +DC LSLA VA Q +Y RP L E + I+NGRH + ++ + D F+PN T + D
Sbjct: 816 LATIDCILSLAKVAKQRDYCRPTLQEERKILIKNGRHPVIDVLLGEQDQFVPNSTDLSGD 875
Query: 552 G-RINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS--KHMTAE----- 603
R+ IITGPN GKS YIKQVALI ++ IGS+VPA+ AT+G+ D M A
Sbjct: 876 SERVMIITGPNMGGKSSYIKQVALITVMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYK 935
Query: 604 -QSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVL 662
QS+FM +L ++R+AT QSL +LDE G+GT T DGI + T+ +F+ DV L
Sbjct: 936 GQSTFMEELTDTAEIIRKATPQSLVILDELGRGTSTHDGIAIAYATLEHFIR-DVKSLTL 994
Query: 663 VCTHLTELLNEGCLPKS--ERLKFYTMSVLRPENNST-DV--ED-----IVFLYRLVPGH 712
TH + L KS +++ Y M L E+ S D ED ++FLY++ G
Sbjct: 995 FVTHYPPVCE---LEKSYSQQVGNYHMGFLVNEDESKQDAGEEDQVPDSVIFLYQITRGI 1051
Query: 713 ALLSYGLHCALLAGVPAEVIKRAA 736
A SYGL+ A LA VP E++K+AA
Sbjct: 1052 AARSYGLNVAKLADVPGEILKKAA 1075
Score = 103 (41.3 bits), Expect = 1.2e-46, Sum P(3) = 1.2e-46
Identities = 28/97 (28%), Positives = 48/97 (49%)
Query: 171 KFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPI 230
+F+ ++ T L+I Q G S+F +++ T GRR L+ W +P+
Sbjct: 521 EFMTINGTTLRNLEILQNQTDMKTKG--------SLFWVLDHTKTSFGRRKLKKWVTQPL 572
Query: 231 LDLENLNSRLNAISFFLCSEE-LMASLHETLKYVKDI 266
L L +N+RL+A+S L SE + + L+ + DI
Sbjct: 573 LKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDI 609
Score = 52 (23.4 bits), Expect = 1.2e-46, Sum P(3) = 1.2e-46
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 34 DSNSDFPLIDIVKYQAQPQIIYTSTKSEESFLSALKRSDGTTEAPTVKL 82
DS+S+ PL + Q QP ++ T+ + S AL+ SDG + K+
Sbjct: 50 DSDSEAPLASTLPPQLQPHVV---TEIDRSKKKALE-SDGPVKKKARKV 94
>MGI|MGI:109519 [details] [associations]
symbol:Msh3 "mutS homolog 3 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003677 "DNA binding" evidence=IGI] [GO:0003684
"damaged DNA binding" evidence=IGI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006298
"mismatch repair" evidence=ISO;IGI;IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IMP]
[GO:0019237 "centromeric DNA binding" evidence=IDA] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=ISO;IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=ISO;IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0051096 "positive regulation of helicase
activity" evidence=ISO] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 MGI:MGI:109519 GO:GO:0005524 GO:GO:0003684
GO:GO:0019237 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 KO:K08736
CTD:4437 HOVERGEN:HBG006400 OrthoDB:EOG434W57 GO:GO:0016447
EMBL:M80360 EMBL:L10319 EMBL:L10295 EMBL:L10296 EMBL:L10297
EMBL:L10298 EMBL:L10299 EMBL:L10300 EMBL:L10301 EMBL:L10304
EMBL:L10305 EMBL:L10306 EMBL:L10307 EMBL:L10308 EMBL:L10309
EMBL:L10310 EMBL:L10311 EMBL:L10312 EMBL:L10313 EMBL:L10314
EMBL:L10315 EMBL:L10316 EMBL:L10317 EMBL:L10318 EMBL:M24919
IPI:IPI00896729 PIR:A32495 RefSeq:NP_034959.2 UniGene:Mm.343101
ProteinModelPortal:P13705 SMR:P13705 STRING:P13705
PhosphoSite:P13705 PaxDb:P13705 PRIDE:P13705 GeneID:17686
KEGG:mmu:17686 InParanoid:P13705 ChiTaRS:MSH3 NextBio:292256
CleanEx:MM_MSH3 Genevestigator:P13705 GermOnline:ENSMUSG00000014850
Uniprot:P13705
Length = 1091
Score = 462 (167.7 bits), Expect = 1.6e-46, Sum P(2) = 1.6e-46
Identities = 115/277 (41%), Positives = 159/277 (57%)
Query: 484 FSDH---LLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTV-- 538
F +H L KAV+ A +DC SLA VA Q NY RP L E + I+NGRH + ++ +
Sbjct: 769 FGEHYHTLCKAVDHLATVDCIFSLAKVAKQGNYCRPTLQEEKKIIIKNGRHPMIDVLLGE 828
Query: 539 -DTFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS 597
D F+PN T + + R+ IITGPN GKS YIKQV L+ ++ IGS+VPA+ AT+G+ D
Sbjct: 829 QDQFVPNSTSLSDSERVMIITGPNMGGKSSYIKQVTLVTIMAQIGSYVPAEEATIGIVDG 888
Query: 598 --KHMTAE------QSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTI 649
M A +S+FM L ++R+A+ QSL +LDE G+GT T DGI + T+
Sbjct: 889 IFTRMGAADNIYKGRSTFMEQLTDTAEIIRRASPQSLVILDELGRGTSTHDGIAIAYATL 948
Query: 650 NYFVTCDVPPKVLVCTHLTELLN-EGCLPKSERLKFYTMSVLRPENNST----DVED--- 701
YF+ DV L TH + E C P E++ Y M L E+ S D+E
Sbjct: 949 EYFIR-DVKSLTLFVTHYPPVCELEKCYP--EQVGNYHMGFLVNEDESKQDSGDMEQMPD 1005
Query: 702 -IVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAY 737
+ FLY++ G A SYGL+ A LA VP EV+++AA+
Sbjct: 1006 SVTFLYQITRGIAARSYGLNVAKLADVPREVLQKAAH 1042
Score = 106 (42.4 bits), Expect = 1.6e-46, Sum P(2) = 1.6e-46
Identities = 34/129 (26%), Positives = 63/129 (48%)
Query: 171 KFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPI 230
+F++++ T L++ Q G S+ +++ T GRR L+NW +P+
Sbjct: 491 EFMRINGTTLRNLEMVQNQTDMKTKG--------SLLWVLDHTKTSFGRRKLKNWVTQPL 542
Query: 231 LDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIY----TASDWT 286
L L +N+RL+A+S L SE + E L ++ +P + + S IY + ++
Sbjct: 543 LKLREINARLDAVSDVLHSESSVFEQIENL--LRKLPDVERGLCS---IYHKKCSTQEFF 597
Query: 287 AFLKSICSL 295
+KS+C L
Sbjct: 598 LIVKSLCQL 606
Score = 45 (20.9 bits), Expect = 4.0e-40, Sum P(2) = 4.0e-40
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 30 EVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSEESFLSALK 69
E+++D SDFPLI K + Q ++I++ + F LK
Sbjct: 656 ELFKDL-SDFPLIKKRKNEIQ-EVIHSIQMRLQEFRKILK 693
Score = 44 (20.5 bits), Expect = 5.1e-40, Sum P(2) = 5.1e-40
Identities = 7/9 (77%), Positives = 9/9 (100%)
Query: 411 YLMCIFEEK 419
YL+CI+EEK
Sbjct: 325 YLLCIYEEK 333
>UNIPROTKB|F1P9S9 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:KRTKSIY
GeneTree:ENSGT00550000074949 EMBL:AAEX03002106
Ensembl:ENSCAFT00000013983 Uniprot:F1P9S9
Length = 1058
Score = 465 (168.7 bits), Expect = 2.0e-46, Sum P(2) = 2.0e-46
Identities = 129/320 (40%), Positives = 176/320 (55%)
Query: 440 GETKRLF-YHTPKTRELDNLLGDIYHK-ILDMERAITRDLVSHICLFSDHLLKAVNFAAE 497
G TK + +H+P E L + + +LD A D + + L KAV+ A
Sbjct: 695 GSTKAVSRFHSPFIVENYRHLNQLREQLVLDCS-AEWLDFLENFSAHYHSLCKAVHHLAT 753
Query: 498 LDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTV---DTFIPNDTRIDNDG-R 553
+DC SLA VA Q +Y RP L E + I+NGRH + ++ + D ++PN T + D R
Sbjct: 754 VDCIFSLAKVAKQGDYCRPSLQEERKIVIKNGRHPVIDVLLGEQDQYVPNSTNLSGDSER 813
Query: 554 INIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS--KHMTAE------QS 605
+ IITGPN GKS YIKQVALI ++ IGS+VPA+ AT+G+ D M A QS
Sbjct: 814 VMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGQS 873
Query: 606 SFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCT 665
+FM +L ++RQATSQSL +LDE G+GT T DGI + T+ +F+ DV L T
Sbjct: 874 TFMEELMDTAEIIRQATSQSLVILDELGRGTSTHDGIAIAYATLEHFIR-DVKSLTLFVT 932
Query: 666 HLTELLNEGCLPKS--ERLKFYTMSVLRPEN-NSTD-----VEDIV-FLYRLVPGHALLS 716
H + L KS + + Y M L E+ N D V D V FLY++ G A S
Sbjct: 933 HYPPVCE---LEKSYLQEVGNYHMGFLVNEDENKEDPGEEPVPDFVTFLYQITRGIAARS 989
Query: 717 YGLHCALLAGVPAEVIKRAA 736
YGL+ A LA VP E++K+AA
Sbjct: 990 YGLNVAKLADVPGEILKKAA 1009
Score = 101 (40.6 bits), Expect = 2.0e-46, Sum P(2) = 2.0e-46
Identities = 52/221 (23%), Positives = 99/221 (44%)
Query: 171 KFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPI 230
+F+ ++ T L+I Q G S+ +++ T GRR L+ W ++P+
Sbjct: 456 EFMTINGTTLRNLEILQNQTDMKTKG--------SLLWVLDHTKTSFGRRKLKKWVVQPL 507
Query: 231 LDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTA-FL 289
L L +N+RL+A+S L SE + E +++ +P I + S IY T F
Sbjct: 508 LKLREINARLDAVSEVLHSESSVFGQIEN--HLRKLPDIERGLCS---IYHKKCSTQEFF 562
Query: 290 KSICSLLHVNKIFEVGI-SESLREQLRLLNFDIVE--KAASCITTELAYVYELVIGIIDV 346
+ +L H+ F+ I + + Q LL I+E + S + L + E I D
Sbjct: 563 LIVKTLYHLKSEFQALIPAVNSHVQSDLLRTFILEIPELLSPVEHYLRILNEQAAKIGDK 622
Query: 347 NRS-KEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASL 386
K+ L+++ DE++++ +++ L+E+ +
Sbjct: 623 TELFKDLTDFPLIKK----RKDEIQEVTDKIQMHLQEIRKI 659
>UNIPROTKB|F1LQM8 [details] [associations]
symbol:Msh3 "Protein Msh3" species:10116 "Rattus
norvegicus" [GO:0003697 "single-stranded DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032357 "oxidized purine DNA binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045910
"negative regulation of DNA recombination" evidence=IEA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 RGD:1563954 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08736 CTD:4437
GeneTree:ENSGT00550000074949 IPI:IPI00196502 RefSeq:NP_001178886.1
UniGene:Rn.162551 Ensembl:ENSRNOT00000018449 GeneID:499505
KEGG:rno:499505 NextBio:703076 ArrayExpress:F1LQM8 Uniprot:F1LQM8
Length = 1105
Score = 457 (165.9 bits), Expect = 6.2e-46, Sum P(2) = 6.2e-46
Identities = 124/324 (38%), Positives = 182/324 (56%)
Query: 440 GETKRLF-YHTPKTRELDNLLGDIYHK-ILDMERAITRDLVSHICLFSDH---LLKAVNF 494
G TK + +H+P E L + + +LD A D + + F +H L KAV+
Sbjct: 730 GSTKAVSRFHSPFVVENYRRLNQLREQLVLDCN-AEWLDFLEN---FGEHYHTLCKAVDH 785
Query: 495 AAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTV---DTFIPNDTRIDND 551
A +DC SLA VA Q +Y RP L E + I+NGRH + ++ + D F+PN T + D
Sbjct: 786 LATVDCIFSLAKVAKQGSYCRPTLQEEKKIIIKNGRHPMIDVLLGEQDQFVPNSTNLSQD 845
Query: 552 G-RINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD---SKHMTAE---- 603
R+ IITGPN GKS YIKQVAL+V ++ IGS+VPA+ AT+G+ D ++ A+
Sbjct: 846 SERVMIITGPNMGGKSSYIKQVALVVIMAQIGSYVPAEEATIGIVDGIFTRRGAADNIYK 905
Query: 604 -QSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVL 662
+S+FM +L ++++AT +SL +LDE G+GT T DGI + T+ YF+ DV L
Sbjct: 906 GRSTFMEELTDTAEIIQKATQRSLVILDELGRGTSTHDGIAIAYATLEYFIR-DVKSLTL 964
Query: 663 VCTHLTELLN-EGCLPKSERLKFYTMSVLRPENNST----DVED----IVFLYRLVPGHA 713
TH + E P E++ Y M L E+ S D+E + FLY++ G A
Sbjct: 965 FVTHYPPVCELEKRYP--EQVGNYHMGFLVNEDGSKQDSGDMEQMPDSVTFLYQITRGIA 1022
Query: 714 LLSYGLHCALLAGVPAEVIKRAAY 737
SYGL+ A LA VP E++++AA+
Sbjct: 1023 ARSYGLNVAKLADVPREILQKAAH 1046
Score = 106 (42.4 bits), Expect = 6.2e-46, Sum P(2) = 6.2e-46
Identities = 56/240 (23%), Positives = 107/240 (44%)
Query: 171 KFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPI 230
+F++++ T L+I Q G S+ +++ T GRR L+ W +P+
Sbjct: 491 EFMRINGTTLRNLEILQNQTDMKTRG--------SLLWVLDHTKTSFGRRKLKKWVTQPL 542
Query: 231 LDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIY----TASDWT 286
L L ++N+RL+AIS L SE + E L ++ +P + + S IY + ++
Sbjct: 543 LKLRDINARLDAISDVLHSESSVFEQIENL--LRKLPDVERGLCS---IYHKKCSTQEFF 597
Query: 287 AFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDV 346
+K++C L + ++ ++ L L ++E EL E + +++
Sbjct: 598 LIVKNLCQLKSELQALMPAVNSHVQSDL--LRARVLE------VPELLSPVEPYLKVLNE 649
Query: 347 NRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYI 406
+K G T E F D L + I + E E + S+++ L L K + +P + Y+
Sbjct: 650 QAAKA-GDKT---ELFKD-LSDFPLIKKRKNEIQEVIHSIQM-HLQELRKILKLPSLQYV 703
Score = 44 (20.5 bits), Expect = 2.0e-39, Sum P(2) = 2.0e-39
Identities = 7/9 (77%), Positives = 9/9 (100%)
Query: 411 YLMCIFEEK 419
YL+CI+EEK
Sbjct: 325 YLLCIYEEK 333
Score = 39 (18.8 bits), Expect = 6.7e-39, Sum P(2) = 6.7e-39
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 30 EVWEDSNSDFPLIDIVKYQAQPQIIYT 56
E+++D SDFPLI K + Q ++I++
Sbjct: 659 ELFKDL-SDFPLIKKRKNEIQ-EVIHS 683
>UNIPROTKB|P20585 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein Msh3" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0016447 "somatic recombination of immunoglobulin gene segments"
evidence=IBA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0019899 "enzyme binding" evidence=IPI] [GO:0032302 "MutSbeta
complex" evidence=IDA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IMP] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=IMP]
[GO:0030983 "mismatched DNA binding" evidence=IDA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IDA]
[GO:0032142 "single guanine insertion binding" evidence=IDA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0032357 "oxidized purine DNA binding" evidence=IDA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0051096 "positive regulation of helicase
activity" evidence=IDA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0019237 EMBL:AC008434 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0045910 MIM:608089
GO:GO:0008094 UniGene:Hs.648635 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GO:GO:0051096 PDB:3THW PDB:3THX PDB:3THY PDB:3THZ PDBsum:3THW
PDBsum:3THX PDBsum:3THY PDBsum:3THZ HOGENOM:HOG000029776 KO:K08736
EMBL:J04810 EMBL:U61981 EMBL:D61419 EMBL:AY275681 EMBL:AC010270
EMBL:AC022493 EMBL:BC011817 EMBL:BC130436 IPI:IPI00329605
PIR:A33507 RefSeq:NP_002430.3 UniGene:Hs.280987
ProteinModelPortal:P20585 SMR:P20585 DIP:DIP-35127N IntAct:P20585
MINT:MINT-192778 STRING:P20585 PhosphoSite:P20585 DMDM:229462953
PaxDb:P20585 PRIDE:P20585 Ensembl:ENST00000265081 GeneID:4437
KEGG:hsa:4437 UCSC:uc003kgz.3 CTD:4437 GeneCards:GC05P079986
H-InvDB:HIX0032037 HGNC:HGNC:7326 HPA:HPA036080 HPA:HPA036081
MIM:600887 neXtProt:NX_P20585 PharmGKB:PA31134 HOVERGEN:HBG006400
InParanoid:P20585 OMA:HYFELTV OrthoDB:EOG434W57 GenomeRNAi:4437
NextBio:17293 ArrayExpress:P20585 Bgee:P20585 CleanEx:HS_MSH3
Genevestigator:P20585 GermOnline:ENSG00000113318 GO:GO:0016447
Uniprot:P20585
Length = 1137
Score = 461 (167.3 bits), Expect = 1.3e-45, Sum P(2) = 1.3e-45
Identities = 130/325 (40%), Positives = 180/325 (55%)
Query: 440 GETKRLF-YHTPKTRELDNLLGDIYHK-ILDMERAITRDLVSHICLFSDH---LLKAVNF 494
G TK + +H+P E L + + +LD A D + FS+H L KAV+
Sbjct: 772 GSTKAVSRFHSPFIVENYRHLNQLREQLVLDCS-AEWLDFLEK---FSEHYHSLCKAVHH 827
Query: 495 AAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTV---DTFIPNDTRIDND 551
A +DC SLA VA Q +Y RP + E + I+NGRH + ++ + D ++PN+T + D
Sbjct: 828 LATVDCIFSLAKVAKQGDYCRPTVQEERKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSED 887
Query: 552 G-RINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS--KHMTAE----- 603
R+ IITGPN GKS YIKQVALI ++ IGS+VPA+ AT+G+ D M A
Sbjct: 888 SERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYK 947
Query: 604 -QSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVL 662
QS+FM +L ++R+ATSQSL +LDE G+GT T DGI + T+ YF+ DV L
Sbjct: 948 GQSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIR-DVKSLTL 1006
Query: 663 VCTHLTELLNEGCLPK--SERLKFYTMSVLRPENNST-------DVEDIV-FLYRLVPGH 712
TH + L K S ++ Y M L E+ S V D V FLY++ G
Sbjct: 1007 FVTHYPPVCE---LEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGI 1063
Query: 713 ALLSYGLHCALLAGVPAEVIKRAAY 737
A SYGL+ A LA VP E++K+AA+
Sbjct: 1064 AARSYGLNVAKLADVPGEILKKAAH 1088
Score = 99 (39.9 bits), Expect = 1.3e-45, Sum P(2) = 1.3e-45
Identities = 52/221 (23%), Positives = 97/221 (43%)
Query: 171 KFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPI 230
+F+ ++ T L+I Q G S+ +++ T GRR L+ W +P+
Sbjct: 533 EFMTINGTTLRNLEILQNQTDMKTKG--------SLLWVLDHTKTSFGRRKLKKWVTQPL 584
Query: 231 LDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTA-FL 289
L L +N+RL+A+S L SE + E +++ +P I + S IY T F
Sbjct: 585 LKLREINARLDAVSEVLHSESSVFGQIEN--HLRKLPDIERGLCS---IYHKKCSTQEFF 639
Query: 290 KSICSLLHVNKIFEVGI-SESLREQLRLLNFDIVE--KAASCITTELAYVYELVIGIIDV 346
+ +L H+ F+ I + + Q LL I+E + S + L + E + D
Sbjct: 640 LIVKTLYHLKSEFQAIIPAVNSHIQSDLLRTVILEIPELLSPVEHYLKILNEQAAKVGDK 699
Query: 347 NRS-KEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASL 386
K+ L+++ DE++ + +E+ L+E+ +
Sbjct: 700 TELFKDLSDFPLIKK----RKDEIQGVIDEIRMHLQEIRKI 736
>WB|WBGene00003421 [details] [associations]
symbol:msh-5 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0051026
"chiasma assembly" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0045143 "homologous chromosome
segregation" evidence=IMP] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
KO:K08741 EMBL:AF271389 EMBL:Z73896 EMBL:AF070070 PIR:T20659
PIR:T20660 PIR:T43201 RefSeq:NP_502531.1 UniGene:Cel.19456
ProteinModelPortal:Q19272 STRING:Q19272 EnsemblMetazoa:F09E8.3
GeneID:178268 KEGG:cel:CELE_F09E8.3 UCSC:F09E8.3 CTD:178268
WormBase:F09E8.3 GeneTree:ENSGT00550000074977 HOGENOM:HOG000016447
InParanoid:Q19272 OMA:GRACRIY NextBio:900436 GermOnline:F09E8.3
Uniprot:Q19272
Length = 1369
Score = 507 (183.5 bits), Expect = 1.5e-45, Sum P(2) = 1.5e-45
Identities = 153/501 (30%), Positives = 245/501 (48%)
Query: 288 FLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVI---GII 344
F L+H + F V +L E L ++ + K + L V E+ + II
Sbjct: 376 FQSGTAQLIHW-ECF-VSTVNALVEILNIIRQTPISKEFPVESDLLREVSEIAVIAGSII 433
Query: 345 DVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIV 404
+ SK +G T V G +ELDE+R YE +P L +A E +L L V C V
Sbjct: 434 NFAESKIQGRVT-VMNGIDEELDEIRDTYENMPMVLTAIAKQEEARLG-LPPYSNVAC-V 490
Query: 405 YIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYH 464
YI +G+++ + D +E +S + L T LD+ GDI
Sbjct: 491 YIPLVGFVLSVPR----DYGVESQPDMTLLYSTHED----LRVRNATTSRLDDEFGDILM 542
Query: 465 KILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLL 524
+++D + AI L + + ++K ++ A+ +D +S L+A QN + P L EP++
Sbjct: 543 RLIDSQTAIILTLKTRVMKKKRSIIKLLSIASRIDVLISFGLIAAQNGWNCPALVDEPVI 602
Query: 525 DIQNGRHVLQEMTVD-TFIPNDTRIDNDG-RINIITGPNYSGKSIYIKQVALIVFLSHIG 582
+ H + + V +F+PN DG + +IITGPN GKS+Y+K + ++VFLSHIG
Sbjct: 603 EAVELYHPISVLVVKKSFVPNQVSSGRDGIKASIITGPNACGKSVYMKSIGIMVFLSHIG 662
Query: 583 SFVPADAATVGLTD---SKHMTAEQ-----SSFMIDLHQVGMMLRQATSQSLCLLDEFGK 634
SFVPA A +G+ D ++ T + S+F D+ QV + LR+AT SL ++DEFGK
Sbjct: 663 SFVPARHAKIGIVDRIVTRMFTVDSVLDGMSTFAKDVEQVALALRKATGNSLVIIDEFGK 722
Query: 635 GTLTEDGIGLLGGTINYFVT--CDVPPKVLVCTHLTELLNEGCLPKSERLK-FYTMSVLR 691
GT+TE G+ LL + Y++ D P + + +H L N +P + F T +VLR
Sbjct: 723 GTMTEVGLSLLASVMTYWMNRGADRCPHIFLSSHFHALPNY--IPLETNIATFLTFTVLR 780
Query: 692 PENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERW 751
I +L+R+ PG S+ L A G+P VI RA + +A + ++
Sbjct: 781 EAGGK-----IKYLFRMTPGLVDCSFALSVAKEEGIPPPVIGRACRIYKALKAGTLLKEI 835
Query: 752 SHENISAQDQQYKNAVEKMLA 772
E + ++Q ++ +LA
Sbjct: 836 KAEVSNDNEKQLVEDMDVVLA 856
Score = 225 (84.3 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 89/350 (25%), Positives = 160/350 (45%)
Query: 72 DGTTEAPTVKLVK--SSIFSYEQAWHRLIYLRVTGMDDGLSIKERICYLNSMMDMGSEVQ 129
D E KL K ++ F +A RL + D ++ +++ + D+ +
Sbjct: 179 DDDDEGLPAKLNKLPNNFFRMSRAIERLKAM-AGSHDSSMTEEDKYIIIKMRFDIEAVNM 237
Query: 130 VRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQTD 189
+R+ G LL L+ R+ T + + + I S+ +L +++D +AL I +
Sbjct: 238 IRSFGALLLFLDETRMGVT---DDPLSVTSPIKSIKTFTLGNLVEIDFNTIQALDILPKE 294
Query: 190 -KHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFL- 247
++ G GR S++ +M+KC + +G++ LR WF P D ++L SR + +F
Sbjct: 295 TENKKTFGQGR-----SLYQLMDKCRSTVGKKCLRKWFRNPTTDRDDLVSRQKCVHYFKQ 349
Query: 248 -CSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHV-NKIFEVG 305
+ E+ A L L VK + + +KF S + W F+ ++ +L+ + N I +
Sbjct: 350 DWNAEVTAKLSSILGRVKALNSVFQKFQSGTA--QLIHWECFVSTVNALVEILNIIRQTP 407
Query: 306 ISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDE 365
IS+ + LL E++ + + II+ SK +G T V G +E
Sbjct: 408 ISKEFPVESDLLR-------------EVSEIAVIAGSIINFAESKIQGRVT-VMNGIDEE 453
Query: 366 LDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCI 415
LDE+R YE +P L +A E +L L V C VYI +G+++ +
Sbjct: 454 LDEIRDTYENMPMVLTAIAKQEEARLG-LPPYSNVAC-VYIPLVGFVLSV 501
Score = 51 (23.0 bits), Expect = 1.5e-45, Sum P(2) = 1.5e-45
Identities = 23/78 (29%), Positives = 35/78 (44%)
Query: 14 VGVSYYDSSIRQLHVL-EVWEDSNSDF--PLIDIVKYQAQPQIIYTSTKSEESFLSALKR 70
+G +YY+ S + L ++ ++ ED F LID VK P +I + + F+ L
Sbjct: 75 LGAAYYEQSSQLLKIMNDISEDLEFRFLKRLIDDVK----PTLIIANRSQDLEFIKFLTT 130
Query: 71 ---------SDGTTEAPT 79
DGTTE T
Sbjct: 131 RYDPQEKIYEDGTTEEGT 148
>UNIPROTKB|Q19272 [details] [associations]
symbol:msh-5 "MutS protein homolog 5" species:6239
"Caenorhabditis elegans" [GO:0005634 "nucleus" evidence=IMP]
[GO:0007131 "reciprocal meiotic recombination" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0032300 "mismatch
repair complex" evidence=IRD] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0006298 GO:GO:0030983 GO:GO:0007131 GO:GO:0008094
GO:GO:0051026 GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249
SUPFAM:SSF48334 KO:K08741 EMBL:AF271389 EMBL:Z73896 EMBL:AF070070
PIR:T20659 PIR:T20660 PIR:T43201 RefSeq:NP_502531.1
UniGene:Cel.19456 ProteinModelPortal:Q19272 STRING:Q19272
EnsemblMetazoa:F09E8.3 GeneID:178268 KEGG:cel:CELE_F09E8.3
UCSC:F09E8.3 CTD:178268 WormBase:F09E8.3
GeneTree:ENSGT00550000074977 HOGENOM:HOG000016447 InParanoid:Q19272
OMA:GRACRIY NextBio:900436 GermOnline:F09E8.3 Uniprot:Q19272
Length = 1369
Score = 507 (183.5 bits), Expect = 1.5e-45, Sum P(2) = 1.5e-45
Identities = 153/501 (30%), Positives = 245/501 (48%)
Query: 288 FLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVI---GII 344
F L+H + F V +L E L ++ + K + L V E+ + II
Sbjct: 376 FQSGTAQLIHW-ECF-VSTVNALVEILNIIRQTPISKEFPVESDLLREVSEIAVIAGSII 433
Query: 345 DVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIV 404
+ SK +G T V G +ELDE+R YE +P L +A E +L L V C V
Sbjct: 434 NFAESKIQGRVT-VMNGIDEELDEIRDTYENMPMVLTAIAKQEEARLG-LPPYSNVAC-V 490
Query: 405 YIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYH 464
YI +G+++ + D +E +S + L T LD+ GDI
Sbjct: 491 YIPLVGFVLSVPR----DYGVESQPDMTLLYSTHED----LRVRNATTSRLDDEFGDILM 542
Query: 465 KILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLL 524
+++D + AI L + + ++K ++ A+ +D +S L+A QN + P L EP++
Sbjct: 543 RLIDSQTAIILTLKTRVMKKKRSIIKLLSIASRIDVLISFGLIAAQNGWNCPALVDEPVI 602
Query: 525 DIQNGRHVLQEMTVD-TFIPNDTRIDNDG-RINIITGPNYSGKSIYIKQVALIVFLSHIG 582
+ H + + V +F+PN DG + +IITGPN GKS+Y+K + ++VFLSHIG
Sbjct: 603 EAVELYHPISVLVVKKSFVPNQVSSGRDGIKASIITGPNACGKSVYMKSIGIMVFLSHIG 662
Query: 583 SFVPADAATVGLTD---SKHMTAEQ-----SSFMIDLHQVGMMLRQATSQSLCLLDEFGK 634
SFVPA A +G+ D ++ T + S+F D+ QV + LR+AT SL ++DEFGK
Sbjct: 663 SFVPARHAKIGIVDRIVTRMFTVDSVLDGMSTFAKDVEQVALALRKATGNSLVIIDEFGK 722
Query: 635 GTLTEDGIGLLGGTINYFVT--CDVPPKVLVCTHLTELLNEGCLPKSERLK-FYTMSVLR 691
GT+TE G+ LL + Y++ D P + + +H L N +P + F T +VLR
Sbjct: 723 GTMTEVGLSLLASVMTYWMNRGADRCPHIFLSSHFHALPNY--IPLETNIATFLTFTVLR 780
Query: 692 PENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERW 751
I +L+R+ PG S+ L A G+P VI RA + +A + ++
Sbjct: 781 EAGGK-----IKYLFRMTPGLVDCSFALSVAKEEGIPPPVIGRACRIYKALKAGTLLKEI 835
Query: 752 SHENISAQDQQYKNAVEKMLA 772
E + ++Q ++ +LA
Sbjct: 836 KAEVSNDNEKQLVEDMDVVLA 856
Score = 225 (84.3 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 89/350 (25%), Positives = 160/350 (45%)
Query: 72 DGTTEAPTVKLVK--SSIFSYEQAWHRLIYLRVTGMDDGLSIKERICYLNSMMDMGSEVQ 129
D E KL K ++ F +A RL + D ++ +++ + D+ +
Sbjct: 179 DDDDEGLPAKLNKLPNNFFRMSRAIERLKAM-AGSHDSSMTEEDKYIIIKMRFDIEAVNM 237
Query: 130 VRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQTD 189
+R+ G LL L+ R+ T + + + I S+ +L +++D +AL I +
Sbjct: 238 IRSFGALLLFLDETRMGVT---DDPLSVTSPIKSIKTFTLGNLVEIDFNTIQALDILPKE 294
Query: 190 -KHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFL- 247
++ G GR S++ +M+KC + +G++ LR WF P D ++L SR + +F
Sbjct: 295 TENKKTFGQGR-----SLYQLMDKCRSTVGKKCLRKWFRNPTTDRDDLVSRQKCVHYFKQ 349
Query: 248 -CSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHV-NKIFEVG 305
+ E+ A L L VK + + +KF S + W F+ ++ +L+ + N I +
Sbjct: 350 DWNAEVTAKLSSILGRVKALNSVFQKFQSGTA--QLIHWECFVSTVNALVEILNIIRQTP 407
Query: 306 ISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDE 365
IS+ + LL E++ + + II+ SK +G T V G +E
Sbjct: 408 ISKEFPVESDLLR-------------EVSEIAVIAGSIINFAESKIQGRVT-VMNGIDEE 453
Query: 366 LDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCI 415
LDE+R YE +P L +A E +L L V C VYI +G+++ +
Sbjct: 454 LDEIRDTYENMPMVLTAIAKQEEARLG-LPPYSNVAC-VYIPLVGFVLSV 501
Score = 51 (23.0 bits), Expect = 1.5e-45, Sum P(2) = 1.5e-45
Identities = 23/78 (29%), Positives = 35/78 (44%)
Query: 14 VGVSYYDSSIRQLHVL-EVWEDSNSDF--PLIDIVKYQAQPQIIYTSTKSEESFLSALKR 70
+G +YY+ S + L ++ ++ ED F LID VK P +I + + F+ L
Sbjct: 75 LGAAYYEQSSQLLKIMNDISEDLEFRFLKRLIDDVK----PTLIIANRSQDLEFIKFLTT 130
Query: 71 ---------SDGTTEAPT 79
DGTTE T
Sbjct: 131 RYDPQEKIYEDGTTEEGT 148
>UNIPROTKB|P74926 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:243274 "Thermotoga maritima MSB8" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:AE000512 GenomeReviews:AE000512_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 EMBL:U71155 PIR:C72219 RefSeq:NP_229518.1
ProteinModelPortal:P74926 GeneID:897879 KEGG:tma:TM1719
PATRIC:23938414 Uniprot:P74926
Length = 793
Score = 427 (155.4 bits), Expect = 1.5e-44, Sum P(2) = 1.5e-44
Identities = 123/416 (29%), Positives = 209/416 (50%)
Query: 353 GYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYL 412
G G +++ GF ELDE R + E E L+E E + +++ V Y GY
Sbjct: 397 GEGKVIKRGFSSELDEYRDLLEHAEERLKEFEEKERERTG--IQKLRVG---YNQVFGYY 451
Query: 413 MCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERA 472
+ + + LD +E + ++ E + TP+ +E + + +I ++E+
Sbjct: 452 IEVTKANLDKIP----DDYERKQTLVNSER----FITPELKEFETKIMAAKERIEELEKE 503
Query: 473 ITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHV 532
+ + + + + LL+ A++D +LA A NY +P+ + E L+I+ GRH
Sbjct: 504 LFKSVCEEVKKHKEVLLEISEDLAKIDALSTLAYDAIMYNYTKPVFS-EDRLEIKGGRHP 562
Query: 533 LQEMTVDTFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATV 592
+ E F+ ND +DN+ R +ITGPN SGKS +I+QV LI ++ IGSFVPA A +
Sbjct: 563 VVERFTQNFVENDIYMDNEKRFVVITGPNMSGKSTFIRQVGLISLMAQIGSFVPAQKAIL 622
Query: 593 GLTDS--KHMTAE------QSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGL 644
+ D M A +S+F+++++++ ++L ++T++SL LLDE G+GT T+DG+ +
Sbjct: 623 PVFDRIFTRMGARDDLAGGRSTFLVEMNEMALILLKSTNKSLVLLDEVGRGTSTQDGVSI 682
Query: 645 LGGTINYFVTCDVPPKVLVCTHLTELLN-EGCLPKSERLKFYTMSVLRPENNSTDVEDIV 703
+ KVL TH TEL E P+ + ++L E ++++
Sbjct: 683 AWAISEELIKRGC--KVLFATHFTELTELEKHFPQVQN-----KTILVKEEG----KNVI 731
Query: 704 FLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERWSHENISAQ 759
F +++V G A SYG+ A +AG+P VI RA +LE N + S Q
Sbjct: 732 FTHKVVDGVADRSYGIEVAKIAGIPDRVINRAYEILERNFKNNTKKNGKSNRFSQQ 787
Score = 118 (46.6 bits), Expect = 1.5e-44, Sum P(2) = 1.5e-44
Identities = 29/118 (24%), Positives = 56/118 (47%)
Query: 203 GFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKY 262
G ++F ++N TPMG RLL+ W L P++D + + RL A+ + + + L
Sbjct: 268 GKNLFDVLNNTETPMGARLLKKWILHPLVDRKQIEERLKAVERLVNDRVSLEEMRNLLSN 327
Query: 263 VKDIPHILKK--FNS--PSFIYTASDWTAFLKSICSLLHVNKIFE-VGISESLREQLR 315
V+D+ I+ + +N P + + + + +L +F+ + E L + LR
Sbjct: 328 VRDVERIVSRVEYNRSVPRDLVALRETLEIIPKLNEVLSTFGVFKKLAFPEGLVDLLR 385
Score = 46 (21.3 bits), Expect = 5.3e-37, Sum P(2) = 5.3e-37
Identities = 34/155 (21%), Positives = 63/155 (40%)
Query: 234 ENLNSRLN-AISFFLCSEELMASLHE--------TLK--YVKDIPHILKKFNSPSFIYTA 282
E L+ N +IS +C E L +SL E T+ Y D+ + K +N +
Sbjct: 152 ETLDLLKNYSISQIICPEHLKSSLKERFPGVYTETISEWYFSDLEEVEKAYNLKDIHHFE 211
Query: 283 SDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIG 342
A LK++ +L+ K + +L+ L + D + ++ + +
Sbjct: 212 LSPLA-LKALAALIKYVKYTMIAEDLNLKPPLLISQRDYMILDSATVENLSLIPGDRGKN 270
Query: 343 IIDVNRSKEKGYGT-LVREGFCDELDELRQIYEEL 376
+ DV + E G L+++ L + +QI E L
Sbjct: 271 LFDVLNNTETPMGARLLKKWILHPLVDRKQIEERL 305
>UNIPROTKB|Q3KKQ0 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:315277 "Chlamydia trachomatis A/HAR-13" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:CP000051 GenomeReviews:CP000051_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:YP_328620.1
ProteinModelPortal:Q3KKQ0 STRING:Q3KKQ0 GeneID:3687872
KEGG:cta:CTA_0862 PATRIC:32023672
BioCyc:CTRA315277:GI4C-873-MONOMER Uniprot:Q3KKQ0
Length = 820
Score = 402 (146.6 bits), Expect = 1.6e-44, Sum P(3) = 1.6e-44
Identities = 100/303 (33%), Positives = 164/303 (54%)
Query: 452 TRELDNLLGDIYH---KILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVA 508
T+EL +++ K+ +E + ++L +I D +LK A+LD +SLA +A
Sbjct: 505 TQELQQFQDEVFSVEDKLQTLETKLFKELCFYIVEHRDLILKLSTAVADLDYVVSLAELA 564
Query: 509 HQNNYMRPILTLEPLLDIQNGRHVLQEMTVD--TFIPNDTRIDN-DGRINIITGPNYSGK 565
+ +Y RP++ L I G H + +D TFIPNDT + + R+ ++TGPN +GK
Sbjct: 565 AEYDYRRPLVDHSDALSITKGMHPVALTLLDKGTFIPNDTVMHSAQTRMILLTGPNMAGK 624
Query: 566 SIYIKQVALIVFLSHIGSFVPADAATVGLTDS--------KHMTAEQSSFMIDLHQVGMM 617
S YI+Q+AL+V ++ +GSF+PA +A +G+ D +++ S+FM+++ + +
Sbjct: 625 STYIRQIALLVIMAQMGSFIPARSAHIGIVDKIFTRIGAGDNLSKGMSTFMVEMAETANI 684
Query: 618 LRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCD-VPPKVLVCTHLTELLNEGCL 676
L AT +SL +LDE G+GT T DG+ + + + + D K L TH EL E +
Sbjct: 685 LHNATDRSLVILDEIGRGTSTYDGLAIAQAVVEFLLFTDGKKAKTLFATHYKEL-TELEM 743
Query: 677 PKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAA 736
F+ M EN+ + F+Y +V GH+ S+G+H A LAG P V+ RA
Sbjct: 744 HCQHVENFHAMV---KENSGQPI----FMYEIVKGHSKKSFGIHVAKLAGFPLSVVSRAQ 796
Query: 737 YVL 739
+L
Sbjct: 797 QIL 799
Score = 132 (51.5 bits), Expect = 1.6e-44, Sum P(3) = 1.6e-44
Identities = 37/128 (28%), Positives = 61/128 (47%)
Query: 171 KFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPI 230
K L +D + L++ P H G ++G S+ +M + TPMG RLLRN + P
Sbjct: 262 KHLLIDKASQTNLELLS----PIH---GEHRKG-SLLQVMERTSTPMGGRLLRNTLINPF 313
Query: 231 LDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLK 290
DL+ + R +++ FFL +L L L V+D+ + K ++ + T D
Sbjct: 314 YDLKEITLRQDSVEFFLQQADLRKILKRQLSCVRDLERLATKISTS--LATPKDIGTLRD 371
Query: 291 SICSLLHV 298
S+ S H+
Sbjct: 372 SLLSCTHI 379
Score = 56 (24.8 bits), Expect = 1.6e-44, Sum P(3) = 1.6e-44
Identities = 27/103 (26%), Positives = 42/103 (40%)
Query: 295 LLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKE--K 352
LL + I E S L Q R+ N ++K C L Y E+ + KE +
Sbjct: 435 LLRLRNIKENSKSWILEYQERIRNETGIKKLKVCYAQALGYYIEVASNLAP-QLPKEFIR 493
Query: 353 GYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLC 395
L E F + EL+Q +E+ +++ +LE LC
Sbjct: 494 RQSRLHAERFTTQ--ELQQFQDEVFSVEDKLQTLETKLFKELC 534
Score = 42 (19.8 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 661 VLVCTHLTELLNEGCLPKSERLKF 684
+L CTH+ + L LP+ KF
Sbjct: 373 LLSCTHIADNLQNCALPEFLENKF 396
>UNIPROTKB|E1C1F8 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032357 "oxidized purine DNA binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045910
"negative regulation of DNA recombination" evidence=IEA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074949 EMBL:AADN02047884 EMBL:AADN02047885
EMBL:AADN02047886 EMBL:AADN02047887 EMBL:AADN02047888
EMBL:AADN02047889 IPI:IPI00586936 Ensembl:ENSGALT00000025135
OMA:LLLDCQR Uniprot:E1C1F8
Length = 598
Score = 472 (171.2 bits), Expect = 3.2e-44, P = 3.2e-44
Identities = 165/572 (28%), Positives = 281/572 (49%)
Query: 205 SVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVK 264
S+ +++ T GRR L+ W ++P++ +N+RL+A+S L SE + + L +
Sbjct: 18 SLLWVLDHTKTSFGRRRLKKWVIQPLMKCSEINARLDAVSEILLSESSVFGQIQNL--LC 75
Query: 265 DIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEK 324
+P + + S F S FL + +L ++ + + + ++ +++
Sbjct: 76 KLPDLERGLCSV-FHKKCSTQEFFL-IVSTLSRLDSEIQA-LVPVIHSHVKS---PLLQN 129
Query: 325 AASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVA 384
A I EL + + I++ +K G T + + D +R+ EE+ + L ++
Sbjct: 130 ALLEIP-ELLSPVKHYLKILNEEAAKT-GDKTQLFKDLTD-FPVIRKKKEEILDVLSKI- 185
Query: 385 SLELVQLPHLCKEMFVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKR 444
L L+++ K++ P Y+ G +E L + + + M TK
Sbjct: 186 QLHLLEIR---KQIKNPSAEYVTVSG------QEFLVEVKNSHISSVPSNWV-MVSSTKA 235
Query: 445 LF-YHTPKTRELDNLLGDIYHK-ILDMERAITRDLVSHICLFSDH---LLKAVNFAAELD 499
+ +H+P E L + + +LD R L H FS+H + KA+ A +D
Sbjct: 236 VSRFHSPFITENYRHLNQLREQLVLDCGAEWLRFL-DH---FSEHYHTVSKAIGHLATID 291
Query: 500 CFLSLALVAHQNNYMRPILT-LEPLLDIQNGRHVLQEMTV---DTFIPNDTRIDNDG-RI 554
C SLA A Q +Y RP++ + + I+NGRH + ++ + D ++PN T + DG R+
Sbjct: 292 CLFSLAQAAKQGDYCRPVVKDNQQEIIIKNGRHPVIDVLLGEQDQYVPNTTNLSRDGERV 351
Query: 555 NIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS--KHMTAE------QSS 606
IITGPN GKS YIKQVALI ++ IGS+VPA+ +TVG+ D M A +S+
Sbjct: 352 MIITGPNMGGKSSYIKQVALITVMAQIGSYVPAEESTVGIVDGIFTRMGAADNIYKGRST 411
Query: 607 FMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTH 666
FM +L ++R+ATS+SL +LDE G+GT T DGI + T+ +F+T DV L TH
Sbjct: 412 FMEELTDTAEIIRRATSRSLVILDELGRGTSTHDGIAIAYATLEHFIT-DVESLTLFVTH 470
Query: 667 LTELLN-EGCLPK---SERLKFYTMSVLRPENNSTDVED----IVFLYRLVPGHALLSYG 718
+ E P + + F E ++ E+ + FLY++ G SYG
Sbjct: 471 YPSVCELENVYPGKVGNYHMAFLVNKEESAEQKGSEEEENPEFVTFLYQITKGVTARSYG 530
Query: 719 LHCALLAGVPAEVIKRAAYVLEAAQNNKHVER 750
L+ A LA +P E++K+AA+ + + +V+R
Sbjct: 531 LNVAKLADIPEEILKKAAHKSKELERLVNVKR 562
>TIGR_CMR|NSE_0335 [details] [associations]
symbol:NSE_0335 "DNA mismatch repair protein MutS"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0005524
"ATP binding" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_506224.1 STRING:Q2GE72
GeneID:3931998 KEGG:nse:NSE_0335 PATRIC:22680759
ProtClustDB:CLSK2528033 BioCyc:NSEN222891:GHFU-360-MONOMER
Uniprot:Q2GE72
Length = 815
Score = 431 (156.8 bits), Expect = 1.6e-42, Sum P(2) = 1.6e-42
Identities = 115/319 (36%), Positives = 175/319 (54%)
Query: 452 TRELDNLLGDIYHKILDMERAITRDLVSHIC---LFSDHLLKAVNFA-AELDCFLSLALV 507
T EL NL I K + R + +L +C L S+ LK + A AELD S A +
Sbjct: 507 TLELQNLEAQIA-KANENYRKLELELFRELCGKILASEGPLKEMIAAIAELDVIASFAEI 565
Query: 508 AHQNNYMRPILTLEPLLDIQNGRHVLQEMTVDTFIPNDTRIDNDGRINIITGPNYSGKSI 567
A Q Y+RP + L I GRH E V+ F+PND + R+ ++TGPN +GKS
Sbjct: 566 AVQRKYVRPQVDNSNELRISGGRHPFVEQ-VNAFVPNDLAFTSAERVCVLTGPNMAGKST 624
Query: 568 YIKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLR 619
Y++Q ALI L+ +GSFVPAD+A +G+ D S ++ +S+FM+++ + ++
Sbjct: 625 YLRQNALITILAQMGSFVPADSAHIGVVDRVFSRIGASDNIAMGKSTFMVEMMETANIVN 684
Query: 620 QATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN-EGCLPK 678
AT +SL +LDE G+GT T DGI + + Y V K + TH EL + E LP
Sbjct: 685 NATCRSLVILDEVGRGTSTLDGISIAQAVLEYLHD-SVNCKTIFATHYNELCDLESKLP- 742
Query: 679 SERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYV 738
R+K Y++ V R ++++ +Y++VPG SYG+H A+L+G+P +I+RA +
Sbjct: 743 --RMKCYSIEVKRWR------DEVLLMYKIVPGRGDNSYGIHTAMLSGIPEAIIRRATEI 794
Query: 739 LEAAQNNKHVER-WSHENI 756
A + N +E S+E I
Sbjct: 795 --AKEKNLSIENSLSNERI 811
Score = 95 (38.5 bits), Expect = 1.6e-42, Sum P(2) = 1.6e-42
Identities = 24/101 (23%), Positives = 50/101 (49%)
Query: 172 FLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPIL 231
+L LDA+ L++ ++ P E S+ ++++ T G+RLL+++ + P++
Sbjct: 267 YLALDASTIRGLELIESQT-PG--------EKNSLLQVIDQTCTAGGKRLLKSYIVSPLI 317
Query: 232 DLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKK 272
+E + +R + + FF EEL + L + D L +
Sbjct: 318 SVEEIQARQDKVEFFFIQEELRKKVRTELANIPDAERALSR 358
Score = 37 (18.1 bits), Expect = 1.9e-36, Sum P(2) = 1.9e-36
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 291 SICSLLHVNKIFEVGISESLREQL 314
S C + ++NK+ ++G ++ EQL
Sbjct: 69 SSCEV-YINKLVKLGRKVAICEQL 91
>UNIPROTKB|E9PGY4 [details] [associations]
symbol:MSH5-SAPCD1 "Protein MSH5-SAPCD1" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
EMBL:CR759787 GO:GO:0006298 GO:GO:0030983 EMBL:AL662834
EMBL:CR936239 SUPFAM:SSF48334 EMBL:CR925765 HGNC:HGNC:7328
HGNC:HGNC:41994 IPI:IPI00790547 SMR:E9PGY4 Ensembl:ENST00000548094
Ensembl:ENST00000549604 Ensembl:ENST00000549746 Uniprot:E9PGY4
Length = 271
Score = 450 (163.5 bits), Expect = 8.3e-42, P = 8.3e-42
Identities = 102/256 (39%), Positives = 152/256 (59%)
Query: 443 KRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFL 502
++L Y + +T+ELD LLGD++ +I D E + L + + L + ++ A+ LD L
Sbjct: 6 EKLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLL 65
Query: 503 SLALVAHQNNYMRPILTLEPL-LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGP 560
+LA A Y RP + + L + IQNGRH L E+ TF+PN T D GR+ +ITGP
Sbjct: 66 ALASAARDYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGP 125
Query: 561 NYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS--------KHMTAEQSSFMIDLH 612
N SGKSIY+KQV LI F++ +GSFVPA+ A +G D+ + ++ S+FMIDL+
Sbjct: 126 NSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLN 185
Query: 613 QVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFV----TCDVPPKVLVCTHLT 668
QV + AT+QSL L+DEFGKGT T DG+ LL + +++ TC P + V T+
Sbjct: 186 QVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTC---PHIFVATNFL 242
Query: 669 ELLNEGCLPKSERLKF 684
L+ LP+ +++
Sbjct: 243 SLVQLQLLPQGPLVQY 258
>TIGR_CMR|APH_0857 [details] [associations]
symbol:APH_0857 "DNA mismatch repair protein MutS"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
RefSeq:YP_505434.1 STRING:Q2GJL7 GeneID:3930413 KEGG:aph:APH_0857
PATRIC:20950410 HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
BioCyc:APHA212042:GHPM-871-MONOMER PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 Uniprot:Q2GJL7
Length = 820
Score = 421 (153.3 bits), Expect = 8.9e-42, Sum P(2) = 8.9e-42
Identities = 110/310 (35%), Positives = 164/310 (52%)
Query: 447 YHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLAL 506
Y T + +EL+ + + D+E I + L S I + A AELD +LA
Sbjct: 504 YTTAELKELEERIVSAQSESADLEAQIFKGLCSRIADECQDIGLAAEAVAELDVLTTLAE 563
Query: 507 VAHQNNYMRPILTLEPLLDIQNGRHVLQEMTVDTFIPNDTRIDNDGRINIITGPNYSGKS 566
VA +NNY+RPI+ I GRH + E+ D FI ND + +++ITGPN +GKS
Sbjct: 564 VAVENNYVRPIVDDSKQFKIVRGRHPVVEVGTD-FIANDCDLSEGNSMSLITGPNMAGKS 622
Query: 567 IYIKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMML 618
+++Q ALI L+HIGSFVPA+ A +G+ D S ++ S+FM+++ + +L
Sbjct: 623 TFLRQNALIAVLAHIGSFVPAEHAHIGVIDKIFSRVGASDNIALGHSTFMVEMVETAAIL 682
Query: 619 RQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVC-THLTELLNEGCLP 677
QATS+SL +LDE G+GT DG+ + I + DV +C TH EL
Sbjct: 683 NQATSKSLVILDEIGRGTAINDGLSIALAAIEHIH--DVTKSRAICATHYHELPKLSS-- 738
Query: 678 KSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAY 737
E ++F+ LR E +V VFL+ L+PG + SYG+H A LAG P ++RA +
Sbjct: 739 HFENIRFFC---LRIEEWKGEV---VFLHELIPGISSRSYGIHVAGLAGFPKGALERAKF 792
Query: 738 VLEAAQNNKH 747
+ +H
Sbjct: 793 FMSKFDEAEH 802
Score = 99 (39.9 bits), Expect = 8.9e-42, Sum P(2) = 8.9e-42
Identities = 44/177 (24%), Positives = 84/177 (47%)
Query: 170 NKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRP 229
N F+ +D A L++F T G K+G S+ ++ VT MG R+L+ + P
Sbjct: 265 NSFVLIDGPALRNLELFSTQS-------GE-KKG-SLISTIDHTVTAMGSRMLKRYLAFP 315
Query: 230 ILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILK--KFN--SPSFIYTASDW 285
+ +N R +A+ FF+ + L + + DI IL KF+ SP I+
Sbjct: 316 VACHNVINGRQDAVEFFVSNRSLCEVIRGVINGFPDIERILTRVKFSKCSPKDIHLLGRA 375
Query: 286 TAFLKSICSLL----H--VNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYV 336
+ + + ++ H ++KI V + + R+ L+L++ ++E A+ IT + ++
Sbjct: 376 LSKIFELSRIISRSTHAIISKIL-VSLGDH-RDLLKLISEVMLENNAT-ITKDGGFI 429
Score = 50 (22.7 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
Identities = 51/191 (26%), Positives = 80/191 (41%)
Query: 4 YMACILH-GHRVGVSYYDSSIRQLHV-LEVWEDSNSDF----P---LI-DIVKYQAQPQI 53
Y+ACI + G R GV++ + S HV ED +S+ P LI D +K Q ++
Sbjct: 130 YLACISNIGERYGVAWMELSTGLFHVRASKLEDLDSEIQRLGPSELLISDKLKEQQSMEL 189
Query: 54 IYTS-----TKSEESFLSALKRSD----GTTEAPTVK-LVKSSIFSYEQAWHRLIYLRVT 103
+ T ESF + KR++ G TV+ L L Y+R+T
Sbjct: 190 VLKRHRCAITSHNESFFDS-KRAEKVLCGVYGVTTVQGLGDFEEVEVSACGSLLEYVRMT 248
Query: 104 GMDDGLSIKERICYLNSMMDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDS 163
G S+ ++ Y + D S V + G L LE + T ++ G+ TID
Sbjct: 249 --QRG-SLP-KLSY-PKVRDSNSFVLI--DGPALRNLE---LFSTQSGEKKGSLISTIDH 298
Query: 164 VIEVSLNKFLK 174
+ ++ LK
Sbjct: 299 TVTAMGSRMLK 309
Score = 39 (18.8 bits), Expect = 1.8e-35, Sum P(2) = 1.8e-35
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 358 VREGFCDELD-ELRQIY-EEL--PEFLEEVASLELVQLPHLC 395
VR ++LD E++++ EL + L+E S+ELV H C
Sbjct: 155 VRASKLEDLDSEIQRLGPSELLISDKLKEQQSMELVLKRHRC 196
>UNIPROTKB|H0YF11 [details] [associations]
symbol:MSH5-SAPCD1 "Protein MSH5-SAPCD1" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
EMBL:AL662899 EMBL:CR759787 GO:GO:0006298 GO:GO:0030983
EMBL:AL662834 EMBL:CR936239 SUPFAM:SSF48334 EMBL:CR759915
EMBL:CR925765 EMBL:BX248133 HGNC:HGNC:41994 Ensembl:ENST00000469011
Ensembl:ENST00000476578 Ensembl:ENST00000480622
Ensembl:ENST00000482009 Ensembl:ENST00000492776
Ensembl:ENST00000498473 Uniprot:H0YF11
Length = 264
Score = 444 (161.4 bits), Expect = 3.7e-41, P = 3.7e-41
Identities = 101/252 (40%), Positives = 149/252 (59%)
Query: 447 YHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLAL 506
Y + +T+ELD LLGD++ +I D E + L + + L + ++ A+ LD L+LA
Sbjct: 3 YRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALAS 62
Query: 507 VAHQNNYMRPILTLEPL-LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSG 564
A Y RP + + L + IQNGRH L E+ TF+PN T D GR+ +ITGPN SG
Sbjct: 63 AARDYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSG 122
Query: 565 KSIYIKQVALIVFLSHIGSFVPADAATVGLTDS--------KHMTAEQSSFMIDLHQVGM 616
KSIY+KQV LI F++ +GSFVPA+ A +G D+ + ++ S+FMIDL+QV
Sbjct: 123 KSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAK 182
Query: 617 MLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFV----TCDVPPKVLVCTHLTELLN 672
+ AT+QSL L+DEFGKGT T DG+ LL + +++ TC P + V T+ L+
Sbjct: 183 AVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTC---PHIFVATNFLSLVQ 239
Query: 673 EGCLPKSERLKF 684
LP+ +++
Sbjct: 240 LQLLPQGPLVQY 251
>UNIPROTKB|Q9UFG2 [details] [associations]
symbol:DKFZp434C1615 "Putative uncharacterized protein
DKFZp434C1615" species:9606 "Homo sapiens" [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 EMBL:BX248244 GO:GO:0006298
GO:GO:0030983 SUPFAM:SSF48334 HSSP:Q56215 UniGene:Hs.647011
HGNC:HGNC:7328 ChiTaRS:MSH5 EMBL:BX248133 EMBL:AL122094
IPI:IPI00945579 PIR:T34526 STRING:Q9UFG2 Ensembl:ENST00000554793
HOVERGEN:HBG066397 Uniprot:Q9UFG2
Length = 263
Score = 444 (161.4 bits), Expect = 3.7e-41, P = 3.7e-41
Identities = 101/252 (40%), Positives = 149/252 (59%)
Query: 447 YHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLAL 506
Y + +T+ELD LLGD++ +I D E + L + + L + ++ A+ LD L+LA
Sbjct: 2 YRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLALAS 61
Query: 507 VAHQNNYMRPILTLEPL-LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSG 564
A Y RP + + L + IQNGRH L E+ TF+PN T D GR+ +ITGPN SG
Sbjct: 62 AARDYGYSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSG 121
Query: 565 KSIYIKQVALIVFLSHIGSFVPADAATVGLTDS--------KHMTAEQSSFMIDLHQVGM 616
KSIY+KQV LI F++ +GSFVPA+ A +G D+ + ++ S+FMIDL+QV
Sbjct: 122 KSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAK 181
Query: 617 MLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFV----TCDVPPKVLVCTHLTELLN 672
+ AT+QSL L+DEFGKGT T DG+ LL + +++ TC P + V T+ L+
Sbjct: 182 AVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTC---PHIFVATNFLSLVQ 238
Query: 673 EGCLPKSERLKF 684
LP+ +++
Sbjct: 239 LQLLPQGPLVQY 250
>UNIPROTKB|Q8TTB4 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:188937 "Methanosarcina acetivorans C2A" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:AE010299 GenomeReviews:AE010299_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:NP_615487.1 ProteinModelPortal:Q8TTB4
GeneID:1472415 KEGG:mac:MA0523 BioCyc:MACE188937:GI2O-590-MONOMER
Uniprot:Q8TTB4
Length = 900
Score = 467 (169.5 bits), Expect = 1.2e-40, Sum P(2) = 1.2e-40
Identities = 149/488 (30%), Positives = 244/488 (50%)
Query: 304 VGISESLREQL-RLLNFDIVEKAASCITT--ELAYVYELV-IGIIDVNRSKEKGYGTLVR 359
+G+ SLR+ L F+++++ A + + EL + E++ I I+D + G +++
Sbjct: 390 LGVVPSLRDSLLEKARFEMLKEIAEGLASFSELEELAEMIEIAIMDEPPVSVRE-GGMIK 448
Query: 360 EGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCIFEEK 419
G+ ELDELR I ++ +A+ + KE I + ++GY +F
Sbjct: 449 SGYSPELDELRDISSNSKQW---IAAFQQ-------KERERSGIKSL-KVGYNK-VFGYY 496
Query: 420 LDDTTLEQLQGFE-FAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLV 478
++ T Q E + +R F TP+ +E ++L+ K + +E I ++
Sbjct: 497 IEVTHANSSQVPEDYIRKQTMANAERFF--TPELKEKESLILTANEKAVALEYEIFAEIT 554
Query: 479 SHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTV 538
+ S L + LD SLA NNY RP LT + + I++GRH + E TV
Sbjct: 555 RTLSARSRELQETAERIGTLDVLASLAEATENNNYTRPQLTEDCKILIRDGRHPVVESTV 614
Query: 539 DT-FIPNDTRID-NDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD 596
F+PNDT +D + + ++TGPN +GKS Y++Q ALI ++ +GSFVPA A+VG+ D
Sbjct: 615 SGGFVPNDTEMDCKENQFLLVTGPNMAGKSTYMRQTALIAIMAQVGSFVPASYASVGIID 674
Query: 597 S--------KHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGT 648
+ + QS+FM+++ ++ +L A+ +SL LLDE G+GT T DG +
Sbjct: 675 QVFTRIGAFDDLASGQSTFMVEMVELANILNNASPKSLVLLDEIGRGTSTYDGYSIAKAV 734
Query: 649 INYFVTCD-VPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYR 707
+ + V + L TH +L K +R+K Y ++V D ++VFL +
Sbjct: 735 VEFLHNRGKVGIRALFATHYHQLT--ALEEKLKRVKNYHIAV------KEDGHELVFLRK 786
Query: 708 LVPGHALLSYGLHCALLAGVPAEVIKRAAYVL-EAAQNNKHVERWSHENISAQDQQYKNA 766
+VPG SYG+H A LAGVP +VI+RA +L E + N E EN + +
Sbjct: 787 IVPGATDRSYGIHVARLAGVPEKVIERANEILKELERENVLEEAEDGENGKKKKSKATAR 846
Query: 767 VEKMLAFD 774
+ML FD
Sbjct: 847 YTQMLLFD 854
Score = 152 (58.6 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 50/172 (29%), Positives = 86/172 (50%)
Query: 205 SVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVK 264
S++ +N TPMG R L+ W L+P+L +E +N RL+AI L + + L V+
Sbjct: 305 SLYRTLNCTRTPMGNRTLKKWLLKPLLSVEKINPRLDAIEELAEDSLLRYDIRDWLSDVR 364
Query: 265 DIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQL-RLLNFDIVE 323
DI ++ + + +A D A KS+ G+ SLR+ L F++++
Sbjct: 365 DIERLVGRIVYGNA--SARDLVALKKSL------------GVVPSLRDSLLEKARFEMLK 410
Query: 324 KAASCITT--ELAYVYELV-IGIIDVNRSKEKGYGTLVREGFCDELDELRQI 372
+ A + + EL + E++ I I+D + G +++ G+ ELDELR I
Sbjct: 411 EIAEGLASFSELEELAEMIEIAIMDEPPVSVRE-GGMIKSGYSPELDELRDI 461
Score = 40 (19.1 bits), Expect = 1.2e-40, Sum P(2) = 1.2e-40
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 88 FSYEQAWHRLIYLRVTGMDDGLSIKERICYLNS 120
F+ AW L Y + T M D I Y N+
Sbjct: 246 FAVYSAWAALEYAKTTQMRDLTHINTLRTYSNT 278
>UNIPROTKB|Q752H0 [details] [associations]
symbol:AFR603C "AFR603Cp" species:284811 "Ashbya gossypii
ATCC 10895" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0000735 "removal of nonhomologous ends"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0006301 "postreplication repair" evidence=IBA] [GO:0006311
"meiotic gene conversion" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0030466 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
EMBL:AE016819 GenomeReviews:AE016819_GR SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 OrthoDB:EOG4S7NZ5
GO:GO:0000735 RefSeq:NP_986150.1 ProteinModelPortal:Q752H0
STRING:Q752H0 EnsemblFungi:AAS53974 GeneID:4622435
KEGG:ago:AGOS_AFR603C PhylomeDB:Q752H0 Uniprot:Q752H0
Length = 956
Score = 445 (161.7 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
Identities = 162/602 (26%), Positives = 282/602 (46%)
Query: 164 VIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEG-F-------SVFGMMNKCVT 215
++E SL++F+KLDA+A +AL IF + PS G A G F S+ ++NKC T
Sbjct: 285 IVEYSLSEFMKLDASAVKALSIFP--QGPSTQS-GMATSGKFGGNGKITSLLQLLNKCKT 341
Query: 216 PMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHET-LKYVKDIPHILKKFN 274
G RLL W +P+ D ++ R N + + + EL + L + L V D+ + KK N
Sbjct: 342 NAGVRLLNEWLKQPLSDKGSIEKRHNLVDYLVDQLELRSILRDDYLPLVPDVRRLTKKLN 401
Query: 275 SPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELA 334
+ F + I +N + + + ++L E + + ++E + + +
Sbjct: 402 RNGSLEDVLKVYQFAQRIPE---INGVLKENL-DALSEGSHVKDL-VLETWYNPLNEHVE 456
Query: 335 YVY---ELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQL 391
++ E+V +D+ +E +++ F DEL +R EL + +++ ++ L
Sbjct: 457 PLHKFQEMVETTVDLEAYEETNE-FMIKVEFNDELARIRT---ELVDLKDKIRTIHLDTS 512
Query: 392 PHLCKEMFVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPK 451
L + + H + + C+ + D L Q + + ++ +++ T +
Sbjct: 513 DDLGFDPEKKLKLENHHV-HGWCMRLTRNDAKALRQHK----KYLELSTVKAGIYFSTKE 567
Query: 452 TRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQN 511
+ L + +G + + A+ +++V+ +S L K A LD S A V+
Sbjct: 568 LKLLSDEIGTLQQDYDRKQSALVKEIVTITLSYSPVLEKLSLVLANLDVLCSFAHVSSYA 627
Query: 512 N--YMRPIL----TLEPLLDIQNGRHVLQEMTVD-TFIPNDTRIDNDGR-INIITGPNYS 563
Y+RP++ + +++ RH L E + TFI ND ++ D IITGPN
Sbjct: 628 PIPYVRPVMYDMHAGQRKMELLASRHPLVEAQDEVTFISNDVVLEADSSGFAIITGPNMG 687
Query: 564 GKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS--------KHMTAEQSSFMIDLHQVG 615
GKS YI+QV +I L+ IG FVP DAA + + D+ S+FM ++ +
Sbjct: 688 GKSTYIRQVGVICLLAQIGCFVPCDAAEITIVDAILCRVGAGDSQLKGVSTFMAEMLETA 747
Query: 616 MMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTEL--LNE 673
+LR AT SL ++DE G+GT T DG GL +I+ + ++ L TH EL L +
Sbjct: 748 SILRNATKNSLIIIDELGRGTSTYDGFGL-AWSISEHIAKNIGCFALFATHFHELTALAD 806
Query: 674 GCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIK 733
C P L V E S +DI LY++ PG + S+G+H A + P++++K
Sbjct: 807 DC-PNVTNLHV----VAHVEEKSHKSDDITLLYKVEPGISDQSFGIHVAEVVQFPSKIVK 861
Query: 734 RA 735
A
Sbjct: 862 MA 863
Score = 65 (27.9 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 14 VGVSYYDSSIRQLHVLEVWED---SNSDFPLIDI-VKYQAQPQIIYTSTKSEESFLSALK 69
+GVSY DS+ ++ +L++ ++ SN + LI + VK P + ++ ESF + LK
Sbjct: 157 LGVSYVDSNSYKIGMLDIVDNEVYSNFESFLIQLGVKECLLPDL-----RNNESFSAELK 211
Query: 70 RSDGTTE--APTVKLVKSSIFS 89
+ G E V VK+S F+
Sbjct: 212 KVTGVIERCGCVVTFVKNSEFN 233
>TIGR_CMR|BA_3905 [details] [associations]
symbol:BA_3905 "DNA mismatch repair protein MutS"
species:198094 "Bacillus anthracis str. Ames" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006298
GO:GO:0030983 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_846152.1
RefSeq:YP_020544.1 RefSeq:YP_029871.1 ProteinModelPortal:Q81WR3
DNASU:1087964 EnsemblBacteria:EBBACT00000010607
EnsemblBacteria:EBBACT00000017303 EnsemblBacteria:EBBACT00000020116
GeneID:1087964 GeneID:2814777 GeneID:2848878 KEGG:ban:BA_3905
KEGG:bar:GBAA_3905 KEGG:bat:BAS3618
BioCyc:BANT260799:GJAJ-3677-MONOMER
BioCyc:BANT261594:GJ7F-3794-MONOMER Uniprot:Q81WR3
Length = 892
Score = 379 (138.5 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
Identities = 115/419 (27%), Positives = 207/419 (49%)
Query: 355 GTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMC 414
G ++++G+ D+LD+ R + + ++ E+ E + + K + + Y GY +
Sbjct: 413 GDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRER-DITGI-KSLKIG---YNRIFGYYI- 466
Query: 415 IFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAIT 474
++ L L + +R T + +E + L+ + KI+ +E +
Sbjct: 467 ----EVTKANLGALPEGRYERKQTLANAERFI--TDELKEKETLILEAEEKIVQLEYDLF 520
Query: 475 RDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQ 534
L + +F L +ELD S A V+ + +++P+LT + + I++GRH +
Sbjct: 521 TALREEVKVFIPKLQHLAKVISELDVLQSFATVSEEEQFVKPVLTTKREIFIKDGRHPVV 580
Query: 535 EMTVD--TFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATV 592
E ++ ++PND + + + +ITGPN SGKS Y++Q+AL+ +S IG FVPA A +
Sbjct: 581 EKVLNGKLYVPNDCIMPENMDVFLITGPNMSGKSTYMRQLALVTVMSQIGCFVPATEAVL 640
Query: 593 GLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGL 644
+ D + + + QS+FM+++ + + A+ +SL L DE G+GT T DG+ L
Sbjct: 641 PVFDQIFTRIGAADDLISGQSTFMVEMLEAKNAIANASERSLILFDEIGRGTSTYDGMAL 700
Query: 645 LGGTINYFVTCDVPPKVLVCTHLTEL-LNEGCLPKSERLKFYTMSVLRPENNSTDVEDIV 703
I + + + K L TH EL + E L ++LK +S + EN +V
Sbjct: 701 AQAIIEH-IHDQIGAKTLFSTHYHELTVLEDSL---DQLKNVHVSAIE-ENGK-----VV 750
Query: 704 FLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERWSHENISAQDQQ 762
FL+++ G A SYG+H A LA +P +I RA VL + + + + AQ+Q+
Sbjct: 751 FLHKIQDGAADKSYGIHVAQLAELPDSLIARAKEVLAQLEGQEEIVIPKRVEVKAQEQE 809
Score = 130 (50.8 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
Identities = 55/218 (25%), Positives = 99/218 (45%)
Query: 170 NKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRP 229
N+F+K+D + L++ +T + + K G S+ +++K T MG R+L+ W RP
Sbjct: 251 NQFMKIDVHSKRNLELTETLRT-------KEKTG-SLLWLLDKTKTAMGGRMLKQWMERP 302
Query: 230 ILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFL 289
++ E + RL + F+ L L E LK V D+ + K + A D L
Sbjct: 303 LIQKERIEERLEMVETFVNDYFLREDLKEKLKEVYDLERLAGKVAFGNV--NARD---LL 357
Query: 290 KSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRS 349
+ SLL V I E + SL + +++ A C + + EL+ I N
Sbjct: 358 QLRRSLLQVPAILE---AISLLDNAYAAR--LIQGADPCES-----LTELLGRSIQENPP 407
Query: 350 KEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLE 387
G ++++G+ D+LD+ R + + ++ E+ E
Sbjct: 408 LSIKDGDIIKDGYNDKLDQYRYVSKNGKTWIAELEKRE 445
>SGD|S000000688 [details] [associations]
symbol:MSH3 "Mismatch repair protein" species:4932
"Saccharomyces cerevisiae" [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0032302 "MutSbeta complex"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0030983
"mismatched DNA binding" evidence=IEA;IDA] [GO:0000735 "removal of
nonhomologous ends" evidence=IGI;IMP;TAS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006312 "mitotic recombination"
evidence=IMP] [GO:0000403 "Y-form DNA binding" evidence=IDA]
[GO:0000404 "loop DNA binding" evidence=IDA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IDA]
[GO:0000710 "meiotic mismatch repair" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0032135 "DNA insertion or deletion
binding" evidence=IDA] [GO:0006310 "DNA recombination"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000000688 GO:GO:0005524 GO:GO:0005737
GO:GO:0003684 EMBL:X59720 EMBL:BK006937 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0032135 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0032302 GO:GO:0000406 GO:GO:0000735 KO:K08736 OMA:KRTKSIY
HOGENOM:HOG000057130 OrthoDB:EOG42NN7M EMBL:X64954 EMBL:M96250
PIR:S19508 RefSeq:NP_010016.2 ProteinModelPortal:P25336 SMR:P25336
DIP:DIP-2422N IntAct:P25336 MINT:MINT-633647 STRING:P25336
PaxDb:P25336 PeptideAtlas:P25336 PRIDE:P25336 EnsemblFungi:YCR092C
GeneID:850454 KEGG:sce:YCR092C CYGD:YCR092c
GeneTree:ENSGT00550000074949 NextBio:966078 Genevestigator:P25336
GermOnline:YCR092C Uniprot:P25336
Length = 1018
Score = 455 (165.2 bits), Expect = 9.5e-40, P = 9.5e-40
Identities = 173/625 (27%), Positives = 299/625 (47%)
Query: 144 RIVDTL--EQKESGNASIT-IDSVIEVSLNKF-LKLDATAHEALQIFQTDKHPSHMGIGR 199
R+V L E N + I S+ +K + LD + ++L IF +H G G+
Sbjct: 385 RLVSKLYSHMVEYNNEQVMLIPSIYSPFASKIHMLLDPNSLQSLDIF------THDG-GK 437
Query: 200 AKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHET 259
S+F +++ T G R+LR W L+P++D+ + RL+AI + SE + E+
Sbjct: 438 G----SLFWLLDHTRTSFGLRMLREWILKPLVDVHQIEERLDAIEC-ITSEINNSIFFES 492
Query: 260 L-KYVKDIPHILKKFNSPSFIYTASDWTAF-LKSICSLLHVNKIFEVGISESLR------ 311
L + + P +L+ N + T+ F LK I S + K+ + +SE +
Sbjct: 493 LNQMLNHTPDLLRTLNRIMYGTTSRKEVYFYLKQITSFVDHFKMHQSYLSEHFKSSDGRI 552
Query: 312 -EQLRLLNFDIVEKAASCI-TTELAYVYELVIGIIDVNRSKEKGYGTLVREGF-CDELDE 368
+Q LL F + + + TT+L + + +I+V+ EK V + F + D
Sbjct: 553 GKQSPLL-FRLFSELNELLSTTQLPHF----LTMINVSAVMEKNSDKQVMDFFNLNNYDC 607
Query: 369 LRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCIFEEKLDDTTLEQL 428
I + E E V S +L + K + P + + ++ YL+ + ++ D + +
Sbjct: 608 SEGIIKIQRES-ESVRSQLKEELAEIRKYLKRPYLNFRDEVDYLIEVKNSQIKDLPDDWI 666
Query: 429 QGFEFAFSDMDGETKRLF-YHTPKTRELDNLLGDIYHKILDMERAIT-RDLVSHICLFSD 486
+ TK + + TP+T++L L + Y +L E + ++ ++ I
Sbjct: 667 KV---------NNTKMVSRFTTPRTQKLTQKL-EYYKDLLIRESELQYKEFLNKITAEYT 716
Query: 487 HLLKAVNFAAELDCFLSLALVAHQNNYMRP-ILTLEPLLDIQNGRH-VLQEMTVDTFIPN 544
L K A+ DC LSLA + NY+RP + + + +N R+ +++ + V ++PN
Sbjct: 717 ELRKITLNLAQYDCILSLAATSCNVNYVRPTFVNGQQAIIAKNARNPIIESLDVH-YVPN 775
Query: 545 DTRID-NDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS------ 597
D + +G+INIITGPN GKS YI+QVAL+ ++ IGSFVPA+ + + ++
Sbjct: 776 DIMMSPENGKINIITGPNMGGKSSYIRQVALLTIMAQIGSFVPAEEIRLSIFENVLTRIG 835
Query: 598 KH--MTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTC 655
H + S+F +++ + +L+ +SL LLDE G+GT T DGI + I YF
Sbjct: 836 AHDDIINGDSTFKVEMLDILHILKNCNKRSLLLLDEVGRGTGTHDGIAISYALIKYFSEL 895
Query: 656 DVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALL 715
P +L TH +L E KS ++ Y M + + D ++FLY+L G
Sbjct: 896 SDCPLILFTTHFP-MLGE---IKSPLIRNYHMDYVEEQKTGEDWMSVIFLYKLKKGLTYN 951
Query: 716 SYGLHCALLAGVPAEVIKRAAYVLE 740
SYG++ A LA + ++I RA + E
Sbjct: 952 SYGMNVAKLARLDKDIINRAFSISE 976
>UNIPROTKB|A6V1G8 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:381754 "Pseudomonas aeruginosa PA7" [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
EMBL:CP000744 GenomeReviews:CP000744_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:YP_001346903.1
ProteinModelPortal:A6V1G8 SMR:A6V1G8 STRING:A6V1G8 GeneID:5355863
KEGG:pap:PSPA7_1519 PATRIC:19824849
BioCyc:PAER381754:GHMY-1583-MONOMER Uniprot:A6V1G8
Length = 855
Score = 405 (147.6 bits), Expect = 2.0e-39, Sum P(2) = 2.0e-39
Identities = 129/393 (32%), Positives = 195/393 (49%)
Query: 355 GTLVREGFCDELDELRQIYEELPEFLEEVASLELVQ--LPHLCKEMFVPCIVYIHQIGYL 412
G +++ G+ ELDEL+ + E +FL ++ + E + LP+L K + IH GY
Sbjct: 421 GGVIKTGYDAELDELQALSENAGQFLMDLEAREKARTGLPNL-KVGYNR----IH--GYF 473
Query: 413 MCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERA 472
+ +L EQ + G + + TP+ + ++ + L E+A
Sbjct: 474 I-----ELPRVQAEQAPADYIRRQTLKGAER---FITPELKAFEDKALSAQSRALAREKA 525
Query: 473 ITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHV 532
+ +L+ + L + + AELD +LA A + RP L I+ GRH
Sbjct: 526 LYEELLERLIGHLAPLQDSASALAELDVLANLAERALNLDLNRPRFVEHTCLHIEQGRHP 585
Query: 533 LQEMTVDT-FIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAAT 591
+ E ++T F+ ND +D D R+ +ITGPN GKS Y++Q ALIV L+HIGSFVPA
Sbjct: 586 VVEQVLETPFVANDLALDADTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAARCE 645
Query: 592 VGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIG 643
+ L D S + +S+FM+++ + +L AT +SL L+DE G+GT T DG+
Sbjct: 646 LSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFDGLS 705
Query: 644 LLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDV-EDI 702
L L TH EL LP+S+ +V N+T+ E I
Sbjct: 706 LAWAAAEDLARTRA--FTLFATHYFELT---VLPESQP------AVANVHLNATEHNERI 754
Query: 703 VFLYRLVPGHALLSYGLHCALLAGVPAEVIKRA 735
VFL+ ++PG A SYGL A LAGVP+ VI+RA
Sbjct: 755 VFLHHVLPGPASQSYGLAVAQLAGVPSPVIQRA 787
Score = 95 (38.5 bits), Expect = 2.0e-39, Sum P(2) = 2.0e-39
Identities = 48/190 (25%), Positives = 83/190 (43%)
Query: 209 MMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPH 268
++++C T M RL+ W RP+ D L +R +I+ L +L LK + D+
Sbjct: 291 VVDRCQTAMASRLMSRWLNRPLRDRAVLEARQESIACLL-ERYRFENLQPQLKEIGDLER 349
Query: 269 ILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASC 328
IL + + D ++ +L L+ + L ++ A+
Sbjct: 350 ILARIGLRNA--RPRDLARLRDALAAL------------PDLQNAMTELEAPHLQALATT 395
Query: 329 ITT--ELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASL 386
I T ELA + L IID N G +++ G+ ELDEL+ + E +FL ++ +
Sbjct: 396 IGTYPELAEL--LAKAIID-NPPAVIRDGGVIKTGYDAELDELQALSENAGQFLMDLEAR 452
Query: 387 ELVQ--LPHL 394
E + LP+L
Sbjct: 453 EKARTGLPNL 462
>TIGR_CMR|SO_3431 [details] [associations]
symbol:SO_3431 "DNA mismatch repair protein MutS"
species:211586 "Shewanella oneidensis MR-1" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_718984.1
ProteinModelPortal:Q8EBR9 SMR:Q8EBR9 GeneID:1171106
KEGG:son:SO_3431 PATRIC:23526550 Uniprot:Q8EBR9
Length = 856
Score = 410 (149.4 bits), Expect = 2.3e-39, Sum P(3) = 2.3e-39
Identities = 142/435 (32%), Positives = 212/435 (48%)
Query: 355 GTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMC 414
G ++REG+ ELDE R L E AS LVQL KE I + ++GY
Sbjct: 426 GGVIREGYNAELDEWRG--------LSEGASDYLVQLEAREKER--TGIATL-KVGYNR- 473
Query: 415 IFEEKLDDTTLEQLQGFEFAFSDMDGETKRLF--YHTPKTRELDNLLGDIYHKILDMERA 472
+ ++ + +LQ + + +T + Y TP+ +E + + K L +E+
Sbjct: 474 VHGYYIE---VSRLQSNQVPLNYQRRQTLKNMERYITPELKEYEEKVLSSQGKALALEKQ 530
Query: 473 ITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRH- 531
+ +L I L AAELD + A A Y P L+ E + I+ GRH
Sbjct: 531 LWDELFDLILPKLHELQDFARAAAELDVLSNFAERAETLGYTSPELSSEIGVKIEAGRHP 590
Query: 532 VLQEMTVDTFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAAT 591
V++ ++ FI N + N R+ I+TGPN GKS Y++QVALI ++HIG FVPA+ AT
Sbjct: 591 VVERVSQTPFIANPVTLHNQRRMLIVTGPNMGGKSTYMRQVALITLMAHIGCFVPAERAT 650
Query: 592 VGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIG 643
+G D S + + +S+FM+++ + +L AT+QSL L+DE G+GT T DG+
Sbjct: 651 IGPIDRIFTRIGASDDLASGRSTFMVEMTETANILHNATAQSLVLMDEIGRGTSTYDGLS 710
Query: 644 LLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIV 703
L Y V L TH EL LP+ Y + + E+ T I
Sbjct: 711 LAWSAAEYLAQ-QVGAMTLFATHYFELTQ---LPELMS-GVYNVHLDAIEHEDT----IA 761
Query: 704 FLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKH-VE--RWSHENISAQD 760
F++ + G A SYGL A LAGVPA VIK A + L ++ H VE + + + A
Sbjct: 762 FMHAVQEGAASKSYGLQVAALAGVPARVIKAAKHKLHQLESRDHQVEGTKTPIQTLLALP 821
Query: 761 QQYKN-AVEKMLAFD 774
+ +N AV K+ A +
Sbjct: 822 EPVENPAVSKLKAIN 836
Score = 93 (37.8 bits), Expect = 2.3e-39, Sum P(3) = 2.3e-39
Identities = 56/229 (24%), Positives = 99/229 (43%)
Query: 161 IDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRR 220
I+++ + + LDA L++ Q ++ GR ++ +++ T MG R
Sbjct: 257 INAITRFNQTDTIVLDAATRRNLELTQ------NLSGGRDN---TLAAVLDNTATAMGSR 307
Query: 221 LLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIY 280
+L+ W +P+ D + +R A++ L + SLHE LK + DI I+ + +
Sbjct: 308 MLQRWIHQPLRDHALILARQTAVNELL-ETAVHESLHEQLKALGDIERIMARLA----LR 362
Query: 281 TAS--DWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYE 338
TA D+ A L+ SLL L+ L L+ K + E +
Sbjct: 363 TARPRDF-ARLRQALSLL-----------PQLQLSLSQLSAPHTVKLGQLLG-EFPQEQQ 409
Query: 339 LVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLE 387
L+ I N G ++REG+ ELDE R + E ++L ++ + E
Sbjct: 410 LLEHAIVDNPPMLIRDGGVIREGYNAELDEWRGLSEGASDYLVQLEARE 458
Score = 38 (18.4 bits), Expect = 2.3e-39, Sum P(3) = 2.3e-39
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 137 LAVLENERIVDTLEQKESGNASITIDSVIEVSLNK-FLKLDATAH 180
L V ++ LE KES A + + +E+ ++ F LD H
Sbjct: 150 LDVSSGRFVIAELETKESLEAELQRTNPVEILYSEDFGALDLLHH 194
>DICTYBASE|DDB_G0275999 [details] [associations]
symbol:msh1 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISS;IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IRD] [GO:0007131 "reciprocal meiotic recombination"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0043504 "mitochondrial DNA repair"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0275999
GO:GO:0005739 GO:GO:0005524 GO:GO:0003684 GenomeReviews:CM000151_GR
EMBL:AAFI02000013 GO:GO:0006298 GO:GO:0008094 GO:GO:0043504
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
GO:GO:0032139 OMA:ITQTVRD RefSeq:XP_643371.1 STRING:Q552L1
EnsemblProtists:DDB0232360 GeneID:8620254 KEGG:ddi:DDB_G0275999
InParanoid:Q552L1 ProtClustDB:CLSZ2729174 Uniprot:Q552L1
Length = 898
Score = 360 (131.8 bits), Expect = 5.7e-39, Sum P(2) = 5.7e-39
Identities = 80/236 (33%), Positives = 140/236 (59%)
Query: 523 LLDIQNGRHVLQEMTVDTFIPNDTRID---NDGRINIITGPNYSGKSIYIKQVALIVFLS 579
+LDI++GRH E + FI ND +++ +D + +ITGPN GKS +++Q ALI+ ++
Sbjct: 661 ILDIKDGRHPTVENSTTEFIGNDLQLNKGIDDANLWLITGPNMGGKSTFLRQNALIILMA 720
Query: 580 HIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDE 631
+GSFVPA A +G+ D S ++ ++S+FM+++ + +L++AT++S ++DE
Sbjct: 721 QMGSFVPASYAKIGIVDAIFSRVGSSDDLSNDKSTFMVEMVETASILKKATNRSFVIMDE 780
Query: 632 FGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLR 691
G+GT T DGI + + Y + + L TH EL L ++ +K Y +++
Sbjct: 781 VGRGTSTLDGISIAQSVVEYLNQVN-RCRTLFATHYHELTKN--LDETPHIKCYCLAI-- 835
Query: 692 PENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVL-EAAQNNK 746
D ++I+F +++VPG + SYG+ CA +AG+P V++R+ +L E NNK
Sbjct: 836 ----QEDEDEILFTHKIVPGMSNKSYGIFCAKMAGIPNSVLERSKSILFELESNNK 887
Score = 140 (54.3 bits), Expect = 5.7e-39, Sum P(2) = 5.7e-39
Identities = 60/262 (22%), Positives = 115/262 (43%)
Query: 126 SEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAHEALQI 185
S ++ ++G +L+ + I S N +++ + + + +D + ++L+I
Sbjct: 271 SNDELNSAGSILSYIIKTNIGIGNNNDNSSNPLFSLNLPKRIDSHNSMFIDYSTMQSLEI 330
Query: 186 FQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISF 245
+T + G K+G S+ ++K +TP G RLL + P L+L+ +NSRLN + F
Sbjct: 331 TKT-----YQG---DKKG-SLLESIDKTITPQGGRLLFSRIQSPSLELKEINSRLNQLEF 381
Query: 246 FLCSEELMASLHETLKYVKDIPHILK--KFNS--PSFIYTASDWTAFLKSICSLLHVNKI 301
F + EL + L DI ++ K N P ++T ++ S+ H+ +
Sbjct: 382 FYNNMELTNEVRSFLNAGSDIERCIQRLKINKSGPRDLHTIGS------TLQSIFHLKES 435
Query: 302 FEVGI-SESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVRE 360
+ + + + EQ +N ++ K T L + L +ID S G ++E
Sbjct: 436 LQSKLLTMKINEQTESIN-QLLLKIQQTHLTPL--LNHLSAALIDSPPSISVNDGGFIKE 492
Query: 361 GFCDELDELRQIYEELPEFLEE 382
G+ ELD + I + E
Sbjct: 493 GYSKELDRYKLISRNSDALINE 514
Score = 91 (37.1 bits), Expect = 1.1e-34, Sum P(3) = 1.1e-34
Identities = 51/228 (22%), Positives = 94/228 (41%)
Query: 294 SLLHVNKIFEVGI-SESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEK 352
S+ H+ + + + + + EQ +N ++ K T L + L +ID S
Sbjct: 428 SIFHLKESLQSKLLTMKINEQTESIN-QLLLKIQQTHLTPL--LNHLSAALIDSPPSISV 484
Query: 353 GYGTLVREGFCDELDELRQIYEELPEFLEEVASL--ELVQLPHLCKEMFVPCIVYIHQIG 410
G ++EG+ ELD + I + E +++P L ++ I IG
Sbjct: 485 NDGGFIKEGYSKELDRYKLISRNSDALINEFRETYRNKLKIPKL--KVNKNSI-----IG 537
Query: 411 YLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDME 470
Y + I D L + + S M ++ L L++ + K+L+ E
Sbjct: 538 YYIEISSSDRDKIPLNFIH-IQTLLSVMRFKSSDLII-------LEDEINRAASKVLEYE 589
Query: 471 RAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPIL 518
+ LV +C +S+ + + + A LD SLA ++ Q Y++PIL
Sbjct: 590 IQLYYVLVDLVCKYSNEIKQVSSVIANLDISTSLAKISKQRRYIKPIL 637
Score = 52 (23.4 bits), Expect = 1.1e-34, Sum P(3) = 1.1e-34
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 233 LENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFN 274
LENL+S LN I +E++ + +L Y + I ILK +N
Sbjct: 194 LENLSSELNRIQ----PKEIL--IPASLNYNQQISKILKPYN 229
>ASPGD|ASPL0000012704 [details] [associations]
symbol:AN3749 species:162425 "Emericella nidulans"
[GO:0061500 "gene conversion at mating-type locus, termination of
copy-synthesis" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 EMBL:BN001302
EMBL:AACD01000061 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 HSSP:P23909 GO:GO:0000735
HOGENOM:HOG000029776 KO:K08736 OrthoDB:EOG42NN7M RefSeq:XP_661353.1
STRING:Q5B6T1 GeneID:2873172 KEGG:ani:AN3749.2 Uniprot:Q5B6T1
Length = 1105
Score = 411 (149.7 bits), Expect = 7.6e-39, Sum P(2) = 7.6e-39
Identities = 107/308 (34%), Positives = 170/308 (55%)
Query: 442 TKRLF-YHTPKTRELDNLLGDIYHKILDM--ERAITRDLVSHICLFSDHLLKAVNFAAEL 498
TK++ +HTP+ ++ D + + L ++A L + I L V A L
Sbjct: 757 TKKVSRFHTPEVVKMIRQR-DQHREALAAACDKAFLA-LQAEIATNYQALRDCVQSLATL 814
Query: 499 DCFLSLALVAHQNNYMRPILTLEPLLDIQNGRH-VLQEMTVDTFIPNDTRIDNDG-RINI 556
DC +SLA +A Q Y++P T E + ++ GRH +++++ +D+++PND +D+ R +
Sbjct: 815 DCLVSLATLASQPGYVKPEYTEETCIHVEQGRHPMVEQLLLDSYVPNDINLDSSKTRALL 874
Query: 557 ITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS--------KHMTAEQSSFM 608
+TGPN GKS Y++QVALI + IGS+VPA AA +G+ D+ +M A +S+FM
Sbjct: 875 VTGPNMGGKSSYVRQVALIAIMGQIGSYVPAQAAKLGMLDAVFTRMGAFDNMLAGESTFM 934
Query: 609 IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLT 668
++L + +L+QAT +SL +LDE G+GT T DG+ + ++Y V + L TH
Sbjct: 935 VELSETADILKQATPRSLVILDELGRGTSTHDGVAIAQAVLDYMVR-SIRSLTLFITHYQ 993
Query: 669 EL-LNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGV 727
L P E L+ M E+ + EDI FLY + G A SYGL+ A LA +
Sbjct: 994 HLSAMVHSFPDGE-LRNVHMRF--SESGTGADEDITFLYEIGEGVAHRSYGLNVARLANL 1050
Query: 728 PAEVIKRA 735
PA +++ A
Sbjct: 1051 PAPLLEMA 1058
Score = 88 (36.0 bits), Expect = 7.6e-39, Sum P(2) = 7.6e-39
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 168 SLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFL 227
S + L+ +L+I+Q S G S+F +++ T G+R+LR W
Sbjct: 509 SSRSHMLLNGNTLTSLEIYQNQTDYSSKG--------SLFWTLDRTQTRFGQRMLRKWVG 560
Query: 228 RPILDLENLNSRLNAI 243
RP+LD L R+NA+
Sbjct: 561 RPLLDRRQLEDRVNAV 576
Score = 37 (18.1 bits), Expect = 1.7e-33, Sum P(2) = 1.7e-33
Identities = 14/76 (18%), Positives = 35/76 (46%)
Query: 107 DGLSIKERICYLNSMMDMGSEVQVRASGGLLAVLENER---IVDTLEQKESGNASITIDS 163
D +++R+ + + D + V V GLL ++++ ++ K S +TI
Sbjct: 565 DRRQLEDRVNAVEELKDFRNVVMVERIKGLLGKIKHDLEKGLIRIYYGKCSRPELLTILQ 624
Query: 164 VIEVSLNKFLKLDATA 179
+++ +F +++ A
Sbjct: 625 TMQMIAQEFADIESPA 640
>UNIPROTKB|Q5B6T1 [details] [associations]
symbol:msh3 "DNA mismatch repair protein msh3"
species:227321 "Aspergillus nidulans FGSC A4" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
EMBL:BN001302 EMBL:AACD01000061 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HSSP:P23909 GO:GO:0000735
HOGENOM:HOG000029776 KO:K08736 OrthoDB:EOG42NN7M RefSeq:XP_661353.1
STRING:Q5B6T1 GeneID:2873172 KEGG:ani:AN3749.2 Uniprot:Q5B6T1
Length = 1105
Score = 411 (149.7 bits), Expect = 7.6e-39, Sum P(2) = 7.6e-39
Identities = 107/308 (34%), Positives = 170/308 (55%)
Query: 442 TKRLF-YHTPKTRELDNLLGDIYHKILDM--ERAITRDLVSHICLFSDHLLKAVNFAAEL 498
TK++ +HTP+ ++ D + + L ++A L + I L V A L
Sbjct: 757 TKKVSRFHTPEVVKMIRQR-DQHREALAAACDKAFLA-LQAEIATNYQALRDCVQSLATL 814
Query: 499 DCFLSLALVAHQNNYMRPILTLEPLLDIQNGRH-VLQEMTVDTFIPNDTRIDNDG-RINI 556
DC +SLA +A Q Y++P T E + ++ GRH +++++ +D+++PND +D+ R +
Sbjct: 815 DCLVSLATLASQPGYVKPEYTEETCIHVEQGRHPMVEQLLLDSYVPNDINLDSSKTRALL 874
Query: 557 ITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS--------KHMTAEQSSFM 608
+TGPN GKS Y++QVALI + IGS+VPA AA +G+ D+ +M A +S+FM
Sbjct: 875 VTGPNMGGKSSYVRQVALIAIMGQIGSYVPAQAAKLGMLDAVFTRMGAFDNMLAGESTFM 934
Query: 609 IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLT 668
++L + +L+QAT +SL +LDE G+GT T DG+ + ++Y V + L TH
Sbjct: 935 VELSETADILKQATPRSLVILDELGRGTSTHDGVAIAQAVLDYMVR-SIRSLTLFITHYQ 993
Query: 669 EL-LNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGV 727
L P E L+ M E+ + EDI FLY + G A SYGL+ A LA +
Sbjct: 994 HLSAMVHSFPDGE-LRNVHMRF--SESGTGADEDITFLYEIGEGVAHRSYGLNVARLANL 1050
Query: 728 PAEVIKRA 735
PA +++ A
Sbjct: 1051 PAPLLEMA 1058
Score = 88 (36.0 bits), Expect = 7.6e-39, Sum P(2) = 7.6e-39
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 168 SLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFL 227
S + L+ +L+I+Q S G S+F +++ T G+R+LR W
Sbjct: 509 SSRSHMLLNGNTLTSLEIYQNQTDYSSKG--------SLFWTLDRTQTRFGQRMLRKWVG 560
Query: 228 RPILDLENLNSRLNAI 243
RP+LD L R+NA+
Sbjct: 561 RPLLDRRQLEDRVNAV 576
Score = 37 (18.1 bits), Expect = 1.7e-33, Sum P(2) = 1.7e-33
Identities = 14/76 (18%), Positives = 35/76 (46%)
Query: 107 DGLSIKERICYLNSMMDMGSEVQVRASGGLLAVLENER---IVDTLEQKESGNASITIDS 163
D +++R+ + + D + V V GLL ++++ ++ K S +TI
Sbjct: 565 DRRQLEDRVNAVEELKDFRNVVMVERIKGLLGKIKHDLEKGLIRIYYGKCSRPELLTILQ 624
Query: 164 VIEVSLNKFLKLDATA 179
+++ +F +++ A
Sbjct: 625 TMQMIAQEFADIESPA 640
>POMBASE|SPAC8F11.03 [details] [associations]
symbol:msh3 "MutS protein homolog 3" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=ISO] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0007534 "gene conversion at
mating-type locus" evidence=IMP] [GO:0032135 "DNA insertion or
deletion binding" evidence=ISO] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IMP] [GO:0061500 "gene conversion at
mating-type locus, termination of copy-synthesis" evidence=IMP]
[GO:0006298 "mismatch repair" evidence=TAS] [GO:0000403 "Y-form DNA
binding" evidence=ISO] [GO:0000404 "loop DNA binding" evidence=ISO]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPAC8F11.03
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006281
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0032135 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0000406 GO:GO:0007534 OrthoDB:EOG42NN7M EMBL:X61306
PIR:S22569 ProteinModelPortal:P26359 STRING:P26359 PRIDE:P26359
NextBio:20804407 Uniprot:P26359
Length = 993
Score = 398 (145.2 bits), Expect = 9.9e-39, Sum P(2) = 9.9e-39
Identities = 107/330 (32%), Positives = 174/330 (52%)
Query: 442 TKRLF-YHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDC 500
T+ LF +HTPK + L L + I R +S I + L LDC
Sbjct: 640 TRSLFRFHTPKIQSLLIELSSHEENLTISSEKIYRSFLSRISEHYNELRNVTTVLGTLDC 699
Query: 501 FLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTVD-TFIPNDTRIDNDG-RINIIT 558
+S A ++ Q+ Y RP + + LL I RH + E+ D +F+PN + +DG R +IT
Sbjct: 700 LISFARISSQSGYTRPEFSDKELL-IHESRHPMIELLSDKSFVPNHIHLSSDGVRCLLIT 758
Query: 559 GPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS--------KHMTAEQSSFMID 610
GPN GKS ++KQ+AL ++ G FVPA +A + + DS +++ S+FM++
Sbjct: 759 GPNMGGKSSFVKQLALSAIMAQSGCFVPAKSALLPIFDSILIRMGSSDNLSVNMSTFMVE 818
Query: 611 LHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTEL 670
+ + +L +AT +S+ ++DE G+GT T DG + ++Y + + +L TH L
Sbjct: 819 MLETKEVLSKATEKSMVIIDELGRGTSTIDGEAISYAVLHY-LNQYIKSYLLFVTHFPSL 877
Query: 671 LNEGCLPK--SERLKFYTMSVLRP-ENNSTDV-EDIVFLYRLVPGHALLSYGLHCALLAG 726
G L + +L+ + M L+ E+ T V + I FLY+LVPG A SYGL+ A +AG
Sbjct: 878 ---GILERRFEGQLRCFHMGYLKSKEDFETSVSQSISFLYKLVPGVASKSYGLNVARMAG 934
Query: 727 VPAEVIKRAAYVLEAAQNNKHVERWSHENI 756
+P ++ RA E ++N + R + +N+
Sbjct: 935 IPFSILSRAT---EISENYEKKHRNARKNV 961
Score = 99 (39.9 bits), Expect = 9.9e-39, Sum P(2) = 9.9e-39
Identities = 33/120 (27%), Positives = 60/120 (50%)
Query: 175 LDATAHEALQIF--QTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILD 232
L A E L++F QTD H +G S+F ++++ T G+R+L+ W +P++D
Sbjct: 404 LSKQALEGLELFVNQTD----HTPVG------SLFWVLDRTYTRFGQRMLQRWLQKPLVD 453
Query: 233 LENLNSRLNAIS-FFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKS 291
EN+ RL+A+ S + ++ + L + D+ L + Y A+ +AF K+
Sbjct: 454 KENIIERLDAVEELAFNSNSQVQAIRKMLYRLPDLEKGLSRIYYQRGFYKAA--SAFSKN 511
>TAIR|locus:2131829 [details] [associations]
symbol:MSH3 "AT4G25540" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IBA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006200 "ATP catabolic process" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0030983 "mismatched
DNA binding" evidence=IDA] [GO:0007126 "meiosis" evidence=RCA]
[GO:0007129 "synapsis" evidence=RCA] [GO:0009410 "response to
xenobiotic stimulus" evidence=RCA] [GO:0048522 "positive regulation
of cellular process" evidence=RCA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003684 EMBL:AL022197 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000710
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032300 GO:GO:0000404
EMBL:AJ007791 IPI:IPI00524241 PIR:T05793 PIR:T51613
RefSeq:NP_194284.2 UniGene:At.506 ProteinModelPortal:O65607
SMR:O65607 STRING:O65607 PaxDb:O65607 PRIDE:O65607
EnsemblPlants:AT4G25540.1 GeneID:828659 KEGG:ath:AT4G25540
TAIR:At4g25540 HOGENOM:HOG000029776 InParanoid:O65607 KO:K08736
OMA:KRTKSIY PhylomeDB:O65607 ProtClustDB:CLSN2680081
Genevestigator:O65607 GermOnline:AT4G25540 Uniprot:O65607
Length = 1081
Score = 406 (148.0 bits), Expect = 1.2e-38, Sum P(2) = 1.2e-38
Identities = 121/368 (32%), Positives = 185/368 (50%)
Query: 443 KRLFYHTPK-TRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCF 501
K + YH P+ LD L H + + RA + + AV A LDC
Sbjct: 696 KTIRYHPPEIVAGLDELALATEHLAI-VNRASWDSFLKSFSRYYTDFKAAVQALAALDCL 754
Query: 502 LSLALVAHQNNYMRP--ILTLEPL-LDIQNGRH-VLQEMTVDTFIPNDTRIDNDGRI-NI 556
SL+ ++ NY+RP + EP+ ++IQ+GRH VL+ + D F+PNDT + +G I
Sbjct: 755 HSLSTLSRNKNYVRPEFVDDCEPVEINIQSGRHPVLETILQDNFVPNDTILHAEGEYCQI 814
Query: 557 ITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS--KHMTAE------QSSFM 608
ITGPN GKS YI+QVALI ++ +GSFVPA A + + D M A +S+F+
Sbjct: 815 ITGPNMGGKSCYIRQVALISIMAQVGSFVPASFAKLHVLDGVFTRMGASDSIQHGRSTFL 874
Query: 609 IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLT 668
+L + ++R +S+SL +LDE G+GT T DG+ + T+ + + + VL TH
Sbjct: 875 EELSEASHIIRTCSSRSLVILDELGRGTSTHDGVAIAYATLQHLLA-EKRCLVLFVTHYP 933
Query: 669 EL--LNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAG 726
E+ ++ G P S + L+ + S D +D+ +LY+LV G S+G A LA
Sbjct: 934 EIAEISNG-FPGSVGTYHVSYLTLQKDKGSYDHDDVTYLYKLVRGLCSRSFGFKVAQLAQ 992
Query: 727 VPAEVIKRA---AYVLEAAQNNKHVERWSHENISAQDQQYKNAVEKMLAFDVLKGDLRLF 783
+P I+RA A LEA + ER + ++ + A E + A L DL+
Sbjct: 993 IPPSCIRRAISMAAKLEAEVRAR--ERNTRMGEPEGHEEPRGAEESISALGDLFADLKFA 1050
Query: 784 FQDLLPSK 791
+ P K
Sbjct: 1051 LSEEDPWK 1058
Score = 91 (37.1 bits), Expect = 1.2e-38, Sum P(2) = 1.2e-38
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 167 VSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWF 226
+S N + L A + L++ + + S G S+F MN +T G RLLR+W
Sbjct: 414 LSSNTEMTLSANTLQQLEVVKNNSDGSESG--------SLFHNMNHTLTVYGSRLLRHWV 465
Query: 227 LRPILDLENLNSRLNAIS 244
P+ D +++RL+A+S
Sbjct: 466 THPLCDRNLISARLDAVS 483
Score = 41 (19.5 bits), Expect = 2.2e-33, Sum P(2) = 2.2e-33
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 408 QIGYLMCIFEEKLDDTTLEQLQGFEFAF 435
Q +L+C+ +E++ TL G E +F
Sbjct: 233 QSNFLVCVVDERVKSETLGC--GIEMSF 258
>SGD|S000005450 [details] [associations]
symbol:MSH2 "Protein that forms heterodimers with Msh3p and
Msh6p that bind to DNA" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA;IDA] [GO:0006298 "mismatch
repair" evidence=IEA;IMP] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA;IPI]
[GO:0032302 "MutSbeta complex" evidence=IEA;IPI] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0036297 "interstrand cross-link
repair" evidence=IGI] [GO:0000735 "removal of nonhomologous ends"
evidence=IGI;IMP] [GO:0000710 "meiotic mismatch repair"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0006301 "postreplication repair" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0045128 "negative
regulation of reciprocal meiotic recombination" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0000228 "nuclear
chromosome" evidence=IDA] [GO:0006312 "mitotic recombination"
evidence=IMP] [GO:0000403 "Y-form DNA binding" evidence=IDA]
[GO:0000404 "loop DNA binding" evidence=IDA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IDA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IGI] [GO:0006311 "meiotic gene conversion" evidence=IMP]
[GO:0032135 "DNA insertion or deletion binding" evidence=IDA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IDA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IMP;IDA] [GO:0006310 "DNA recombination" evidence=IMP]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
SGD:S000005450 GO:GO:0005524 EMBL:BK006948 GO:GO:0003684
GO:GO:0030466 EMBL:X83121 GO:GO:0030983 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0006301 GO:GO:0008094 GO:GO:0036297
GO:GO:0006311 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0000710 GO:GO:0032301 HOGENOM:HOG000196498
KO:K08735 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406
GeneTree:ENSGT00550000074867 OrthoDB:EOG4S7NZ5 GO:GO:0000735
EMBL:M84170 EMBL:Z74832 PIR:S57379 RefSeq:NP_014551.1
ProteinModelPortal:P25847 SMR:P25847 DIP:DIP-2415N IntAct:P25847
MINT:MINT-631153 STRING:P25847 PaxDb:P25847 PeptideAtlas:P25847
EnsemblFungi:YOL090W GeneID:854063 KEGG:sce:YOL090W CYGD:YOL090w
NextBio:975668 Genevestigator:P25847 GermOnline:YOL090W
Uniprot:P25847
Length = 964
Score = 438 (159.2 bits), Expect = 6.2e-38, P = 6.2e-38
Identities = 186/755 (24%), Positives = 343/755 (45%)
Query: 14 VGVSYYDSSIRQLHVLEVWEDSNSDFPLID--IVKYQAQPQIIYTSTKSEESFLSALKRS 71
+GV++ D++ ++ +L++ + N + ++ +++ + ++ T + S K
Sbjct: 157 IGVAFIDTTAYKVGMLDIVD--NEVYSNLESFLIQLGVKECLVQDLTSNSNSNAEMQKVI 214
Query: 72 DGTTEAP-TVKLVKSSIFSYEQAWHRLIYLRVTGMDDGLSIKERICYLNSMMDMGSEVQV 130
+ V L+K+S FS + L ++ G D LS+ ++ Y S + MG+
Sbjct: 215 NVIDRCGCVVTLLKNSEFSEKDV--ELDLTKLLGDDLALSLPQK--Y--SKLSMGA---C 265
Query: 131 RASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAHEALQIF-QTD 189
A G L +L EQ + G + +E L +F+KLDA+A +AL +F Q
Sbjct: 266 NALIGYLQLLS--------EQDQVGKYEL-----VEHKLKEFMKLDASAIKALNLFPQGP 312
Query: 190 KHP---SHMGI------GRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRL 240
++P +++ + G + + S+F ++N C T G RLL W +P+ +++ +N R
Sbjct: 313 QNPFGSNNLAVSGFTSAGNSGKVTSLFQLLNHCKTNAGVRLLNEWLKQPLTNIDEINKRH 372
Query: 241 NAISFFLCSEELMASL-HETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVN 299
+ + + + EL L E L + DI + KK N + F K I ++ V
Sbjct: 373 DLVDYLIDQIELRQMLTSEYLPMIPDIRRLTKKLNKRGNLEDVLKIYQFSKRIPEIVQVF 432
Query: 300 KIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVR 359
F +S E + L + S L+ E+V +D++ +E +++
Sbjct: 433 TSFLE--DDSPTEPVNELVRSVWLAPLSHHVEPLSKFEEMVETTVDLDAYEENNE-FMIK 489
Query: 360 EGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQI-GYLMCIFEE 418
F +EL ++R +L +E+ S+ L L + + H + G+ M
Sbjct: 490 VEFNEELGKIRS---KLDTLRDEIHSIHLDSAEDLGFDPDKKLKLENHHLHGWCM----- 541
Query: 419 KLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMER-AITRDL 477
+L ++L+ + + ++ +F+ T + + + N +I K D ++ A+ R++
Sbjct: 542 RLTRNDAKELRKHK-KYIELSTVKAGIFFSTKQLKSIANET-NILQKEYDKQQSALVREI 599
Query: 478 VSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNN--YMRPIL---TLEPLLDIQNGRHV 532
++ ++ K A LD S A + Y+RP L E + + RH
Sbjct: 600 INITLTYTPVFEKLSLVLAHLDVIASFAHTSSYAPIPYIRPKLHPMDSERRTHLISSRHP 659
Query: 533 LQEMTVD-TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAA 590
+ EM D +FI ND +++ G IITGPN GKS YI+QV +I ++ IG FVP + A
Sbjct: 660 VLEMQDDISFISNDVTLESGKGDFLIITGPNMGGKSTYIRQVGVISLMAQIGCFVPCEEA 719
Query: 591 TVGLTDS--------KHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGI 642
+ + D+ S+FM+++ + +L+ A+ SL ++DE G+GT T DG
Sbjct: 720 EIAIVDAILCRVGAGDSQLKGVSTFMVEILETASILKNASKNSLIIVDELGRGTSTYDGF 779
Query: 643 GLLGGTINYFVTCDVPPKVLVCTHLTEL--LNEGCLPKSERLKFYTMSVLRPENNSTDVE 700
GL + + + L TH EL L+E LP + + + D E
Sbjct: 780 GLAWAIAEH-IASKIGCFALFATHFHELTELSEK-LPNVKNMHVVAHIEKNLKEQKHDDE 837
Query: 701 DIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRA 735
DI LY++ PG + S+G+H A + P +++K A
Sbjct: 838 DITLLYKVEPGISDQSFGIHVAEVVQFPEKIVKMA 872
>TIGR_CMR|CBU_1056 [details] [associations]
symbol:CBU_1056 "DNA mismatch repair protein MutS"
species:227377 "Coxiella burnetii RSA 493" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_820057.2
ProteinModelPortal:Q83CQ2 SMR:Q83CQ2 PRIDE:Q83CQ2 GeneID:1208957
KEGG:cbu:CBU_1056 PATRIC:17930837
BioCyc:CBUR227377:GJ7S-1048-MONOMER Uniprot:Q83CQ2
Length = 859
Score = 376 (137.4 bits), Expect = 8.2e-38, Sum P(2) = 8.2e-38
Identities = 119/399 (29%), Positives = 189/399 (47%)
Query: 355 GTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMC 414
G ++ +G+ LDELR + +FL ++L Q ++ + Y GY +
Sbjct: 430 GGVIADGYDAPLDELRNMSTNSHQFL-----IDLEQQERERTKINTVKVGYNRIHGYYIE 484
Query: 415 IFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAIT 474
I + E ++ +R Y TP+ + ++ + + L E+ +
Sbjct: 485 ISRAQAKQAPTEYIRRQTLK------NVER--YITPELKIFEDKVLSSRSRALAREKELY 536
Query: 475 RDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRH-VL 533
L+ + L + + A LD +LA A N+ P P++ I+ GRH ++
Sbjct: 537 EQLLDTLIEKLIPLQQCASAIANLDVLNTLAERADTLNFNAPQFCDYPIIKIEAGRHPIV 596
Query: 534 QEMTVDTFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVG 593
+ + D F+PNDT +D R+ IITGPN GKS Y++Q ALI L++IGSFVPA A +G
Sbjct: 597 ENVMTDPFMPNDTHLDEKRRMLIITGPNMGGKSTYMRQTALITLLAYIGSFVPAKNAQLG 656
Query: 594 LTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLL 645
D + + + +S+FM+++ + +L AT +SL L+DE G+GT T DG+ L
Sbjct: 657 PIDRIFTRIGAADDLASGRSTFMVEMTETAAILHNATEESLVLMDEVGRGTSTFDGLSLA 716
Query: 646 GGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFL 705
+Y T + L TH EL + +K + + E E I+FL
Sbjct: 717 YACASYLAT-KLKAFALFATHYFELT--ALASTLQAVKNVHLDAVEHE------EKIIFL 767
Query: 706 YRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQN 744
+ L G A SYGL A LAG+P VI+ A LE +N
Sbjct: 768 HALREGPANKSYGLQVAQLAGIPRSVIQHARQKLEELEN 806
Score = 111 (44.1 bits), Expect = 8.2e-38, Sum P(2) = 8.2e-38
Identities = 24/74 (32%), Positives = 42/74 (56%)
Query: 199 RAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHE 258
+ +E S+ +++ TPMG RLLR W RP+ D L R NA+S L + + ++E
Sbjct: 289 QGEEVHSLAWLLDHTATPMGSRLLRRWINRPLRDQILLQQRQNAVSTLL-EKRNYSEIYE 347
Query: 259 TLKYVKDIPHILKK 272
L+++ D+ I+ +
Sbjct: 348 NLRHIGDLERIVAR 361
Score = 41 (19.5 bits), Expect = 1.8e-30, Sum P(2) = 1.8e-30
Identities = 22/85 (25%), Positives = 39/85 (45%)
Query: 306 ISESLREQLRLLNFDIVEKAASCITTELAY--VYELVIGIIDVNRSKEKGYGTLVREGFC 363
I+ LR+Q+ L + A S + + Y +YE + I D+ R + +R
Sbjct: 316 INRPLRDQILLQQR---QNAVSTLLEKRNYSEIYENLRHIGDLERIVAR---IALRSARP 369
Query: 364 DELDELRQIYEELPEFLEEVASLEL 388
+L +LRQ LP +++ +L L
Sbjct: 370 RDLMQLRQALGVLPTLHQQLTNLPL 394
>CGD|CAL0000288 [details] [associations]
symbol:orf19.3608 species:5476 "Candida albicans" [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000735 "removal of nonhomologous ends"
evidence=IEA] [GO:0000710 "meiotic mismatch repair" evidence=IEA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IEA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IEA] [GO:0032135 "DNA insertion or deletion binding"
evidence=IEA] [GO:0000404 "loop DNA binding" evidence=IEA]
[GO:0000403 "Y-form DNA binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0005634 GO:GO:0006298 GO:GO:0030983
EMBL:AACQ01000103 EMBL:AACQ01000102 eggNOG:COG0249 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HSSP:P23909 KO:K08736
RefSeq:XP_714452.1 RefSeq:XP_714501.1 ProteinModelPortal:Q59Y41
STRING:Q59Y41 GeneID:3643846 GeneID:3643889 KEGG:cal:CaO19.11091
KEGG:cal:CaO19.3608 Uniprot:Q59Y41
Length = 1037
Score = 436 (158.5 bits), Expect = 1.2e-37, P = 1.2e-37
Identities = 174/617 (28%), Positives = 293/617 (47%)
Query: 171 KFLKLDATAHEALQIF-QTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRP 229
K++ L A +L+IF T H + +G S+F ++N T G RLL+ W RP
Sbjct: 412 KYMILPANTLNSLEIFTNTTDHTT--------KG-SLFKLLNNTKTIFGSRLLQKWVSRP 462
Query: 230 ILDLENLNSRLNAISFFLCSE--ELMASLHETLKYVK--DIPHILKKFNSPSFIYTASDW 285
++ ++++ R AI L SE ++ S+ L +K D+ +L K + S ++
Sbjct: 463 LVHIQDIKDRHQAIED-LQSEYNHVVDSISNFLTKIKYLDLEGLLSKIHYSSTNNNNNNL 521
Query: 286 TAFLKSICSLL-HVNKI------FEVGISESLREQLRLLNFDIVEKAASCITTELAYVYE 338
K + LL ++ +I FE I +S + + LL I ++ + T++ + E
Sbjct: 522 RINRKQVYLLLSNLQEILILVQKFEKSI-KSFKFKSSLL-IQIFDELLTISQTDIIII-E 578
Query: 339 LVIGIIDVNRSKEKGYGTLVREGFC-DELDELRQIYEELPEFLEEVASLELVQLPHLCKE 397
+ +ID++ K R+ F + D + Y+ + ++ +++ E QL + KE
Sbjct: 579 NFLSMIDLSFIDCKESSEQCRKFFKRNSFDSIELQYQNIAQYQQQI---EQEQLEIIRKE 635
Query: 398 MFVPCIVYIHQIG--YLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTREL 455
+ + Y+ + G YL+ I + D + + L ++ R Y E
Sbjct: 636 LGNSKLKYVQKDGERYLIEIRNNQRDKLS-KILDDKDYILIKSTQTITR--YRKKSVTEY 692
Query: 456 DNLLGDIYH-----KILDME-RAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAH 509
LL YH K D E + +DL S+ LF K + A DC LSL +
Sbjct: 693 LKLLQ--YHEEMLIKTCDEEFQNFLKDLDSNYTLF----YKIIKNLAIFDCLLSLTTTSS 746
Query: 510 QNNYMRPILTLEPL-LDIQNGRHVLQEMTVDTFIPNDTRID---NDGRINIITGPNYSGK 565
NY RP L + L + ++ RH E ++ ND I+ + R+ IITGPN GK
Sbjct: 747 LPNYTRPTLIDDDLTILVKQARHPTIEQLRPNYVANDININIEYDKNRVLIITGPNMGGK 806
Query: 566 SIYIKQVALIVFLSHIGSFVPADAATVGLTDSK--HMTAEQ------SSFMIDLHQVGMM 617
S Y+K VAL+ ++ IG ++P AT+G+ DS M A S+FM+++ Q +
Sbjct: 807 SSYVKTVALLTVMTQIGCYLPCQNATMGIFDSIFIRMGANDNILKGYSTFMMEMLQCKNI 866
Query: 618 LRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTEL-LNEGCL 676
+ +++SL +LDE G+GT T DGI L + Y + + P VL TH + + E
Sbjct: 867 ISMMSNRSLIILDEIGRGTGTIDGISLAYSILKYLIESEFKPLVLFITHYPSIHVLEQEY 926
Query: 677 PKSERLKFYTMSVLRPENNST-DVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRA 735
P ++ + Y M +NN+ ++ +I+FLY L G SYGL+ A LAG+ ++IK+A
Sbjct: 927 P-NQLVVNYHMGYQEIKNNTPGEIPEIIFLYNLCRGVVNNSYGLNVAKLAGISHDIIKQA 985
Query: 736 AYVLEAAQNNKHV-ERW 751
V E +++ + E W
Sbjct: 986 YRVSEKVKSDIELKEYW 1002
>UNIPROTKB|O66652 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224324 "Aquifex aeolicus VF5" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:AE000657 GenomeReviews:AE000657_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 PIR:H70327 RefSeq:NP_213212.1
ProteinModelPortal:O66652 GeneID:1192886 KEGG:aae:aq_308
PATRIC:20958222 HOGENOM:HOG000221406 OMA:ITQTVRD
BioCyc:AAEO224324:GJBH-228-MONOMER Uniprot:O66652
Length = 859
Score = 434 (157.8 bits), Expect = 1.2e-37, P = 1.2e-37
Identities = 161/556 (28%), Positives = 271/556 (48%)
Query: 249 SEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISE 308
S E + + E ++ +K+ L K + +D + I S + + V +
Sbjct: 308 SREKIERIQEGVQELKENREALLKIRQ--ILEGMADLERLVSKISSNMATPREL-VYLKN 364
Query: 309 SLR--EQLRLLNFDIVEKAASCITTELAYVYELVIGII-DVNRSKEKG------YGTLVR 359
SL+ E+LRLL ++ KA I E+ +E II D+ ++ + G L+R
Sbjct: 365 SLKKVEELRLLLLEL--KAP--IFKEILQNFEDTKKIINDIEKTLVEDPPLHVKEGGLIR 420
Query: 360 EGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGY--LMCIFE 417
EG LDELR I + +L E L +E + + +IGY +M +
Sbjct: 421 EGVNAYLDELRFIRDNAETYLREYEK-------KLRQETGIQSL----KIGYNKVMGYYI 469
Query: 418 EKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDL 477
E + L+ + + F ++R + T + + L+ + +I D+E + ++L
Sbjct: 470 E-VTKPNLKYVPSY-FRRRQTLSNSER--FTTEELQRLEEKILSAQTRINDLEYELYKEL 525
Query: 478 VSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMT 537
+ D + + AE+D SLA +A++ ++ +P + L I+ GRH + E
Sbjct: 526 RERVVKELDKVGNNASAVAEVDFIQSLAQIAYEKDWAKPQIHEGYELIIEEGRHPVIEEF 585
Query: 538 VDTFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS 597
V+ ++PNDT++D D I++ITGPN +GKS YI+QV ++ LSHIGSF+PA A + + D+
Sbjct: 586 VENYVPNDTKLDRDSFIHVITGPNMAGKSSYIRQVGVLTLLSHIGSFIPARRAKIPVVDA 645
Query: 598 KH--------MTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTI 649
+ S+FM ++ +V +L AT +SL +LDE G+GT T DGI + +
Sbjct: 646 LFTRIGSGDVLALGVSTFMNEMLEVSNILNNATEKSLVILDEVGRGTSTYDGIAISKAIV 705
Query: 650 NYFVTCDVPPKVLVCTHLTELLN-EGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRL 708
Y ++ + K L+ TH E+ EG K E +K Y M V + E I FLY L
Sbjct: 706 KY-ISEKLKAKTLLATHFLEITELEG---KIEGVKNYHMEVEKTP------EGIRFLYIL 755
Query: 709 VPGHALLSYGLHCALLAGVPAEVIKRAAYVL---EAAQNNKH-----VERWSHENISAQD 760
G A S+G+ A LAG+P EV++ A +L E +N K +E ++ AQ
Sbjct: 756 KEGKAEGSFGIEVAKLAGLPEEVVEEARKILRELEEKENKKEDIVPLLEETFKKSEEAQR 815
Query: 761 -QQYKNAVEKMLAFDV 775
++Y+ ++K+ D+
Sbjct: 816 LEEYEEIIKKIEEIDI 831
>CGD|CAL0005874 [details] [associations]
symbol:orf19.496 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032139 "dinucleotide insertion or
deletion binding" evidence=IEA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0043504 "mitochondrial DNA repair" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0005874 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:AACQ01000055 EMBL:AACQ01000054 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 HOGENOM:HOG000157750 SUPFAM:SSF53150
RefSeq:XP_717359.1 RefSeq:XP_717448.1 STRING:Q5A6Q9 GeneID:3640907
GeneID:3640972 KEGG:cal:CaO19.496 KEGG:cal:CaO19.8126
Uniprot:Q5A6Q9
Length = 923
Score = 391 (142.7 bits), Expect = 1.8e-37, Sum P(2) = 1.8e-37
Identities = 102/311 (32%), Positives = 169/311 (54%)
Query: 445 LFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSL 504
L Y + + ++ +L+ D IL +ER I +L S + + A LD SL
Sbjct: 615 LVYRSTEWNDIQHLILDKKEAILLVERKIIEELKSEVTRRFPEFRELAGLADFLDVTSSL 674
Query: 505 ALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTV-DT---FIPNDTRIDNDGRINIITGP 560
A+VA +NN+ P L P L ++ GRHV+ E ++ D+ FIPND+++ DG + +I+GP
Sbjct: 675 AIVAEENNWTCPKLIKTPRLSVEGGRHVVVESSLKDSGNMFIPNDSKMGTDGTLWVISGP 734
Query: 561 NYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLH 612
N GKS Y++Q ALIV L+ IGSFVPA+ AT+GL D + + + S+FM+++
Sbjct: 735 NMGGKSTYLRQNALIVILAQIGSFVPAEKATIGLVDKIFTRIGATDDLFNDLSTFMVEMV 794
Query: 613 QVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672
+V +L AT SL ++DE G+GT ++G+ + T+ + + + L TH + L
Sbjct: 795 EVSNILTNATPSSLAIVDEIGRGTSGKEGLAIAYATLLSLLQVN-KCRTLFATHFGKELE 853
Query: 673 EGCLPKS---ERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPA 729
+ + + + ++++ VL EN + + V + L PG + S+ L A +AG P
Sbjct: 854 QLLVANNIDQKNIRYFRTRVL--ENGDNE-KGFVIDHTLEPGISERSHALDVARMAGFPE 910
Query: 730 EVIKRAAYVLE 740
+K A VL+
Sbjct: 911 NALKAAEKVLD 921
Score = 93 (37.8 bits), Expect = 1.8e-37, Sum P(2) = 1.8e-37
Identities = 26/100 (26%), Positives = 49/100 (49%)
Query: 173 LKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILD 232
L++D+ EAL++ T++ + GR S+ ++ + T G RLL W P LD
Sbjct: 322 LQMDSRTREALEL--TERTIA----GRTSSVGSLVSVIKRTCTSSGTRLLTEWIKSPSLD 375
Query: 233 LENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKK 272
+++ R + + FL ++ L + L+ + D L+K
Sbjct: 376 TKDIEKRQSFVKMFLKNQHLKIVTRQHLQQLGDFIRNLQK 415
Score = 49 (22.3 bits), Expect = 7.6e-33, Sum P(2) = 7.6e-33
Identities = 22/86 (25%), Positives = 42/86 (48%)
Query: 30 EVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSEESFLSALKRSDGTTEAPTVKLVKSSIFS 89
EV ED+NS + + KY+++ + E+F S +KR D E +K++ +
Sbjct: 499 EVVEDTNSSYTNSFLEKYRSKQE----GNTDAENFYS-VKR-DFNDE---LKILHDELSE 549
Query: 90 YEQAWHRLIYLRVTGMDDGLSIKERI 115
E H+L + ++ + D + +K I
Sbjct: 550 LEVEEHKL-WSKLRNVLDDIDVKLNI 574
>TIGR_CMR|VC_0535 [details] [associations]
symbol:VC_0535 "DNA mismatch repair protein MutS"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
OMA:ITQTVRD PIR:B82312 RefSeq:NP_230186.1 ProteinModelPortal:Q9KUI6
SMR:Q9KUI6 DNASU:2615204 GeneID:2615204 KEGG:vch:VC0535
PATRIC:20080174 Uniprot:Q9KUI6
Length = 862
Score = 351 (128.6 bits), Expect = 5.4e-37, Sum P(2) = 5.4e-37
Identities = 98/288 (34%), Positives = 149/288 (51%)
Query: 465 KILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLL 524
+ L +E+ + +L + + L + A+LD +LA A Y RP L E +
Sbjct: 526 RALALEKQLWEELFDLLMPHLEQLQQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGI 585
Query: 525 DIQNGRH-VLQEMTVDTFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGS 583
IQ GRH V++ + + FI N ++ R+ IITGPN GKS Y++Q ALI ++HIGS
Sbjct: 586 HIQGGRHPVVERVMNEPFIANPIELNPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGS 645
Query: 584 FVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKG 635
+VPA++A++G D S + + +S+FM+++ + +L AT SL L+DE G+G
Sbjct: 646 YVPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRG 705
Query: 636 TLTEDGIGLLGGTINYFVTCDVPPKVLVCTH---LTELLNEGCLPKSERLKFYTMSVLRP 692
T T DG+ L + + ++ L TH LTEL N LP + +
Sbjct: 706 TSTYDGLSLAWASAEWLAK-EIGAMTLFATHYFELTELPN--VLPHLANVHLDAV----- 757
Query: 693 ENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLE 740
E+ + I F++ + G A SYGL A LAGVP VIK A L+
Sbjct: 758 EHG----DGIAFMHAVQEGAASKSYGLAVAGLAGVPKPVIKNARAKLQ 801
Score = 130 (50.8 bits), Expect = 5.4e-37, Sum P(2) = 5.4e-37
Identities = 50/179 (27%), Positives = 76/179 (42%)
Query: 209 MMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPH 268
+++ C TPMG R+L+ W +P+ D LN RL+AI+ L L LH LK + DI
Sbjct: 299 VLDHCATPMGSRMLKRWIHQPMRDNATLNQRLDAITE-LKETALYGELHPVLKQIGDIER 357
Query: 269 ILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASC 328
IL + S D ++ L ++ + +SE + L L C
Sbjct: 358 ILARLALRSA--RPRDLARLRHAMQQLPELHSV----MSELKQPHLTELRTHAEPMDELC 411
Query: 329 ITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLE 387
E A + I D G ++ +G+ ELDE R + EFLE + + E
Sbjct: 412 DLLERAIKENPPVVIRD---------GGVIADGYSAELDEWRDLANGATEFLERLEAEE 461
Score = 46 (21.3 bits), Expect = 3.4e-28, Sum P(2) = 3.4e-28
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 365 ELDELRQIYEELPEFLEEVASLELVQLPHL 394
+L LR ++LPE L V S EL Q PHL
Sbjct: 371 DLARLRHAMQQLPE-LHSVMS-ELKQ-PHL 397
Score = 37 (18.1 bits), Expect = 3.0e-27, Sum P(2) = 3.0e-27
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 452 TRELDNLLGDIYH 464
+ +DNL+ IYH
Sbjct: 131 SERVDNLIAAIYH 143
>UNIPROTKB|F1PM37 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032301 "MutSalpha complex" evidence=IEA] [GO:0030983
"mismatched DNA binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GO:GO:0032301 KO:K08735 OMA:WAISEHI GO:GO:0032302 CTD:4436
GeneTree:ENSGT00550000074867 EMBL:AAEX03007498 EMBL:AAEX03007499
EMBL:AAEX03007500 RefSeq:XP_538482.2 Ensembl:ENSCAFT00000004191
GeneID:494002 KEGG:cfa:494002 Uniprot:F1PM37
Length = 934
Score = 432 (157.1 bits), Expect = 7.4e-37, Sum P(3) = 7.4e-37
Identities = 180/654 (27%), Positives = 300/654 (45%)
Query: 118 LNSMMDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDA 177
+NS + E QV AS L AV++ ++ + G +T ++++KLD
Sbjct: 253 VNSAVLPEMENQVAASA-LSAVIKFLELLS--DDSNFGQYELTT-----FDFSQYMKLDI 304
Query: 178 TAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLN 237
A AL +FQ + G S+ ++NKC TP G+RL+ W +P++D +
Sbjct: 305 AAVRALNLFQGSVEDT---TGSQ----SLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIE 357
Query: 238 SRLNAISFFLCSEELMASLHETL-KYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLL 296
RLN + F+ EL SL E L + D+ + KKF + D + I L
Sbjct: 358 ERLNLVEAFVEDAELRQSLQEDLLRRFPDLNRLAKKFQRQAA--NLQDCYRLYQGINQLP 415
Query: 297 HVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGT 356
+V + E E + L L F V + ++ + E++ +D+++ + +
Sbjct: 416 NVIRALEK--YEGKHQGLLLAVF--VTPLID-LRSDFSKFQEMIETTLDMDQVENHEF-- 468
Query: 357 LVREGFCDELDELRQIYEELPEFLEEV---ASLELVQLPHLCKEMFVPCIVYIHQIGYLM 413
LV+ F L ELR+I ++L + ++ A+ +L P K++ + Q GY
Sbjct: 469 LVKPSFDPNLSELREIMDDLEKKMQSTLISAARDLGLDPG--KQIKLDSSA---QFGYYF 523
Query: 414 CIF--EEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMER 471
+ EEK+ L + F S +D + + + K L+ + + +
Sbjct: 524 RVTCKEEKV----LRNNKNF----STVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQD 575
Query: 472 AITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNN--YMRPILTLEP---LLDI 526
AI +++V+ + + + + A+LD +S A V++ Y+RP++ LE + +
Sbjct: 576 AIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPVI-LEKGQGRITL 634
Query: 527 QNGRHVLQEMTVDT-FIPNDTRIDNDGRI-NIITGPNYSGKSIYIKQVALIVFLSHIGSF 584
+ RH E+ + FIPND + D ++ +IITGPN GKS YI+Q +IV ++ IG F
Sbjct: 635 KASRHACVEVQDEVAFIPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCF 694
Query: 585 VPADAATVGLTDS--KHMTAEQS------SFMIDLHQVGMMLRQATSQSLCLLDEFGKGT 636
VP ++A V + D + A S +FM ++ + +LR AT SL ++DE G+GT
Sbjct: 695 VPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGT 754
Query: 637 LTEDGIGLLGGTINYFVTCDVPPKVLVCTH---LTELLNEGCLPKSERLKFYTMSVLRPE 693
T DG GL Y T + + TH LT L N+ +P L ++ L E
Sbjct: 755 STYDGFGLAWAISEYIAT-KIGAFCMFATHFHELTALANQ--IPTVNNLH---VTALTTE 808
Query: 694 NNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVI---KRAAYVLEAAQN 744
E + LY++ G S+G+H A LA P VI K+ A LE QN
Sbjct: 809 ------ETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIECAKQKALELEEFQN 856
Score = 48 (22.0 bits), Expect = 7.4e-37, Sum P(3) = 7.4e-37
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 3 VYMACILHGHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQ 52
V M+ + +VGV Y DS R+L + E + D N F ++ + Q P+
Sbjct: 150 VKMSTVDGQRQVGVGYVDSIQRKLGLCE-FPD-NDQFSNLEALLIQIGPK 197
Score = 37 (18.1 bits), Expect = 7.4e-37, Sum P(3) = 7.4e-37
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 123 DMGSEVQVRASGGLLAVLENER 144
DMG QV GG+L + E +R
Sbjct: 209 DMGKLRQVIQRGGIL-ITERKR 229
>UNIPROTKB|F1NV33 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0019237 "centromeric DNA binding" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0030183 "B cell
differentiation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032143 "single thymine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032405 "MutLalpha complex binding" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IEA] [GO:0051096 "positive
regulation of helicase activity" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006915 GO:GO:0000287 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0016887 GO:GO:0006119 GO:GO:0006298
GO:GO:0019237 GO:GO:0003697 GO:GO:0006302 GO:GO:0010165
GO:GO:0010224 GO:GO:0043570 GO:GO:0045910 GO:GO:0006301
GO:GO:0031573 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0019724 GO:GO:0032137 GO:GO:0032301 GO:GO:0032302
GeneTree:ENSGT00550000074867 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:AADN02036255
IPI:IPI00821163 Ensembl:ENSGALT00000014573 ArrayExpress:F1NV33
Uniprot:F1NV33
Length = 861
Score = 415 (151.1 bits), Expect = 1.9e-36, Sum P(2) = 1.9e-36
Identities = 160/591 (27%), Positives = 278/591 (47%)
Query: 169 LNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLR 228
L++++ LD A +AL +FQ+ + A S+ G++NKC TP G+RL+ W +
Sbjct: 224 LSQYMVLDNAAVQALNLFQSS-------VENANNTQSLAGLLNKCRTPQGQRLVNQWIKQ 276
Query: 229 PILDLENLNSRLNAISFFLCSEELMASLHETL-KYVKDIPHILKKFNSPSFIYTASDWTA 287
P++D + RLN + F+ EL L E L + D+ + KKF + T D
Sbjct: 277 PLMDKNRIEERLNLVEAFVVDTELRQGLQEDLLRRFPDLNRLAKKFQRQAA--TLQDCYR 334
Query: 288 FLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVN 347
++I L +V + E E + L L F I + I ++ + E++ +D++
Sbjct: 335 MYQAINQLPNVVQALEK--HEGAHQMLLLAVF-ITP--LNDIHSDFSKFLEMIETTLDMD 389
Query: 348 RSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIH 407
K + + LV+ F L ELR+ EL E ++ + +L + +
Sbjct: 390 --KVENHEFLVKASFDPNLTELREKMNELEESMQTLLKSAAKELGLEAGKSIK--LESNS 445
Query: 408 QIGY---LMCIFEEKLDDT-----TLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLL 459
Q G+ + C E+ L + T Q G +F S + + K RE
Sbjct: 446 QFGHHFRITCKEEKVLRNNMKYKITDTQKNGVKFTNSKLSAINEEYI----KNREE---- 497
Query: 460 GDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNN--YMRPI 517
Y + D AI +++++ +++ + + A+LD +S A V++ Y+RP+
Sbjct: 498 ---YEEAQD---AIVKEIINIASGYAEPIQTMNDVIAQLDAIVSFAHVSNGAPVPYVRPV 551
Query: 518 LTLEP---LLDIQNGRHVLQEMTVDT-FIPNDTRIDNDGRI-NIITGPNYSGKSIYIKQV 572
+ LE + ++ RH E+ + FIPND + ++ +IITGPN GKS YI+Q
Sbjct: 552 I-LEKGQGRIVLKGARHPCIEVQDEVAFIPNDVTFEKGKQMFHIITGPNMGGKSTYIRQT 610
Query: 573 ALIVFLSHIGSFVPADAATVGLTDS--KHMTAEQS------SFMIDLHQVGMMLRQATSQ 624
+IV ++ IG FVP ++A + + D + A S +FM ++ + +LR A+
Sbjct: 611 GVIVLMAQIGCFVPCNSAEITIVDCILARVGAGDSQLKGVSTFMAEMLETASILRTASEN 670
Query: 625 SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKF 684
SL ++DE G+GT T DG GL I+ ++ + + TH EL L ++++
Sbjct: 671 SLIIIDELGRGTSTYDGFGL-AWAISEYIASKICAFCMFATHFHELT---AL--ADQVP- 723
Query: 685 YTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRA 735
T++ L ++D + + LYR+ G S+G+H A LA P VI+ A
Sbjct: 724 -TVNNLHVTALTSD-DTLTMLYRVKAGVCDQSFGIHVAELAAFPKHVIESA 772
Score = 56 (24.8 bits), Expect = 1.9e-36, Sum P(2) = 1.9e-36
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 11 GHRV-GVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQ 52
G RV GV Y D+++R+L V E + D N F ++ + Q P+
Sbjct: 85 GQRVIGVGYVDTTLRKLSVCE-FPD-NDQFSNLEALLVQLGPK 125
>UNIPROTKB|F1NFH4 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0019237 "centromeric DNA binding" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0030183 "B cell
differentiation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032143 "single thymine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032405 "MutLalpha complex binding" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IEA] [GO:0051096 "positive
regulation of helicase activity" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006915 GO:GO:0000287 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0016887 GO:GO:0006119 GO:GO:0006298
GO:GO:0019237 GO:GO:0003697 GO:GO:0006302 GO:GO:0010165
GO:GO:0010224 GO:GO:0043570 GO:GO:0045910 GO:GO:0006301
GO:GO:0031573 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0019724 GO:GO:0032137 GO:GO:0032301 OMA:WAISEHI GO:GO:0032302
GeneTree:ENSGT00550000074867 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:AADN02036255
IPI:IPI00601005 Ensembl:ENSGALT00000039639 ArrayExpress:F1NFH4
Uniprot:F1NFH4
Length = 866
Score = 415 (151.1 bits), Expect = 2.0e-36, Sum P(2) = 2.0e-36
Identities = 160/591 (27%), Positives = 278/591 (47%)
Query: 169 LNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLR 228
L++++ LD A +AL +FQ+ + A S+ G++NKC TP G+RL+ W +
Sbjct: 229 LSQYMVLDNAAVQALNLFQSS-------VENANNTQSLAGLLNKCRTPQGQRLVNQWIKQ 281
Query: 229 PILDLENLNSRLNAISFFLCSEELMASLHETL-KYVKDIPHILKKFNSPSFIYTASDWTA 287
P++D + RLN + F+ EL L E L + D+ + KKF + T D
Sbjct: 282 PLMDKNRIEERLNLVEAFVVDTELRQGLQEDLLRRFPDLNRLAKKFQRQAA--TLQDCYR 339
Query: 288 FLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVN 347
++I L +V + E E + L L F I + I ++ + E++ +D++
Sbjct: 340 MYQAINQLPNVVQALEK--HEGAHQMLLLAVF-ITP--LNDIHSDFSKFLEMIETTLDMD 394
Query: 348 RSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIH 407
K + + LV+ F L ELR+ EL E ++ + +L + +
Sbjct: 395 --KVENHEFLVKASFDPNLTELREKMNELEESMQTLLKSAAKELGLEAGKSIK--LESNS 450
Query: 408 QIGY---LMCIFEEKLDDT-----TLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLL 459
Q G+ + C E+ L + T Q G +F S + + K RE
Sbjct: 451 QFGHHFRITCKEEKVLRNNMKYKITDTQKNGVKFTNSKLSAINEEYI----KNREE---- 502
Query: 460 GDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNN--YMRPI 517
Y + D AI +++++ +++ + + A+LD +S A V++ Y+RP+
Sbjct: 503 ---YEEAQD---AIVKEIINIASGYAEPIQTMNDVIAQLDAIVSFAHVSNGAPVPYVRPV 556
Query: 518 LTLEP---LLDIQNGRHVLQEMTVDT-FIPNDTRIDNDGRI-NIITGPNYSGKSIYIKQV 572
+ LE + ++ RH E+ + FIPND + ++ +IITGPN GKS YI+Q
Sbjct: 557 I-LEKGQGRIVLKGARHPCIEVQDEVAFIPNDVTFEKGKQMFHIITGPNMGGKSTYIRQT 615
Query: 573 ALIVFLSHIGSFVPADAATVGLTDS--KHMTAEQS------SFMIDLHQVGMMLRQATSQ 624
+IV ++ IG FVP ++A + + D + A S +FM ++ + +LR A+
Sbjct: 616 GVIVLMAQIGCFVPCNSAEITIVDCILARVGAGDSQLKGVSTFMAEMLETASILRTASEN 675
Query: 625 SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKF 684
SL ++DE G+GT T DG GL I+ ++ + + TH EL L ++++
Sbjct: 676 SLIIIDELGRGTSTYDGFGL-AWAISEYIASKICAFCMFATHFHELT---AL--ADQVP- 728
Query: 685 YTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRA 735
T++ L ++D + + LYR+ G S+G+H A LA P VI+ A
Sbjct: 729 -TVNNLHVTALTSD-DTLTMLYRVKAGVCDQSFGIHVAELAAFPKHVIESA 777
Score = 56 (24.8 bits), Expect = 2.0e-36, Sum P(2) = 2.0e-36
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 11 GHRV-GVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQ 52
G RV GV Y D+++R+L V E + D N F ++ + Q P+
Sbjct: 90 GQRVIGVGYVDTTLRKLSVCE-FPD-NDQFSNLEALLVQLGPK 130
>UNIPROTKB|Q7NLT8 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:251221 "Gloeobacter violaceus PCC 7421" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:BA000045 GenomeReviews:BA000045_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:NP_923979.1 ProteinModelPortal:Q7NLT8
GeneID:2599151 KEGG:gvi:gvip140 PATRIC:22041477
BioCyc:GVIO251221:GH9A-1085-MONOMER Uniprot:Q7NLT8
Length = 890
Score = 367 (134.2 bits), Expect = 2.6e-36, Sum P(2) = 2.6e-36
Identities = 123/407 (30%), Positives = 193/407 (47%)
Query: 355 GTLVREGFCDELDELR-QIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLM 413
G L+R G EL+ +R Q+ E+ ++L ++ + E + + + + GY +
Sbjct: 490 GGLIRAGVHPELEGMRGQLIEDR-DWLVDLEARERARTGIQTLK-----VGFNKAFGYYL 543
Query: 414 CIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAI 473
I K + E L+ + E + Y TP+ +E + + + + +E I
Sbjct: 544 SISRGKAEKAPPEYLRK-----QTLTNEER---YITPELKERETRILNAQQQTNQLEYDI 595
Query: 474 TRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVL 533
L L + A LD LA VA ++Y RP+L + I+ GRH +
Sbjct: 596 FNILRQEAGRHVSALRQVARRVAALDALAGLAEVAVYHDYCRPVLGEGREVHIEAGRHPV 655
Query: 534 QEMTVDT--FIPNDTRIDNDGR--INIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADA 589
E + F+PND R+ + + I+TGPN SGKS +I+QVALI L+ +G+FVPA
Sbjct: 656 IEQAIPAGFFVPNDARMGAEAEPDLIILTGPNMSGKSSFIRQVALIQLLAQVGAFVPARG 715
Query: 590 ATVGLTDS--------KHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDG 641
A +G+ D + QS+FM+++ + +L AT +SL LLDE G+GT T DG
Sbjct: 716 AVLGVADRIFTRVGAVDDLATGQSTFMVEMTETANILNHATPRSLVLLDEIGRGTATFDG 775
Query: 642 IGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVED 701
+ + Y + + + + TH EL NE L V + ++ D
Sbjct: 776 LAIAWAVAEYLAS-HIRCRTIFATHYHEL-NE--------LASVVSGVANYQVTVQELAD 825
Query: 702 -IVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKH 747
IVFL+R+ PG A SYG+ LAG+P V+ RA VL AQ +H
Sbjct: 826 RIVFLHRVTPGGADRSYGIEVGRLAGLPPSVVARARTVL--AQVEQH 870
Score = 107 (42.7 bits), Expect = 2.6e-36, Sum P(2) = 2.6e-36
Identities = 40/159 (25%), Positives = 72/159 (45%)
Query: 137 LAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMG 196
LAV +V L + + G SI ++ + +L+++L LD L++ QT + + G
Sbjct: 296 LAVRAAGGLVQHLLETQRG-VSIPLEGIRTYTLSQYLILDHQTRRNLELTQTVRDGAQYG 354
Query: 197 IGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASL 256
S+ +++ T MG R LR W L+P+LD + R ++++ L L
Sbjct: 355 --------SLLWALDRTRTVMGGRALRRWLLQPLLDTRAIGRRQDSVAELYDEGLLRERL 406
Query: 257 HETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSL 295
L+ V D+ + + S + A D A +S+ L
Sbjct: 407 QRILESVYDLERLAGRCGSGTA--NARDLVALGESLLKL 443
>DICTYBASE|DDB_G0275809 [details] [associations]
symbol:msh2 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0032302 "MutSbeta complex"
evidence=IEA;ISS;IBA] [GO:0032301 "MutSalpha complex"
evidence=IEA;ISS;IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;ISS] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0042803 "protein
homodimerization activity" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0006301 "postreplication repair"
evidence=ISS;IBA] [GO:0006281 "DNA repair" evidence=IEA;ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0045128
"negative regulation of reciprocal meiotic recombination"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF05188 Pfam:PF05190
Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 dictyBase:DDB_G0275809 GO:GO:0005524 GO:GO:0042803
GO:GO:0003684 GenomeReviews:CM000151_GR EMBL:AAFI02000013
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 KO:K08735 OMA:WAISEHI
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 RefSeq:XP_643399.1
HSSP:P23909 ProteinModelPortal:Q553L4 STRING:Q553L4 PRIDE:Q553L4
EnsemblProtists:DDB0229897 GeneID:8619985 KEGG:ddi:DDB_G0275809
ProtClustDB:CLSZ2430933 Uniprot:Q553L4
Length = 937
Score = 423 (154.0 bits), Expect = 2.6e-36, P = 2.6e-36
Identities = 177/637 (27%), Positives = 295/637 (46%)
Query: 169 LNKFLKLDATAHEALQIFQT-DKHPSHM----GIGRAKEGF----SVFGMMNKCVTPMGR 219
L++++KLD+++ + L I D S G G A S++ ++N+C TPMG
Sbjct: 314 LDRYMKLDSSSFKGLHIIDLKDSSVSAAAGGGGAGGASSSSNKDQSLYNLLNQCNTPMGS 373
Query: 220 RLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHET-LKYVKDIPHILKKFNSPSF 278
RLL W +P+L+ E + +RLN + F EL SL LK + D+ + KK +
Sbjct: 374 RLLLQWVKQPLLNAEEIEARLNFVEAFYNDLELRQSLRSNDLKKIGDLDRLSKKLHGQKA 433
Query: 279 IYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYE 338
T D L I + L V + + S+ ++L +NF +E S I+ + A
Sbjct: 434 --TLEDCVN-LYGIVTRLPV-VLQSLNNHSSIHQELIKVNF--IESLESIIS-DFAKFCA 486
Query: 339 LVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEM 398
+V ID++ + +K + ++R F + L ++ +++ +E +++ +L E
Sbjct: 487 MVEKTIDLDLANDK-HEYVIRSSFDETLRGIQLKKDQISNKIERFR-VDIADDLNL-DEA 543
Query: 399 FVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNL 458
V + Y + +L+ I + D+ + + + + DG F TRE+D L
Sbjct: 544 KVK-LHYSEKDMFLLRI--SRKDEVAIRDKKKYIVHATAKDGVR---F----ATREIDTL 593
Query: 459 LGDIYHK----ILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAH--QNN 512
+ Y K LD + + + + F + + A LD F++L+ V+
Sbjct: 594 -NEAYKKWSAEYLDKQDGLAKRTLQIAASFVPLIEDLSSLIATLDVFVTLSHVSSIAPIP 652
Query: 513 YMRPILTLEPLLDIQNG--------RHVLQEMTVDT-FIPNDTRIDN-DGRINIITGPNY 562
++RP + PL +NG RH E+ + FI ND + + IITGPN
Sbjct: 653 FIRPEII--PLGSDENGAGTVIIGGRHPCVEIQDNVNFIANDIDLTRGQSQFQIITGPNM 710
Query: 563 SGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD---SKHMTAEQ-----SSFMIDLHQV 614
GKS +I+QV LIV ++ IG FVPA AT+ + D S+ + S+FM ++ +
Sbjct: 711 GGKSTFIRQVGLIVLMAQIGCFVPAQKATIAVVDCILSRVGAGDSQLRGVSTFMAEMLET 770
Query: 615 GMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTEL-LNE 673
+L+ AT SL ++DE G+GT T DG GL G Y + L TH EL +
Sbjct: 771 SYILKVATKNSLIIIDELGRGTSTYDGFGLAWGIAEYICN-QIGGFCLFATHFHELTILS 829
Query: 674 GCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIK 733
LP + L + +NN+ LY++ G S+G+H A+LA P++VI+
Sbjct: 830 DLLPMVKNLHVSAST----QNNT-----FTLLYKVEQGPCDQSFGIHVAILANFPSQVIE 880
Query: 734 RA---AYVLEA------AQN-NKHVERWSHENISAQD 760
A A LE+ QN NK +E + N ++ D
Sbjct: 881 NAKQKAKELESFESNTLKQNHNKFLEEFKEINFNSND 917
>UNIPROTKB|Q3MHE4 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9913
"Bos taurus" [GO:0045190 "isotype switching" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] [GO:0042771 "intrinsic apoptotic signaling
pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0032301 "MutSalpha complex" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IBA] [GO:0010224
"response to UV-B" evidence=IBA] [GO:0010165 "response to X-ray"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0006302 "double-strand break repair" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0051096 "positive regulation of
helicase activity" evidence=IEA] [GO:0043531 "ADP binding"
evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0032405 "MutLalpha complex binding"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032181 "dinucleotide repeat insertion binding"
evidence=IEA] [GO:0032143 "single thymine insertion binding"
evidence=IEA] [GO:0032142 "single guanine insertion binding"
evidence=IEA] [GO:0030183 "B cell differentiation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0008584 "male gonad
development" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0006119
"oxidative phosphorylation" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0000287
GO:GO:0003684 GO:GO:0001701 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0006119 GO:GO:0008584 GO:GO:0019237
GO:GO:0003697 GO:GO:0007281 GO:GO:0030183 GO:GO:0006302
GO:GO:0045190 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 EMBL:BC105268 IPI:IPI00904469
RefSeq:NP_001029756.1 UniGene:Bt.635 ProteinModelPortal:Q3MHE4
SMR:Q3MHE4 STRING:Q3MHE4 PRIDE:Q3MHE4 Ensembl:ENSBTAT00000003556
GeneID:533115 KEGG:bta:533115 CTD:4436 GeneTree:ENSGT00550000074867
HOVERGEN:HBG006399 OrthoDB:EOG4D26P5 NextBio:20875918 GO:GO:0032181
GO:GO:0032357 GO:GO:0032142 GO:GO:0032143 GO:GO:0051096
Uniprot:Q3MHE4
Length = 934
Score = 423 (154.0 bits), Expect = 4.0e-36, Sum P(3) = 4.0e-36
Identities = 167/602 (27%), Positives = 278/602 (46%)
Query: 170 NKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRP 229
++++KLD A AL +FQ + G S+ ++NKC TP G+RL+ W +P
Sbjct: 297 SQYMKLDIAAVRALNLFQGSVEDTS---GSQ----SLAALLNKCKTPQGQRLVNQWIKQP 349
Query: 230 ILDLENLNSRLNAISFFLCSEELMASLHETL-KYVKDIPHILKKFNSPSFIYTASDWTAF 288
++D + RLN + F+ EL +L E L + D+ + KKF + D
Sbjct: 350 LMDKNRIEERLNLVEAFVEDAELRQNLQEDLLRRFPDLNRLAKKFQRQAA--NLQDCYRL 407
Query: 289 LKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNR 348
+ I L +V + E E + L L F V + ++ + E++ +D+++
Sbjct: 408 YQGINQLPNVIQALEK--YEGKHQALFLAVF--VTPLID-LRSDFSKFQEMIETTLDMDQ 462
Query: 349 SKEKGYGTLVREGFCDELDELRQIYEELPEFLEEV---ASLELVQLPHLCKEMFVPCIVY 405
+ + LV+ F L ELR+I ++L + ++ A+ +L P K++ +
Sbjct: 463 VENHEF--LVKPSFDPNLSELREIMDDLEKKMQSTLVSAARDLGLDPG--KQIKLDSST- 517
Query: 406 IHQIGYLMCIF--EEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIY 463
Q GY + EEK+ L + F S +D + + + K L+
Sbjct: 518 --QFGYYFRVTCKEEKV----LRNNKNF----STVDIQKNGVKFTNSKLTSLNEEYTKNK 567
Query: 464 HKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALV--AHQNNYMRPILTLE 521
+ + + AI +++V+ + + + + A+LD +S A V A Y+RP++ LE
Sbjct: 568 TEYEEAQNAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSDAAPVPYVRPVI-LE 626
Query: 522 P---LLDIQNGRHVLQEMTVDT-FIPNDTRIDNDGRI-NIITGPNYSGKSIYIKQVALIV 576
+ ++ RH E+ + FIPND + D ++ +IITGPN GKS YI+Q ++V
Sbjct: 627 KGRGRITLKASRHACVEVQDEVAFIPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVVV 686
Query: 577 FLSHIGSFVPADAATVGLTDS--KHMTAEQS------SFMIDLHQVGMMLRQATSQSLCL 628
++ IG FVP + A V + D + A S +FM ++ + +LR AT SL +
Sbjct: 687 LMAQIGCFVPCEWAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLII 746
Query: 629 LDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTH---LTELLNEGCLPKSERLKFY 685
+DE G+GT T DG GL Y T + + TH LT L N+ +P L
Sbjct: 747 IDELGRGTSTYDGFGLAWAISEYIAT-KIGAFCMFATHFHELTALANQ--IPTVNNLH-- 801
Query: 686 TMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVI---KRAAYVLEAA 742
++ L E E + LY++ G S+G+H A LA P VI K+ A LE
Sbjct: 802 -VTALTTE------ETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIECAKQKALELEEF 854
Query: 743 QN 744
QN
Sbjct: 855 QN 856
Score = 51 (23.0 bits), Expect = 4.0e-36, Sum P(3) = 4.0e-36
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 3 VYMACILHGHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQ 52
V M+ + +VGV Y DS+ R+L + E + D N F ++ + Q P+
Sbjct: 150 VKMSTVDGQRQVGVGYVDSTQRKLGLCE-FPD-NDQFSNLEALLIQIGPK 197
Score = 37 (18.1 bits), Expect = 4.0e-36, Sum P(3) = 4.0e-36
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 123 DMGSEVQVRASGGLLAVLENER 144
DMG QV GG+L + E +R
Sbjct: 209 DMGKLRQVIQRGGIL-ITERKR 229
>TIGR_CMR|ECH_0824 [details] [associations]
symbol:ECH_0824 "DNA mismatch repair protein MutS"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0005524
"ATP binding" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:YP_507620.1
ProteinModelPortal:Q2GG13 STRING:Q2GG13 GeneID:3926941
KEGG:ech:ECH_0824 PATRIC:20577070
BioCyc:ECHA205920:GJNR-827-MONOMER Uniprot:Q2GG13
Length = 804
Score = 369 (135.0 bits), Expect = 6.5e-36, Sum P(2) = 6.5e-36
Identities = 98/309 (31%), Positives = 161/309 (52%)
Query: 447 YHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLAL 506
Y T + + L++ + +++E I L + I +D + + AE+D S A
Sbjct: 503 YTTSELKALESKIISARDAAINLEVKIFGQLCTCIIEVADKITMTAHAIAEIDMLTSFAE 562
Query: 507 VAHQNNYMRPILTLEPLLDIQNGRHVLQEMTVDTFIPNDTRIDNDGRINIITGPNYSGKS 566
+A Q +Y +PI+ +I+ GRH + E F+ ND + R+++ITGPN +GKS
Sbjct: 563 LAIQYSYTKPIVDDSYEFNIKKGRHPVVERN-GKFVANDIDLSLMQRVHLITGPNMAGKS 621
Query: 567 IYIKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMML 618
+++Q ALI L+HIGSFVPA A +G+ D S ++ + S+FM+++ + ++
Sbjct: 622 TFLRQNALIGILAHIGSFVPAQHAHIGVIDKVFSRVGASDNIASGHSTFMVEMTETAAII 681
Query: 619 RQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPK 678
QAT +S +LDE G+GT T DG+ + I + + + TH EL L +
Sbjct: 682 NQATDKSFVILDEIGRGTGTYDGLSIAWSVIEQIHNVN-KSRAIFATHYHELSK---LDR 737
Query: 679 S-ERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAY 737
E +K + M V E N +VFL+ ++PG SYG+H A LAG P V+ RA
Sbjct: 738 YLENIKCFCMKV--EEWNGK----VVFLHEIIPGSTNKSYGIHVAKLAGFPQSVLDRAED 791
Query: 738 VLEAAQNNK 746
++ + N+
Sbjct: 792 LMSKLKANE 800
Score = 99 (39.9 bits), Expect = 6.5e-36, Sum P(2) = 6.5e-36
Identities = 37/134 (27%), Positives = 58/134 (43%)
Query: 168 SLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFL 227
S F+ +DA A L++F T G EG S+ ++ +T G RLL+
Sbjct: 262 SKGDFMFIDAAALRNLELFCTQS-------GDL-EG-SLISSIDYTITACGGRLLKRCLS 312
Query: 228 RPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFN----SPSFIYTAS 283
P+ +N RL+ + FF+ L + ETL+ + DI IL + SP +Y
Sbjct: 313 APLACSHAINRRLDIVEFFVNDRTLCRGVRETLRGIADIERILTRIKVGKCSPKDLYALK 372
Query: 284 DWTAFLKSICSLLH 297
+ + LLH
Sbjct: 373 LTLDKIFVLLDLLH 386
Score = 45 (20.9 bits), Expect = 3.0e-30, Sum P(2) = 3.0e-30
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 227 LRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNS 275
LR I D+E + +R+ CS + + +L TL + + +L KF+S
Sbjct: 345 LRGIADIERILTRIKVGK---CSPKDLYALKLTLDKIFVLLDLLHKFDS 390
>UNIPROTKB|Q759V4 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein MSH3"
species:284811 "Ashbya gossypii ATCC 10895" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0005737 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0008094 EMBL:AE016817 GenomeReviews:AE016817_GR
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710 HSSP:Q56215
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GO:GO:0000735 KO:K08736 OMA:KRTKSIY
RefSeq:NP_984265.1 ProteinModelPortal:Q759V4 STRING:Q759V4
EnsemblFungi:AAS52089 GeneID:4620427 KEGG:ago:AGOS_ADR168C
HOGENOM:HOG000057130 OrthoDB:EOG42NN7M PhylomeDB:Q759V4
Uniprot:Q759V4
Length = 1032
Score = 387 (141.3 bits), Expect = 1.6e-35, Sum P(3) = 1.6e-35
Identities = 105/302 (34%), Positives = 157/302 (51%)
Query: 447 YHTPKTRELDNLLGDIYHKILDMERAITR--DLVSHICLFSDHLLKAVNFAAELDCFLSL 504
+ TP T +L L YHK L + A+ + I L KA+ + DC LSL
Sbjct: 682 FQTPGTAKLVAKLQ--YHKELLQDLALQEYESFIKRITGEYTSLRKAILHLSTYDCILSL 739
Query: 505 ALVAHQNNYMRPILTLEP-LLDIQNGRHVLQEMTVDTFIPNDTRIDNDGR-INIITGPNY 562
A + +Y+RP P +++ NGR+ + E ++PND ++ +G+ I IITGPN
Sbjct: 740 AATSCNVDYVRPKFNTAPQCINVINGRNPIIESLDVRYMPNDVNLNREGKKIMIITGPNM 799
Query: 563 SGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS--------KHMTAEQSSFMIDLHQV 614
GKS YI+QVAL+V ++ IG +VPA A + D ++ S+F I++ ++
Sbjct: 800 GGKSSYIRQVALLVIMAQIGCYVPAQEAEFSIFDQIFTRIGAYDNLLRNDSTFKIEMTEM 859
Query: 615 GMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTC-DVPPKVLVCTHLTELLNE 673
+LR +T SL LLDE G+GT T DGI + + YF+ + P +L TH L
Sbjct: 860 VQILRSSTENSLLLLDEVGRGTGTHDGISISYALLRYFIELHNACPLILFITHYASL--- 916
Query: 674 GCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIK 733
G + +S L Y MS + + + +VFLY+L G A SYGL+ A LA + +I
Sbjct: 917 GSI-RSPILGNYHMSYIEEKRPGENWPSVVFLYKLKEGRAHNSYGLNVAKLADIQTGIIN 975
Query: 734 RA 735
RA
Sbjct: 976 RA 977
Score = 85 (35.0 bits), Expect = 1.6e-35, Sum P(3) = 1.6e-35
Identities = 25/100 (25%), Positives = 49/100 (49%)
Query: 175 LDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLE 234
L ++A E+L IF+ S G S+ +++ T G R L+NW +P+++++
Sbjct: 423 LPSSAIESLDIFENSTDRSSKG--------SLLWVLDHTRTNYGLRNLKNWIAKPLINID 474
Query: 235 NLNSRLNAISFFLCS--EELMASLHETLKYVKDIPHILKK 272
+ RL+A+ + SL+ L+ +D+ IL +
Sbjct: 475 QIQQRLDAVQCISTEVGNIFIESLNNMLRDGQDLERILNR 514
Score = 47 (21.6 bits), Expect = 1.4e-31, Sum P(3) = 1.4e-31
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 316 LLNFDIVEK---AASCITTELAYVY-ELVIGII----DVNRSKEK-GYG-TLVREG--FC 363
L+N D +++ A CI+TE+ ++ E + ++ D+ R + YG T RE F
Sbjct: 470 LINIDQIQQRLDAVQCISTEVGNIFIESLNNMLRDGQDLERILNRIAYGKTSRREVYLFL 529
Query: 364 DELDELRQIYEELPEFLE 381
EL +L ++ ++E
Sbjct: 530 RELTQLATLFSSHHRYIE 547
Score = 40 (19.1 bits), Expect = 1.6e-35, Sum P(3) = 1.6e-35
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 58 TKSEESFLSALKRSDGTTEAPTV 80
T EE+ L L SDG + TV
Sbjct: 24 TAKEEAELMQLLESDGENNSATV 46
Score = 40 (19.1 bits), Expect = 1.6e-35, Sum P(3) = 1.6e-35
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 61 EESFLSALKRSDGTTEAPTVKLVKSSIFSYEQAWHRLIYLRVT-GMDDGLSIKER 114
E++ SA+K++ GT+ SS+FS E I+ R T G+++ K+R
Sbjct: 233 EQTETSAVKKNSGTS---------SSVFSREVT---NIFTRATYGINETFGTKDR 275
>SGD|S000002313 [details] [associations]
symbol:MSH5 "Protein of the MutS family" species:4932
"Saccharomyces cerevisiae" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0030983 "mismatched DNA
binding" evidence=IEA;IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] [GO:0032300 "mismatch
repair complex" evidence=IRD] [GO:0003674 "molecular_function"
evidence=ND] [GO:0006298 "mismatch repair" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 SGD:S000002313
GO:GO:0005524 EMBL:BK006938 GO:GO:0006298 GO:GO:0030983 EMBL:X97751
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334 KO:K08741
GeneTree:ENSGT00550000074977 EMBL:L42517 EMBL:Z74202 PIR:S67702
RefSeq:NP_010127.1 ProteinModelPortal:Q12175 DIP:DIP-1457N
IntAct:Q12175 MINT:MINT-388063 STRING:Q12175 PRIDE:Q12175
EnsemblFungi:YDL154W GeneID:851401 KEGG:sce:YDL154W CYGD:YDL154w
HOGENOM:HOG000113662 OMA:SAFMIDL OrthoDB:EOG4W6S4H NextBio:968570
Genevestigator:Q12175 GermOnline:YDL154W Uniprot:Q12175
Length = 901
Score = 412 (150.1 bits), Expect = 3.9e-35, P = 3.9e-35
Identities = 155/513 (30%), Positives = 240/513 (46%)
Query: 161 IDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGF-SVFGMMNKCVTPMGR 219
I + + + + LD AL IF T H + R GF SVF + N+ + R
Sbjct: 235 IHGIRYIDIRDRMVLDENTISALHIFPTAHKLGHDKMMR--NGFFSVFELFNQVSSDYAR 292
Query: 220 RLLRNWFLRPILDLENLNSRLNAISFFLCSEE--LMASLHETLKYVKDIPHILKKFNS-P 276
R+L++W + P+ + + + +R + I L + + + L +++K D + + S
Sbjct: 293 RILKSWLINPLTNKKRIETRYSIIRTLLDKQNAIIFSDLSQSIKRCPDAFGFINQLRSGK 352
Query: 277 SFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYV 336
S + T S +FL+ ++ + ++G E+ +L+ DI K E
Sbjct: 353 STLGTWSKVASFLEKGIAIFQLVSSLKLGSDEA-----NILH-DIKNKVDISALKECLRK 406
Query: 337 YELVIGIIDVNRSKEKGYGTL-VREGFCDELDELRQIYEELPEFLEEVA---SLELVQ-L 391
E VI D +R + TL + G + LDE R IY L L +VA + L+ +
Sbjct: 407 VETVIDF-DTSRDTK----TLTINTGVDNRLDECRNIYNHLEGILLDVARETQIFLLNTM 461
Query: 392 PHL-CK-----EMFVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRL 445
P CK E V VYI Q+GYL+ I L + L+ + ++ ++ ++ +
Sbjct: 462 PQEDCKTTKSLEKLVNA-VYIPQLGYLVTI--SVLMEPLLDGIPNLQW--EEIFRSSENI 516
Query: 446 FYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFA-AELDCFLSL 504
++ + ELD GDIY I D E I L I L L A N +EL+ LS
Sbjct: 517 YFKNGRVLELDETYGDIYGAISDFEIEILFSLQEQI-LRRKTQLTAYNILLSELEILLSF 575
Query: 505 ALVAHQNNYMRPILTL-EPLLDIQNGRHVLQEMTVDTFIPNDTRID------------ND 551
A V+ + NY P L E +L+I NGRH L E +D +IPN T ID N
Sbjct: 576 AQVSAERNYAEPQLVEDECILEIINGRHALYETFLDNYIPNSTMIDGGLFSELSWCEQNK 635
Query: 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDL 611
GRI ++TG N SGKS+Y+ Q LIV+L+ IG FVPA+ A +G+ D K +T ++ +
Sbjct: 636 GRIIVVTGANASGKSVYLTQNGLIVYLAQIGCFVPAERARIGIAD-KILTRIRTQETVYK 694
Query: 612 HQVGMML-RQATSQSLCLLDEFGKGTLTEDGIG 643
Q +L Q ++SL L E + E G G
Sbjct: 695 TQSSFLLDSQQMAKSLSLATEKSLILIDEYGKG 727
Score = 320 (117.7 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 81/249 (32%), Positives = 136/249 (54%)
Query: 550 NDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD---SKHMTAE--- 603
N GRI ++TG N SGKS+Y+ Q LIV+L+ IG FVPA+ A +G+ D ++ T E
Sbjct: 634 NKGRIIVVTGANASGKSVYLTQNGLIVYLAQIGCFVPAERARIGIADKILTRIRTQETVY 693
Query: 604 --QSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKV 661
QSSF++D Q+ L AT +SL L+DE+GKGT DG L G + + P++
Sbjct: 694 KTQSSFLLDSQQMAKSLSLATEKSLILIDEYGKGTDILDGPSLFGSIMLNMSKSEKCPRI 753
Query: 662 LVCTHLTELLNEGCLPKSER-LKFYTMSVLRPENNST----------DVEDIVFLYRLVP 710
+ CTH EL NE L ++ + +K Y +L + + + E I FL+++
Sbjct: 754 IACTHFHELFNENVLTENIKGIKHYCTDILISQKYNLLETAHVGEDHESEGITFLFKVKE 813
Query: 711 GHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERWSHENISAQD----QQYKNA 766
G + S+G++CA + G+ ++++RA + V + N++ ++ Q+ +
Sbjct: 814 GISKQSFGIYCAKVCGLSRDIVERAEELSRMINRGDDVVQQCG-NLTEKEMREFQKNQEI 872
Query: 767 VEKMLAFDV 775
V+K L++D+
Sbjct: 873 VKKFLSWDL 881
>ZFIN|ZDB-GENE-040426-2932 [details] [associations]
symbol:msh2 "mutS homolog 2 (E. coli)"
species:7955 "Danio rerio" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA;IBA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA;ISS] [GO:0032302 "MutSbeta complex"
evidence=IEA;IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IGI;IDA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0010224 "response to UV-B" evidence=IBA] [GO:0031573 "intra-S
DNA damage checkpoint" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0045190 "isotype switching" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0045128 "negative
regulation of reciprocal meiotic recombination" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0042771 "intrinsic apoptotic
signaling pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0006311 "meiotic gene conversion" evidence=IBA] [GO:0016446
"somatic hypermutation of immunoglobulin genes" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
ZFIN:ZDB-GENE-040426-2932 GO:GO:0005524 GO:GO:0042771 GO:GO:0003684
GO:GO:0006302 GO:GO:0045190 GO:GO:0010165 GO:GO:0010224
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0031573 GO:GO:0008094 GO:GO:0006311
GO:GO:0016446 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HOVERGEN:HBG006399
HSSP:P23909 EMBL:AF412833 IPI:IPI00509799 UniGene:Dr.105564
ProteinModelPortal:Q90XA7 SMR:Q90XA7 STRING:Q90XA7
InParanoid:Q90XA7 ArrayExpress:Q90XA7 Uniprot:Q90XA7
Length = 936
Score = 403 (146.9 bits), Expect = 4.1e-35, Sum P(2) = 4.1e-35
Identities = 150/548 (27%), Positives = 252/548 (45%)
Query: 205 SVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETL-KYV 263
S+ G++NKC TP G+RL+ W +P++D + RL+ + F+ EL S E L +
Sbjct: 325 SLAGLLNKCRTPQGQRLVNQWIKQPLIDKNKIEERLDLVETFVEDSELRKSCQEDLLRRF 384
Query: 264 KDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVE 323
D+ + KKF S D +S+ L +V E S + Q+ LL+ +
Sbjct: 385 PDLNRMAKKFQRQSS--NLQDCYRVYQSVGQLPNVVLALE---RYSGKHQV-LLHAAFIS 438
Query: 324 KAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEV 383
I+ + + E++ +D+N+ + + LV+ F L +LR+ + L + ++
Sbjct: 439 PLNDLIS-DFSKFQEMIETTLDMNQVEHHEF--LVKPSFDPTLSDLRENMDRLEKAMQAA 495
Query: 384 ASLELVQLP-HLCKEMFVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGET 442
S L K + + QIGY + + ++ +L + F+ +D +
Sbjct: 496 LSSAARGLGLEATKTVKLESNA---QIGYFFRVTCK--EEKSLRNNK----KFTTLDVQK 546
Query: 443 KRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFL 502
+ + K L+ + + + AI ++++S + D + A+LD +
Sbjct: 547 NGVRFTNSKLSSLNEEYTKSREEYEEAQNAIVKEIISIAAGYVDPVQTLNEVIAQLDAVV 606
Query: 503 SLALVAHQNN--YMRPILTLEP---LLDIQNGRHVLQEMTVDT-FIPND-TRIDNDGRIN 555
S A+V+H ++RP + LE L ++ RH E + FIPND T I + +
Sbjct: 607 SFAVVSHTAPVPFIRPKI-LEKGSGRLVLKAARHPCVEAQDEVAFIPNDVTFISGEKMFH 665
Query: 556 IITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS--KHMTAEQS------SF 607
IITGPN GKS YI+QV +IV ++ IG FVP D A + + D + A S +F
Sbjct: 666 IITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCDEAELSVVDCVLARVGAGDSQIKGVSTF 725
Query: 608 MIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHL 667
M ++ + +LR A+ SL ++DE G+GT T DG GL Y T + L TH
Sbjct: 726 MAEMLETAAILRSASEDSLIIIDELGRGTSTYDGFGLAWAISEYIAT-RLKSFCLFATHF 784
Query: 668 TELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGV 727
EL ++++ T+ L +TD + LY++ G S+G+H A LA
Sbjct: 785 HELT-----ALAQQVP--TVRNLHVTALTTD-STLTMLYKVKKGVCDQSFGIHVAELASF 836
Query: 728 PAEVIKRA 735
P VI A
Sbjct: 837 PKHVIANA 844
Score = 168 (64.2 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 57/218 (26%), Positives = 102/218 (46%)
Query: 169 LNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLR 228
LN++++LD A +AL +FQ A S+ G++NKC TP G+RL+ W +
Sbjct: 296 LNQYMRLDNAAVQALNLFQGS-------CDDATGTHSLAGLLNKCRTPQGQRLVNQWIKQ 348
Query: 229 PILDLENLNSRLNAISFFLCSEELMASLHETL-KYVKDIPHILKKFNSPSFIYTASDWTA 287
P++D + RL+ + F+ EL S E L + D+ + KKF S D
Sbjct: 349 PLIDKNKIEERLDLVETFVEDSELRKSCQEDLLRRFPDLNRMAKKFQRQSS--NLQDCYR 406
Query: 288 FLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVN 347
+S+ L +V E S + Q+ LL+ + I+ + + E++ +D+N
Sbjct: 407 VYQSVGQLPNVVLALE---RYSGKHQV-LLHAAFISPLNDLIS-DFSKFQEMIETTLDMN 461
Query: 348 RSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVAS 385
+ + + LV+ F L +LR+ + L + ++ S
Sbjct: 462 QVEHHEF--LVKPSFDPTLSDLRENMDRLEKAMQAALS 497
Score = 58 (25.5 bits), Expect = 4.1e-35, Sum P(2) = 4.1e-35
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 11 GHRV-GVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQ 52
G RV GV Y DS++R+L V E + D N F ++ + Q P+
Sbjct: 157 GQRVVGVGYVDSTLRKLGVCE-FPD-NDQFSNLEALLVQIGPK 197
>MGI|MGI:101816 [details] [associations]
symbol:Msh2 "mutS homolog 2 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0001701 "in utero embryonic development"
evidence=IGI] [GO:0002204 "somatic recombination of immunoglobulin
genes involved in immune response" evidence=IGI] [GO:0003677 "DNA
binding" evidence=ISO;IMP] [GO:0003684 "damaged DNA binding"
evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IC;IDA] [GO:0006119 "oxidative
phosphorylation" evidence=IMP] [GO:0006200 "ATP catabolic process"
evidence=ISO;IMP] [GO:0006281 "DNA repair" evidence=ISO;IMP]
[GO:0006298 "mismatch repair" evidence=IGI;ISO;IDA;IMP] [GO:0006301
"postreplication repair" evidence=ISO;IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0006311 "meiotic
gene conversion" evidence=IBA] [GO:0006915 "apoptotic process"
evidence=IGI;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0010165 "response to X-ray" evidence=IMP] [GO:0010224 "response
to UV-B" evidence=IMP] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IGI;IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IGI;IMP]
[GO:0016887 "ATPase activity" evidence=IMP] [GO:0019237
"centromeric DNA binding" evidence=IDA] [GO:0019724 "B cell
mediated immunity" evidence=IMP] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0030183 "B cell differentiation" evidence=IMP] [GO:0030983
"mismatched DNA binding" evidence=IMP] [GO:0031573 "intra-S DNA
damage checkpoint" evidence=IGI] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO;IDA] [GO:0032138 "single base
insertion or deletion binding" evidence=IBA] [GO:0032301 "MutSalpha
complex" evidence=ISO;IDA] [GO:0032302 "MutSbeta complex"
evidence=ISO;IBA] [GO:0042771 "intrinsic apoptotic signaling
pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=IMP] [GO:0043570 "maintenance of DNA
repeat elements" evidence=ISO;IBA] [GO:0045128 "negative regulation
of reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=IMP] [GO:0045910 "negative regulation
of DNA recombination" evidence=ISO;IMP] [GO:0051096 "positive
regulation of helicase activity" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 MGI:MGI:101816
GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0042493
GO:GO:0000287 GO:GO:0003684 GO:GO:0001701 GO:GO:0043524
GO:GO:0007050 GO:GO:0043531 GO:GO:0007283 GO:GO:0006119
GO:GO:0008584 GO:GO:0019237 GO:GO:0014070 GO:GO:0003697
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 CTD:4436 HOVERGEN:HBG006399
OrthoDB:EOG4D26P5 GO:GO:0032181 GO:GO:0032357 GO:GO:0032142
GO:GO:0032143 GO:GO:0051096 EMBL:X81143 EMBL:U21011 EMBL:BC047117
IPI:IPI00118158 PIR:S53608 RefSeq:NP_032654.1 UniGene:Mm.4619
ProteinModelPortal:P43247 SMR:P43247 IntAct:P43247 STRING:P43247
PhosphoSite:P43247 PaxDb:P43247 PRIDE:P43247
Ensembl:ENSMUST00000024967 GeneID:17685 KEGG:mmu:17685
InParanoid:P43247 NextBio:292252 Bgee:P43247 CleanEx:MM_MSH2
Genevestigator:P43247 GermOnline:ENSMUSG00000024151 Uniprot:P43247
Length = 935
Score = 407 (148.3 bits), Expect = 5.5e-35, Sum P(3) = 5.5e-35
Identities = 165/602 (27%), Positives = 276/602 (45%)
Query: 170 NKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRP 229
++++KLD A AL +FQ + G S+ ++NKC T G+RL+ W +P
Sbjct: 297 SQYMKLDMAAVRALNLFQGSVEDT---TGSQ----SLAALLNKCKTAQGQRLVNQWIKQP 349
Query: 230 ILDLENLNSRLNAISFFLCSEELMASLHETL-KYVKDIPHILKKFNSPSFIYTASDWTAF 288
++D + RLN + F+ EL SL E L + D+ + KKF + D
Sbjct: 350 LMDRNRIEERLNLVEAFVEDSELRQSLQEDLLRRFPDLNRLAKKFQRQAA--NLQDCYRL 407
Query: 289 LKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNR 348
+ I L V + E E + L L F V + ++ + E++ +D+++
Sbjct: 408 YQGINQLPSVIQALEK--YEGRHQALLLAVF--VTPLID-LRSDFSKFQEMIETTLDMDQ 462
Query: 349 SKEKGYGTLVREGFCDELDELRQIYEELPEFLEEV---ASLELVQLPHLCKEMFVPCIVY 405
+ + LV+ F L ELR++ + L + ++ A+ L P K++ +
Sbjct: 463 VENHEF--LVKPSFDPNLSELREVMDGLEKKMQSTLINAARGLGLDPG--KQIKLDSSA- 517
Query: 406 IHQIGYLMCIF--EEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIY 463
Q GY + EEK+ L + F S +D + + + + L+
Sbjct: 518 --QFGYYFRVTCKEEKV----LRNNKNF----STVDIQKNGVKFTNSELSSLNEEYTKNK 567
Query: 464 HKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNN--YMRPILTLE 521
+ + + AI +++V+ + + + + A LD +S A V++ Y+RP++ LE
Sbjct: 568 GEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAHLDAIVSFAHVSNAAPVPYVRPVI-LE 626
Query: 522 P---LLDIQNGRHVLQEMTVDT-FIPNDTRIDNDGRI-NIITGPNYSGKSIYIKQVALIV 576
+ ++ RH E+ + FIPND + D ++ +IITGPN GKS YI+Q +IV
Sbjct: 627 KGKGRIILKASRHACVEVQDEVAFIPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVIV 686
Query: 577 FLSHIGSFVPADAATVGLTDS--KHMTAEQS------SFMIDLHQVGMMLRQATSQSLCL 628
++ IG FVP ++A V + D + A S +FM ++ + +LR AT SL +
Sbjct: 687 LMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLII 746
Query: 629 LDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTH---LTELLNEGCLPKSERLKFY 685
+DE G+GT T DG GL +Y T + + TH LT L N+ +P L
Sbjct: 747 IDELGRGTSTYDGFGLAWAISDYIAT-KIGAFCMFATHFHELTALANQ--IPTVNNLH-- 801
Query: 686 TMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVI---KRAAYVLEAA 742
++ L E E + LY++ G S+G+H A LA P VI K+ A LE
Sbjct: 802 -VTALTTE------ETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIACAKQKALELEEF 854
Query: 743 QN 744
QN
Sbjct: 855 QN 856
Score = 58 (25.5 bits), Expect = 5.5e-35, Sum P(3) = 5.5e-35
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 1 MQVYMACILHGHR-VGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQ 52
M + MA ++ G R VGV Y DS+ R+L + E E N F ++ + Q P+
Sbjct: 148 MGIKMA-VVDGQRHVGVGYVDSTQRKLGLCEFPE--NDQFSNLEALLIQIGPK 197
Score = 37 (18.1 bits), Expect = 5.5e-35, Sum P(3) = 5.5e-35
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 123 DMGSEVQVRASGGLLAVLENER 144
DMG QV GG+L + E +R
Sbjct: 209 DMGKLRQVIQRGGIL-ITERKR 229
>UNIPROTKB|Q7RQK0 [details] [associations]
symbol:PY01096 "MutS homolog 2-related" species:73239
"Plasmodium yoelii yoelii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000403 "Y-form DNA binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 EMBL:AABL01000289 RefSeq:XP_728672.1
ProteinModelPortal:Q7RQK0 STRING:Q7RQK0 GeneID:3801212
KEGG:pyo:PY01096 EuPathDB:PlasmoDB:PY01096 Uniprot:Q7RQK0
Length = 853
Score = 343 (125.8 bits), Expect = 9.3e-35, Sum P(2) = 9.3e-35
Identities = 98/344 (28%), Positives = 167/344 (48%)
Query: 445 LFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSL 504
+ ++T K R+L + H + + + + + K +++D F S
Sbjct: 474 ILFNTNKLRDLCKQYQYVLHSYNTSQEHLANKAIEVASSYWEPFNKLSKIISQIDIFCSF 533
Query: 505 ALVAHQ--NNYMRPILTLE-PLLDIQNGRHVLQE---MTVDTFIPNDTRIDNDG-RINII 557
A V Q + Y+RPI+ +L+I+N RH L E + + FIPND +D + R+NII
Sbjct: 534 AYVISQCISTYVRPIVEQNGKVLEIKNSRHPLVEANYLQIKNFIPNDIHMDKENNRLNII 593
Query: 558 TGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD-------SKHMTAEQ-SSFMI 609
TGPN GKS YI+Q+A+I ++HIG FVP+ A + + S + + S+F
Sbjct: 594 TGPNMGGKSTYIRQIAIISLMAHIGCFVPSTYAKIPIFSQIMCRIGSSDIQLKGISTFFS 653
Query: 610 DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTE 669
++ +V +++ A S +L ++DE G+GT T +G G+ NY + ++ L TH E
Sbjct: 654 EMIEVSAIIKNADSDTLVIIDELGRGTSTYEGFGISWSVANYLLN-NIKCLCLFATHFHE 712
Query: 670 LLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPA 729
+ N + E V + + + I FLY + G A SYG+H A +A +P
Sbjct: 713 ISNL----EDEHAAVSNNHVSAKIDEAK--KKISFLYEIKKGFADKSYGVHVAQIAKLPQ 766
Query: 730 EVIKRA---AYVLEAAQNNKHVERWSHENISAQDQQYKNAVEKM 770
+VI ++ + LE+ +N + + N +Y A +M
Sbjct: 767 KVIDKSFEKSKELESIENKHYFKNKLKSNNDNNSIEYDKAKTEM 810
Score = 117 (46.2 bits), Expect = 9.3e-35, Sum P(2) = 9.3e-35
Identities = 33/115 (28%), Positives = 57/115 (49%)
Query: 168 SLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFS---------VFGMMNKCVTPMG 218
+++K++KLD A +L I GIG +++ S ++ +NKC T +G
Sbjct: 153 NISKYVKLDKAAICSLNINTYISKEQKNGIGGSQQTLSQNHGGNTMTLYKFLNKCKTKIG 212
Query: 219 RRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLH-ETLKYVKDIPHILKK 272
R L W + PI D + +N RL+ + + L + + E L+ V D+ I+KK
Sbjct: 213 ERKLLKWIMHPIRDEKKINQRLDMVEIMNDDQALRSMIQGEYLRKVCDLDLIIKK 267
Score = 45 (20.9 bits), Expect = 3.2e-27, Sum P(2) = 3.2e-27
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 248 CSEELMASLHETLKYVKDIPHILKKFNS 275
C+ E + L++T+ K+I H L ++N+
Sbjct: 299 CTIEDLVKLYDTVIASKNIYHALDEYNN 326
>UNIPROTKB|Q8F496 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:189518 "Leptospira interrogans serovar Lai str. 56601"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300 OMA:HYFELTV
EMBL:AE010300 GenomeReviews:AE010300_GR KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:NP_712327.1 ProteinModelPortal:Q8F496
PaxDb:Q8F496 GeneID:1151489 KEGG:lil:LA_2146 PATRIC:22385139
BioCyc:LINT189518:GJBB-1740-MONOMER Uniprot:Q8F496
Length = 848
Score = 374 (136.7 bits), Expect = 1.1e-34, Sum P(2) = 1.1e-34
Identities = 113/409 (27%), Positives = 198/409 (48%)
Query: 353 GYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYL 412
G G +++GF +LD+ R+ + +++ ++ + E + + I Y +GY
Sbjct: 408 GNGIFLKKGFSQKLDQAREAGVKGKDWILDLETKEKKRTG-----LNTLKIRYNKIVGYF 462
Query: 413 MCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERA 472
+ I + + + L+ S+ + PK E++ + + I ++ER
Sbjct: 463 IEISRAQAEQAPKDYLKKQTLVGSER--------FTMPKLEEIERTILEADEIIQEIERT 514
Query: 473 ITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHV 532
+V + FS LL +LD +SL + ++RP L+ + LD+ + RH
Sbjct: 515 EFNRMVEEVLKFSSSLLSFSEEIGDLDFQISLLTAKDKFGWIRPKLSEDRSLDLSDSRHP 574
Query: 533 LQEMTV---DTFIPNDTRIDN-DGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPAD 588
+ E T+ FIPN +D D I ++TGPN +GKS +++Q+AL L IG+FVPA
Sbjct: 575 VVEATLPPGQEFIPNSVYLDTQDKAIAVLTGPNMAGKSTFMRQIALNQILFQIGAFVPAK 634
Query: 589 AATVGLTDS--------KHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTED 640
+A + + D ++TA +S+F +++ + +L T SL L DE G+GT T D
Sbjct: 635 SAKLPIVDKLFTRIGAGDNLTAGESTFFVEMKETANILNHYTEDSLILFDEVGRGTSTYD 694
Query: 641 GIGLLGGTINYFVTCDVPPKVLVCTH---LTELLNEGCLPKSERLKFYTMSVLRPENNST 697
G+ + + Y + V PK + TH LTEL G + Y + L E+
Sbjct: 695 GMSIAWSILEYLSSLSVRPKTIFATHYHELTELSRLGGI-----FNLY-LETLEKEDR-- 746
Query: 698 DVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNK 746
++FL ++ G A S+G++ A +AGVP ++KRAA +L ++ K
Sbjct: 747 ----VLFLRKVKVGKAKKSFGIYVAKIAGVPEPIVKRAAELLTDLESKK 791
Score = 83 (34.3 bits), Expect = 1.1e-34, Sum P(2) = 1.1e-34
Identities = 35/137 (25%), Positives = 61/137 (44%)
Query: 167 VSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWF 226
+S KFL++D L++ + +K ++ +++ + N C T G+RLL+
Sbjct: 251 LSSGKFLEMDRETIRNLELVENEKEKNN----------TLYSIFNFCNTAKGKRLLKQRI 300
Query: 227 LRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWT 286
L P D L SR L + ++A LK D+ IL +F + Y D+
Sbjct: 301 LFPECDPVVLYSRWEKQDILL--KTVLAPYITALKDFGDLERILTRFRG-NHAYPR-DFR 356
Query: 287 AFLKSICSLLHVNKIFE 303
+ L SI S + + + E
Sbjct: 357 SLLNSISSGIKLKEELE 373
>CGD|CAL0001526 [details] [associations]
symbol:MSH2 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0032302 "MutSbeta complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0032301
"MutSalpha complex" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000404 "loop DNA binding" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IEA] [GO:0032138 "single base insertion or deletion
binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IEA]
[GO:0006311 "meiotic gene conversion" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0000735 "removal of nonhomologous ends" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 CGD:CAL0001526 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AACQ01000086 EMBL:AACQ01000085
eggNOG:COG0249 SUPFAM:SSF48334 KO:K08735 RefSeq:XP_715402.1
RefSeq:XP_715472.1 ProteinModelPortal:Q5A102 STRING:Q5A102
GeneID:3642853 GeneID:3642939 KEGG:cal:CaO19.10605
KEGG:cal:CaO19.3093 Uniprot:Q5A102
Length = 873
Score = 343 (125.8 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 141/564 (25%), Positives = 247/564 (43%)
Query: 212 KCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILK 271
KC T G RLL W +P++DL + R + + L + E L V DI +LK
Sbjct: 304 KCKTLGGSRLLSQWLKQPLIDLSLIEERQELVKAMIDDTSLRVEIQEFLSKVPDINRLLK 363
Query: 272 KFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITT 331
K + + L + +L + V + +L E +L D K
Sbjct: 364 KIGLG--VKRSGAENKKLNEVVNLYQL-----VSLLPNLTE---ILTIDYYAKPLKKDEQ 413
Query: 332 ELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDEL----RQIYEELPE-FLEEVASL 386
L+ ELV ID++ S +K Y ++ F L E+ ++ + + +LE L
Sbjct: 414 ALSKFCELVETTIDLDTSFDKDYK--IKPDFDPSLSEISNNMESAFKAINDLYLEAGDDL 471
Query: 387 ELVQLPHLCKEMFVPCIVYIHQI-GYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRL 445
L + K + HQ G+ M + +D+ + L+G + + ++ +
Sbjct: 472 NLDTASNKLK-------LEQHQTHGWCMRVTR---NDSRV--LRG-KSQYKELQTVKSGV 518
Query: 446 FYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLA 505
F+ T + + L Y + + + ++++S + L + A LD A
Sbjct: 519 FFTTIEMKRLSQEYTKAYDEYNVKQSEVIKEILSLTLTYEPVLQSLSSTLAHLDVITCFA 578
Query: 506 LVAHQNNYMRP-ILTLEPL--LDIQNGRHVLQEMTVD-TFIPNDTRIDNDGRINIITGPN 561
A N+Y +P + E +++ RH L E+ D FI ND ++D D IITGPN
Sbjct: 579 TTAMLNSYTQPKLFPFESSRKINLIESRHPLLEVQDDINFISNDVKMD-DKHFAIITGPN 637
Query: 562 YSGKSIYIKQVALIVFLSHIGSFVPA-DAATVGLTDS--KHMTAEQS------SFMIDLH 612
GKS YI+Q+ I ++ +GSF+PA D A + + D+ + A S +FMI++
Sbjct: 638 MGGKSTYIRQIGTIALMAQVGSFIPANDGAELPIFDAILSRVGAGDSQLKGLSTFMIEML 697
Query: 613 QVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTEL-- 670
+ +L AT+ SL ++DE G+GT T DG GL + + TH EL
Sbjct: 698 ETSSILATATANSLIIIDELGRGTSTYDGFGLAWAISEELIKRKC--FAVFATHFHELSQ 755
Query: 671 LNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAE 730
L+E K + ++ ++++ + N EDI +Y++ PG + S+G+ A +P +
Sbjct: 756 LSE----KYDGVE--NLNLMAEQTN----EDITLIYKVGPGISNTSFGISVAEKLHMPEK 805
Query: 731 VIKRAAYVLEAAQNNKHVERWSHE 754
++ A +E +++ E
Sbjct: 806 IVNMAKRKVEELSEEPPIKKQCSE 829
Score = 120 (47.3 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 36/114 (31%), Positives = 54/114 (47%)
Query: 162 DSVIEVS---LNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMG 218
D E++ L+ F+KLD++ +AL I P+ G K S+F + KC T G
Sbjct: 261 DKTFEINKYNLSTFMKLDSSTMKALNIL-----PN----GTQKAITSIFELF-KCKTLGG 310
Query: 219 RRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKK 272
RLL W +P++DL + R + + L + E L V DI +LKK
Sbjct: 311 SRLLSQWLKQPLIDLSLIEERQELVKAMIDDTSLRVEIQEFLSKVPDINRLLKK 364
Score = 40 (19.1 bits), Expect = 1.3e-34, Sum P(3) = 1.3e-34
Identities = 15/66 (22%), Positives = 31/66 (46%)
Query: 5 MACILHGHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSEESF 64
+A I G++VGV SI +H+ E +ED+ L ++ +++ + + F
Sbjct: 136 IAAIKLGNKVGVCVIADSI--VHLSE-FEDNELYSNLESLLIQLGVKEVVIPANVDNKKF 192
Query: 65 LSALKR 70
L++
Sbjct: 193 FQMLEK 198
>TAIR|locus:2095097 [details] [associations]
symbol:MSH2 "AT3G18524" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=ISS;IDA] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006200 "ATP catabolic
process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS;IMP] [GO:0006301 "postreplication repair"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IEA;IBA]
[GO:0032302 "MutSbeta complex" evidence=IEA;IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0005515
"protein binding" evidence=IPI] [GO:0030983 "mismatched DNA
binding" evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IMP] [GO:0006290 "pyrimidine dimer repair"
evidence=IMP] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0008283 "cell proliferation"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016570 "histone modification" evidence=RCA] [GO:0031047 "gene
silencing by RNA" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0031507 "heterochromatin assembly"
evidence=RCA] [GO:0045787 "positive regulation of cell cycle"
evidence=RCA] [GO:0048449 "floral organ formation" evidence=RCA]
[GO:0048451 "petal formation" evidence=RCA] [GO:0048453 "sepal
formation" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] [GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005886 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003684 EMBL:AB026658 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 EMBL:AP001303
GO:GO:0008094 GO:GO:0006290 GO:GO:0006311 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 EMBL:AF026549 EMBL:AF109243
EMBL:AF002706 EMBL:AF003005 EMBL:U87911 IPI:IPI00526204
RefSeq:NP_566804.3 UniGene:At.10475 ProteinModelPortal:O24617
SMR:O24617 STRING:O24617 PaxDb:O24617 PRIDE:O24617
EnsemblPlants:AT3G18524.1 GeneID:821383 KEGG:ath:AT3G18524
TAIR:At3g18524 HOGENOM:HOG000196498 InParanoid:O24617 KO:K08735
OMA:WAISEHI PhylomeDB:O24617 ProtClustDB:CLSN2680872
Genevestigator:O24617 GermOnline:AT3G18524 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 Uniprot:O24617
Length = 937
Score = 412 (150.1 bits), Expect = 1.5e-34, Sum P(2) = 1.5e-34
Identities = 152/589 (25%), Positives = 267/589 (45%)
Query: 172 FLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNK-CVTPMGRRLLRNWFLRPI 230
F++LD+ A AL + ++ A + FS+FG+MN+ C MG+RLL W +P+
Sbjct: 293 FMRLDSAAMRALNVMESKTD--------ANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPL 344
Query: 231 LDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLK 290
+DL + +RL+ + F+ L L + LK + D+ +L+ +K
Sbjct: 345 VDLNEIKTRLDIVQCFVEEAGLRQDLRQHLKRISDVERLLRSLER-----RRGGLQHIIK 399
Query: 291 SICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTE-LAYVYELVIGIIDVNRS 349
S + + I + + + E L++ ++K + + L +LV +D+++
Sbjct: 400 LYQSTIRLPFI-KTAMQQYTGEFASLISERYLKKLEALSDQDHLGKFIDLVECSVDLDQL 458
Query: 350 KEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLP-HLCKEMFVPCIVYIHQ 408
+ Y ++ + +L L+ E L + + E+ ++L + K + + Q
Sbjct: 459 ENGEY--MISSSYDTKLASLKDQKELLEQQIHELHKKTAIELDLQVDKALKLDKAA---Q 513
Query: 409 IGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILD 468
G++ I +++ + F + DG K F +T K ++L GD Y ++D
Sbjct: 514 FGHVFRITKKEEPKIRKKLTTQFIVLETRKDG-VK--FTNT-KLKKL----GDQYQSVVD 565
Query: 469 MERAITRDLVSHIC----LFSDHLLKAVNFAAELDCFLSLALVAHQ--NNYMRPILTLEP 522
R+ ++LV + FS+ +E+D LS A +A Y RP +T
Sbjct: 566 DYRSCQKELVDRVVETVTSFSEVFEDLAGLLSEMDVLLSFADLAASCPTPYCRPEITSSD 625
Query: 523 LLDI--QNGRH-VLQEMTVDTFIPNDTRIDNDGR--INIITGPNYSGKSIYIKQVALIVF 577
DI + RH ++ FIPND R+ G+ I+TGPN GKS +I+QV +IV
Sbjct: 626 AGDIVLEGSRHPCVEAQDWVNFIPNDCRLMR-GKSWFQIVTGPNMGGKSTFIRQVGVIVL 684
Query: 578 LSHIGSFVPADAATVGLTDS--KHMTAEQ------SSFMIDLHQVGMMLRQATSQSLCLL 629
++ +GSFVP D A++ + D + A S+FM ++ + +L+ A+ +SL ++
Sbjct: 685 MAQVGSFVPCDKASISIRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGASDKSLIII 744
Query: 630 DEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSV 689
DE G+GT T DG GL + V P L TH EL + + T+ V
Sbjct: 745 DELGRGTSTYDGFGLAWAICEHLVQVKRAP-TLFATHFHELT--ALAQANSEVSGNTVGV 801
Query: 690 LR---PENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRA 735
+ T+ + LY++ PG S+G+H A A P V+ A
Sbjct: 802 ANFHVSAHIDTESRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVALA 850
Score = 43 (20.2 bits), Expect = 1.5e-34, Sum P(2) = 1.5e-34
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 15 GVSYYDSS-IRQLHVLEVWEDSNSDFPLIDIV 45
G DS+ +R L+V+E D+N +F L ++
Sbjct: 292 GFMRLDSAAMRALNVMESKTDANKNFSLFGLM 323
Score = 38 (18.4 bits), Expect = 5.0e-34, Sum P(2) = 5.0e-34
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 14 VGVSYYDSSIRQLHVLEVWEDS 35
+G++Y D + R L + E +DS
Sbjct: 158 IGMAYVDLTRRVLGLAEFLDDS 179
>UNIPROTKB|Q75D87 [details] [associations]
symbol:AGOS_ABR137W "ABR137Wp" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] [GO:0043504
"mitochondrial DNA repair" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0000404 "loop DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0007131 "reciprocal meiotic recombination" evidence=IRD]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005739 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AE016815 GenomeReviews:AE016815_GR GO:GO:0008094
GO:GO:0043504 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000157750
OrthoDB:EOG42591V SUPFAM:SSF53150 GO:GO:0032300 GO:GO:0032139
RefSeq:NP_983084.2 STRING:Q75D87 EnsemblFungi:AAS50908
GeneID:4619194 KEGG:ago:AGOS_ABR137W Uniprot:Q75D87
Length = 955
Score = 351 (128.6 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 102/308 (33%), Positives = 160/308 (51%)
Query: 457 NLLGDIYH----KILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNN 512
N LG H ++LD ER I +L I +S + LD S A++A + N
Sbjct: 655 NELGKAMHLTTLELLDEERYILDNLQRKIITYSTEIRAIAQTVDYLDVLSSFAILASEKN 714
Query: 513 YMRPILTLEPLLDIQNGRHV-----LQEMTVDTFIPNDTRIDNDGRINIITGPNYSGKSI 567
+ P + L+I GRH+ LQ F ND + N G I I+TGPN GKS
Sbjct: 715 LVCPQVDESSALEIVGGRHLVVEDGLQSRAPGNFTANDCSLQN-GDIWIVTGPNMGGKST 773
Query: 568 YIKQVALIVFLSHIGSFVPADAATVGLTD---SKHMTAEQ-----SSFMIDLHQVGMMLR 619
+++Q A+IV L+ IG +VP +A +GL D S+ +A+ S+FM+++ + ML+
Sbjct: 774 FLRQTAIIVILAQIGCYVPCASAHIGLVDKIFSRVGSADDLYNDMSTFMVEMLETSFMLK 833
Query: 620 QATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTH----LTELLNEGC 675
AT +SL +LDE G+GT EDG+G+ T+++ +T + + L +H L+EL+ +
Sbjct: 834 GATKRSLAILDEIGRGTNAEDGVGIAYTTLHHMLTKN-RCRALFASHFGRELSELVEQHL 892
Query: 676 LPKS-ERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKR 734
P + +R+ FY +V E+N D +++ PG L S + A +AG P E +
Sbjct: 893 PPGARKRVHFYRTNVR--EHNGRSFYD----HKITPGICLSSDAIRVAQMAGFPQEALDV 946
Query: 735 AAYVLEAA 742
A VL A+
Sbjct: 947 ARRVLAAS 954
Score = 106 (42.4 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 28/102 (27%), Positives = 49/102 (48%)
Query: 173 LKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILD 232
+++D+ AL++ T + K G S+ + + VTP G RLL W P +
Sbjct: 357 MQIDSRTSAALELHNTFRD-------NLKRG-SLLSAIRRTVTPSGTRLLTQWLSAPSMH 408
Query: 233 LENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFN 274
L+ + R N + F+ + + +L LK D+ IL+KF+
Sbjct: 409 LDEIKQRQNLVRLFMQNPFVTDNLIAQLKATADMTRILQKFS 450
>UNIPROTKB|E9PHA6 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 EMBL:AC079775
SUPFAM:SSF48334 GO:GO:0032301 GO:GO:0032302 EMBL:AC138655
HGNC:HGNC:7325 ChiTaRS:MSH2 IPI:IPI00893933
ProteinModelPortal:E9PHA6 SMR:E9PHA6 Ensembl:ENST00000406134
UCSC:uc002rvz.3 ArrayExpress:E9PHA6 Bgee:E9PHA6 Uniprot:E9PHA6
Length = 921
Score = 401 (146.2 bits), Expect = 5.7e-34, Sum P(2) = 5.7e-34
Identities = 157/566 (27%), Positives = 263/566 (46%)
Query: 205 SVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETL-KYV 263
S+ ++NKC TP G+RL+ W +P++D + RLN + F+ EL +L E L +
Sbjct: 325 SLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRF 384
Query: 264 KDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVE 323
D+ + KKF + D + I L +V + E E ++L L F V
Sbjct: 385 PDLNRLAKKFQRQAA--NLQDCYRLYQGINQLPNVIQALEK--HEGKHQKLLLAVF--VT 438
Query: 324 KAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEV 383
+ ++ + E++ +D+++ + + LV+ F L ELR+I +L + ++
Sbjct: 439 PLTD-LRSDFSKFQEMIETTLDMDQVENHEF--LVKPSFDPNLSELREIMNDLEKKMQST 495
Query: 384 ---ASLELVQLPHLCKEMFVPCIVYIHQIGYLMCIF--EEKLDDTTLEQLQGFEFAFSDM 438
A+ +L P K++ + Q GY + EEK+ L + F S +
Sbjct: 496 LISAARDLGLDPG--KQIKLDSSA---QFGYYFRVTCKEEKV----LRNNKNF----STV 542
Query: 439 DGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAEL 498
D + + + K L+ + + + AI +++V+ + + + + A+L
Sbjct: 543 DIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQL 602
Query: 499 DCFLSLALVAHQNN--YMRPILTLEP---LLDIQNGRHVLQEMTVD-TFIPNDTRIDNDG 552
D +S A V++ Y+RP + LE + ++ RH E+ + FIPND + D
Sbjct: 603 DAVVSFAHVSNGAPVPYVRPAI-LEKGQGRIILKASRHACVEVQDEIAFIPNDVYFEKDK 661
Query: 553 RI-NIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS--KHMTAEQS---- 605
++ +IITGPN GKS YI+Q +IV ++ IG FVP ++A V + D + A S
Sbjct: 662 QMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKG 721
Query: 606 --SFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLV 663
+FM ++ + +LR AT SL ++DE G+GT T DG GL Y T + +
Sbjct: 722 VSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIAT-KIGAFCMF 780
Query: 664 CTH---LTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLH 720
TH LT L N+ +P L ++ L E E + LY++ G S+G+H
Sbjct: 781 ATHFHELTALANQ--IPTVNNLH---VTALTTE------ETLTMLYQVKKGVCDQSFGIH 829
Query: 721 CALLAGVPAEVI---KRAAYVLEAAQ 743
A LA P VI K+ A LE Q
Sbjct: 830 VAELANFPKHVIECAKQKALELEEFQ 855
Score = 165 (63.1 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 55/213 (25%), Positives = 100/213 (46%)
Query: 170 NKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRP 229
++++KLD A AL +FQ + G S+ ++NKC TP G+RL+ W +P
Sbjct: 297 SQYMKLDIAAVRALNLFQGSVEDT---TGSQ----SLAALLNKCKTPQGQRLVNQWIKQP 349
Query: 230 ILDLENLNSRLNAISFFLCSEELMASLHETL-KYVKDIPHILKKFNSPSFIYTASDWTAF 288
++D + RLN + F+ EL +L E L + D+ + KKF + D
Sbjct: 350 LMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAA--NLQDCYRL 407
Query: 289 LKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNR 348
+ I L +V + E E ++L L F V + ++ + E++ +D+++
Sbjct: 408 YQGINQLPNVIQALEK--HEGKHQKLLLAVF--VTPLTD-LRSDFSKFQEMIETTLDMDQ 462
Query: 349 SKEKGYGTLVREGFCDELDELRQIYEELPEFLE 381
+ + LV+ F L ELR+I +L + ++
Sbjct: 463 VENHEF--LVKPSFDPNLSELREIMNDLEKKMQ 493
Score = 49 (22.3 bits), Expect = 5.7e-34, Sum P(2) = 5.7e-34
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 3 VYMACILHGHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQ 52
V M+ + +VGV Y DS R+L + E + D N F ++ + Q P+
Sbjct: 150 VKMSAVDGQRQVGVGYVDSIQRKLGLCE-FPD-NDQFSNLEALLIQIGPK 197
>UNIPROTKB|P43246 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9606
"Homo sapiens" [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0019237 "centromeric DNA binding"
evidence=IEA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=ISS;IBA] [GO:0010224
"response to UV-B" evidence=ISS;IBA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0042771
"intrinsic apoptotic signaling pathway in response to DNA damage by
p53 class mediator" evidence=IBA] [GO:0045128 "negative regulation
of reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=ISS;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0019901 "protein kinase binding" evidence=IPI]
[GO:0006298 "mismatch repair" evidence=IDA] [GO:0006301
"postreplication repair" evidence=IDA] [GO:0008022 "protein
C-terminus binding" evidence=IPI] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA;IMP] [GO:0032405
"MutLalpha complex binding" evidence=IDA] [GO:0032301 "MutSalpha
complex" evidence=IDA] [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0032302 "MutSbeta complex" evidence=IDA]
[GO:0030983 "mismatched DNA binding" evidence=IDA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IDA]
[GO:0032143 "single thymine insertion binding" evidence=IDA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0032142 "single guanine insertion binding" evidence=IDA]
[GO:0032357 "oxidized purine DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IMP] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0043531 "ADP binding" evidence=IDA] [GO:0000400
"four-way junction DNA binding" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0019724 "B cell
mediated immunity" evidence=ISS] [GO:0008584 "male gonad
development" evidence=ISS] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=ISS] [GO:0030183 "B cell
differentiation" evidence=ISS] [GO:0043524 "negative regulation of
neuron apoptotic process" evidence=ISS] [GO:0045910 "negative
regulation of DNA recombination" evidence=ISS;IDA] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0051096 "positive regulation of helicase
activity" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=IDA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0008340
GO:GO:0042803 GO:GO:0042771 GO:GO:0042493 GO:GO:0003684
GO:GO:0001701 GO:GO:0043524 GO:GO:0007050 GO:GO:0007283
GO:GO:0006119 GO:GO:0008584 GO:GO:0019237 GO:GO:0014070
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 Orphanet:144
GO:GO:0006301 GO:GO:0031573 MIM:608089 GO:GO:0008094 GO:GO:0006311
GO:GO:0016446 EMBL:AC079775 eggNOG:COG0249 SUPFAM:SSF48334
MIM:158320 Orphanet:587 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 CTD:4436 HOVERGEN:HBG006399
OrthoDB:EOG4D26P5 GO:GO:0051096 EMBL:U03911 EMBL:U04045 EMBL:U41221
EMBL:U41206 EMBL:U41207 EMBL:U41208 EMBL:U41210 EMBL:U41211
EMBL:U41212 EMBL:U41213 EMBL:U41214 EMBL:U41215 EMBL:U41216
EMBL:U41217 EMBL:U41218 EMBL:U41219 EMBL:U41220 EMBL:L47583
EMBL:L47582 EMBL:L47581 EMBL:AY601851 EMBL:AK304496 EMBL:BX649122
EMBL:AC138655 EMBL:BC021566 EMBL:AF066081 IPI:IPI00017303
IPI:IPI01014700 PIR:I64819 RefSeq:NP_000242.1 UniGene:Hs.597656
PDB:2O8B PDB:2O8C PDB:2O8D PDB:2O8E PDB:2O8F PDB:3THW PDB:3THX
PDB:3THY PDB:3THZ PDBsum:2O8B PDBsum:2O8C PDBsum:2O8D PDBsum:2O8E
PDBsum:2O8F PDBsum:3THW PDBsum:3THX PDBsum:3THY PDBsum:3THZ
ProteinModelPortal:P43246 SMR:P43246 DIP:DIP-35054N IntAct:P43246
MINT:MINT-84789 STRING:P43246 PhosphoSite:P43246 DMDM:1171032
PaxDb:P43246 PeptideAtlas:P43246 PRIDE:P43246 DNASU:4436
Ensembl:ENST00000233146 Ensembl:ENST00000543555 GeneID:4436
KEGG:hsa:4436 UCSC:uc002rvy.1 GeneCards:GC02P047630 HGNC:HGNC:7325
HPA:CAB009572 MIM:120435 MIM:609309 neXtProt:NX_P43246
PharmGKB:PA31133 InParanoid:P43246 PhylomeDB:P43246 ChiTaRS:MSH2
EvolutionaryTrace:P43246 GenomeRNAi:4436 NextBio:17289
ArrayExpress:P43246 Bgee:P43246 CleanEx:HS_MSH2
Genevestigator:P43246 GermOnline:ENSG00000095002 Uniprot:P43246
Length = 934
Score = 401 (146.2 bits), Expect = 6.1e-34, Sum P(2) = 6.1e-34
Identities = 157/566 (27%), Positives = 263/566 (46%)
Query: 205 SVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETL-KYV 263
S+ ++NKC TP G+RL+ W +P++D + RLN + F+ EL +L E L +
Sbjct: 325 SLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRF 384
Query: 264 KDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVE 323
D+ + KKF + D + I L +V + E E ++L L F V
Sbjct: 385 PDLNRLAKKFQRQAA--NLQDCYRLYQGINQLPNVIQALEK--HEGKHQKLLLAVF--VT 438
Query: 324 KAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEV 383
+ ++ + E++ +D+++ + + LV+ F L ELR+I +L + ++
Sbjct: 439 PLTD-LRSDFSKFQEMIETTLDMDQVENHEF--LVKPSFDPNLSELREIMNDLEKKMQST 495
Query: 384 ---ASLELVQLPHLCKEMFVPCIVYIHQIGYLMCIF--EEKLDDTTLEQLQGFEFAFSDM 438
A+ +L P K++ + Q GY + EEK+ L + F S +
Sbjct: 496 LISAARDLGLDPG--KQIKLDSSA---QFGYYFRVTCKEEKV----LRNNKNF----STV 542
Query: 439 DGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAEL 498
D + + + K L+ + + + AI +++V+ + + + + A+L
Sbjct: 543 DIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQL 602
Query: 499 DCFLSLALVAHQNN--YMRPILTLEP---LLDIQNGRHVLQEMTVD-TFIPNDTRIDNDG 552
D +S A V++ Y+RP + LE + ++ RH E+ + FIPND + D
Sbjct: 603 DAVVSFAHVSNGAPVPYVRPAI-LEKGQGRIILKASRHACVEVQDEIAFIPNDVYFEKDK 661
Query: 553 RI-NIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS--KHMTAEQS---- 605
++ +IITGPN GKS YI+Q +IV ++ IG FVP ++A V + D + A S
Sbjct: 662 QMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKG 721
Query: 606 --SFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLV 663
+FM ++ + +LR AT SL ++DE G+GT T DG GL Y T + +
Sbjct: 722 VSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIAT-KIGAFCMF 780
Query: 664 CTH---LTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLH 720
TH LT L N+ +P L ++ L E E + LY++ G S+G+H
Sbjct: 781 ATHFHELTALANQ--IPTVNNLH---VTALTTE------ETLTMLYQVKKGVCDQSFGIH 829
Query: 721 CALLAGVPAEVI---KRAAYVLEAAQ 743
A LA P VI K+ A LE Q
Sbjct: 830 VAELANFPKHVIECAKQKALELEEFQ 855
Score = 165 (63.1 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 55/213 (25%), Positives = 100/213 (46%)
Query: 170 NKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRP 229
++++KLD A AL +FQ + G S+ ++NKC TP G+RL+ W +P
Sbjct: 297 SQYMKLDIAAVRALNLFQGSVEDT---TGSQ----SLAALLNKCKTPQGQRLVNQWIKQP 349
Query: 230 ILDLENLNSRLNAISFFLCSEELMASLHETL-KYVKDIPHILKKFNSPSFIYTASDWTAF 288
++D + RLN + F+ EL +L E L + D+ + KKF + D
Sbjct: 350 LMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAA--NLQDCYRL 407
Query: 289 LKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNR 348
+ I L +V + E E ++L L F V + ++ + E++ +D+++
Sbjct: 408 YQGINQLPNVIQALEK--HEGKHQKLLLAVF--VTPLTD-LRSDFSKFQEMIETTLDMDQ 462
Query: 349 SKEKGYGTLVREGFCDELDELRQIYEELPEFLE 381
+ + LV+ F L ELR+I +L + ++
Sbjct: 463 VENHEF--LVKPSFDPNLSELREIMNDLEKKMQ 493
Score = 49 (22.3 bits), Expect = 6.1e-34, Sum P(2) = 6.1e-34
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 3 VYMACILHGHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQ 52
V M+ + +VGV Y DS R+L + E + D N F ++ + Q P+
Sbjct: 150 VKMSAVDGQRQVGVGYVDSIQRKLGLCE-FPD-NDQFSNLEALLIQIGPK 197
>UNIPROTKB|F1P6X2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110
SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:AAEX03004895 EMBL:AAEX03004896
Ensembl:ENSCAFT00000032471 Uniprot:F1P6X2
Length = 798
Score = 398 (145.2 bits), Expect = 9.6e-34, P = 9.6e-34
Identities = 144/558 (25%), Positives = 252/558 (45%)
Query: 201 KEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETL 260
+ ++FG++N TP G R LR+ L P++D+E +N RL+ + L EEL L +
Sbjct: 192 RNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETINMRLDCVQELLQDEELFFGLQSVI 251
Query: 261 KYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFD 320
D +L I A I +L+++ E + + L+ L+ N
Sbjct: 252 SRFLDTEQLLSVLVQ---IPKQDTVNAAESKITNLIYLKHTLE--LVDPLKIALKNYNTP 306
Query: 321 IVEKAASCITTE-LAYVYELVIGIID---------VNRSKEKGYGTLVREGFCDELDELR 370
++ + + + E + +I+ +N +K Y VR + LD R
Sbjct: 307 LLRAYCGSLEDKRFGIILEKIKTVINDDTRYMKGCLNMRTQKCYA--VRSNINEFLDIAR 364
Query: 371 QIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQI-GYLMCIFEEKLDDTTL--EQ 427
+ Y E+ ++++A + + L ++ +P G+ + + +D T L Q
Sbjct: 365 RTYTEI---VDDIAGM----ISQLAEKYNLPLRTSFSSARGFFI---QMTIDCTALPNNQ 414
Query: 428 LQGFEFAFSDMDGETKRLFYHTPKTRE-LDNLLGDIYHKILDMERAITRDLVSHI-CLFS 485
L S + K E L +IYH + + ++ HI CL+
Sbjct: 415 LPSEFIKISKVKSSYTFTSADLIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHCLY- 473
Query: 486 DHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRH-VLQEMTVDTFIPN 544
K + + LD LS A ++Y+RP T L I+ G H +L++++V+ I N
Sbjct: 474 ----KLSDTVSMLDMLLSFAHACTLSDYVRPEFT--DTLAIKQGWHPILEKISVEKPIAN 527
Query: 545 DTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS------- 597
+T I IITGPN SGKS Y+KQ+AL ++ IGS+VPA+ ++ + +
Sbjct: 528 NTYITEGSNFLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAEQIFTRIST 587
Query: 598 -KHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCD 656
+ S+FM ++ ++ +L A ++SL L+DE G+GT TE+GIG+ Y ++
Sbjct: 588 DDDIETNSSTFMKEMKEIAYILHNANNKSLILIDELGRGTSTEEGIGICYAVCEYLLS-- 645
Query: 657 VPPKVLVCTHLTELLN-EGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHAL- 714
+ L TH EL + E P E + F V ++ S + E I++ Y+L G
Sbjct: 646 LKAFTLFATHFLELCHIEALYPNVENMHFEVQHV---KDTSRNKEAILYTYKLCKGLTEE 702
Query: 715 LSYGLHCALLAGVPAEVI 732
+YGL A ++ +P ++
Sbjct: 703 KNYGLKAAEVSSLPPSIV 720
>UNIPROTKB|E2RJA9 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:AAEX03004895 EMBL:AAEX03004896 Ensembl:ENSCAFT00000037908
Uniprot:E2RJA9
Length = 930
Score = 398 (145.2 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 144/558 (25%), Positives = 252/558 (45%)
Query: 201 KEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETL 260
+ ++FG++N TP G R LR+ L P++D+E +N RL+ + L EEL L +
Sbjct: 324 RNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETINMRLDCVQELLQDEELFFGLQSVI 383
Query: 261 KYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFD 320
D +L I A I +L+++ E + + L+ L+ N
Sbjct: 384 SRFLDTEQLLSVLVQ---IPKQDTVNAAESKITNLIYLKHTLE--LVDPLKIALKNYNTP 438
Query: 321 IVEKAASCITTE-LAYVYELVIGIID---------VNRSKEKGYGTLVREGFCDELDELR 370
++ + + + E + +I+ +N +K Y VR + LD R
Sbjct: 439 LLRAYCGSLEDKRFGIILEKIKTVINDDTRYMKGCLNMRTQKCYA--VRSNINEFLDIAR 496
Query: 371 QIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQI-GYLMCIFEEKLDDTTL--EQ 427
+ Y E+ ++++A + + L ++ +P G+ + + +D T L Q
Sbjct: 497 RTYTEI---VDDIAGM----ISQLAEKYNLPLRTSFSSARGFFI---QMTIDCTALPNNQ 546
Query: 428 LQGFEFAFSDMDGETKRLFYHTPKTRE-LDNLLGDIYHKILDMERAITRDLVSHI-CLFS 485
L S + K E L +IYH + + ++ HI CL+
Sbjct: 547 LPSEFIKISKVKSSYTFTSADLIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHCLY- 605
Query: 486 DHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRH-VLQEMTVDTFIPN 544
K + + LD LS A ++Y+RP T L I+ G H +L++++V+ I N
Sbjct: 606 ----KLSDTVSMLDMLLSFAHACTLSDYVRPEFT--DTLAIKQGWHPILEKISVEKPIAN 659
Query: 545 DTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS------- 597
+T I IITGPN SGKS Y+KQ+AL ++ IGS+VPA+ ++ + +
Sbjct: 660 NTYITEGSNFLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAEQIFTRIST 719
Query: 598 -KHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCD 656
+ S+FM ++ ++ +L A ++SL L+DE G+GT TE+GIG+ Y ++
Sbjct: 720 DDDIETNSSTFMKEMKEIAYILHNANNKSLILIDELGRGTSTEEGIGICYAVCEYLLS-- 777
Query: 657 VPPKVLVCTHLTELLN-EGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHAL- 714
+ L TH EL + E P E + F V ++ S + E I++ Y+L G
Sbjct: 778 LKAFTLFATHFLELCHIEALYPNVENMHFEVQHV---KDTSRNKEAILYTYKLCKGLTEE 834
Query: 715 LSYGLHCALLAGVPAEVI 732
+YGL A ++ +P ++
Sbjct: 835 KNYGLKAAEVSSLPPSIV 852
>UNIPROTKB|P49849 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0030983
GO:GO:0008094 EMBL:U27343 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
GO:GO:0032300 KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 PIR:C69663
RefSeq:NP_389586.2 ProteinModelPortal:P49849 SMR:P49849
EnsemblBacteria:EBBACT00000003342 GeneID:939501 KEGG:bsu:BSU17040
PATRIC:18975215 GenoList:BSU17040 BioCyc:BSUB:BSU17040-MONOMER
Uniprot:P49849
Length = 858
Score = 396 (144.5 bits), Expect = 2.0e-33, P = 2.0e-33
Identities = 142/556 (25%), Positives = 263/556 (47%)
Query: 201 KEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETL 260
K+G S+ ++++ T MG RLL+ W RP++ + + R + + L E L
Sbjct: 271 KKG-SLLWLLDETKTAMGGRLLKQWIDRPLIRVNQIEERQEMVETLMSHFFEREDLRERL 329
Query: 261 KYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFD 320
K V D+ + + + A D +S+ + + ++ + +E+ + ++
Sbjct: 330 KEVYDLERLAGRVAFGNV--NARDLIQLKESLKQVPGIKQLVASLAHDKAKERAKRID-- 385
Query: 321 IVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFL 380
C V EL+ + N G L+++G+ +LDE R ++
Sbjct: 386 ------PC-----GDVLELLEEALYENPPLSVKEGNLIKDGYNQKLDEYRDASRNGKDW- 433
Query: 381 EEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDG 440
+A LE + + + + GY + + + L LE+ + +E + +
Sbjct: 434 --IARLEQQEREYTGIRSLK--VGFNKVFGYYIEVTKANLH--LLEEGR-YERKQTLTNA 486
Query: 441 ETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDC 500
E Y TP+ +E + L+ + + I ++E + +L + + L + +ELD
Sbjct: 487 ER----YITPELKEKEALILEAENNICELEYELFTELREKVKQYIPRLQQLAKQMSELDA 542
Query: 501 FLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTVDT--FIPNDTRIDNDGRINIIT 558
A ++ +Y +P + + + ++ GRH + E +D+ ++PN+ + ++ ++ +IT
Sbjct: 543 LQCFATISENRHYTKPEFSKDEV-EVIEGRHPVVEKVMDSQEYVPNNCMMGDNRQMLLIT 601
Query: 559 GPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMID 610
GPN SGKS Y++Q+ALI ++ IG FVPA A + + D + + + QS+FM++
Sbjct: 602 GPNMSGKSTYMRQIALISIMAQIGCFVPAKKAVLPIFDQIFTRIGAADDLISGQSTFMVE 661
Query: 611 LHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTEL 670
+ + + AT SL L DE G+GT T DG+ L I Y V + K L TH EL
Sbjct: 662 MLEAKNAIVNATKNSLILFDEIGRGTSTYDGMALAQAIIEY-VHDHIGAKTLFSTHYHEL 720
Query: 671 -LNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPA 729
+ E LP+ LK + V E N T +VFL+++ G A SYG+H A LA +P
Sbjct: 721 TVLEDKLPQ---LK--NVHVRAEEYNGT----VVFLHQIKEGAADKSYGIHVAQLAELPG 771
Query: 730 EVIKRAAYVLEAAQNN 745
++I RA +L+ +++
Sbjct: 772 DLIARAQDILKELEHS 787
Score = 363 (132.8 bits), Expect = 1.6e-33, Sum P(2) = 1.6e-33
Identities = 102/339 (30%), Positives = 176/339 (51%)
Query: 447 YHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLAL 506
Y TP+ +E + L+ + + I ++E + +L + + L + +ELD A
Sbjct: 489 YITPELKEKEALILEAENNICELEYELFTELREKVKQYIPRLQQLAKQMSELDALQCFAT 548
Query: 507 VAHQNNYMRPILTLEPLLDIQNGRHVLQEMTVDT--FIPNDTRIDNDGRINIITGPNYSG 564
++ +Y +P + + + ++ GRH + E +D+ ++PN+ + ++ ++ +ITGPN SG
Sbjct: 549 ISENRHYTKPEFSKDEV-EVIEGRHPVVEKVMDSQEYVPNNCMMGDNRQMLLITGPNMSG 607
Query: 565 KSIYIKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGM 616
KS Y++Q+ALI ++ IG FVPA A + + D + + + QS+FM+++ +
Sbjct: 608 KSTYMRQIALISIMAQIGCFVPAKKAVLPIFDQIFTRIGAADDLISGQSTFMVEMLEAKN 667
Query: 617 MLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTEL-LNEGC 675
+ AT SL L DE G+GT T DG+ L I Y V + K L TH EL + E
Sbjct: 668 AIVNATKNSLILFDEIGRGTSTYDGMALAQAIIEY-VHDHIGAKTLFSTHYHELTVLEDK 726
Query: 676 LPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRA 735
LP+ LK + V E N T +VFL+++ G A SYG+H A LA +P ++I RA
Sbjct: 727 LPQ---LK--NVHVRAEEYNGT----VVFLHQIKEGAADKSYGIHVAQLAELPGDLIARA 777
Query: 736 AYVLEAAQNNKHVERWSHENISAQDQQYKNAVEKMLAFD 774
+L+ +++ + + Q Q K ++ FD
Sbjct: 778 QDILKELEHSGN-----KPEVPVQKPQVKEEPAQLSFFD 811
Score = 84 (34.6 bits), Expect = 1.6e-33, Sum P(2) = 1.6e-33
Identities = 32/136 (23%), Positives = 61/136 (44%)
Query: 140 LENERIVDTLEQ-----KESGNASITIDSVIEV-SLNKFLKLDATAHEALQIFQTDKHPS 193
L NE I T + K + S+ ++V L + +K+D + L++ +T +
Sbjct: 211 LNNEDITKTFLRLYTYLKRTQKRSLDHLQPVQVYELEEAMKIDLYSKRNLELTETIR--- 267
Query: 194 HMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELM 253
+ K+G S+ ++++ T MG RLL+ W RP++ + + R + +
Sbjct: 268 ----SKNKKG-SLLWLLDETKTAMGGRLLKQWIDRPLIRVNQIEERQEMVETLMSHFFER 322
Query: 254 ASLHETLKYVKDIPHI 269
L E LK V D+ +
Sbjct: 323 EDLRERLKEVYDLERL 338
>UNIPROTKB|P23909 [details] [associations]
symbol:mutS species:83333 "Escherichia coli K-12"
[GO:0006298 "mismatch repair" evidence=IEA;IDA;IMP] [GO:0030983
"mismatched DNA binding" evidence=IDA] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0032300 "mismatch repair complex"
evidence=IGI] [GO:0032136 "adenine/cytosine mispair binding"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEP] [GO:0043531 "ADP binding" evidence=IDA] [GO:0008301
"DNA binding, bending" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0000018 "regulation of DNA recombination"
evidence=IMP] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000166
"nucleotide binding" evidence=IEA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003684
GO:GO:0043531 GO:GO:0008301 GO:GO:0006298 EMBL:U29579 GO:GO:0000018
GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
PDB:2OK2 PDBsum:2OK2 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032300 HOGENOM:HOG000221407 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
OMA:ITQTVRD EMBL:M64730 EMBL:AF004287 EMBL:AF001987 EMBL:AF001988
EMBL:AF001989 EMBL:AF001990 EMBL:AF001991 EMBL:AF001992
EMBL:AF001993 EMBL:AF001994 EMBL:AF001995 EMBL:AF001996
EMBL:AF001997 EMBL:AF001998 EMBL:AF001999 EMBL:AF002000
EMBL:AF002001 EMBL:AF002002 EMBL:AF002003 EMBL:AF002004
EMBL:AF002005 EMBL:AF002006 EMBL:AF002007 EMBL:AF002008
EMBL:AF002009 EMBL:AF002010 PIR:I54964 RefSeq:NP_417213.1
RefSeq:YP_490942.1 PDB:1E3M PDB:1NG9 PDB:1OH5 PDB:1OH6 PDB:1OH7
PDB:1OH8 PDB:1W7A PDB:1WB9 PDB:1WBB PDB:1WBD PDB:2WTU PDB:3K0S
PDBsum:1E3M PDBsum:1NG9 PDBsum:1OH5 PDBsum:1OH6 PDBsum:1OH7
PDBsum:1OH8 PDBsum:1W7A PDBsum:1WB9 PDBsum:1WBB PDBsum:1WBD
PDBsum:2WTU PDBsum:3K0S ProteinModelPortal:P23909 SMR:P23909
DIP:DIP-10287N IntAct:P23909 MINT:MINT-1264156 SWISS-2DPAGE:P23909
PRIDE:P23909 EnsemblBacteria:EBESCT00000004425
EnsemblBacteria:EBESCT00000016508 GeneID:12932427 GeneID:947206
KEGG:ecj:Y75_p2671 KEGG:eco:b2733 PATRIC:32120868 EchoBASE:EB0620
EcoGene:EG10625 BioCyc:EcoCyc:EG10625-MONOMER
BioCyc:ECOL316407:JW2703-MONOMER BioCyc:MetaCyc:EG10625-MONOMER
EvolutionaryTrace:P23909 Genevestigator:P23909 GO:GO:0032136
Uniprot:P23909
Length = 853
Score = 363 (132.8 bits), Expect = 2.5e-33, Sum P(2) = 2.5e-33
Identities = 123/402 (30%), Positives = 191/402 (47%)
Query: 355 GTLVREGFCDELDELRQIYEELPEFLE--EVASLELVQLPHLCKEMFVPCIVYIHQIGYL 412
G ++ G+ +ELDE R + + ++LE EV E L L K F +H GY
Sbjct: 422 GGVIASGYNEELDEWRALADGATDYLERLEVRERERTGLDTL-KVGFNA----VH--GYY 474
Query: 413 MCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERA 472
+ I + L + +R Y P+ +E ++ + K L +E+
Sbjct: 475 IQISRGQ------SHLAPINYMRRQTLKNAER--YIIPELKEYEDKVLTSKGKALALEKQ 526
Query: 473 ITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRH- 531
+ +L + + L ++ + AELD ++LA A+ NY P +P + I GRH
Sbjct: 527 LYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKPGIRITEGRHP 586
Query: 532 VLQEMTVDTFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAAT 591
V++++ + FI N + R+ IITGPN GKS Y++Q ALI +++IGS+VPA
Sbjct: 587 VVEQVLNEPFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVE 646
Query: 592 VGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIG 643
+G D + + + +S+FM+++ + +L AT SL L+DE G+GT T DG+
Sbjct: 647 IGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLS 706
Query: 644 LLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLP-KSERLKFYTMSVLRPENNSTDVEDI 702
L + L TH EL LP K E + + L E+ T I
Sbjct: 707 LAWACAENLAN-KIKALTLFATHYFELTQ---LPEKMEGVANVHLDAL--EHGDT----I 756
Query: 703 VFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQN 744
F++ + G A SYGL A LAGVP EVIKRA L ++
Sbjct: 757 AFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELES 798
Score = 82 (33.9 bits), Expect = 2.5e-33, Sum P(2) = 2.5e-33
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 214 VTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKK 272
VTPMG R+L+ W P+ D L R I ++ A L L+ V D+ IL +
Sbjct: 299 VTPMGSRMLKRWLHMPVRDTRVLLERQQTIGAL---QDFTAGLQPVLRQVGDLERILAR 354
>FB|FBgn0015546 [details] [associations]
symbol:spel1 "spellchecker1" species:7227 "Drosophila
melanogaster" [GO:0006298 "mismatch repair" evidence=ISS;NAS;IMP]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
[GO:0006301 "postreplication repair" evidence=IBA;NAS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0006311 "meiotic gene conversion" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0045128 "negative regulation of
reciprocal meiotic recombination" evidence=IBA] [GO:0010224
"response to UV-B" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0042771 EMBL:AE014134 GO:GO:0003684 GO:GO:0006302
GO:GO:0010165 GO:GO:0010224 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0031573
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GeneTree:ENSGT00550000074867 EMBL:U17893
RefSeq:NP_001014482.1 RefSeq:NP_001246031.1 RefSeq:NP_523565.2
UniGene:Dm.2676 ProteinModelPortal:P43248 SMR:P43248 DIP:DIP-21499N
IntAct:P43248 MINT:MINT-1547583 STRING:P43248 PaxDb:P43248
EnsemblMetazoa:FBtr0080630 EnsemblMetazoa:FBtr0309281 GeneID:34842
KEGG:dme:Dmel_CG4215 UCSC:CG4215-RA CTD:34842 FlyBase:FBgn0015546
InParanoid:P43248 OrthoDB:EOG4S1RP5 PhylomeDB:P43248
GenomeRNAi:34842 NextBio:790493 Bgee:P43248 GermOnline:CG4215
Uniprot:P43248
Length = 917
Score = 395 (144.1 bits), Expect = 3.0e-33, P = 3.0e-33
Identities = 155/621 (24%), Positives = 284/621 (45%)
Query: 166 EVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNW 225
++ LN+F+ LD+ A AL I K +H + + SV G+++ C TP G RL+ W
Sbjct: 290 QLDLNRFVHLDSAAVAALNIMP--KPGTHPSMPSYRWQ-SVLGVLDHCRTPQGHRLMGQW 346
Query: 226 FLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDW 285
+P+ LN R N + L S + M +L +L Y+K IP IL + + ++
Sbjct: 347 VKQPLRSRNILNDRHNIVQCLLESPDTMETL--SLDYLKRIPDILML--TKKLMRRKANL 402
Query: 286 TAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIID 345
+ +L KI +V L E ++ +L + ++V ++D
Sbjct: 403 QDLFRIYQVILRTPKILKV-----LHELDNSTIESVICAPFKSFLKDLTGLKQMVEQVVD 457
Query: 346 VNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVY 405
+ Y LV+ F L EL+Q+ EL +EE+ + Q +L + V +
Sbjct: 458 FEAIERGEY--LVKASFDSRLMELQQMMTELYSKMEEL-QFKCSQELNLDGKNQVK-LES 513
Query: 406 IHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHK 465
+ ++G+ I + DD+ L + + + + G + + + K + +
Sbjct: 514 VAKLGHHFRITVK--DDSVLRKNKNYRIV-DVIKGGVR---FTSDKLEGYADEFASCRTR 567
Query: 466 ILDMERAITRDLVSHICL-FSDHLLKAVNFAAELDCFLSLALVAHQ--NNYMRPILTLEP 522
+ + +I +++ H+ + ++ L N A+LDC +S A+ A Y+RP + E
Sbjct: 568 YEEQQLSIVEEII-HVAVGYAAPLTLLNNELAQLDCLVSFAIAARSAPTPYVRPKMLEEG 626
Query: 523 L--LDIQNGRHVLQEMTVDT-FIPNDTRIDNDG-RINIITGPNYSGKSIYIKQVALIVFL 578
L +++ RH E+ FI N + + IITGPN GKS YI+ V V +
Sbjct: 627 ARELVLEDVRHPCLELQEHVNFIANSVDFKKEECNMFIITGPNMGGKSTYIRSVGTAVLM 686
Query: 579 SHIGSFVPADAATVGLTDS--------KHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLD 630
+HIG+FVP AT+ + DS ++ S+FM+++ + ++R AT +SL ++D
Sbjct: 687 AHIGAFVPCSLATISMVDSILGRVGASDNIIKGLSTFMVEMIETSGIIRTATDKSLVIID 746
Query: 631 EFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKS-ERLKFYTMSV 689
E G+GT T +G G+ + + L TH E+ L ++ +K M+
Sbjct: 747 ELGRGTSTYEGCGIAWSIAEHLAK-ETKCFTLFATHFHEITK---LAETLSTVKNCHMAA 802
Query: 690 LRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVE 749
+ D +D LY++ G S+G+ A LA P V++ A V ++ +HV+
Sbjct: 803 V------ADADDFTLLYQVRSGVMEKSFGIQVARLANFPEHVVQNAQEVYNEFED-EHVD 855
Query: 750 RWSHENISAQDQQYKNAVEKM 770
+ E+ A ++ + A++++
Sbjct: 856 KQKKED-KALLEKIQVAIQQL 875
>SGD|S000001162 [details] [associations]
symbol:MSH1 "DNA-binding protein involved in repair of
mitochondrial DNA" species:4932 "Saccharomyces cerevisiae"
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IMP] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0043570
"maintenance of DNA repeat elements" evidence=IRD] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0043504 "mitochondrial DNA
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA;IMP]
[GO:0032137 "guanine/thymine mispair binding" evidence=IDA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IDA] [GO:0000002 "mitochondrial genome maintenance"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IMP] [GO:0003684 "damaged DNA binding" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000001162 GO:GO:0005739 GO:GO:0005524
GO:GO:0003684 EMBL:BK006934 GO:GO:0006298 EMBL:U00059 GO:GO:0008094
GO:GO:0043504 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150 EMBL:M84169
PIR:S48962 RefSeq:NP_011988.1 ProteinModelPortal:P25846 SMR:P25846
DIP:DIP-6433N IntAct:P25846 MINT:MINT-683422 STRING:P25846
PaxDb:P25846 EnsemblFungi:YHR120W GeneID:856520 KEGG:sce:YHR120W
CYGD:YHR120w OMA:KERLLNP NextBio:982278 Genevestigator:P25846
GermOnline:YHR120W GO:GO:0032300 GO:GO:0032139 Uniprot:P25846
Length = 959
Score = 319 (117.4 bits), Expect = 3.7e-33, Sum P(2) = 3.7e-33
Identities = 95/330 (28%), Positives = 167/330 (50%)
Query: 436 SDMDGETKRLFYHTPKTRELDNLLG-DIYHKILDMERAITRDLVSHICLF-------SDH 487
++ G + + +TR L + + D+ H++ + I + + I LF S+
Sbjct: 636 TEYHGSCFHILQKSSQTRWLSHKIWTDLGHELELLNLKIRNEEANIIDLFKRKFIDRSNE 695
Query: 488 LLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQE-----MTVDTFI 542
+ + LD S A++A++ N + P + L++ NGRH++ E +++TF
Sbjct: 696 VRQVATTLGYLDTLSSFAVLANERNLVCPKVDESNKLEVVNGRHLMVEEGLSARSLETFT 755
Query: 543 PNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD---SKH 599
N+ + D + +ITGPN GKS +++Q A+IV L+ IG FVP A VG+ D S+
Sbjct: 756 ANNCELAKDN-LWVITGPNMGGKSTFLRQNAIIVILAQIGCFVPCSKARVGIVDKLFSRV 814
Query: 600 MTA-----EQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVT 654
+A E S+FM+++ + +L+ AT +SL +LDE G+GT ++GI + T+ Y +
Sbjct: 815 GSADDLYNEMSTFMVEMIETSFILQGATERSLAILDEIGRGTSGKEGISIAYATLKYLLE 874
Query: 655 CDVPPKVLVCTH----LTELLNEGCLP-KSERLKFYTMSVLRPENNSTDVEDIVFLYRLV 709
+ + L TH L ++++ C SE++KFY + N+ + ++L
Sbjct: 875 NN-QCRTLFATHFGQELKQIIDNKCSKGMSEKVKFYQSGITDLGGNN-----FCYNHKLK 928
Query: 710 PGHALLSYGLHCALLAGVPAEVIKRAAYVL 739
PG S + A LAG P E +K A +L
Sbjct: 929 PGICTKSDAIRVAELAGFPMEALKEAREIL 958
Score = 129 (50.5 bits), Expect = 3.7e-33, Sum P(2) = 3.7e-33
Identities = 31/102 (30%), Positives = 54/102 (52%)
Query: 173 LKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILD 232
+++D+ AL++ T + + K+G S+ + + VTP G RLL W P LD
Sbjct: 363 MQIDSRTSTALELHSTVRDNN-------KKG-SLLSSIRRTVTPSGTRLLSQWLSGPSLD 414
Query: 233 LENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFN 274
L+ + R ++FF + ++ +L LK V D+ IL+KF+
Sbjct: 415 LKEIKKRQKIVAFFKDNRDITETLRTMLKKVNDLSRILQKFS 456
Score = 44 (20.5 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 329 ITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLEL 388
I T+L + EL+ I R++E L + F D +E+RQ+ L +L+ ++S +
Sbjct: 659 IWTDLGHELELLNLKI---RNEEANIIDLFKRKFIDRSNEVRQVATTLG-YLDTLSSFAV 714
Query: 389 V 389
+
Sbjct: 715 L 715
Score = 41 (19.5 bits), Expect = 1.6e-23, Sum P(3) = 1.6e-23
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 249 SEELMASLHETLKYVKDIPHILK 271
+E ASL +L+YV+D+ + K
Sbjct: 72 TEPSKASLPPSLQYVRDLMDLYK 94
Score = 40 (19.1 bits), Expect = 1.6e-23, Sum P(3) = 1.6e-23
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 301 IFEVGISESLREQLRLLNFDIVEKAASCITTELAYV 336
+F +G E+ QL++ +K + + L YV
Sbjct: 305 LFNLGGKEATERQLKIQFQTFTQKELAALRNTLIYV 340
Score = 39 (18.8 bits), Expect = 9.7e-24, Sum P(2) = 9.7e-24
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 243 ISFFLCSEELMASLHETLKYVKD-IPHILKKFNSP 276
I F +++ +A+L TL YV + +P F P
Sbjct: 320 IQFQTFTQKELAALRNTLIYVSNHLPDFSINFQIP 354
Score = 39 (18.8 bits), Expect = 2.1e-23, Sum P(3) = 2.1e-23
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 308 ESLREQLRLLNFDIVEKAAS 327
E+LRE LLN + E S
Sbjct: 197 ENLRENTYLLNIEFPENCMS 216
>POMBASE|SPAC13F5.01c [details] [associations]
symbol:msh1 "mitochondrial MutS protein Msh1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005524
"ATP binding" evidence=ISS] [GO:0005739 "mitochondrion"
evidence=ISS;IDA] [GO:0006298 "mismatch repair" evidence=ISM]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0030983 "mismatched DNA binding" evidence=ISM] [GO:0043504
"mitochondrial DNA repair" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 PomBase:SPAC13F5.01c GO:GO:0005739
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 GO:GO:0043504 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 EMBL:AB027833 PIR:T38256 RefSeq:NP_593649.2
ProteinModelPortal:O13921 STRING:O13921 PRIDE:O13921
EnsemblFungi:SPAC13F5.01c.1 GeneID:2542833 KEGG:spo:SPAC13F5.01c
HOGENOM:HOG000157750 OMA:LAMQCGD OrthoDB:EOG42591V NextBio:20803875
SUPFAM:SSF53150 Uniprot:O13921
Length = 941
Score = 345 (126.5 bits), Expect = 4.0e-33, Sum P(2) = 4.0e-33
Identities = 100/308 (32%), Positives = 159/308 (51%)
Query: 454 ELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNY 513
+L+N I+ + + ++IT ++VSH L N ELD SLA +A + ++
Sbjct: 641 DLENTKLHIHQEEQRVLKSITDEIVSH----HKTLRSLANALDELDISTSLATLAQEQDF 696
Query: 514 MRPILTLEPLLDIQNGRHVLQEMTVD----TFIPNDTRIDNDGRINI--ITGPNYSGKSI 567
+RP++ + GRH + E + F PND + N G +NI ITGPN +GKS
Sbjct: 697 VRPVVDDSHAHTVIQGRHPIVEKGLSHKLIPFTPNDCFVGN-GNVNIWLITGPNMAGKST 755
Query: 568 YIKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLR 619
+++Q A+I L+ IGSFVPA A +G+ D + ++ ++S+FM+++ + +L+
Sbjct: 756 FLRQNAIISILAQIGSFVPASNARIGIVDQIFSRIGSADNLYQQKSTFMVEMMETSFILK 815
Query: 620 QATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKS 679
AT +S ++DE G+GT DGI + G + Y T + + L TH +L N L KS
Sbjct: 816 NATRRSFVIMDEIGRGTTASDGIAIAYGCLKYLSTIN-HSRTLFATHAHQLTN---LTKS 871
Query: 680 -ERLKFYTMSVLRPENNSTDVEDIVFL--YRLVPGHALLSYGLHCALLAGVPAEVIKRAA 736
+ ++ Y N S D +D F Y+L G S+GL A +AG+P V+ A
Sbjct: 872 FKNVECYCT------NLSIDRDDHTFSFDYKLKKGVNYQSHGLKVAEMAGIPKNVLLAAE 925
Query: 737 YVLEAAQN 744
VL N
Sbjct: 926 EVLTLLPN 933
Score = 101 (40.6 bits), Expect = 4.0e-33, Sum P(2) = 4.0e-33
Identities = 53/229 (23%), Positives = 99/229 (43%)
Query: 156 NASITIDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVT 215
N+ I I VSLN+++ + +A + L+I + + G S+ +NK VT
Sbjct: 326 NSHPNIQPPIRVSLNEYMIIGESAMKGLEIRSSLYQNRYTG--------SLLHAINKTVT 377
Query: 216 PMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKD----IPHILK 271
G RLL P ++ +N+RL+ + F EL + + LK D + H+L
Sbjct: 378 KSGSRLLTRRLCAPSTNIVEINNRLDLVEKFKLLPELCSKVINLLKKSNDTHRILQHLLM 437
Query: 272 -KFNSPSFIYTASDW--TAFLKSICSLLHVNKIFEVGI-SESLREQLR-LLNFDIVEKAA 326
+ NS + A ++ T + S+ S L + F + + + ++L+ L+N + E A
Sbjct: 438 GRGNSYDLLKMADNFSITKEIHSLLSPLESSSAFRLLLLNMHPHDELKQLINNAVDENAL 497
Query: 327 SCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEE 375
E++ + E +V++ E D +RQ ++E
Sbjct: 498 MKQKINEEEETEVIAQEAEEILQDENAQVEIVKKSLSSEFD-IRQSFKE 545
Score = 38 (18.4 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 30/148 (20%), Positives = 64/148 (43%)
Query: 150 EQKESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQTDKHP---------SHMGIGRA 200
E K+ N ++ +++++ +N+ + + A EA +I Q + S I ++
Sbjct: 483 ELKQLINNAVDENALMKQKINEEEETEVIAQEAEEILQDENAQVEIVKKSLSSEFDIRQS 542
Query: 201 -KEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHET 259
KE + V N + + +L ++ F E+L+ RL + S + +H
Sbjct: 543 FKENWVVKSNFNNNLRKLHEKL-QSLFASYDKLQEDLSKRLGKKATLRKSPAKLYYVHLK 601
Query: 260 LKYVKDIPHILKKFNSPSFIYTASDWTA 287
L + I +KKF + ++ ++ TA
Sbjct: 602 LSGNETIERFIKKFTQ-AVLFQSTKSTA 628
>RGD|620786 [details] [associations]
symbol:Msh2 "mutS homolog 2 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000287 "magnesium ion binding" evidence=IEA;ISO] [GO:0000400
"four-way junction DNA binding" evidence=IEA;ISO;IBA] [GO:0000403
"Y-form DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0001701 "in utero embryonic development"
evidence=IEA;ISO] [GO:0002204 "somatic recombination of
immunoglobulin genes involved in immune response" evidence=ISO]
[GO:0003677 "DNA binding" evidence=ISO;ISS] [GO:0003684 "damaged
DNA binding" evidence=ISO;IBA] [GO:0003697 "single-stranded DNA
binding" evidence=IEA;ISO] [GO:0005524 "ATP binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006119 "oxidative phosphorylation" evidence=IEA;ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair"
evidence=IEA;ISO] [GO:0006301 "postreplication repair"
evidence=ISO;ISS;IBA] [GO:0006302 "double-strand break repair"
evidence=IEA;ISO;IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0006915 "apoptotic process" evidence=IEA;ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0007050 "cell cycle arrest" evidence=IEA;ISO] [GO:0007281 "germ
cell development" evidence=IEA;ISO] [GO:0007283 "spermatogenesis"
evidence=IEP] [GO:0008022 "protein C-terminus binding"
evidence=IEA;ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008340 "determination of adult lifespan"
evidence=IEA;ISO] [GO:0008584 "male gonad development"
evidence=IEA;ISO] [GO:0010165 "response to X-ray"
evidence=IEA;ISO;IBA] [GO:0010224 "response to UV-B"
evidence=IEA;ISO;IBA] [GO:0014070 "response to organic cyclic
compound" evidence=IEP] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IEA;ISO;IBA] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=IEA;ISO] [GO:0019237
"centromeric DNA binding" evidence=IEA;ISO] [GO:0019724 "B cell
mediated immunity" evidence=ISO] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0019901 "protein kinase binding"
evidence=IEA;ISO] [GO:0030183 "B cell differentiation"
evidence=IEA;ISO] [GO:0030983 "mismatched DNA binding"
evidence=ISO] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IEA;ISO;IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA;ISO;IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032142 "single guanine
insertion binding" evidence=IEA;ISO] [GO:0032143 "single thymine
insertion binding" evidence=IEA;ISO] [GO:0032181 "dinucleotide
repeat insertion binding" evidence=IEA;ISO] [GO:0032301 "MutSalpha
complex" evidence=IEA;ISO;IBA] [GO:0032302 "MutSbeta complex"
evidence=IEA;ISO;IBA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA;ISO] [GO:0032405 "MutLalpha complex binding"
evidence=IEA;ISO] [GO:0042493 "response to drug" evidence=IEP]
[GO:0042771 "intrinsic apoptotic signaling pathway in response to
DNA damage by p53 class mediator" evidence=IBA] [GO:0042803
"protein homodimerization activity" evidence=IEA;ISO] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO]
[GO:0043200 "response to amino acid stimulus" evidence=IEP]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA;ISO] [GO:0043531 "ADP binding" evidence=IEA;ISO]
[GO:0043570 "maintenance of DNA repeat elements"
evidence=IEA;ISO;IBA] [GO:0045128 "negative regulation of
reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=IEA;ISO;IBA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA;ISO] [GO:0051096
"positive regulation of helicase activity" evidence=IEA;ISO]
[GO:0003690 "double-stranded DNA binding" evidence=ISO] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=ISO]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
RGD:620786 GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0042493
GO:GO:0000287 GO:GO:0003684 GO:GO:0001701 GO:GO:0043524
GO:GO:0007050 GO:GO:0043531 GO:GO:0007283 GO:GO:0006119
GO:GO:0008584 GO:GO:0019237 GO:GO:0014070 GO:GO:0003697
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 HOGENOM:HOG000196498
KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 CTD:4436
HOVERGEN:HBG006399 OrthoDB:EOG4D26P5 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:X93591
IPI:IPI00211849 PIR:JC6184 RefSeq:NP_112320.1 UniGene:Rn.3174
ProteinModelPortal:P54275 SMR:P54275 STRING:P54275
PhosphoSite:P54275 PRIDE:P54275 GeneID:81709 KEGG:rno:81709
UCSC:RGD:620786 InParanoid:P54275 NextBio:615336
ArrayExpress:P54275 Genevestigator:P54275
GermOnline:ENSRNOG00000015796 Uniprot:P54275
Length = 933
Score = 399 (145.5 bits), Expect = 1.3e-32, Sum P(3) = 1.3e-32
Identities = 159/599 (26%), Positives = 274/599 (45%)
Query: 170 NKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRP 229
++++KLD A AL +FQ + + + F +NKC T G+RL+ W +P
Sbjct: 297 SQYMKLDMAAVRALNLFQGSVEDT-----TGSQSLAAF--LNKCKTAQGQRLVSQWIKQP 349
Query: 230 ILDLENLNSRLNAISFFLCSEELMASLHETL-KYVKDIPHILKKFNSPSFIYTASDWTAF 288
++D + RLN + F+ EL +L E L + D+ + KKF + D
Sbjct: 350 LMDKNRIEERLNLVEAFVEDSELRRALQEDLLRRFPDLNRLAKKFQRQAA--NLQDCYRL 407
Query: 289 LKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNR 348
+ + L +V + E R Q LL + + + ++ + E + +D+++
Sbjct: 408 YQGVKQLPNVIQALE---KYQGRHQALLLAVFVTP--LTDLRSDFSKFQEKIETTLDMDQ 462
Query: 349 SKEKGYGTLVREGFCDELDELRQIYEELPEFLEEV---ASLELVQLPHLCKEMFVPCIVY 405
+ + LV+ F L ELR++ + L + ++ A+ L P K++ +
Sbjct: 463 VENHEF--LVKPSFDPNLSELREVMDGLEKKMQSTLISAARGLGLDPG--KQIKLDSSA- 517
Query: 406 IHQIGYLMCIF--EEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIY 463
Q GY + EEK+ L + F S +D + + + + L+
Sbjct: 518 --QFGYYFRVTCKEEKV----LRNNKNF----STVDIQKNGVKFTNSELSSLNEEYTKNK 567
Query: 464 HKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNN--YMRPILTLE 521
+ + + AI +++V+ + + + + A LD +S A V++ Y+RP++ LE
Sbjct: 568 GEYEEAQDAIVKEIVNISSGYVEPMQTVNDVLAHLDAVVSFAHVSNAAPVPYVRPVI-LE 626
Query: 522 P---LLDIQNGRHVLQEMTVDT-FIPNDTRIDNDGRI-NIITGPNYSGKSIYIKQVALIV 576
+ ++ RH E+ D FIPND + D ++ +IITGPN GKS YI+Q +IV
Sbjct: 627 KGKGRIIVKASRHACVEVQHDVAFIPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVIV 686
Query: 577 FLSHIGSFVPADAATVGLTDS--KHMTAEQS------SFMIDLHQVGMMLRQATSQSLCL 628
++ IG FVP ++A V + D + A S +FM ++ + +LR AT SL +
Sbjct: 687 LMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLII 746
Query: 629 LDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMS 688
+DE G+GT T DG GL Y T ++ + TH EL L + T++
Sbjct: 747 IDELGRGTSTYDGFGLAWAISEYIAT-NIGAFCMFATHFHELT---ALAS----QIPTVN 798
Query: 689 VLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVI---KRAAYVLEAAQN 744
L +T+ E + LY++ G S+G+H A LA P VI K+ A LE Q+
Sbjct: 799 NLHVTALTTE-ETLTMLYQVKTGVCDQSFGIHVAELANFPRHVIECAKQKALELEEFQS 856
Score = 41 (19.5 bits), Expect = 1.3e-32, Sum P(3) = 1.3e-32
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 123 DMGSEVQVRASGGLLAVLENERI 145
DMG QV GG+L + E +RI
Sbjct: 209 DMGKLRQVIQRGGIL-ITERKRI 230
Score = 40 (19.1 bits), Expect = 1.3e-32, Sum P(3) = 1.3e-32
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 11 GHR-VGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQ 52
G R VGV DS+ R+L + E + D N F ++ + Q P+
Sbjct: 157 GQRQVGVGDVDSTQRKLGLCE-FPD-NDQFSNLEALLIQIGPK 197
>TIGR_CMR|SPO_0011 [details] [associations]
symbol:SPO_0011 "DNA mismatch repair protein MutS"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0005524 "ATP binding"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:YP_165284.1
ProteinModelPortal:Q5LWH0 PRIDE:Q5LWH0 GeneID:3194479
KEGG:sil:SPO0011 PATRIC:23373251 Uniprot:Q5LWH0
Length = 877
Score = 337 (123.7 bits), Expect = 1.8e-32, Sum P(2) = 1.8e-32
Identities = 97/316 (30%), Positives = 159/316 (50%)
Query: 447 YHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLAL 506
+ T + EL+ + + + L++E+ + L + + L A AELD +LA
Sbjct: 511 FTTVELSELETRILNAGNHALEIEKRLYSSLSGAVLEQAARLNIAARGLAELDLATALAD 570
Query: 507 VAHQNNYMRPILTLEPLLDIQNGRHVLQEMTV-----DTFIPNDTRI--DNDGRINIITG 559
+A N+ RP + I+ GRH + E + D F+ ND + D I ++TG
Sbjct: 571 LARAENWCRPSVDPSRAFAIEGGRHPVVEHALRRQGGDPFVANDCDLSADKGAAIRLLTG 630
Query: 560 PNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDL 611
PN +GKS Y++Q ALI L+ IGS+VPAD+A +G+ S + +S+FM+++
Sbjct: 631 PNMAGKSTYLRQNALITLLAQIGSYVPADSAHIGVVSQLFSRVGASDDLARGRSTFMVEM 690
Query: 612 HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELL 671
+ +L QA +L +LDE G+GT T DG+ + T+ + + + L TH EL
Sbjct: 691 VETAAILNQADDHALVILDEIGRGTATYDGLSIAWATLEHLHATN-RCRALFATHYHELT 749
Query: 672 N-EGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAE 730
L E L T++V E +++FL+ + G A SYG+ A LAG+P
Sbjct: 750 ALAATLDGVENL---TVAVKEWEG------EVIFLHEVRKGAADRSYGVQVAQLAGLPPS 800
Query: 731 VIKRAAYVLEAAQNNK 746
V+ RA VL+ + ++
Sbjct: 801 VVARARVVLDQLEKSE 816
Score = 102 (41.0 bits), Expect = 1.8e-32, Sum P(2) = 1.8e-32
Identities = 39/167 (23%), Positives = 76/167 (45%)
Query: 107 DGLSIKERICYLNSMMDM-GSEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSVI 165
D ++ ++R+C L + + G RA + L +D L+ + G + V
Sbjct: 207 DSMAAEKRLCELYKVGSLEGFGTFARAELSAMGAL-----IDYLDITQKGKLPLLQPPVQ 261
Query: 166 EVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNW 225
E ++ +++DA L++ + S G + G S+ ++++ VTP G RLL
Sbjct: 262 EAE-DRVMQIDAATRRNLELTR-----SLSG----ERGGSLLSVIDRTVTPGGARLLEQR 311
Query: 226 FLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKK 272
P +L+ +++RL+A+ F + L A L L+ D+ L +
Sbjct: 312 LGSPSRNLDVIHARLSALDFCIDHSTLAADLRAALRKTPDLDRALSR 358
>UNIPROTKB|F1P4E2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006298 "mismatch repair" evidence=IEA] [GO:0030983
"mismatched DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0001541 "ovarian follicle development" evidence=IEA]
[GO:0007129 "synapsis" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0007292 "female gamete generation" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:AADN02012381 IPI:IPI00596754 Ensembl:ENSGALT00000018582
Uniprot:F1P4E2
Length = 846
Score = 385 (140.6 bits), Expect = 3.1e-32, P = 3.1e-32
Identities = 148/587 (25%), Positives = 268/587 (45%)
Query: 200 AKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHET 259
++ G ++FG++N TP G R LR+ L P++D E + +RL+ + FL EEL L
Sbjct: 242 SRNGHTLFGVLNYTRTPGGSRRLRSNILEPLVDAETIKTRLDCVQEFLQDEELFFGLQAV 301
Query: 260 L-KYV--KDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRL 316
+ K++ + + IL + + TA I +++++ E + E L+ LR
Sbjct: 302 ISKFLDTEQLLSILVQIPKQDTVKTAES------KISNIIYLKHTLE--LVEPLKAALRR 353
Query: 317 LNFDIVEKAASCITTE-LAYVYELVIGIIDVNRSKEKGYGTL-------VREGFCDELDE 368
N ++ + + + E + +I+ + KG ++ V+ + LD
Sbjct: 354 CNTSLLRAYYNALEDRRFGIILEKITAVINDDTRYAKGCLSMRTQKCYAVKPNINEFLDI 413
Query: 369 LRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQI-GYLMCIFEEKLDDTTLEQ 427
R+ Y E+ ++++A + + L ++ +P + G+ + + D + L
Sbjct: 414 ARRTYTEI---VDDIAGM----ITQLAEKYNLPLKTSFSSVRGFFI---QMNADCSALPN 463
Query: 428 LQGFEFAFSDMDGETKRLFYHTP----KTRE-LDNLLGDIYHKILDMERAITRDLVSHI- 481
+ F+ + +T+ + T K E L +IYH + + ++ HI
Sbjct: 464 GK-LPSEFTKVT-KTRNTYSFTSADLIKMNERCQESLREIYHMTYLIVCKLLNEIYEHIH 521
Query: 482 CLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRH-VLQEMTVDT 540
CL+ K + + LD LS A ++Y+RP T L I+ G H +L+++ ++
Sbjct: 522 CLY-----KLSDIVSMLDMLLSFAHACTISDYVRPEFT--DTLAIKQGWHPILEKIAMEK 574
Query: 541 FIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAAT--------- 591
+ N+ + IITGPN SGKS YIKQ+AL ++ IGS+VPA+ +
Sbjct: 575 PVSNNAYLTEGSNFLIITGPNMSGKSTYIKQIALCQIMAQIGSYVPAEYCSFRIAEQIFT 634
Query: 592 -VGLTDSKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTIN 650
+G+ D A S+FM ++ ++ +++ A +SL ++DE G+GT E+GIG+
Sbjct: 635 RIGMDDDIETNA--STFMKEMKEITYIIQNANDKSLIIIDELGRGTSAEEGIGICYAACE 692
Query: 651 YFVTCDVPPKVLVCTHLTELLNEGCL-PKSERLKFYTMSVLRPENNSTDVEDIVFLYRLV 709
Y + ++ L TH EL + L P E F V +S E I + Y L
Sbjct: 693 YLL--NLKAFTLFATHFLELCHMDALYPNVENYHFEVQHV----RSSAGKEKITYTYTLS 746
Query: 710 PGHAL-LSYGLHCALLAGVPAEVIKRA-AYVLEAAQNNKHVERWSHE 754
G+ +YGL A ++ +P +I A A A+ H +R + E
Sbjct: 747 KGYTEEKNYGLKAAEVSSLPPSIILDAKAITNHIAKQILHRQRTTPE 793
>UNIPROTKB|A4R0R0 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein MSH3"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0005634
GO:GO:0006298 EMBL:CM001231 GO:GO:0030983 eggNOG:COG0249
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 KO:K08736
OrthoDB:EOG42NN7M RefSeq:XP_003709956.1 STRING:A4R0R0
EnsemblFungi:MGG_09306T0 GeneID:2680221 KEGG:mgr:MGG_09306
Uniprot:A4R0R0
Length = 1151
Score = 354 (129.7 bits), Expect = 3.1e-32, Sum P(2) = 3.1e-32
Identities = 110/356 (30%), Positives = 185/356 (51%)
Query: 409 IGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDI-YHK-- 465
+ Y+ E L + +++ +++ + G K +HTP E+ L+ + HK
Sbjct: 758 VDYVTVAGIEYLIEVPNTEIRKVPASWAKISGTKKLSRFHTP---EVVRLIAERDQHKEA 814
Query: 466 ILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLE---P 522
+ A + +++ I L AV+ A LDC LS A VA Y +PI+ + P
Sbjct: 815 LAAACDAAFKAMLASIADQYQPLRDAVSSLATLDCLLSFAQVAALPGYSKPIILPDSHPP 874
Query: 523 LLDIQNGRHVLQEMTVDT-FIPNDTRIDNDGRI-NIITGPNYSGKSIYIKQVALIVFLSH 580
+ + GRH + E T+ + +IP T + + + +++TGPN GKS +++ +AL+V L+
Sbjct: 875 TIAVAGGRHPIAEHTLPSGYIPFSTTLSSPAPLAHLVTGPNMGGKSSFVRALALLVLLAQ 934
Query: 581 IGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEF 632
+GSFVPAD+ + L+D S ++ A +S+FM+++ + +LR AT +SL LLDE
Sbjct: 935 VGSFVPADSLRLTLSDAIYTRMGASDNLFAGESTFMVEVGETAAILRTATPRSLVLLDEL 994
Query: 633 GKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN--EGC---LPKSERLKFYTM 687
G+GT T DG + +++ V + L TH L EG L ++ ++F T
Sbjct: 995 GRGTSTHDGAAIAHAVLDHVVR-NTRCLTLFITHYQSLARVAEGLGTGLVRNVHMRF-TS 1052
Query: 688 SVLRPENNSTDV-------EDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAA 736
S R +N+ D E+I FLY + G A SYGL+ A LA +P ++++ AA
Sbjct: 1053 S--RDDNDDGDKDQDDDVGENITFLYEVADGVAHRSYGLNVARLARIPRKILEVAA 1106
Score = 86 (35.3 bits), Expect = 3.1e-32, Sum P(2) = 3.1e-32
Identities = 21/76 (27%), Positives = 39/76 (51%)
Query: 168 SLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFL 227
S + ++ T E+L++++ + G S+ ++K T G+R+LR W
Sbjct: 537 STRSHMCINGTTLESLEVYRNSTDHTEKG--------SLLWALDKTRTRFGQRMLRKWLG 588
Query: 228 RPILDLENLNSRLNAI 243
RP+LD E L+ R+ A+
Sbjct: 589 RPLLDKERLDDRVAAV 604
Score = 37 (18.1 bits), Expect = 4.2e-27, Sum P(2) = 4.2e-27
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 407 HQIGYLMCIFE 417
H GYL+C+ E
Sbjct: 366 HSGGYLLCLTE 376
>UNIPROTKB|A2ABE9 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR007696 InterPro:IPR007861
Pfam:PF05190 Pfam:PF05192 SMART:SM00533 GO:GO:0005524 EMBL:AL662899
EMBL:CR759787 GO:GO:0006298 GO:GO:0030983 EMBL:AL662834
EMBL:AL844216 EMBL:CR936239 eggNOG:COG0249 SUPFAM:SSF48334
EMBL:CR925765 UniGene:Hs.647011 HGNC:HGNC:7328 ChiTaRS:MSH5
Ensembl:ENST00000412201 Ensembl:ENST00000425344
Ensembl:ENST00000435942 Ensembl:ENST00000443665
Ensembl:ENST00000450148 Uniprot:A2ABE9
Length = 333
Score = 361 (132.1 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 113/356 (31%), Positives = 180/356 (50%)
Query: 114 RICYLNSMMDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFL 173
+I +L+S++ + VRA GGLL L RI LE N S+ I + L +
Sbjct: 1 KILFLSSIIPFDCLLTVRALGGLLKFLGRRRIGVELEDY---NVSVPILGFKKFMLTHLV 57
Query: 174 KLDATAHEALQIFQTDKHPSHMGIGRA-KEGFSVFGMMNKCVTPMGRRLLRNWFLRPILD 232
+D + LQIF+++ HPS + KEG S+FG++N+C G +LLR WF RP D
Sbjct: 58 NIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHD 117
Query: 233 LENLNSRLNAISFFLCSEEL-MAS-LHETLKYVKDIPHILKKFNSPSFIYT-ASDWTAFL 289
L L+SRL+ I FFL + L MA LH L ++K++P ILK+ +T SDW
Sbjct: 118 LGELSSRLDVIQFFLLPQNLDMAQMLHRLLGHIKNVPLILKRMK---LSHTKVSDWQVLY 174
Query: 290 KSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGI-IDVNR 348
K++ S L + SL + ++L DI ++ + + + + ++ + +D
Sbjct: 175 KTVYSALGLRDA-----CRSLPQSIQLFR-DIAQEFSDDLHHIASLIGKVYLSPQVDFEG 228
Query: 349 SKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVP-C-IVYI 406
S + T++ E+DE ++ LP FL EVA EL L + +P C ++YI
Sbjct: 229 SLAENRFTVL-PNIDPEIDEKKRRLMGLPSFLTEVARKELENL-----DSRIPSCSVIYI 282
Query: 407 HQIGYLMCI--FEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLG 460
IG+L+ I ++ + E + G +F F + +L Y + +T+ELD LLG
Sbjct: 283 PLIGFLLSIPRLPSMVEASDFE-INGLDFMFLSEE----KLHYRSARTKELDALLG 333
>UNIPROTKB|O15457 [details] [associations]
symbol:MSH4 "MutS protein homolog 4" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0001541
"ovarian follicle development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007292 "female gamete
generation" evidence=IEA] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0000795 "synaptonemal complex" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IRD] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0030983
"mismatched DNA binding" evidence=IBA] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0045143 "homologous chromosome
segregation" evidence=IBA] [GO:0051026 "chiasma assembly"
evidence=IBA] [GO:0003677 "DNA binding" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:CH471059 GO:GO:0007283
GO:GO:0006298 EMBL:AL357314 Reactome:REACT_111183 GO:GO:0001541
GO:GO:0030983 EMBL:AL445464 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 KO:K08740 OMA:GFFIQMT Gene3D:3.30.420.110
SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:U89293 EMBL:AF104243
EMBL:AY268350 EMBL:BC033030 IPI:IPI00289914 RefSeq:NP_002431.2
UniGene:Hs.216639 ProteinModelPortal:O15457 SMR:O15457
IntAct:O15457 STRING:O15457 PhosphoSite:O15457 PRIDE:O15457
DNASU:4438 Ensembl:ENST00000263187 GeneID:4438 KEGG:hsa:4438
UCSC:uc001dhd.2 CTD:4438 GeneCards:GC01P076262 HGNC:HGNC:7327
HPA:HPA028117 MIM:602105 neXtProt:NX_O15457 PharmGKB:PA31135
HOGENOM:HOG000290656 HOVERGEN:HBG036910 InParanoid:O15457
OrthoDB:EOG4DR9BS PhylomeDB:O15457 GenomeRNAi:4438 NextBio:17297
ArrayExpress:O15457 Bgee:O15457 CleanEx:HS_MSH4
Genevestigator:O15457 GermOnline:ENSG00000057468 Uniprot:O15457
Length = 936
Score = 385 (140.6 bits), Expect = 3.9e-32, P = 3.9e-32
Identities = 150/558 (26%), Positives = 251/558 (44%)
Query: 201 KEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETL 260
+ ++FG++N TP G R LR+ L P++D+E +N RL+ + L EEL L +
Sbjct: 330 RNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETINMRLDCVQELLQDEELFFGLQSVI 389
Query: 261 KYVKDIPHILK---KFNSPSFIYTA-SDWT--AFLKSICSLLHVNKIFEVGISESLRE-- 312
D +L + + A S T +LK L+ KI + L
Sbjct: 390 SRFLDTEQLLSVLVQIPKQDTVNAAESKITNLIYLKHTLELVDPLKIAMKNCNTPLLRAY 449
Query: 313 --QLRLLNFDIV-EKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDEL 369
L F I+ EK + I + Y+ G + N +K Y VR + LD
Sbjct: 450 YGSLEDKRFGIILEKIKTVINDDARYMK----GCL--NMRTQKCYA--VRSNINEFLDIA 501
Query: 370 RQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQI-GYLMCIFEEKLDDTTLEQL 428
R+ Y E+ ++++A + + L ++ +P G+ + + + + + +QL
Sbjct: 502 RRTYTEI---VDDIAGM----ISQLGEKYSLPLRTSFSSARGFFIQMTTDCIALPS-DQL 553
Query: 429 QGFEFAFSDMDGETKRLFYHTPKTRE-LDNLLGDIYHKILDMERAITRDLVSHI-CLFSD 486
S + K E L +IYH + + ++ HI CL+
Sbjct: 554 PSEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHCLY-- 611
Query: 487 HLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRH-VLQEMTVDTFIPND 545
K + + LD LS A ++Y+RP T L I+ G H +L++++ + I N+
Sbjct: 612 ---KLSDTVSMLDMLLSFAHACTLSDYVRPEFT--DTLAIKQGWHPILEKISAEKPIANN 666
Query: 546 TRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGL---------TD 596
T + IITGPN SGKS Y+KQ+AL ++ IGS+VPA+ ++ + TD
Sbjct: 667 TYVTEGSNFLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAKQIFTRISTD 726
Query: 597 SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCD 656
T S+FM ++ ++ +L A +SL L+DE G+GT TE+GIG+ Y ++
Sbjct: 727 DDIET-NSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEEGIGICYAVCEYLLS-- 783
Query: 657 VPPKVLVCTHLTELLNEGCL-PKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHAL- 714
+ L TH EL + L P E + F V +N S + E I++ Y+L G
Sbjct: 784 LKAFTLFATHFLELCHIDALYPNVENMHFEVQHV---KNTSRNKEAILYTYKLSKGLTEE 840
Query: 715 LSYGLHCALLAGVPAEVI 732
+YGL A ++ +P ++
Sbjct: 841 KNYGLKAAEVSSLPPSIV 858
>UNIPROTKB|Q7S4J6 [details] [associations]
symbol:NCU08135 "DNA mismatch repair protein msh6"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
PIRSF:PIRSF037677 HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
EMBL:AABX02000052 RefSeq:XP_959678.2 UniGene:Ncr.20761
ProteinModelPortal:Q7S4J6 STRING:Q7S4J6
EnsemblFungi:EFNCRT00000008326 GeneID:3875816 KEGG:ncr:NCU08135
Uniprot:Q7S4J6
Length = 1237
Score = 317 (116.6 bits), Expect = 4.7e-32, Sum P(2) = 4.7e-32
Identities = 84/275 (30%), Positives = 140/275 (50%)
Query: 489 LKAVNFAAELDCFLSLALVAHQNNY--MRPILTLEP--LLDIQNGRHVLQEMTVDTFIPN 544
L+A+ ++LDC +SLA + RP+ + +++ RH TVD FIPN
Sbjct: 922 LQAIRIISQLDCLISLAKASSALGQPCCRPVFVNDERTVVEFNELRHPCMLNTVDDFIPN 981
Query: 545 DTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD------- 596
D ++ D IN++TG N +GKS ++ + V ++ IG +VPA +A + D
Sbjct: 982 DIKLGGDEANINLLTGANAAGKSTILRMSCIAVIMAQIGCYVPAVSARLTPVDRIMSRLG 1041
Query: 597 -SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTC 655
+ ++ A QS+F ++L + +L +AT +SL +LDE G+GT + DG+ + +++ V
Sbjct: 1042 ANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHH-VAS 1100
Query: 656 DVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALL 715
+ TH L E ++ M + E N I FLY+L G A
Sbjct: 1101 HIGCVGFFATHYHSLATE--FENHPEIRARRMQIAVDEENKR----ITFLYKLEDGVAEG 1154
Query: 716 SYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVER 750
S+G+HCA + G+P +VI+R+ AA+ +H R
Sbjct: 1155 SFGMHCAAMCGIPDKVIRRSEV---AAKEWEHTSR 1186
Score = 124 (48.7 bits), Expect = 4.7e-32, Sum P(2) = 4.7e-32
Identities = 20/74 (27%), Positives = 41/74 (55%)
Query: 202 EGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLK 261
EG ++F ++N+C+TP G+RL R W P+ +++ LN RL+A+ L +
Sbjct: 665 EG-TLFHLLNRCITPFGKRLFRQWVCHPLCNIQKLNERLDAVDMLNDDHSLREQFSSQMS 723
Query: 262 YVKDIPHILKKFNS 275
+ D+ ++ + ++
Sbjct: 724 KMPDLERLISRIHA 737
>DICTYBASE|DDB_G0268614 [details] [associations]
symbol:msh6 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;ISS] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0032301 "MutSalpha
complex" evidence=ISS;IBA] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0045910 "negative
regulation of DNA recombination" evidence=IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0032138
"single base insertion or deletion binding" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0268614
GO:GO:0005524 GO:GO:0009411 GenomeReviews:CM000150_GR GO:GO:0003684
EMBL:AAFI02000003 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
HSSP:Q56215 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 RefSeq:XP_647085.1 STRING:Q55GU9 PRIDE:Q55GU9
EnsemblProtists:DDB0229918 GeneID:8615889 KEGG:ddi:DDB_G0268614
ProtClustDB:CLSZ2497299 Uniprot:Q55GU9
Length = 1260
Score = 386 (140.9 bits), Expect = 5.4e-32, P = 5.4e-32
Identities = 179/778 (23%), Positives = 337/778 (43%)
Query: 15 GVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQP-QIIYTSTKSEESFLSALKRSDG 73
GV + D SI + ++ + +D N + + Q P +I+Y + +S +KR
Sbjct: 504 GVCFVDVSIGEFYLCTIQDDDNR--MQFETLLLQMMPKEIVYEKGATSPKTISIMKRV-- 559
Query: 74 TTEAPTVKLVKSSIFSYEQAWHRLIYL-RVTGMDDGLSIKERICYLNSMMDMGSEVQVRA 132
TVK V ++ S E W + R+T + G + E +C + + E + A
Sbjct: 560 ---LSTVKPVMNARLSLEY-WDPTDTMERITQLCGGKT-PETLCQMKN-----EEYLMGA 609
Query: 133 SGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQTDKHP 192
GG ++ L + +I +++ ++ A + +++ N + LD L+IF
Sbjct: 610 LGGCISYLMDIKIGNSVVEQ----ARFKRFNPLDIG-NSMI-LDGQCLVNLEIFNNSTDG 663
Query: 193 SHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEEL 252
S EG ++F +M++C T G+R+ R W RP+ + + R AI F S E
Sbjct: 664 S-------TEG-TLFKLMDRCTTAFGKRMFRQWICRPLANKNAIVDRQKAIEFLRDSPET 715
Query: 253 MASLHETLKYVKDIPHILKKFNSPS-----FIYTASDWTAFLKSICSLL-HVNKIFEVGI 306
+ + L + D+ ++ + + + I + + + LL +I + +
Sbjct: 716 LQKVTAILNKLPDLERMIARIRAQTSKISDLISVLNHFDNIHSKLLELLDEAEQIESIHL 775
Query: 307 SESLREQLRLLNFDIVEKAASCITTELAYV-YELVIGIID-VNRSKEKGYGTLV-REGFC 363
L + N DI E+ S + Y Y + I+ V +S +V +G
Sbjct: 776 RSCLFMDNQQDNDDIDEQENSNNNNNIRYSGYPNLKPYIERVRKSFTIEQDRVVPSKGLF 835
Query: 364 DELDE----LRQIYEELPEFLEEVAS---LELVQLPHLCKEMF---VPCIVYIHQIGYLM 413
E D+ ++ + + + LEE + ++ H+ KE++ +P + + + L
Sbjct: 836 LEFDQCLGNIQSLEQSFAKHLEEQKAHFKCNKIEYKHMGKEIYQIEIP-VAFTKK---LP 891
Query: 414 CIFEEKLDDTTLEQLQGFEFAFSDMDGETK-RLFYHTPKTRELDNLLGDIYHKILDMERA 472
F K + + + F ++ + R Y L +L + + A
Sbjct: 892 AGFSLKSSSSKVNRYHS-PFVTKNLTSLLEERDTYEVLSKEVLKKILSNFAIYFNHFQIA 950
Query: 473 ITRDLVSHI-CLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRH 531
IT+ +S + CL S L K V+F + + L + + Q + +D+++ RH
Sbjct: 951 ITK--LSQLDCLLS--LYK-VSFQSSIQMCRPLFVSSDQRGF----------IDVKDMRH 995
Query: 532 -VLQEMTVDTFIPNDTRIDNDGR---INIITGPNYSGKSIYIKQVALIVFLSHIGSFVPA 587
+ + D FIPND ++ + + ++TGPN GKS ++Q ++V ++ +G +V A
Sbjct: 996 PCIYSKSGDDFIPNDISLNTENNPPSLMVLTGPNMGGKSTLLRQSCILVIMAQMGCYVSA 1055
Query: 588 DAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTE 639
+ + + D + ++ A QS+FM++L + +L+ AT +SL +LDE G+GT T
Sbjct: 1056 SSCEMSIVDRIFTRLGANDNILAGQSTFMVELAETSAVLKYATKRSLVILDELGRGTSTF 1115
Query: 640 DGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDV 699
DG + +NY T V + TH L E + + T V +
Sbjct: 1116 DGYSIAYSVLNYLAT-KVQSMCIFATHYQSLAYEPTVRDLISTAYMTCHV------DEEA 1168
Query: 700 EDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERWSHENIS 757
+ ++FLY+L G SYGLH A +AG+P E+I +A + + + + H IS
Sbjct: 1169 KKVIFLYKLASGVCPNSYGLHVASMAGLPREIITKAEEKSTQMEKDSVLVSFIHGTIS 1226
>POMBASE|SPBC19G7.01c [details] [associations]
symbol:msh2 "MutS protein homolog 2" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=ISO] [GO:0000400 "four-way junction DNA binding"
evidence=ISO] [GO:0000403 "Y-form DNA binding" evidence=ISO]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IGI;IMP] [GO:0007534 "gene
conversion at mating-type locus" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IMP] [GO:0000404
"loop DNA binding" evidence=ISO] [GO:0032135 "DNA insertion or
deletion binding" evidence=ISO] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO] [GO:0032138 "single base insertion
or deletion binding" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPBC19G7.01c
GO:GO:0005829 GO:GO:0005524 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0016887 GO:GO:0006298 GO:GO:0030983 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032301 HOGENOM:HOG000196498 KO:K08735
GO:GO:0032302 GO:GO:0000406 OrthoDB:EOG4S7NZ5 EMBL:AJ006948
PIR:T43699 RefSeq:XP_001713136.1 ProteinModelPortal:O74773
STRING:O74773 EnsemblFungi:SPBC19G7.01c.1 GeneID:2540695
KEGG:spo:SPBC19G7.01c OMA:HINERLD NextBio:20801818 GO:GO:0007534
Uniprot:O74773
Length = 982
Score = 263 (97.6 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 82/269 (30%), Positives = 134/269 (49%)
Query: 524 LDIQNGRHVLQEMTVDT-FIPNDTRIDN-DGRINIITGPNYSGKSIYIKQVALIVFLSHI 581
L ++ RH E D FIPND +++ + IITGPN GKS YI+QV +I ++ I
Sbjct: 684 LYLKQARHPCLEAQDDVKFIPNDVNLEHGSSELLIITGPNMGGKSTYIRQVGVITVMAQI 743
Query: 582 GSFVPADAATVGLTDS--KHMTAEQS------SFMIDLHQVGMMLRQATSQSLCLLDEFG 633
G VP + A + + D+ + A S +FM ++ + +LR AT +SL ++DE G
Sbjct: 744 GCPVPCEVADLDIIDAILARVGASDSQLKGISTFMAEMLETATILRAATPRSLIIIDELG 803
Query: 634 KGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTH---LTELLNEGCLPKSERLKFYTMSVL 690
+GT T DG GL + VT + L TH +T+L E K+ + Y
Sbjct: 804 RGTSTTDGFGLAWAITEHIVT-QIGCFCLFATHYHEMTKLSEEITTVKNLHVTAYV---- 858
Query: 691 RPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVER 750
++ +D+ LY + G + S+G+H A LA P ++I+ A+ NK E
Sbjct: 859 ----GDSESKDVALLYNVCEGASDRSFGIHVAKLAHFPPKIIEMAS--------NKAAEL 906
Query: 751 WSHENISAQD-QQYKNAVEKM-LAFDVLK 777
+ ++ + D Q+ K+ E M + D+++
Sbjct: 907 EAEDSGAQGDTQEVKSKKEGMAIVRDIMR 935
Score = 174 (66.3 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 115/545 (21%), Positives = 234/545 (42%)
Query: 14 VGVSYYDSSIRQLHVLE-VWEDSNSDFPLIDIVKYQAQPQIIYTSTKSEESFLSALKRSD 72
+GV++ D +++L V E V D+ ++F + IV+ A+ II S + SA+ S
Sbjct: 159 IGVAFIDPILKKLGVSEFVDSDAYTNFEAL-IVQVGAKECIISQSGHESTNGNSAV--SI 215
Query: 73 GTTEAPTVKLVKSSIFSYEQAWHRLIYLRVTGMDDGLSIKERIC--YLNSMM-DMGSEVQ 129
T E + +++ I + + D L + + + ++++ ++G ++
Sbjct: 216 NTAE---INRLRNIIEGCGALVTTIRSSEFSARDVELELSKVLDSPVTHALVPELGLQLA 272
Query: 130 VRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQTD 189
+ + LL L + +E N S + + +L ++++LD A +L +
Sbjct: 273 MASCNALLRYLGPALLNPDMEDDRE-NTSRKLH-LYHHNLEQYMRLDIAAVRSLNLLPP- 329
Query: 190 KHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCS 249
P+ G A + S++G++N C T MG R LR W ++P+LD +++ R + +S +
Sbjct: 330 --PN----GNAHKTMSLYGLLNHCRTAMGARNLRRWIVQPLLDAKSIERRHDLVSALVED 383
Query: 250 EELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFE--VGIS 307
E L + ++ IP I P + +A L+ + + + K V +
Sbjct: 384 AEARQLLLDDDHLLRSIPDI------PKLCRRLTRGSASLEDVVRIYQMAKALPKIVTVL 437
Query: 308 ESLREQLRLLNFDIVEKAASCITTE----LAYVYELVIGIIDVNRSKEKGYGTLVREGFC 363
+SL + + D+V+K + + L + ELV ID+ Y ++R F
Sbjct: 438 DSLTSEHK----DLVDKVYTNVLNNHCKNLEKLIELVETTIDLEALDSHQY--IIRAEFD 491
Query: 364 DELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCIFEEKLDDT 423
+EL +LRQ +EL + E L H E + + H G+ C+ +L T
Sbjct: 492 EELLDLRQRLDELQHSIFEEHKRVGSDL-HQDTEKKLHLEQH-HLYGW--CL---RLTRT 544
Query: 424 TLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICL 483
L+G ++++ + +++ T + L+N D + + R+++
Sbjct: 545 EAGCLRGRSSHYTELSTQKNGVYFTTKRLHSLNNSYMDHQKSYRYHQNGLAREVIKIAAT 604
Query: 484 FSDHLLKAVNFAAELDCFLSLALVAHQN--NYMRPILTLEPLLDIQNGR--HVLQEMTVD 539
+ L A LD LS A + Y+RP + + ++G+ ++L ++++
Sbjct: 605 YGPPLEAIGQVIAHLDVILSFAHASTVAVIPYVRPNIVDSSIAQEKHGQSSNILDIVSLE 664
Query: 540 TFIPN 544
PN
Sbjct: 665 D-TPN 668
>ASPGD|ASPL0000041666 [details] [associations]
symbol:mshA species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:BN001307 EMBL:AACD01000026 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 PIRSF:PIRSF037677 HOGENOM:HOG000189303
OrthoDB:EOG4F4WK5 RefSeq:XP_659312.1 ProteinModelPortal:Q5BCM2
STRING:Q5BCM2 EnsemblFungi:CADANIAT00008351 GeneID:2874945
KEGG:ani:AN1708.2 Uniprot:Q5BCM2
Length = 1186
Score = 305 (112.4 bits), Expect = 2.0e-31, Sum P(2) = 2.0e-31
Identities = 91/331 (27%), Positives = 159/331 (48%)
Query: 437 DMDGETKRLF-YHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHL---LKAV 492
D TK++ Y+ P+ R L + + + +++ + F +H L AV
Sbjct: 814 DQMSATKQVKRYYFPELRTTIRKLQEAQETHSQIVKEVSKRFYAR---FDEHYSTWLSAV 870
Query: 493 NFAAELDCFLSLALVAHQ--NNYMRPILTLEP--LLDIQNGRHVLQEMTVDTFIPNDTRI 548
++LDC +SLA + RP + +L+ + RH +VD FIPND ++
Sbjct: 871 RVVSQLDCLISLAKASSSLGEPSCRPTFVEDERSVLEFEELRHPCLISSVDDFIPNDIQL 930
Query: 549 DNDG-RINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD--------SKH 599
G I+++TG N +GKS ++ + V ++ +G ++P +A + D + +
Sbjct: 931 GGSGPNIDLLTGANAAGKSTLLRMTCVAVIMAQVGCYLPCRSARLTPVDRIMSRLGANDN 990
Query: 600 MTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPP 659
+ A QS+F ++L + +L +AT +SL +LDE G+GT + DG+ + +++ T +
Sbjct: 991 IFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHHVAT-HIGA 1049
Query: 660 KVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGL 719
TH L E +K M + EN + FLY+L G A S+G+
Sbjct: 1050 LGFFATHYHSLAAE--FENHPEIKPKRMKIHVDENERR----VTFLYKLEDGVAEGSFGM 1103
Query: 720 HCALLAGVPAEVIKRAAYVLEAAQNNKHVER 750
HCA + G+P +VI+RA AA+ +H R
Sbjct: 1104 HCAAMCGIPNKVIERAEV---AAKQWEHTSR 1131
Score = 130 (50.8 bits), Expect = 2.0e-31, Sum P(2) = 2.0e-31
Identities = 39/181 (21%), Positives = 84/181 (46%)
Query: 205 SVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVK 264
++F ++N+C+TP G+R+ + W P++D + +N+RL+A+ + L +
Sbjct: 611 TLFQLLNRCMTPFGKRMFKQWVCHPLVDPQRINARLDAVDALNADSSVRDQFASQLTKMP 670
Query: 265 DIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIF-EVGISESLREQLRLLNFDIVE 323
D+ ++ + ++ + A D+ L+ + + + + G E + QL D+
Sbjct: 671 DLERLISRIHAANC--RAQDFVRVLEGFEQIEYTMSLLKDSGSGEGVIGQLIKSMPDL-- 726
Query: 324 KAASCITTELAYVYELVIGIIDVNRSKEKGYGTL---VREGFCDELDELRQIYEELPEFL 380
TEL ++ D N++KE G V E F + +RQ++++L + L
Sbjct: 727 -------TELLEYWKTAF---DHNQAKESGILVPKPGVEEDFDSSQETIRQLHQDLDDLL 776
Query: 381 E 381
+
Sbjct: 777 K 777
>UNIPROTKB|Q5BCM2 [details] [associations]
symbol:AN1708.2 "Protein required for mismatch repair in
mitosis and meiosis (Eurofung)" species:227321 "Aspergillus
nidulans FGSC A4" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:BN001307 EMBL:AACD01000026 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 PIRSF:PIRSF037677 HOGENOM:HOG000189303
OrthoDB:EOG4F4WK5 RefSeq:XP_659312.1 ProteinModelPortal:Q5BCM2
STRING:Q5BCM2 EnsemblFungi:CADANIAT00008351 GeneID:2874945
KEGG:ani:AN1708.2 Uniprot:Q5BCM2
Length = 1186
Score = 305 (112.4 bits), Expect = 2.0e-31, Sum P(2) = 2.0e-31
Identities = 91/331 (27%), Positives = 159/331 (48%)
Query: 437 DMDGETKRLF-YHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHL---LKAV 492
D TK++ Y+ P+ R L + + + +++ + F +H L AV
Sbjct: 814 DQMSATKQVKRYYFPELRTTIRKLQEAQETHSQIVKEVSKRFYAR---FDEHYSTWLSAV 870
Query: 493 NFAAELDCFLSLALVAHQ--NNYMRPILTLEP--LLDIQNGRHVLQEMTVDTFIPNDTRI 548
++LDC +SLA + RP + +L+ + RH +VD FIPND ++
Sbjct: 871 RVVSQLDCLISLAKASSSLGEPSCRPTFVEDERSVLEFEELRHPCLISSVDDFIPNDIQL 930
Query: 549 DNDG-RINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD--------SKH 599
G I+++TG N +GKS ++ + V ++ +G ++P +A + D + +
Sbjct: 931 GGSGPNIDLLTGANAAGKSTLLRMTCVAVIMAQVGCYLPCRSARLTPVDRIMSRLGANDN 990
Query: 600 MTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPP 659
+ A QS+F ++L + +L +AT +SL +LDE G+GT + DG+ + +++ T +
Sbjct: 991 IFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHHVAT-HIGA 1049
Query: 660 KVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGL 719
TH L E +K M + EN + FLY+L G A S+G+
Sbjct: 1050 LGFFATHYHSLAAE--FENHPEIKPKRMKIHVDENERR----VTFLYKLEDGVAEGSFGM 1103
Query: 720 HCALLAGVPAEVIKRAAYVLEAAQNNKHVER 750
HCA + G+P +VI+RA AA+ +H R
Sbjct: 1104 HCAAMCGIPNKVIERAEV---AAKQWEHTSR 1131
Score = 130 (50.8 bits), Expect = 2.0e-31, Sum P(2) = 2.0e-31
Identities = 39/181 (21%), Positives = 84/181 (46%)
Query: 205 SVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVK 264
++F ++N+C+TP G+R+ + W P++D + +N+RL+A+ + L +
Sbjct: 611 TLFQLLNRCMTPFGKRMFKQWVCHPLVDPQRINARLDAVDALNADSSVRDQFASQLTKMP 670
Query: 265 DIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIF-EVGISESLREQLRLLNFDIVE 323
D+ ++ + ++ + A D+ L+ + + + + G E + QL D+
Sbjct: 671 DLERLISRIHAANC--RAQDFVRVLEGFEQIEYTMSLLKDSGSGEGVIGQLIKSMPDL-- 726
Query: 324 KAASCITTELAYVYELVIGIIDVNRSKEKGYGTL---VREGFCDELDELRQIYEELPEFL 380
TEL ++ D N++KE G V E F + +RQ++++L + L
Sbjct: 727 -------TELLEYWKTAF---DHNQAKESGILVPKPGVEEDFDSSQETIRQLHQDLDDLL 776
Query: 381 E 381
+
Sbjct: 777 K 777
>UNIPROTKB|I3L5Z8 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110 SUPFAM:SSF48334
SUPFAM:SSF53150 EMBL:CU929611 EMBL:FP312934
Ensembl:ENSSSCT00000023892 Uniprot:I3L5Z8
Length = 902
Score = 320 (117.7 bits), Expect = 2.2e-31, Sum P(2) = 2.2e-31
Identities = 89/286 (31%), Positives = 146/286 (51%)
Query: 459 LGDIYHKILDMERAITRDLVSHI-CLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPI 517
L +IYH + + ++ HI CL+ K + + LD LS A ++Y+RP
Sbjct: 551 LREIYHMTYMIVCKLLSEIYEHIHCLY-----KLSDTVSMLDMLLSFAHACTLSDYVRPE 605
Query: 518 LTLEPLLDIQNGRH-VLQEMTVDTFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIV 576
T L I+ G H +L++++V+ + N+T I IITGPN SGKS Y+KQ+AL
Sbjct: 606 FT--DTLAIKQGWHPILEKISVEKPVANNTYITEGSNFVIITGPNMSGKSTYLKQIALCQ 663
Query: 577 FLSHIGSFVPADAATVGLTDS--------KHMTAEQSSFMIDLHQVGMMLRQATSQSLCL 628
++ IGS+VPA+ ++ + + + S+FM ++ ++ +L A +SL L
Sbjct: 664 IMAQIGSYVPAEYSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLIL 723
Query: 629 LDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCL-PKSERLKFYTM 687
+DE G+GT TE+GIG+ Y ++ + L TH EL + L P E + F
Sbjct: 724 IDELGRGTNTEEGIGICYAVCEYLLS--LKAFTLFATHFLELCHIDVLYPNVENMYFEVQ 781
Query: 688 SVLRPENNSTDVEDIVFLYRLVPGHAL-LSYGLHCALLAGVPAEVI 732
V +N S + E I++ Y+L G +YGL A + +P ++
Sbjct: 782 HV---KNTSRNKEAILYTYKLSKGLTEEKNYGLKAAEASSLPPSIV 824
Score = 110 (43.8 bits), Expect = 2.2e-31, Sum P(2) = 2.2e-31
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 200 AKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHET 259
++ ++FG++N TP G R LR+ L P++D+E +N RL+ + L EEL L
Sbjct: 289 SRNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETINMRLDCVQELLQDEELFFGLQSV 348
Query: 260 LKYVKDIPHIL 270
+ D +L
Sbjct: 349 IARFLDTEQLL 359
Score = 40 (19.1 bits), Expect = 4.7e-24, Sum P(2) = 4.7e-24
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 253 MASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKS 291
+A++ LKY++ I + L S + S+ TA + S
Sbjct: 236 LAAVAALLKYIEFIQNSLYAPKSLKICFQGSEQTAMIDS 274
Score = 37 (18.1 bits), Expect = 9.7e-24, Sum P(2) = 9.7e-24
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 21 SSIRQLHVLEVWEDSNSDFPLIDIVKYQAQP 51
SS + L +L +DS ++ L ++ Y P
Sbjct: 275 SSAQNLELLINNQDSRNNHTLFGVLNYTKTP 305
>UNIPROTKB|F1RF09 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0019237 "centromeric
DNA binding" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0019237 GO:GO:0003697 GO:GO:0043570
GO:GO:0045910 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032302
GO:GO:0032181 GO:GO:0032357 GO:GO:0032142 GO:GO:0051096 OMA:KRTKSIY
GO:GO:0016447 GeneTree:ENSGT00550000074949 EMBL:CU927965
EMBL:CU928503 Ensembl:ENSSSCT00000015430 Uniprot:F1RF09
Length = 1126
Score = 379 (138.5 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 168/594 (28%), Positives = 273/594 (45%)
Query: 171 KFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPI 230
+F+ ++ T L+I Q G S+F +++ T GRR L+ W +P+
Sbjct: 521 EFMTINGTTLRNLEILQNQTDMKTKG--------SLFWVLDHTKTSFGRRKLKKWVTQPL 572
Query: 231 LDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTA-FL 289
L L +N+RL+A+S + SE + E+ +++ +P I + S IY T F
Sbjct: 573 LKLREINARLDAVSEVVHSESSVFGQIES--HLRKLPDIERGLCS---IYHKKCSTQEFF 627
Query: 290 KSICSLLHVNKIFEVGI-SESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNR 348
+ +L H+ F+ I + + Q LL ++E EL E + I++
Sbjct: 628 LIVKTLYHLKSEFQALIPAVNSHVQSNLLQTCLLE------IPELLSPVEHYLKILNEQA 681
Query: 349 SKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQ 408
+K G T E F D L + I + E ++EV + L + K + P Y+
Sbjct: 682 AKN-GDKT---ELFKD-LSDFPVIKKRKDE-IQEVTNKIQTHLQEIRKILKNPSAQYVTV 735
Query: 409 IGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLF-YHTPKTRELDNLLGDIYHK-I 466
G I E K + + G TK + +H+P E L + + +
Sbjct: 736 SGQEFMI-EVKNSAVSCIPTDWVKV------GSTKAVSRFHSPFIVENYRHLNQLREQLV 788
Query: 467 LDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDI 526
LD A D + + L KAV+ A DC SLA VA Q +Y RP L E + I
Sbjct: 789 LDCS-AEWLDFLENFSEHYHSLCKAVHHLATADCIFSLAKVAKQGDYCRPTLQEERKIVI 847
Query: 527 QNGRHVLQEMTV---DTFIPNDTRIDNDGRINII-TGPNYSGKSIYIKQVALIV-FLSHI 581
+NGRH + ++ + D ++PN T + ++++ GP+ + + K + LI L+ +
Sbjct: 848 KNGRHPVIDVLLGEQDQYVPNSTDLSEWSELSLVLVGPSRGIRGNFFKIIRLINHILALM 907
Query: 582 GSFVP-ADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEF 632
FV A+ + + + D + ++ +S+FM +L ++R+ATSQSL +LDE
Sbjct: 908 ALFVILAEESWLFVLDFFFIRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDEL 967
Query: 633 GKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKS--ERLKFYTMSVL 690
G+GT T DGI + T+ +F+ DV L TH + L KS +++ Y M L
Sbjct: 968 GRGTSTHDGIAIAYATLEHFIR-DVKSLTLFVTHYPPVCE---LEKSYSQQVGNYHMGFL 1023
Query: 691 RPENNSTD-------VEDIV-FLYRLVPGHALLSYGLHCALLAGVPAEVIKRAA 736
E+ S V D V FLY++ G A SYGL+ A LA VP E++K+AA
Sbjct: 1024 VNEDESKQDPGEEDKVPDFVTFLYQITRGSAARSYGLNVAKLADVPGEILKKAA 1077
>UNIPROTKB|E1BK76 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007129 "synapsis"
evidence=IEA] [GO:0001541 "ovarian follicle development"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:DAAA02008282 EMBL:DAAA02008283 EMBL:DAAA02008284
IPI:IPI00710010 Ensembl:ENSBTAT00000024552 Uniprot:E1BK76
Length = 855
Score = 387 (141.3 bits), Expect = 2.7e-31, Sum P(2) = 2.7e-31
Identities = 151/590 (25%), Positives = 261/590 (44%)
Query: 200 AKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHET 259
++ ++FG++N TP G R LR+ L P++D+E +N RL+ + L EEL L
Sbjct: 248 SRNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDVETINMRLDCVQELLQDEELFFGLQSV 307
Query: 260 LKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFE---VGISESLREQLRL 316
+ D +L T + + + ++ L H ++ + + + LR
Sbjct: 308 IARFLDTEQLLSVLVQIPKQDTVNVAESKITNLICLKHTLELVDPLKITLKNCNTPLLRA 367
Query: 317 LNFDIVEKAASCITTELAYVYELVIGIID--VNRSKEKGYGTLVREGFCDELDELRQIYE 374
+ +K I ++ V + +N +K Y VR + LD R+ Y
Sbjct: 368 YYGSLEDKRFGIILDKIKTVINDDARYMKGCLNMRTQKCYA--VRSNINEFLDIARRTYT 425
Query: 375 ELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQI-GYLMCIFEEKLDDTTL--EQLQGF 431
E+ ++++A + + L ++ +P G+ + + D T L +QL
Sbjct: 426 EI---VDDIAGM----ITQLAEKYSLPLRTSFSSARGFFI---QMTTDCTVLPNDQLPSE 475
Query: 432 EFAFSDMDGETKRLFYHTPKTRE-LDNLLGDIYHKILDMERAITRDLVSHI-CLFSDHLL 489
S + K E L +IYH + + ++ HI CL+
Sbjct: 476 FIKISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHCLY----- 530
Query: 490 KAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRH-VLQEMTVDTFIPNDTRI 548
K + + LD LS A ++Y+RP T L I+ G H +L+ ++V+ + N+T I
Sbjct: 531 KLSDTVSMLDMLLSFAHACTLSDYVRPEFT--DTLAIKQGWHPILERISVEKPVANNTYI 588
Query: 549 DNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS--------KHM 600
IITGPN SGKS Y+KQ+AL ++ IGS+VPA+ ++ + + +
Sbjct: 589 TEGSNFFIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAEQIFTRISTDDDI 648
Query: 601 TAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPK 660
S+FM ++ +V +L A +SL L+DE G+GT TE+GIG+ + ++ +
Sbjct: 649 ETNSSTFMKEMKEVAYILHNANDKSLILIDELGRGTNTEEGIGICYAVCEHLLS--LKAF 706
Query: 661 VLVCTHLTELLNEGCL-PKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHAL-LSYG 718
L TH EL L P E + F V +N S + E I++ Y+L G +YG
Sbjct: 707 TLFATHFLELCQIDVLYPNVENMHFEVQHV---KNTSRNKEAILYTYKLSKGLTEEKNYG 763
Query: 719 LHCALLAGVPAEVIKRAAYVLEAAQNNKHVERWSHENI-SAQDQQYKNAV 767
L A ++ +P + VL+A + R +N SA + + + AV
Sbjct: 764 LKAAEVSSLPPSI------VLDAKDITTQITRQILQNQRSAPEMERQRAV 807
Score = 37 (18.1 bits), Expect = 2.7e-31, Sum P(2) = 2.7e-31
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 21 SSIRQLHVLEVWEDSNSDFPLIDIVKYQAQP 51
SS + L +L +DS ++ L ++ Y P
Sbjct: 234 SSAQNLELLINNQDSRNNHTLFGVLNYTKTP 264
>ASPGD|ASPL0000073909 [details] [associations]
symbol:AN10621 species:162425 "Emericella nidulans"
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000404 "loop DNA
binding" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0000406 "double-strand/single-strand DNA
junction binding" evidence=IEA] [GO:0032138 "single base insertion
or deletion binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IEA]
[GO:0006311 "meiotic gene conversion" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0000735 "removal of nonhomologous ends" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0036297
"interstrand cross-link repair" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006200 GO:GO:0016887 GO:GO:0030466 GO:GO:0006298
EMBL:BN001303 GO:GO:0000228 GO:GO:0000403 GO:GO:0006311
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0032301
GO:GO:0032138 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GO:GO:0000735 EnsemblFungi:CADANIAT00005387 Uniprot:C8V8L9
Length = 945
Score = 376 (137.4 bits), Expect = 5.1e-31, Sum P(2) = 5.1e-31
Identities = 156/629 (24%), Positives = 274/629 (43%)
Query: 169 LNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLR 228
L +++KLDA A AL + + S + S+FG++N C TP+G RLL W +
Sbjct: 292 LAQYMKLDAAALRALNLMPGPRDGS--------KSMSLFGLLNHCKTPVGSRLLAQWLKQ 343
Query: 229 PILDLENLNSRLNAISFFLCSEELMASLHET-LKYVKDIPHILKKFNSPSFIYTASDWTA 287
P++DL + R + F+ S EL + E L+ + D+ + K+F D
Sbjct: 344 PLMDLAEIEKRQRLVEAFVVSTELRQMMQEEHLRSIPDLYRLAKRFQRKQA--NLEDVVR 401
Query: 288 FLKSICSLL-HVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDV 346
+ L VN + V + E + L + K + + LA + E+V +D+
Sbjct: 402 VYQVAIRLPGFVNSLENV-MDEEYQTPLET---EYTAKLRNH-SASLAKLEEMVETTVDL 456
Query: 347 NRSKEKGYGTLVREGFCDELDELRQIYEELPE--FLEEVA-SLELVQLPHLCKEMFVPCI 403
+ + + +++ F D L +R+ ++L +LE A + +L Q + K++F+
Sbjct: 457 DALENHEF--IIKPEFDDSLRIIRKKLDQLRHDMYLEHKAVARDLDQ--EMDKKLFLEN- 511
Query: 404 VYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIY 463
H++ Y C + + + + ++ + +G RE D L + Y
Sbjct: 512 ---HRV-YGWCFRLTRNEAGCIRNKKAYQECSTQKNGVYFTTSTMQSLRREHDQLSSN-Y 566
Query: 464 HKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVA-HQNN-YMRPILTLE 521
++ + + ++V+ + L + A LD +S A + H Y +P +
Sbjct: 567 NRT---QTGLVSEVVNVAASYCPVLEQLAGVLAHLDVIVSFAHASVHAPTAYTKPKIHPR 623
Query: 522 PLLD--IQNGRHVLQEMTVD-TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF 577
+ ++ RH EM D +FI ND + D IITGPN GKS YI+ + +I
Sbjct: 624 GTGNTVLKEARHPCMEMQDDISFITNDVSLIRDESSFLIITGPNMGGKSTYIRMIGVIAL 683
Query: 578 LSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLL 629
++ IG FVP A + + D S S+FM ++ + +L+ ATS+SL ++
Sbjct: 684 MAQIGCFVPCTEAELTIFDCILARVGASDSQLKGVSTFMAEMLETSNILKSATSESLIII 743
Query: 630 DEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN-EGCLPKSER----LKF 684
DE G+GT T DG GL + VT ++ L TH EL PKS + + F
Sbjct: 744 DELGRGTSTYDGFGLAWAISEHIVT-EIRCFGLFATHFHELTTLADRYPKSVKNLHVVAF 802
Query: 685 YTMSVLRPENNSTDV----EDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLE 740
E + + + + LYR+ PG S+G+H A L P +V+ A E
Sbjct: 803 IGDGTTANEEDEKEKRKTRQKVTLLYRVEPGICDQSFGIHVAELVRFPEKVVNMARQKAE 862
Query: 741 AAQNNKHVERWSHENISAQDQQYKNAVEK 769
++ + + + D+ + VE+
Sbjct: 863 ELEDFTSADSAGNAASATIDKYSQEEVEE 891
Score = 48 (22.0 bits), Expect = 5.1e-31, Sum P(2) = 5.1e-31
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 14 VGVSYYDSSIRQLHVLEVWE-DSNSDFPLIDI 44
VGV + D+S+R+L V E + D S+F + I
Sbjct: 159 VGVCFADASVRELGVSEFLDNDVYSNFEALVI 190
>UNIPROTKB|F1S9R2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007129 "synapsis"
evidence=IEA] [GO:0001541 "ovarian follicle development"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:CU929611
EMBL:FP312934 Ensembl:ENSSSCT00000004176 Uniprot:F1S9R2
Length = 934
Score = 320 (117.7 bits), Expect = 1.0e-30, Sum P(3) = 1.0e-30
Identities = 89/286 (31%), Positives = 146/286 (51%)
Query: 459 LGDIYHKILDMERAITRDLVSHI-CLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPI 517
L +IYH + + ++ HI CL+ K + + LD LS A ++Y+RP
Sbjct: 583 LREIYHMTYMIVCKLLSEIYEHIHCLY-----KLSDTVSMLDMLLSFAHACTLSDYVRPE 637
Query: 518 LTLEPLLDIQNGRH-VLQEMTVDTFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIV 576
T L I+ G H +L++++V+ + N+T I IITGPN SGKS Y+KQ+AL
Sbjct: 638 FT--DTLAIKQGWHPILEKISVEKPVANNTYITEGSNFVIITGPNMSGKSTYLKQIALCQ 695
Query: 577 FLSHIGSFVPADAATVGLTDS--------KHMTAEQSSFMIDLHQVGMMLRQATSQSLCL 628
++ IGS+VPA+ ++ + + + S+FM ++ ++ +L A +SL L
Sbjct: 696 IMAQIGSYVPAEYSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLIL 755
Query: 629 LDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCL-PKSERLKFYTM 687
+DE G+GT TE+GIG+ Y ++ + L TH EL + L P E + F
Sbjct: 756 IDELGRGTNTEEGIGICYAVCEYLLS--LKAFTLFATHFLELCHIDVLYPNVENMYFEVQ 813
Query: 688 SVLRPENNSTDVEDIVFLYRLVPGHAL-LSYGLHCALLAGVPAEVI 732
V +N S + E I++ Y+L G +YGL A + +P ++
Sbjct: 814 HV---KNTSRNKEAILYTYKLSKGLTEEKNYGLKAAEASSLPPSIV 856
Score = 110 (43.8 bits), Expect = 1.0e-30, Sum P(3) = 1.0e-30
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 200 AKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHET 259
++ ++FG++N TP G R LR+ L P++D+E +N RL+ + L EEL L
Sbjct: 327 SRNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETINMRLDCVQELLQDEELFFGLQSV 386
Query: 260 LKYVKDIPHIL 270
+ D +L
Sbjct: 387 IARFLDTEQLL 397
Score = 40 (19.1 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 253 MASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKS 291
+A++ LKY++ I + L S + S+ TA + S
Sbjct: 274 LAAVAALLKYIEFIQNSLYAPKSLKICFQGSEQTAMIDS 312
Score = 39 (18.8 bits), Expect = 1.0e-30, Sum P(3) = 1.0e-30
Identities = 9/48 (18%), Positives = 22/48 (45%)
Query: 307 SESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGY 354
S L+ +++ +N + SC Y + I I++ N +++ +
Sbjct: 456 SNLLKNKIKRVNTQGIYYICSCTVIFTIQFYRISIPIMEYNLHRKRNH 503
Score = 37 (18.1 bits), Expect = 3.6e-23, Sum P(3) = 3.6e-23
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 21 SSIRQLHVLEVWEDSNSDFPLIDIVKYQAQP 51
SS + L +L +DS ++ L ++ Y P
Sbjct: 313 SSAQNLELLINNQDSRNNHTLFGVLNYTKTP 343
>FB|FBgn0036486 [details] [associations]
symbol:Msh6 "Msh6" species:7227 "Drosophila melanogaster"
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006301 "postreplication
repair" evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IMP] [GO:0032138
"single base insertion or deletion binding" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009411 GO:GO:0008630 EMBL:AE014296 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 EMBL:BT050543 RefSeq:NP_648755.1 UniGene:Dm.966
ProteinModelPortal:Q9VUM0 SMR:Q9VUM0 DIP:DIP-23712N
MINT:MINT-323400 STRING:Q9VUM0 PaxDb:Q9VUM0
EnsemblMetazoa:FBtr0075646 GeneID:39654 KEGG:dme:Dmel_CG7003
UCSC:CG7003-RA CTD:2956 FlyBase:FBgn0036486
GeneTree:ENSGT00550000075024 InParanoid:Q9VUM0 OrthoDB:EOG4PNVXR
PhylomeDB:Q9VUM0 GenomeRNAi:39654 NextBio:814711 Bgee:Q9VUM0
GermOnline:CG7003 Uniprot:Q9VUM0
Length = 1190
Score = 321 (118.1 bits), Expect = 1.2e-30, Sum P(4) = 1.2e-30
Identities = 95/320 (29%), Positives = 156/320 (48%)
Query: 438 MDGETK----RLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHIC-LFSDHL---L 489
++G+TK Y T +TR L L D+ H D + +DL + FS+H
Sbjct: 829 LEGQTKGKKPSRRYTTAETRAL---LKDMQHAE-DTRNMVLKDLARRLFEKFSNHYDQWK 884
Query: 490 KAVNFAAELDCFLSLALVAHQNNYMR-PILTLE---PLLDIQNGRHVLQEMTVDTFIPND 545
+ ++ A LD SLA A Q + P L + P + ++ G H + T+IPN
Sbjct: 885 QCIDCVANLDVLGSLAEYAGQQMVICVPELVSDADQPFIQLEEGYHPCANAS--TYIPNG 942
Query: 546 TRID--NDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD------- 596
+ ++ ++++TGPN GKS +++V L+V ++ IG+ +PA + + L D
Sbjct: 943 LELGTASEAPLSLLTGPNMGGKSTLMREVGLLVIMAQIGAHIPAASCRLSLVDRIFTRLG 1002
Query: 597 -SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTC 655
+ A S+F+++L++ ++L+ AT SL LLDE G+GT T DG + +N+
Sbjct: 1003 AQDDILAGHSTFLVELNETSLILKHATCHSLVLLDELGRGTATYDGTAIAASVVNFLA-- 1060
Query: 656 DVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALL 715
++ + L TH L++ K L V +N E + FLY+ G
Sbjct: 1061 NLKCRTLFSTHYHNLIDFFHNDKRITLGHMACMVENEDNADPTQETVTFLYKYTAGACPK 1120
Query: 716 SYGLHCALLAGVPAEVIKRA 735
SYG + A LAG+P +IKRA
Sbjct: 1121 SYGFNAAKLAGMPQGIIKRA 1140
Score = 73 (30.8 bits), Expect = 1.2e-30, Sum P(4) = 1.2e-30
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 202 EGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAI 243
E S+ ++ C T G+RLL +W P D+ + R +AI
Sbjct: 594 EEHSLLSTLDHCCTKFGKRLLHHWLCAPSCDVSVIKERQDAI 635
Score = 68 (29.0 bits), Expect = 1.2e-30, Sum P(4) = 1.2e-30
Identities = 31/116 (26%), Positives = 51/116 (43%)
Query: 344 IDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCI 403
+ V + ++ G L+R EL E+R + +P+F +A + L + K+M P
Sbjct: 625 VSVIKERQDAIGELIR--MPTELQEVRALLAPMPDFERNLAQIHLFGNKQI-KQMDHPDS 681
Query: 404 VYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKR-LFYHTPKTRELDNL 458
I +FEEKL + ++LQGF + TK +H KT L +
Sbjct: 682 RAI--------LFEEKLYNK--QKLQGFMAVLKGFNDLTKLPTMFHQCKTTLLKRI 727
Score = 54 (24.1 bits), Expect = 1.2e-30, Sum P(4) = 1.2e-30
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 13 RVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKS 60
R GV + D+SI H+ E +D N L+ +V + P +++ + KS
Sbjct: 406 RYGVCFIDTSIGDFHLGEFEDDKNCS-RLLTLVSHH-MP-VLFLNEKS 450
Score = 43 (20.2 bits), Expect = 4.6e-24, Sum P(2) = 4.6e-24
Identities = 12/62 (19%), Positives = 30/62 (48%)
Query: 19 YDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSEESFLSALKRSDGTTEAP 78
++ ++ Q+H+ + D P + ++ + +Y K + F++ LK + T+ P
Sbjct: 658 FERNLAQIHLFGNKQIKQMDHPDSRAILFEEK---LYNKQKLQ-GFMAVLKGFNDLTKLP 713
Query: 79 TV 80
T+
Sbjct: 714 TM 715
Score = 41 (19.5 bits), Expect = 7.4e-24, Sum P(2) = 7.4e-24
Identities = 30/111 (27%), Positives = 49/111 (44%)
Query: 294 SLLHVNKIFEVGISESLREQ--LRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKE 351
S LHV + F G+S +R+ L+ N+D V + ++ YEL DV + E
Sbjct: 249 STLHVPEKFLNGLSPGVRQWWVLKSDNYDCV------LFFKVGKFYELYHMDADVGVN-E 301
Query: 352 KGY----GTLVREGFCD-ELDELRQIYEELPEFLEEVASLELVQLPHLCKE 397
G+ G GF + D++ I + F +VA +E + P + E
Sbjct: 302 LGFTYMRGEFAHSGFPEISFDKMSTILVDRG-F--KVARVEQTETPDMMTE 349
>ZFIN|ZDB-GENE-060526-307 [details] [associations]
symbol:msh3 "mutS homolog 3 (E. coli)" species:7955
"Danio rerio" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534
ZFIN:ZDB-GENE-060526-307 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 GeneTree:ENSGT00550000074949
EMBL:CR381619 IPI:IPI00805026 Ensembl:ENSDART00000092285
Uniprot:F1QCN5
Length = 950
Score = 345 (126.5 bits), Expect = 1.7e-30, Sum P(2) = 1.7e-30
Identities = 88/220 (40%), Positives = 127/220 (57%)
Query: 447 YHTPKTRELDNLLGDIYHK-ILDMERAITRDLVSHICLFSDH---LLKAVNFAAELDCFL 502
YHTP E L + + ++D + ++ + LF DH L KAV A +DC
Sbjct: 735 YHTPFIVEKHRRLQQLREQLVIDCNH----EWINFLQLFGDHYYILRKAVCHLATMDCLF 790
Query: 503 SLALVAHQNNYMRP-ILTLEPLLDIQNGRH-VLQEMT--VDTFIPNDTRIDNDG-RINII 557
SLA VA +NNY RP +L + + I G+H V+ + D ++PNDT + DG R II
Sbjct: 791 SLAQVAKENNYCRPEVLEEKSQILITAGKHPVITSLMGDQDQYVPNDTHLQGDGKRAMII 850
Query: 558 TGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMI 609
TGPN GKS YI+QVAL+ ++ +GSFVPA A+VG+ D S +++ +S+FM
Sbjct: 851 TGPNMGGKSSYIRQVALVTIMAQLGSFVPAREASVGIVDGIYVRMGASDNISRGRSTFME 910
Query: 610 DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTI 649
+L + +L ATS+SL +LDE G+GT T DGI + T+
Sbjct: 911 ELLETSDVLACATSRSLVILDELGRGTSTHDGIAIAYATL 950
Score = 76 (31.8 bits), Expect = 1.7e-30, Sum P(2) = 1.7e-30
Identities = 17/63 (26%), Positives = 35/63 (55%)
Query: 205 SVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEE-LMASLHETLKYV 263
S+ +++ T G+RLLR W +P+ + ++ +R A++ L SE ++ S+ L +
Sbjct: 518 SLLWVLDHTQTLFGKRLLRKWVSQPLKSVIDIQARQEAVAEILSSESSVLPSIQSLLTRL 577
Query: 264 KDI 266
D+
Sbjct: 578 PDL 580
Score = 40 (19.1 bits), Expect = 1.0e-26, Sum P(2) = 1.0e-26
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 41 LIDIVKYQAQ-------PQIIYTSTKSEESFLSALKRSD-GTTEAPTVKLVKSSIF 88
L+DI++++ + P + YT T S + FL +K S A VK+ + +F
Sbjct: 678 LLDIMEHRREVRLLLKNPSLDYT-TVSGQQFLIEVKNSMLSIVPADWVKISSTKVF 732
>UNIPROTKB|Q5B374 [details] [associations]
symbol:AN5006.2 "Putative uncharacterized protein"
species:227321 "Aspergillus nidulans FGSC A4" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007720 InterPro:IPR007860
InterPro:IPR007861 Pfam:PF00488 Pfam:PF01624 Pfam:PF05024
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0016021 GO:GO:0005524
GO:GO:0003684 GO:GO:0030466 GO:GO:0006506 EMBL:AACD01000084
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0008094 GO:GO:0006311 GO:GO:0017176
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 HOGENOM:HOG000196498
KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
OrthoDB:EOG4S7NZ5 GO:GO:0000735 RefSeq:XP_662610.1
ProteinModelPortal:Q5B374 STRING:Q5B374 GeneID:2872806
KEGG:ani:AN5006.2 Uniprot:Q5B374
Length = 1644
Score = 376 (137.4 bits), Expect = 3.4e-30, Sum P(2) = 3.4e-30
Identities = 156/629 (24%), Positives = 274/629 (43%)
Query: 169 LNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLR 228
L +++KLDA A AL + + S + S+FG++N C TP+G RLL W +
Sbjct: 292 LAQYMKLDAAALRALNLMPGPRDGS--------KSMSLFGLLNHCKTPVGSRLLAQWLKQ 343
Query: 229 PILDLENLNSRLNAISFFLCSEELMASLHET-LKYVKDIPHILKKFNSPSFIYTASDWTA 287
P++DL + R + F+ S EL + E L+ + D+ + K+F D
Sbjct: 344 PLMDLAEIEKRQRLVEAFVVSTELRQMMQEEHLRSIPDLYRLAKRFQRKQA--NLEDVVR 401
Query: 288 FLKSICSLL-HVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDV 346
+ L VN + V + E + L + K + + LA + E+V +D+
Sbjct: 402 VYQVAIRLPGFVNSLENV-MDEEYQTPLET---EYTAKLRNH-SASLAKLEEMVETTVDL 456
Query: 347 NRSKEKGYGTLVREGFCDELDELRQIYEELPE--FLEEVA-SLELVQLPHLCKEMFVPCI 403
+ + + +++ F D L +R+ ++L +LE A + +L Q + K++F+
Sbjct: 457 DALENHEF--IIKPEFDDSLRIIRKKLDQLRHDMYLEHKAVARDLDQ--EMDKKLFLEN- 511
Query: 404 VYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIY 463
H++ Y C + + + + ++ + +G RE D L + Y
Sbjct: 512 ---HRV-YGWCFRLTRNEAGCIRNKKAYQECSTQKNGVYFTTSTMQSLRREHDQLSSN-Y 566
Query: 464 HKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVA-HQNN-YMRPILTLE 521
++ + + ++V+ + L + A LD +S A + H Y +P +
Sbjct: 567 NRT---QTGLVSEVVNVAASYCPVLEQLAGVLAHLDVIVSFAHASVHAPTAYTKPKIHPR 623
Query: 522 PLLD--IQNGRHVLQEMTVD-TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF 577
+ ++ RH EM D +FI ND + D IITGPN GKS YI+ + +I
Sbjct: 624 GTGNTVLKEARHPCMEMQDDISFITNDVSLIRDESSFLIITGPNMGGKSTYIRMIGVIAL 683
Query: 578 LSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLL 629
++ IG FVP A + + D S S+FM ++ + +L+ ATS+SL ++
Sbjct: 684 MAQIGCFVPCTEAELTIFDCILARVGASDSQLKGVSTFMAEMLETSNILKSATSESLIII 743
Query: 630 DEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN-EGCLPKSER----LKF 684
DE G+GT T DG GL + VT ++ L TH EL PKS + + F
Sbjct: 744 DELGRGTSTYDGFGLAWAISEHIVT-EIRCFGLFATHFHELTTLADRYPKSVKNLHVVAF 802
Query: 685 YTMSVLRPENNSTDV----EDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLE 740
E + + + + LYR+ PG S+G+H A L P +V+ A E
Sbjct: 803 IGDGTTANEEDEKEKRKTRQKVTLLYRVEPGICDQSFGIHVAELVRFPEKVVNMARQKAE 862
Query: 741 AAQNNKHVERWSHENISAQDQQYKNAVEK 769
++ + + + D+ + VE+
Sbjct: 863 ELEDFTSADSAGNAASATIDKYSQEEVEE 891
Score = 48 (22.0 bits), Expect = 3.4e-30, Sum P(2) = 3.4e-30
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 14 VGVSYYDSSIRQLHVLEVWE-DSNSDFPLIDI 44
VGV + D+S+R+L V E + D S+F + I
Sbjct: 159 VGVCFADASVRELGVSEFLDNDVYSNFEALVI 190
>WB|WBGene00003418 [details] [associations]
symbol:msh-2 species:6239 "Caenorhabditis elegans"
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0032301
"MutSalpha complex" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0032302 "MutSbeta complex" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IMP] [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=IMP]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05190
Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0042771 GO:GO:0003684
GO:GO:0006302 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
HSSP:Q56215 GO:GO:0032301 GO:GO:0032138 KO:K08735 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 GeneTree:ENSGT00550000074867
OMA:HINERLD EMBL:FO080998 PIR:C87740 RefSeq:NP_491202.1
ProteinModelPortal:Q9TXR4 SMR:Q9TXR4 IntAct:Q9TXR4 MINT:MINT-227660
STRING:Q9TXR4 PaxDb:Q9TXR4 EnsemblMetazoa:H26D21.2.1
EnsemblMetazoa:H26D21.2.2 EnsemblMetazoa:H26D21.2.3 GeneID:171938
KEGG:cel:CELE_H26D21.2 UCSC:H26D21.2 CTD:171938 WormBase:H26D21.2
InParanoid:Q9TXR4 NextBio:873327 Uniprot:Q9TXR4
Length = 849
Score = 366 (133.9 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 159/630 (25%), Positives = 283/630 (44%)
Query: 141 ENERIVDTLEQKESGNA---SITID-SVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMG 196
+NE I + L+ S A SI+ S+ + + +D+ A EAL++FQ + + ++
Sbjct: 235 QNENIKECLQILHSNAADEYSISEKYSIFNYGTHGNMLIDSCAVEALELFQLNYN--YL- 291
Query: 197 IGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASL 256
+++ ++NKC T G +LLR+W RP+ ++++N RL+ + ++ + L
Sbjct: 292 --EKSNNLTLYNVLNKCKTLPGEKLLRDWLSRPLCQIDHINERLDIVEALFENQTIRQKL 349
Query: 257 HET-LKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVN-KIFEVGISESLREQL 314
++ L + D + ++ T D F ++ L V ++ ++ +E +
Sbjct: 350 RDSILARMPDCSQLARRLMRKC---TLQDLNRFYQAATLLETVEMQLIQLSEAEQFAPSI 406
Query: 315 -RLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIY 373
RLL +I E I ++ L D + KE VR F E+ E+ +
Sbjct: 407 NRLLKSEITE-----ILKKVERFQVLCDEFFDFDYEKENKE-IRVRVDFVPEIQEISEKL 460
Query: 374 EELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYL--MCIFEEKL----DDTTLEQ 427
E++ E++ + C + + Q G+ + + EEK D LE
Sbjct: 461 EQMERVAEKLRKKYSAKFE--CDNLKLD---KNSQYGFYFRVTLKEEKSIRKKDVHILET 515
Query: 428 LQG--FEFAFSDM-DGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLF 484
+G +F+ ++ D + L +H TR + ++ + K E I L+ +
Sbjct: 516 TKGSGVKFSVGELSDINDEFLEFHLKYTRAEEEVISMLCKKA---EEFIP--LIPAMA-- 568
Query: 485 SDHLLKAVNFAAELDCFLSLALVAHQNNYMRP-ILTL-EPLLDIQNGRH-VLQEMTVDTF 541
L+ ++ L F + + Y RP +L L L+++ RH V++ + F
Sbjct: 569 --QLIATLDVFVSLSTFAATS----SGIYTRPNLLPLGSKRLELKQCRHPVIEGNSEKPF 622
Query: 542 IPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD----- 596
IPND +D R+ I+TG N GKS Y++ AL + L+ IGSFVP +AT+ + D
Sbjct: 623 IPNDVVLDKC-RLIILTGANMGGKSTYLRSAALSILLAQIGSFVPCSSATISVVDGIFTR 681
Query: 597 ---SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFV 653
S + S+FM ++ +L++AT S ++DE G+GT T DG G+ I +
Sbjct: 682 VGASDKQSQGISTFMAEMLDCSAILQRATKNSFVVIDELGRGTSTFDGFGI-ASAIAQDI 740
Query: 654 TCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHA 713
+ + TH E+ G L + M V + ENN +I LY++ G A
Sbjct: 741 LNRIQCLSIFATHFHEM---GKLAEQPGAVALQMGV-QIENN-----EIHMLYKVFEGVA 791
Query: 714 LLSYGLHCALLAGVPAEVIKRAAYVLEAAQ 743
S+GL A + G+ VI +AA +LE +
Sbjct: 792 QCSFGLQVAKMVGIDENVINKAAQLLEGLE 821
>UNIPROTKB|Q9TXR4 [details] [associations]
symbol:msh-2 "Protein MSH-2" species:6239 "Caenorhabditis
elegans" [GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] [GO:0032302 "MutSbeta complex"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IBA] [GO:0010224 "response to UV-B" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0006311 "meiotic
gene conversion" evidence=IBA] [GO:0006302 "double-strand break
repair" evidence=IBA] [GO:0006301 "postreplication repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0042771 GO:GO:0003684 GO:GO:0006302
GO:GO:0010165 GO:GO:0010224 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0031573
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 HSSP:Q56215 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GeneTree:ENSGT00550000074867 OMA:HINERLD EMBL:FO080998 PIR:C87740
RefSeq:NP_491202.1 ProteinModelPortal:Q9TXR4 SMR:Q9TXR4
IntAct:Q9TXR4 MINT:MINT-227660 STRING:Q9TXR4 PaxDb:Q9TXR4
EnsemblMetazoa:H26D21.2.1 EnsemblMetazoa:H26D21.2.2
EnsemblMetazoa:H26D21.2.3 GeneID:171938 KEGG:cel:CELE_H26D21.2
UCSC:H26D21.2 CTD:171938 WormBase:H26D21.2 InParanoid:Q9TXR4
NextBio:873327 Uniprot:Q9TXR4
Length = 849
Score = 366 (133.9 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 159/630 (25%), Positives = 283/630 (44%)
Query: 141 ENERIVDTLEQKESGNA---SITID-SVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMG 196
+NE I + L+ S A SI+ S+ + + +D+ A EAL++FQ + + ++
Sbjct: 235 QNENIKECLQILHSNAADEYSISEKYSIFNYGTHGNMLIDSCAVEALELFQLNYN--YL- 291
Query: 197 IGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASL 256
+++ ++NKC T G +LLR+W RP+ ++++N RL+ + ++ + L
Sbjct: 292 --EKSNNLTLYNVLNKCKTLPGEKLLRDWLSRPLCQIDHINERLDIVEALFENQTIRQKL 349
Query: 257 HET-LKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVN-KIFEVGISESLREQL 314
++ L + D + ++ T D F ++ L V ++ ++ +E +
Sbjct: 350 RDSILARMPDCSQLARRLMRKC---TLQDLNRFYQAATLLETVEMQLIQLSEAEQFAPSI 406
Query: 315 -RLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIY 373
RLL +I E I ++ L D + KE VR F E+ E+ +
Sbjct: 407 NRLLKSEITE-----ILKKVERFQVLCDEFFDFDYEKENKE-IRVRVDFVPEIQEISEKL 460
Query: 374 EELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYL--MCIFEEKL----DDTTLEQ 427
E++ E++ + C + + Q G+ + + EEK D LE
Sbjct: 461 EQMERVAEKLRKKYSAKFE--CDNLKLD---KNSQYGFYFRVTLKEEKSIRKKDVHILET 515
Query: 428 LQG--FEFAFSDM-DGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLF 484
+G +F+ ++ D + L +H TR + ++ + K E I L+ +
Sbjct: 516 TKGSGVKFSVGELSDINDEFLEFHLKYTRAEEEVISMLCKKA---EEFIP--LIPAMA-- 568
Query: 485 SDHLLKAVNFAAELDCFLSLALVAHQNNYMRP-ILTL-EPLLDIQNGRH-VLQEMTVDTF 541
L+ ++ L F + + Y RP +L L L+++ RH V++ + F
Sbjct: 569 --QLIATLDVFVSLSTFAATS----SGIYTRPNLLPLGSKRLELKQCRHPVIEGNSEKPF 622
Query: 542 IPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD----- 596
IPND +D R+ I+TG N GKS Y++ AL + L+ IGSFVP +AT+ + D
Sbjct: 623 IPNDVVLDKC-RLIILTGANMGGKSTYLRSAALSILLAQIGSFVPCSSATISVVDGIFTR 681
Query: 597 ---SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFV 653
S + S+FM ++ +L++AT S ++DE G+GT T DG G+ I +
Sbjct: 682 VGASDKQSQGISTFMAEMLDCSAILQRATKNSFVVIDELGRGTSTFDGFGI-ASAIAQDI 740
Query: 654 TCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHA 713
+ + TH E+ G L + M V + ENN +I LY++ G A
Sbjct: 741 LNRIQCLSIFATHFHEM---GKLAEQPGAVALQMGV-QIENN-----EIHMLYKVFEGVA 791
Query: 714 LLSYGLHCALLAGVPAEVIKRAAYVLEAAQ 743
S+GL A + G+ VI +AA +LE +
Sbjct: 792 QCSFGLQVAKMVGIDENVINKAAQLLEGLE 821
>UNIPROTKB|G4NEZ2 [details] [associations]
symbol:MGG_00704 "DNA mismatch repair protein msh6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CM001235
GO:GO:0006298 GO:GO:0030983 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
InterPro:IPR017261 PIRSF:PIRSF037677 RefSeq:XP_003718302.1
ProteinModelPortal:G4NEZ2 EnsemblFungi:MGG_00704T0 GeneID:2675105
KEGG:mgr:MGG_00704 Uniprot:G4NEZ2
Length = 1218
Score = 293 (108.2 bits), Expect = 7.2e-30, Sum P(2) = 7.2e-30
Identities = 83/279 (29%), Positives = 138/279 (49%)
Query: 489 LKAVNFAAELDCFLSLALVAHQ--NNYMRPILT--LEPLLDIQNGRHVLQEMTVDTFIPN 544
++A+ ++LDC + LA + RP +++ + RH TVD FIPN
Sbjct: 903 IQAIRIISQLDCLICLAKASSSLGEPSCRPTFVDHERSVVEFEELRHPCMLNTVDDFIPN 962
Query: 545 DTRID-NDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD------- 596
D ++ +D IN++TG N +GKS ++ + V ++ IG +VPA +A + D
Sbjct: 963 DIKLGGDDANINLLTGANAAGKSTVLRMSCIAVIMAQIGCYVPAVSARLTPVDRIMSRLG 1022
Query: 597 -SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTC 655
+ ++ A QS+F ++L + +L +AT +SL +LDE G+GT + DG+ + +++ V
Sbjct: 1023 ANDNIFAAQSTFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHH-VAS 1081
Query: 656 DVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVED----IVFLYRLVPG 711
+ TH L E F +R + V+D + FLYRL G
Sbjct: 1082 HIGCVGFFATHYHSLATE----------FENHPEIRAKRMQIQVDDAKRRVTFLYRLEDG 1131
Query: 712 HALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVER 750
A S+G+HCA + G+ VI+RA AA+ +H R
Sbjct: 1132 VAEGSFGMHCAAMCGISDRVIERAEV---AAKEWEHTSR 1167
Score = 128 (50.1 bits), Expect = 7.2e-30, Sum P(2) = 7.2e-30
Identities = 21/89 (23%), Positives = 48/89 (53%)
Query: 202 EGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLK 261
EG ++F ++N+C+TP G+RL R W P+ +++ +N RL+A+ ++ +
Sbjct: 646 EG-TLFNLLNRCITPFGKRLFRQWVCHPLCNIKKINERLDAVDMLNADRSILEQFSSLMS 704
Query: 262 YVKDIPHILKKFNSPSFIYTASDWTAFLK 290
+ D+ ++ + ++ + A D+ L+
Sbjct: 705 KMPDLERLISRIHAG--VCKAEDFVRVLE 731
>UNIPROTKB|Q7R8N0 [details] [associations]
symbol:PY07191 "DNA mismatch repair protein msh2"
species:73239 "Plasmodium yoelii yoelii" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 EMBL:AABL01002579 RefSeq:XP_727998.1
ProteinModelPortal:Q7R8N0 STRING:Q7R8N0 GeneID:3800207
KEGG:pyo:PY07191 EuPathDB:PlasmoDB:PY07191 Uniprot:Q7R8N0
Length = 593
Score = 356 (130.4 bits), Expect = 1.4e-29, P = 1.4e-29
Identities = 151/593 (25%), Positives = 284/593 (47%)
Query: 236 LNSRLNAISFFLCSEELMASLH-ETLKYVKDIP---HILKKFNSPSFIYTASDWTA--FL 289
+N RLN + F+ +++ S+ LK + ++ H LK+ N + I S + L
Sbjct: 4 INQRLNIVETFIDEDDIRNSVFCNYLKRIPELDKLNHYLKEINKNNDIRVNSKYNEEMIL 63
Query: 290 KSICSL----LHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIID 345
K I L L +I+ + +S + + + LN +I+ K I + + +++ ID
Sbjct: 64 KDIVKLYYAILDFKQIYFLLVSINGKHK-ETLN-EILIKPLHDILNKFSKFLDMIEMTID 121
Query: 346 VNRSKE-KGYGTLVREGFCDELDELRQIYEELPEFLEEVAS------LELVQLPH---LC 395
+ +E K Y L+ + F EL+ QIY E ++++ + +L H
Sbjct: 122 LKEIEENKVY--LISKHFDSELE---QIYNEKSALMKKIKNHKEDVEKDLFSDKHDRRNK 176
Query: 396 KEMFVPC-IVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRE 454
K M ++ + G+L + ++ D L Q Q ++ M+ K F T T
Sbjct: 177 KAMREDIRLIECNTNGFLFRVCKK---DCPLVQQQKKKYLPIRMN---KNEFLFTTNT-- 228
Query: 455 LDNLLGDIYHKILDMERAITRDLVSH-ICLFSDH---LLKAVNFAAELDCFLSLALVAHQ 510
L NL + Y L + + ++V IC S + + K ++ + LD +S ++V +
Sbjct: 229 LKNLCRE-YEHCLSIYNTLQSEIVKKTICAVSTYTPVIEKFIDVVSTLDVLVSFSVVCYN 287
Query: 511 N--NYMRPILTL--EPLLDIQNGRHVLQEM--TVDTFIPNDTRID-NDGRINIITGPNYS 563
+ Y+RP L E ++ ++ RH L E+ + FIPND ++ N R+ I+TGPN
Sbjct: 288 SPFTYVRPALVKNGENVI-MKKSRHPLLELQHNISNFIPNDIHMNKNKSRLIIVTGPNMG 346
Query: 564 GKSIYIKQVALIVFLSHIGSFVPADAATVGL-TD-------SKHMTAEQSSFMIDLHQVG 615
GKS YI+Q+A+I L+ IG FVP D + + T S S+F+ ++ +
Sbjct: 347 GKSTYIRQIAIICILAQIGMFVPCDFCEIPIFTQIMCRVGASDFQLKGISTFLSEMIEAS 406
Query: 616 MMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGC 675
+++ A + SL ++DE G+GT T +G+G+ +I ++ ++ L TH E+ N
Sbjct: 407 AIIKNADNNSLIIVDELGRGTSTYEGLGI-SWSIGKYILDNIKCFCLFATHFHEMSNIAY 465
Query: 676 LPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRA 735
+ + + +++ +N I FLY + G + SYG++ A +A +P +VI++A
Sbjct: 466 QCEGV-INRHIETIIDQKNKK-----ICFLYEIKDGASNKSYGVNVAEIAKLPKDVIQKA 519
Query: 736 ---AYVLEAAQNNKHV-ERWSHENISAQDQQYKNAVEKMLAFDVLKGDLRLFF 784
LE+A+N ++ E+ + + S+ +++YKN + + +K ++ F
Sbjct: 520 YEKVEELESAENKYYLKEKLNIDTSSSTNEKYKNNISNYVK---IKDEINYIF 569
>MGI|MGI:1860077 [details] [associations]
symbol:Msh4 "mutS homolog 4 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0000794
"condensed nuclear chromosome" evidence=IDA] [GO:0000795
"synaptonemal complex" evidence=ISS;IDA] [GO:0001541 "ovarian
follicle development" evidence=IMP] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0007126 "meiosis" evidence=IDA;IMP] [GO:0007129 "synapsis"
evidence=IMP] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0007292 "female gamete generation" evidence=IMP] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0030983
"mismatched DNA binding" evidence=IBA] [GO:0045143 "homologous
chromosome segregation" evidence=IBA] [GO:0051026 "chiasma
assembly" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 MGI:MGI:1860077 GO:GO:0005524 GO:GO:0005654
GO:GO:0007283 GO:GO:0006298 Reactome:REACT_120463 GO:GO:0001541
GO:GO:0030983 GO:GO:0007292 GO:GO:0007131 Reactome:REACT_27235
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 GeneTree:ENSGT00550000074897 KO:K08740 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 CTD:4438
HOGENOM:HOG000290656 HOVERGEN:HBG036910 OrthoDB:EOG4DR9BS
EMBL:AF298655 EMBL:AF178957 IPI:IPI00118045 RefSeq:NP_114076.1
UniGene:Mm.272226 ProteinModelPortal:Q99MT2 SMR:Q99MT2
STRING:Q99MT2 PhosphoSite:Q99MT2 PRIDE:Q99MT2
Ensembl:ENSMUST00000005630 GeneID:55993 KEGG:mmu:55993
InParanoid:Q99MT2 ChiTaRS:MSH4 NextBio:311726 Bgee:Q99MT2
CleanEx:MM_MSH4 Genevestigator:Q99MT2 GermOnline:ENSMUSG00000005493
Uniprot:Q99MT2
Length = 958
Score = 360 (131.8 bits), Expect = 2.2e-29, P = 2.2e-29
Identities = 138/552 (25%), Positives = 247/552 (44%)
Query: 201 KEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETL 260
+ ++FG++N T G R LR+ L P++D+E ++ RL+ + L EEL L +
Sbjct: 352 RSNHTLFGVLNYTKTAGGSRRLRSNILEPLVDVETISMRLDCVQELLQDEELFFGLQSVI 411
Query: 261 KYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFE---VGISESLREQLRLL 317
D +L T + + + ++ L H ++ E V + LR
Sbjct: 412 SRFLDTEQLLSVLVQIPKQDTVNAAESKITNLIYLKHTLELVEPLKVTLKNCSTPLLRAY 471
Query: 318 NFDIVEKAASCITTELAYVYELVIGIID--VNRSKEKGYGTLVREGFCDELDELRQIYEE 375
+ + I ++ V + +N +K Y VR + LD R+ Y E
Sbjct: 472 YGSLEDHRFGLILDKIKTVINDDARYMKGCLNMRTQKCYA--VRSNISEFLDIARRTYTE 529
Query: 376 LPEFLEEVASLELVQLPHLCKEMFVPCIV-YIHQIGYLMCIFEEKLDDTTLEQLQGFEFA 434
+ ++++A + + L ++ +P + G+ + + + + +QL
Sbjct: 530 I---VDDIAGM----IAQLAEKYSLPLRTSFSSSRGFFIQMTTD-CAALSSDQLPSEFIK 581
Query: 435 FSDMDGETKRLFYHTPKTRE-LDNLLGDIYHKILDMERAITRDLVSHI-CLFSDHLLKAV 492
S + K E L +IYH + + ++ HI CL+ K
Sbjct: 582 ISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHCLY-----KLS 636
Query: 493 NFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRH-VLQEMTVDTFIPNDTRIDND 551
+ + LD LS A ++Y+RP T L I+ G H +L++++ + + N+T I
Sbjct: 637 DTVSMLDMLLSFAHACTLSDYVRPEFT--DTLAIKQGWHPILEKISAEKPVANNTYITEG 694
Query: 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGL---------TDSKHMTA 602
+ IITGPN SGKS Y+KQ+AL ++ IGS+VPA+ A+ + TD T
Sbjct: 695 SNVLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYASFRIAAQIFTRISTDDDIET- 753
Query: 603 EQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVL 662
S+FM ++ ++ +L A +SL L+DE G+GT TE+GIG+ + ++ + L
Sbjct: 754 NSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEEGIGISYAVCEHLLS--IKAFTL 811
Query: 663 VCTHLTELLNEGCLPKS-ERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHAL-LSYGLH 720
TH EL + L + E + F V +N S + + I++ Y+L G +YGL
Sbjct: 812 FTTHFLELCHLDALYLNVENMHFEVQHV---KNTSRNKDAILYTYKLSRGLTEEKNYGLK 868
Query: 721 CALLAGVPAEVI 732
A + +P+ ++
Sbjct: 869 AAEASSLPSSIV 880
>UNIPROTKB|I3LHG5 [details] [associations]
symbol:I3LHG5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007129 "synapsis" evidence=IEA] [GO:0000795 "synaptonemal
complex" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR007696
Pfam:PF05192 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
GO:GO:0007292 GO:GO:0007129 GO:GO:0000795 SUPFAM:SSF48334
GeneTree:ENSGT00550000074977 Ensembl:ENSSSCT00000031708 OMA:IFACSIS
Uniprot:I3LHG5
Length = 307
Score = 334 (122.6 bits), Expect = 3.0e-29, P = 3.0e-29
Identities = 97/299 (32%), Positives = 147/299 (49%)
Query: 2 QVYMACIL--HGHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTK 59
Q+++ C+L GH +G++YYD+ +H + D S L+ V + P + TS K
Sbjct: 18 QIHL-CVLWNSGH-LGIAYYDTGDSTIHFMPDAPDHES-LKLLQRVLDEINPLSVVTSAK 74
Query: 60 SEES---FLSALKRSDGTT-EAPTVKLVKSSIFSYEQAWHRLIYLRVTGMDDGLSIKERI 115
+E+ FL L D + P + + S F+ + + D ++ E+I
Sbjct: 75 QDENMTRFLGKLVSQDHRAPKRPEIVFLPSVDFALSHSKPLCSSSLFCFIPDSMTATEKI 134
Query: 116 CYLNSMMDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKL 175
+L+S++ + VRA GGLL L RI LE N S+ I + L + +
Sbjct: 135 LFLSSIIPFDCLLTVRALGGLLKFLGRRRIGVELEDY---NVSVPILGFKKFVLTHLVSI 191
Query: 176 DATAHEALQIFQTDKHPSHMGIGRA-KEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLE 234
D + LQIF+++ HPS + KEG S+FG ++ C G +LLR WF RP DL
Sbjct: 192 DQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGSLSPCKCKWGEKLLRLWFTRPTQDLG 251
Query: 235 NLNSRLNAISFFLCSEEL-MAS-LHETLKYVKDIPHILKKFNSPSFIYT-ASDWTAFLK 290
LNSRL+ I FFL + L MA LH L ++K++P ILK+ +T SDW K
Sbjct: 252 ELNSRLDVIQFFLLPQNLDMAQMLHRLLGHIKNVPLILKRMK---LSHTKVSDWQVLYK 307
>DICTYBASE|DDB_G0281683 [details] [associations]
symbol:msh3 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032302 "MutSbeta
complex" evidence=ISS;IBA] [GO:0032135 "DNA insertion or deletion
binding" evidence=ISS] [GO:0006312 "mitotic recombination"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0000735 "removal of nonhomologous ends" evidence=ISS]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0281683 GO:GO:0005524
GenomeReviews:CM000152_GR GO:GO:0003684 EMBL:AAFI02000042
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GO:GO:0000735 KO:K08736 RefSeq:XP_001134558.1
STRING:Q1ZXH0 EnsemblProtists:DDB0232960 GeneID:8623184
KEGG:ddi:DDB_G0281683 OMA:ATRISHI Uniprot:Q1ZXH0
Length = 1428
Score = 372 (136.0 bits), Expect = 5.4e-29, Sum P(2) = 5.4e-29
Identities = 130/457 (28%), Positives = 223/457 (48%)
Query: 345 DVNRSKEKGYGTLVREGFCDELD---ELRQIYEELPEFLEEVASLELV---QLPHLCKEM 398
++N+ K YGT+ G CD+ + +L + YE++ E E++ +E L ++ KE+
Sbjct: 961 NINKETAKEYGTV---G-CDKSNLWVDLEK-YEKIRETKEKIEQVEKEFKNVLKNIRKEL 1015
Query: 399 FVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNL 458
P + Y H G + E L+ + ++ ++ K YH P+ E +
Sbjct: 1016 SKPSLEYHHMPGLGL---EYLLE--LPPSFKAVPKSWIKVNSTQKMARYHAPEVLEQLKI 1070
Query: 459 LGDIYH--KILDMERAIT--RDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYM 514
L KI E I+ + LFS+ VN + LDC SLA V+ Y+
Sbjct: 1071 LSQSRETLKIQSQESWISFLGEFSVDYSLFSNF----VNKISNLDCLFSLAKVSSLEGYI 1126
Query: 515 RPILTLEPL---LDIQNGRHVLQEMTVD----TFIPNDTRIDNDG-RINIITGPNYSGKS 566
RP E + I+NGRH + E + +++PN + + IITGPN GKS
Sbjct: 1127 RPQFVKEKKDGGIQIENGRHPVVEAILSGSDGSYVPNTIELRESACKSMIITGPNMGGKS 1186
Query: 567 IYIKQVALIVFLSHIGSFVPADAATVGLTDSKH--MTAE------QSSFMIDLHQVGMML 618
++Q ALIV ++ +G FVPA + ++ + D+ + M A +S+F I+L + +L
Sbjct: 1187 SLLRQTALIVIMAQVGCFVPATSCSLSVFDAIYTRMGARDSIGTGKSTFFIELEETSDIL 1246
Query: 619 RQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPK 678
+ +T +L +LDE G+GT T DG+ + T+ Y V + L TH LL + L
Sbjct: 1247 KNSTQNTLVILDELGRGTSTNDGVAIAYSTLKYIVEV-MKCYCLFVTHYP-LLAQLELQY 1304
Query: 679 SERLKFYTMSVLRPENNS----TDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKR 734
++ + M L + + + + ++FLY+LV G A SYGL+ A LAG+P EVI
Sbjct: 1305 PTQVGNFHMGYLEEKQDQQLQKSVIPKVIFLYKLVKGAAQNSYGLNIARLAGLPMEVIAD 1364
Query: 735 AAYVLEAAQNNKHVERWSHENISAQDQQYKNAVEKML 771
A + ++ + + + R ++ + QQ +N ++ ++
Sbjct: 1365 A--LKKSNEMKESITRRANLSDGKDQQQIENEIKSII 1399
Score = 247 (92.0 bits), Expect = 7.4e-17, P = 7.4e-17
Identities = 112/432 (25%), Positives = 194/432 (44%)
Query: 201 KEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETL 260
KE S+ +MN+ T G R+ NW +P+ LE + R +A+ EEL+ +
Sbjct: 805 KEKGSLIWLMNRTSTFSGSRMFINWICKPLNQLELIKERQDAV------EELVNGIKTNS 858
Query: 261 KYVKDIPHILKKF-----NSPSFIYTASDWTA--FLKSICSLLHVNKIF-EVGISES-LR 311
+ I + K + S IY T FL ++ SL + ++F E+ + S +
Sbjct: 859 PPIVSIISLFKSHIPDLQRNLSRIYYKVQCTPKEFLNTMTSLQRIVELFKEINNNNSSYK 918
Query: 312 EQLRLLN--FDIVEKAASCITTELAYV-------YELVIGIIDVNRSKEKGYGTLVREGF 362
LLN F + + Y+ + + ++N+ K YGT+ G
Sbjct: 919 FNSTLLNSIFKLQNDNKDGDSDSFDYIGGEDKLSKRIKYFLSNINKETAKEYGTV---G- 974
Query: 363 CDELD---ELRQIYEELPEFLEEVASLELV---QLPHLCKEMFVPCIVYIHQIGYLMCIF 416
CD+ + +L + YE++ E E++ +E L ++ KE+ P + Y H G +
Sbjct: 975 CDKSNLWVDLEK-YEKIRETKEKIEQVEKEFKNVLKNIRKELSKPSLEYHHMPGLGL--- 1030
Query: 417 EEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRD 476
E L + + ++ ++ K YH P+ E +L + L ++
Sbjct: 1031 -EYLLELP-PSFKAVPKSWIKVNSTQKMARYHAPEVLEQLKILSQS-RETLKIQSQ--ES 1085
Query: 477 LVSHICLFS-DHLLKA--VNFAAELDCFLSLALVAHQNNYMRPILTLEPL---LDIQNGR 530
+S + FS D+ L + VN + LDC SLA V+ Y+RP E + I+NGR
Sbjct: 1086 WISFLGEFSVDYSLFSNFVNKISNLDCLFSLAKVSSLEGYIRPQFVKEKKDGGIQIENGR 1145
Query: 531 HVLQEMTVD----TFIPNDTRIDNDG-RINIITGPNYSGKSIYIKQVALIVFLSHIGSFV 585
H + E + +++PN + + IITGPN GKS ++Q ALIV ++ +G FV
Sbjct: 1146 HPVVEAILSGSDGSYVPNTIELRESACKSMIITGPNMGGKSSLLRQTALIVIMAQVGCFV 1205
Query: 586 PADAATVGLTDS 597
PA + ++ + D+
Sbjct: 1206 PATSCSLSVFDA 1217
Score = 39 (18.8 bits), Expect = 5.4e-29, Sum P(2) = 5.4e-29
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 143 ERIVDTLEQKESGNASITIDSVIEVSLNKFLKL 175
+RIV+ ++ + N+S +S + LN KL
Sbjct: 901 QRIVELFKEINNNNSSYKFNSTL---LNSIFKL 930
>RGD|1563954 [details] [associations]
symbol:Msh3 "mutS homolog 3 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003684 "damaged DNA
binding" evidence=ISO] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair" evidence=ISO]
[GO:0008150 "biological_process" evidence=ND] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=ISO]
[GO:0019237 "centromeric DNA binding" evidence=ISO] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0032302 "MutSbeta complex"
evidence=ISO] [GO:0043570 "maintenance of DNA repeat elements"
evidence=ISO] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISO] [GO:0051096 "positive regulation of
helicase activity" evidence=ISO] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=ISO] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO] [GO:0042803 "protein
homodimerization activity" evidence=ISO] [GO:0032357 "oxidized
purine DNA binding" evidence=ISO] [GO:0003697 "single-stranded DNA
binding" evidence=ISO] [GO:0030983 "mismatched DNA binding"
evidence=ISO] [GO:0032139 "dinucleotide insertion or deletion
binding" evidence=ISO] [GO:0032142 "single guanine insertion
binding" evidence=ISO] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=ISO] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 RGD:1563954 GO:GO:0005524
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 GO:GO:0000710
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HOGENOM:HOG000029776
GO:GO:0016447 IPI:IPI00196502 UniGene:Rn.162551 EMBL:BC091283
ProteinModelPortal:Q5BJY1 STRING:Q5BJY1 UCSC:RGD:1563954
HOVERGEN:HBG071048 InParanoid:Q5BJY1 ArrayExpress:Q5BJY1
Genevestigator:Q5BJY1 Uniprot:Q5BJY1
Length = 265
Score = 331 (121.6 bits), Expect = 6.4e-29, P = 6.4e-29
Identities = 83/209 (39%), Positives = 123/209 (58%)
Query: 546 TRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD---SKHMTA 602
T + + R+ IITGPN GKS YIKQVAL+V ++ IGS+VPA+ AT+G+ D ++ A
Sbjct: 1 TNLSDSERVMIITGPNMGGKSSYIKQVALVVIMAQIGSYVPAEEATIGIVDGIFTRRGAA 60
Query: 603 E-----QSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDV 657
+ +S+FM +L ++++AT +SL +LDE G+GT T DGI + T+ YF+ DV
Sbjct: 61 DNIYKGRSTFMEELTDTAEIIQKATQRSLVILDELGRGTSTHDGIAIAYATLEYFIR-DV 119
Query: 658 PPKVLVCTHLTELLN-EGCLPKSERLKFYTMSVLRPENNST----DVED----IVFLYRL 708
L TH + E P E++ Y M L E+ S D+E + FLY++
Sbjct: 120 KSLTLFVTHYPPVCELEKRYP--EQVGNYHMGFLVNEDGSKQDSGDMEQMPDSVTFLYQI 177
Query: 709 VPGHALLSYGLHCALLAGVPAEVIKRAAY 737
G A SYGL+ A LA VP E++++AA+
Sbjct: 178 TRGIAARSYGLNVAKLADVPREILQKAAH 206
>UNIPROTKB|Q7S0U7 [details] [associations]
symbol:NCU07407 "Putative uncharacterized protein"
species:367110 "Neurospora crassa OR74A" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0043504 "mitochondrial DNA repair" evidence=IBA] [GO:0000228
"nuclear chromosome" evidence=IRD] [GO:0000404 "loop DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0007131 "reciprocal meiotic recombination" evidence=IRD]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005739 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0008094 GO:GO:0043504 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150
GO:GO:0032300 GO:GO:0032139 OMA:RVGGFYE EMBL:AABX02000038
RefSeq:XP_958182.2 UniGene:Ncr.21352 EnsemblFungi:EFNCRT00000007377
GeneID:3874329 KEGG:ncr:NCU07407 Uniprot:Q7S0U7
Length = 1184
Score = 301 (111.0 bits), Expect = 6.8e-29, Sum P(2) = 6.8e-29
Identities = 104/330 (31%), Positives = 162/330 (49%)
Query: 442 TKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCF 501
T R F+H P L L + +I E A+ L S++ L + ELD
Sbjct: 851 TTRTFHH-PLWTSLGESLDHVRLRIRSEETALFSSLRSNVVTLLIKLRRNALVLDELDIA 909
Query: 502 LSLALVAHQNNYMRPILTLEPLLD----------IQNGRHVLQEMTV----DTFIPNDTR 547
SLA +A + N +RPIL + I GRH E ++ TF ND
Sbjct: 910 TSLARLATEQNLVRPILHDSSTTNGSQGMGTRTVIVGGRHPTVEPSLLSRGMTFQKNDCL 969
Query: 548 IDNDGR--INIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS-------- 597
I + G+ I +ITGPN +GKS +++Q ALI L+ +G +VPAD A +G+ D+
Sbjct: 970 IGSPGQGAIWLITGPNMAGKSTFLRQNALITILAQMGCYVPADYAELGIVDAIFSRVGSA 1029
Query: 598 KHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDV 657
++ A+QS+FM+++ + +LRQAT +S ++DE G+GT EDG + ++++ +T +
Sbjct: 1030 DNLYADQSTFMVEMMETAAILRQATPRSFVIMDEIGRGTTPEDGTAVAFASLHHLLTVN- 1088
Query: 658 PPKVLVCTH---LTELLNEGCLPKSERLKFYTMSVLRPENNSTDVED-----IVFLYRLV 709
+ L TH + ++L E L + S TDVE+ V++++L
Sbjct: 1089 KCRGLFATHFHAVGDMLKEQGLVVEDGASSAGAS-WGVAMYCTDVEEDESGGFVYVHKLR 1147
Query: 710 PGHALLSYGLHCALLAGVPAEVIKRAAYVL 739
G S+ L A LAG+P IK A VL
Sbjct: 1148 KGMNRQSHALKVARLAGLPEPAIKIAQQVL 1177
Score = 110 (43.8 bits), Expect = 6.8e-29, Sum P(2) = 6.8e-29
Identities = 38/143 (26%), Positives = 69/143 (48%)
Query: 138 AVLENERIVD-TLEQKESGNASITIDSVIEVSLNKFLKLDATA-HEALQIFQTDKHPSH- 194
A + E ++ T ++ ++GN + + V + +KL H+ +QI DK+
Sbjct: 437 AKIPTETVIRFTDDEIKAGN--VLLHYVTDRLQGLSMKLQPPIRHDNMQIMTIDKNSMRS 494
Query: 195 MGIGRA-KEGF---SVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSE 250
+ I + +EGF S+ + + VT G RLL W P L +NSRL+ I+ F+ +
Sbjct: 495 LEIKKTMREGFFAGSLLHAIRRTVTKSGARLLNEWLSAPSTSLSVINSRLDLITRFISNP 554
Query: 251 ELMASLHETLKYVKDIPHILKKF 273
+L ++ L D +++KF
Sbjct: 555 DLSDAITVLLHRSHDTQRLVQKF 577
>TAIR|locus:2132233 [details] [associations]
symbol:MSH6 "AT4G02070" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006200 "ATP catabolic process"
evidence=IBA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006290 "pyrimidine dimer repair" evidence=IMP] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0048451 "petal formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 InterPro:IPR002999
GO:GO:0005524 GO:GO:0009411 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003684 EMBL:AL161493 SMART:SM00333 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0045910 GO:GO:0008094
GO:GO:0006290 EMBL:AF001308 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
EMBL:AF001535 EMBL:AJ245967 IPI:IPI00528681 PIR:T01508
RefSeq:NP_192116.1 UniGene:At.34340 ProteinModelPortal:O04716
SMR:O04716 STRING:O04716 PaxDb:O04716 PRIDE:O04716
EnsemblPlants:AT4G02070.1 GeneID:828147 KEGG:ath:AT4G02070
TAIR:At4g02070 HOGENOM:HOG000243127 InParanoid:O04716 KO:K08737
OMA:YHMDAVI PhylomeDB:O04716 ProtClustDB:CLSN2685718
ArrayExpress:O04716 Genevestigator:O04716 GermOnline:AT4G02070
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 Uniprot:O04716
Length = 1324
Score = 280 (103.6 bits), Expect = 7.1e-29, Sum P(2) = 7.1e-29
Identities = 81/254 (31%), Positives = 126/254 (49%)
Query: 540 TFIPNDTRIDNDGRINII--TGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS 597
+F+PN+ +I + + I TGPN GKS ++QV L V L+ IG+ VPA+ V D
Sbjct: 1062 SFVPNNVKIGGAEKASFILLTGPNMGGKSTLLRQVCLAVILAQIGADVPAETFEVSPVDK 1121
Query: 598 --------KHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTI 649
H+ A QS+F+ +L + +ML AT SL +LDE G+GT T DG + +
Sbjct: 1122 ICVRMGAKDHIMAGQSTFLTELSETAVMLTSATRNSLVVLDELGRGTATSDGQAIAESVL 1181
Query: 650 NYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLV 709
+F+ V + TH L + + ++ M+ E VE++ FLYRL
Sbjct: 1182 EHFIE-KVQCRGFFSTHYHRLSVD--YQTNPKVSLCHMACQIGEGIG-GVEEVTFLYRLT 1237
Query: 710 PGHALLSYGLHCALLAGVPAEVIKRA---AYVLEAAQNNKHVERWSHENISAQDQQYKNA 766
PG SYG++ A LAG+P V++RA + EA H + H+ ++A +Q ++
Sbjct: 1238 PGACPKSYGVNVARLAGLPDYVLQRAVIKSQEFEALYGKNH-RKTDHK-LAAMIKQIISS 1295
Query: 767 VEKMLAFDVLKGDL 780
V + K L
Sbjct: 1296 VASDSDYSASKDSL 1309
Score = 148 (57.2 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 48/162 (29%), Positives = 80/162 (49%)
Query: 447 YHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLAL 506
Y TP ++L L + ++I++ L+ C + + V+ AELD +SLA
Sbjct: 959 YWTPTIKKLLKELSQAKSEKESALKSISQRLIGRFCEHQEKWRQLVSATAELDVLISLAF 1018
Query: 507 VA--HQNNYMRPIL---TLE--PLLDIQN-GRHVLQEMTVD--TFIPNDTRIDNDGRINI 556
+ ++ RP++ T + P L G VL+ ++ +F+PN+ +I + +
Sbjct: 1019 ASDSYEGVRCRPVISGSTSDGVPHLSATGLGHPVLRGDSLGRGSFVPNNVKIGGAEKASF 1078
Query: 557 I--TGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD 596
I TGPN GKS ++QV L V L+ IG+ VPA+ V D
Sbjct: 1079 ILLTGPNMGGKSTLLRQVCLAVILAQIGADVPAETFEVSPVD 1120
Score = 133 (51.9 bits), Expect = 7.1e-29, Sum P(2) = 7.1e-29
Identities = 42/174 (24%), Positives = 85/174 (48%)
Query: 105 MDDGLSIKERICYLNSMMDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSV 164
+ DG S ++ + D + + A GG + L + ++L + + S+
Sbjct: 629 LGDGSSFLPKMLSELATEDKNGSLALSALGGAIYYLRQAFLDESL-LRFAKFESLPYCDF 687
Query: 165 IEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRN 224
V+ + + LDA A E L+IF+ ++ + G +++ +N+C+T G+RLL+
Sbjct: 688 SNVNEKQHMVLDAAALENLEIFENSRNGGYSG--------TLYAQLNQCITASGKRLLKT 739
Query: 225 WFLRPILDLENLNSRLNAISFFLCSEELMASLH--ETLKYVKDIPHILKK-FNS 275
W RP+ + E + R +A++ L E L SL ++L + D+ ++ + F+S
Sbjct: 740 WLARPLYNTELIKERQDAVAI-LRGENLPYSLEFRKSLSRLPDMERLIARMFSS 792
Score = 42 (19.8 bits), Expect = 2.3e-19, Sum P(2) = 2.3e-19
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 253 MASLHETLKYVKDIPHILKKFNSPSFI-YTASDWTAFLKSICSLLHVNKIFEVGISESLR 311
+ ++ ++KY KD ++ NS I + +D + C+ V + FE + + L+
Sbjct: 856 LPNISSSIKYFKDAFDWVEAHNSGRVIPHEGADE----EYDCACKTVEE-FESSLKKHLK 910
Query: 312 EQLRLL 317
EQ +LL
Sbjct: 911 EQRKLL 916
Score = 39 (18.8 bits), Expect = 4.7e-19, Sum P(2) = 4.7e-19
Identities = 27/108 (25%), Positives = 48/108 (44%)
Query: 53 IIY--TSTKSEESFLSALKRSDGTTEAPTVKLVKSSIFSYEQAWHRLIYLRVTGMDDGLS 110
++Y T+ K + F+S L+ + EA + L +I ++ + RL++L G +
Sbjct: 804 VLYEDTAKKQVQEFISTLRGCETMAEACS-SL--RAILKHDTS-RRLLHLLTPGQSLP-N 858
Query: 111 IKERICYLNSMMDMGSEVQVRASGGLL----AVLENERIVDTLEQKES 154
I I Y D V+ SG ++ A E + T+E+ ES
Sbjct: 859 ISSSIKYFKDAFDW---VEAHNSGRVIPHEGADEEYDCACKTVEEFES 903
>UNIPROTKB|Q7RKG5 [details] [associations]
symbol:PY02936 "G/T mismatch binding protein-related"
species:73239 "Plasmodium yoelii yoelii" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 HSSP:Q56215 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
KO:K08737 InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677 EMBL:AABL01000828
RefSeq:XP_730891.1 ProteinModelPortal:Q7RKG5 STRING:Q7RKG5
GeneID:3830116 KEGG:pyo:PY02936 EuPathDB:PlasmoDB:PY02936
Uniprot:Q7RKG5
Length = 1261
Score = 277 (102.6 bits), Expect = 7.4e-29, Sum P(3) = 7.4e-29
Identities = 69/226 (30%), Positives = 122/226 (53%)
Query: 521 EPLLDIQNGRHVLQEMTVDTFIPNDTRI--DNDGRINII-TGPNYSGKSIYIKQVALIVF 577
+P L ++N H + + FIPN+ + D + ++ TGPN GKS ++Q A+ V
Sbjct: 973 KPFLILENNIHPVVATLMPNFIPNNIYMGCDKEKETTLLLTGPNMGGKSTLLRQTAISVI 1032
Query: 578 LSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLL 629
L+ IG+FVP+ + + D S ++ +S+F+++L + +L+Q+T SL +L
Sbjct: 1033 LAQIGAFVPSTYCELTIVDKIFTRLGSSDNLFEGKSTFLVELEDISNLLKQSTKYSLAIL 1092
Query: 630 DEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSV 689
DE G+GT + DG + T+ ++ + + + TH L+ E + + + Y MS+
Sbjct: 1093 DELGRGTSSFDGTAIALSTLEQ-ISDVIKCRCIFSTHYHLLVEE--VKHNTNISNYHMSL 1149
Query: 690 LRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRA 735
+ D E I+FLY+ + G S+G+H A LAG+P E+I+ A
Sbjct: 1150 ----SIDDDQEKIIFLYKFIKGICPKSFGIHIAKLAGLPKEIIELA 1191
Score = 143 (55.4 bits), Expect = 7.4e-29, Sum P(3) = 7.4e-29
Identities = 91/406 (22%), Positives = 166/406 (40%)
Query: 170 NKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRP 229
+ ++ LDATA + L+I +T G K S++ +NK T G R +R W P
Sbjct: 590 DNYMVLDATALKHLEILETQS-------GETKN--SLYDYVNKTCTNFGARNMRRWVCSP 640
Query: 230 ILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKF------NSPSFIYTAS 283
+L+ + +N RL+ + F ++ +++ + LK + DI +L K + ++ +
Sbjct: 641 LLNCDKINQRLDVVEFLRKNDHILSLIRLKLKKLPDIERLLNKICIQASQSERGAVFFDN 700
Query: 284 DWTAFLKSICSLLHV-----NKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYE 338
LK + L+ N + E+ +S + + F+I + Y
Sbjct: 701 IVNTKLKEFVTFLNAFKEIDNMLIEINSIDSEEDLIPTRLFEITNTYNKISKNNIKGNYP 760
Query: 339 LVIGIIDVNRSKEKGYGTLVRE----GFCDE-LDELRQIYEELPEFLEEVASLELVQLPH 393
+ I N EK Y +E CD+ +D + + +++ + L + LV +
Sbjct: 761 EIDKI--TNEFLEKIYFDGEKEYKPADGCDDAIDAINKKEKDIEKELNNI----LVDIKK 814
Query: 394 LCKEMFVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTR 453
+ K +P + Y+H Y I E D+ L+ E S G + + +
Sbjct: 815 ILK---IPNLKYVHA-KYKYEI--ECPDNVPKSFLKEVEIT-SVKKGFVR---IQNEEIK 864
Query: 454 ELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLK---AVNFAAELDCFLSLALVAHQ 510
L +L DI + D + + H LF +H K A +ELDC + A VA
Sbjct: 865 NLVEMLEDIEQEKKDAIYPFFQKIF-H--LFYEHYEKYISACRLISELDCLQAFAYVALN 921
Query: 511 NNYMRPILTLEPLLDIQNGRHVLQEMTVDTFIPNDTR--IDNDGRI 554
++ P LT P+L + + + D +D I+ DG++
Sbjct: 922 TSF--P-LT-RPILHFMECENTMDNKSDDPNYGDDLNCEIEKDGKM 963
Score = 60 (26.2 bits), Expect = 2.7e-20, Sum P(3) = 2.7e-20
Identities = 47/200 (23%), Positives = 89/200 (44%)
Query: 252 LMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLR 311
++ASL E KY ++IP L+ + + + A + F+ + SLL KI + E
Sbjct: 528 IIASLDEVNKYFENIPKALEAYKEQNSVICA--FGGFIVYLRSLLLDKKILKFCKIE-FY 584
Query: 312 EQLRLLNFDIVEKAASCITTELAYVY--ELVIGIID-VNRSKEKGYGTLVREGFCDELDE 368
+ + N+ +++ A + E+ E + D VN++ +R C L
Sbjct: 585 DLFKKDNYMVLD-ATALKHLEILETQSGETKNSLYDYVNKTCTNFGARNMRRWVCSPLLN 643
Query: 369 LRQIYEELP--EFL---EEVASL---ELVQLPHLCKEMFVPCIVYIH-QIGYLMCIFEEK 419
+I + L EFL + + SL +L +LP + + + CI + G +F +
Sbjct: 644 CDKINQRLDVVEFLRKNDHILSLIRLKLKKLPDIERLLNKICIQASQSERG---AVFFDN 700
Query: 420 LDDTTLEQLQGFEFAFSDMD 439
+ +T L++ F AF ++D
Sbjct: 701 IVNTKLKEFVTFLNAFKEID 720
Score = 43 (20.2 bits), Expect = 1.5e-18, Sum P(3) = 1.5e-18
Identities = 12/70 (17%), Positives = 28/70 (40%)
Query: 231 LDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLK 290
++L L ++L CS+ + + K + P + + P+ I + + + +
Sbjct: 481 IELRTLLAQLCPAEILYCSKNINKEVLSIFKNIPACPELTSVNSFPNIIASLDEVNKYFE 540
Query: 291 SICSLLHVNK 300
+I L K
Sbjct: 541 NIPKALEAYK 550
Score = 42 (19.8 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 222 LRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYT 281
LRN FL + L N RL +FL +Y++DI L + P++ +
Sbjct: 223 LRNKFLNLPITLNNDKFRLYIEQYFLYCNSFEFPKWIQPEYIRDIN--LNAPDHPNYD-S 279
Query: 282 ASDWT 286
++ WT
Sbjct: 280 STIWT 284
Score = 40 (19.1 bits), Expect = 7.4e-29, Sum P(3) = 7.4e-29
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 53 IIYTSTKSEESFLSALKRSDGTTEAPTVKLVKSSIFSYEQAWHRLIYLR 101
++Y K E L + DG+ +K V+ + L +LR
Sbjct: 176 LLYDENKKGEDILINSNKEDGSNNNRDIKYVQRKKIEDNKKSQELDHLR 224
Score = 38 (18.4 bits), Expect = 1.2e-28, Sum P(3) = 1.2e-28
Identities = 13/59 (22%), Positives = 22/59 (37%)
Query: 34 DSNSDFPLIDIVKYQAQPQIIYTSTKSEESFLSALKRSDGTTEAPTVKLVKSSIFSYEQ 92
D S L ++ +I+Y S + LS K E +V + I S ++
Sbjct: 476 DDESRIELRTLLAQLCPAEILYCSKNINKEVLSIFKNIPACPELTSVNSFPNIIASLDE 534
Score = 37 (18.1 bits), Expect = 6.2e-18, Sum P(3) = 6.2e-18
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 247 LCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFE 303
LC E+ L+ + K++ I K N P+ S +F I SL VNK FE
Sbjct: 490 LCPAEI---LYCSKNINKEVLSIFK--NIPACPELTSV-NSFPNIIASLDEVNKYFE 540
>UNIPROTKB|Q7SD11 [details] [associations]
symbol:msh-3 "DNA mismatch repair protein msh-3"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0008094
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 GO:GO:0000735 HOGENOM:HOG000029776 KO:K08736
OMA:KRTKSIY OrthoDB:EOG42NN7M EMBL:AABX02000089 RefSeq:XP_963874.1
ProteinModelPortal:Q7SD11 STRING:Q7SD11
EnsemblFungi:EFNCRT00000009637 GeneID:3880023 KEGG:ncr:NCU08115
Uniprot:Q7SD11
Length = 1145
Score = 230 (86.0 bits), Expect = 1.2e-28, Sum P(4) = 1.2e-28
Identities = 56/137 (40%), Positives = 80/137 (58%)
Query: 543 PNDTRIDNDGRI-NIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS--KH 599
PN T + +ITGPN GKS Y + VAL+V L+ IGSFVPA + ++ L+D+
Sbjct: 865 PNPTSPSGKPALAQLITGPNMGGKSSYTRAVALLVLLAQIGSFVPATSMSLTLSDAIFTR 924
Query: 600 MTAE------QSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFV 653
M A +S+FM+++ + +LRQAT +SL +LDE G+GT T DG + G + Y V
Sbjct: 925 MGARDNLFKGESTFMVEVSETAAILRQATPRSLVVLDELGRGTSTHDGRAIAGAVLEYVV 984
Query: 654 TCDVPPKVLVCTHLTEL 670
DV +L TH +L
Sbjct: 985 R-DVGCLMLFVTHYQDL 1000
Score = 97 (39.2 bits), Expect = 1.2e-28, Sum P(4) = 1.2e-28
Identities = 27/105 (25%), Positives = 53/105 (50%)
Query: 168 SLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFL 227
S + + ++ T E+L++++ S G S+ ++K T G+RLLR W
Sbjct: 495 STRQHMLINGTTLESLEVYRNATDHSEKG--------SLLWALDKTHTRFGQRLLRKWIG 546
Query: 228 RPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKK 272
RP+LD + L R++A+ L + + A + + + +K I L++
Sbjct: 547 RPLLDQQRLEERVSAVEELL-NNQSTAKVDKLVNMLKSIKADLER 590
Score = 90 (36.7 bits), Expect = 1.2e-28, Sum P(4) = 1.2e-28
Identities = 20/37 (54%), Positives = 26/37 (70%)
Query: 700 EDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAA 736
E+I FLY L PG A SYGL+ A LA +P +V++ AA
Sbjct: 1060 EEITFLYDLAPGVAHRSYGLNVARLARIPRKVLEVAA 1096
Score = 86 (35.3 bits), Expect = 1.2e-28, Sum P(4) = 1.2e-28
Identities = 39/142 (27%), Positives = 62/142 (43%)
Query: 409 IGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHK--- 465
+ Y+ E L + L+ +++ + G K +HTP L + HK
Sbjct: 710 VNYVTVAGIEYLIEVPNTDLKRVPASWAKISGTKKVSRFHTPTVLRL--IAERDQHKESL 767
Query: 466 ILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPIL--TLEP- 522
++A + DL+S I L AV+ + LDC LSL+ VA Y +P + P
Sbjct: 768 ASACDQAFS-DLLSQIAGEYQPLRDAVSSLSTLDCLLSLSTVAALPGYTKPTFLPSSHPS 826
Query: 523 LLDIQNGRHVLQE-MTVDTFIP 543
L I GRH + E + + +IP
Sbjct: 827 FLSITEGRHPIAEHLLPNGYIP 848
>UNIPROTKB|F1SQH6 [details] [associations]
symbol:LOC100739713 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074867 EMBL:CU928288 EMBL:FP102206
EMBL:FP476038 Ensembl:ENSSSCT00000009229 OMA:KGACDQS
ArrayExpress:F1SQH6 Uniprot:F1SQH6
Length = 584
Score = 344 (126.2 bits), Expect = 3.0e-28, P = 3.0e-28
Identities = 147/541 (27%), Positives = 247/541 (45%)
Query: 231 LDLENLNSRLNAISFFLCSEELMASLHETL-KYVKDIPHILKKFNSPSFIYTASDWTAFL 289
+D + RLN + F+ EL SL E L + D+ + KKF + D
Sbjct: 1 MDKNRIEERLNLVEAFVEDAELRQSLQEDLLRRFPDLNRLAKKFQRQAA--NLQDCYRLY 58
Query: 290 KSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRS 349
+ I L +V + E E + L L F V + ++ + E++ +D+++
Sbjct: 59 QGINQLPNVIQAMEK--YEGQHQALLLAVF--VTPLID-LRSDFSKFQEMIETTLDMDQV 113
Query: 350 KEKGYGTLVREGFCDELDELRQIYEELPEFLEEV---ASLELVQLPHLCKEMFVPCIVYI 406
+ + LV+ F L ELR+I ++L + ++ A+ +L P K++ +
Sbjct: 114 ENHEF--LVKPSFDPNLSELREIMDDLEKKMQSTLISAARDLGLDPG--KQIKLDSSA-- 167
Query: 407 HQIGYLMCIF--EEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYH 464
Q GY + EEK+ L + F S +D + + + K L+
Sbjct: 168 -QFGYYFRVTCKEEKV----LRNNKNF----STVDIQKNGVKFTNSKLTSLNEEYTKNKT 218
Query: 465 KILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNN--YMRPILTLEP 522
+ + + AI +++V+ + + + + A+LD +S A V++ Y+RP++ LE
Sbjct: 219 EYEEAQNAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPVI-LEK 277
Query: 523 ---LLDIQNGRHVLQEMTVDT-FIPNDTRIDNDGRI-NIITGPNYSGKSIYIKQVALIVF 577
+ ++ RH E+ + FIPND + D ++ +IITGPN GKS YI+Q ++V
Sbjct: 278 GQGRITLKASRHACVEVQDEVAFIPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVVVL 337
Query: 578 LSHIGSFVPADAATVGLTDS--KHMTAEQS------SFMIDLHQVGMMLRQATSQSLCLL 629
++ IG FVP ++A V + D + A S +FM ++ + +LR AT SL ++
Sbjct: 338 MAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIII 397
Query: 630 DEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTH---LTELLNEGCLPKSERLKFYT 686
DE G+GT T DG GL Y T + + TH LT L N+ +P L
Sbjct: 398 DELGRGTSTYDGFGLAWAISEYIAT-KIGAFCMFATHFHELTALANQ--IPTVNNLH--- 451
Query: 687 MSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVI---KRAAYVLEAAQ 743
++ L E E + LY++ G S+G+H A LA P VI K+ A LE Q
Sbjct: 452 VTALTTE------ETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIECAKQKALELEEFQ 505
Query: 744 N 744
N
Sbjct: 506 N 506
>UNIPROTKB|Q89VX1 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224911 "Bradyrhizobium japonicum USDA 110" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:BA000040 GenomeReviews:BA000040_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:NP_767564.1
ProteinModelPortal:Q89VX1 GeneID:1049823 KEGG:bja:bll0924
PATRIC:21185344 BioCyc:BJAP224911:GJEJ-933-MONOMER Uniprot:Q89VX1
Length = 912
Score = 336 (123.3 bits), Expect = 5.4e-28, Sum P(2) = 5.4e-28
Identities = 119/404 (29%), Positives = 190/404 (47%)
Query: 355 GTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQ--IGYL 412
G VR+G+ LDE R + + + VAS++ + V + H +GY
Sbjct: 456 GGFVRQGYEPALDEARNL-RDASRLV--VASMQA----RYADDTGVKGLKIRHNNVLGYF 508
Query: 413 MCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERA 472
+ + + D L + G+ + + T + E++ + + + L +E
Sbjct: 509 VEVTAQHGDKLMSAPLNATFIHRQTLAGQIR---FTTSELGEIEAKIANAGDRALGLELE 565
Query: 473 ITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHV 532
I L + SD L A A LD SLA +A NY+RP + I+ GRH
Sbjct: 566 IFERLCAKALEISDDLRAAAQGFALLDVATSLAKLAVDENYVRPEVDSSLGFAIEAGRHP 625
Query: 533 LQEMTV----DTFIPNDTRID-----NDGRINIITGPNYSGKSIYIKQVALIVFLSHIGS 583
+ E + + FI N + G++ ++TGPN +GKS +++Q ALI L+ IGS
Sbjct: 626 VVEQALKRNGEPFIANACDLSPAPAQKSGQLWLLTGPNMAGKSTFLRQNALIALLAQIGS 685
Query: 584 FVPADAATVGLTD---SKHMTAE-----QSSFMIDLHQVGMMLRQATSQSLCLLDEFGKG 635
FVPA A +G+ D S+ A+ +S+FM+++ + +L QA ++L +LDE G+G
Sbjct: 686 FVPATRARIGIIDRLFSRVGAADDLARGRSTFMVEMVETAAILNQAGERALVILDEIGRG 745
Query: 636 TLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENN 695
T T DG+ + I + + + L TH EL K R+ T+ V + N
Sbjct: 746 TATFDGLSIAWAAIEHLHESN-RCRTLFATHYHELT--ALSAKLPRMFNATVRVKEWQGN 802
Query: 696 STDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVL 739
+VFL+ ++PG A SYG+ A LAG+P VI RA VL
Sbjct: 803 ------VVFLHEVLPGSADRSYGIQVAKLAGLPPAVITRAKSVL 840
Score = 61 (26.5 bits), Expect = 5.4e-28, Sum P(2) = 5.4e-28
Identities = 16/70 (22%), Positives = 29/70 (41%)
Query: 205 SVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVK 264
S+ ++ VT G RLL P+ D + RL+A+ F+ + L+
Sbjct: 318 SLLDAIDCTVTSAGSRLLAQRLAAPLTDAPAIARRLDAVGAFVADSAAREDIRSILRGAP 377
Query: 265 DIPHILKKFN 274
D+ L + +
Sbjct: 378 DMSRALARLS 387
>RGD|1309190 [details] [associations]
symbol:Msh4 "mutS homolog 4 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000793 "condensed chromosome" evidence=ISO] [GO:0000794
"condensed nuclear chromosome" evidence=ISO] [GO:0000795
"synaptonemal complex" evidence=ISO;IBA] [GO:0001541 "ovarian
follicle development" evidence=IEA;ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0007126 "meiosis" evidence=ISO] [GO:0007129
"synapsis" evidence=ISO] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0007283 "spermatogenesis"
evidence=IEA;ISO] [GO:0007292 "female gamete generation"
evidence=IEA;ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008150 "biological_process" evidence=ND]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IRD] [GO:0045143 "homologous
chromosome segregation" evidence=IBA] [GO:0051026 "chiasma
assembly" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 RGD:1309190 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110 SUPFAM:SSF48334
SUPFAM:SSF53150 IPI:IPI00870836 Ensembl:ENSRNOT00000014106
Uniprot:F1M9U4
Length = 958
Score = 346 (126.9 bits), Expect = 7.5e-28, P = 7.5e-28
Identities = 144/558 (25%), Positives = 245/558 (43%)
Query: 201 KEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETL 260
+ ++FG++N T G R LR+ L P++D+E ++ RL+ + L EEL L +
Sbjct: 352 RSNHTLFGVLNYTKTAGGSRRLRSNILEPLVDVETISMRLDCVQELLQDEELFYGLQSVI 411
Query: 261 KYVKDIPHILK---KFNSPSFIYTA-SDWT--AFLKSICSLLHVNKIFEVGISESLRE-- 312
D +L + + A S T +LK L+ K+ S L
Sbjct: 412 SRFLDTEQLLSVLVQIPKQDTVNAAESKITNLIYLKHTLELVDPLKVALKNCSTPLLRAY 471
Query: 313 --QLRLLNFDIV-EKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDEL 369
L F ++ EK + I + Y+ G + N +K Y VR + LD
Sbjct: 472 YGSLEDHRFGLILEKIKTVINDDARYMK----GCL--NMRTQKCYA--VRSNISEFLDIA 523
Query: 370 RQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQI-GYLMCIFEEKLDDTTLEQL 428
R+ Y E+ ++++A + + L ++ +P G+ + + + + +QL
Sbjct: 524 RRTYTEI---VDDIAGM----ISQLAEKYSLPLRTSFSSARGFFIQMTTD-CAALSSDQL 575
Query: 429 QGFEFAFSDMDGETKRLFYHTPKTRE-LDNLLGDIYHKILDMERAITRDLVSHI-CLFSD 486
S + K E L +IYH + + ++ HI CL+
Sbjct: 576 PSEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHCLY-- 633
Query: 487 HLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRH-VLQEMTVDTFIPND 545
K + + LD LS A ++Y+RP T L I+ G H +L++++ + + N+
Sbjct: 634 ---KLSDTVSMLDMLLSFAHACTLSDYVRPEFT--DTLAIKQGWHPILEKISAEKPVANN 688
Query: 546 TRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGL---------TD 596
T I + IITGPN SGKS ++KQ+AL ++ IGSFVPA A+ + TD
Sbjct: 689 TYITEGSNVLIITGPNMSGKSTFLKQIALCQIMAQIGSFVPAQYASFRIAAQIFTRISTD 748
Query: 597 SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCD 656
T S+FM ++ ++ +L A +SL L+DE G+GT TE+G G+ + ++
Sbjct: 749 DDIET-NSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEEGTGISYAVCEHLLSTK 807
Query: 657 VPPKVLVCTHLTELLNEGCLPKS-ERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALL 715
L TH EL + L + E + F V +N S + + I++ Y+L G
Sbjct: 808 A--FTLFTTHFLELCHIDTLYLNVENMHFEVQHV---KNTSRNKDAILYTYKLSRGLTEE 862
Query: 716 S-YGLHCALLAGVPAEVI 732
YGL A + +P ++
Sbjct: 863 KHYGLKAAEASSLPPSIV 880
>UNIPROTKB|F1LXQ9 [details] [associations]
symbol:Msh3 "Protein Msh3" species:10116 "Rattus
norvegicus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 RGD:1563954 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 IPI:IPI00950406
Ensembl:ENSRNOT00000067613 ArrayExpress:F1LXQ9 Uniprot:F1LXQ9
Length = 266
Score = 320 (117.7 bits), Expect = 9.8e-28, P = 9.8e-28
Identities = 82/204 (40%), Positives = 119/204 (58%)
Query: 553 RINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS-----KHMTAE---- 603
R+ IITGPN GKS YIKQVAL+V ++ IGS+VPA+ AT+G+ D + A+
Sbjct: 7 RVMIITGPNMGGKSSYIKQVALVVIMAQIGSYVPAEEATIGIVDGIFTRQRRGAADNIYK 66
Query: 604 -QSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVL 662
+S+FM +L ++++AT +SL +LDE G+GT T DGI + T+ YF+ DV L
Sbjct: 67 GRSTFMEELTDTAEIIQKATQRSLVILDELGRGTSTHDGIAIAYATLEYFIR-DVKSLTL 125
Query: 663 VCTHLTELLN-EGCLPKSERLKFYTMSVLRPENNST----DVED----IVFLYRLVPGHA 713
TH + E P E++ Y M L E+ S D+E + FLY++ G A
Sbjct: 126 FVTHYPPVCELEKRYP--EQVGNYHMGFLVNEDGSKQDSGDMEQMPDSVTFLYQITRGIA 183
Query: 714 LLSYGLHCALLAGVPAEVIKRAAY 737
SYGL+ A LA VP E++++AA+
Sbjct: 184 ARSYGLNVAKLADVPREILQKAAH 207
>WB|WBGene00001872 [details] [associations]
symbol:him-14 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] [GO:0045143 "homologous
chromosome segregation" evidence=IMP] [GO:0051026 "chiasma
assembly" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 Pfam:PF00488 Pfam:PF05188 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0051729 GO:GO:0006298 GO:GO:0030983
EMBL:FO081697 GO:GO:0000239 GO:GO:0008094 GO:GO:0051026
GO:GO:0000712 GO:GO:0045143 GO:GO:0000795 EMBL:AF178755 PIR:E88197
RefSeq:NP_495451.1 UniGene:Cel.22695 ProteinModelPortal:Q23405
SMR:Q23405 STRING:Q23405 PaxDb:Q23405 EnsemblMetazoa:ZK1127.11
GeneID:174157 KEGG:cel:CELE_ZK1127.11 UCSC:ZK1127.11 CTD:174157
WormBase:ZK1127.11 eggNOG:COG0249 GeneTree:ENSGT00550000074897
HOGENOM:HOG000015880 InParanoid:Q23405 KO:K08740 OMA:GFFIQMT
NextBio:882779 GermOnline:ZK1127.11 Gene3D:3.30.420.110
SUPFAM:SSF48334 Uniprot:Q23405
Length = 842
Score = 346 (126.9 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 171/740 (23%), Positives = 317/740 (42%)
Query: 39 FPLIDIVKYQAQPQIIYTSTKS----EESFLSALKRSDGTTEAPTVKLVKSSIFS-YEQA 93
FP I + ++ + YT+ K+ E+F ++ +G E + KL+ ++ + + +A
Sbjct: 77 FPEIHLCEFVDSRE--YTTLKTMINVHEAFDIVIQ--NGNEERGSTKLLGEALMTAFPEA 132
Query: 94 WHRLIYLRVTGMDDGLSIKERICYLNSMMDMGSEVQVRASGGLLAVLENERIVDTLEQ-K 152
+ I + + G ER L S+M+ +EV + G L L + L+
Sbjct: 133 SLQSISSKYFNSERG----ER--QLQSLMN--AEVSTVSEGCLRRTLALGALAVLLKYIH 184
Query: 153 ESGNASITIDS--VIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMM 210
E+ + S + E+ +N +D + E+L+I D S + K+ ++ ++
Sbjct: 185 ETRCVFFRVKSLRIKEMGVNDTCMIDFVSWESLEIVDADD-ASKARKFQMKQKRTLMSVL 243
Query: 211 NKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHIL 270
N VT G RLLR+ L+P D+ + SR AI + +L L TL ++ ++
Sbjct: 244 NHTVTTNGYRLLRSSVLQPSTDVYLIQSRQEAIEELIGKPQLKDKLRRTLSRAHELDRVI 303
Query: 271 KKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCIT 330
S +T + A + I L+H K+ + GI +L ++ + ++EK
Sbjct: 304 AMCIQTSTSWTVRESEAKINQIIKLMHTLKVIQ-GI-RTLLHSAKMKSNILIEKTEFLKD 361
Query: 331 TELAYVYELVI-----GIIDVNRSKEKGYGT---LVREGFCDELDELRQIYEELPEFLEE 382
+ +++ ++D ++ T +R +LD RQ YEE+ +EE
Sbjct: 362 PRFDQIMNILVEKVDDSLLDGKKNSLHLQNTKCYAIRHFVAVQLDLARQTYEEIIRNVEE 421
Query: 383 VASLELVQLPHLCKEMFVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGET 442
+ E+ + H + + + G+ + + T+ + F D+
Sbjct: 422 TGAREIAEYFHGNSSVRLS---FSQSRGFHYTFVTRQAESVTIPRY------FLDVFRNR 472
Query: 443 KRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFL 502
+ +++ K ++ L + ++ I D++ + L A++ + +D
Sbjct: 473 TTVTFNSRKVIAYNDRLEQVVAEMFLASDVIVCDMIEEMQPMIPVLYYAMDALSSIDFLC 532
Query: 503 SLALVAHQNNYMRPILTLEPLLDIQNGRH-VLQEMTVDTFIPNDTRIDNDGRINIITGPN 561
LA + + +P T P I GRH +L + I NDT + D R IITGPN
Sbjct: 533 GLATYSDLRDTCKP--TFGPSFSISQGRHPILDWDDSEKTITNDTCLTRDRRFGIITGPN 590
Query: 562 YSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD---SK--H---MTAEQSSFMIDLHQ 613
+GKS Y+KQ A + ++ IG F+PA+ A++ + + S+ H + +S+F ++
Sbjct: 591 MAGKSTYLKQTAQLAIMAQIGCFIPANYASLPIFNRIFSRMGHNDELIRNKSAFASEMSD 650
Query: 614 VGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHL-TELLN 672
+++ A SL +LDE + T TE+GI I Y + C+ K+ T L T L+
Sbjct: 651 AAAIVQYADKNSLVVLDELARSTSTEEGIA-----ITYAI-CEKVLKLQSYTFLATHFLD 704
Query: 673 EGCLPK-SERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEV 731
L S + Y EN++ + + YR G YG L+ +P EV
Sbjct: 705 IAALANYSNAIDNYHFLPQTDENSTKKHKLLRGQYR---GPL---YGFELVELSTIPDEV 758
Query: 732 IKRA-AYVLEAAQNNKHVER 750
I+ A + E N + ER
Sbjct: 759 IEHAQSLATELRANVEDTER 778
Score = 46 (21.3 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 19/89 (21%), Positives = 40/89 (44%)
Query: 11 GHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSEESFLSALKR 70
GH +G++ +D+ ++H+ E + DS L ++ I+ + E L
Sbjct: 66 GH-IGIALHDTCFPEIHLCE-FVDSREYTTLKTMINVHEAFDIVIQNGNEERGSTKLLGE 123
Query: 71 SDGTT--EAPTVKLVKSSIFSYEQAWHRL 97
+ T EA +++ + S F+ E+ +L
Sbjct: 124 ALMTAFPEA-SLQSISSKYFNSERGERQL 151
>UNIPROTKB|Q23405 [details] [associations]
symbol:him-14 "MutS protein homolog him-14" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IMP] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IMP]
[GO:0000239 "pachytene" evidence=IMP] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 Pfam:PF00488 Pfam:PF05188
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009792 GO:GO:0051729 GO:GO:0006298
GO:GO:0030983 EMBL:FO081697 GO:GO:0000239 GO:GO:0008094
GO:GO:0051026 GO:GO:0000712 GO:GO:0045143 GO:GO:0000795
EMBL:AF178755 PIR:E88197 RefSeq:NP_495451.1 UniGene:Cel.22695
ProteinModelPortal:Q23405 SMR:Q23405 STRING:Q23405 PaxDb:Q23405
EnsemblMetazoa:ZK1127.11 GeneID:174157 KEGG:cel:CELE_ZK1127.11
UCSC:ZK1127.11 CTD:174157 WormBase:ZK1127.11 eggNOG:COG0249
GeneTree:ENSGT00550000074897 HOGENOM:HOG000015880 InParanoid:Q23405
KO:K08740 OMA:GFFIQMT NextBio:882779 GermOnline:ZK1127.11
Gene3D:3.30.420.110 SUPFAM:SSF48334 Uniprot:Q23405
Length = 842
Score = 346 (126.9 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 171/740 (23%), Positives = 317/740 (42%)
Query: 39 FPLIDIVKYQAQPQIIYTSTKS----EESFLSALKRSDGTTEAPTVKLVKSSIFS-YEQA 93
FP I + ++ + YT+ K+ E+F ++ +G E + KL+ ++ + + +A
Sbjct: 77 FPEIHLCEFVDSRE--YTTLKTMINVHEAFDIVIQ--NGNEERGSTKLLGEALMTAFPEA 132
Query: 94 WHRLIYLRVTGMDDGLSIKERICYLNSMMDMGSEVQVRASGGLLAVLENERIVDTLEQ-K 152
+ I + + G ER L S+M+ +EV + G L L + L+
Sbjct: 133 SLQSISSKYFNSERG----ER--QLQSLMN--AEVSTVSEGCLRRTLALGALAVLLKYIH 184
Query: 153 ESGNASITIDS--VIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMM 210
E+ + S + E+ +N +D + E+L+I D S + K+ ++ ++
Sbjct: 185 ETRCVFFRVKSLRIKEMGVNDTCMIDFVSWESLEIVDADD-ASKARKFQMKQKRTLMSVL 243
Query: 211 NKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHIL 270
N VT G RLLR+ L+P D+ + SR AI + +L L TL ++ ++
Sbjct: 244 NHTVTTNGYRLLRSSVLQPSTDVYLIQSRQEAIEELIGKPQLKDKLRRTLSRAHELDRVI 303
Query: 271 KKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCIT 330
S +T + A + I L+H K+ + GI +L ++ + ++EK
Sbjct: 304 AMCIQTSTSWTVRESEAKINQIIKLMHTLKVIQ-GI-RTLLHSAKMKSNILIEKTEFLKD 361
Query: 331 TELAYVYELVI-----GIIDVNRSKEKGYGT---LVREGFCDELDELRQIYEELPEFLEE 382
+ +++ ++D ++ T +R +LD RQ YEE+ +EE
Sbjct: 362 PRFDQIMNILVEKVDDSLLDGKKNSLHLQNTKCYAIRHFVAVQLDLARQTYEEIIRNVEE 421
Query: 383 VASLELVQLPHLCKEMFVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGET 442
+ E+ + H + + + G+ + + T+ + F D+
Sbjct: 422 TGAREIAEYFHGNSSVRLS---FSQSRGFHYTFVTRQAESVTIPRY------FLDVFRNR 472
Query: 443 KRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFL 502
+ +++ K ++ L + ++ I D++ + L A++ + +D
Sbjct: 473 TTVTFNSRKVIAYNDRLEQVVAEMFLASDVIVCDMIEEMQPMIPVLYYAMDALSSIDFLC 532
Query: 503 SLALVAHQNNYMRPILTLEPLLDIQNGRH-VLQEMTVDTFIPNDTRIDNDGRINIITGPN 561
LA + + +P T P I GRH +L + I NDT + D R IITGPN
Sbjct: 533 GLATYSDLRDTCKP--TFGPSFSISQGRHPILDWDDSEKTITNDTCLTRDRRFGIITGPN 590
Query: 562 YSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD---SK--H---MTAEQSSFMIDLHQ 613
+GKS Y+KQ A + ++ IG F+PA+ A++ + + S+ H + +S+F ++
Sbjct: 591 MAGKSTYLKQTAQLAIMAQIGCFIPANYASLPIFNRIFSRMGHNDELIRNKSAFASEMSD 650
Query: 614 VGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHL-TELLN 672
+++ A SL +LDE + T TE+GI I Y + C+ K+ T L T L+
Sbjct: 651 AAAIVQYADKNSLVVLDELARSTSTEEGIA-----ITYAI-CEKVLKLQSYTFLATHFLD 704
Query: 673 EGCLPK-SERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEV 731
L S + Y EN++ + + YR G YG L+ +P EV
Sbjct: 705 IAALANYSNAIDNYHFLPQTDENSTKKHKLLRGQYR---GPL---YGFELVELSTIPDEV 758
Query: 732 IKRA-AYVLEAAQNNKHVER 750
I+ A + E N + ER
Sbjct: 759 IEHAQSLATELRANVEDTER 778
Score = 46 (21.3 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 19/89 (21%), Positives = 40/89 (44%)
Query: 11 GHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSEESFLSALKR 70
GH +G++ +D+ ++H+ E + DS L ++ I+ + E L
Sbjct: 66 GH-IGIALHDTCFPEIHLCE-FVDSREYTTLKTMINVHEAFDIVIQNGNEERGSTKLLGE 123
Query: 71 SDGTT--EAPTVKLVKSSIFSYEQAWHRL 97
+ T EA +++ + S F+ E+ +L
Sbjct: 124 ALMTAFPEA-SLQSISSKYFNSERGERQL 151
>TAIR|locus:2130913 [details] [associations]
symbol:MSH4 "AT4G17380" species:3702 "Arabidopsis
thaliana" [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200
"ATP catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000794 "condensed nuclear chromosome" evidence=IDA]
[GO:0007129 "synapsis" evidence=RCA;IMP] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0006302 "double-strand break repair"
evidence=RCA] [GO:0006312 "mitotic recombination" evidence=RCA]
[GO:0007059 "chromosome segregation" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007067 "mitosis"
evidence=RCA] [GO:0007126 "meiosis" evidence=RCA] [GO:0010332
"response to gamma radiation" evidence=RCA] [GO:0010564 "regulation
of cell cycle process" evidence=RCA] [GO:0032204 "regulation of
telomere maintenance" evidence=RCA] [GO:0032504 "multicellular
organism reproduction" evidence=RCA] [GO:0042138 "meiotic DNA
double-strand break formation" evidence=RCA] [GO:0043247 "telomere
maintenance in response to DNA damage" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 SMART:SM00533 SMART:SM00534 GO:GO:0009506
GO:GO:0005524 EMBL:CP002687 GO:GO:0003684 EMBL:Z97343 GO:GO:0030983
GO:GO:0008094 GO:GO:0051026 EMBL:AL161546 GO:GO:0045143
GO:GO:0043073 GO:GO:0000795 GO:GO:0007128 KO:K08740 OMA:GFFIQMT
SUPFAM:SSF48334 GO:GO:0032300 EMBL:AY646927 IPI:IPI00525244
IPI:IPI00538174 PIR:B71443 RefSeq:NP_193469.2 UniGene:At.24376
UniGene:At.71316 ProteinModelPortal:F4JP48 SMR:F4JP48 IntAct:F4JP48
EnsemblPlants:AT4G17380.1 GeneID:827450 KEGG:ath:AT4G17380
TAIR:At4g17380 GO:GO:0010777 Uniprot:F4JP48
Length = 792
Score = 265 (98.3 bits), Expect = 4.3e-27, Sum P(2) = 4.3e-27
Identities = 80/281 (28%), Positives = 137/281 (48%)
Query: 489 LKAVNFAAELDCFLSLAL--VAHQ------NNYMRPILTLEPLLDIQNGRHVLQEMTVDT 540
+ A+ AE+ C L + + AH + Y RP LT L I GRH + E +
Sbjct: 475 ISALTLLAEVLCLLDMIVNSFAHTISTKPVDRYSRPELTDSGPLAIDAGRHPILESIHND 534
Query: 541 FIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS--- 597
F+ N + + ++ GPN SGKS Y++QV L+V L+ IG +VPA AT+ + D
Sbjct: 535 FVSNSIFMSEATNMLVVMGPNMSGKSTYLQQVCLVVILAQIGCYVPARFATIRVVDRIFT 594
Query: 598 -----KHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYF 652
++ + S+FM ++ + +++ T++SL ++DE G+ T + DG+ + Y
Sbjct: 595 RMGTMDNLESNSSTFMTEMRETAFIMQNVTNRSLIVMDELGRATSSSDGLAMAWSCCEYL 654
Query: 653 VTCDVPPKVLVCTHLTELLNEGCL-PKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPG 711
++ + + TH+ L + P + L FY +R +N D F ++L G
Sbjct: 655 LS--LKAYTVFATHMDSLAELATIYPNVKVLHFYVD--IR--DNRLD-----FKFQLRDG 703
Query: 712 HALLS-YGLHCALLAGVPAEVIKRAAYVLEAA--QNNKHVE 749
+ YGL A +AG+P+ VI A + + + NK +E
Sbjct: 704 TLHVPHYGLLLAEVAGLPSTVIDTARIITKRITDKENKRIE 744
Score = 125 (49.1 bits), Expect = 4.3e-27, Sum P(2) = 4.3e-27
Identities = 38/130 (29%), Positives = 66/130 (50%)
Query: 148 TLEQKESGNASITIDSVIEVSLN-KF--LKLDATAHEALQIFQTDKHPSHMGIGRAKEGF 204
T++ E+ I + + V+ N F + +DAT+ E L++ H + +G K
Sbjct: 137 TIKWIEAEKGVIVTNHSLTVTFNGSFDHMNIDATSVENLELIDPF-HNALLGTSNKKR-- 193
Query: 205 SVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETL-KYV 263
S+F M T G RLLR L+P+ D+E +N+RL+ + + +E+L L + L K+
Sbjct: 194 SLFQMFKTTKTAGGTRLLRANLLQPLKDIETINTRLDCLDELMSNEQLFFGLSQVLRKFP 253
Query: 264 KDIPHILKKF 273
K+ +L F
Sbjct: 254 KETDRVLCHF 263
>UNIPROTKB|Q23K54 [details] [associations]
symbol:TTHERM_00194810 "MutS domain III family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
EMBL:GG662673 ProtClustDB:CLSZ2445539 RefSeq:XP_001017234.1
UniGene:Tth.3690 ProteinModelPortal:Q23K54 EnsemblProtists:EAR96989
GeneID:7830572 KEGG:tet:TTHERM_00194810 Uniprot:Q23K54
Length = 1232
Score = 252 (93.8 bits), Expect = 2.3e-26, Sum P(3) = 2.3e-26
Identities = 71/253 (28%), Positives = 125/253 (49%)
Query: 522 PLLDIQNGRH-VLQEMTVDTFIPNDTRI----------DNDGRINIITGPNYSGKSIYIK 570
P +++ +GRH L M V+ FIPND + DN I ++TGPN GKS ++
Sbjct: 957 PFIELTSGRHPCLASMGVN-FIPNDIYLGDIKQTGQFEDNKNLI-LLTGPNMGGKSTTLR 1014
Query: 571 QVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQAT 622
++ L+ IG +VPA + + L D S + +S+F I++ + ++Q +
Sbjct: 1015 MACVMAILAQIGCYVPAKSLRMTLVDRIFTRIGASDKLMDGKSTFFIEMEETSNAVKQGS 1074
Query: 623 SQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERL 682
SL ++DE G+GT T DG+ + + Y V ++ + L TH LL+E ++
Sbjct: 1075 KHSLIIMDELGRGTSTFDGVAIAYSIVRYLVE-NLQSRCLFATHYHVLLDE--FRHYPQI 1131
Query: 683 KFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAA 742
+Y M+ E S ++FLYRL G S+G++ A + G+ +I+ A +
Sbjct: 1132 AYYHMACHVDEKRSK----VIFLYRLKAGECSSSFGINVAKVVGISDNLIEIAKQKAKEF 1187
Query: 743 QNNKHVERWSHEN 755
+ N +++ + N
Sbjct: 1188 EENLNIQHAYNTN 1200
Score = 105 (42.0 bits), Expect = 2.3e-26, Sum P(3) = 2.3e-26
Identities = 45/211 (21%), Positives = 88/211 (41%)
Query: 165 IEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGF---SVFGMMNKCVTPMGRRL 221
IE + + LD+ + + L+I + P K F S+ G +NK TP G R+
Sbjct: 542 IEKGVRSCMILDSQSLQHLEILDSSSGPVSTQKENYKLHFDDGSLLGYINKTKTPFGYRM 601
Query: 222 LRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYT 281
L+NW P++D+ + R +AI ++ + L+ ++ +P L+K + Y+
Sbjct: 602 LKNWICAPLMDINKIYDRYDAIEDL---QKFNSERDTFLRGIEKLPD-LEKMCGRIYKYS 657
Query: 282 ASDWTAFLKSICSLLHVN-KIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELV 340
+ + K F+ ++ L E +L+ + A + L + +
Sbjct: 658 IRQQNQNVVYFEDFSYSRLKEFK-DLTTKLAESEKLIKTHLTPFADQFKSKRLRKL--VT 714
Query: 341 IGIIDVNRSKEKGYGTLVREGFCDELDELRQ 371
ID +E ++ G+ DE DE+ +
Sbjct: 715 PNTIDHEDEEEYELPAMIYHGYSDEEDEVEE 745
Score = 80 (33.2 bits), Expect = 2.3e-26, Sum P(3) = 2.3e-26
Identities = 35/122 (28%), Positives = 60/122 (49%)
Query: 437 DMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHIC--LFSDHLL--KAV 492
+ D +K Y +T+EL L+ ++ + D+++ ++ I + + +
Sbjct: 861 NFDFTSKAGKYQRFQTKELRELIAEL-DEAEDVQKKELKEFCRFIFKEFYESYKTWDTLI 919
Query: 493 NFAAELDCFLSLALVAH--QNNYM-RPIL--TLE---PLLDIQNGRH-VLQEMTVDTFIP 543
N AELDC +SL+ V+ + M RP L E P +++ +GRH L M V+ FIP
Sbjct: 920 NILAELDCLISLSRVSFLLADGVMSRPELYPASEKYVPFIELTSGRHPCLASMGVN-FIP 978
Query: 544 ND 545
ND
Sbjct: 979 ND 980
Score = 39 (18.8 bits), Expect = 1.4e-19, Sum P(3) = 1.4e-19
Identities = 22/99 (22%), Positives = 50/99 (50%)
Query: 288 FLKSICSLLHV-----NKIFEV--GI-SESLREQLRLLNFDIVEKAASCITTELA-YVYE 338
+LKSI L V +I+++ G+ S + + L + +I++ ++ ++T+ Y
Sbjct: 521 YLKSILILDQVISVARYQIYDIEKGVRSCMILDSQSLQHLEILDSSSGPVSTQKENYKLH 580
Query: 339 LVIGII--DVNRSKEK-GYGTLVREGFCDELDELRQIYE 374
G + +N++K GY +++ C L ++ +IY+
Sbjct: 581 FDDGSLLGYINKTKTPFGY-RMLKNWICAPLMDINKIYD 618
>UNIPROTKB|O13396 [details] [associations]
symbol:msh-2 "DNA mismatch repair protein msh-2"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0030466 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 EMBL:AF030634 EMBL:AABX02000010
RefSeq:XP_959643.1 UniGene:Ncr.25288 ProteinModelPortal:O13396
STRING:O13396 EnsemblFungi:EFNCRT00000003090 GeneID:3875790
KEGG:ncr:NCU02230 OrthoDB:EOG4S7NZ5 GO:GO:0000735 Uniprot:O13396
Length = 937
Score = 325 (119.5 bits), Expect = 8.5e-26, Sum P(2) = 8.5e-26
Identities = 142/566 (25%), Positives = 249/566 (43%)
Query: 136 LLAVLENERIVDTLEQKE----SGNASITIDSV-IEVSLNKFLKLDATAHEALQIFQTD- 189
L +L++ER L Q + G+AS I + I + F + H+ Q + D
Sbjct: 235 LSRLLKDERAASLLPQTDLKLAMGSASALIKYLGILHDPSNFGQYQLYQHDLAQFMKLDA 294
Query: 190 ---KHPSHM-GIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISF 245
K + M G + S++G++N C TP+G RLL W +P+++ E + R +
Sbjct: 295 AALKALNLMPGARDGAKNMSLYGLLNHCKTPVGSRLLSQWLKQPLMNAEEIEKRQQLVEA 354
Query: 246 FLCSEELMASLHET-LKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEV 304
F EL S+ E L+ + D+ + K+F T D + + L E
Sbjct: 355 FANDTELRQSMQEEHLRSIPDLYRLSKRFQRGKA--TLEDVVRAYQVVIRLPGFIGTLEG 412
Query: 305 GISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCD 364
+ E+ R+ L ++ ++ L + E+V +D++ + +++ F D
Sbjct: 413 VMDEAYRDPLD----EVYTNKLRELSDSLVKLQEMVETTVDLDALDNHEF--IIKPEFDD 466
Query: 365 ELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQI-GYLMCIFEEKLDDT 423
L +R+ + L ++ + E + L +E + H++ G+ M +L T
Sbjct: 467 SLRIIRKKLDRLRTDMDNEFA-EAAE--DLGQEREKKIFLENHKVHGWCM-----RLTRT 518
Query: 424 TLEQLQGFEFAFSDMDGETKRLFYHTPKT-----RELDNLLGDIYHKILDMERAITRDLV 478
++ + + + K Y T KT RE D L + Y++ + ++ ++V
Sbjct: 519 EAGCIRN-NSRYLECSTQ-KNGVYFTTKTLQALRREFDQLSQN-YNRT---QSSLVNEVV 572
Query: 479 SHICLFSDHLLKAVNFAAELDCFLSLALVA-HQN-NYMRPILTLEPL--LDIQNGRHVLQ 534
+ L + A LD +S A + H +Y+RP + + RH
Sbjct: 573 GVAASYCPVLERLAAVLAHLDVIVSFAHCSVHAPISYVRPKIHPRGTGRTVLTEARHPCM 632
Query: 535 EMTVD-TFIPNDTRIDN-DGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATV 592
E+ D TFI ND + D IITGPN GKS YI+Q+ +I ++ IG FVP +A +
Sbjct: 633 EVQDDVTFITNDVTLTREDSSFLIITGPNMGGKSTYIRQIGVIALMAQIGCFVPCSSAEL 692
Query: 593 GLTDS--KHMTAEQS------SFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGL 644
+ DS + A S +FM ++ + +L+ AT++SL ++DE G+GT T DG GL
Sbjct: 693 TIFDSILARVGASDSQLKGVSTFMAEMLETANILKSATAESLIIIDELGRGTSTYDGFGL 752
Query: 645 LGGTINYFVTCDVPPKVLVCTHLTEL 670
I+ + ++ L TH EL
Sbjct: 753 -AWAISEHIVKEIGCFALFATHFHEL 777
Score = 155 (59.6 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 62/204 (30%), Positives = 97/204 (47%)
Query: 590 ATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTI 649
A VG +DS+ S+FM ++ + +L+ AT++SL ++DE G+GT T DG GL I
Sbjct: 700 ARVGASDSQLKGV--STFMAEMLETANILKSATAESLIIIDELGRGTSTYDGFGL-AWAI 756
Query: 650 NYFVTCDVPPKVLVCTHLTELLN-EGCLPKSERLKFYTMSVLRPENNSTDV---ED---- 701
+ + ++ L TH EL P + L + + + + TDV ED
Sbjct: 757 SEHIVKEIGCFALFATHFHELTALADQYPNVKNL--HVTAHISGTDTDTDVITDEDEKAK 814
Query: 702 ----IVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQN--NKHVERWSHEN 755
+ LY++ PG S+G+H A L P +V++ A + ++ +KH E EN
Sbjct: 815 KKREVTLLYKVEPGICDQSFGIHVAELVRFPDKVVRMAKRKADELEDFTSKHEE----EN 870
Query: 756 ISAQDQQY-KNAVEKMLAF--DVL 776
QY K VE+ A DVL
Sbjct: 871 GGGLGVQYSKQDVEEGSALLKDVL 894
Score = 52 (23.4 bits), Expect = 8.5e-26, Sum P(2) = 8.5e-26
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 14 VGVSYYDSSIRQLHVLEVWE-DSNSDFPLIDIVKYQAQPQIIYTSTKSEE 62
VGV + D+S+R+L V E + D S+F + +++ + + I T K E+
Sbjct: 151 VGVCFADASVRELGVSEFLDNDLYSNFEAL-LIQLGVK-ECIVTQDKGEK 198
>UNIPROTKB|B1N4L6 [details] [associations]
symbol:EHI_123830 "DNA mismatch repair protein Msh2,
putative" species:5759 "Entamoeba histolytica" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 EMBL:DS571433 RefSeq:XP_001914132.1
ProteinModelPortal:B1N4L6 STRING:B1N4L6 GeneID:6220147
KEGG:ehi:EHI_123830 EuPathDB:AmoebaDB:EHI_123830 InParanoid:B1N4L6
ProtClustDB:CLSZ2734733 Uniprot:B1N4L6
Length = 630
Score = 321 (118.1 bits), Expect = 1.5e-25, P = 1.5e-25
Identities = 127/527 (24%), Positives = 246/527 (46%)
Query: 284 DWTAFLKSI--CSLLHVNKIFE-VGISESLREQLRLLNFDIVEKAA----SCITTELAYV 336
D +K I L + K++E V IS++++E+L+ +N +EK IT E+
Sbjct: 91 DLEKLIKGINKSDLESIVKLYEAVRISKNIKEELKEMNNKSIEKEIIEPLEKITEEMEKF 150
Query: 337 YELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCK 396
E+V+ +ID+ ++ + +RE F + L ++R+ ++++ E E+ LE K
Sbjct: 151 EEMVVTLIDIEETQNHVFK--IREDFDEGLQKIRESHKKVEELFEKC--LEQAANDLNIK 206
Query: 397 EMFVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELD 456
+ + H ++ + K ++ +++ + + + GE K F K +
Sbjct: 207 TDKIKIVE--HNNNLILRV--SKSNEKEVKKNKKYTI-IQTLKGECKFTF----KEMQTL 257
Query: 457 NLLGDIYHKILDMERAITRDLVSHICL----FSDHLLKAVNFAAELDCFLSLALVAHQNN 512
N+ D K+ E I + + I + + + N +DC S A V+ NN
Sbjct: 258 NVKRD---KLKLKEEEINKKFIEEINKVVEGYKEKFQELENMIGYIDCIQSFATVSIDNN 314
Query: 513 --YMRPIL--TLEPLLDIQNGRH-VLQEMTVDTFIPNDTRIDN-DGRINIITGPNYSGKS 566
Y +P + + + ++ I RH +++ ++++FI ND ID + R IITGPN GKS
Sbjct: 315 QGYSKPTIYESEKGIIKIIKARHPLIENNSINSFIENDIDIDRKETRFQIITGPNMGGKS 374
Query: 567 IYIKQVALIVFLSHIGSFVPADAATVGLTDS--------KHMTAEQSSFMIDLHQVGMML 618
Y++ + L V ++ IG F+P A + + D ++ S+FM ++ ++
Sbjct: 375 TYLRMIGLCVIMAQIGMFIPCSEAHISICDKIMCRIGAGDNIVEGMSTFMSEMKDTSEII 434
Query: 619 RQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPK 678
+++T SL L+DE G+GT T DG G+ I+ ++ D+ + TH E+
Sbjct: 435 KKSTKNSLVLIDELGRGTSTYDGFGI-AWAISEYLAIDIGCYCVFATHFHEITG------ 487
Query: 679 SERLKFYTMSVLRPENNSTDVED--IVFLYRLVPGHALLSYGLHCALLAGVPAEVI---K 733
L+ V+ ++ D+ D +V Y++ G S ++ A A P EV+ K
Sbjct: 488 ---LEKRVTGVIN-KHVEADIIDKQLVLKYKINNGSTDQSLAIYVAEWADFPHEVVESAK 543
Query: 734 RAAYVLEAAQ--NNKHVERWSHENISAQDQQYKNAVEKMLAFDVLKG 778
R A L+ Q + + +E ++++ I D + + ++ + D+L G
Sbjct: 544 RKAKELDLDQPDSKRKIELFTNK-IPLLDDE----IPQITSEDILNG 585
Score = 161 (61.7 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 52/213 (24%), Positives = 108/213 (50%)
Query: 176 DATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLEN 235
+ T A+ I + H+ G KE ++F +N+ T +G ++++ W +P++D +
Sbjct: 3 EVTTDNAMIIEEDAIEGLHL-FGDKKE-MTLFKHLNRTHTKIGEKMIKEWIKQPLIDKDK 60
Query: 236 LNSRLNAISFFLCSEELMASL-HETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICS 294
+N RL + F + + + +E L + D+ ++K N SD L+SI
Sbjct: 61 INKRLELVEGFYDNSGIRLKIKNEELAIIPDLEKLIKGINK-------SD----LESIV- 108
Query: 295 LLHVNKIFE-VGISESLREQLRLLNFDIVEKAA----SCITTELAYVYELVIGIIDVNRS 349
K++E V IS++++E+L+ +N +EK IT E+ E+V+ +ID+ +
Sbjct: 109 -----KLYEAVRISKNIKEELKEMNNKSIEKEIIEPLEKITEEMEKFEEMVVTLIDIEET 163
Query: 350 KEKGYGTLVREGFCDELDELRQIYEELPEFLEE 382
+ + +RE F + L ++R+ ++++ E E+
Sbjct: 164 QNHVFK--IREDFDEGLQKIRESHKKVEELFEK 194
>UNIPROTKB|E1BYJ2 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AADN02036252 IPI:IPI00822608
Ensembl:ENSGALT00000039625 ArrayExpress:E1BYJ2 Uniprot:E1BYJ2
Length = 1341
Score = 261 (96.9 bits), Expect = 1.5e-25, Sum P(2) = 1.5e-25
Identities = 69/213 (32%), Positives = 106/213 (49%)
Query: 539 DTFIPNDTRI---DNDGRIN----IITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAAT 591
D FIPND I D DG ++TGPN GKS ++Q L+V ++ +G +VPA+
Sbjct: 1088 DDFIPNDIVIGSKDEDGGSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAEVCR 1147
Query: 592 VGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIG 643
+ D S + + +S+F ++L + +L+ AT SL L+DE G+GT T DG
Sbjct: 1148 LTPIDRVFTRLGASDRIMSGESTFFVELSETSSILQHATEHSLVLVDELGRGTATFDGTA 1207
Query: 644 LLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDV--ED 701
+ + ++ + L TH L+ + + RL V EN S D E
Sbjct: 1208 IASAVVRELAE-NIKCRTLFSTHYHSLVEDYSGSAAVRLGHMACMV---ENESEDPSQET 1263
Query: 702 IVFLYRLVPGHALLSYGLHCALLAGVPAEVIKR 734
I FLY+ + G SYG + A LA +P E+I++
Sbjct: 1264 ITFLYKFIEGACPKSYGFNAARLADIPEEIIQK 1296
Score = 121 (47.7 bits), Expect = 1.5e-25, Sum P(2) = 1.5e-25
Identities = 71/300 (23%), Positives = 123/300 (41%)
Query: 4 YMACILH-----GHRV-GVSYYDSSIRQLHVLEVWEDSN-SDFPLIDIVKYQAQPQIIYT 56
Y+ C+ G RV GV + D+S+ + +V + +D + S F + V + Q+++
Sbjct: 521 YLLCVKEKEDSSGQRVYGVCFVDTSVGKFYVGQFSDDRHCSRFRTL--VAHYTPVQVLFE 578
Query: 57 STKSEESFLSALKRSDGTTEAPTVKLVKSSIF-SYEQAWHRLI---YLRVT-GMDDGLSI 111
LK S L+ S F S + L+ Y + + G +
Sbjct: 579 KGNLTVDTQKILKGS--LISCIQEGLISGSQFWSASKTLKVLLEEEYFKENQNTESGCVL 636
Query: 112 KERICYLNSMMD-MG------SEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDS- 163
I L S D +G SE+ + A GG++ L+ I L + I +D+
Sbjct: 637 PSVIKSLTSESDSLGLTPGENSELALSALGGIVFYLKKCLIDQELLSLANFEKYIPVDAD 696
Query: 164 -VIEVSLNKF-------LKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVT 215
VS + F + LD L++ Q G EG ++ ++ C T
Sbjct: 697 NAKTVSSSNFFARTDRRMVLDGVTLMNLEVLQN-------GTNGTTEG-TLLERIDSCCT 748
Query: 216 PMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNS 275
P G+RLL+ W P+ + ++N RL+A+ L + + E LK + D+ +L K +S
Sbjct: 749 PFGKRLLKQWLCAPLCNPTSINDRLDAVEDLLAVPAKLTEITEHLKKLPDLERLLSKIHS 808
Score = 46 (21.3 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 227 LRPILDLENLNSRLNAISFFLCSE---ELMASLHETLKYVK 264
L+ + DLE L S++++I L S+ + A +E +KY K
Sbjct: 793 LKKLPDLERLLSKIHSIGSPLKSQNHPDSRAIFYEEIKYSK 833
>UNIPROTKB|E1BWV7 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0000400 "four-way
junction DNA binding" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0032143 "single thymine insertion binding" evidence=IEA]
[GO:0032301 "MutSalpha complex" evidence=IEA] [GO:0032357 "oxidized
purine DNA binding" evidence=IEA] [GO:0032405 "MutLalpha complex
binding" evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA] [GO:0051096
"positive regulation of helicase activity" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0000287
GO:GO:0043531 GO:GO:0003682 GO:GO:0016887 GO:GO:0006298
GO:GO:0000790 InterPro:IPR000313 PROSITE:PS50812 GO:GO:0045910
SMART:SM00293 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032357 GO:GO:0032142 GO:GO:0032143
GO:GO:0051096 OMA:YHMDAVI InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AADN02036252 IPI:IPI00571940
Ensembl:ENSGALT00000014567 ArrayExpress:E1BWV7 Uniprot:E1BWV7
Length = 1357
Score = 261 (96.9 bits), Expect = 1.6e-25, Sum P(2) = 1.6e-25
Identities = 69/213 (32%), Positives = 106/213 (49%)
Query: 539 DTFIPNDTRI---DNDGRIN----IITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAAT 591
D FIPND I D DG ++TGPN GKS ++Q L+V ++ +G +VPA+
Sbjct: 1104 DDFIPNDIVIGSKDEDGGSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAEVCR 1163
Query: 592 VGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIG 643
+ D S + + +S+F ++L + +L+ AT SL L+DE G+GT T DG
Sbjct: 1164 LTPIDRVFTRLGASDRIMSGESTFFVELSETSSILQHATEHSLVLVDELGRGTATFDGTA 1223
Query: 644 LLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDV--ED 701
+ + ++ + L TH L+ + + RL V EN S D E
Sbjct: 1224 IASAVVRELAE-NIKCRTLFSTHYHSLVEDYSGSAAVRLGHMACMV---ENESEDPSQET 1279
Query: 702 IVFLYRLVPGHALLSYGLHCALLAGVPAEVIKR 734
I FLY+ + G SYG + A LA +P E+I++
Sbjct: 1280 ITFLYKFIEGACPKSYGFNAARLADIPEEIIQK 1312
Score = 121 (47.7 bits), Expect = 1.6e-25, Sum P(2) = 1.6e-25
Identities = 71/300 (23%), Positives = 123/300 (41%)
Query: 4 YMACILH-----GHRV-GVSYYDSSIRQLHVLEVWEDSN-SDFPLIDIVKYQAQPQIIYT 56
Y+ C+ G RV GV + D+S+ + +V + +D + S F + V + Q+++
Sbjct: 537 YLLCVKEKEDSSGQRVYGVCFVDTSVGKFYVGQFSDDRHCSRFRTL--VAHYTPVQVLFE 594
Query: 57 STKSEESFLSALKRSDGTTEAPTVKLVKSSIF-SYEQAWHRLI---YLRVT-GMDDGLSI 111
LK S L+ S F S + L+ Y + + G +
Sbjct: 595 KGNLTVDTQKILKGS--LISCIQEGLISGSQFWSASKTLKVLLEEEYFKENQNTESGCVL 652
Query: 112 KERICYLNSMMD-MG------SEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDS- 163
I L S D +G SE+ + A GG++ L+ I L + I +D+
Sbjct: 653 PSVIKSLTSESDSLGLTPGENSELALSALGGIVFYLKKCLIDQELLSLANFEKYIPVDAD 712
Query: 164 -VIEVSLNKF-------LKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVT 215
VS + F + LD L++ Q G EG ++ ++ C T
Sbjct: 713 NAKTVSSSNFFARTDRRMVLDGVTLMNLEVLQN-------GTNGTTEG-TLLERIDSCCT 764
Query: 216 PMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNS 275
P G+RLL+ W P+ + ++N RL+A+ L + + E LK + D+ +L K +S
Sbjct: 765 PFGKRLLKQWLCAPLCNPTSINDRLDAVEDLLAVPAKLTEITEHLKKLPDLERLLSKIHS 824
Score = 46 (21.3 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 227 LRPILDLENLNSRLNAISFFLCSE---ELMASLHETLKYVK 264
L+ + DLE L S++++I L S+ + A +E +KY K
Sbjct: 809 LKKLPDLERLLSKIHSIGSPLKSQNHPDSRAIFYEEIKYSK 849
>TAIR|locus:1005716529 [details] [associations]
symbol:MSH7 "AT3G24495" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200 "ATP
catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000911 "cytokinesis by cell plate formation" evidence=RCA]
[GO:0006260 "DNA replication" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0007067 "mitosis" evidence=RCA] [GO:0007126
"meiosis" evidence=RCA] [GO:0007129 "synapsis" evidence=RCA]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010389
"regulation of G2/M transition of mitotic cell cycle" evidence=RCA]
[GO:0010564 "regulation of cell cycle process" evidence=RCA]
[GO:0016458 "gene silencing" evidence=RCA] [GO:0034968 "histone
lysine methylation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0051726 "regulation of cell cycle"
evidence=RCA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009411 GO:GO:0003684 EMBL:AB020746
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
InterPro:IPR015536 PANTHER:PTHR11361:SF31 EMBL:AJ007792
EMBL:AF193018 EMBL:AF009657 IPI:IPI00538811 RefSeq:NP_850630.1
UniGene:At.6244 ProteinModelPortal:Q9SMV7 SMR:Q9SMV7 STRING:Q9SMV7
PaxDb:Q9SMV7 PRIDE:Q9SMV7 EnsemblPlants:AT3G24495.1 GeneID:822040
KEGG:ath:AT3G24495 GeneFarm:5083 TAIR:At3g24495
HOGENOM:HOG000030287 InParanoid:Q9SMV7 OMA:ELDEWRM PhylomeDB:Q9SMV7
ProtClustDB:CLSN2680110 Genevestigator:Q9SMV7 GermOnline:AT3G24495
Uniprot:Q9SMV7
Length = 1109
Score = 248 (92.4 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
Identities = 66/204 (32%), Positives = 107/204 (52%)
Query: 556 IITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS---------KHMTAEQSS 606
++TGPN GKS ++ L V + +G +VP ++ + L D+ + MT E S+
Sbjct: 850 LLTGPNMGGKSTLLRATCLAVIFAQLGCYVPCESCEISLVDTIFTRLGASDRIMTGE-ST 908
Query: 607 FMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTH 666
F+++ + +L+ AT SL +LDE G+GT T DG + + V V ++L TH
Sbjct: 909 FLVECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYSVFRHLVE-KVQCRMLFATH 967
Query: 667 LTELLNE-GCLPK--SERLK--FYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHC 721
L E P+ S+ + F + S +P D +D+VFLYRL G SYGL
Sbjct: 968 YHPLTKEFASHPRVTSKHMACAFKSRSDYQPRG--CD-QDLVFLYRLTEGACPESYGLQV 1024
Query: 722 ALLAGVPAEVIKRAAYVLEAAQNN 745
AL+AG+P +V++ A+ +A + +
Sbjct: 1025 ALMAGIPNQVVETASGAAQAMKRS 1048
Score = 131 (51.2 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 205 SVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVK 264
+++ ++ CV+P G+RLLRNW P+ D+E++N RL+ + F + E M + L +
Sbjct: 577 TLYKYLDNCVSPTGKRLLRNWICHPLKDVESINKRLDVVEEFTANSESMQITGQYLHKLP 636
Query: 265 DIPHILKKFNS 275
D+ +L + S
Sbjct: 637 DLERLLGRIKS 647
Score = 41 (19.5 bits), Expect = 5.1e-16, Sum P(2) = 5.1e-16
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 437 DMDGETKRLFYHTPKTRELDNL--LGDIYHKILDMERAITR 475
D++ KRL T +++ G HK+ D+ER + R
Sbjct: 604 DVESINKRLDVVEEFTANSESMQITGQYLHKLPDLERLLGR 644
Score = 39 (18.8 bits), Expect = 8.3e-16, Sum P(2) = 8.3e-16
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 445 LFYHTPKTRELDNLLGDIYHKILDMERAIT 474
LF+ K EL L ++ HK LD + ++
Sbjct: 286 LFFKVGKFYELYELDAELGHKELDWKMTMS 315
>SGD|S000002504 [details] [associations]
symbol:MSH6 "Protein required for mismatch repair in mitosis
and meiosis, forms a" species:4932 "Saccharomyces cerevisiae"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0032301
"MutSalpha complex" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0036297 "interstrand cross-link
repair" evidence=IGI] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IEA;IDA;IMP] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0000228
"nuclear chromosome" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0000710 "meiotic
mismatch repair" evidence=IMP] [GO:0032137 "guanine/thymine mispair
binding" evidence=IDA] [GO:0032138 "single base insertion or
deletion binding" evidence=IMP;IDA] [GO:0000400 "four-way junction
DNA binding" evidence=IDA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 SGD:S000002504
GO:GO:0005524 KO:K06630 GO:GO:0009411 GO:GO:0003684 EMBL:BK006938
GO:GO:0030983 EMBL:Z47746 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 RefSeq:NP_010384.3 GeneID:851676 KEGG:sce:YDR099W
GO:GO:0008094 GO:GO:0036297 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0000710 GO:GO:0032301
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
OMA:YHMDAVI InterPro:IPR017261 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
PIR:S51246 RefSeq:NP_010382.3 ProteinModelPortal:Q03834 SMR:Q03834
DIP:DIP-2423N IntAct:Q03834 MINT:MINT-618151 STRING:Q03834
PaxDb:Q03834 PeptideAtlas:Q03834 EnsemblFungi:YDR097C GeneID:851671
KEGG:sce:YDR097C CYGD:YDR097c NextBio:969292 Genevestigator:Q03834
GermOnline:YDR097C Uniprot:Q03834
Length = 1242
Score = 226 (84.6 bits), Expect = 9.0e-25, Sum P(3) = 9.0e-25
Identities = 64/243 (26%), Positives = 120/243 (49%)
Query: 520 LEPLLDIQNGRHV---LQEMTVDTFIPNDTRIDNDG-RINIITGPNYSGKSIYIKQVALI 575
L L ++ RH L T FIPND + + R+ ++TG N +GKS ++ +
Sbjct: 939 LNGFLKFKSLRHPCFNLGATTAKDFIPNDIELGKEQPRLGLLTGANAAGKSTILRMACIA 998
Query: 576 VFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLC 627
V ++ +G +VP ++A + D + ++ +S+F ++L + +L AT++SL
Sbjct: 999 VIMAQMGCYVPCESAVLTPIDRIMTRLGANDNIMQGKSTFFVELAETKKILDMATNRSLL 1058
Query: 628 LLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTM 687
++DE G+G + DG + +++ T + TH L + +++ M
Sbjct: 1059 VVDELGRGGSSSDGFAIAESVLHHVAT-HIQSLGFFATHYGTLASS--FKHHPQVRPLKM 1115
Query: 688 SVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKH 747
S+L E +T ++ FLY+++ G + S+G+H A + G+ E+I A AA N +H
Sbjct: 1116 SILVDE--AT--RNVTFLYKMLEGQSEGSFGMHVASMCGISKEIIDNAQI---AADNLEH 1168
Query: 748 VER 750
R
Sbjct: 1169 TSR 1171
Score = 131 (51.2 bits), Expect = 9.0e-25, Sum P(3) = 9.0e-25
Identities = 41/158 (25%), Positives = 71/158 (44%)
Query: 118 LNSMMDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDA 177
L S D G +V A GGLL L+ ++ L ++ I V + LD
Sbjct: 565 LKSYYDTGKKVGFSAFGGLLYYLKWLKLDKNLISMKN------IKEYDFVKSQHSMVLDG 618
Query: 178 TAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLN 237
+ L+IF S G ++F + N+ +TPMG+R+++ W + P+L ++
Sbjct: 619 ITLQNLEIFSNSFDGSDKG--------TLFKLFNRAITPMGKRMMKKWLMHPLLRKNDIE 670
Query: 238 SRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNS 275
SRL+++ L L L T + D+ +L + +S
Sbjct: 671 SRLDSVDSLLQDITLREQLEITFSKLPDLERMLARIHS 708
Score = 110 (43.8 bits), Expect = 1.3e-22, Sum P(3) = 1.3e-22
Identities = 45/182 (24%), Positives = 85/182 (46%)
Query: 205 SVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVK 264
++F + N+ +TPMG+R+++ W + P+L ++ SRL+++ L L L T +
Sbjct: 638 TLFKLFNRAITPMGKRMMKKWLMHPLLRKNDIESRLDSVDSLLQDITLREQLEITFSKLP 697
Query: 265 DIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEK 324
D+ +L + +S + D F K I + FE I L++ L+ N D+
Sbjct: 698 DLERMLARIHSRTI--KVKD---FEKVITA-------FETIIE--LQDSLK--NNDLKGD 741
Query: 325 AASCITTELAYVYELVIGIIDV-NRSKEKGYGTLV-REGFCDE----LDELRQIYEELPE 378
+ I++ + E V + R K +V + GF E +D ++++ +EL E
Sbjct: 742 VSKYISSFPEGLVEAVKSWTNAFERQKAINENIIVPQRGFDIEFDKSMDRIQELEDELME 801
Query: 379 FL 380
L
Sbjct: 802 IL 803
Score = 66 (28.3 bits), Expect = 9.0e-25, Sum P(3) = 9.0e-25
Identities = 22/80 (27%), Positives = 39/80 (48%)
Query: 20 DSSIRQLHVLEVWEDSNSDFPLID-IVKYQAQPQIIYTSTKSEESFLSALKRSDGTTEAP 78
D+ + Q+ +EV + N+ L + IVK+ + P I+ K+ E F K T A
Sbjct: 494 DTLMSQVRPMEVVMERNNLSTLANKIVKFNSAPNAIFNEVKAGEEFYDCDK-----TYA- 547
Query: 79 TVKLVKSSIFSYEQAWHRLI 98
+++ S FS E+ W ++
Sbjct: 548 --EIISSEYFSTEEDWPEVL 565
Score = 49 (22.3 bits), Expect = 5.1e-23, Sum P(3) = 5.1e-23
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 30 EVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSEESFLSALKRSD 72
E+ EDS D LI + + ++ + Y ++ S F + R +
Sbjct: 196 ELAEDSGDDDDLISLAETTSKKKFSYNTSHSSSPFTRNISRDN 238
Score = 39 (18.8 bits), Expect = 2.5e-15, Sum P(3) = 2.5e-15
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 420 LDDTTLEQLQGFEFAFSDMD-GETKRLF 446
LD TL+ L+ F +F D G +LF
Sbjct: 616 LDGITLQNLEIFSNSFDGSDKGTLFKLF 643
Score = 39 (18.8 bits), Expect = 3.1e-13, Sum P(4) = 3.1e-13
Identities = 13/62 (20%), Positives = 25/62 (40%)
Query: 230 ILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFL 289
+++ NL++ N I F + + + + + D + S + T DW L
Sbjct: 506 VMERNNLSTLANKIVKFNSAPNAIFNEVKAGEEFYDCDKTYAEIISSEYFSTEEDWPEVL 565
Query: 290 KS 291
KS
Sbjct: 566 KS 567
>UNIPROTKB|J9P5H1 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 SMART:SM00533 SMART:SM00534
Pfam:PF00855 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AAEX03007503
Ensembl:ENSCAFT00000043509 Uniprot:J9P5H1
Length = 1279
Score = 254 (94.5 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 74/246 (30%), Positives = 119/246 (48%)
Query: 515 RPILTLE-----PLLDIQNGRH--VLQEMTVDTFIPNDTRI------DNDGRIN--IITG 559
RP++ L P LD++ RH + + D FIPND I + +G+ ++TG
Sbjct: 994 RPVILLPEEGTPPFLDLRGSRHPCITKTFFGDDFIPNDILIGCEEEEEENGKAYCVLVTG 1053
Query: 560 PNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDL 611
PN GKS ++Q L+ ++ +G +VPA+ + D S + + +S+F ++L
Sbjct: 1054 PNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVEL 1113
Query: 612 HQVGMMLRQATSQSLCLLDEF-GKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTEL 670
+ +L AT+ SL L+DE G+GT T DG + + ++ + L TH L
Sbjct: 1114 SETASILTHATAHSLVLVDELVGRGTATFDGTAIANAVVKELAE-NIKCRTLFSTHYHSL 1172
Query: 671 LNEGCLPKSERLKFYTMSVLRPENNSTDV--EDIVFLYRLVPGHALLSYGLHCALLAGVP 728
+ + + RL V EN D E I FLY+ + G SYG + A LA +P
Sbjct: 1173 VEDYSQNVAVRLGHMACMV---ENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLP 1229
Query: 729 AEVIKR 734
EVI++
Sbjct: 1230 EEVIQK 1235
Score = 119 (46.9 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 32/123 (26%), Positives = 58/123 (47%)
Query: 153 ESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNK 212
+S S T + N+ + LDA L+IF G + EG ++ ++
Sbjct: 631 DSDVVSATRPGAVFAKANQRMVLDAVTLSNLEIFMN-------GTNGSTEG-TLLEKIDT 682
Query: 213 CVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKK 272
C TP G+RLL+ W P+ +N RL+AI + + ++ + + LK + D+ +L K
Sbjct: 683 CHTPFGKRLLKQWLCAPLCSPYAINDRLDAIEDLMVVPDKISDVADLLKKLPDLERLLSK 742
Query: 273 FNS 275
++
Sbjct: 743 IHN 745
>UNIPROTKB|Q74ZT2 [details] [associations]
symbol:AGOS_AGR116W "AGR116Wp" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:AE016820 GenomeReviews:AE016820_GR GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261 PIRSF:PIRSF037677
HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5 RefSeq:NP_986782.2
STRING:Q74ZT2 EnsemblFungi:AAS54606 GeneID:4623084
KEGG:ago:AGOS_AGR116W Uniprot:Q74ZT2
Length = 1167
Score = 231 (86.4 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
Identities = 67/255 (26%), Positives = 125/255 (49%)
Query: 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD--- 596
FIPND + +I ++TG N +GKS ++ + V ++ +G +VP + A + D
Sbjct: 891 FIPNDVHLGKSTAQIALLTGANAAGKSTILRMTCIAVIMAQLGCYVPCEDAELSPMDRIM 950
Query: 597 -----SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINY 651
+ ++ +S+F ++L + +L AT+++L +LDE G+G + DG + G +++
Sbjct: 951 TRLGANDNIMQGKSTFFVELSETRKILDMATNRTLIVLDELGRGGSSSDGFAIAEGVLHH 1010
Query: 652 FVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPG 711
T V TH L +K M++L E + + + FLY+L+ G
Sbjct: 1011 IST-HVQSLGFFATHYGTLGQS--FTHHPMVKPLQMAILVDEGS----KKVTFLYKLIEG 1063
Query: 712 HALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERWSHENISAQDQQYKNAVEKML 771
+ S+G+H A + G+P V++ A AA++ +H R I + ++Y N E ++
Sbjct: 1064 QSEGSFGMHVAAMCGIPRSVVENAE---RAAESFEHTSR-----ILKERKRYIND-EHVV 1114
Query: 772 AFDVLKGDLRLFFQD 786
+ +RL F D
Sbjct: 1115 PLGLQSDFVRLVFGD 1129
Score = 132 (51.5 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
Identities = 61/266 (22%), Positives = 112/266 (42%)
Query: 118 LNSMMDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDA 177
L D G +V A GGLL+ L+ ++ +L G ++ + L LD
Sbjct: 493 LKQYYDQGKKVGFSAFGGLLSYLQWLKLDKSL--LSMG----MVEEYNPLKAQTSLVLDG 546
Query: 178 TAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLN 237
+ L+IF + G ++F ++N+ +TPMG+R +R W + P+L E++
Sbjct: 547 ITLQNLEIFANSFDGTDKG--------TLFKLVNRAITPMGKRQMRTWVMHPLLRKEHIE 598
Query: 238 SRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLH 297
RL+++ L + L +L + D+ +L + +S + D F K IC +
Sbjct: 599 ERLDSVDQLLNEMPIRDLLESSLTGLPDLERLLARVHSGNL--PIKD---FDKVICGFEN 653
Query: 298 VNKIFEVGISE-SLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGT 356
+ ++ ++E L L DI S + + +Y+ + + + G
Sbjct: 654 IVRLIS-SLNEYELSGSLSRFLHDIPSTLKSDVESWTT-LYDRNMAVSEGKVVPNAG--- 708
Query: 357 LVREGFCDELDELRQIYEELPEFLEE 382
V F L ++R + EEL L E
Sbjct: 709 -VEPDFDVSLSKMRALEEELDAVLSE 733
Score = 121 (47.7 bits), Expect = 8.0e-13, Sum P(3) = 8.0e-13
Identities = 47/174 (27%), Positives = 77/174 (44%)
Query: 442 TKRLFYHTPKTRELDNLLGDI--YHKILDMERAITRDLVSHICL-FSDHLLKAVNFAAEL 498
TKR Y++PK ++L + + HKIL E + L FS + + +
Sbjct: 778 TKR--YYSPKVQKLARSMAEARELHKIL--EEGLKGRLYQKFDQNFSTTWFPTIKAISNI 833
Query: 499 DCFLSLALVAHQNNY--MRPILT--LEPLLDIQ-NG-------RHVLQEMTVD---TFIP 543
DC LSLA + + RP ++P + NG RH V+ FIP
Sbjct: 834 DCILSLARTSESLGFPACRPNFKDEIDPTTGHKLNGYLSFKELRHPCYNAGVNGATEFIP 893
Query: 544 NDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD 596
ND + +I ++TG N +GKS ++ + V ++ +G +VP + A + D
Sbjct: 894 NDVHLGKSTAQIALLTGANAAGKSTILRMTCIAVIMAQLGCYVPCEDAELSPMD 947
Score = 57 (25.1 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
Identities = 27/134 (20%), Positives = 57/134 (42%)
Query: 11 GHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSEESFLSALKR 70
G G ++ D++ ++ +LE +ED +S+ +D + Q +P+ + ++ + +
Sbjct: 393 GRLFGTAFIDTATGRICLLE-FED-DSECTQLDTLMAQVRPKEVVMEKRNLSVIAHKIVK 450
Query: 71 SDGTTEAPTVKLVKSSIFSYEQAWHRLI---YLRVTGMDDGLSIKERICYLNSMMDMGSE 127
+ + + + Y + + + Y GMD +I L D G +
Sbjct: 451 FNSQPDCIFNYRTSAEFYDYARTFDEVSNGGYF--AGMDSWPAI------LKQYYDQGKK 502
Query: 128 VQVRASGGLLAVLE 141
V A GGLL+ L+
Sbjct: 503 VGFSAFGGLLSYLQ 516
Score = 48 (22.0 bits), Expect = 1.5e-14, Sum P(3) = 1.5e-14
Identities = 23/93 (24%), Positives = 39/93 (41%)
Query: 427 QLQGFEFAFSDMDGETKRL----FYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHIC 482
Q QG F + +D T R+ F + +LD L+ + K + ME+ +++H
Sbjct: 390 QQQGRLFGTAFIDTATGRICLLEFEDDSECTQLDTLMAQVRPKEVVMEKR-NLSVIAH-- 446
Query: 483 LFSDHLLKAVNFAAELDCFLSLALVAHQNNYMR 515
K V F ++ DC + A +Y R
Sbjct: 447 -------KIVKFNSQPDCIFNYRTSAEFYDYAR 472
Score = 43 (20.2 bits), Expect = 1.5e-14, Sum P(3) = 1.5e-14
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 297 HVNKIFEVGISES-LREQLRLLNFDIVEKAASCI 329
H K+ +V ES L +++R N IVE+ C+
Sbjct: 313 HGYKVAKVDQKESMLAKEMREGNKGIVERELQCV 346
>UNIPROTKB|F1SQH4 [details] [associations]
symbol:LOC100739713 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
SUPFAM:SSF48334 GeneTree:ENSGT00550000074867 EMBL:CU928288
RefSeq:XP_003481267.1 Ensembl:ENSSSCT00000009231 GeneID:100739713
KEGG:ssc:100739713 ArrayExpress:F1SQH4 Uniprot:F1SQH4
Length = 450
Score = 303 (111.7 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 95/298 (31%), Positives = 150/298 (50%)
Query: 468 DMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNN--YMRPILTLEP--- 522
+ + AI +++V+ + + + + A+LD +S A V++ Y+RP++ LE
Sbjct: 88 EAQNAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPVI-LEKGQG 146
Query: 523 LLDIQNGRHVLQEMTVDT-FIPNDTRIDNDGRI-NIITGPNYSGKSIYIKQVALIVFLSH 580
+ ++ RH E+ + FIPND + D ++ +IITGPN GKS YI+Q ++V ++
Sbjct: 147 RITLKASRHACVEVQDEVAFIPNDVHFEKDKQMFHIITGPNMGGKSTYIRQTGVVVLMAQ 206
Query: 581 IGSFVPADAATVGLTDS--KHMTAEQS------SFMIDLHQVGMMLRQATSQSLCLLDEF 632
IG FVP ++A V + D + A S +FM ++ + +LR AT SL ++DE
Sbjct: 207 IGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDEL 266
Query: 633 GKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTH---LTELLNEGCLPKSERLKFYTMSV 689
G+GT T DG GL Y T + + TH LT L N+ +P L ++
Sbjct: 267 GRGTSTYDGFGLAWAISEYIAT-KIGAFCMFATHFHELTALANQ--IPTVNNLH---VTA 320
Query: 690 LRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVI---KRAAYVLEAAQN 744
L E E + LY++ G S+G+H A LA P VI K+ A LE QN
Sbjct: 321 LTTE------ETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIECAKQKALELEEFQN 372
Score = 40 (19.1 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 25/110 (22%), Positives = 46/110 (41%)
Query: 59 KSEESFLSALKRSDGTTEAPTVKLVKSSIFSYEQAWHRLIYLRVTGMDDGLSIKERICYL 118
K +S L + R G +KL S+ F Y Y RVT ++ + ++ +
Sbjct: 6 KKMQSTLISAARDLGLDPGKQIKLDSSAQFGY--------YFRVTCKEEKV-LRNNKNF- 55
Query: 119 NSMMDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVS 168
S +D+ V+ + L L E + E +E+ NA + ++ +S
Sbjct: 56 -STVDIQKN-GVKFTNSKLTSLNEEYTKNKTEYEEAQNA--IVKEIVNIS 101
>UNIPROTKB|Q5VR41 [details] [associations]
symbol:OJ1174_D05.15 "Os01g0180600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 EMBL:AP008207 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 InterPro:IPR015536 PANTHER:PTHR11361:SF31
HOGENOM:HOG000030287 ProtClustDB:CLSN2680110 EMBL:AP003047
EMBL:AP003118 RefSeq:NP_001042208.1 UniGene:Os.74356 STRING:Q5VR41
EnsemblPlants:LOC_Os01g08540.1 GeneID:4325353 KEGG:osa:4325353
OMA:KFYELYD Uniprot:Q5VR41
Length = 1224
Score = 248 (92.4 bits), Expect = 3.1e-24, Sum P(2) = 3.1e-24
Identities = 64/214 (29%), Positives = 107/214 (50%)
Query: 537 TVDTFIPNDTRIDND--GRIN---IITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAAT 591
+V+ +PND + + G+ ++TGPN GKS ++ L + L+ +G +VP +
Sbjct: 945 SVNGLVPNDLSLGQNLSGQNRFALLLTGPNMGGKSTIMRATCLAIVLAQLGCYVPCQSCE 1004
Query: 592 VGLTDS--------KHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIG 643
+ L D+ + + +S+F+++ + +L AT SL LLDE G+GT T DG
Sbjct: 1005 LTLADAIFTRIGAMDRIMSGESTFLVECTETASILENATEDSLVLLDELGRGTSTFDGYA 1064
Query: 644 LLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVE-DI 702
+ + V V ++L TH L E L+ + +L+P N E ++
Sbjct: 1065 IAYAVFRHLVEA-VRCRLLFATHYHPLTKEFASHPHVTLQ-HMACMLKPRNGGDGGEKEL 1122
Query: 703 VFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAA 736
FLYRL G SYGL A +AG+P +++RA+
Sbjct: 1123 TFLYRLTSGACPESYGLQVATMAGLPRSIVERAS 1156
Score = 121 (47.7 bits), Expect = 3.1e-24, Sum P(2) = 3.1e-24
Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 205 SVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVK 264
+++ +N C+TP G+RLLR W P+ D++ +N RL+ + F+ + L + E L+ V
Sbjct: 711 TLYKHLNHCITPCGKRLLRRWICHPLKDIDAINERLDIVEGFIQNCGLGSVTLEHLRKVP 770
Query: 265 DIPHILKKFNS 275
D+ +L + S
Sbjct: 771 DLERLLGRVKS 781
>CGD|CAL0006305 [details] [associations]
symbol:MSH6 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0000710 "meiotic mismatch repair" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032138 "single base
insertion or deletion binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0006305 GO:GO:0005524 GO:GO:0006298
EMBL:AACQ01000010 EMBL:AACQ01000009 GO:GO:0030983 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261
PIRSF:PIRSF037677 RefSeq:XP_722156.1 RefSeq:XP_722270.1
ProteinModelPortal:Q5AL33 STRING:Q5AL33 GeneID:3636059
GeneID:3636161 KEGG:cal:CaO19.12411 KEGG:cal:CaO19.4945
Uniprot:Q5AL33
Length = 1214
Score = 253 (94.1 bits), Expect = 4.7e-24, Sum P(2) = 4.7e-24
Identities = 75/281 (26%), Positives = 139/281 (49%)
Query: 489 LKAVNFAAELDCFLSLALVAHQNNY--MRPILTLEPLLDIQNGRHVLQEMTVDT--FIPN 544
++ + A +DC L+L + Y RP L +E N + + V T FIPN
Sbjct: 893 MQVIQTIANIDCLLALTKASETIGYPSCRPKL-IEADKGCINFKELRHPCFVSTKEFIPN 951
Query: 545 DTRIDNDG-RINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD------- 596
D ++ D ++TG N +GKS ++ AL + LS IG ++PA++A + D
Sbjct: 952 DVQLGGDEPHFGLLTGANAAGKSTLMRTTALAIILSQIGCYIPAESAELTPVDRIMTRLG 1011
Query: 597 -SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTC 655
+ ++ +S+F ++L + +L AT +SL +LDE G+G + DG + +++ T
Sbjct: 1012 ANDNILQGKSTFFVELSETKKILSNATPRSLVILDELGRGGSSSDGFAIAESVLHHLAT- 1070
Query: 656 DVPPKVLVCTHLTEL-LNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHAL 714
V TH L L+ P+ ++L+ M ++ ++ S +I FLY+L G A
Sbjct: 1071 HVQSLGFFATHYGTLGLSFKTHPQIKQLR---MGIV-VDSGS---RNITFLYKLETGTAP 1123
Query: 715 LSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERWSHEN 755
S+G++ A + G+P ++ A +A + +++ + E+
Sbjct: 1124 KSFGMNVASMCGIPDAIVDNAEIAAKAYEQTSKLKKLAEES 1164
Score = 114 (45.2 bits), Expect = 4.7e-24, Sum P(2) = 4.7e-24
Identities = 61/290 (21%), Positives = 125/290 (43%)
Query: 15 GVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQP-QIIYTSTKSEESFLSALKRSDG 73
GV++ D++ +L+ +E+ D +++ +D + Q P +II + LK
Sbjct: 460 GVAFVDTATSELNFIEL--DDDAECTKLDTLITQINPKEIICEKGNLCQIATKILKFCTH 517
Query: 74 TTEAPTVKLVKSSIF-SYEQAWHRLIYLRVTGMDDGLSIKERICYLNSMMDMGSEVQV-- 130
+ L + F Y+ A +L+ + D ++ + Y ++D QV
Sbjct: 518 SDHQIWNALNPITEFWDYDIALEQLVKAKYY---DAENLDDYSNYPKVLVDFKENHQVAF 574
Query: 131 RASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQTDK 190
A GGLL L+ ++ DT GN + I + + LD L+I
Sbjct: 575 NAFGGLLYYLKMLKL-DT-SIMSLGNIH---EYHISRNSASHMILDGVTLNNLEILNNTS 629
Query: 191 HPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSE 250
+ G ++F ++N+ T G+R L+ W L P+ ++ +N R +++ + +
Sbjct: 630 DGTTKG--------TLFKLVNRATTSFGKRQLQKWVLHPLFKVDEINQRYDSVDYLMNDG 681
Query: 251 -ELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVN 299
EL + L +TL + D+ +L + + + + D+ ++S S+ V+
Sbjct: 682 LELRSILQDTLANIPDLERLLARVHGGTLKFR--DFLKVIESFESIAGVS 729
Score = 39 (18.8 bits), Expect = 3.1e-16, Sum P(2) = 3.1e-16
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 454 ELDNLLGDIYHKILDMERAITR 475
EL ++L D I D+ER + R
Sbjct: 683 ELRSILQDTLANIPDLERLLAR 704
>DICTYBASE|DDB_G0283957 [details] [associations]
symbol:msh4 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=ISS;IBA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0000228
"nuclear chromosome" evidence=ISS] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0051026 "chiasma assembly" evidence=IBA] [GO:0045143
"homologous chromosome segregation" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0283957 GO:GO:0005524
GenomeReviews:CM000153_GR GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
EMBL:AAFI02000058 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 KO:K08740 SUPFAM:SSF48334
SUPFAM:SSF53150 OMA:MSGKSVY RefSeq:XP_638826.1
ProteinModelPortal:Q54QB8 EnsemblProtists:DDB0229912 GeneID:8624350
KEGG:ddi:DDB_G0283957 InParanoid:Q54QB8 ProtClustDB:CLSZ2728957
Uniprot:Q54QB8
Length = 1041
Score = 267 (99.0 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 89/312 (28%), Positives = 152/312 (48%)
Query: 461 DIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAE---LDCFLSLALVAHQ-NNYMRP 516
+++ +I+ + L+ + H+ + N + LD +S AL + Q + + P
Sbjct: 689 EVFEEIIILSAQSIEKLIE---FYRSHISELYNISESISLLDFLVSGALYSLQLDQSVCP 745
Query: 517 -ILTLEPLLDIQNGRHVLQ-------EMTVDTFIPNDTRIDNDGRINIITGPNYSGKSIY 568
I + L I++G H LQ E F+PNDT I+ +I G N SGKS Y
Sbjct: 746 EIFNGKGPLAIKSGYHPLQLKKSKKKESFSTCFVPNDTLINETASFQLIHGCNMSGKSTY 805
Query: 569 IKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQ 620
I+QVAL+ ++HIG F+PA+ ATV + D S ++ + S+FM ++ ++ +L
Sbjct: 806 IQQVALLTIVAHIGYFLPAEFATVPIVDQIISRLGTSDNIQSNASTFMTEMKEISYILEN 865
Query: 621 ATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSE 680
T SL ++DE G+GT DG + +I+ ++ + L TH +LLN +
Sbjct: 866 TTESSLVIIDELGRGTSNMDGSSI-AWSISEHLSM-IGCYTLFVTHYQQLLNLATFYPNI 923
Query: 681 RLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALL-SYGLHCALLAGVPAEVIKRAAYV- 738
R+ + +S D + + Y G + + SYG+ A LAG+ ++VI+ A +
Sbjct: 924 RVYHFQVS-------KDDSSGLKYNYLFSEGVSSIDSYGVETAELAGIDSKVIQSAKTIR 976
Query: 739 --LEAAQNNKHV 748
LE+ NN +
Sbjct: 977 NLLESKSNNNQI 988
Score = 93 (37.8 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 44/199 (22%), Positives = 84/199 (42%)
Query: 106 DDGLSIKERICYLNSMMDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSVI 165
+DG+S+ + C ++D S ++ +L++ ++ LEQ I
Sbjct: 334 NDGISLMNQYC----LIDKISIIEKFTKDKVLSLSSFNALIKYLEQDGIMFVKNCIRIKY 389
Query: 166 EVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNW 225
S N +++DA + L++ + K S +++ +N T G RLL +
Sbjct: 390 SGSENS-MQIDAETIKNLELIHSSKDGSR--------NCTLYQSINNTSTSQGSRLLISA 440
Query: 226 FLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDW 285
++P D E + R NAI L ++ ++ +L L ++DI L F+ + T
Sbjct: 441 IVQPSNDFETIKHRQNAIKQLLSNQRVVFTLTPLLSKIQDIDKTLLLFSQQNKQVTIKSI 500
Query: 286 TAFLKSICSLLHVNKIFEV 304
+K C + IFE+
Sbjct: 501 ETSIK--C-FIDFKNIFEL 516
Score = 39 (18.8 bits), Expect = 6.1e-18, Sum P(2) = 6.1e-18
Identities = 19/82 (23%), Positives = 33/82 (40%)
Query: 249 SEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLK-SICSLLHVNKIFEVGIS 307
+ E++ + VK IP I K FN I + + K SI +K+ +
Sbjct: 307 NREMVKLIENAYPNVKIIPIIKKLFNENDGISLMNQYCLIDKISIIEKFTKDKVLSLSSF 366
Query: 308 ESLREQLRLLNFDIVEKAASCI 329
+L ++ L D + +CI
Sbjct: 367 NAL---IKYLEQDGIMFVKNCI 385
>UNIPROTKB|F1PM27 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 Pfam:PF00855 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812
SMART:SM00293 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 EMBL:AAEX03007503
Ensembl:ENSCAFT00000004197 Uniprot:F1PM27
Length = 1263
Score = 242 (90.2 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 66/214 (30%), Positives = 105/214 (49%)
Query: 539 DTFIPNDTRI------DNDGRIN--IITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAA 590
D FIPND I + +G+ ++TGPN GKS ++Q L+ ++ +G +VPA+
Sbjct: 1035 DDFIPNDILIGCEEEEEENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVC 1094
Query: 591 TVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGI 642
+ D S + + +S+F ++L + +L AT+ SL L+DE G+GT T DG
Sbjct: 1095 RLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLVLVDELGRGTATFDGT 1154
Query: 643 GLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDV--E 700
+ + ++ + L TH L+ + + RL V EN D E
Sbjct: 1155 AIANAVVKELAE-NIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV---ENECEDPSQE 1210
Query: 701 DIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKR 734
I FLY+ + G SYG + A LA +P EVI++
Sbjct: 1211 TITFLYKFIKGACPKSYGFNAARLANLPEEVIQK 1244
Score = 119 (46.9 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 32/123 (26%), Positives = 58/123 (47%)
Query: 153 ESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNK 212
+S S T + N+ + LDA L+IF G + EG ++ ++
Sbjct: 641 DSDVVSATRPGAVFAKANQRMVLDAVTLSNLEIFMN-------GTNGSTEG-TLLEKIDT 692
Query: 213 CVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKK 272
C TP G+RLL+ W P+ +N RL+AI + + ++ + + LK + D+ +L K
Sbjct: 693 CHTPFGKRLLKQWLCAPLCSPYAINDRLDAIEDLMVVPDKISDVADLLKKLPDLERLLSK 752
Query: 273 FNS 275
++
Sbjct: 753 IHN 755
>RGD|2322311 [details] [associations]
symbol:Msh6 "mutS homolog 6 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003682 "chromatin
binding" evidence=ISO] [GO:0003684 "damaged DNA binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA;ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair"
evidence=IEA;ISO] [GO:0008340 "determination of adult lifespan"
evidence=ISO] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=ISO] [GO:0009411 "response to UV"
evidence=ISO] [GO:0016446 "somatic hypermutation of immunoglobulin
genes" evidence=ISO] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=ISO] [GO:0030983 "mismatched
DNA binding" evidence=IEA;ISO] [GO:0032137 "guanine/thymine mispair
binding" evidence=ISO] [GO:0032301 "MutSalpha complex"
evidence=ISO] [GO:0045190 "isotype switching" evidence=ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0051096 "positive regulation of helicase
activity" evidence=ISO] [GO:0097193 "intrinsic apoptotic signaling
pathway" evidence=ISO] [GO:0042803 "protein homodimerization
activity" evidence=ISO] [GO:0043570 "maintenance of DNA repeat
elements" evidence=ISO] [GO:0000287 "magnesium ion binding"
evidence=ISO] [GO:0000400 "four-way junction DNA binding"
evidence=ISO] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0032142 "single guanine insertion binding" evidence=ISO]
[GO:0032143 "single thymine insertion binding" evidence=ISO]
[GO:0032357 "oxidized purine DNA binding" evidence=ISO] [GO:0032405
"MutLalpha complex binding" evidence=ISO] [GO:0043531 "ADP binding"
evidence=ISO] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 RGD:2322311 GO:GO:0005524 GO:GO:0008340
GO:GO:0009411 GO:GO:0008630 GO:GO:0000287 GO:GO:0043531
GO:GO:0003682 GO:GO:0016887 GO:GO:0006298 GO:GO:0000790
GO:GO:0045190 InterPro:IPR000313 PROSITE:PS50812 GO:GO:0045910
SMART:SM00293 EMBL:CH473947 GO:GO:0016446 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0032301 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GO:GO:0032357 GO:GO:0032142 GO:GO:0032143
GO:GO:0051096 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 OrthoDB:EOG4CG07F IPI:IPI00369351
RefSeq:XP_002726765.1 RefSeq:XP_002729643.2
Ensembl:ENSRNOT00000021923 GeneID:100360342 KEGG:rno:100360342
UCSC:RGD:2322311 Uniprot:D4A0U9
Length = 1361
Score = 251 (93.4 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
Identities = 68/214 (31%), Positives = 108/214 (50%)
Query: 539 DTFIPNDTRI------DNDGRIN--IITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAA 590
D FIPND I + DG+ ++TGPN GKS I+Q L+ ++ +G +VPA+
Sbjct: 1107 DDFIPNDILIGCEEDAEADGKAYCVLVTGPNMGGKSTLIRQAGLLAVMAQMGCYVPAELC 1166
Query: 591 TVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGI 642
+ D S + + +S+F ++L + +LR AT+ SL L+DE G+GT T DG
Sbjct: 1167 RLTPVDRVFTRLGASDRIMSGESTFFVELSETASILRHATAHSLVLVDELGRGTATFDGT 1226
Query: 643 GLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDV--E 700
+ + + + L TH L+ + K+ ++ M+ + EN D E
Sbjct: 1227 AIASAVVKELAET-IKCRTLFSTHYHSLVED--YSKNVCVRLGHMACM-VENECEDPSQE 1282
Query: 701 DIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKR 734
I FLY+ + G SYG + A LA +P EVI++
Sbjct: 1283 TITFLYKFIKGACPKSYGFNAARLANLPEEVIQK 1316
Score = 110 (43.8 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
Identities = 28/101 (27%), Positives = 50/101 (49%)
Query: 175 LDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLE 234
LDA L+IF G + EG ++ ++ C TP G+RLL+ W P+
Sbjct: 735 LDAVTLSNLEIFLN-------GTNGSTEG-TLLERLDTCHTPFGKRLLKQWLCAPLCSPS 786
Query: 235 NLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNS 275
++ RL+AI + + +A + + LK + D+ +L K ++
Sbjct: 787 AISDRLDAIEDLMAVPDKVAEVADLLKKLPDLERLLSKIHN 827
>UNIPROTKB|Q5BDA1 [details] [associations]
symbol:AN1479.2 "DNA-binding protein of the mitochondria
(Eurofung)" species:227321 "Aspergillus nidulans FGSC A4"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0005739
"mitochondrion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032139 "dinucleotide insertion or
deletion binding" evidence=IBA] [GO:0032300 "mismatch repair
complex" evidence=IBA] [GO:0043504 "mitochondrial DNA repair"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IRD]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0000710 "meiotic
mismatch repair" evidence=IRD] [GO:0007131 "reciprocal meiotic
recombination" evidence=IRD] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IRD] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005739 GO:GO:0005524
GO:GO:0003684 EMBL:BN001307 GO:GO:0006298 GO:GO:0008094
EMBL:AACD01000022 GO:GO:0043504 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150
GO:GO:0032300 GO:GO:0032139 RefSeq:XP_659083.1 STRING:Q5BDA1
EnsemblFungi:CADANIAT00008100 GeneID:2875263 KEGG:ani:AN1479.2
OMA:RVGGFYE Uniprot:Q5BDA1
Length = 924
Score = 308 (113.5 bits), Expect = 5.2e-23, Sum P(2) = 5.2e-23
Identities = 96/328 (29%), Positives = 159/328 (48%)
Query: 426 EQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFS 485
+QL+ + ++ R FY P EL + I +I E+AI L + L
Sbjct: 589 QQLEDIGVTRNVSSTKSTRSFY-LPAWTELGGRMDQIKVQIRQEEQAIFEQLRREVILNL 647
Query: 486 DHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTVDT----F 541
+ + + ELD S A +A + +RPILT I GRH ++ ++ F
Sbjct: 648 VKIRRNASVMDELDVACSFATLAAEQQLVRPILTEGTNYKIIGGRHPTVKLGLEEQGRRF 707
Query: 542 IPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD----- 596
+ ND + RI +ITGPN +GKS +++Q ALI L+ +GSFVPAD A +G+ D
Sbjct: 708 VSNDCFLGESERIWLITGPNMAGKSTFLRQNALITILAQVGSFVPADYAEIGIVDQIFSR 767
Query: 597 ---SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFV 653
+ + +QS+FM+++ + +L+QAT++S ++DE G+GT EDG + +++
Sbjct: 768 IGAADDLFRDQSTFMVEMLETAAILKQATARSFVIMDEVGRGTTPEDGTAVSFACLHHLH 827
Query: 654 TCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHA 713
+ + L TH L + + L Y V T F+++L G
Sbjct: 828 YRN-QCRTLFATHFHGLAD--MTQEFPALGRYCTDV-----KETTEGRFSFVHKLRKGIN 879
Query: 714 LLSYGLHCALLAGVPAEVIKRAAYVLEA 741
S+ L A LAG+P+E ++ A V ++
Sbjct: 880 RESHALKVAQLAGLPSETLELARSVRDS 907
Score = 43 (20.2 bits), Expect = 5.2e-23, Sum P(2) = 5.2e-23
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 273 FNSPSFIYTASDWTAFLKSICSLLHVNKIF--EVGISESLREQLRL 316
F+ P I SDW + L++ ++ EV SL E +R+
Sbjct: 314 FSFPEKISPVSDWASMLEAPLPSTSIDAFSQEEVAAGYSLLEYIRV 359
>MGI|MGI:1343961 [details] [associations]
symbol:Msh6 "mutS homolog 6 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IGI;IMP] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003684 "damaged DNA binding" evidence=IGI;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006298
"mismatch repair" evidence=ISO;IGI;IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0008630 "intrinsic apoptotic signaling
pathway in response to DNA damage" evidence=IMP] [GO:0009411
"response to UV" evidence=IMP] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IMP]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=ISO;IDA] [GO:0043570 "maintenance of
DNA repeat elements" evidence=IBA] [GO:0045190 "isotype switching"
evidence=IMP] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISO;IMP] [GO:0051096 "positive regulation
of helicase activity" evidence=ISO] [GO:0097193 "intrinsic
apoptotic signaling pathway" evidence=IMP] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 MGI:MGI:1343961 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0000287 GO:GO:0003684 GO:GO:0043531 GO:GO:0003682
GO:GO:0000790 GO:GO:0045190 GO:GO:0007131 InterPro:IPR000313
PROSITE:PS50812 GO:GO:0043570 GO:GO:0045910 SMART:SM00293
GO:GO:0008094 GO:GO:0016446 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 HOGENOM:HOG000243127
KO:K08737 OMA:YHMDAVI InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677 CTD:2956
GeneTree:ENSGT00550000075024 HOVERGEN:HBG000101 OrthoDB:EOG4CG07F
EMBL:U42190 EMBL:AF031087 EMBL:AF031085 EMBL:AF031086 EMBL:BC051160
EMBL:BC051634 EMBL:U61388 EMBL:U61389 IPI:IPI00323790
RefSeq:NP_034960.1 UniGene:Mm.18210 ProteinModelPortal:P54276
SMR:P54276 IntAct:P54276 STRING:P54276 PhosphoSite:P54276
PaxDb:P54276 PRIDE:P54276 Ensembl:ENSMUST00000005503 GeneID:17688
KEGG:mmu:17688 InParanoid:Q6GTK8 ChiTaRS:MSH6 NextBio:292264
Bgee:P54276 CleanEx:MM_MSH6 Genevestigator:P54276
GermOnline:ENSMUSG00000005370 Uniprot:P54276
Length = 1358
Score = 250 (93.1 bits), Expect = 5.6e-23, Sum P(2) = 5.6e-23
Identities = 68/214 (31%), Positives = 107/214 (50%)
Query: 539 DTFIPNDTRI------DNDGRIN--IITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAA 590
D FIPND I + G+ ++TGPN GKS I+Q L+ ++ +G +VPA+
Sbjct: 1104 DDFIPNDILIGCEEEAEEHGKAYCVLVTGPNMGGKSTLIRQAGLLAVMAQLGCYVPAEKC 1163
Query: 591 TVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGI 642
+ D S + + +S+F ++L + +LR AT+ SL L+DE G+GT T DG
Sbjct: 1164 RLTPVDRVFTRLGASDRIMSGESTFFVELSETASILRHATAHSLVLVDELGRGTATFDGT 1223
Query: 643 GLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDV--E 700
+ + + + L TH L+ + KS ++ M+ + EN D E
Sbjct: 1224 AIANAVVKELAET-IKCRTLFSTHYHSLVED--YSKSVCVRLGHMACM-VENECEDPSQE 1279
Query: 701 DIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKR 734
I FLY+ + G SYG + A LA +P EVI++
Sbjct: 1280 TITFLYKFIKGACPKSYGFNAARLANLPEEVIQK 1313
Score = 108 (43.1 bits), Expect = 5.6e-23, Sum P(2) = 5.6e-23
Identities = 35/159 (22%), Positives = 72/159 (45%)
Query: 126 SEVQVRASGGLLAVLE----NERIVDTLEQKE-----SGNASITIDSVIEVSLNKFLKLD 176
SE+ + A GG++ L+ ++ ++ +E S S + ++ + LD
Sbjct: 674 SELALSALGGIVFYLKKCLIDQELLSMANFEEYFPLDSDTVSTVKPGAVFTKASQRMVLD 733
Query: 177 ATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENL 236
A L+IF G + EG ++ ++ C TP G+RLL+ W P+ +
Sbjct: 734 AVTLNNLEIFLN-------GTNGSTEG-TLLERLDTCHTPFGKRLLKQWLCAPLCSPSAI 785
Query: 237 NSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNS 275
+ RL+A+ + + + + + LK + D+ +L K ++
Sbjct: 786 SDRLDAVEDLMAVPDKVTEVADLLKKLPDLERLLSKIHN 824
>UNIPROTKB|E1B9Q4 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0045190 "isotype switching"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0032405
"MutLalpha complex binding" evidence=IEA] [GO:0032357 "oxidized
purine DNA binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032143 "single thymine insertion binding"
evidence=IEA] [GO:0032142 "single guanine insertion binding"
evidence=IEA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0000400 "four-way junction DNA
binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0000287 GO:GO:0043531 GO:GO:0003682 GO:GO:0016887
GO:GO:0006298 GO:GO:0000790 GO:GO:0045190 InterPro:IPR000313
PROSITE:PS50812 GO:GO:0045910 SMART:SM00293 GO:GO:0016446
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0032301
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032357 GO:GO:0032142
GO:GO:0032143 GO:GO:0051096 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 CTD:2956 GeneTree:ENSGT00550000075024
EMBL:DAAA02030744 IPI:IPI00714742 RefSeq:NP_001179666.1
UniGene:Bt.98842 Ensembl:ENSBTAT00000001867 GeneID:540526
KEGG:bta:540526 NextBio:20878683 Uniprot:E1B9Q4
Length = 1360
Score = 243 (90.6 bits), Expect = 6.0e-23, Sum P(2) = 6.0e-23
Identities = 66/214 (30%), Positives = 105/214 (49%)
Query: 539 DTFIPNDTRI------DNDGRIN--IITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAA 590
D FIPND I + +G+ ++TGPN GKS ++Q L+ ++ +G +VPA+
Sbjct: 1106 DDFIPNDILIGCEEEEEENGKAYCVLVTGPNMGGKSTLMRQAGLLAIMAQMGCYVPAEVC 1165
Query: 591 TVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGI 642
+ D S + + +S+F ++L + +L AT+ SL L+DE G+GT T DG
Sbjct: 1166 RLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLVLVDELGRGTATFDGT 1225
Query: 643 GLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDV--E 700
+ + ++ + L TH L+ + + RL V EN D E
Sbjct: 1226 AIANAVVKELAE-NIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV---ENECEDPSQE 1281
Query: 701 DIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKR 734
I FLY+ + G SYG + A LA +P EVI++
Sbjct: 1282 TITFLYKFIKGACPKSYGFNAARLANLPEEVIQK 1315
Score = 115 (45.5 bits), Expect = 6.0e-23, Sum P(2) = 6.0e-23
Identities = 31/123 (25%), Positives = 58/123 (47%)
Query: 153 ESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNK 212
+S T + N+ + LDA L+IF G + EG ++ ++
Sbjct: 712 DSDMVHATRPGAVFAKANQRMVLDAVTLNNLEIFLN-------GTNGSTEG-TLLEKIDT 763
Query: 213 CVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKK 272
C TP G+RLL+ W P+ + +N RL+AI + + ++ + + LK + D+ +L K
Sbjct: 764 CHTPFGKRLLKQWLCAPLCNPHAINDRLDAIEDLMVVPDKISEVVDLLKKLPDLERLLSK 823
Query: 273 FNS 275
++
Sbjct: 824 IHN 826
>UNIPROTKB|F5H2F9 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0008340
GO:GO:0009411 GO:GO:0008630 GO:GO:0003684 GO:GO:0003682
GO:GO:0006298 GO:GO:0000790 GO:GO:0045190 GO:GO:0045910
GO:GO:0016446 EMBL:AC006509 SUPFAM:SSF48334 GO:GO:0032137
GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 HGNC:HGNC:7329 IPI:IPI01013073
ProteinModelPortal:F5H2F9 SMR:F5H2F9 Ensembl:ENST00000538136
ArrayExpress:F5H2F9 Bgee:F5H2F9 Uniprot:F5H2F9
Length = 1058
Score = 238 (88.8 bits), Expect = 6.5e-23, Sum P(2) = 6.5e-23
Identities = 66/214 (30%), Positives = 104/214 (48%)
Query: 539 DTFIPNDTRI--DNDGRIN------IITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAA 590
D FIPND I + + + N ++TGPN GKS ++Q L+ ++ +G +VPA+
Sbjct: 804 DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVC 863
Query: 591 TVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGI 642
+ D S + + +S+F ++L + +L AT+ SL L+DE G+GT T DG
Sbjct: 864 RLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGT 923
Query: 643 GLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDV--E 700
+ + + + L TH L+ + + RL V EN D E
Sbjct: 924 AIANAVVKELAET-IKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV---ENECEDPSQE 979
Query: 701 DIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKR 734
I FLY+ + G SYG + A LA +P EVI++
Sbjct: 980 TITFLYKFIKGACPKSYGFNAARLANLPEEVIQK 1013
Score = 117 (46.2 bits), Expect = 6.5e-23, Sum P(2) = 6.5e-23
Identities = 33/123 (26%), Positives = 58/123 (47%)
Query: 153 ESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNK 212
+S S T I + + LDA L+IF G + EG ++ ++
Sbjct: 411 DSDTVSTTRSGAIFTKAYQRMVLDAVTLNNLEIFLN-------GTNGSTEG-TLLERVDT 462
Query: 213 CVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKK 272
C TP G+RLL+ W P+ + +N RL+AI + + ++ + E LK + D+ +L K
Sbjct: 463 CHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSK 522
Query: 273 FNS 275
++
Sbjct: 523 IHN 525
Score = 37 (18.1 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 27/111 (24%), Positives = 50/111 (45%)
Query: 294 SLLHVNKIFEVGISESLRE--QLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKE 351
S L+V + F + +R+ Q++ NFD+V EL Y + +IG+ ++
Sbjct: 92 STLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKVGKFYEL-YHMDALIGVSELGLVFM 150
Query: 352 KGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHL----CKEM 398
KG GF E+ + + L + +VA +E + P + C++M
Sbjct: 151 KG--NWAHSGF-PEI-AFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKM 197
>UNIPROTKB|B4DF41 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
EMBL:AC006509 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 UniGene:Hs.445052 HGNC:HGNC:7329
HOVERGEN:HBG000101 EMBL:AK293921 IPI:IPI01014931 SMR:B4DF41
STRING:B4DF41 Ensembl:ENST00000540021 Uniprot:B4DF41
Length = 1230
Score = 238 (88.8 bits), Expect = 9.9e-23, Sum P(2) = 9.9e-23
Identities = 66/214 (30%), Positives = 104/214 (48%)
Query: 539 DTFIPNDTRI--DNDGRIN------IITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAA 590
D FIPND I + + + N ++TGPN GKS ++Q L+ ++ +G +VPA+
Sbjct: 976 DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVC 1035
Query: 591 TVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGI 642
+ D S + + +S+F ++L + +L AT+ SL L+DE G+GT T DG
Sbjct: 1036 RLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGT 1095
Query: 643 GLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDV--E 700
+ + + + L TH L+ + + RL V EN D E
Sbjct: 1096 AIANAVVKELAET-IKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV---ENECEDPSQE 1151
Query: 701 DIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKR 734
I FLY+ + G SYG + A LA +P EVI++
Sbjct: 1152 TITFLYKFIKGACPKSYGFNAARLANLPEEVIQK 1185
Score = 117 (46.2 bits), Expect = 9.9e-23, Sum P(2) = 9.9e-23
Identities = 33/123 (26%), Positives = 58/123 (47%)
Query: 153 ESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNK 212
+S S T I + + LDA L+IF G + EG ++ ++
Sbjct: 583 DSDTVSTTRSGAIFTKAYQRMVLDAVTLNNLEIFLN-------GTNGSTEG-TLLERVDT 634
Query: 213 CVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKK 272
C TP G+RLL+ W P+ + +N RL+AI + + ++ + E LK + D+ +L K
Sbjct: 635 CHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSK 694
Query: 273 FNS 275
++
Sbjct: 695 IHN 697
Score = 37 (18.1 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 27/111 (24%), Positives = 50/111 (45%)
Query: 294 SLLHVNKIFEVGISESLRE--QLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKE 351
S L+V + F + +R+ Q++ NFD+V EL Y + +IG+ ++
Sbjct: 264 STLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKVGKFYEL-YHMDALIGVSELGLVFM 322
Query: 352 KGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHL----CKEM 398
KG GF E+ + + L + +VA +E + P + C++M
Sbjct: 323 KG--NWAHSGF-PEI-AFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKM 369
>ZFIN|ZDB-GENE-020905-3 [details] [associations]
symbol:msh6 "mutS homolog 6 (E. coli)" species:7955
"Danio rerio" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0032137
"guanine/thymine mispair binding" evidence=IGI] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=IBA] [GO:0032301 "MutSalpha
complex" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0045190 "isotype switching" evidence=IBA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 ZFIN:ZDB-GENE-020905-3 GO:GO:0005524
GO:GO:0009411 GO:GO:0008630 GO:GO:0003684 GO:GO:0045190
GO:GO:0007131 GO:GO:0000228 InterPro:IPR000313 PROSITE:PS50812
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 GO:GO:0016446
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 HSSP:P23909 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
HOVERGEN:HBG000101 EMBL:AF412834 IPI:IPI00513357 UniGene:Dr.4108
ProteinModelPortal:Q90XA6 SMR:Q90XA6 STRING:Q90XA6
InParanoid:Q90XA6 ArrayExpress:Q90XA6 Uniprot:Q90XA6
Length = 1369
Score = 235 (87.8 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 60/188 (31%), Positives = 96/188 (51%)
Query: 556 IITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSF 607
++TGPN GKS ++Q L+V L+ +G +VPA++ + D S + + +S+F
Sbjct: 1140 LVTGPNMGGKSTLMRQCGLVVILAQLGCYVPAESLRLTPVDRVFTRLGASDRIMSGESTF 1199
Query: 608 MIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHL 667
++L + +L AT+ SL LLDE G+GT T DG + + ++ + + L TH
Sbjct: 1200 FVELSETASILLHATNHSLVLLDELGRGTATYDGTAIASAVVKE-LSEKICCRTLFSTHY 1258
Query: 668 TELLNEGCLPKSERLKFYTMSVLRPENNSTDV--EDIVFLYRLVPGHALLSYGLHCALLA 725
L+ + + RL V EN D E I FLY+ + G SYG + A LA
Sbjct: 1259 HSLVEDHVQDPAVRLGHMACMV---ENECEDPSQETITFLYKFIRGACPKSYGFNAARLA 1315
Query: 726 GVPAEVIK 733
+P +VI+
Sbjct: 1316 NIPEDVIQ 1323
Score = 121 (47.7 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 65/292 (22%), Positives = 126/292 (43%)
Query: 10 HGHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYT----STKSEESFL 65
HGH GV + D+S+ + H+ + +D + L +V + + Q+I+ S ++ + F
Sbjct: 552 HGHIYGVCFIDTSVGRFHIGQFQDDRHCS-RLRTLVAHYSPAQVIFEKGNPSIETLKIFK 610
Query: 66 SALKRS--DGTTEAP-------TVK-LVKSSIFSYEQAWHRLIYLRVTGMDDGLSIKERI 115
+ + S +G T+K L + F + ++ + + + L
Sbjct: 611 AIVASSLQEGLNAGSQFWDAQKTLKVLAEEDYFKESKDDNK----KESVLPPALKAMTSE 666
Query: 116 CYLNSMMDM-GSEVQVRASGGLLAVLENERIVDTLEQKESGNAS--ITIDSVIE------ 166
C S+ G E+ + A GG + L+ + +VD E GN + +D +E
Sbjct: 667 CDALSLTPKTGYELALSALGGCMFYLK-KCLVDQ-ELFSMGNFEEYVPVDVEMEQAGGAS 724
Query: 167 ---VSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLR 223
N+ + LD L+I Q S G EG ++ ++ C TP G+RLL+
Sbjct: 725 CFFAKTNQRMVLDGVTLANLEILQN----SSTG---GPEG-TLLERLDTCCTPFGKRLLK 776
Query: 224 NWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNS 275
W P+ + ++ RL+A+ + + + + + LK + D+ +L K +S
Sbjct: 777 QWICAPLCNPSSIGDRLDALEDLMGAPSQTSEVTDLLKKLPDLERLLSKIHS 828
Score = 117 (46.2 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 45/166 (27%), Positives = 74/166 (44%)
Query: 452 TRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLK----AVNFAAELDCFLSLALV 507
T++++ + ++ D A +D + + D K AV A LD LS+
Sbjct: 1009 TKDIERMFSEL-QSWEDKRDAALKDCMRRLFYNFDKNYKDWQTAVECMAVLDVLLSMCRY 1067
Query: 508 AHQ--NNYMRPILTLE-------PLLDIQNGRH--VLQEMTVDTFIPNDTRI-------- 548
+ + RP + L P LD++ RH V + D FIPND I
Sbjct: 1068 SQSADGSMARPEMALPGDGSYSAPFLDLRGSRHPCVTKTFFGDDFIPNDIFIGCPGDEEE 1127
Query: 549 -DNDGRIN----IITGPNYSGKSIYIKQVALIVFLSHIGSFVPADA 589
+D + ++TGPN GKS ++Q L+V L+ +G +VPA++
Sbjct: 1128 AQDDAKALAPCVLVTGPNMGGKSTLMRQCGLVVILAQLGCYVPAES 1173
Score = 41 (19.5 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 397 EMFVPCIVYIHQIGYLMCIFEEK-----LDDTTLEQLQ 429
E +VP V + Q G C F + LD TL L+
Sbjct: 708 EEYVPVDVEMEQAGGASCFFAKTNQRMVLDGVTLANLE 745
>POMBASE|SPCC285.16c [details] [associations]
symbol:msh6 "MutS protein homolog" species:4896
"Schizosaccharomyces pombe" [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=IMP]
[GO:0032137 "guanine/thymine mispair binding" evidence=ISO]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPCC285.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0006298 GO:GO:0043570
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
OMA:YHMDAVI InterPro:IPR017261 PIRSF:PIRSF037677 EMBL:AF207839
PIR:T41262 RefSeq:NP_588344.1 ProteinModelPortal:O74502
STRING:O74502 EnsemblFungi:SPCC285.16c.1 GeneID:2539215
KEGG:spo:SPCC285.16c HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
NextBio:20800385 Uniprot:O74502
Length = 1254
Score = 259 (96.2 bits), Expect = 1.2e-22, Sum P(4) = 1.2e-22
Identities = 75/261 (28%), Positives = 129/261 (49%)
Query: 489 LKAVNFAAELDCFLSL--ALVAHQNNYMRP--ILTLEPLLDIQNGRH-VLQEMTVDTFIP 543
L + + A +DCF SL A A Y RP I + L + RH + TF+P
Sbjct: 948 LALIKYTASIDCFFSLSQAAAALGEPYCRPEIIEQKDGHLYFEELRHPCINASAASTFVP 1007
Query: 544 NDTRIDNDG-RINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVG-LTD----- 596
ND + + + ++TGPN +GKS ++QV + V ++ +G +VPA A++ +T
Sbjct: 1008 NDVVLGGESPNMIVLTGPNMAGKSTLLRQVCIAVIMAQLGCWVPAKRASITPMTSIYTRL 1067
Query: 597 --SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVT 654
+ + + +S+FM++L + +L + +SL +LDE G+GT T DG + +++ V+
Sbjct: 1068 GANDDIMSARSTFMVELSETKKILDECGPKSLVILDELGRGTSTYDGHAIAYAVLHHLVS 1127
Query: 655 CDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHAL 714
++ TH L + + RL +V + + FLY+L G
Sbjct: 1128 -NIGCLGFFSTHYQSLCVDFMHHRQVRLMQMAAAV------DEKIRRVTFLYKLEDGICP 1180
Query: 715 LSYGLHCALLAGVPAEVIKRA 735
SYG++ A +AG+P +VI A
Sbjct: 1181 KSYGMNVASMAGLPEKVIDAA 1201
Score = 90 (36.7 bits), Expect = 1.2e-22, Sum P(4) = 1.2e-22
Identities = 17/74 (22%), Positives = 39/74 (52%)
Query: 202 EGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLK 261
EG ++F ++ +CVTP G+RL W P+ +N+RL+ + + + ++ L
Sbjct: 688 EG-TLFHLLCRCVTPFGKRLFHTWLCHPLRSGTAINARLDVVELIADNPVIRDTIWGFLH 746
Query: 262 YVKDIPHILKKFNS 275
+ D+ ++ + ++
Sbjct: 747 KLPDLERLISRVHA 760
Score = 48 (22.0 bits), Expect = 1.2e-22, Sum P(4) = 1.2e-22
Identities = 13/56 (23%), Positives = 28/56 (50%)
Query: 15 GVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQP-QIIYTSTKSEESFLSALK 69
G+ + D+S H+ E +D + +D + Q +P ++I +K + + A+K
Sbjct: 520 GICFIDTSTGGFHMCEFTDDIHRT--KLDTLLTQVRPKELILEKSKISQKSIRAIK 573
Score = 47 (21.6 bits), Expect = 1.2e-22, Sum P(4) = 1.2e-22
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 338 ELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQ-LPHLCK 396
E +I + RSK + V EGF Q+ EE E E E++Q P++ +
Sbjct: 752 ERLISRVHAGRSKPADF-VRVLEGFQRINSAFDQLREEFMEVAEGTLLGEIIQSAPNMKE 810
Query: 397 EM 398
E+
Sbjct: 811 EL 812
Score = 41 (19.5 bits), Expect = 3.1e-17, Sum P(3) = 3.1e-17
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 456 DNLLGDIYHKILDMERAITR 475
D + G + HK+ D+ER I+R
Sbjct: 739 DTIWGFL-HKLPDLERLISR 757
Score = 39 (18.8 bits), Expect = 7.5e-17, Sum P(2) = 7.5e-17
Identities = 18/84 (21%), Positives = 37/84 (44%)
Query: 402 CIVYIHQIGYLMCIFEEKLD----DTTLEQLQGFEFAF--SDMDGETKRLFYHTPKTREL 455
C + G+ MC F + + DT L Q++ E S + ++ R + + +
Sbjct: 522 CFIDTSTGGFHMCEFTDDIHRTKLDTLLTQVRPKELILEKSKISQKSIRAIKYCVSSSSI 581
Query: 456 DNLLGDIYHKILDMERAITRDLVS 479
N + Y + D ER + R++++
Sbjct: 582 WNFIKP-YTEFWDNER-VEREIIA 603
>UNIPROTKB|P52701 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=ISS;IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=ISS;IBA] [GO:0009411 "response to
UV" evidence=ISS;IBA] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=ISS;IBA] [GO:0045190 "isotype
switching" evidence=ISS;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0032405 "MutLalpha complex binding" evidence=IDA]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IDA;IMP] [GO:0032301
"MutSalpha complex" evidence=IDA] [GO:0030983 "mismatched DNA
binding" evidence=IDA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IDA] [GO:0032142 "single guanine insertion
binding" evidence=IDA] [GO:0032143 "single thymine insertion
binding" evidence=IDA] [GO:0032357 "oxidized purine DNA binding"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0000287 "magnesium ion binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IDA] [GO:0043531 "ADP binding" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=ISS] [GO:0008340
"determination of adult lifespan" evidence=ISS] [GO:0016447
"somatic recombination of immunoglobulin gene segments"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IDA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0045910
"negative regulation of DNA recombination" evidence=IDA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0003684 GO:GO:0003682 GO:GO:0000790 GO:GO:0045190 MIM:276300
GO:GO:0007131 GO:GO:0000228 InterPro:IPR000313 PROSITE:PS50812
GO:GO:0045910 Orphanet:144 SMART:SM00293 MIM:608089 GO:GO:0008094
GO:GO:0016446 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0051096 PDB:2O8B PDB:2O8C PDB:2O8D PDB:2O8E PDB:2O8F
PDBsum:2O8B PDBsum:2O8C PDBsum:2O8D PDBsum:2O8E PDBsum:2O8F
HOGENOM:HOG000243127 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
CTD:2956 EMBL:U73737 EMBL:U73732 EMBL:U73733 EMBL:U73734
EMBL:U73736 EMBL:D89645 EMBL:D89646 EMBL:AY082894 EMBL:BC004246
EMBL:U54777 EMBL:U28946 IPI:IPI00106847 IPI:IPI00384456 PIR:JC5839
RefSeq:NP_000170.1 UniGene:Hs.445052 PDB:2GFU PDBsum:2GFU
ProteinModelPortal:P52701 SMR:P52701 DIP:DIP-32972N IntAct:P52701
MINT:MINT-131993 STRING:P52701 PhosphoSite:P52701 DMDM:68067672
PaxDb:P52701 PeptideAtlas:P52701 PRIDE:P52701 DNASU:2956
Ensembl:ENST00000234420 GeneID:2956 KEGG:hsa:2956 UCSC:uc002rwc.2
UCSC:uc002rwd.4 GeneCards:GC02P048010 HGNC:HGNC:7329 HPA:CAB009091
HPA:HPA028376 HPA:HPA028446 MIM:600678 MIM:614350
neXtProt:NX_P52701 PharmGKB:PA184 HOVERGEN:HBG000101
InParanoid:P52701 OrthoDB:EOG4CG07F PhylomeDB:P52701
EvolutionaryTrace:P52701 GenomeRNAi:2956 NextBio:11716
PMAP-CutDB:P52701 ArrayExpress:P52701 Bgee:P52701 CleanEx:HS_MSH6
Genevestigator:P52701 GermOnline:ENSG00000116062 Uniprot:P52701
Length = 1360
Score = 238 (88.8 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 66/214 (30%), Positives = 104/214 (48%)
Query: 539 DTFIPNDTRI--DNDGRIN------IITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAA 590
D FIPND I + + + N ++TGPN GKS ++Q L+ ++ +G +VPA+
Sbjct: 1106 DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVC 1165
Query: 591 TVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGI 642
+ D S + + +S+F ++L + +L AT+ SL L+DE G+GT T DG
Sbjct: 1166 RLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGT 1225
Query: 643 GLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDV--E 700
+ + + + L TH L+ + + RL V EN D E
Sbjct: 1226 AIANAVVKELAET-IKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV---ENECEDPSQE 1281
Query: 701 DIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKR 734
I FLY+ + G SYG + A LA +P EVI++
Sbjct: 1282 TITFLYKFIKGACPKSYGFNAARLANLPEEVIQK 1315
Score = 117 (46.2 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 33/123 (26%), Positives = 58/123 (47%)
Query: 153 ESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNK 212
+S S T I + + LDA L+IF G + EG ++ ++
Sbjct: 713 DSDTVSTTRSGAIFTKAYQRMVLDAVTLNNLEIFLN-------GTNGSTEG-TLLERVDT 764
Query: 213 CVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKK 272
C TP G+RLL+ W P+ + +N RL+AI + + ++ + E LK + D+ +L K
Sbjct: 765 CHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSK 824
Query: 273 FNS 275
++
Sbjct: 825 IHN 827
Score = 37 (18.1 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 27/111 (24%), Positives = 50/111 (45%)
Query: 294 SLLHVNKIFEVGISESLRE--QLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKE 351
S L+V + F + +R+ Q++ NFD+V EL Y + +IG+ ++
Sbjct: 394 STLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKVGKFYEL-YHMDALIGVSELGLVFM 452
Query: 352 KGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHL----CKEM 398
KG GF E+ + + L + +VA +E + P + C++M
Sbjct: 453 KG--NWAHSGF-PEI-AFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKM 499
>UNIPROTKB|I3LHZ9 [details] [associations]
symbol:LOC100739477 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 EMBL:FP476043
Ensembl:ENSSSCT00000028757 Uniprot:I3LHZ9
Length = 1334
Score = 242 (90.2 bits), Expect = 3.1e-22, Sum P(2) = 3.1e-22
Identities = 67/214 (31%), Positives = 104/214 (48%)
Query: 539 DTFIPNDTRI-------DNDGRINI-ITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAA 590
D FIPND I +ND + +TGPN GKS ++Q L+ ++ +G +VPA+
Sbjct: 1082 DDFIPNDILIGCEEEEEENDKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVC 1141
Query: 591 TVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGI 642
+ D S + + +S+F ++L + +L AT+ SL L+DE G+GT T DG
Sbjct: 1142 RLTPIDRVFTRLGASDRIMSGESTFFVELSETASILTHATAHSLVLVDELGRGTATFDGT 1201
Query: 643 GLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDV--E 700
+ + ++ + L TH L+ + + RL V EN D E
Sbjct: 1202 AIANAVVKELAE-NIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMV---ENECEDPSQE 1257
Query: 701 DIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKR 734
I FLY+ + G SYG + A LA +P EVI++
Sbjct: 1258 TITFLYKFIKGACPKSYGFNAARLANLPEEVIQK 1291
Score = 109 (43.4 bits), Expect = 3.1e-22, Sum P(2) = 3.1e-22
Identities = 41/159 (25%), Positives = 74/159 (46%)
Query: 126 SEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDS-VIEVS--------LNKFLKLD 176
SE+ + A GG + L+ I L + I +DS V+ S N+ + LD
Sbjct: 652 SELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDVVSASRPGAVFAKANQRMVLD 711
Query: 177 ATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENL 236
A L+IF + S EG ++ ++ C TP G+RLL+ W P+ + +
Sbjct: 712 AVTLNNLEIFLNATNGS-------PEG-TLLEKIDTCHTPFGKRLLKQWLCAPLCNPYAI 763
Query: 237 NSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNS 275
+ RL+AI + + ++ + + LK + D+ +L K ++
Sbjct: 764 SDRLDAIEDLMVVPDKISEVVDLLKKLPDLERLLSKIHN 802
>CGD|CAL0002525 [details] [associations]
symbol:orf19.2579 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0002525 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:AACQ01000044 EMBL:AACQ01000043 KO:K08740
SUPFAM:SSF48334 SUPFAM:SSF53150 RefSeq:XP_718245.1
RefSeq:XP_718341.1 ProteinModelPortal:Q5A989 STRING:Q5A989
GeneID:3639992 GeneID:3640161 KEGG:cal:CaO19.10111
KEGG:cal:CaO19.2579 Uniprot:Q5A989
Length = 803
Score = 293 (108.2 bits), Expect = 3.2e-22, P = 3.2e-22
Identities = 133/568 (23%), Positives = 252/568 (44%)
Query: 200 AKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHET 259
++ G +++ +N C+T MG R+LR L+P ++ R ++ + E+ + S+ +
Sbjct: 209 SETGTTLYSFLNCCLTKMGMRILRTSILQPSTHENSIILRSESVQELINDEDALISIRSS 268
Query: 260 LKYVKDIPHILKKFNSPSFIYTASDWT---AFLKSICSLLHVNKIFEVGISESLREQLR- 315
LK+ D+ + F P + + LK++ V + +S L Q++
Sbjct: 269 LKHTCDLEKVFSTFLEPRGLLSQEQEINNIILLKTVLQNTFVIRKSIQNVSSHLLVQVKQ 328
Query: 316 LLNFDIVEKAASCITTELAYVYELVIGIID-VNRSKEKGY--GTLVREGFCDELDELRQI 372
+L + V+ LA + E + N S E V+ G LD R+I
Sbjct: 329 ILEHENVQHL-------LAIINEYIRNDCQWANNSTELANQRANAVKSGVNGLLDVSRRI 381
Query: 373 YEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFE 432
E L LEEV+ L L E+F+ I + G+ + I K ++T + L E
Sbjct: 382 RETL---LEEVSELVAKLSEEL--EIFMEYRFEISR-GFFIKI---KGNNTDINSLP--E 430
Query: 433 FAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAV 492
+ + + K + T + + + DI +I + I D+ + I ++ LL
Sbjct: 431 VLINRVK-KRKTIECTTIELMKQSSRYNDIVSEITTLNSTIIHDMYTSINSYTPILLMVS 489
Query: 493 NFAAELDCFLSLALVA--HQNNYMRPILTLEPLLDIQNGRHVLQEMTVDTFIPNDTRIDN 550
LD S A +++Y P E + I H + F+ N+ ++
Sbjct: 490 EAIGTLDLLCSFAYFTSLQKDSYTCPEFAKE--VTIMRSLHPILGGNNSNFVANNYSCNH 547
Query: 551 D-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKH--MTAEQ--- 604
+ RI++ITG N SGKS+Y++Q+A +V ++ +G FVPA+ A + + +S + ++++
Sbjct: 548 ELSRIHVITGANMSGKSVYLRQIAYLVIMAQMGCFVPAEYARMRIFNSLYSRISSDNVDI 607
Query: 605 --SSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVL 662
SSF ++ + ++L + SL L+DE G+G+ DG + + + C V+
Sbjct: 608 NASSFSKEMSETAVILNDSDGDSLILIDELGRGSSLTDGFSICLAILEDLI-CK-EATVI 665
Query: 663 VCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPG-HALLSYGLHC 721
TH ++ + KS + + +V E N + Y LV G + ++ YG+
Sbjct: 666 TTTHFRDIA-QVLANKSCVVTAHMQTV---ETNG----QLEMKYNLVLGRNGIVGYGIRF 717
Query: 722 ALLAGV-PAEVIKRAAYVLEAAQNNKHV 748
A ++ + P E+I+ + V ++ K V
Sbjct: 718 AEVSNLLPQELIEDSKVVANILRSRKPV 745
>SGD|S000001891 [details] [associations]
symbol:MSH4 "Protein involved in meiotic recombination"
species:4932 "Saccharomyces cerevisiae" [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0003677 "DNA binding" evidence=IEA;IPI]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0030983 "mismatched
DNA binding" evidence=IEA;IBA] [GO:0051026 "chiasma assembly"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IRD]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0000228 "nuclear
chromosome" evidence=IDA] [GO:0045143 "homologous chromosome
segregation" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000001891 GO:GO:0005524 EMBL:D50617
EMBL:BK006940 GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 GeneTree:ENSGT00550000074897 KO:K08740
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:U13999
PIR:A55201 RefSeq:NP_116652.1 ProteinModelPortal:P40965 SMR:P40965
DIP:DIP-2426N IntAct:P40965 MINT:MINT-565232 STRING:P40965
EnsemblFungi:YFL003C GeneID:850545 KEGG:sce:YFL003C
HOGENOM:HOG000094365 OMA:MSGKSVY OrthoDB:EOG4VHPFT NextBio:966313
Genevestigator:P40965 GermOnline:YFL003C Uniprot:P40965
Length = 878
Score = 218 (81.8 bits), Expect = 6.5e-21, Sum P(3) = 6.5e-21
Identities = 62/220 (28%), Positives = 102/220 (46%)
Query: 459 LGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPIL 518
L ++ +IL + +L+ I L A LD S +NNY PI
Sbjct: 535 LKEVMEEILLLSEETVDELLDKIATHISELFMIAEAVAILDLVCSFTYNLKENNYTIPIF 594
Query: 519 TLEPLLDIQNGRHVLQEMTVDTFIPND-TRIDNDGRINIITGPNYSGKSIYIKQVALIVF 577
T LL I++ RH L E + F+PN + + + IITG N SGKS+Y+KQVALI
Sbjct: 595 T-NNLL-IRDSRHPLLEKVLKNFVPNTISSTKHSSSLQIITGCNMSGKSVYLKQVALICI 652
Query: 578 LSHIGSFVPADAATVGLTDSKH-------MTAEQSSFMIDLHQVGMMLRQATSQSLCLLD 630
++ +GS +PA + + H M S+F ++ ++ L +++L +LD
Sbjct: 653 MAQMGSGIPALYGSFPVFKRLHARVCNDSMELTSSNFGFEMKEMAYFLDDINTETLLILD 712
Query: 631 EFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTEL 670
E G+G+ DG + + + + V + TH ++
Sbjct: 713 ELGRGSSIADGFCVSLAVTEHLLRTEAT--VFLSTHFQDI 750
Score = 116 (45.9 bits), Expect = 6.5e-21, Sum P(3) = 6.5e-21
Identities = 64/267 (23%), Positives = 119/267 (44%)
Query: 140 LENERIVDTLEQKESGNASIT-IDSVIEVS---LNKFLKL----DATAHEALQIFQTDKH 191
L+ E I+D + +A+I+ ++ +I S LN F KL + T + L +T +
Sbjct: 215 LKIEEIIDKTFALCAASAAISYMEEIISKSSRNLNAFRKLRIQFEGTENTMLIDSKTVRG 274
Query: 192 PSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEE 251
+ K G S++ ++ T MG+R LRN L+P+ D ++ RL A+ +++
Sbjct: 275 LELVENKLDKNGISLWKFLDTTSTKMGQRSLRNSILQPLTDRGSIEMRLEALEELKANDD 334
Query: 252 LMASLHETLKYVKDIPHILKKFNSPSFIYTASD----WTAFLK-SICSLLHVNKIFEVGI 306
L+ L +K + D+ + + + D + LK ++ S+ + +
Sbjct: 335 LLQKLRLEMKSLPDLDKLFSRLLCINHSAIKPDQRINYVLLLKETLQSVKSLKDALNDQL 394
Query: 307 SES--LREQLRLLNFDIV---EKAA-SCITTELAYVYELVIGIIDVNRSKEKGYGTLVRE 360
+S + E ++ N D + EK SCI + + I +++ ++ Y V+
Sbjct: 395 IQSRLISETKKIFNNDAIMEIEKLINSCINEDCVWASS-AIQLLN-----QRSYA--VKS 446
Query: 361 GFCDELDELRQIYEELPE-FLEEVASL 386
LD RQIY+E+ E F EV L
Sbjct: 447 DSNGLLDVSRQIYKEVKEEFFREVEDL 473
Score = 46 (21.3 bits), Expect = 6.5e-21, Sum P(3) = 6.5e-21
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 367 DELRQIYEELP--EFLEEVASLELVQLPHLCKEMFVPCIVY--IHQIGYLMCIFEE--KL 420
D R Y + EF ++VA+L V + K+ ++ C I + L + EE L
Sbjct: 486 DSARGFYLRIKRQEFTDDVATLPDVFISRTIKKNYIECTTLNIIKKNARLKEVMEEILLL 545
Query: 421 DDTTLEQL 428
+ T+++L
Sbjct: 546 SEETVDEL 553
Score = 43 (20.2 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 26/102 (25%), Positives = 48/102 (47%)
Query: 368 ELR-QIYEELP--EFLEEVASLELVQLPHLCKEMF--VPCIVYI-----HQIGYLMCIFE 417
E+R + EEL + L + LE+ LP L K +F + CI + +I Y++ + E
Sbjct: 320 EMRLEALEELKANDDLLQKLRLEMKSLPDLDK-LFSRLLCINHSAIKPDQRINYVLLLKE 378
Query: 418 EKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLL 459
+L+ + S + ETK++F + E++ L+
Sbjct: 379 TLQSVKSLKDALNDQLIQSRLISETKKIF-NNDAIMEIEKLI 419
>WB|WBGene00003422 [details] [associations]
symbol:msh-6 species:6239 "Caenorhabditis elegans"
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IMP] [GO:0032301 "MutSalpha complex" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0008630 GO:GO:0003684 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 EMBL:FO081580
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 HSSP:Q56215 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000243127 KO:K08737
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 RefSeq:NP_491163.1
ProteinModelPortal:Q9N3T8 SMR:Q9N3T8 IntAct:Q9N3T8 MINT:MINT-227678
STRING:Q9N3T8 PaxDb:Q9N3T8 EnsemblMetazoa:Y47G6A.11 GeneID:171914
KEGG:cel:CELE_Y47G6A.11 UCSC:Y47G6A.11 CTD:171914
WormBase:Y47G6A.11 InParanoid:Q9N3T8 OMA:RDHIMAG NextBio:873221
Uniprot:Q9N3T8
Length = 1186
Score = 280 (103.6 bits), Expect = 1.6e-20, P = 1.6e-20
Identities = 108/410 (26%), Positives = 181/410 (44%)
Query: 347 NRSKEKGYGTLVREGFCDE-LDE-LRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIV 404
+RS G +V CDE DE L ++ E L E + S V + C FV
Sbjct: 752 DRSTAMKDGKIVPNAGCDEEYDEALNRVKEALNELNDYKDS---VAKKYSCSIKFVDS-- 806
Query: 405 YIHQIGYLMCIFEEKLDDTTLE---QLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGD 461
++ YL+ + E ++ E + +GF +S D E + +E L D
Sbjct: 807 --GKVKYLLEMPENTKVSSSFELKSRRKGF-IRYSTPDSEQLVAALDAVE-KEKSKLGDD 862
Query: 462 IYHKILDM---ERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPIL 518
++ + + I + V + F +L ++ A+ F + + N P L
Sbjct: 863 ATRRVFEQFGHKNPIWLETVKLVSSFD--VLTSLALFAKSSPF-EMCMPEFDFNATDPYL 919
Query: 519 TLE----PLLDIQNGRHVLQEMTVDTFIPNDTRID-NDGRINIITGPNYSGKSIYIKQVA 573
++ P L +Q+ V Q +FI N T + ++ + ++TGPN GKS ++Q A
Sbjct: 920 IVDKGVHPCLALQSRNEVTQ---TTSFIANSTTMGASEAAVMLLTGPNMGGKSTLMRQTA 976
Query: 574 LIVFLSHIGSFVPA--------DAATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQATSQS 625
++ L+HIGS VPA D + + + +S+F I+L + +ML+ AT S
Sbjct: 977 VLAILAHIGSMVPAFSMRLTPIDRIFTRIGANDRIMCGESTFFIELKETDIMLKNATKHS 1036
Query: 626 LCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFY 685
L L+DE G+GT T DG + + ++ D+ + TH + + + RL
Sbjct: 1037 LLLVDELGRGTSTFDGTAIASAVLQK-ISDDLACRTFFSTHYHSICDSFTNHPNVRLAHM 1095
Query: 686 TMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRA 735
V + N +ED+ FLY L G SYG + A LAG+ +V++ A
Sbjct: 1096 KCVVDKENNEDPTMEDVTFLYELESGICPKSYGFYAAKLAGIDHQVVRNA 1145
Score = 245 (91.3 bits), Expect = 9.5e-17, P = 9.5e-17
Identities = 131/497 (26%), Positives = 207/497 (41%)
Query: 127 EVQVRASGGLLAVLENERI-VDTLEQKES---GNASITIDSVIE-VSLN-KFLKLDATAH 180
++ + A G + L + I VD L + + S+ D E + N K L LD TA
Sbjct: 519 QLALSAFGAIFWYLRDSLIDVDMLSMRNVTIYNSNSMENDQKKEKIDWNGKNLILDGTAL 578
Query: 181 EALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRL 240
E L I + SH+ S++ ++NKC TP GRRLLR+W L+P D + L R
Sbjct: 579 ENLNIVPNGRD-SHLT--------SLYYVINKCSTPFGRRLLRSWLLQPTCDPKKLEQRQ 629
Query: 241 NAISFFLCSE--ELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHV 298
AI + + + M + TLK + D+ +L+K ++ Y + +
Sbjct: 630 KAIKWLVSPDASSFMTTATATLKKIPDLDRLLQKIHTIGLKYRSEKHPDSRAIFFDTIKT 689
Query: 299 N--KIFEV--GISE-SLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVN------ 347
N KI E+ I L +LR + ++ C + E + +D N
Sbjct: 690 NQKKIAELLAAIDGFKLCNKLRKEYIKVQKEGEGCELLDELLGNEQEMEEVDENIYFFEK 749
Query: 348 ---RSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASL-ELVQLPHLCKEMFVPCI 403
RS G +V CDE E + + E L E+ + V + C FV
Sbjct: 750 MFDRSTAMKDGKIVPNAGCDE--EYDEALNRVKEALNELNDYKDSVAKKYSCSIKFVDS- 806
Query: 404 VYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIY 463
++ YL+ E ++T + FE S G + Y TP + +L L +
Sbjct: 807 ---GKVKYLL----EMPENTKVSS--SFELK-SRRKGFIR---YSTPDSEQLVAALDAVE 853
Query: 464 HKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNY--MRPILTL- 520
+ + TR + + L+ V + D SLAL A + + P
Sbjct: 854 KEKSKLGDDATRRVFEQFGHKNPIWLETVKLVSSFDVLTSLALFAKSSPFEMCMPEFDFN 913
Query: 521 --EPLLDIQNGRH---VLQ---EMTVDT-FIPNDTRID-NDGRINIITGPNYSGKSIYIK 570
+P L + G H LQ E+T T FI N T + ++ + ++TGPN GKS ++
Sbjct: 914 ATDPYLIVDKGVHPCLALQSRNEVTQTTSFIANSTTMGASEAAVMLLTGPNMGGKSTLMR 973
Query: 571 QVALIVFLSHIGSFVPA 587
Q A++ L+HIGS VPA
Sbjct: 974 QTAVLAILAHIGSMVPA 990
>UNIPROTKB|Q9N3T8 [details] [associations]
symbol:msh-6 "Protein MSH-6" species:6239 "Caenorhabditis
elegans" [GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0008630 GO:GO:0003684 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 EMBL:FO081580
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 HSSP:Q56215 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000243127 KO:K08737
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 RefSeq:NP_491163.1
ProteinModelPortal:Q9N3T8 SMR:Q9N3T8 IntAct:Q9N3T8 MINT:MINT-227678
STRING:Q9N3T8 PaxDb:Q9N3T8 EnsemblMetazoa:Y47G6A.11 GeneID:171914
KEGG:cel:CELE_Y47G6A.11 UCSC:Y47G6A.11 CTD:171914
WormBase:Y47G6A.11 InParanoid:Q9N3T8 OMA:RDHIMAG NextBio:873221
Uniprot:Q9N3T8
Length = 1186
Score = 280 (103.6 bits), Expect = 1.6e-20, P = 1.6e-20
Identities = 108/410 (26%), Positives = 181/410 (44%)
Query: 347 NRSKEKGYGTLVREGFCDE-LDE-LRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIV 404
+RS G +V CDE DE L ++ E L E + S V + C FV
Sbjct: 752 DRSTAMKDGKIVPNAGCDEEYDEALNRVKEALNELNDYKDS---VAKKYSCSIKFVDS-- 806
Query: 405 YIHQIGYLMCIFEEKLDDTTLE---QLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGD 461
++ YL+ + E ++ E + +GF +S D E + +E L D
Sbjct: 807 --GKVKYLLEMPENTKVSSSFELKSRRKGF-IRYSTPDSEQLVAALDAVE-KEKSKLGDD 862
Query: 462 IYHKILDM---ERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPIL 518
++ + + I + V + F +L ++ A+ F + + N P L
Sbjct: 863 ATRRVFEQFGHKNPIWLETVKLVSSFD--VLTSLALFAKSSPF-EMCMPEFDFNATDPYL 919
Query: 519 TLE----PLLDIQNGRHVLQEMTVDTFIPNDTRID-NDGRINIITGPNYSGKSIYIKQVA 573
++ P L +Q+ V Q +FI N T + ++ + ++TGPN GKS ++Q A
Sbjct: 920 IVDKGVHPCLALQSRNEVTQ---TTSFIANSTTMGASEAAVMLLTGPNMGGKSTLMRQTA 976
Query: 574 LIVFLSHIGSFVPA--------DAATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQATSQS 625
++ L+HIGS VPA D + + + +S+F I+L + +ML+ AT S
Sbjct: 977 VLAILAHIGSMVPAFSMRLTPIDRIFTRIGANDRIMCGESTFFIELKETDIMLKNATKHS 1036
Query: 626 LCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFY 685
L L+DE G+GT T DG + + ++ D+ + TH + + + RL
Sbjct: 1037 LLLVDELGRGTSTFDGTAIASAVLQK-ISDDLACRTFFSTHYHSICDSFTNHPNVRLAHM 1095
Query: 686 TMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRA 735
V + N +ED+ FLY L G SYG + A LAG+ +V++ A
Sbjct: 1096 KCVVDKENNEDPTMEDVTFLYELESGICPKSYGFYAAKLAGIDHQVVRNA 1145
Score = 245 (91.3 bits), Expect = 9.5e-17, P = 9.5e-17
Identities = 131/497 (26%), Positives = 207/497 (41%)
Query: 127 EVQVRASGGLLAVLENERI-VDTLEQKES---GNASITIDSVIE-VSLN-KFLKLDATAH 180
++ + A G + L + I VD L + + S+ D E + N K L LD TA
Sbjct: 519 QLALSAFGAIFWYLRDSLIDVDMLSMRNVTIYNSNSMENDQKKEKIDWNGKNLILDGTAL 578
Query: 181 EALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRL 240
E L I + SH+ S++ ++NKC TP GRRLLR+W L+P D + L R
Sbjct: 579 ENLNIVPNGRD-SHLT--------SLYYVINKCSTPFGRRLLRSWLLQPTCDPKKLEQRQ 629
Query: 241 NAISFFLCSE--ELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHV 298
AI + + + M + TLK + D+ +L+K ++ Y + +
Sbjct: 630 KAIKWLVSPDASSFMTTATATLKKIPDLDRLLQKIHTIGLKYRSEKHPDSRAIFFDTIKT 689
Query: 299 N--KIFEV--GISE-SLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVN------ 347
N KI E+ I L +LR + ++ C + E + +D N
Sbjct: 690 NQKKIAELLAAIDGFKLCNKLRKEYIKVQKEGEGCELLDELLGNEQEMEEVDENIYFFEK 749
Query: 348 ---RSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASL-ELVQLPHLCKEMFVPCI 403
RS G +V CDE E + + E L E+ + V + C FV
Sbjct: 750 MFDRSTAMKDGKIVPNAGCDE--EYDEALNRVKEALNELNDYKDSVAKKYSCSIKFVDS- 806
Query: 404 VYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIY 463
++ YL+ E ++T + FE S G + Y TP + +L L +
Sbjct: 807 ---GKVKYLL----EMPENTKVSS--SFELK-SRRKGFIR---YSTPDSEQLVAALDAVE 853
Query: 464 HKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNY--MRPILTL- 520
+ + TR + + L+ V + D SLAL A + + P
Sbjct: 854 KEKSKLGDDATRRVFEQFGHKNPIWLETVKLVSSFDVLTSLALFAKSSPFEMCMPEFDFN 913
Query: 521 --EPLLDIQNGRH---VLQ---EMTVDT-FIPNDTRID-NDGRINIITGPNYSGKSIYIK 570
+P L + G H LQ E+T T FI N T + ++ + ++TGPN GKS ++
Sbjct: 914 ATDPYLIVDKGVHPCLALQSRNEVTQTTSFIANSTTMGASEAAVMLLTGPNMGGKSTLMR 973
Query: 571 QVALIVFLSHIGSFVPA 587
Q A++ L+HIGS VPA
Sbjct: 974 QTAVLAILAHIGSMVPA 990
>UNIPROTKB|Q23AD6 [details] [associations]
symbol:TTHERM_00426230 "MutS domain III family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009411 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0045910 GO:GO:0008094
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 EMBL:GG662724 RefSeq:XP_001013801.1
UniGene:Tth.12031 ProteinModelPortal:Q23AD6
EnsemblProtists:EAR93556 GeneID:7834338 KEGG:tet:TTHERM_00426230
ProtClustDB:CLSZ2445539 Uniprot:Q23AD6
Length = 1139
Score = 174 (66.3 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 54/210 (25%), Positives = 98/210 (46%)
Query: 574 LIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQS 625
LI+ L G +VPA+ L D + +S+F I++ +V + T S
Sbjct: 937 LILQLKQ-GCYVPAEQCEFSLVDRIFTRIGAGDKLIEGKSTFYIEMEEVKNSIMYGTYNS 995
Query: 626 LCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFY 685
+ + DE G+GT T DG+ + G + YF+ + + + TH L+NE L + + FY
Sbjct: 996 IAIFDELGRGTSTFDGVAIAFGILKYFIE-KIQSRCIFATHFFLLINE--LRFYKEISFY 1052
Query: 686 TMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYV-LEAAQN 744
M +N S + ++F Y+L G+A S+G+ A + G+ V+ A LE +
Sbjct: 1053 HMEYYY-DNKS---KKLIFKYKLKQGNAESSFGIDLAKIVGIEQSVLNLAQKKQLEFENS 1108
Query: 745 NKHVERWSHENISAQDQQYKNAVEKMLAFD 774
++ E + I +Q+ + K+ ++
Sbjct: 1109 LEYAEVEKQQTI----KQFNGLISKLFTYE 1134
Score = 141 (54.7 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 97/455 (21%), Positives = 196/455 (43%)
Query: 175 LDATAHEALQIF---QTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPIL 231
LD+ A + L+IF QT + + + K+G ++ ++ TP G+R+L+ W P++
Sbjct: 506 LDSQALQHLEIFENSQTALTTTFQQVDQ-KKG-TLLNYLDYTKTPYGKRMLKKWVCSPLI 563
Query: 232 DLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHIL---------KKFNSPSFIY-- 280
D+ +N R +AI + + + DI + +K + +Y
Sbjct: 564 DISAINDRYDAIEDIQNNLAMKDKFQYGIARYADIERLCSSIYRYSVKQKHAEKAVMYEN 623
Query: 281 -TASDWTAFLKSICSLLHVNKIFEVGI---SESLREQL--RLLNFDIVEKAASCITTELA 334
+++ F I S+ + K+ E E+ + Q RL + + K ++ +L
Sbjct: 624 ISSARLKEFKNLINSMKEIEKLIEETFMVNQENFKSQRLKRLCTYRL--KGDPKLSGDLP 681
Query: 335 YVYELVIGIID--VNRSKEKGYGTLV-----REGFCDELDELRQIYEELPEFLEEVASLE 387
V + + D V SKEK G + ++GFC E D +R + + L++ LE
Sbjct: 682 KVSSFIKVLEDIIVLDSKEKIAGKYIEQPVPKDGFCQEYDSIRLQIKAYQDELDQY--LE 739
Query: 388 LVQLPHLCKEMFVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQG-FEFAFSDMDGETKRLF 446
+++ ++ +++ Y + +++ T +++Q +F+ G +R
Sbjct: 740 QLKVKFKTNDI---SYAFLNNRQY-----DIQVNKTLFDKIQKPADFSLQSHSGSFQR-- 789
Query: 447 YHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICL--FSDHLLKAVNFAAELDCFLSL 504
+ + T E + ++ ++ ++++S+ C+ F D AELDC +S+
Sbjct: 790 FTSRFTSEKVAFIEELEEQL--------KEILSNFCVTVFRD-------IVAELDCLISI 834
Query: 505 --ALVAHQNNYM-RPILTL-----EPLLDIQNGRHV-LQEMTVDTFIPNDTRIDNDGRIN 555
A + M RP++ E ++ GR+ L ++ + +PND + N +N
Sbjct: 835 SHACFTMADGVMCRPVIKFAKNQKETFFYLKQGRNPNLIQLDLKQ-VPNDIILGNIAGMN 893
Query: 556 ------IITGPNYSGKSIYIKQVALIVFLSHIGSF 584
I+TGPN GKS ++ L L+ IG +
Sbjct: 894 AQPNIMILTGPNMGGKSTTLRLFCLSAILAQIGIY 928
>UNIPROTKB|A8JDD7 [details] [associations]
symbol:CHLREDRAFT_121781 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0051026 "chiasma assembly" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IRD] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0032300 "mismatch repair complex" evidence=IRD]
InterPro:IPR000432 Pfam:PF00488 PROSITE:PS00486 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 EMBL:DS496161 RefSeq:XP_001700459.1 STRING:A8JDD7
EnsemblPlants:EDO98148 GeneID:5726009 KEGG:cre:CHLREDRAFT_121781
Uniprot:A8JDD7
Length = 96
Score = 225 (84.3 bits), Expect = 1.5e-17, P = 1.5e-17
Identities = 48/96 (50%), Positives = 63/96 (65%)
Query: 563 SGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD-------SKHMTAEQSSFMIDLHQVG 615
SGKS Y + VALI +L+H+GS+VPA AAT+GL D + + A +FM DL QV
Sbjct: 1 SGKSCYARAVALIAYLAHLGSYVPAQAATIGLADRIAARCATPPLGAATVTFMADLTQVS 60
Query: 616 MMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINY 651
MLR AT ++L +LDEFGKGTL DG+GL + +
Sbjct: 61 AMLRTATERTLLVLDEFGKGTLASDGVGLCAALLTH 96
>UNIPROTKB|B1N483 [details] [associations]
symbol:EHI_019060 "DNA mismatch repair protein mutS,
putative" species:5759 "Entamoeba histolytica" [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 EMBL:DS571351 RefSeq:XP_001913998.1
ProteinModelPortal:B1N483 STRING:B1N483 GeneID:6219997
KEGG:ehi:EHI_019060 EuPathDB:AmoebaDB:EHI_019060 InParanoid:B1N483
Uniprot:B1N483
Length = 225
Score = 223 (83.6 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 62/185 (33%), Positives = 92/185 (49%)
Query: 605 SSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDV-PPKVLV 663
S+F D + LR ++ SL L+DEFGKGT DG+ L T+ Y + PK ++
Sbjct: 36 SAFTTDCSLLSTSLRHLSNDSLLLIDEFGKGTHPSDGLALFIATLRYLQSLGSNAPKTII 95
Query: 664 CTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCAL 723
TH + L K LK M VL ++N++ I FLY LV G + SYG+HCA
Sbjct: 96 STHFISFFHYIDLNKCVPLK---MDVLLNQSNNS----ITFLYHLVNGISDSSYGIHCAR 148
Query: 724 LAGVPAEVIKRAAYVLEAAQNNKHV-ERWSHENISAQDQQYKNAVEKMLAFDVLKGDLRL 782
LA +P+ +I RA+ + + + + SH N+ + Y + + FDV GDL L
Sbjct: 149 LAHLPSSLISRASQIATSLSTSSPILPLSSHLNL---EFYYNSLLSNFSNFDVDNGDLSL 205
Query: 783 FFQDL 787
+
Sbjct: 206 LLNSI 210
>TIGR_CMR|BA_4794 [details] [associations]
symbol:BA_4794 "MutS2 family protein" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
HAMAP:MF_00092 InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF01713
INTERPRO:IPR002625 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003684 GO:GO:0006298 GO:GO:0030983
SMART:SM00463 PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334
HSSP:Q56215 RefSeq:NP_846997.1 RefSeq:YP_021440.1
RefSeq:YP_030694.1 ProteinModelPortal:Q81L40 IntAct:Q81L40
EnsemblBacteria:EBBACT00000011403 EnsemblBacteria:EBBACT00000013814
EnsemblBacteria:EBBACT00000023448 GeneID:1083920 GeneID:2815890
GeneID:2851606 KEGG:ban:BA_4794 KEGG:bar:GBAA_4794 KEGG:bat:BAS4447
eggNOG:COG1193 HOGENOM:HOG000135096 KO:K07456 OMA:HDQSSTG
ProtClustDB:PRK00409 BioCyc:BANT260799:GJAJ-4504-MONOMER
BioCyc:BANT261594:GJ7F-4656-MONOMER PANTHER:PTHR11361:SF14
TIGRFAMs:TIGR01069 Uniprot:Q81L40
Length = 786
Score = 207 (77.9 bits), Expect = 6.6e-13, P = 6.6e-13
Identities = 96/392 (24%), Positives = 167/392 (42%)
Query: 292 ICSLLHVNKIFEVGISE-SLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSK 350
I S+L N++ ++ + R R + D+V+ E +V ++V + D+ +
Sbjct: 80 IGSMLSPNELLDIANTMYGSRNMKRFIE-DMVDNGVELPILE-THVAQIV-SLYDLEKKI 136
Query: 351 EK--GYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQ 408
G G V + D+L +R + E LE + ++M IV I
Sbjct: 137 TNCIGDGGEVVDSASDKLRGIRTQIRTAESRIRE--KLENMTRSSNAQKMLSDSIVTIRN 194
Query: 409 IGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKIL- 467
Y++ + +E + G G+T LF EL+N L + K
Sbjct: 195 ERYVIPVKQE------YRGVYGGIVHDQSASGQT--LFIEPQVIVELNNALQEARVKEKQ 246
Query: 468 DMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQ 527
++ER + L + + +D +L V A LD + A A + +PI+ E +D++
Sbjct: 247 EIERILLM-LTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKPIVNNERYMDLR 305
Query: 528 NGRHVLQEMTVDTFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPA 587
RH L + V +PN+ + D +ITGPN GK++ +K V + V ++ G +P
Sbjct: 306 QARHPLIDPEV--IVPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPV 363
Query: 588 -DAATVGL-----TD-SKHMTAEQSSFMIDLHQVGMM--LRQATSQSLCLLDEFGKGTLT 638
D + + + D + EQS H V ++ L +A +SL L DE G GT
Sbjct: 364 MDESEICVFKNIFADIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDP 423
Query: 639 EDGIGLLGGTINYFVTCDVPPKVLVCTHLTEL 670
++G L ++ C+ +V+ TH EL
Sbjct: 424 QEGAALAISILDE--VCNRGARVVATTHYPEL 453
>UNIPROTKB|Q76DY7 [details] [associations]
symbol:mutS2 "MutS2 protein" species:274 "Thermus
thermophilus" [GO:0000400 "four-way junction DNA binding"
evidence=IDA] [GO:0004519 "endonuclease activity" evidence=IDA]
[GO:0006200 "ATP catabolic process" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IMP] [GO:0030983 "mismatched DNA
binding" evidence=IDA] HAMAP:MF_00092 InterPro:IPR000432
InterPro:IPR003593 InterPro:IPR005747 InterPro:IPR007696
Pfam:PF00488 PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00382
SMART:SM00533 SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625
GO:GO:0005524 GO:GO:0003684 GO:GO:0016887 GO:GO:0006298
GO:GO:0004519 GO:GO:0045910 SMART:SM00463 PROSITE:PS50828
GO:GO:0045005 SUPFAM:SSF48334 GO:GO:0000400 KO:K07456
PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069 EMBL:AB107662
RefSeq:YP_144911.1 ProteinModelPortal:Q76DY7 GeneID:3169358
KEGG:ttj:TTHA1645 Uniprot:Q76DY7
Length = 744
Score = 203 (76.5 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 112/432 (25%), Positives = 178/432 (41%)
Query: 342 GIIDVNRSKEKGYGTLVREGFC-DELD-ELRQIYEELPEFLEEVASLELVQLPHLCKEMF 399
GI D E+ L EG DE L QI EL +++ L L +E F
Sbjct: 112 GIGDHTPFLERVRKALDEEGAVKDEASPRLAQIRRELRPLRQQILD-RLYALMDRHREAF 170
Query: 400 VPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLL 459
V + + Y C+ + +++ G S+ G T LF +L+N L
Sbjct: 171 QDRFVTLRRERY--CV---PVRAGMAQKVPGILLDESE-SGAT--LFIEPFSVVKLNNRL 222
Query: 460 GDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILT 519
+ K + I RDL + + + K + LD + A +A RP
Sbjct: 223 QALRLKEEEEVNRILRDLSERLAK-DEGVPKTLEALGLLDLVQAQAALARDLGLSRP--A 279
Query: 520 LEPLLDIQNGRHVLQEMTVDTFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLS 579
++ H L + + N +D RI +I+GPN GK+ +K + L V ++
Sbjct: 280 FGERYELYRAFHPL----IPDAVRNSFALDEKNRILLISGPNMGGKTALLKTLGLAVLMA 335
Query: 580 HIGSFVPADAATVG--------LTDSKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDE 631
G FV A+ A + + D + + S+F L ++ ML +ATS SL L+DE
Sbjct: 336 QSGLFVAAEKALLAWPDRVYADIGDEQSLQENLSTFAGHLRRLREMLEEATSHSLVLIDE 395
Query: 632 FGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLR 691
G GT E+G L + + V K +V THL+ L + E ++ +M
Sbjct: 396 LGSGTDPEEGAALSQAILEALLERGV--KGMVTTHLSPL--KAFAQGREGIQNASMRF-- 449
Query: 692 PENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVL-EAAQNNKHVER 750
D+E + Y LV G SY L A +P EV+KRA +L E + +ER
Sbjct: 450 ------DLEALRPTYELVLGVPGRSYALAIARRLALPEEVLKRAEALLPEGGRLEALLER 503
Query: 751 WSHENISAQDQQ 762
E ++ + ++
Sbjct: 504 LEAERLALEAER 515
>UNIPROTKB|A3KGN1 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:AL844216 HGNC:HGNC:7328 ChiTaRS:MSH5 SMR:A3KGN1
Ensembl:ENST00000430241 HOGENOM:HOG000172377 Uniprot:A3KGN1
Length = 135
Score = 167 (63.8 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 36/66 (54%), Positives = 44/66 (66%)
Query: 513 YMRPILTLEPL-LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIK 570
Y RP + + L + IQNGRH L E+ TF+PN T D GR+ +ITGPN SGKSIY+K
Sbjct: 2 YSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLK 61
Query: 571 QVALIV 576
QVA V
Sbjct: 62 QVAKAV 67
Score = 127 (49.8 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 38/108 (35%), Positives = 55/108 (50%)
Query: 583 SFVPADAATVGLTDS-KHMTAEQSSFM-IDLHQVGMMLRQATSQSLCLLDEFGKGTLTED 640
+FVP G K +T SS I L QV + AT+QSL L+DEFGKGT T D
Sbjct: 30 TFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQVAKAVNNATAQSLVLIDEFGKGTNTVD 89
Query: 641 GIGLLGGTINYFV----TCDVPPKVLVCTHLTELLNEGCLPKSERLKF 684
G+ LL + +++ TC P + V T+ L+ LP+ +++
Sbjct: 90 GLALLAAVLRHWLARGPTC---PHIFVATNFLSLVQLQLLPQGPLVQY 134
>UNIPROTKB|H0YDS7 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 EMBL:AL662899
EMBL:CR759787 GO:GO:0006298 GO:GO:0030983 EMBL:AL662834
EMBL:CR936239 EMBL:CR759915 EMBL:CR925765 HGNC:HGNC:7328
ChiTaRS:MSH5 Ensembl:ENST00000469938 Ensembl:ENST00000471854
Ensembl:ENST00000484309 Ensembl:ENST00000486024
Ensembl:ENST00000497253 Uniprot:H0YDS7
Length = 166
Score = 167 (63.8 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 36/66 (54%), Positives = 44/66 (66%)
Query: 513 YMRPILTLEPL-LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIK 570
Y RP + + L + IQNGRH L E+ TF+PN T D GR+ +ITGPN SGKSIY+K
Sbjct: 2 YSRPRYSPQVLGVRIQNGRHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLK 61
Query: 571 QVALIV 576
QVA V
Sbjct: 62 QVAKAV 67
Score = 127 (49.8 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 38/108 (35%), Positives = 55/108 (50%)
Query: 583 SFVPADAATVGLTDS-KHMTAEQSSFM-IDLHQVGMMLRQATSQSLCLLDEFGKGTLTED 640
+FVP G K +T SS I L QV + AT+QSL L+DEFGKGT T D
Sbjct: 30 TFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQVAKAVNNATAQSLVLIDEFGKGTNTVD 89
Query: 641 GIGLLGGTINYFV----TCDVPPKVLVCTHLTELLNEGCLPKSERLKF 684
G+ LL + +++ TC P + V T+ L+ LP+ +++
Sbjct: 90 GLALLAAVLRHWLARGPTC---PHIFVATNFLSLVQLQLLPQGPLVQY 134
>UNIPROTKB|Q3ABU1 [details] [associations]
symbol:mutS2 "MutS2 protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
HAMAP:MF_00092 InterPro:IPR000432 InterPro:IPR003593
InterPro:IPR005747 InterPro:IPR007696 Pfam:PF00488
PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00382 SMART:SM00533
SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625 GO:GO:0005524
GO:GO:0003824 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003684
GO:GO:0006281 GO:GO:0006298 GO:GO:0017111 GO:GO:0030983
SMART:SM00463 PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334
HSSP:P23909 eggNOG:COG1193 HOGENOM:HOG000135096 KO:K07456
OMA:HDQSSTG PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:YP_360393.1 ProteinModelPortal:Q3ABU1 STRING:Q3ABU1
GeneID:3727187 KEGG:chy:CHY_1564 PATRIC:21276253
BioCyc:CHYD246194:GJCN-1563-MONOMER Uniprot:Q3ABU1
Length = 777
Score = 186 (70.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 77/312 (24%), Positives = 129/312 (41%)
Query: 440 GETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELD 499
G+T LF E N L + + ++ I +D + + + E+D
Sbjct: 214 GQT--LFIEPYSAVEAGNELKTLELQEKEIIEKILKDFTQRLACNLTEIKRTYELLGEID 271
Query: 500 CFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTVDTFIPNDTRIDNDGRINIITG 559
++ A +A + + +P ++ +L + RH L +P D + + + IITG
Sbjct: 272 LIVAKARLALELDAYKPRISENGVLSFKQARHPLLGKKA---VPFDLTLGKEFDLLIITG 328
Query: 560 PNYSGKSIYIKQVALIVFLSHIGSFVPADAAT-VGLT--------DSKHMTAEQSSFMID 610
PN GK++ +K + ++ ++ G F+PA T +GL D + + S+F
Sbjct: 329 PNTGGKTVTLKTIGILTIMARAGLFIPASPETEIGLFGEVYVDIGDEQSIVQSLSTFSSH 388
Query: 611 LHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTEL 670
L + +L A L LLDE G GT +G L + V KV+ TH +EL
Sbjct: 389 LLNLKFILENAREGDLVLLDELGTGTDPREGAALAKAILEELRGKKV--KVVATTHTSEL 446
Query: 671 LNEGCLPKSERLKFYTMSVLRPENNST--DVEDIVFLYRLVPGHALLSYGLHCALLAGVP 728
Y + R EN S D E + YRL G S L+ A G+
Sbjct: 447 AA------------YAIETERVENASVEFDPESLKPTYRLHIGKPGRSNALYIAQGLGLK 494
Query: 729 AEVIKRAAYVLE 740
++I++A L+
Sbjct: 495 EQIIEKAKSFLK 506
>TIGR_CMR|CHY_1564 [details] [associations]
symbol:CHY_1564 "DNA mismatch repair protein MutS"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] HAMAP:MF_00092 InterPro:IPR000432
InterPro:IPR003593 InterPro:IPR005747 InterPro:IPR007696
Pfam:PF00488 PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00382
SMART:SM00533 SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625
GO:GO:0005524 GO:GO:0003824 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0003684 GO:GO:0006281 GO:GO:0006298 GO:GO:0017111
GO:GO:0030983 SMART:SM00463 PROSITE:PS50828 GO:GO:0045005
SUPFAM:SSF48334 HSSP:P23909 eggNOG:COG1193 HOGENOM:HOG000135096
KO:K07456 OMA:HDQSSTG PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:YP_360393.1 ProteinModelPortal:Q3ABU1 STRING:Q3ABU1
GeneID:3727187 KEGG:chy:CHY_1564 PATRIC:21276253
BioCyc:CHYD246194:GJCN-1563-MONOMER Uniprot:Q3ABU1
Length = 777
Score = 186 (70.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 77/312 (24%), Positives = 129/312 (41%)
Query: 440 GETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELD 499
G+T LF E N L + + ++ I +D + + + E+D
Sbjct: 214 GQT--LFIEPYSAVEAGNELKTLELQEKEIIEKILKDFTQRLACNLTEIKRTYELLGEID 271
Query: 500 CFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTVDTFIPNDTRIDNDGRINIITG 559
++ A +A + + +P ++ +L + RH L +P D + + + IITG
Sbjct: 272 LIVAKARLALELDAYKPRISENGVLSFKQARHPLLGKKA---VPFDLTLGKEFDLLIITG 328
Query: 560 PNYSGKSIYIKQVALIVFLSHIGSFVPADAAT-VGLT--------DSKHMTAEQSSFMID 610
PN GK++ +K + ++ ++ G F+PA T +GL D + + S+F
Sbjct: 329 PNTGGKTVTLKTIGILTIMARAGLFIPASPETEIGLFGEVYVDIGDEQSIVQSLSTFSSH 388
Query: 611 LHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTEL 670
L + +L A L LLDE G GT +G L + V KV+ TH +EL
Sbjct: 389 LLNLKFILENAREGDLVLLDELGTGTDPREGAALAKAILEELRGKKV--KVVATTHTSEL 446
Query: 671 LNEGCLPKSERLKFYTMSVLRPENNST--DVEDIVFLYRLVPGHALLSYGLHCALLAGVP 728
Y + R EN S D E + YRL G S L+ A G+
Sbjct: 447 AA------------YAIETERVENASVEFDPESLKPTYRLHIGKPGRSNALYIAQGLGLK 494
Query: 729 AEVIKRAAYVLE 740
++I++A L+
Sbjct: 495 EQIIEKAKSFLK 506
>UNIPROTKB|A7UVX1 [details] [associations]
symbol:NCU10895 "Putative uncharacterized protein"
species:367110 "Neurospora crassa OR74A" [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 GO:GO:0007131 EMBL:AABX02000002
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
SUPFAM:SSF48334 OrthoDB:EOG4VHPFT RefSeq:XP_001728471.1
ProteinModelPortal:A7UVX1 EnsemblFungi:EFNCRT00000000709
GeneID:5847835 KEGG:ncr:NCU10895 Uniprot:A7UVX1
Length = 625
Score = 184 (69.8 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 46/125 (36%), Positives = 69/125 (55%)
Query: 473 ITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHV 532
+ R L H L D + A+ A LD S A +Y+RP++T + ++ I+ RH
Sbjct: 286 LKRRLQEHSSLMFD-ISDAI---ALLDMLSSFTQAATTQDYVRPMIT-DSMV-IKQARHP 339
Query: 533 LQEMTVDTFIPNDTRI-DNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAAT 591
+ E D ++ ND D GR +ITG N SGKS +I+ VALI ++ +GSFVPA A+
Sbjct: 340 IVEARTDQYVANDVYSGDQSGRFQVITGGNMSGKSTFIRSVALIQIMAQMGSFVPAQFAS 399
Query: 592 VGLTD 596
+ + D
Sbjct: 400 ISICD 404
Score = 45 (20.9 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 9/47 (19%), Positives = 26/47 (55%)
Query: 116 CYLNSMMDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASITID 162
C ++ +Q++A +A ++++R+V L+++ ++S+ D
Sbjct: 256 CQTTELLQRSRAIQLQAD---IATMQSDRLVIELKRRLQEHSSLMFD 299
>TAIR|locus:2087193 [details] [associations]
symbol:MSH1 "AT3G24320" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0006298 "mismatch repair" evidence=ISS] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0032042 "mitochondrial DNA metabolic process"
evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0000002 "mitochondrial genome
maintenance" evidence=IGI;IMP] [GO:0009408 "response to heat"
evidence=IGI] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=RCA] [GO:0006261 "DNA-dependent DNA
replication" evidence=RCA] [GO:0006275 "regulation of DNA
replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0009555 "pollen development" evidence=RCA]
[GO:0016444 "somatic cell DNA recombination" evidence=RCA]
[GO:0016568 "chromatin modification" evidence=RCA] [GO:0016572
"histone phosphorylation" evidence=RCA] [GO:0031047 "gene silencing
by RNA" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0051567 "histone
H3-K9 methylation" evidence=RCA] [GO:0051726 "regulation of cell
cycle" evidence=RCA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 PROSITE:PS00486
SMART:SM00534 InterPro:IPR000305 Pfam:PF01541 GO:GO:0005739
GO:GO:0005524 GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0009411 GO:GO:0003684 GO:GO:0009408 EMBL:AP000382
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 SUPFAM:SSF82771 eggNOG:COG0249 GO:GO:0000400
GO:GO:0032042 GO:GO:0032137 GO:GO:0000710 EMBL:AY191303
IPI:IPI00526404 RefSeq:NP_189075.2 UniGene:At.43463 HSSP:Q56215
ProteinModelPortal:Q84LK0 SMR:Q84LK0 STRING:Q84LK0 PaxDb:Q84LK0
PRIDE:Q84LK0 EnsemblPlants:AT3G24320.1 GeneID:822021
KEGG:ath:AT3G24320 GeneFarm:4139 TAIR:At3g24320
HOGENOM:HOG000264796 InParanoid:Q84LK0 OMA:RGTETAK PhylomeDB:Q84LK0
ProtClustDB:CLSN2680862 Genevestigator:Q84LK0 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 Uniprot:Q84LK0
Length = 1118
Score = 175 (66.7 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 69/241 (28%), Positives = 108/241 (44%)
Query: 556 IITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS--KHMTAE------QSSF 607
++TGPN GKS ++ + L G VPA++A + DS HM + +SSF
Sbjct: 765 LLTGPNGGGKSSLLRSICAAALLGISGLMVPAESACIPHFDSIMLHMKSYDSPVDGKSSF 824
Query: 608 MIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHL 667
+++ ++ ++ QATS+SL L+DE +GT T G + G + T +V THL
Sbjct: 825 QVEMSEIRSIVSQATSRSLVLIDEICRGTETAKGTCIAGSVVESLDTSGCLG--IVSTHL 882
Query: 668 TELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGV 727
+ + LP + K T + EN + ++L G S A GV
Sbjct: 883 HGIFS---LPLTA--KNITYKAMGAENVEGQTKPT---WKLTDGVCRESLAFETAKREGV 934
Query: 728 PAEVIKRA-AYVLEAAQNNKHVERWSHENI---SAQDQQYKNAV--EKMLAFDVLKGDLR 781
P VI+RA A L + E + I S DQQ + V E+ L D+ K ++
Sbjct: 935 PESVIQRAEALYLSVYAKDASAEVVKPDQIITSSNNDQQIQKPVSSERSLEKDLAKAIVK 994
Query: 782 L 782
+
Sbjct: 995 I 995
>UNIPROTKB|A8J8E2 [details] [associations]
symbol:CHLREDRAFT_120228 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 InterPro:IPR015536
PANTHER:PTHR11361:SF31 EMBL:DS496143 RefSeq:XP_001697747.1
EnsemblPlants:EDO99899 GeneID:5723369 KEGG:cre:CHLREDRAFT_120228
ProtClustDB:CLSN2703491 Uniprot:A8J8E2
Length = 86
Score = 144 (55.7 bits), Expect = 7.3e-09, P = 7.3e-09
Identities = 34/86 (39%), Positives = 50/86 (58%)
Query: 558 TGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSK--HMTAE------QSSFMI 609
+GPN GKS ++Q L L+ +G++VPA++ T+ DS M A QS+F I
Sbjct: 1 SGPNMGGKSTLLRQTCLAAILAQVGAWVPAESLTLSPVDSLFVRMGARDSIMTGQSTFFI 60
Query: 610 DLHQVGMMLRQATSQSLCLLDEFGKG 635
+L + ML +AT SL +LDE G+G
Sbjct: 61 ELAETAAMLARATPDSLVVLDELGRG 86
>TIGR_CMR|GSU_0547 [details] [associations]
symbol:GSU_0547 "MutS2 family protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
HAMAP:MF_00092 InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814
SMART:SM00533 SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625
GO:GO:0005524 GO:GO:0003684 GO:GO:0006298 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0030983 SMART:SM00463
PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334 HOGENOM:HOG000135096
KO:K07456 OMA:HDQSSTG PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:NP_951605.1 ProteinModelPortal:Q74FQ9 GeneID:2685958
KEGG:gsu:GSU0547 PATRIC:22023851 ProtClustDB:CLSK827917
BioCyc:GSUL243231:GH27-531-MONOMER Uniprot:Q74FQ9
Length = 792
Score = 178 (67.7 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 87/348 (25%), Positives = 150/348 (43%)
Query: 454 ELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNY 513
EL+NL+ + +++ + R I R + +D L + LD +AL A
Sbjct: 234 ELENLVAEEKAEMIRIVRTICRMIRQE----ADGLDEQFRILVRLDVLNGIALFADSLGA 289
Query: 514 MRPILTLEPLLDIQNGRHVL-----QEMTVDTFIPNDT------RIDND--GRINIITGP 560
P +T + ++ GRH L +E V +P D R D+ ++ +ITGP
Sbjct: 290 ETPEITDARFIRVREGRHPLLALMARERGVGRVVPLDLGLGGAERPDSHVANQVMVITGP 349
Query: 561 NYSGKSIYIKQVALIVFLSHIGSFVPADAAT---------VGLTDSKHMTAEQSSFMIDL 611
N GK+I +K L+ ++ G VPA + + V + D + + S+F +
Sbjct: 350 NAGGKTISLKTTGLLHLMALAGIPVPAASTSSFPLISDLLVDIGDEQSIEQSLSTFSAHV 409
Query: 612 HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPK---VLVCTHLT 668
+ +L +A +++ LLDE G GT E + G I+ V D+ K V+ THLT
Sbjct: 410 SNIAGILERADRRTVVLLDELGTGT--EP---VQGAAISCAVLADLQDKGALVIATTHLT 464
Query: 669 ELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVP 728
+++ G + K + + +M D + + LYRL G S+ L A G+P
Sbjct: 465 DIV--GFVHKRDGMVNASMEF--------DRQTLTPLYRLTVGEPGQSHALEIARRYGLP 514
Query: 729 AEVIKRAAYVLEAAQNNKHV-------ERWSHENISAQDQQYKNAVEK 769
V+ A +L + H +R HE A+ ++ + E+
Sbjct: 515 DRVVAVATGMLSRMETEFHELLAELKDQRRRHEEALAEAERLRRDAEE 562
Score = 37 (18.1 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 24/77 (31%), Positives = 35/77 (45%)
Query: 312 EQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVRE-GFCDELDELR 370
E LR L FD + A S A E + I ++ +E +VR G DE+ LR
Sbjct: 5 ETLRTLEFDKILSAVSGYAHSGATRDETAL-IRPLD-DRE----AIVRRFGQVDEIRRLR 58
Query: 371 QIYEELP-EFLEEVASL 386
Q+ +L E++A L
Sbjct: 59 QLGIDLSLRSFEDIAPL 75
>UNIPROTKB|Q0JBW2 [details] [associations]
symbol:Os04g0507000 "Os04g0507000 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 PROSITE:PS00486
SMART:SM00534 InterPro:IPR000305 Pfam:PF01541 GO:GO:0005739
GO:GO:0005524 GO:GO:0009507 GO:GO:0009411 GO:GO:0003684
EMBL:AP008210 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 SUPFAM:SSF82771 GO:GO:0000400
GO:GO:0032042 GO:GO:0032137 GO:GO:0000710 OMA:RGTETAK GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
RefSeq:NP_001053261.1 UniGene:Os.74427 STRING:Q0JBW2 PRIDE:Q0JBW2
EnsemblPlants:LOC_Os04g42784.1 GeneID:4336345 KEGG:osa:4336345
Gramene:Q0JBW2 ProtClustDB:CLSN2694915 Uniprot:Q0JBW2
Length = 1132
Score = 167 (63.8 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 67/226 (29%), Positives = 103/226 (45%)
Query: 556 IITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS--KHMTAE------QSSF 607
I+TGPN GKS ++ V L G VPA +A + DS HM A +SSF
Sbjct: 762 ILTGPNGGGKSSMLRSVCAAALLGICGLMVPAASAVIPHFDSIMLHMKAYDSPADGKSSF 821
Query: 608 MIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHL 667
I++ ++ ++ +AT++SL L+DE +GT T G + G I +V ++ THL
Sbjct: 822 QIEMSEIRSLVCRATARSLVLIDEICRGTETAKGTCIAGSIIERLD--NVGCIGIISTHL 879
Query: 668 TELLNEGCLPKS-ERLKFYTMSVLRPENNSTDVED--IVFLYRLVPGHALLSYGLHCALL 724
+ + LP S F M T++ D I ++L+ G S A
Sbjct: 880 HGIFD---LPLSLHNTDFKAMG--------TEIIDRCIQPTWKLMDGICRESLAFQTARK 928
Query: 725 AGVPAEVIKRAAYV-LEAAQNNKHVERWSHENISAQDQQYKNAVEK 769
G+P +I+RA + L + N+K H IS + + VEK
Sbjct: 929 EGMPDLIIRRAEELYLAMSTNSKQTSSAVHHEISIANSTVNSLVEK 974
>UNIPROTKB|A2ABF1 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 EMBL:AL662899
EMBL:BX248244 EMBL:CR759787 GO:GO:0006298 GO:GO:0030983
EMBL:AL662834 EMBL:CR936239 EMBL:CR759915 EMBL:CR925765
UniGene:Hs.647011 HGNC:HGNC:7328 ChiTaRS:MSH5 EMBL:BX248133
SMR:A2ABF1 Ensembl:ENST00000412630 Ensembl:ENST00000427687
Ensembl:ENST00000429846 Ensembl:ENST00000447504
Ensembl:ENST00000452856 Ensembl:ENST00000457795 Uniprot:A2ABF1
Length = 156
Score = 108 (43.1 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 622 TSQSLCLLDEFGKGTLTEDGIGLLGGTINYFV----TCDVPPKVLVCTHLTELLNEGCLP 677
T+QSL L+DEFGKGT T DG+ LL + +++ TC P + V T+ L+ LP
Sbjct: 1 TAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTC---PHIFVATNFLSLVQLQLLP 57
Query: 678 KSERLKF 684
+ +++
Sbjct: 58 QGPLVQY 64
Score = 68 (29.0 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 22/88 (25%), Positives = 42/88 (47%)
Query: 706 YRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERWSHENISAQDQQYKN 765
Y + G A S+ H A AG+P +++ R V + ++ K ++ Q + +
Sbjct: 64 YLVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRSGKPIKPVKDLLKKNQMENCQT 123
Query: 766 AVEKMLAFDVLKG--DLRLFF-QDLLPS 790
V+K + D+ DL +F Q++LP+
Sbjct: 124 LVDKFMKLDLEDPNLDLNVFMSQEVLPA 151
>UNIPROTKB|Q0J8X3 [details] [associations]
symbol:Os04g0682900 "Os04g0682900 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 SMART:SM00533
GO:GO:0005524 GO:GO:0003684 EMBL:AP008210 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0008094 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032300 GO:GO:0000404 KO:K08736
RefSeq:NP_001054300.1 UniGene:Os.58403
EnsemblPlants:LOC_Os04g58630.2 GeneID:4337442 KEGG:osa:4337442
Gramene:Q0J8X3 OMA:FIASVDQ Uniprot:Q0J8X3
Length = 813
Score = 150 (57.9 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 81/374 (21%), Positives = 145/374 (38%)
Query: 205 SVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVK 264
S+F MN T G RL R+W P+ D + +R +A+S SE + + + T
Sbjct: 434 SLFQTMNNTCTAFGSRLFRHWLTHPLCDRNQICTRHDAVSEI--SESIGSQQYSTNNLQD 491
Query: 265 DIPHILKKFNSPSFIYTASDWTAFLKSICSLLH-VNKIFE--------VGISESLREQLR 315
++ S L + + +IF VG+ +++ +
Sbjct: 492 EVDMSCSSSVRSDLSTILSSVLRMLAGTLDIQRGITRIFHCKATAKEFVGVVQAILTAGK 551
Query: 316 LLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKE--KGYGTLV---REGFCDELDELR 370
L ++E + + L+ +I+ S TLV + D+ D L
Sbjct: 552 QLQKLVLEDTDTMSSQHRTVHSPLLRRLINTASSCTVLANAATLVSCLNKDAADQGDMLN 611
Query: 371 QIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCIFEEKLDDTTLEQL-- 428
+ +F E V++ E+ + Y Q+G F+ T L +L
Sbjct: 612 LFIASVDQFPEVAEGHATVEMAKQKLELLIT--EYRKQLGVRNLEFKTVAGTTHLIELPV 669
Query: 429 -QGFEFAFSDMDGETKRLFYHTPK-TRELDNLLGDIYHKILDMERAITRDLVSHICLFSD 486
+ ++ ++ K + YHTP+ ++ L+NLL K+ + R + + +
Sbjct: 670 DRKVPSSWMKVNSTKKTIRYHTPEVSKNLENLLL-AKEKLAVICRTTWNNFLMDFGRYYA 728
Query: 487 HLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLE---PLLDIQNGRHVLQEMTVDTFIP 543
V A LDC SLA +A QN Y+RP E + I++GRH + M + +
Sbjct: 729 QFQATVKSLATLDCLYSLATLAKQNKYVRPNFVRENEASQIHIKDGRHPVVNMKIIFYCA 788
Query: 544 NDTRIDNDGRINII 557
DT + GR + +
Sbjct: 789 TDTISNTTGRSHTV 802
>UNIPROTKB|Q0DJI9 [details] [associations]
symbol:Os05g0274200 "Os05g0274200 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000403 "Y-form DNA binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005886 GO:GO:0005524
GO:GO:0003684 EMBL:AP008211 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0008094
GO:GO:0006311 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 KO:K08735 ProtClustDB:CLSN2680872
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 RefSeq:NP_001055070.2
UniGene:Os.18121 STRING:Q0DJI9 EnsemblPlants:LOC_Os05g19270.1
GeneID:4338271 KEGG:osa:4338271 Gramene:Q0DJI9 Uniprot:Q0DJI9
Length = 113
Score = 120 (47.3 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 32/91 (35%), Positives = 51/91 (56%)
Query: 571 QVALIVFLSHIGSFVPADAATVGLTDS--KHMTAEQ------SSFMIDLHQVGMMLRQAT 622
QV + V ++ +GSFVP D A++ + D + A S+FM ++ + +L+ A+
Sbjct: 15 QVGVNVLMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGAS 74
Query: 623 SQSLCLLDEFGKGTLTEDGIG-----LLGGT 648
+SL ++DE G+GT T DG G LLG T
Sbjct: 75 DKSLIIIDELGRGTSTYDGFGWSHAPLLGST 105
>UNIPROTKB|I3LUG7 [details] [associations]
symbol:LOC100624532 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 SMART:SM00533 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR015536 PANTHER:PTHR11361:SF31
GeneTree:ENSGT00550000075024 EMBL:FP700151
Ensembl:ENSSSCT00000028816 OMA:DDNPARG Uniprot:I3LUG7
Length = 1011
Score = 109 (43.4 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 41/159 (25%), Positives = 74/159 (46%)
Query: 126 SEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDS-VIEVS--------LNKFLKLD 176
SE+ + A GG + L+ I L + I +DS V+ S N+ + LD
Sbjct: 527 SELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDVVSASRPGAVFAKANQRMVLD 586
Query: 177 ATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENL 236
A L+IF + S EG ++ ++ C TP G+RLL+ W P+ + +
Sbjct: 587 AVTLNNLEIFLNATNGS-------PEG-TLLEKIDTCHTPFGKRLLKQWLCAPLCNPYAI 638
Query: 237 NSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNS 275
+ RL+AI + + ++ + + LK + D+ +L K ++
Sbjct: 639 SDRLDAIEDLMVVPDKISEVVDLLKKLPDLERLLSKIHN 677
Score = 80 (33.2 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 26/75 (34%), Positives = 37/75 (49%)
Query: 515 RPILTLE-----PLLDIQNGRH--VLQEMTVDTFIPNDTRI-------DNDGRINI-ITG 559
RP++ L P L ++ RH + + D FIPND I +ND + +TG
Sbjct: 926 RPVILLPGEDTPPFLYLKGSRHPCITKTFFGDDFIPNDILIGCEEEEEENDKAYCVLVTG 985
Query: 560 PNYSGKSIYIKQVAL 574
PN GKS ++QV L
Sbjct: 986 PNMGGKSTLMRQVNL 1000
>UNIPROTKB|A3KGN2 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
EMBL:AL844216 HGNC:HGNC:7328 ChiTaRS:MSH5 SMR:A3KGN2
Ensembl:ENST00000445511 Uniprot:A3KGN2
Length = 65
Score = 108 (43.1 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 622 TSQSLCLLDEFGKGTLTEDGIGLLGGTINYFV----TCDVPPKVLVCTHLTELLNEGCLP 677
T+QSL L+DEFGKGT T DG+ LL + +++ TC P + V T+ L+ LP
Sbjct: 1 TAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTC---PHIFVATNFLSLVQLQLLP 57
Query: 678 KSERLKF 684
+ +++
Sbjct: 58 QGPLVQY 64
>UNIPROTKB|A9WD22 [details] [associations]
symbol:Caur_0340 "DNA mismatch repair protein MutS domain
protein" species:324602 "Chloroflexus aurantiacus J-10-fl"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
InterPro:IPR000432 Pfam:PF00488 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0030983 EMBL:CP000909
GenomeReviews:CP000909_GR GO:GO:0008094 eggNOG:COG0249
GO:GO:0032300 RefSeq:YP_001633980.1 GeneID:5827953
KEGG:cau:Caur_0340 PATRIC:21411212 HOGENOM:HOG000020547 OMA:QGGKSTF
ProtClustDB:CLSK865139 BioCyc:CAUR324602:GIXU-343-MONOMER
Uniprot:A9WD22
Length = 505
Score = 129 (50.5 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 46/181 (25%), Positives = 81/181 (44%)
Query: 498 LDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTV-DTFIPNDTRIDNDGRINI 556
L+ + L + + +P+ E L V +T+ + + ND D I I
Sbjct: 272 LNLYEQLTALGKPVTFPQPVPAHERRLSCAELYDVTLALTLGSSVVGNDISADGKSLI-I 330
Query: 557 ITGPNYSGKSIYIKQVALIVFLSHIGSFVPADA----ATVGL-TDSKH---MTAEQSSFM 608
+TGPN GK+++++ V + + G FVPA++ T GL T K T E+ F
Sbjct: 331 VTGPNRGGKTVFLRSVGVAQLMMQCGMFVPAESFLANLTTGLFTHFKREEDKTMERGKFE 390
Query: 609 IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLT 668
+L ++ +++ T +L LL+E T +G + ++ + + KV THL
Sbjct: 391 EELARMSVIVDYLTPNALLLLNESFSATNEREGSEIARQIVSTLIEKGI--KVYFVTHLY 448
Query: 669 E 669
E
Sbjct: 449 E 449
>UNIPROTKB|Q8A4A6 [details] [associations]
symbol:BT_2697 "DNA mismatch repair protein mutS"
species:226186 "Bacteroides thetaiotaomicron VPI-5482" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 EMBL:AE015928 GenomeReviews:AE015928_GR
GO:GO:0008094 SUPFAM:SSF48334 HSSP:Q56215 GO:GO:0032300
HOGENOM:HOG000022931 OMA:ESYFFAE RefSeq:NP_811609.1
ProteinModelPortal:Q8A4A6 GeneID:1072523 KEGG:bth:BT_2697
PATRIC:21060335 ProtClustDB:CLSK823265
BioCyc:BTHE226186:GJXV-2751-MONOMER Uniprot:Q8A4A6
Length = 604
Score = 109 (43.4 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 48/181 (26%), Positives = 84/181 (46%)
Query: 498 LDCFLSLALVAHQN-NYMRPILTLEPL-LDIQNGRHVLQEMTVDTFIPNDTRIDNDGRIN 555
+D + SLA ++ + +Y+ P +T + L + H L M + + N ++
Sbjct: 370 IDAYCSLATFSYNHPDYIYPQITSQSFHLQAEALGHPL--MNRNKCVRNGIDMEKRPFFI 427
Query: 556 IITGPNYSGKSIYIKQVALIVFLSHIGSFV--------PADAATVGLTDSKHMTAEQSSF 607
IITG N +GKS Y++ V + L+ IG+ V PA T L S +T +S F
Sbjct: 428 IITGANMAGKSTYLRTVGVNYLLACIGAPVWAAKMEIFPARLVT-SLRTSDSLTDNESYF 486
Query: 608 MIDLHQVGMMLRQ--ATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCT 665
+L ++ +++ + A + +LDE KGT + D I F++ D ++ T
Sbjct: 487 FAELKRLKLIIDKLKAGEELFIILDEILKGTNSMDKQKGSFALIKQFMSMDA--NGIIAT 544
Query: 666 H 666
H
Sbjct: 545 H 545
Score = 69 (29.3 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 205 SVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAI 243
S+F +N+ TP+G++ L NWF + + E + R AI
Sbjct: 131 SLFQYINRTSTPIGKQRLANWFNAHLEEKEAIEQRQEAI 169
>UNIPROTKB|A8JBH4 [details] [associations]
symbol:CHLREDRAFT_106717 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
EMBL:DS496153 RefSeq:XP_001699298.1 EnsemblPlants:EDO98728
GeneID:5724848 KEGG:cre:CHLREDRAFT_106717 Uniprot:A8JBH4
Length = 111
Score = 102 (41.0 bits), Expect = 0.00022, P = 0.00022
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 578 LSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTL 637
L +G+ + A G D + + +SSF+ ++ +L A +SL LLDE G+GT
Sbjct: 44 LGRLGTAMGGGAGAGGGADD--LESGRSSFLTEMQDAAHVLSAAGPRSLVLLDELGRGTS 101
Query: 638 TEDGIGL 644
T DG+GL
Sbjct: 102 TADGVGL 108
>UNIPROTKB|Q81YJ6 [details] [associations]
symbol:BAS3289 "Putative MutS family protein" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR000432 InterPro:IPR005747 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0045005 SUPFAM:SSF48334
PANTHER:PTHR11361:SF14 RefSeq:NP_845823.1 RefSeq:YP_020182.1
RefSeq:YP_029546.1 ProteinModelPortal:Q81YJ6 DNASU:1084555
EnsemblBacteria:EBBACT00000012461 EnsemblBacteria:EBBACT00000013528
EnsemblBacteria:EBBACT00000020130 GeneID:1084555 GeneID:2814989
GeneID:2849196 KEGG:ban:BA_3547 KEGG:bar:GBAA_3547 KEGG:bat:BAS3289
HOGENOM:HOG000094825 OMA:KMNVREH ProtClustDB:CLSK865470
BioCyc:BANT260799:GJAJ-3351-MONOMER
BioCyc:BANT261594:GJ7F-3461-MONOMER Uniprot:Q81YJ6
Length = 633
Score = 133 (51.9 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 64/262 (24%), Positives = 109/262 (41%)
Query: 487 HLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTVDTFIPNDT 546
H+ + ++ D + A + + + P L + + N +H L V +P +
Sbjct: 261 HIKINMELISQYDMVFAKAKFSKSIDGIEPKLNDHGHIHLVNCKHPLLSGKV---VPLNF 317
Query: 547 RIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAAT---------VGLTDS 597
I + R IITGPN GK+I +K + L+ + G + D T V + D+
Sbjct: 318 EIGQNYRSLIITGPNAGGKTIVLKTIGLLTLATMSGLHIAGDKETEIAIFENVFVDIGDN 377
Query: 598 KHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDV 657
+ + S+F + + ++R + + +L L DE G GT +G L + F
Sbjct: 378 QSIENALSTFSSHMKNLSEIMRMSNNNTLLLFDEIGSGTEPNEGAALAISILEEFYLAGC 437
Query: 658 PPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSY 717
+ TH E+ SE + + + + NS +E LY+LV G + S
Sbjct: 438 I--TVASTHYGEIKRF-----SEMHDDFMNAAM--QFNSETLEP---LYKLVIGKSGESN 485
Query: 718 GLHCALLAGVPAEVIKRA-AYV 738
L A V V+KRA AY+
Sbjct: 486 ALWIANKMNVRERVLKRAKAYM 507
Score = 41 (19.5 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 23/78 (29%), Positives = 32/78 (41%)
Query: 117 YLNSMMDMGS-EVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSV---IEVSLNKF 172
Y NSM + S E ++ S + N +D+ KE IDSV I+ L KF
Sbjct: 119 YANSMTEYKSIEEEINFS-----IKGNS--IDSAASKELKRIRNNIDSVDGKIKERLTKF 171
Query: 173 LKLDATAHEALQIFQTDK 190
L A + F + K
Sbjct: 172 LNSSANKKYIQEFFISKK 189
>TIGR_CMR|BA_3547 [details] [associations]
symbol:BA_3547 "MutS family protein, putative"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0006259 "DNA metabolic
process" evidence=ISS] InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0045005 SUPFAM:SSF48334
PANTHER:PTHR11361:SF14 RefSeq:NP_845823.1 RefSeq:YP_020182.1
RefSeq:YP_029546.1 ProteinModelPortal:Q81YJ6 DNASU:1084555
EnsemblBacteria:EBBACT00000012461 EnsemblBacteria:EBBACT00000013528
EnsemblBacteria:EBBACT00000020130 GeneID:1084555 GeneID:2814989
GeneID:2849196 KEGG:ban:BA_3547 KEGG:bar:GBAA_3547 KEGG:bat:BAS3289
HOGENOM:HOG000094825 OMA:KMNVREH ProtClustDB:CLSK865470
BioCyc:BANT260799:GJAJ-3351-MONOMER
BioCyc:BANT261594:GJ7F-3461-MONOMER Uniprot:Q81YJ6
Length = 633
Score = 133 (51.9 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 64/262 (24%), Positives = 109/262 (41%)
Query: 487 HLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTVDTFIPNDT 546
H+ + ++ D + A + + + P L + + N +H L V +P +
Sbjct: 261 HIKINMELISQYDMVFAKAKFSKSIDGIEPKLNDHGHIHLVNCKHPLLSGKV---VPLNF 317
Query: 547 RIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAAT---------VGLTDS 597
I + R IITGPN GK+I +K + L+ + G + D T V + D+
Sbjct: 318 EIGQNYRSLIITGPNAGGKTIVLKTIGLLTLATMSGLHIAGDKETEIAIFENVFVDIGDN 377
Query: 598 KHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDV 657
+ + S+F + + ++R + + +L L DE G GT +G L + F
Sbjct: 378 QSIENALSTFSSHMKNLSEIMRMSNNNTLLLFDEIGSGTEPNEGAALAISILEEFYLAGC 437
Query: 658 PPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSY 717
+ TH E+ SE + + + + NS +E LY+LV G + S
Sbjct: 438 I--TVASTHYGEIKRF-----SEMHDDFMNAAM--QFNSETLEP---LYKLVIGKSGESN 485
Query: 718 GLHCALLAGVPAEVIKRA-AYV 738
L A V V+KRA AY+
Sbjct: 486 ALWIANKMNVRERVLKRAKAYM 507
Score = 41 (19.5 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 23/78 (29%), Positives = 32/78 (41%)
Query: 117 YLNSMMDMGS-EVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSV---IEVSLNKF 172
Y NSM + S E ++ S + N +D+ KE IDSV I+ L KF
Sbjct: 119 YANSMTEYKSIEEEINFS-----IKGNS--IDSAASKELKRIRNNIDSVDGKIKERLTKF 171
Query: 173 LKLDATAHEALQIFQTDK 190
L A + F + K
Sbjct: 172 LNSSANKKYIQEFFISKK 189
>UNIPROTKB|Q720J7 [details] [associations]
symbol:mutS2 "MutS2 protein" species:265669 "Listeria
monocytogenes serotype 4b str. F2365" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_00092 InterPro:IPR000432
InterPro:IPR005747 InterPro:IPR007696 Pfam:PF00488
PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
Pfam:PF01713 INTERPRO:IPR002625 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AE017262 GenomeReviews:AE017262_GR GO:GO:0030983
SMART:SM00463 PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334
eggNOG:COG1193 HOGENOM:HOG000135096 KO:K07456 OMA:HDQSSTG
ProtClustDB:PRK00409 PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:YP_013840.1 ProteinModelPortal:Q720J7 STRING:Q720J7
GeneID:2799326 KEGG:lmf:LMOf2365_1241 PATRIC:20323712
Uniprot:Q720J7
Length = 785
Score = 121 (47.7 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 75/344 (21%), Positives = 135/344 (39%)
Query: 437 DMDGETKRLFYHTPKTRELDNLLGDIYHKIL-DMERAITRDLVSHICLFSDHLLKAVNFA 495
D + LF +L+N + K ++ER I ++ + + + + +
Sbjct: 215 DQSASGQTLFIEPQSVVDLNNERKALQAKEKQEIER-ILAEISASLAAWINEIHHNTFIL 273
Query: 496 AELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTVDTFIPNDTRIDNDGRIN 555
D + A + P L+ ++ + RH L + + ND + D
Sbjct: 274 GRFDFIFAKARFGKAMKAVTPHLSDAGVVHLIAARHPLLDAA--KVVANDIYLGEDFTTI 331
Query: 556 IITGPNYSGKSIYIKQVALIVFLSHIGSFVPA-DAATVGLTD------SKHMTAEQSSFM 608
+ITGPN GK+I +K + L+ ++ G +PA + +T+ + + + EQS
Sbjct: 332 VITGPNTGGKTITLKTLGLLTLMAQSGLQIPAQEDSTIAVFEHVFADIGDEQSIEQSLST 391
Query: 609 IDLHQVGMM--LRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTH 666
H ++ L +SL L DE G GT ++G L ++ + V+ TH
Sbjct: 392 FSSHMTNIVSILGNVNQKSLILYDELGAGTDPQEGAALAIAILD--ASHAKGASVVATTH 449
Query: 667 LTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAG 726
EL G R+ SV E N VE + Y+L+ G S + G
Sbjct: 450 YPELKAYGY----NRVHATNASV---EFN---VETLSPTYKLLIGVPGRSNAFDISRRLG 499
Query: 727 VPAEVIKRAAYVL--EAAQNNKHVERWSHENISAQDQQYKNAVE 768
+ +I A ++ E+A N + E + + +Y+ A E
Sbjct: 500 LSENIITEARSLVDTESADLNDMISSLE-EKRNLAETEYEEARE 542
Score = 53 (23.7 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 17/81 (20%), Positives = 35/81 (43%)
Query: 117 YLNSMMDMGSEVQVRA--SGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLK 174
++N ++++G E+ + S LL + E E + + ESG T + +
Sbjct: 105 FMNDLLEIGVELPLLGALSDELLVLKEVEEDI-AISVDESGKVLDTASEALSTIRRTLRR 163
Query: 175 LDATAHEALQIFQTDKHPSHM 195
+ E L+ + D++ S M
Sbjct: 164 TEDRVREKLESYLRDRNASKM 184
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.138 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 792 792 0.00096 121 3 11 22 0.50 33
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 177
No. of states in DFA: 624 (66 KB)
Total size of DFA: 391 KB (2192 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 78.44u 0.09s 78.53t Elapsed: 00:00:05
Total cpu time: 78.50u 0.10s 78.60t Elapsed: 00:00:05
Start: Mon May 20 15:26:10 2013 End: Mon May 20 15:26:15 2013
WARNINGS ISSUED: 1