BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043119
(792 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4JEP5|MSH5_ARATH DNA mismatch repair protein MSH5 OS=Arabidopsis thaliana GN=MSH5
PE=2 SV=1
Length = 807
Score = 1285 bits (3325), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 615/796 (77%), Positives = 696/796 (87%), Gaps = 7/796 (0%)
Query: 2 QVYMACILHGHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSE 61
QVYMACI HG RVGVSYYD S+RQLHVLE WE+ SDF LI++VKYQA+P IIY STKSE
Sbjct: 12 QVYMACIQHGRRVGVSYYDCSVRQLHVLEFWEEDCSDFTLINMVKYQAKPSIIYASTKSE 71
Query: 62 ESFLSALKRSDGTTEAPTVKLVKSSIFSYEQAWHRLIYLRVTGMDDGLSIKERICYLNSM 121
ESF++AL+++DGT E VKLVKSS FSYEQAWHRL+YLRVTGMDDGL+IKERICYL+SM
Sbjct: 72 ESFVAALQQNDGTDETTMVKLVKSSTFSYEQAWHRLVYLRVTGMDDGLNIKERICYLSSM 131
Query: 122 MDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAHE 181
MD+GSEVQVR SGGLLA+LE+ERIV+TLEQ ESG+ASI IDSV+EV LNKFLKLDA AHE
Sbjct: 132 MDVGSEVQVRVSGGLLAILESERIVETLEQNESGSASIAIDSVMEVPLNKFLKLDAAAHE 191
Query: 182 ALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLN 241
ALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKC TPMGRRLLR+WF+RPILDLE L+ RLN
Sbjct: 192 ALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCATPMGRRLLRSWFMRPILDLEVLDRRLN 251
Query: 242 AISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKI 301
AISFF+ S ELMASL ETLK VKDI H+LKKFNSP+ + T++DWTAFLKSI +LLHVNKI
Sbjct: 252 AISFFISSVELMASLRETLKSVKDISHLLKKFNSPTSLCTSNDWTAFLKSISALLHVNKI 311
Query: 302 FEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREG 361
FEVG+SESLRE +R N DI+EKA CI+TEL YVYELVIG+IDV RSKE+GY TLV+EG
Sbjct: 312 FEVGVSESLREHMRRFNLDIIEKAGLCISTELDYVYELVIGVIDVTRSKERGYQTLVKEG 371
Query: 362 FCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCIFEEKLD 421
FC ELDELRQIYEELPEFL+EV+++EL PHL KE PCIVYI QIGYLMCIF EKLD
Sbjct: 372 FCAELDELRQIYEELPEFLQEVSAMELEHFPHLHKEKLPPCIVYIQQIGYLMCIFGEKLD 431
Query: 422 DTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHI 481
+T L +L FEFAFSDMDGET+R FYHT KTRELDNLLGDIYHKILDMERAI RDL+SH
Sbjct: 432 ETALNRLTEFEFAFSDMDGETQRFFYHTSKTRELDNLLGDIYHKILDMERAIIRDLLSHT 491
Query: 482 CLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTVDTF 541
LFS HLLKAVNF AELDC LSLA VAHQNNY+RP+LT+E LLDI+NGRHVLQEM VDTF
Sbjct: 492 LLFSAHLLKAVNFVAELDCILSLACVAHQNNYVRPVLTVESLLDIRNGRHVLQEMAVDTF 551
Query: 542 IPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD----- 596
IPNDT I+++GRI+IITGPNYSGKSIY+KQVALIVFLSHIGSFVPADAATVGLTD
Sbjct: 552 IPNDTEINDNGRIHIITGPNYSGKSIYVKQVALIVFLSHIGSFVPADAATVGLTDRIFCA 611
Query: 597 --SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVT 654
SK MTAEQS+FMIDLHQVGMMLRQATS+SLCLLDEFGKGTLTEDGIGLLGGTI++F T
Sbjct: 612 MGSKFMTAEQSTFMIDLHQVGMMLRQATSRSLCLLDEFGKGTLTEDGIGLLGGTISHFAT 671
Query: 655 CDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHAL 714
C PP+V+VCTHLTELLNE CLP SE++KFYTMSVLRP+ S ++E+IVFLYRL+PG L
Sbjct: 672 CAEPPRVVVCTHLTELLNESCLPVSEKIKFYTMSVLRPDTESANMEEIVFLYRLIPGQTL 731
Query: 715 LSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERWSHENISAQDQQYKNAVEKMLAFD 774
LSYGLHCALLAGVP EV+KRAA VL+A ++N +V++ S + IS+QDQ +K+AV+K D
Sbjct: 732 LSYGLHCALLAGVPEEVVKRAAIVLDAFESNNNVDKLSLDKISSQDQAFKDAVDKFAELD 791
Query: 775 VLKGDLRLFFQDLLPS 790
+ KGD+ FFQD+ S
Sbjct: 792 ISKGDIHAFFQDIFTS 807
>sp|O43196|MSH5_HUMAN MutS protein homolog 5 OS=Homo sapiens GN=MSH5 PE=1 SV=1
Length = 834
Score = 358 bits (918), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 261/815 (32%), Positives = 418/815 (51%), Gaps = 62/815 (7%)
Query: 3 VYMACILHGHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSEE 62
+++ + + +G++YYD+S +H + D S L+ V + PQ + TS K +E
Sbjct: 50 IHLCVLWNSGYLGIAYYDTSDSTIHFMPDAPDHES-LKLLQRVLDEINPQSVVTSAKQDE 108
Query: 63 S---FLSALKRSD-GTTEAPTVKLVKSSIFSYEQAWHRLIYLRVTGMDDGLSIKERICYL 118
+ FL L + + P + + S F E + RL+ + + D ++ E+I +L
Sbjct: 109 NMTRFLGKLASQEHREPKRPEIIFLPSVDFGLEISKQRLLSGNYSFIPDAMTATEKILFL 168
Query: 119 NSMMDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDAT 178
+S++ + VRA GGLL L RI LE N S+ I + L + +D
Sbjct: 169 SSIIPFDCLLTVRALGGLLKFLGRRRIGVELEDY---NVSVPILGFKKFMLTHLVNIDQD 225
Query: 179 AHEALQIFQTDKHPSHMGIGRA-KEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLN 237
+ LQIF+++ HPS + KEG S+FG++N+C G +LLR WF RP DL L+
Sbjct: 226 TYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELS 285
Query: 238 SRLNAISFFLCSEEL-MAS-LHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSL 295
SRL+ I FFL + L MA LH L ++K++P ILK+ SDW K++ S
Sbjct: 286 SRLDVIQFFLLPQNLDMAQMLHRLLGHIKNVPLILKRMKLSH--TKVSDWQVLYKTVYSA 343
Query: 296 LHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYG 355
L + SL + ++L DI ++ + +L ++ L+ ++D S +
Sbjct: 344 LGLRDA-----CRSLPQSIQLFR-DIAQE----FSDDLHHIASLIGKVVDFEGSLAENRF 393
Query: 356 TLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPC--IVYIHQIGYLM 413
T V E+DE ++ LP FL EVA EL L + +P ++YI IG+L+
Sbjct: 394 T-VLPNIDPEIDEKKRRLMGLPSFLTEVARKELENL-----DSRIPSCSVIYIPLIGFLL 447
Query: 414 CIFE-EKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERA 472
I + + + ++ G +F F ++L Y + +T+ELD LLGD++ +I D E
Sbjct: 448 SIPRLPSMVEASDFEINGLDFMFL----SEEKLHYRSARTKELDALLGDLHCEIRDQETL 503
Query: 473 ITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPL-LDIQNGRH 531
+ L + + L + ++ A+ LD L+LA A Y RP + + L + IQNGRH
Sbjct: 504 LMYQLQCQVLARAAVLTRVLDLASRLDVLLALASAARDYGYSRPRYSPQVLGVRIQNGRH 563
Query: 532 VLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAA 590
L E+ TF+PN T D GR+ +ITGPN SGKSIY+KQV LI F++ +GSFVPA+ A
Sbjct: 564 PLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEA 623
Query: 591 TVGLTDS--------KHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGI 642
+G D+ + ++ S+FMIDL+QV + AT+QSL L+DEFGKGT T DG+
Sbjct: 624 EIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGL 683
Query: 643 GLLGGTINYFV----TCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTD 698
LL + +++ TC P + V T+ L+ LP+ +++ TM D
Sbjct: 684 ALLAAVLRHWLARGPTC---PHIFVATNFLSLVQLQLLPQGPLVQYLTM------ETCED 734
Query: 699 VEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERWSHENISA 758
D+VF Y++ G A S+ H A AG+P +++ R V + ++ K ++
Sbjct: 735 GNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRSGKPIKPVKDLLKKN 794
Query: 759 QDQQYKNAVEKMLAFDVLKG--DLRLFF-QDLLPS 790
Q + + V+K + D+ DL +F Q++LP+
Sbjct: 795 QMENCQTLVDKFMKLDLEDPNLDLNVFMSQEVLPA 829
>sp|Q9QUM7|MSH5_MOUSE MutS protein homolog 5 OS=Mus musculus GN=Msh5 PE=2 SV=1
Length = 833
Score = 353 bits (907), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 263/819 (32%), Positives = 412/819 (50%), Gaps = 70/819 (8%)
Query: 3 VYMACILHGHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSEE 62
+++ + +G++YYD+S +H + D S L+ V + PQ + TS K +E
Sbjct: 49 IHLCVLWSSGYLGIAYYDTSDSTIHFMPDAPDHES-LKLLQRVLDEINPQSVVTSAKQDE 107
Query: 63 S---FLSALKRSD-GTTEAPTVKLVKSSIFSYEQAWHRLIYLRVTGMDDGLSIKERICYL 118
+ FL L + + P + L+ S F E + RL+ + + D ++ E+I +L
Sbjct: 108 AMTRFLGKLASEEHREPKGPEIILLPSVDFGPEISKQRLLSGNYSFISDSMTATEKILFL 167
Query: 119 NSMMDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDAT 178
+S++ + VRA GGLL L RI LE + G + I + L + +D
Sbjct: 168 SSIIPFDCVLTVRALGGLLKFLSRRRIGVELEDYDVG---VPILGFKKFVLTHLVSIDQD 224
Query: 179 AHEALQIFQTDKHPSHMGIGRA-KEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLN 237
+ LQIF+++ HPS + KEG S+FG++N+C G++LLR WF RP +L LN
Sbjct: 225 TYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCRCKWGQKLLRLWFTRPTRELRELN 284
Query: 238 SRLNAISFFLCSEEL-MAS-LHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSL 295
SRL+ I FFL + L MA LH L ++K++P ILK+ SDW K++ S
Sbjct: 285 SRLDVIQFFLMPQNLDMAQMLHRLLSHIKNVPLILKRMKLSH--TKVSDWQVLYKTVYSA 342
Query: 296 LHVNKIFEVGISESLREQLRLL--NFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKG 353
L LR+ R L + + + A + +L ++ L+ ++D S +
Sbjct: 343 L------------GLRDACRSLPQSIQLFQDIAQEFSDDLHHIASLIGKVVDFEESLAEN 390
Query: 354 YGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPC--IVYIHQIGY 411
T V ++D ++ LP FL EVA EL L + +P ++YI IG+
Sbjct: 391 RFT-VLPNIDPDIDAKKRRLIGLPSFLTEVAQKELENL-----DSRIPSCSVIYIPLIGF 444
Query: 412 LMCI----FEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKIL 467
L+ I F + D +E G +F F D +L Y + +T+ELD LLGD++ +I
Sbjct: 445 LLSIPRLPFMVEASDFEIE---GLDFMFLSED----KLHYRSARTKELDTLLGDLHCEIR 497
Query: 468 DMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLD-- 525
D E + L + + L + ++ A+ LD L+LA A Y RP P +
Sbjct: 498 DQETLLMYQLQCQVLARASVLTRVLDLASRLDVLLALASAARDYGYSRP--HYSPCIHGV 555
Query: 526 -IQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGS 583
I+NGRH L E+ TF+PN T D GR+ +ITGPN SGKSIY+KQV LI F++ +GS
Sbjct: 556 RIRNGRHPLMELCARTFVPNSTDCGGDQGRVKVITGPNSSGKSIYLKQVGLITFMALVGS 615
Query: 584 FVPADAATVGLTDS--------KHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKG 635
FVPA+ A +G+ D+ + ++ S+FMIDL+QV + AT SL L+DEFGKG
Sbjct: 616 FVPAEEAEIGVIDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATEHSLVLIDEFGKG 675
Query: 636 TLTEDGIGLLGGTINYFVTCDVP-PKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPEN 694
T + DG+ LL + +++ P V V T+ L+ LP+ +++ TM
Sbjct: 676 TNSVDGLALLAAVLRHWLALGPSCPHVFVATNFLSLVQLQLLPQGPLVQYLTM------E 729
Query: 695 NSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERWSHE 754
D ED+VF Y+L G A S+ H A AG+P +I R V + ++ K ++ +
Sbjct: 730 TCEDGEDLVFFYQLCQGVASASHASHTAAQAGLPDPLIARGKEVSDLIRSGKPIKATNEL 789
Query: 755 NISAQDQQYKNAVEKMLAFDVLKG--DLRLFF-QDLLPS 790
Q + + V+K L D+ DL +F Q++LP+
Sbjct: 790 LRRNQMENCQALVDKFLKLDLEDPTLDLDIFISQEVLPA 828
>sp|Q6MG62|MSH5_RAT MutS protein homolog 5 OS=Rattus norvegicus GN=Msh5 PE=2 SV=1
Length = 831
Score = 347 bits (890), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 259/817 (31%), Positives = 412/817 (50%), Gaps = 66/817 (8%)
Query: 3 VYMACILHGHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSEE 62
+++ + +G++YYD+S +H + D S L+ V + PQ + TS K +E
Sbjct: 47 IHLCVLWSSGYLGIAYYDTSDSTIHFMPDAPDHES-LKLLQRVLDEINPQSVVTSAKQDE 105
Query: 63 S---FLSALKRSDGT-TEAPTVKLVKSSIFSYEQAWHRLIYLRVTGMDDGLSIKERICYL 118
+ FL L + + P + L+ S F E + RL+ + + + ++ E+I +L
Sbjct: 106 AMTQFLGKLASQEHREPKRPEIILLPSVDFGPEISKQRLLSGNYSFISESMTATEKILFL 165
Query: 119 NSMMDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDAT 178
+S++ + VRA GGLL L R+ LE G + I + L + +D
Sbjct: 166 SSIIPFDCVLTVRALGGLLKFLSRRRVGVELEDYSVG---VPILGFKKFVLTHLVSIDQD 222
Query: 179 AHEALQIFQTDKHPSHMGIGRA-KEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLN 237
+ LQIF+++ HPS + KEG S+FG++N+C G++LLR WF RP +L LN
Sbjct: 223 TYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCRCRWGQKLLRLWFTRPTRELRELN 282
Query: 238 SRLNAISFFLCSEEL-MASL-HETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSL 295
SRL+ I FFL + L MA + H L ++K++P ILK+ SDW K++ S
Sbjct: 283 SRLDVIEFFLMPQNLDMAQMMHRLLSHIKNVPLILKRMKLSH--TKVSDWQVLYKTVYSA 340
Query: 296 LHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYG 355
L + SL + ++L DI ++ + +L ++ L+ ++D S +
Sbjct: 341 LGLRDA-----CRSLPQSIQLFR-DITQE----FSDDLHHIASLIGKVVDFEESLAENRF 390
Query: 356 TLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPC--IVYIHQIGYLM 413
T V E+D ++ LP FL EVA EL L + +P ++YI IG+L+
Sbjct: 391 T-VLPNIDPEIDAKKRRLMGLPSFLTEVAQKELENL-----DSCIPSCSVIYIPLIGFLL 444
Query: 414 CI----FEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDM 469
I F + D +E G +F F D +L Y + +T+ELD LLGD++ +I D
Sbjct: 445 SIPRLSFMVEASDFEIE---GLDFMFLSED----KLHYRSARTKELDALLGDLHCEIRDQ 497
Query: 470 ERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLD---I 526
E + L + + L + ++ A+ LD L+LA A Y RP P + I
Sbjct: 498 EMLLMHQLQCQVLARAPVLTRVLDLASRLDVLLALASAARDYGYSRP--HYSPCIQGVRI 555
Query: 527 QNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFV 585
+NGRH L E+ TF+PN T D GR+ +ITGPN SGKSIY+KQV LI F++ +GSFV
Sbjct: 556 KNGRHPLMELCARTFVPNSTDCGGDQGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFV 615
Query: 586 PADAATVGLTDS--------KHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTL 637
PA+ A +G+ D+ + ++ S+FMIDL+QV + AT SL L+DEFGKGT
Sbjct: 616 PAEEAEIGVIDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATEHSLVLIDEFGKGTN 675
Query: 638 TEDGIGLLGGTINYFVTCDVP-PKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNS 696
+ DG+ LL + +++ P + V T+ L+ LP+ +++ TM
Sbjct: 676 SVDGLALLTAVLRHWLALGPSCPHIFVATNFLSLVQLQLLPQGPLVQYLTM------ETC 729
Query: 697 TDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERWSHENI 756
D D+VF Y+L G A S+ + A AG+P +I R V ++ ++ K V+
Sbjct: 730 EDGNDLVFFYQLCHGVASASHASYTAAQAGLPDPLIARGKEVSDSIRSGKPVKPMHELVR 789
Query: 757 SAQDQQYKNAVEKMLAFDVLKG--DLRLFF-QDLLPS 790
Q + + V+K L D+ DL +F Q++LP+
Sbjct: 790 RTQMENCQALVDKFLKLDLEDPSLDLDIFISQEVLPA 826
>sp|Q19272|MSH5_CAEEL MutS protein homolog 5 OS=Caenorhabditis elegans GN=msh-5 PE=2 SV=2
Length = 1369
Score = 248 bits (633), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 195/675 (28%), Positives = 329/675 (48%), Gaps = 61/675 (9%)
Query: 85 SSIFSYEQAWHRLIYLRVTGMDDGLSIKERICYLNSMMDMGSEVQVRASGGLLAVLENER 144
++ F +A RL + D ++ +++ + D+ + +R+ G LL L+ R
Sbjct: 194 NNFFRMSRAIERLKAM-AGSHDSSMTEEDKYIIIKMRFDIEAVNMIRSFGALLLFLDETR 252
Query: 145 IVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQTD-KHPSHMGIGRAKEG 203
+ T + + + I S+ +L +++D +AL I + ++ G GR
Sbjct: 253 MGVT---DDPLSVTSPIKSIKTFTLGNLVEIDFNTIQALDILPKETENKKTFGQGR---- 305
Query: 204 FSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFL--CSEELMASLHETLK 261
S++ +M+KC + +G++ LR WF P D ++L SR + +F + E+ A L L
Sbjct: 306 -SLYQLMDKCRSTVGKKCLRKWFRNPTTDRDDLVSRQKCVHYFKQDWNAEVTAKLSSILG 364
Query: 262 YVKDIPHILKKFNSPS--FIYTASDWTAFLKSICSLLHV-NKIFEVGISESLREQLRLLN 318
VK + + +KF S + I+ W F+ ++ +L+ + N I + IS+ + LL
Sbjct: 365 RVKALNSVFQKFQSGTAQLIH----WECFVSTVNALVEILNIIRQTPISKEFPVESDLLR 420
Query: 319 FDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPE 378
E++ + + II+ SK +G T V G +ELDE+R YE +P
Sbjct: 421 -------------EVSEIAVIAGSIINFAESKIQGRVT-VMNGIDEELDEIRDTYENMPM 466
Query: 379 FLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDM 438
L +A E +L L V C VYI +G+++ + D +E +S
Sbjct: 467 VLTAIAKQEEARL-GLPPYSNVAC-VYIPLVGFVLSVPR----DYGVESQPDMTLLYSTH 520
Query: 439 DGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAEL 498
+ L T LD+ GDI +++D + AI L + + ++K ++ A+ +
Sbjct: 521 ED----LRVRNATTSRLDDEFGDILMRLIDSQTAIILTLKTRVMKKKRSIIKLLSIASRI 576
Query: 499 DCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTVD-TFIPNDTRIDNDG-RINI 556
D +S L+A QN + P L EP+++ H + + V +F+PN DG + +I
Sbjct: 577 DVLISFGLIAAQNGWNCPALVDEPVIEAVELYHPISVLVVKKSFVPNQVSSGRDGIKASI 636
Query: 557 ITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD---SKHMTAEQ-----SSFM 608
ITGPN GKS+Y+K + ++VFLSHIGSFVPA A +G+ D ++ T + S+F
Sbjct: 637 ITGPNACGKSVYMKSIGIMVFLSHIGSFVPARHAKIGIVDRIVTRMFTVDSVLDGMSTFA 696
Query: 609 IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVT--CDVPPKVLVCTH 666
D+ QV + LR+AT SL ++DEFGKGT+TE G+ LL + Y++ D P + + +H
Sbjct: 697 KDVEQVALALRKATGNSLVIIDEFGKGTMTEVGLSLLASVMTYWMNRGADRCPHIFLSSH 756
Query: 667 LTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAG 726
L N L ++ F T +VLR I +L+R+ PG S+ L A G
Sbjct: 757 FHALPNYIPL-ETNIATFLTFTVLREAGGK-----IKYLFRMTPGLVDCSFALSVAKEEG 810
Query: 727 VPAEVIKRAAYVLEA 741
+P VI RA + +A
Sbjct: 811 IPPPVIGRACRIYKA 825
>sp|Q8RA71|MUTS_THETN DNA mismatch repair protein MutS OS=Thermoanaerobacter
tengcongensis (strain DSM 15242 / JCM 11007 / NBRC
100824 / MB4) GN=mutS PE=3 SV=1
Length = 869
Score = 241 bits (614), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 173/598 (28%), Positives = 300/598 (50%), Gaps = 56/598 (9%)
Query: 170 NKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRP 229
N ++ LD+ A L+I +++++ S G S+ G++++ VTPMG RLL+ W P
Sbjct: 265 NSYMGLDSNAIRNLEILESNRNKSKKG--------SLLGVLDRTVTPMGGRLLKKWLEEP 316
Query: 230 ILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFL 289
++D + + RL+A+ + L E L V D+ + K S T D+ +
Sbjct: 317 LIDKDEIEKRLDAVEELFNNYRERIELKELLNKVYDLERLASKIVYQSV--TPKDFISIK 374
Query: 290 KSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRS 349
S+ +L + I S L+E L+ L VYEL+ I + S
Sbjct: 375 LSLQNLPKIKNILSKFSSRLLKEIYEKLDV-------------LQDVYELIDKSIKDDPS 421
Query: 350 KEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQI 409
+ G ++++G+ + +D+LR+ E + +A+LE + + I Y
Sbjct: 422 NQLKEGNIIKDGYNEMVDKLRKASTEGKNW---IANLEADEREKTGIKNL--RIGYNKVF 476
Query: 410 GYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDM 469
GY + + + + ++ A ++ Y TP+ +E++ + K++++
Sbjct: 477 GYYIEVTKSNIPQVPDRYIRKQTLANAER--------YVTPELKEIEETILGAEEKLIEL 528
Query: 470 ERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNG 529
E + ++ + L + + A +D +S A VA N Y++PI+ E + I+ G
Sbjct: 529 EYELFNEIREKVELQIVRIQNTAKYIAIIDVLISFAEVAETNKYVKPIVDYEDRIVIKEG 588
Query: 530 RH-VLQEMTVDTFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPAD 588
RH V++ ++ + F+ ND I + I IITGPN +GKS Y++QVALIV ++ +G FVPA
Sbjct: 589 RHPVVETISDEGFVANDIDIGPENPIMIITGPNMAGKSTYMRQVALIVLMAQVGCFVPAS 648
Query: 589 AATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTED 640
A +G+ D S + A QS+FM+++ +V +L ATS+SL +LDE G+GT T D
Sbjct: 649 YARIGIVDKIFTRVGASDDIFAGQSTFMVEMSEVANILHSATSKSLIILDEVGRGTSTYD 708
Query: 641 GIGLLGGTINYFVTCDVPPKVLVCTHLTELLN-EGCLPKSERLKFYTMSVLRPENNSTDV 699
G+ + I Y + + K L TH EL EG L ++ + +SV E+
Sbjct: 709 GMSIAQAVIEY-IHEKIKAKTLFATHYHELTKLEGKL---RGVRNFNVSVEERED----- 759
Query: 700 EDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERWSHENIS 757
DI+FL+++VPG + SYG+ + LAG+P +I+RA +LEA + +K V+ E +S
Sbjct: 760 -DIIFLHKIVPGGSDRSYGIQVSKLAGLPYSIIERAKEILEALERDKAVKNELEEAVS 816
>sp|Q895H2|MUTS_CLOTE DNA mismatch repair protein MutS OS=Clostridium tetani (strain
Massachusetts / E88) GN=mutS PE=3 SV=1
Length = 881
Score = 239 bits (609), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 185/631 (29%), Positives = 311/631 (49%), Gaps = 82/631 (12%)
Query: 172 FLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPIL 231
+L +D + L+I +T + S G S+ +++KC T MG RL+RNW +P++
Sbjct: 257 YLSMDINSRRNLEITETIRDKSRKG--------SLLWVLDKCSTAMGARLIRNWVEQPLI 308
Query: 232 DLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKS 291
+ E ++ RLNA+ + + L L + LK + DI I+ K +S + A + + S
Sbjct: 309 NKEKIDKRLNAVEELVLNISLHEDLKDALKDIYDIQRIVGKISSKNV--NAKELLSLKNS 366
Query: 292 ICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKE 351
I L ++ I ++ ++ L L+ EL +YEL+ I N
Sbjct: 367 IEKLPYIKDILSKLEADLFKDMLSNLD-------------ELKDIYELLESSIMDNPPIT 413
Query: 352 KGYGTLVREGFCDELDELRQIYEELPEFLE--EVASLELVQLPHLCKEMFVPCIVYIHQI 409
G L++ GF E+DELR E++ E + E + L + Y
Sbjct: 414 IKDGNLIKNGFNKEIDELRMAKSHGKEWIANLESSEREFTGIKSLK-------VGYNKVF 466
Query: 410 GYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDM 469
GY + ++ + + + + +R Y TP+ +E+++ + K++ +
Sbjct: 467 GYFI-----EVTKSNISSVPEGRYVRKQTLSNCER--YITPELKEMEDKILGAEEKLISL 519
Query: 470 ERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNG 529
E + + + I D + + N A LDC SL+ VA +NNY +P + + I++G
Sbjct: 520 EYEVFVSIRNSIEKDIDRMKISANIVAILDCLSSLSTVALENNYSKPKILEGNDIIIKDG 579
Query: 530 RHVLQEMTVDT--FIPNDTRIDN-DGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVP 586
RH + E + T F+ NDT +D D ++ +ITGPN +GKS Y++QVALI ++ IGSFVP
Sbjct: 580 RHPVVEKMIPTGSFVANDTTMDTEDNQMLLITGPNMAGKSTYMRQVALITIMAQIGSFVP 639
Query: 587 ADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLT 638
A A++ L D S ++A +S+FM+++ +V +L+ ATS+SL +LDE G+GT T
Sbjct: 640 AKEASISLCDKIFTRIGASDDLSAGKSTFMVEMWEVSNILKNATSKSLIILDEVGRGTST 699
Query: 639 EDGIGLLGGTINYFVTC-DVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNST 697
DG+ + I Y ++ K L TH EL+ K + +K Y++SV +
Sbjct: 700 FDGLSIAWAVIEYICNNKNLRSKTLFATHYHELIQ--LENKIKGVKNYSVSVKEMD---- 753
Query: 698 DVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNK----------- 746
+DIVFL +++ G A SYG+ A LAG+P +VI RA +L + + NK
Sbjct: 754 --KDIVFLRKIIEGGADQSYGIEVAKLAGLPEDVIIRAKEILNSIEQNKDNKIELDDIKE 811
Query: 747 ---HVERWSHENISAQDQQYKNAVEKMLAFD 774
H+E+ + + I A +K+LA D
Sbjct: 812 NKNHIEKENKKEI---------ATDKLLAND 833
>sp|Q2S254|MUTS_SALRD DNA mismatch repair protein MutS OS=Salinibacter ruber (strain DSM
13855 / M31) GN=mutS PE=3 SV=1
Length = 908
Score = 238 bits (607), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 218/773 (28%), Positives = 361/773 (46%), Gaps = 119/773 (15%)
Query: 13 RVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSEESFLSALKRSD 72
R+G S+ D++ + V E D L D+++ A ++I K+E +
Sbjct: 148 RIGFSFIDATTGEFSVTEAGLDQ-----LQDLIQTVAPSEVIVDKRKTE-------RLQQ 195
Query: 73 GTTEAP-TVKLVKSSIFSYEQAWHRLI------YLRVTGMDDGLSIKERICYLNSMMDMG 125
E P TV + +F Y+ A+ L+ L+ G+DD MD+G
Sbjct: 196 HLREVPFTVTEQEDWVFKYDFAYQTLLEHFETHSLKGFGVDD--------------MDLG 241
Query: 126 SEVQVRASGGLLAVLENERIVDTLEQKESGNASIT-IDSVIEVSLNKFLKLDATAHEALQ 184
V ASG L L E+ ++ + + S ++ + LD L+
Sbjct: 242 ----VVASGAALHYL-----------GETQKGALPHVRKIKRYSKDEHIALDPETKRNLE 286
Query: 185 IFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAIS 244
+ Q+ + H G ++ ++++ TPMG R LR W +RP+ D+ + RL+A+
Sbjct: 287 LVQSIQDDGHEG--------TLVSILDETETPMGGRRLRAWLVRPLRDVGRIRHRLDAVE 338
Query: 245 FFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEV 304
+ L L E L + D+ + K + D A ++ L +V
Sbjct: 339 ACVDDRTLRDDLREELNQMGDLERLAGKVATGR--AAPGDLIAIKHTLRRLPNV------ 390
Query: 305 GISESLREQLRLLNFDIVEKAASCITTELAYVYELV----IGIIDVNRSKEKGYGTLVRE 360
L LL D A I +L E+V ++D +K G L+R+
Sbjct: 391 ---------LGLLT-DADSDALGAIEDDLRSCPEMVDRIQSALVDDPPAK-ISEGGLIRD 439
Query: 361 GFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCI-VYIHQI-GYLMCIFEE 418
G+ +ELDELR I +E ++ VA+LE + + +P + V +++ GY + +
Sbjct: 440 GYSEELDELRTIAQEGKDW---VANLETEE----SERTDIPSLKVGFNKVFGYYIEVTNT 492
Query: 419 KLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLV 478
D + ++ S+ Y TP+ +E++ + KI +E+ + +L
Sbjct: 493 HADKVPEDYIRKQTLVDSER--------YVTPELKEMEEKILTAEEKIETLEQELFNELR 544
Query: 479 SHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTV 538
S I + L + A LDCF LA VA Q++Y RP + +DI+ GRH + E T+
Sbjct: 545 SQIAQQTGILQENAELLAHLDCFAGLAEVAEQHDYTRPSVDDGLTIDIEEGRHPVVEQTL 604
Query: 539 ---DTFIPNDTRID-NDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGL 594
D FIPND +D +D ++ IITGPN +GKS+ ++QV LIV L+ +GSFVPA+AA +G+
Sbjct: 605 PPGDPFIPNDMALDPDDEQVLIITGPNMAGKSVALRQVGLIVLLAQVGSFVPAEAAQIGV 664
Query: 595 TD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLG 646
D S ++ A +S+F++++++ +L AT++SL L DE G+GT T DG+ +
Sbjct: 665 VDRIFTRVGASDNLAAGESTFLVEMNEAANILNNATARSLILFDEVGRGTSTFDGLSIAW 724
Query: 647 GTINYF-VTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFL 705
+ Y +V + L TH EL + ER+ Y + V E +IVFL
Sbjct: 725 AIVEYLHERPEVAARTLFATHYHEL--NAMADRLERVHNYRIQVSEHEG------EIVFL 776
Query: 706 YRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERWSHENISA 758
+L+PG A SYG+ A +AG+P VI RA VL+ + ++H+E + E A
Sbjct: 777 RKLIPGGADHSYGIEVAKMAGLPDAVIARAREVLQNLE-SQHLEVGADEADGA 828
>sp|A8MFD4|MUTS_ALKOO DNA mismatch repair protein MutS OS=Alkaliphilus oremlandii (strain
OhILAs) GN=mutS PE=3 SV=2
Length = 880
Score = 234 bits (598), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 195/621 (31%), Positives = 314/621 (50%), Gaps = 73/621 (11%)
Query: 175 LDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLE 234
LD + L++ +T + G+ K+G S+ +++K T MG R++R W P+L+++
Sbjct: 274 LDISTRRNLELTETIR-------GKNKKG-SLLWILDKTQTAMGGRMIRKWIEEPLLNIQ 325
Query: 235 NLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICS 294
N+N RL A++ L L E+LK + D+ + K S T D A KS+
Sbjct: 326 NINRRLEAVATLKNDILLRCELKESLKQIYDLERLSGKIAFGS--ATPRDLVALKKSVAF 383
Query: 295 LLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGY 354
L + K+FE S L+E L N D +E + I E + + E I + D
Sbjct: 384 LPDIKKLFENENSGLLKELLN--NIDTLEDIQALI--ESSILDEPSISLKD--------- 430
Query: 355 GTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHL-CKEMFVPCIVYIHQIGYLM 413
G +++EG+ DELDEL Y E +A LE + K + V Y GY +
Sbjct: 431 GGIIKEGYNDELDEL---YVAAREGKHWIAKLEQAEKDRTGIKSLKVG---YNKIFGYYI 484
Query: 414 CIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTREL-DNLLGDIYHKI-LDMER 471
I + L L + +R Y TP+ +EL D +LG I ++ E+
Sbjct: 485 EITKSNL------HLAPENYIRKQTLANCER--YITPELKELEDKILGAEEKSIAIEYEQ 536
Query: 472 AI-TRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGR 530
I R+++ H + + + AELD S A A +NNY++P + +DI+ GR
Sbjct: 537 FIEIRNMLLHEI---ERIQRTARAVAELDVLYSFAEAASENNYVKPTVNSSETIDIKEGR 593
Query: 531 HVLQEMTVDT--FIPNDTRIDN-DGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPA 587
H + E ++ FI NDT I+ D ++ +ITGPN +GKS Y++QVALI+ ++ IGSFVPA
Sbjct: 594 HPVVEKVLENNMFISNDTYINTEDEQLLMITGPNMAGKSTYMRQVALIILMAQIGSFVPA 653
Query: 588 DAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTE 639
+AT+G+TD + ++ QS+FM+++ ++ ++ AT +SL ++DE G+GT T
Sbjct: 654 TSATIGITDRIFTRVGANDDLSQGQSTFMVEMSEMATIVNLATKKSLLIVDEIGRGTSTF 713
Query: 640 DGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSER-LKFYTMSVLRPENNSTD 698
DG+ + T Y + + + L TH EL L ++ R +K Y + V D
Sbjct: 714 DGLSIAWSTAEY-ICQSLGSRTLFSTHYHELTK---LSETYRGIKNYKVLV------KED 763
Query: 699 VEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVL-----EAAQNNKHVERWSH 753
ED++FL+++V G+A SYG+ A LAG+PA +I RA+++L E+ Q +++ +
Sbjct: 764 KEDVIFLHKVVKGNADRSYGIQVAKLAGLPAAIITRASHILSDLERESIQKEQYIIESTA 823
Query: 754 ENISAQDQQYKNAVEKMLAFD 774
EN N EK L D
Sbjct: 824 ENTLTASTDVAN--EKQLKLD 842
>sp|Q187T6|MUTS_CLOD6 DNA mismatch repair protein MutS OS=Clostridium difficile (strain
630) GN=mutS PE=3 SV=2
Length = 947
Score = 230 bits (587), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 181/590 (30%), Positives = 303/590 (51%), Gaps = 57/590 (9%)
Query: 171 KFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPI 230
+++ LD L++ QT + G K+G S+ +++K T MG RLLR + P+
Sbjct: 263 EYMVLDMFTRTNLELTQTIR-------GNKKKG-SLLHVLDKTSTAMGGRLLRKYVEEPL 314
Query: 231 LDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLK 290
++ + +RL+ I L L++ LK + DI I K AF +
Sbjct: 315 INKSKIENRLDVIEEIKDDFILREDLNDILKNIYDIERICGKI-------------AFER 361
Query: 291 -SICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRS 349
+ L+H+ E +L++ + L N I+++ S + +L +Y L+ I +
Sbjct: 362 VTPKELIHLKNSIEK--LPNLKDTINLSNAKILKEYVSEMD-KLDDIYNLIDEAILEEPT 418
Query: 350 KEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQI 409
G +++ F DEL ELR+I + ++E+ + E + K + I +
Sbjct: 419 ITIKDGNIIKSDFSDELKELREISKNGAFLVKEIENREREKTG--VKSL---KIGFNKVF 473
Query: 410 GYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDM 469
GY + I + L++ + S+ + Y TP+ +E++ + KI +
Sbjct: 474 GYYIEITKANFKQAKLDETYIRKQTLSNAER------YITPELKEIEEKILHAEEKIKSL 527
Query: 470 ERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNG 529
E I ++ I D + K A +D F+SLA VAH NNY++P + LDI+NG
Sbjct: 528 EYEIFVEIRDTIYKNIDRIQKVAKTIANIDVFVSLATVAHINNYVKPAINENNKLDIRNG 587
Query: 530 RHVLQEMTV--DTFIPNDTRIDN-DGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVP 586
RH + E V + F+PNDT ++ + INIITGPN SGKS Y++Q A+I ++HIGSFVP
Sbjct: 588 RHPVVENIVGEENFVPNDTYLNRGENIINIITGPNMSGKSTYMRQTAIIALMAHIGSFVP 647
Query: 587 ADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLT 638
A++A + + D S ++ QS+FM+++++V ++L+ AT +SL +LDE G+GT T
Sbjct: 648 AESADIPILDRIFTRVGASDDLSQGQSTFMVEMNEVSLILKNATERSLVILDEIGRGTST 707
Query: 639 EDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTD 698
DGI L + Y + ++ K L TH EL + + + +K Y+++V D
Sbjct: 708 YDGISLAWSIVEY-IQKNIRCKTLFATHYHELTD--LEEEFKEVKNYSIAV------KED 758
Query: 699 VEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHV 748
E I+FL +++P A SYG++ A LA +P EVI+RA Y+L+ + N HV
Sbjct: 759 GEGIIFLRKIIPQGADKSYGIYVAKLAKLPDEVIERAKYILKDLEKN-HV 807
>sp|A5I2S2|MUTS_CLOBH DNA mismatch repair protein MutS OS=Clostridium botulinum (strain
Hall / ATCC 3502 / NCTC 13319 / Type A) GN=mutS PE=3
SV=1
Length = 932
Score = 227 bits (578), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 179/608 (29%), Positives = 295/608 (48%), Gaps = 61/608 (10%)
Query: 160 TIDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGR 219
I+ + S+ +L +D + L+I + + + G S+ ++K T MG
Sbjct: 248 NINKIDYYSIVDYLTIDVNSRRNLEITENLREKTKKG--------SLLWALDKTNTAMGG 299
Query: 220 RLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFI 279
R LR W +P+++ + +RLNA+ L + L L E LK + DI I+ K S S
Sbjct: 300 RQLRRWIEQPLINKNPIENRLNAVEELLNNISLQEDLKEDLKSIYDIERIVGKVASKSV- 358
Query: 280 YTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYEL 339
+ + CS +G ++E L D+ CI T L +++L
Sbjct: 359 ----NAKELISLKCS---------IGKVPYIKEYLSNFKSDLFLNMEQCIDT-LEDIHKL 404
Query: 340 VIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMF 399
+ + N S G +++EGF +E+D LR+ ++ +ASLE + +
Sbjct: 405 LDKALLDNPSLSVKEGNIIKEGFNEEVDSLREAKSNGKKW---IASLEQKEKEETGIKSL 461
Query: 400 VPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLL 459
+ Y GY + I + L+ +G + + Y TP+ +E++ +
Sbjct: 462 K--VSYNKVFGYFIEITKANLNLVP----EGRYIRKQTLSNAER---YITPELKEMEEKI 512
Query: 460 GDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILT 519
K++D+E + ++ I D + K +++DC SLA VA +NNY++P +
Sbjct: 513 LGAEEKLIDIEYKLFTEIRDFIEENIDRMQKTARIISDIDCLCSLATVALENNYIKPNIN 572
Query: 520 LEPLLDIQNGRHVLQEMTVDT--FIPNDTRID-NDGRINIITGPNYSGKSIYIKQVALIV 576
+ + I+ GRH + E + FI ND+ ID + ++ +ITGPN +GKS Y++QVALI
Sbjct: 573 AKDEILIEEGRHPVVEKVIPKGEFISNDSLIDTKENQLILITGPNMAGKSTYMRQVALIT 632
Query: 577 FLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCL 628
++ IGSFVPA A + + D S + A +S+FM+++ +V +L+ ATS+SL L
Sbjct: 633 IMAQIGSFVPAKKANISICDKIFTRIGASDDLAAGKSTFMVEMWEVSNILKNATSKSLVL 692
Query: 629 LDEFGKGTLTEDGIGLLGGTINYFVTC-DVPPKVLVCTHLTELLNEGCLPKSERLKFYTM 687
LDE G+GT T DG+ + I Y ++ K L TH EL E +K Y++
Sbjct: 693 LDEVGRGTSTYDGLSIAWSVIEYICNNKNLRCKTLFATHYHELTK--LEDNIEGVKNYSV 750
Query: 688 SVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKH 747
SV EN +IVFL +++ G A SYG+ A LAG+P+ VI RA +L+ H
Sbjct: 751 SVSELEN------EIVFLRKIIKGGADQSYGIEVAKLAGLPSPVINRAKEILQ------H 798
Query: 748 VERWSHEN 755
+E EN
Sbjct: 799 IEGDKEEN 806
>sp|A7FUL0|MUTS_CLOB1 DNA mismatch repair protein MutS OS=Clostridium botulinum (strain
ATCC 19397 / Type A) GN=mutS PE=3 SV=1
Length = 932
Score = 227 bits (578), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 179/608 (29%), Positives = 295/608 (48%), Gaps = 61/608 (10%)
Query: 160 TIDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGR 219
I+ + S+ +L +D + L+I + + + G S+ ++K T MG
Sbjct: 248 NINKIDYYSIVDYLTIDVNSRRNLEITENLREKTKKG--------SLLWALDKTNTAMGG 299
Query: 220 RLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFI 279
R LR W +P+++ + +RLNA+ L + L L E LK + DI I+ K S S
Sbjct: 300 RQLRRWIEQPLINKNPIENRLNAVEELLNNISLQEDLKEDLKSIYDIERIVGKVASKSV- 358
Query: 280 YTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYEL 339
+ + CS +G ++E L D+ CI T L +++L
Sbjct: 359 ----NAKELISLKCS---------IGKVPYIKEYLSNFKSDLFLNMEQCIDT-LEDIHKL 404
Query: 340 VIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMF 399
+ + N S G +++EGF +E+D LR+ ++ +ASLE + +
Sbjct: 405 LDKALLDNPSLSVKEGNIIKEGFNEEVDSLREAKSNGKKW---IASLEQKEKEETGIKSL 461
Query: 400 VPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLL 459
+ Y GY + I + L+ +G + + Y TP+ +E++ +
Sbjct: 462 K--VSYNKVFGYFIEITKANLNLVP----EGRYIRKQTLSNAER---YITPELKEMEEKI 512
Query: 460 GDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILT 519
K++D+E + ++ I D + K +++DC SLA VA +NNY++P +
Sbjct: 513 LGAEEKLIDIEYKLFTEIRDFIEENIDRMQKTARIISDIDCLCSLATVALENNYIKPNIN 572
Query: 520 LEPLLDIQNGRHVLQEMTVDT--FIPNDTRID-NDGRINIITGPNYSGKSIYIKQVALIV 576
+ + I+ GRH + E + FI ND+ ID + ++ +ITGPN +GKS Y++QVALI
Sbjct: 573 AKDEILIEEGRHPVVEKVIPKGEFISNDSLIDTKENQLILITGPNMAGKSTYMRQVALIT 632
Query: 577 FLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCL 628
++ IGSFVPA A + + D S + A +S+FM+++ +V +L+ ATS+SL L
Sbjct: 633 IMAQIGSFVPAKKANISICDKIFTRIGASDDLAAGKSTFMVEMWEVSNILKNATSKSLVL 692
Query: 629 LDEFGKGTLTEDGIGLLGGTINYFVTC-DVPPKVLVCTHLTELLNEGCLPKSERLKFYTM 687
LDE G+GT T DG+ + I Y ++ K L TH EL E +K Y++
Sbjct: 693 LDEVGRGTSTYDGLSIAWSVIEYICNNKNLRCKTLFATHYHELTK--LEDNIEGVKNYSV 750
Query: 688 SVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKH 747
SV EN +IVFL +++ G A SYG+ A LAG+P+ VI RA +L+ H
Sbjct: 751 SVSELEN------EIVFLRKIIKGGADQSYGIEVAKLAGLPSPVINRAKEILQ------H 798
Query: 748 VERWSHEN 755
+E EN
Sbjct: 799 IEGDKEEN 806
>sp|Q97I19|MUTS_CLOAB DNA mismatch repair protein MutS OS=Clostridium acetobutylicum
(strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM
B-1787) GN=mutS PE=3 SV=1
Length = 869
Score = 226 bits (576), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 182/600 (30%), Positives = 294/600 (49%), Gaps = 59/600 (9%)
Query: 161 IDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRR 220
ID + + + FL +D + L++ +T K S G S+ +++K T MG R
Sbjct: 248 IDELQKYEIVDFLSIDINSRRNLELTETLKDKSKKG--------SLLWVLDKTSTAMGGR 299
Query: 221 LLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIY 280
+R W RP++D E +N RL+A+ L + L E LK V DI + K +S S
Sbjct: 300 QIRKWIERPLIDDEKINLRLDAVEEMLTNVSYNEDLKELLKQVYDIERLAGKISSKSV-- 357
Query: 281 TASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELV 340
A + + SI L + K+ + SE L L+ +L +Y+L+
Sbjct: 358 NAKEMISLRGSIEKLPAIKKLIKNFNSELLVNMENALD-------------DLGDIYKLL 404
Query: 341 IGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHL-CKEMF 399
I+ N S G +++EG+ ++DELR ++ +ASLE + K +
Sbjct: 405 YESINDNPSLSIKEGNIIKEGYNKDIDELRLAKSHGKQW---IASLENTEREVTGIKSLK 461
Query: 400 VPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLL 459
V Y GY + I + L+ E + T Y TP+ +E++ +
Sbjct: 462 VS---YNKVFGYYIEITKSNLNLVP-------EGRYIRKQTLTNSERYITPELKEMEEKI 511
Query: 460 GDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILT 519
K++ +E + ++ I D + + +ELDC S A VA +NNY +P++
Sbjct: 512 LGAEEKLVLLEYNVFCEIRERIEKEIDRIKGSAKILSELDCICSFADVARENNYCKPVIK 571
Query: 520 LEPLLDIQNGRHVLQEMTVDT--FIPNDTRIDN-DGRINIITGPNYSGKSIYIKQVALIV 576
+ L I+ GRH + E + + F+ NDT I+N D + +ITGPN +GKS Y++QV LIV
Sbjct: 572 RDGTLVIKEGRHPVVEKVIASGNFVANDTVINNSDNVMMLITGPNMAGKSTYMRQVGLIV 631
Query: 577 FLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCL 628
++ IG FVPA AA + + D S + A +S+FM+++ +V +L+ AT SL L
Sbjct: 632 LMAQIGCFVPASAAEISICDKIFTRIGASDDLNAGKSTFMVEMWEVSHILKNATKNSLIL 691
Query: 629 LDEFGKGTLTEDGIGLLGGTINYFVTC-DVPPKVLVCTHLTELLN-EGCLPKSERLKFYT 686
LDE G+GT T DG+ + I Y ++ K L TH EL EG + E LK Y+
Sbjct: 692 LDEVGRGTSTYDGLSIAWSVIEYICKSENLKCKTLFATHYHELTKLEGEI---EGLKNYS 748
Query: 687 MSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNK 746
++V + + DI+FL +++ A SYG+ A +AG+P EV+ RA +L+ + K
Sbjct: 749 IAVKKVND------DIIFLRKIISKGADESYGIEVAKIAGLPEEVLVRAREILKDLEEAK 802
>sp|C1FNT9|MUTS_CLOBJ DNA mismatch repair protein MutS OS=Clostridium botulinum (strain
Kyoto / Type A2) GN=mutS PE=3 SV=1
Length = 932
Score = 225 bits (574), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 181/608 (29%), Positives = 298/608 (49%), Gaps = 61/608 (10%)
Query: 160 TIDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGR 219
I+ + S+ +L +D + L+I + + + G S+ +++K T MG
Sbjct: 248 NINKIDYYSIVDYLTIDVNSRRNLEITENLREKTKKG--------SLLWVLDKTNTAMGG 299
Query: 220 RLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFI 279
R LR W +P+++ + +RLNA+ L + L L E LK + DI I+ K S S
Sbjct: 300 RQLRRWIEQPLINKNPIENRLNAVEELLNNISLQEDLKEDLKSIYDIERIVGKVASKSV- 358
Query: 280 YTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYEL 339
A + + SI + ++ K G L LN + CI T L +++L
Sbjct: 359 -NAKELISLKCSIGKVPYIKKYLS-GFKSDL-----FLNME------QCIDT-LEDIHKL 404
Query: 340 VIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMF 399
+ + N S G +++EGF +E+D LR+ ++ +ASLE + +
Sbjct: 405 LDKALLDNPSLSVKEGNIIKEGFNEEVDSLREAKSNGKKW---IASLEQKEKEETGIKSL 461
Query: 400 VPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLL 459
+ Y GY + I + L+ +G + + Y TP+ +E++ +
Sbjct: 462 K--VSYNKVFGYFIEITKANLNLVP----EGRYIRKQTLSNAER---YITPELKEMEEKI 512
Query: 460 GDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILT 519
K++D+E + ++ I D + K +++DC SLA VA +NNY++P +
Sbjct: 513 LGAEEKLIDIEYKLFTEIRDFIEENIDRMQKTARIISDIDCLCSLATVALENNYIKPNIN 572
Query: 520 LEPLLDIQNGRHVLQEMTVDT--FIPNDTRID-NDGRINIITGPNYSGKSIYIKQVALIV 576
+ + I+ GRH + E + FI ND+ ID + ++ +ITGPN +GKS Y++QVALI
Sbjct: 573 AKDEILIEEGRHPVVEKVIPKGEFISNDSLIDTKENQLILITGPNMAGKSTYMRQVALIT 632
Query: 577 FLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCL 628
++ IGSFVPA A + + D S + A +S+FM+++ +V +L+ ATS+SL L
Sbjct: 633 IMAQIGSFVPAKKANISICDKIFTRIGASDDLAAGKSTFMVEMWEVSNILKNATSKSLVL 692
Query: 629 LDEFGKGTLTEDGIGLLGGTINYFVTC-DVPPKVLVCTHLTELLNEGCLPKSERLKFYTM 687
LDE G+GT T DG+ + I Y ++ K L TH EL E +K Y++
Sbjct: 693 LDEVGRGTSTYDGLSIAWSVIEYICNNKNLRCKTLFATHYHELTK--LEDNIEGVKNYSV 750
Query: 688 SVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKH 747
SV EN +IVFL +++ G A SYG+ A LAG+P+ VI RA +L+ H
Sbjct: 751 SVSELEN------EIVFLRKIIRGGADQSYGIEVAKLAGLPSPVINRAKEILQ------H 798
Query: 748 VERWSHEN 755
+E EN
Sbjct: 799 IEGDKEEN 806
>sp|A9KL10|MUTS_CLOPH DNA mismatch repair protein MutS OS=Clostridium phytofermentans
(strain ATCC 700394 / DSM 18823 / ISDg) GN=mutS PE=3
SV=1
Length = 932
Score = 225 bits (574), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 180/642 (28%), Positives = 310/642 (48%), Gaps = 74/642 (11%)
Query: 128 VQVRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQ 187
V V A+G +L L N + N+ + + ++++ +D+++ L++ +
Sbjct: 232 VGVNAAGAILKYLYNTQ----------KNSLSHLTHITPYVTSRYMVIDSSSRRNLELTE 281
Query: 188 TDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFL 247
T + G S+ +++K T MG R+LR++ +P++ ++ +++R +AIS
Sbjct: 282 TLREKQKRG--------SLLWVLDKTKTAMGARMLRSFVEQPLITMDEISARYDAISELN 333
Query: 248 CSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIF---EV 304
+ + E L Y+ D+ ++ K + S D AF S+ L H+ + E
Sbjct: 334 DNVITREEIREYLNYIYDLERLMGKISYKSA--NPRDLIAFASSLSMLPHIKYLLSTCES 391
Query: 305 GISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCD 364
+ + + E++ D ++ + I +A E IGI + G +++EGF
Sbjct: 392 ALLKQIHEEM-----DALDDLQNLIDRSIAE--EPPIGIKE---------GGIIKEGFHT 435
Query: 365 ELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCIFEEKLDDTT 424
E+D LR+ E +L E+ + E Q K + V Y GY + + +
Sbjct: 436 EVDTLRKAKTEGKVWLAELEAKEKEQTG--IKNLKVK---YNRVFGYYLEVTNSYANLVP 490
Query: 425 LEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLF 484
++ + ++ Y TP+ +EL++ + + ++ +E + ++ I
Sbjct: 491 ENWIRKQTLSNAER--------YTTPELKELEDKILNAEDRLFSLEYDLFAEIRDQIAEE 542
Query: 485 SDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTV--DTFI 542
+ K A +D F SLA VA +N ++RP L +DI+ GRH + E + D F+
Sbjct: 543 VKRIQKTAKAVANIDAFASLAYVAERNQFIRPELNTNGTIDIKEGRHPVVEQMIPNDMFV 602
Query: 543 PNDTRIDN-DGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD----- 596
NDT +DN + RI+IITGPN +GKS Y++Q ALIV ++ +GSFVPA A +G+ D
Sbjct: 603 SNDTYLDNAEKRISIITGPNMAGKSTYMRQTALIVLMAQVGSFVPASYANIGIVDRIFTR 662
Query: 597 ---SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFV 653
S + + QS+FM+++ +V +LR AT SL +LDE G+GT T DG+ + I +
Sbjct: 663 VGASDDLASGQSTFMVEMTEVANILRNATKNSLLILDEIGRGTSTFDGLSIAWAVIEHIS 722
Query: 654 -TCDVPPKVLVCTHLTELLN-EGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPG 711
T + K L TH EL EG K + Y ++V EDIVFL +++ G
Sbjct: 723 NTSMLGAKTLFATHYHELTELEG---KISGVNNYCIAV------KEQGEDIVFLRKIIGG 773
Query: 712 HALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERWSH 753
A SYG+ A LAGVP V+ RA +++ N E+ H
Sbjct: 774 GADKSYGIQVAKLAGVPNSVLVRAREIVDQLSENDIAEKARH 815
>sp|A7GE45|MUTS_CLOBL DNA mismatch repair protein MutS OS=Clostridium botulinum (strain
Langeland / NCTC 10281 / Type F) GN=mutS PE=3 SV=1
Length = 932
Score = 225 bits (574), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 181/608 (29%), Positives = 298/608 (49%), Gaps = 61/608 (10%)
Query: 160 TIDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGR 219
I+ + S+ +L +D + L+I + + + G S+ +++K T MG
Sbjct: 248 NINKIDYYSIVDYLTIDVNSRRNLEITENLREKTKKG--------SLLWVLDKTNTAMGG 299
Query: 220 RLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFI 279
R LR W +P+++ + +RLNA+ L + L L E LK + DI I+ K S S
Sbjct: 300 RQLRRWIEQPLINKNPIENRLNAVEELLNNISLQEDLKEDLKSIYDIERIVGKVASKSV- 358
Query: 280 YTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYEL 339
A + + SI + ++ K G L LN + CI T L +++L
Sbjct: 359 -NAKELISLKCSIGKVPYIKKYLS-GFKSDL-----FLNME------QCIDT-LEDIHKL 404
Query: 340 VIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMF 399
+ + N S G +++EGF +E+D LR+ ++ +ASLE + +
Sbjct: 405 LDKALLDNPSLSVKEGNIIKEGFNEEVDSLREAKSNGKKW---IASLEQKEKEETGIKSL 461
Query: 400 VPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLL 459
+ Y GY + I + L+ +G + + Y TP+ +E++ +
Sbjct: 462 K--VSYNKVFGYFIEITKANLNLVP----EGRYIRKQTLSNAER---YITPELKEMEEKI 512
Query: 460 GDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILT 519
K++D+E + ++ I D + K +++DC SLA VA +NNY++P +
Sbjct: 513 LGAEEKLIDIEYKLFTEIRDFIEENIDRMQKTARIISDIDCLCSLATVALENNYIKPNIN 572
Query: 520 LEPLLDIQNGRHVLQEMTVDT--FIPNDTRID-NDGRINIITGPNYSGKSIYIKQVALIV 576
+ + I+ GRH + E + FI ND+ ID + ++ +ITGPN +GKS Y++QVALI
Sbjct: 573 AKDEILIEEGRHPVVEKVIPKGEFISNDSLIDTKENQLILITGPNMAGKSTYMRQVALIT 632
Query: 577 FLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCL 628
++ IGSFVPA A + + D S + A +S+FM+++ +V +L+ ATS+SL L
Sbjct: 633 IMAQIGSFVPAKKANISICDKIFTRIGASDDLAAGKSTFMVEMWEVSNILKNATSKSLVL 692
Query: 629 LDEFGKGTLTEDGIGLLGGTINYFVTC-DVPPKVLVCTHLTELLNEGCLPKSERLKFYTM 687
LDE G+GT T DG+ + I Y ++ K L TH EL E +K Y++
Sbjct: 693 LDEVGRGTSTYDGLSIAWSVIEYICNNKNLRCKTLFATHYHELTK--LEDNIEGVKNYSV 750
Query: 688 SVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKH 747
SV EN +IVFL +++ G A SYG+ A LAG+P+ VI RA +L+ H
Sbjct: 751 SVSELEN------EIVFLRKIIRGGADQSYGIEVAKLAGLPSPVINRAKEILQ------H 798
Query: 748 VERWSHEN 755
+E EN
Sbjct: 799 IEGDKEEN 806
>sp|C3KX35|MUTS_CLOB6 DNA mismatch repair protein MutS OS=Clostridium botulinum (strain
657 / Type Ba4) GN=mutS PE=3 SV=1
Length = 932
Score = 225 bits (573), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 181/608 (29%), Positives = 298/608 (49%), Gaps = 61/608 (10%)
Query: 160 TIDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGR 219
I+ + S+ +L +D + L+I + + + G S+ +++K T MG
Sbjct: 248 NINKIDYYSIVDYLTIDVNSRRNLEITENLREKTKKG--------SLLWVLDKTNTAMGG 299
Query: 220 RLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFI 279
R LR W +P+++ + +RLNA+ L + L L E LK + DI I+ K S S
Sbjct: 300 RQLRRWIEQPLINKNPIENRLNAVEELLNNISLQEDLKEDLKSIYDIERIVGKVASKSV- 358
Query: 280 YTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYEL 339
A + + SI + ++ K S + L LN + CI T L +++L
Sbjct: 359 -NAKELISLKCSIGKVPYIKKYLS-----SFKSDL-FLNME------KCIDT-LEDIHKL 404
Query: 340 VIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMF 399
+ + N S G +++EGF +E+D LR+ ++ +ASLE + +
Sbjct: 405 LDKALLDNPSLSVKEGNIIKEGFNEEVDSLREAKSNGKKW---IASLEQKEKEETGIKSL 461
Query: 400 VPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLL 459
+ Y GY + I + L+ +G + + Y TP+ +E++ +
Sbjct: 462 K--VSYNKVFGYFIEITKANLNLVP----EGRYIRKQTLSNAER---YITPELKEMEEKI 512
Query: 460 GDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILT 519
K++D+E + + I D + K +++DC SLA VA +NNY++P +
Sbjct: 513 LGAEEKLIDIEYKLFTKIRDFIEENIDRMQKTARIISDIDCLCSLATVALENNYIKPNIN 572
Query: 520 LEPLLDIQNGRHVLQEMTVDT--FIPNDTRID-NDGRINIITGPNYSGKSIYIKQVALIV 576
+ + I+ GRH + E + FI ND+ ID + ++ +ITGPN +GKS Y++QVALI
Sbjct: 573 AKDEILIEEGRHPVVEKVIPKGEFISNDSLIDTKENQLILITGPNMAGKSTYMRQVALIT 632
Query: 577 FLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCL 628
++ IGSFVPA A + + D S + A +S+FM+++ +V +L+ ATS+SL L
Sbjct: 633 IMAQIGSFVPAKKANISICDKIFTRIGASDDLAAGKSTFMVEMWEVSNILKNATSKSLVL 692
Query: 629 LDEFGKGTLTEDGIGLLGGTINYFVTC-DVPPKVLVCTHLTELLNEGCLPKSERLKFYTM 687
LDE G+GT T DG+ + I Y ++ K L TH EL E +K Y++
Sbjct: 693 LDEVGRGTSTYDGLSIAWSVIEYICNNKNLRCKTLFATHYHELTK--LEDNIEGVKNYSV 750
Query: 688 SVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKH 747
SV EN +IVFL +++ G A SYG+ A LAG+P+ VI RA +L+ H
Sbjct: 751 SVSELEN------EIVFLRKIIRGGADQSYGIEVAKLAGLPSPVINRAKEILQ------H 798
Query: 748 VERWSHEN 755
+E EN
Sbjct: 799 IEGDKEEN 806
>sp|B1IM68|MUTS_CLOBK DNA mismatch repair protein MutS OS=Clostridium botulinum (strain
Okra / Type B1) GN=mutS PE=3 SV=1
Length = 932
Score = 224 bits (572), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 181/610 (29%), Positives = 297/610 (48%), Gaps = 65/610 (10%)
Query: 160 TIDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGR 219
I+ + S+ +L +D + L+I + + + G S+ +++K T MG
Sbjct: 248 NINKIDYYSIVDYLTIDVNSRRNLEITENLREKTKKG--------SLLWVLDKTNTAMGG 299
Query: 220 RLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFI 279
R LR W +P+++ + +RLNA+ L + L L E LK + DI I+ K S S
Sbjct: 300 RQLRRWIEQPLINKNPIENRLNAVEELLNNISLQEDLKEDLKSIYDIERIVGKVASKSV- 358
Query: 280 YTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNF--DIVEKAASCITTELAYVY 337
A + + SI + ++ K L NF D+ CI T L ++
Sbjct: 359 -NAKELISLKCSIGKVPYIKKY--------------LSNFKSDLFLNMEQCIDT-LEDIH 402
Query: 338 ELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKE 397
+L+ + N S G +++EGF +E+D LR+ ++ +ASLE + +
Sbjct: 403 KLLDKALLDNPSLSVKEGNIIKEGFNEEVDSLREAKSNGKKW---IASLEQKEKEETGIK 459
Query: 398 MFVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDN 457
+ Y GY + I + L+ +G + + Y TP+ +E++
Sbjct: 460 SLK--VSYNKVFGYFIEITKANLNLVP----EGRYIRKQTLSNAER---YITPELKEMEE 510
Query: 458 LLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPI 517
+ K++D+E + + I D + K +++DC SLA VA +NNY++P
Sbjct: 511 KILGAEEKLIDIEYKLFTKIRDFIEENIDRMQKTARIISDIDCLCSLATVALENNYIKPN 570
Query: 518 LTLEPLLDIQNGRHVLQEMTVDT--FIPNDTRID-NDGRINIITGPNYSGKSIYIKQVAL 574
+ + + I+ GRH + E + FI ND+ ID + ++ +ITGPN +GKS Y++QVAL
Sbjct: 571 INAKNEILIEEGRHPVVEKVIPKGEFISNDSLIDTKENQLILITGPNMAGKSTYMRQVAL 630
Query: 575 IVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSL 626
I ++ IGSFVPA A + + D S + A +S+FM+++ +V +L+ ATS+SL
Sbjct: 631 ITIMAQIGSFVPAKKANISICDKIFTRIGASDDLAAGKSTFMVEMWEVSNILKNATSKSL 690
Query: 627 CLLDEFGKGTLTEDGIGLLGGTINYFVTC-DVPPKVLVCTHLTELLNEGCLPKSERLKFY 685
LLDE G+GT T DG+ + I Y ++ K L TH EL E +K Y
Sbjct: 691 VLLDEVGRGTSTYDGLSIAWSVIEYICNNKNLRCKTLFATHYHELTK--LEDNIEGVKNY 748
Query: 686 TMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNN 745
++SV EN +IVFL +++ G A SYG+ A LAG+P+ VI RA +L+
Sbjct: 749 SVSVSELEN------EIVFLRKIIRGGADQSYGIEVAKLAGLPSPVINRAKEILQ----- 797
Query: 746 KHVERWSHEN 755
H+E EN
Sbjct: 798 -HIEGDKEEN 806
>sp|B8CX98|MUTS_HALOH DNA mismatch repair protein MutS OS=Halothermothrix orenii (strain
H 168 / OCM 544 / DSM 9562) GN=mutS PE=3 SV=1
Length = 896
Score = 224 bits (572), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 185/663 (27%), Positives = 314/663 (47%), Gaps = 95/663 (14%)
Query: 161 IDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRR 220
I+ + +L ++ LD+ L++ T + H G S+ ++++ +T MG R
Sbjct: 254 INRITTYNLTDYMVLDSATRYNLELTSTIRGNKHKG--------SLLNVLDQTITSMGGR 305
Query: 221 LLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIY 280
L++ W +P++D + +RL+A+ + + L+ + E LK + D+ IL K + S
Sbjct: 306 LIKKWINQPLIDRNKIETRLDAVEELVNNYLLLQEIREHLKGIYDLERILGKVSYGS--A 363
Query: 281 TASDWTAFLKSICSLLHVNKIFE---VGISESLREQLRLLNFDIVEKAASCITTELAYVY 337
A D A SI L + K E + +++ E FD + A + + + V
Sbjct: 364 NARDLAALKYSILKLPQIKKDLEQLNTKLFKNMHE-----TFDPLIDLAGLL--DRSIVD 416
Query: 338 ELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKE 397
E + + + G L+++G+ ELDELR+ E ++ +A+L+ +
Sbjct: 417 EPPVSVRE---------GGLIKDGYSSELDELRKARTEGKDW---IANLQKTERERTGIS 464
Query: 398 MFVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDN 457
+ + GY + I + LD + + S+ + TP+ +E +
Sbjct: 465 SL--KVGFNKVFGYYIEITKANLDRVPDNYTRKQTLSNSER--------FITPELKEKEA 514
Query: 458 LLGDIYHKILDME-------RAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQ 510
L+ KI D+E R I RD + I K ++LD SLA A +
Sbjct: 515 LVLGAEEKINDLEYKLFVKIRDIVRDNIKRIK-------KTAAIISKLDVLTSLAQNALE 567
Query: 511 NNYMRPILTLEPLLDIQNGRH-VLQEMTVDTFIPNDTRID-NDGRINIITGPNYSGKSIY 568
+Y RP + + +++I GRH V+++M F+PNDT +D + R IITGPN SGKS Y
Sbjct: 568 RDYNRPRINNDGVIEIIKGRHPVVEDMGKGAFVPNDTYLDLEEERFIIITGPNMSGKSTY 627
Query: 569 IKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQ 620
++QVALIV ++ +GSFVPAD AT+G+ D S +T QS+FM+++++V ++
Sbjct: 628 MRQVALIVLMAQMGSFVPADKATIGIVDRIFTRVGASDDLTTGQSTFMVEMNEVANIVNN 687
Query: 621 ATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCD-VPPKVLVCTHLTELLNEGCLPKS 679
AT SL +LDE G+GT T DG+ + Y D + + L TH EL L
Sbjct: 688 ATRNSLIILDEVGRGTSTYDGLSIAWAVSEYINNPDRIGARTLFATHYHELTQ---LENR 744
Query: 680 ERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVL 739
+K Y + V D + + FL++++PG A SYG+ A LAG+P E+I RA +L
Sbjct: 745 PGIKNYNVLV------EEDEDGVHFLHKIIPGKASESYGIEVAQLAGLPMEIIIRAQEIL 798
Query: 740 EAAQN------------NKHVERWSH----ENISAQDQQY---KNAVEKMLAFDVLKGDL 780
+ NK++ + NI D++Y +N +K+ + K +
Sbjct: 799 AELEKKGKESTKTGKGENKNISHKTESDLINNIHESDKEYLTKRNTNDKVQQLPLFKSEY 858
Query: 781 RLF 783
R+
Sbjct: 859 RVI 861
>sp|Q8XL87|MUTS_CLOPE DNA mismatch repair protein MutS OS=Clostridium perfringens (strain
13 / Type A) GN=mutS PE=3 SV=1
Length = 909
Score = 224 bits (571), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 186/602 (30%), Positives = 288/602 (47%), Gaps = 68/602 (11%)
Query: 158 SITIDSVIEV-SLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTP 216
S+T + IEV SL F+ +D ++ L++ + + S G S+ +++K T
Sbjct: 245 SLTNINDIEVYSLVDFMTIDLSSRRNLELTENLREKSKKG--------SLLWVLDKTETS 296
Query: 217 MGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSP 276
MG R+LR W P+++ E + RLNA+ L SL E L + DI IL K ++
Sbjct: 297 MGSRMLRRWIEEPLVNKEKITLRLNAVEELFNDLSLNDSLKEALHDIYDIERILGKISNK 356
Query: 277 SFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYV 336
+ A D A SI + +V I E S LR L+ +L +
Sbjct: 357 N--ANAKDLIALKTSIGKIPNVKGIIENCTSSLLRNYHHNLD-------------DLRDI 401
Query: 337 YELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLE--EVASLELVQLPHL 394
YEL+ I + S G L+++GF E+DELR +++ E E + L
Sbjct: 402 YELLEKSIKEDPSLTLKDGDLIKDGFNSEIDELRLAKTNGKDWISSLENREREFTGIKSL 461
Query: 395 CKEMFVPCIVY---IHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPK 451
K F Y I + Y + TL + F TP+
Sbjct: 462 -KVGFNKVFGYYIEISKANYSSIPEGRYIRKQTLANAERF----------------ITPE 504
Query: 452 TRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQN 511
+E++ L K+ +E I D+ + + D L AELDC +LA VA +N
Sbjct: 505 LKEIEEKLLGASEKLCSLEYDIFLDIRNEVENHIDRLKTTAKIIAELDCISNLAFVALEN 564
Query: 512 NYMRPILTLEPLLDIQNGRHVLQEMTVDT--FIPNDTRID-NDGRINIITGPNYSGKSIY 568
++++P + + I+NGRH + E + FIPNDT I+ +D ++ IITGPN +GKS Y
Sbjct: 565 DFIKPEINEDGETKIENGRHPVVEKVIPKGEFIPNDTIINKDDNQLLIITGPNMAGKSTY 624
Query: 569 IKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQ 620
++QVA+I + IGSFVPA A + + D S + +S+FM+++ +V +L+
Sbjct: 625 MRQVAIITLMCQIGSFVPASKANISVVDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKN 684
Query: 621 ATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFV-TCDVPPKVLVCTHLTELLN-EGCLPK 678
AT SL LLDE G+GT T DG+ + I Y ++ K L TH EL EG +
Sbjct: 685 ATENSLVLLDEVGRGTSTYDGLSIAWSVIEYICKNKNLRCKTLFATHYHELTKLEGEI-- 742
Query: 679 SERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYV 738
++ Y+++V +NN I+FL +++ G A SYG+ A LAG+P +VI RA +
Sbjct: 743 -HGVRNYSVAVKEVDNN------IIFLRKIIEGGADQSYGIEVAKLAGIPDDVINRAKEI 795
Query: 739 LE 740
LE
Sbjct: 796 LE 797
>sp|B8I2Q5|MUTS_CLOCE DNA mismatch repair protein MutS OS=Clostridium cellulolyticum
(strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=mutS
PE=3 SV=1
Length = 873
Score = 224 bits (571), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 187/633 (29%), Positives = 313/633 (49%), Gaps = 82/633 (12%)
Query: 127 EVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAHEALQIF 186
++ V ASG LL LE+ + V+ L + N+ +L +++ LDA++ L++
Sbjct: 231 DIAVNASGALLKYLESTQKVN-LSHIQKFNS---------YALEEYMILDASSRRNLELT 280
Query: 187 QTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFF 246
+T + S G S+ +++K +T MG RLLR W +P+++ +++ RL+A+
Sbjct: 281 ETMREKSKKG--------SLLWVLDKTMTSMGGRLLRKWIEQPLINHGDISLRLDAVEEL 332
Query: 247 LCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKI---FE 303
+ E LK V DI ++ K S D A S+C + ++ + FE
Sbjct: 333 KNKFMVRVEARELLKRVYDIERLMGKVVLGSV--NCRDLIALKNSMCQIPYIKSLLNGFE 390
Query: 304 VGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFC 363
++ EQL L D+ C E++ + E + I + G ++++G+
Sbjct: 391 AEYIKNCGEQLDCLE-DV------CNLIEVSIIDEPPVTIKE---------GGIIKDGYN 434
Query: 364 DELDELRQIYEELPEFLE--EVASLELVQLPHLCKEMFVPCIVYIHQI--GYLMCIFEEK 419
E+D+LR + +++ E + E + +L K F Y ++ Y + EE
Sbjct: 435 PEVDKLRMASIQGKDWIAALEASQREKTGIKNL-KVGFNRVFGYYIEVTKSYFSLVPEEY 493
Query: 420 LDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVS 479
+ TL + Y TP+ +E+++ + KI+ +E ++ ++
Sbjct: 494 IRKQTLSNCER----------------YITPELKEIEDTILGAEEKIIQLEYSLFVEIKE 537
Query: 480 HICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRH-VLQEMTV 538
I + AE+D SLA VA + Y +P ++L ++I GRH V+++MT
Sbjct: 538 KIAEQLSRIKSTARALAEIDVLASLAEVADREGYCKPEVSLSDKIEIIEGRHPVVEKMTD 597
Query: 539 DT-FIPNDTRID-NDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD 596
+ F+PNDT +D + R+ IITGPN +GKS Y++Q ALIV ++ IGSFVPA A +GL D
Sbjct: 598 KSGFVPNDTVLDMEEDRLAIITGPNMAGKSTYMRQTALIVLMAQIGSFVPAATAKIGLVD 657
Query: 597 --------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGT 648
S + + QS+FM+++ +V +L AT +SL +LDE G+GT T DG+ +
Sbjct: 658 RIFTRVGASDDLASGQSTFMVEMSEVANILINATKRSLLVLDEIGRGTSTFDGLSIAWAV 717
Query: 649 INYFVTCD-VPPKVLVCTHLTELLN-EGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLY 706
I Y V + + + L TH EL EG LP +K Y ++V ED++FL
Sbjct: 718 IEYIVNKEQLGCRTLFATHYHELTELEGKLPG---IKNYCITV------KEKGEDVIFLR 768
Query: 707 RLVPGHALLSYGLHCALLAGVPAEVIKRAAYVL 739
+++ G A SYG+ A LAGVP VI RA +L
Sbjct: 769 KIIRGGADGSYGIQVAKLAGVPQSVIDRAKEIL 801
>sp|Q0STR4|MUTS_CLOPS DNA mismatch repair protein MutS OS=Clostridium perfringens (strain
SM101 / Type A) GN=mutS PE=3 SV=1
Length = 910
Score = 224 bits (571), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 186/605 (30%), Positives = 289/605 (47%), Gaps = 68/605 (11%)
Query: 158 SITIDSVIEV-SLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTP 216
S+T + IEV SL F+ +D ++ L++ + + S G S+ +++K T
Sbjct: 245 SLTNINDIEVYSLVDFMTIDLSSRRNLELTENLREKSKKG--------SLLWVLDKTETS 296
Query: 217 MGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSP 276
MG R+LR W P+++ E + RLNA+ L SL E L + DI IL K ++
Sbjct: 297 MGSRMLRRWIEEPLVNKEKITLRLNAVEELFNDLSLNDSLKEALHDIYDIERILGKISNK 356
Query: 277 SFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYV 336
+ A D A SI + +V I E S L+ L+ +L +
Sbjct: 357 N--ANAKDLIALKTSIGKIPNVKGIIENCTSSLLKNYHHNLD-------------DLRDI 401
Query: 337 YELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLE--EVASLELVQLPHL 394
YEL+ I + S G L+++GF E+DELR +++ E E + L
Sbjct: 402 YELLEKSIKEDPSLTLKDGDLIKDGFNGEIDELRLAKTNGKDWISSLENREREFTGIKSL 461
Query: 395 CKEMFVPCIVY---IHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPK 451
K F Y I + Y + TL + F TP+
Sbjct: 462 -KVGFNKVFGYYIEISKANYSSIPEGRYIRKQTLANAERF----------------ITPE 504
Query: 452 TRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQN 511
+E++ L K+ +E I D+ + + D L AELDC +LA VA +N
Sbjct: 505 LKEIEEKLLGASEKLCSLEYDIFLDIRNEVENHIDRLKTTAKIIAELDCISNLAFVALEN 564
Query: 512 NYMRPILTLEPLLDIQNGRHVLQEMTV--DTFIPNDTRID-NDGRINIITGPNYSGKSIY 568
++++P + + I+NGRH + E + FIPNDT I+ +D ++ IITGPN +GKS Y
Sbjct: 565 DFIKPEINEDGETKIENGRHPVVEKVIPKGEFIPNDTIINKDDNQLLIITGPNMAGKSTY 624
Query: 569 IKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQ 620
++QVA+I + IGSFVPA A + + D S + +S+FM+++ +V +L+
Sbjct: 625 MRQVAIITLMCQIGSFVPASKANISVVDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKN 684
Query: 621 ATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFV-TCDVPPKVLVCTHLTELLN-EGCLPK 678
AT SL LLDE G+GT T DG+ + I Y ++ K L TH EL EG +
Sbjct: 685 ATENSLVLLDEVGRGTSTYDGLSIAWSVIEYICKNKNLRCKTLFATHYHELTKLEGEI-- 742
Query: 679 SERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYV 738
++ Y+++V +NN I+FL +++ G A SYG+ A LAG+P EVI RA +
Sbjct: 743 -HGVRNYSVAVKEVDNN------IIFLRKIIEGGADQSYGIEVAKLAGIPDEVINRAKEI 795
Query: 739 LEAAQ 743
LE +
Sbjct: 796 LETLE 800
>sp|Q0TRD6|MUTS_CLOP1 DNA mismatch repair protein MutS OS=Clostridium perfringens (strain
ATCC 13124 / NCTC 8237 / Type A) GN=mutS PE=3 SV=1
Length = 910
Score = 223 bits (567), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 185/605 (30%), Positives = 289/605 (47%), Gaps = 68/605 (11%)
Query: 158 SITIDSVIEV-SLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTP 216
S+T + IEV SL F+ +D ++ L++ + + S G S+ +++K T
Sbjct: 245 SLTNINDIEVYSLVDFMTIDLSSRRNLELTENLREKSKKG--------SLLWVLDKTETS 296
Query: 217 MGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSP 276
MG R+LR W P+++ E + RLNA+ L SL E L + DI IL K ++
Sbjct: 297 MGSRMLRRWIEEPLVNKEKITLRLNAVEELFNDLSLNDSLKEALHDIYDIERILGKISNK 356
Query: 277 SFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYV 336
+ A D A SI + +V I E S L+ L+ +L +
Sbjct: 357 N--ANAKDLIALKTSIGKIPNVKGIIENCTSSLLKNYHHNLD-------------DLRDI 401
Query: 337 YELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLE--EVASLELVQLPHL 394
Y+L+ I + S G L+++GF E+DELR +++ E E + L
Sbjct: 402 YDLLEKSIKEDPSLTLKDGDLIKDGFNGEIDELRLAKTNGKDWISSLENREREFTGIKSL 461
Query: 395 CKEMFVPCIVY---IHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPK 451
K F Y I + Y + TL + F TP+
Sbjct: 462 -KVGFNKVFGYYIEISKANYSSIPEGRYIRKQTLANAERF----------------ITPE 504
Query: 452 TRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQN 511
+E++ L K+ +E I D+ + + D L AELDC +LA VA +N
Sbjct: 505 LKEIEEKLLGASEKLCSLEYDIFLDIRNEVENHIDRLKTTAKIIAELDCISNLAFVALEN 564
Query: 512 NYMRPILTLEPLLDIQNGRHVLQEMTVDT--FIPNDTRID-NDGRINIITGPNYSGKSIY 568
++++P + + I+NGRH + E + FIPNDT I+ +D ++ IITGPN +GKS Y
Sbjct: 565 DFIKPEINEDGETKIENGRHPVVEKVIPKGEFIPNDTIINKDDNQLLIITGPNMAGKSTY 624
Query: 569 IKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQ 620
++QVA+I + IGSFVPA A + + D S + +S+FM+++ +V +L+
Sbjct: 625 MRQVAIITLMCQIGSFVPASKANISVVDKIFTRIGASDDLAGGKSTFMVEMWEVSNILKN 684
Query: 621 ATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFV-TCDVPPKVLVCTHLTELLN-EGCLPK 678
AT SL LLDE G+GT T DG+ + I Y ++ K L TH EL EG +
Sbjct: 685 ATENSLVLLDEVGRGTSTYDGLSIAWSVIEYICKNKNLRCKTLFATHYHELTKLEGEI-- 742
Query: 679 SERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYV 738
++ Y+++V +NN I+FL +++ G A SYG+ A LAG+P EVI RA +
Sbjct: 743 -HGVRNYSVAVKEVDNN------IIFLRKIIEGGADQSYGIEVAKLAGIPDEVINRAKEI 795
Query: 739 LEAAQ 743
LE +
Sbjct: 796 LETLE 800
>sp|B1KSA3|MUTS_CLOBM DNA mismatch repair protein MutS OS=Clostridium botulinum (strain
Loch Maree / Type A3) GN=mutS PE=3 SV=1
Length = 932
Score = 222 bits (565), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 180/608 (29%), Positives = 298/608 (49%), Gaps = 61/608 (10%)
Query: 160 TIDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGR 219
I+ + S+ +L +D + L+I + + G S+ +++K T MG
Sbjct: 248 NINKIDYYSIVDYLTIDVNSRRNLEITENLREKIKKG--------SLLWVLDKTNTAMGG 299
Query: 220 RLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFI 279
R LR W +P+++ + +RLNA+ L + L L E LK + DI I+ K S S
Sbjct: 300 RQLRRWIEQPLINKTPIENRLNAVEELLNNISLQEDLKEDLKSIYDIERIVGKVASKSV- 358
Query: 280 YTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYEL 339
A + + SI + ++ K S + L LN + CI T L +++L
Sbjct: 359 -NAKELISLKCSIGKVPYIKKYLS-----SFKSDL-FLNME------QCIDT-LEDIHKL 404
Query: 340 VIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMF 399
+ + N S G +++EGF +E+D LR+ ++ +ASLE + +
Sbjct: 405 LDKALLDNPSLSVKEGNIIKEGFNEEVDSLREAKSNGKKW---IASLEQKEKEETGIKSL 461
Query: 400 VPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLL 459
+ Y GY + I + L+ +G + + Y TP+ +E++ +
Sbjct: 462 K--VSYNKVFGYFIEITKANLNLVP----EGRYIRKQTLSNAER---YITPELKEMEEKI 512
Query: 460 GDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILT 519
K++D+E + ++ I D + K +++DC SLA VA +NNY++P +
Sbjct: 513 LGAEEKLIDIEYKLFTEIRDFIEENIDRMQKTARIISDIDCLCSLATVALENNYIKPNIN 572
Query: 520 LEPLLDIQNGRHVLQEMTVDT--FIPNDTRID-NDGRINIITGPNYSGKSIYIKQVALIV 576
+ + I+ GRH + E + FI ND+ ID + ++ +ITGPN +GKS Y++QVALI
Sbjct: 573 AKDEILIEEGRHPVVEKVIPKGEFISNDSLIDTKENQLILITGPNMAGKSTYMRQVALIT 632
Query: 577 FLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCL 628
++ IGSFVPA A + + D S + A +S+FM+++ +V +L+ ATS+SL L
Sbjct: 633 IMAQIGSFVPAKEANISICDKIFTRIGASDDLAAGKSTFMVEMWEVSNILKNATSKSLVL 692
Query: 629 LDEFGKGTLTEDGIGLLGGTINYFVTC-DVPPKVLVCTHLTELLNEGCLPKSERLKFYTM 687
LDE G+GT T DG+ + I Y ++ K L TH EL + +K Y++
Sbjct: 693 LDEVGRGTSTYDGLSIAWSVIEYICNNKNLRCKTLFATHYHELTK--LEDNIKGVKNYSV 750
Query: 688 SVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKH 747
SV EN +IVFL +++ G A SYG+ A LAG+P+ VI RA +L+ H
Sbjct: 751 SVSELEN------EIVFLRKIIRGGADQSYGIEVAKLAGLPSPVINRAKEILQ------H 798
Query: 748 VERWSHEN 755
+E EN
Sbjct: 799 IEGDKEEN 806
>sp|B9MJU0|MUTS_CALBD DNA mismatch repair protein MutS OS=Caldicellulosiruptor bescii
(strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=mutS PE=3
SV=1
Length = 863
Score = 221 bits (564), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 172/577 (29%), Positives = 282/577 (48%), Gaps = 59/577 (10%)
Query: 197 IGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASL 256
I R+++ S+ G++++ T MG RLL+ W RP++D+ +N RL+++ + + +
Sbjct: 271 IQRSRKN-SLLGILDQTKTSMGSRLLKKWIERPLIDIIEINKRLDSVEELKSNYSTLVQV 329
Query: 257 HETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRL 316
E L + DI + KF + A D + KSI L + + SE L+E
Sbjct: 330 EELLSRMYDIERLSSKFAYKNV--NAKDLLSLKKSIEVLPTLKQFLSSFDSELLKEIYEG 387
Query: 317 LNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEEL 376
L+ L +Y L+ I+ + G +++EGF +E+D LR I +
Sbjct: 388 LD-------------TLEDIYALIDSSINEDAPVSLKEGGIIKEGFNEEVDRLRNISKNS 434
Query: 377 PEFLEEVASLE--LVQLPHLCKEMFVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFA 434
E L E E L + +L I Y GY + + + ++ A
Sbjct: 435 KELLVEYEEKERNLTGIKNLR-------IGYNKVFGYYIEVTKSNYSLVPDRYIRKQTLA 487
Query: 435 FSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNF 494
++ Y T + ++L++ + K++++E + ++ I + + K +
Sbjct: 488 NAER--------YITEELKKLEDEILGADQKLIELEYQLFCEIRDRIEAQIERIQKTASN 539
Query: 495 AAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTVD--TFIPNDTRIDN-D 551
A LD S A +A N Y+RP + L + I+NGRH + E + FIPNDT +D +
Sbjct: 540 IANLDVLCSFARIAIDNEYVRPNVYLGDRIYIKNGRHPVVEKMIGRGNFIPNDTELDQAE 599
Query: 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAE 603
R+ IITGPN +GKS Y++QVALIV ++ +G FVPAD A +G+ D S +++
Sbjct: 600 NRVLIITGPNMAGKSTYMRQVALIVIMAQMGCFVPADEAHIGVVDKIFSRIGASDDISSG 659
Query: 604 QSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFV-TCDVPPKVL 662
QS+FM+++ +V +L+ AT +SL + DE G+GT T DG+ + + Y + K L
Sbjct: 660 QSTFMVEMSEVANILKNATPKSLIIFDEVGRGTSTYDGLSIAWAVLEYVADKSKIGAKTL 719
Query: 663 VCTHLTELLN-EGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHC 721
TH EL E +P +K Y + V N I+FL ++V G SYG+H
Sbjct: 720 FATHYHELTELEERIPG---VKNYRVDVKEEGKN------IIFLRKIVRGGCDSSYGIHV 770
Query: 722 ALLAGVPAEVIKRAAYVL----EAAQNNKHVERWSHE 754
A LAG+P EV+KRA +L EA N K++ + E
Sbjct: 771 ARLAGIPEEVLKRAEEILKQLEEADINRKNIRKLRRE 807
>sp|A3DDI3|MUTS_CLOTH DNA mismatch repair protein MutS OS=Clostridium thermocellum
(strain ATCC 27405 / DSM 1237) GN=mutS PE=3 SV=1
Length = 870
Score = 221 bits (564), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 181/630 (28%), Positives = 313/630 (49%), Gaps = 74/630 (11%)
Query: 130 VRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQTD 189
+ ASG LL + LEQ + N S I + + +++ LD L++ +T
Sbjct: 234 INASGALL---------EYLEQTQKVNLS-HIQNFNVYRIEEYMILDMATRRNLELTETM 283
Query: 190 KHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCS 249
+ + G S+ ++++ +T MG R LR W +P+++L ++ RL+A++ F
Sbjct: 284 REKNRKG--------SLLWVLDRTMTSMGGRTLRKWIEQPLINLHDIKDRLDAVNEFKER 335
Query: 250 EELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISES 309
+ + + E L+ V DI ++ K S A + + S+ H +G
Sbjct: 336 FMIRSEVRELLRAVYDIERLMTKVILGS---------ANCRDLISIKH-----SIGQVPY 381
Query: 310 LREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDEL 369
++E LR L D+ + + + T L VYE++ I + G +++EGF +E+D L
Sbjct: 382 IKELLRDLKADLNVLSYNELDT-LTDVYEIIDKAIVDDPPVAVKEGGIIKEGFNEEVDRL 440
Query: 370 RQIYEELPEFLEEVAS--LELVQLPHLCKEMFVPCIVYIHQI--GYLMCIFEEKLDDTTL 425
R ++ +++ + S E + +L K F Y ++ Y + ++ + TL
Sbjct: 441 RSASKDGKKWIAHLESKERERTGIKNL-KVGFNKVFGYYIEVTKSYYSQVPDDYIRKQTL 499
Query: 426 EQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFS 485
+ Y TP+ +E++N + +++++E I D+ + +
Sbjct: 500 ANCER----------------YITPELKEIENTVLGAEDRLVELEYQIFVDVRNKVAKEI 543
Query: 486 DHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTV--DTFIP 543
+ L A +D SLA VA + +Y P +T + ++I++GRH + E + + F+P
Sbjct: 544 NRLKTTARSLARIDVLCSLAEVADRESYTMPEVTDDDKIEIKDGRHPVVEKIIGQEAFVP 603
Query: 544 NDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD------ 596
NDT +D D +I IITGPN +GKS Y++QVALIV ++ IGSFVPA +A +G+ D
Sbjct: 604 NDTYLDMDENQIAIITGPNMAGKSTYMRQVALIVLMAQIGSFVPAKSAKIGIVDRIFTRV 663
Query: 597 --SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVT 654
S + A QS+FM+++ +V +L ATS+SL +LDE G+GT T DG+ + I Y +
Sbjct: 664 GASDDLAAGQSTFMVEMSEVANILGNATSKSLLVLDEIGRGTSTYDGLSIAWAVIEY-IG 722
Query: 655 CDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHAL 714
+ + L TH EL + E +K Y +SV EDI+FL +++ G A
Sbjct: 723 EKIGARTLFATHYHELTE--LEERIEGIKNYCISV------EEKGEDIIFLRKILRGGAD 774
Query: 715 LSYGLHCALLAGVPAEVIKRAAYVLEAAQN 744
SYG+ A LAG+P VI RA +L+ ++
Sbjct: 775 NSYGVQVARLAGIPDPVIHRAKEILKKLED 804
>sp|A8F753|MUTS_THELT DNA mismatch repair protein MutS OS=Thermotoga lettingae (strain
ATCC BAA-301 / DSM 14385 / TMO) GN=mutS PE=3 SV=1
Length = 811
Score = 220 bits (560), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 161/573 (28%), Positives = 278/573 (48%), Gaps = 66/573 (11%)
Query: 194 HMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELM 253
H+ + ++G ++F ++N T MG RLL+NW L+P+ DL +N RL+ + F+ L+
Sbjct: 261 HLSLVGGEKGKNLFDVLNHTKTSMGSRLLKNWILQPLRDLYEINKRLDKVQAFVEDSILL 320
Query: 254 ASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKS------ICSLLHVNKIF-EVGI 306
+ E L+ V+DI I + N + D A + I +L N+ F E +
Sbjct: 321 NEIREYLQAVRDIQRIANRINYGK--ASVKDLVALRSTLQVCPYIKEVLLTNEAFPEAAM 378
Query: 307 SESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDEL 366
+ L + +LN I E+ +S I G G +++EG+ ++L
Sbjct: 379 VDCLHDICEILNDAIKEEPSSVI-----------------------GEGKVIKEGYDEQL 415
Query: 367 DELRQIYEELPEFLE--EVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCIFEEKLDDTT 424
D+LR++ EFL E + +P+L + Y GY + I + L
Sbjct: 416 DQLRELVYHSQEFLNNFEQRERDRTGIPNLR-------VGYNSVFGYYIEITKSHLSKIP 468
Query: 425 LEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLF 484
++ ++ + T + +E + + + E+ I ++ + +
Sbjct: 469 PNYVRKQTLVNAER--------FITDELKEFEQKMLTAKENLERREKEIYDEICASLSSK 520
Query: 485 SDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTVDTFIPN 544
+++ F A++D +LA VA + Y +P + + L ++N RH + E VDTF+PN
Sbjct: 521 VGLIIELAEFLAQIDVLSTLAYVAIRYGYTKPSFSNDGKLLLRNSRHPVVERLVDTFVPN 580
Query: 545 DTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD-------- 596
D +D I+TGPN SGKS +I+QVAL+ ++ +GSFVPAD A + + D
Sbjct: 581 DLEMDRTKNFIILTGPNMSGKSTFIRQVALVSIMAQMGSFVPADEAILPVFDRIFAKMGI 640
Query: 597 SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCD 656
+ + +S+F+I++++V ++ QAT SL LLDE G+GT T DGI + ++ ++
Sbjct: 641 RDDIASGKSTFLIEMNEVAKIVYQATENSLILLDEVGRGTSTFDGIS-IAWAVSEYLQNQ 699
Query: 657 VPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLS 716
+ K + TH TEL +E K Y V + + ++FL+R+V G A S
Sbjct: 700 ISCKCIFATHFTEL--------TELAKMYDGIVNKTVQVIEEKNQVIFLHRVVDGIADRS 751
Query: 717 YGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVE 749
YG+ A +AG+P E+I+RA VL+ N +E
Sbjct: 752 YGIEVAGIAGLPGEIIQRAREVLDVIANKSELE 784
>sp|A4XL47|MUTS_CALS8 DNA mismatch repair protein MutS OS=Caldicellulosiruptor
saccharolyticus (strain ATCC 43494 / DSM 8903) GN=mutS
PE=3 SV=1
Length = 863
Score = 219 bits (559), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 173/604 (28%), Positives = 293/604 (48%), Gaps = 64/604 (10%)
Query: 169 LNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLR 228
+ +L++D + L++ ++ I R+K+ S+FG++++ T MG RL++ W R
Sbjct: 250 VQNYLQIDLSTKRNLELTES-------IIARSKKN-SLFGILDQAKTSMGSRLIKKWLER 301
Query: 229 PILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAF 288
P++D+ +N RL+A+ + L+ + L+ + DI + KF S A D +
Sbjct: 302 PLIDVVEINRRLDAVEELYNNFPLLMQIEGLLEGIYDIERLSSKFAYKSI--NAKDLLSL 359
Query: 289 LKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNR 348
KSI L + ++ S L+E L+ L VY L+ I+ +
Sbjct: 360 KKSIEVLPRLKELLGEFKSPLLKELYNELD-------------TLEDVYSLIDSSINEDA 406
Query: 349 SKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLE--LVQLPHLCKEMFVPCIVYI 406
G ++++GF D +D LR I + E L + E L + +L I Y
Sbjct: 407 PVGLKEGGIIKDGFNDHVDRLRNISKNSKELLIQYEEKERNLTGIKNLK-------IGYN 459
Query: 407 HQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKI 466
GY + + + ++ A ++ Y T + ++L++ + + K+
Sbjct: 460 KVFGYYIEVTKSNYSLVPERYIRKQTLANAER--------YVTEELKKLEDEIINAEQKL 511
Query: 467 LDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDI 526
+++E + + I + + K + A +D S A +A N Y +PI+ L + I
Sbjct: 512 VELEYELFCQIRDKIESQIERIQKTASCIAIIDALCSFAHIAIDNRYTKPIVYLGDRIYI 571
Query: 527 QNGRHVLQEMTV--DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGS 583
+NGRH + E + F+PNDT +DND R+ IITGPN +GKS Y++QVALIV ++ +G
Sbjct: 572 KNGRHPVVEKMIGYSNFVPNDTELDNDQNRVLIITGPNMAGKSTYMRQVALIVIMAQMGC 631
Query: 584 FVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKG 635
FVPA+ A +G+ D S +++ QS+FM+++ +V +L+ AT +SL + DE G+G
Sbjct: 632 FVPAEEAQIGIVDKIFSRIGASDDISSGQSTFMVEMSEVANILKNATPKSLIIFDEVGRG 691
Query: 636 TLTEDGIGLLGGTINYFV-TCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPEN 694
T T DG+ + + + + K L TH EL K +K Y + V
Sbjct: 692 TSTYDGLSIAWAVLEFVADKSKIGAKTLFATHYHELTE--LEEKISGVKNYRVDVKEEGK 749
Query: 695 NSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVL----EAAQNNKHVER 750
N I+FL ++V G SYG+H A LAG+P EV++RA +L EA N K +R
Sbjct: 750 N------IIFLRKIVRGGCDSSYGIHVARLAGIPEEVLQRAEQILKKLEEADINRKEAKR 803
Query: 751 WSHE 754
E
Sbjct: 804 LRKE 807
>sp|A1R0M2|MUTS_BORT9 DNA mismatch repair protein MutS OS=Borrelia turicatae (strain
91E135) GN=mutS PE=3 SV=1
Length = 860
Score = 218 bits (555), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 163/565 (28%), Positives = 276/565 (48%), Gaps = 74/565 (13%)
Query: 204 FSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYV 263
+S++ ++N C TPMG+RLLR + L P+LD+ +N+RL+ + F + L L + L V
Sbjct: 284 YSLYSVLNDCKTPMGKRLLREYILNPLLDIVAINNRLDHVEFLNNNINLSMKLRDILSNV 343
Query: 264 KDIPHI-----LKKFNSPSFIYTASDWTAFLKSICSLLHVNK----IFEVGISESLREQL 314
DI I +KK+ F+ TAF + LL+ + IF+V ++RE
Sbjct: 344 WDIERIISRLQMKKYVKKDFLLIKESLTAFFLA-KRLLNEHSFSYWIFDVNDENNIRE-- 400
Query: 315 RLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYE 374
+ +ID + SKE L++ G+ E+D LR+I
Sbjct: 401 -------------------------IYSLIDCSISKEPD--ELIQHGYNFEIDRLREIKN 433
Query: 375 ELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFA 434
+++++ + E + + I +I FE + + Q+ F
Sbjct: 434 NASKYVDDYLNFE--------RNFSKISSLKIRRINVRGLFFE--VTKSYYGQVPS-HFI 482
Query: 435 FSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNF 494
S KR Y T K EL+ + D +L +E+ + D+ S I S + K NF
Sbjct: 483 ESQTLNSVKR--YKTNKLIELERDINDAEDNLLALEQEVFDDIASKIVKHSVVIKKIANF 540
Query: 495 AAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQE---MTVDTFIPNDTRIDND 551
A +D A +A +N Y+RP LT + ++ RH + E V+ F N +IDND
Sbjct: 541 FAYVDVVSDFAYLAKKNEYVRPTLTNNKEIILECSRHPVVEHYMKGVEAFTKNSVKIDND 600
Query: 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAE 603
+ITGPN +GKS Y++Q AL+V + HIGSFVPA+ A +G+TD S +++
Sbjct: 601 KYFCLITGPNMAGKSTYLRQTALVVLMGHIGSFVPANQAIIGITDKIFCRIGASDNISKG 660
Query: 604 QSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLV 663
+S+F++++++ +LR AT SL ++DE G+GT T DG+ + + Y + + + L
Sbjct: 661 ESTFLVEMNETANILRNATQNSLIIMDEVGRGTSTNDGLAIAYSIVEYILE-HIQARSLF 719
Query: 664 CTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCAL 723
TH EL K + +M + R ++++FL + +L SYG++ A
Sbjct: 720 ATHFHEL----SAIKHDSFVNLSMKIERQG------DELIFLREVEEKPSLNSYGIYVAR 769
Query: 724 LAGVPAEVIKRAAYVLEAAQNNKHV 748
+AG+P +VI+RA +L++ + +H+
Sbjct: 770 IAGIPLKVIERANVILKSLTSREHL 794
>sp|A5N8I5|MUTS_CLOK5 DNA mismatch repair protein MutS OS=Clostridium kluyveri (strain
ATCC 8527 / DSM 555 / NCIMB 10680) GN=mutS PE=3 SV=1
Length = 871
Score = 218 bits (554), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 178/620 (28%), Positives = 300/620 (48%), Gaps = 76/620 (12%)
Query: 172 FLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPIL 231
+L +D + L+I ++ + G S+ G+++K T MG R LR W +P++
Sbjct: 261 YLTIDINSKRNLEIVESLRESKKKG--------SLLGVIDKTNTSMGGRQLRKWIEQPLI 312
Query: 232 DLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKS 291
D + RL+++ L + L E LK + DI + K +S S A + + S
Sbjct: 313 DRNKIMERLDSVEEILNNICYHEDLKEALKNIYDIERLAGKISSKSV--NAKELNSLKSS 370
Query: 292 ICSLLHVNKI---FEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNR 348
I + + I FE + +++ + L EL +Y L+ I N
Sbjct: 371 IEKIPDIKVILSNFETSLLKNMYKNL----------------DELKDIYMLLDKAILDNP 414
Query: 349 SKEKGYGTLVREGFCDELDELRQIYEELPEFLE--EVASLELVQLPHLCKEMFVPCIVYI 406
S G L++EG+ E+D L++ + +++ E + EL ++ L I Y
Sbjct: 415 SVSLKEGNLIKEGYDSEIDRLKEAKVKGKDWIASLESSERELTKIKSLK-------IGYN 467
Query: 407 HQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKI 466
GY + ++ + L + + +R Y TP+ +E+++ + K+
Sbjct: 468 KVFGYYI-----EVTKSNLNLVPEHRYIRKQTLSNAER--YITPELKEMEDKILGAEEKL 520
Query: 467 LDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDI 526
+ +E ++ + + + +E+DC SLA A +NNY +P +TL + I
Sbjct: 521 IYLEYNAFVEVRDKVEKEVTRIQNSARIISEVDCLTSLARAALENNYCKPEITLSDRVYI 580
Query: 527 QNGRHVLQEMTVDT--FIPNDTRIDN-DGRINIITGPNYSGKSIYIKQVALIVFLSHIGS 583
+ GRH + E + T F+ NDT ID + ++ +ITGPN +GKS Y++QVAL+ ++ IGS
Sbjct: 581 EEGRHPVVENMLSTGEFVSNDTDIDTGENQLLLITGPNMAGKSTYMRQVALVTIMAQIGS 640
Query: 584 FVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKG 635
FVPA +A++ + D S + + +S+FM+++ +V +L+ AT++SL LLDE G+G
Sbjct: 641 FVPAKSASISICDKIFTRIGASDDLASGKSTFMVEMWEVSNILKNATNKSLILLDEVGRG 700
Query: 636 TLTEDGIGLLGGTINYFV-TCDVPPKVLVCTHLTELLN-EGCLPKSERLKFYTMSVLRPE 693
T T DG+ + I Y + K L TH EL EG K + +K Y +SV E
Sbjct: 701 TSTYDGLSIAWSVIEYICRESKLRCKTLFATHYHELTKLEG---KIKGVKNYCVSVKEVE 757
Query: 694 NNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERWSH 753
NN IVFL +++ G A SYG+ A LAG+P EV+KRA +L + + K E
Sbjct: 758 NN------IVFLRKIIRGGADQSYGIEVAKLAGLPEEVLKRAREILNSLETEKTEESMEG 811
Query: 754 ENI---------SAQDQQYK 764
N+ S+Q +Q K
Sbjct: 812 TNLPKKKKEEKTSSQGEQLK 831
>sp|B9E1Z0|MUTS_CLOK1 DNA mismatch repair protein MutS OS=Clostridium kluyveri (strain
NBRC 12016) GN=mutS PE=3 SV=1
Length = 871
Score = 218 bits (554), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 178/620 (28%), Positives = 300/620 (48%), Gaps = 76/620 (12%)
Query: 172 FLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPIL 231
+L +D + L+I ++ + G S+ G+++K T MG R LR W +P++
Sbjct: 261 YLTIDINSKRNLEIVESLRESKKKG--------SLLGVIDKTNTSMGGRQLRKWIEQPLI 312
Query: 232 DLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKS 291
D + RL+++ L + L E LK + DI + K +S S A + + S
Sbjct: 313 DRNKIMERLDSVEEILNNICYHEDLKEALKNIYDIERLAGKISSKSV--NAKELNSLKSS 370
Query: 292 ICSLLHVNKI---FEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNR 348
I + + I FE + +++ + L EL +Y L+ I N
Sbjct: 371 IEKIPDIKVILSNFETSLLKNMYKNL----------------DELKDIYMLLDKAILDNP 414
Query: 349 SKEKGYGTLVREGFCDELDELRQIYEELPEFLE--EVASLELVQLPHLCKEMFVPCIVYI 406
S G L++EG+ E+D L++ + +++ E + EL ++ L I Y
Sbjct: 415 SVSLKEGNLIKEGYDSEIDRLKEAKVKGKDWIASLESSERELTKIKSLK-------IGYN 467
Query: 407 HQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKI 466
GY + ++ + L + + +R Y TP+ +E+++ + K+
Sbjct: 468 KVFGYYI-----EVTKSNLNLVPEHRYIRKQTLSNAER--YITPELKEMEDKILGAEEKL 520
Query: 467 LDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDI 526
+ +E ++ + + + +E+DC SLA A +NNY +P +TL + I
Sbjct: 521 IYLEYNAFVEVRDKVEKEVTRIQNSARIISEVDCLTSLARAALENNYCKPEITLSDRVYI 580
Query: 527 QNGRHVLQEMTVDT--FIPNDTRIDN-DGRINIITGPNYSGKSIYIKQVALIVFLSHIGS 583
+ GRH + E + T F+ NDT ID + ++ +ITGPN +GKS Y++QVAL+ ++ IGS
Sbjct: 581 EEGRHPVVENMLSTGEFVSNDTDIDTGENQLLLITGPNMAGKSTYMRQVALVTIMAQIGS 640
Query: 584 FVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKG 635
FVPA +A++ + D S + + +S+FM+++ +V +L+ AT++SL LLDE G+G
Sbjct: 641 FVPAKSASISICDKIFTRIGASDDLASGKSTFMVEMWEVSNILKNATNKSLILLDEVGRG 700
Query: 636 TLTEDGIGLLGGTINYFV-TCDVPPKVLVCTHLTELLN-EGCLPKSERLKFYTMSVLRPE 693
T T DG+ + I Y + K L TH EL EG K + +K Y +SV E
Sbjct: 701 TSTYDGLSIAWSVIEYICRESKLRCKTLFATHYHELTKLEG---KIKGVKNYCVSVKEVE 757
Query: 694 NNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERWSH 753
NN IVFL +++ G A SYG+ A LAG+P EV+KRA +L + + K E
Sbjct: 758 NN------IVFLRKIIRGGADQSYGIEVAKLAGLPEEVLKRAREILNSLETEKTEESMEG 811
Query: 754 ENI---------SAQDQQYK 764
N+ S+Q +Q K
Sbjct: 812 TNLPKKKKEEKTSSQGEQLK 831
>sp|Q3ZYA0|MUTS_DEHSC DNA mismatch repair protein MutS OS=Dehalococcoides sp. (strain
CBDB1) GN=mutS PE=3 SV=1
Length = 858
Score = 217 bits (553), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 183/639 (28%), Positives = 311/639 (48%), Gaps = 90/639 (14%)
Query: 130 VRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQTD 189
+ A+G LL LE E +L+Q E + T D ++++D+ L+IF++
Sbjct: 227 ISAAGALLNYLE-ETQKSSLKQLERLSVYTTAD---------YMQMDSHTLSNLEIFRSS 276
Query: 190 KHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCS 249
S G S+ G++++ T MG RLLR + +P+L ++ RL+A+ +F
Sbjct: 277 GGNSLKG--------SLLGILDQTKTAMGGRLLRKFLGQPLLKQSDIEKRLSAVDYFFEE 328
Query: 250 EELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEV----- 304
SL ++L + D+ + + + + + + S+ ++ +++ F +
Sbjct: 329 SLARTSLAKSLGQIADMERMANRIRQKTIL--PRELISLKNSLETVSAIHRQFGLMPPPR 386
Query: 305 ------GISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLV 358
G+ + L E L ++N I + S + G G ++
Sbjct: 387 LAYFLNGL-KPLPEMLDIINKTITDDPPSTL-----------------------GDGKVI 422
Query: 359 REGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCIFEE 418
R GF E+D+L + + FL ++ + E + K + + Y GY + I
Sbjct: 423 RAGFDPEMDKLCSLAGDARTFLSQMETRERERTG--IKSL---KLGYNRVFGYYIEISNA 477
Query: 419 KLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLV 478
L D E ++ ++ + TP+ +E +NL+ + ++L+ME + ++
Sbjct: 478 NLGDVPPEFIRKQTLVNAER--------FITPELKEYENLILNAKERLLEMETGLYEQVL 529
Query: 479 SHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRH--VLQEM 536
+ + F LL A LD + A VA +N+Y+RP+ E LDI+ GRH V Q +
Sbjct: 530 NQLGGFYSALLANATALAALDVLSAFAEVAVRNSYVRPVFHPENRLDIRKGRHPMVEQGL 589
Query: 537 TVDTFIPNDTRID-NDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLT 595
+F+ ND + D +I I+TGPN +GKS Y+KQ ALIV ++ IGS+VPA+ A + LT
Sbjct: 590 GYGSFVANDISLSAEDCQIIILTGPNMAGKSTYLKQTALIVLMAQIGSYVPAETAELCLT 649
Query: 596 D--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGG 647
D + ++A QS+FM+++ + +L ATS+SL +LDE G+GT T DG+ +
Sbjct: 650 DRIFTRIGAREDLSAGQSTFMVEMVETASILNTATSRSLLILDEIGRGTSTYDGLAIAQA 709
Query: 648 TINYFVT-CDVPPKVLVCTHLTELLN-EGCLPKSERLKFYTMSVLRPENNSTDVEDIVFL 705
+ Y + + K L TH EL+ LP R+K Y ++V S D ++VFL
Sbjct: 710 VVEYIHSQPSLTAKTLFATHYHELVELASYLP---RVKNYNIAV------SEDRGEVVFL 760
Query: 706 YRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQN 744
+++VPG SYG+H A LAG+P VIKRA VL +N
Sbjct: 761 HKIVPGGVDKSYGIHVAKLAGLPKWVIKRAYEVLTELEN 799
>sp|Q12VC9|MUTS_METBU DNA mismatch repair protein MutS OS=Methanococcoides burtonii
(strain DSM 6242) GN=mutS PE=3 SV=1
Length = 887
Score = 217 bits (553), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 175/591 (29%), Positives = 294/591 (49%), Gaps = 65/591 (10%)
Query: 205 SVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVK 264
S+ +++ TPMG RLL+ W L+P++++++++ RL+A+ L + L +VK
Sbjct: 294 SILKVLDDTNTPMGGRLLQKWLLKPLINVDSIDHRLDALECLANDTMLRFDVRSHLSFVK 353
Query: 265 DIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQL-----RLLNF 319
DI ++ + +Y S+ + SL V +I E + E L LL F
Sbjct: 354 DIERLIGRV-----VYGNSNARDLIALKRSLGSVPQIVESMGDDPGCEMLINIRDGLLGF 408
Query: 320 DIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEF 379
+ +E I + A V E + + + G ++R G+ ++LDEL+ + +
Sbjct: 409 EQLENIVKLI--DDAIVDEPPVSVRE---------GGMIRSGYNEKLDELKGMSTGGKTW 457
Query: 380 LEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCIFEEKL----DDTTLEQLQGFEFAF 435
+AS + + + + Y GY + I + + DD +Q
Sbjct: 458 ---IASFQQKERDRTGIKSL--KVGYNRVFGYYIEITKSNIAQIPDDYIRKQTM------ 506
Query: 436 SDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFA 495
FY TP+ +E ++++ KI +E + ++ S I + L +
Sbjct: 507 -----RNAERFY-TPELKEWEDVILSADEKITALENELFTEITSRIASHASDLQRIAVLI 560
Query: 496 AELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTV-DTFIPNDTRID-NDGR 553
+LDC SLA VA NN++RP +T + + I+ GRH + E TV F+PNDT +D D +
Sbjct: 561 GQLDCTASLAEVAVNNNFVRPNITSDCKILIREGRHPVVEKTVRGGFVPNDTEMDCVDEQ 620
Query: 554 INIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS--------KHMTAEQS 605
+ITGPN +GKS Y++QV+LIV ++ GSFVPA A++G+ D + + QS
Sbjct: 621 FLLITGPNMAGKSTYMRQVSLIVIMAQAGSFVPASHASIGIVDRVFTRVGAFDDLASGQS 680
Query: 606 SFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYF-VTCDVPPKVLVC 664
+FM+++ ++ +L AT +SL LLDE G+GT T DG + + Y V + L
Sbjct: 681 TFMVEMVELANILNNATPKSLVLLDEIGRGTSTYDGYSIAKAVVEYIHNKGRVGVRSLFA 740
Query: 665 THLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALL 724
TH +L N K R+K Y ++V D +D+VFL ++VPG SYG+H A L
Sbjct: 741 THYHQLTNISSSLK--RVKNYHIAV------KEDGDDLVFLRKIVPGATDKSYGIHVARL 792
Query: 725 AGVPAEVIKRAAYVLEAAQNNKHVERWSHENISAQDQQYKNA-VEKMLAFD 774
AGVP +V +RA VL+ ++ + S E+ S + ++ K+A +++ FD
Sbjct: 793 AGVPHKVTQRAKEVLQDIEDESVI---SKESDSKRGRKKKSAQYTQLMLFD 840
>sp|P61667|MUTS_GEOSL DNA mismatch repair protein MutS OS=Geobacter sulfurreducens
(strain ATCC 51573 / DSM 12127 / PCA) GN=mutS PE=3 SV=1
Length = 871
Score = 216 bits (549), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 164/595 (27%), Positives = 281/595 (47%), Gaps = 62/595 (10%)
Query: 170 NKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRP 229
+FL LD ++ L++ T IG K S+ G++++ VT MG R L+ W P
Sbjct: 265 QEFLVLDESSRRNLELNAT--------IGDGKRRGSLLGLLDRTVTAMGGRKLKQWINYP 316
Query: 230 ILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFL 289
++ +E +N RL+A+ + E + L V D+ + + + S +A D A
Sbjct: 317 LVSIEKINERLDAVEELVADAEFRQGVRAALDGVYDLERLNGRISLAS--ASAKDLVALR 374
Query: 290 KSICSLLHVNKIFEVGIS---ESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDV 346
S+ L + + S LR+ + LL D+ E I + +V
Sbjct: 375 ASLVRLPSLIALLTPAASTLLARLRDGIDLLA-DVEELIGRGIVPDPPFVLR-------- 425
Query: 347 NRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYI 406
G ++ +G+ ELDELR I E F+ + + E + + + Y
Sbjct: 426 -------EGGIIAQGYHSELDELRSISREGKGFIARLEAQEKAR-----TGISSLKVRYN 473
Query: 407 HQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKI 466
GY + + + L + ++ A ++ + TP+ +E + + +I
Sbjct: 474 KVFGYYIEVTKSNLSAIPDDYIRRQTLANAER--------FITPELKEYEEKVLGAEDRI 525
Query: 467 LDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDI 526
+++E A+ +D+ + + + + + A LD +LA VAH + Y+RP + + +
Sbjct: 526 VELEYALFQDIRQRVAAQGERIARTADRLATLDVLAALADVAHDHRYVRPTVDEGDAIVV 585
Query: 527 QNGRHVLQEM--TVDTFIPNDTRIDN-DGRINIITGPNYSGKSIYIKQVALIVFLSHIGS 583
GRH + E + F+ ND ++DN + ++ IITGPN +GKS +++QVALIV ++ GS
Sbjct: 586 TGGRHPVVEALNRSERFVANDVQLDNGENQLVIITGPNMAGKSTFMRQVALIVLMAQTGS 645
Query: 584 FVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKG 635
FVPAD A++G+ D S ++ QS+FM+++ + +LR AT +SL +LDE G+G
Sbjct: 646 FVPADEASIGVVDRIFTRVGASDNLARGQSTFMVEMMETAAILRNATPRSLVVLDEIGRG 705
Query: 636 TLTEDGIGLLGGTINYF-VTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPEN 694
T T DG+ + Y T K L TH EL R + +V E
Sbjct: 706 TSTFDGVSIAWAVAEYLHDTERCAAKTLFATHYHELTELAVT----RNRVKNCNVAVKEW 761
Query: 695 NSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVE 749
N + ++FL ++V G A SYG+ A LAG+P EVI+RA +L + ++ E
Sbjct: 762 N----DQVIFLRKIVEGGASHSYGIQVARLAGLPQEVIERAKEILHNLEKGEYAE 812
>sp|Q3Z767|MUTS_DEHE1 DNA mismatch repair protein MutS OS=Dehalococcoides ethenogenes
(strain 195) GN=mutS PE=3 SV=1
Length = 858
Score = 216 bits (549), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 186/628 (29%), Positives = 310/628 (49%), Gaps = 68/628 (10%)
Query: 130 VRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQTD 189
V A+G LL LE E +L+Q ++ + +++ ++++D+ L+IF++
Sbjct: 227 VSAAGALLNYLE-ETQKSSLKQ---------LERLAAYTISDYMQIDSHTLSNLEIFRSS 276
Query: 190 KHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCS 249
S G S+ G++++ T MG RLLR + +P+L E++ RL+A+ +F
Sbjct: 277 GGNSLKG--------SLLGVLDQTKTAMGGRLLRKFLGQPLLRQEDIEKRLSAVDYFFEE 328
Query: 250 EELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISES 309
ASL + L + D+ I + + + + + S+ ++ +++ F
Sbjct: 329 SLARASLAKALGQIADMERIANRIRQKTIL--PKELISLKNSLETVSAIHRQF------G 380
Query: 310 LREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDEL 369
L RL F K L + ++V I+ + G G ++R GF E+D+L
Sbjct: 381 LMPPPRLAYFLNGLKP-------LPEMLDIVNEAINDDPPSTLGEGKVIRSGFNPEMDKL 433
Query: 370 RQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQ 429
+ + FL ++ + E Q K + + Y GY + + L D Q
Sbjct: 434 CSLAGDARTFLSQMEAREREQTG--IKSL---KLGYNRVFGYYIEVSNANLADIP----Q 484
Query: 430 GFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLL 489
+ + ++ E + TP+ +E +NL+ + ++L+ME + +++ + F LL
Sbjct: 485 NYIRKQTLVNAER----FITPELKEYENLILNAKERLLEMETGLYEQVLNQLGGFYSALL 540
Query: 490 KAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRH--VLQEMTVDTFIPNDTR 547
A LD + A VA +N Y+RP+ E L I GRH V Q + +F ND
Sbjct: 541 SNAAALASLDVLSAFAEVAVRNGYVRPLFHSENSLVIHRGRHPMVEQGLGYGSFAANDIS 600
Query: 548 ID-NDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD--------SK 598
+ D +I I+TGPN +GKS Y+KQ ALIV ++ IGS+VPA+ A + LTD +
Sbjct: 601 LSAEDCQIIILTGPNMAGKSTYLKQTALIVLMAQIGSYVPAETAELCLTDRIFSRIGARE 660
Query: 599 HMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVT-CDV 657
++A QS+FM+++ + +L ATS+SL +LDE G+GT T DG+ + + Y + +
Sbjct: 661 DLSAGQSTFMVEMVETASILNTATSRSLLILDEIGRGTSTYDGLAIAQAVVEYIHSQPSL 720
Query: 658 PPKVLVCTHLTELLN-EGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLS 716
K L TH EL+ LP R+K Y ++V S D ++VFL+R+VPG S
Sbjct: 721 HAKTLFATHYHELVELANYLP---RVKNYNIAV------SEDRGEVVFLHRIVPGGVDKS 771
Query: 717 YGLHCALLAGVPAEVIKRAAYVLEAAQN 744
YG+H A LAG+P VIKRA VL +N
Sbjct: 772 YGIHVAKLAGLPGWVIKRAYEVLTELEN 799
>sp|A6TR79|MUTS_ALKMQ DNA mismatch repair protein MutS OS=Alkaliphilus metalliredigens
(strain QYMF) GN=mutS PE=3 SV=1
Length = 880
Score = 215 bits (548), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 178/615 (28%), Positives = 301/615 (48%), Gaps = 65/615 (10%)
Query: 168 SLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFL 227
S+++ + LD + L++ +T + S G S+ G+++K T MG R+LR W
Sbjct: 266 SIHEKMTLDINTRKNLELTETIRSKSKKG--------SLLGVLDKTSTAMGGRMLRKWIE 317
Query: 228 RPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTA 287
P++D +N RL A+ EL L E+LK + D+ + K + S T D A
Sbjct: 318 APLIDPVIINKRLEAVQLLKEQIELRQELKESLKKIYDLERLAGKISYGSV--TPRDLIA 375
Query: 288 FLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVN 347
S+ L + E E+ + ++ + D +++ S + EL+ + + + D
Sbjct: 376 LKNSLSYLPSIINGLEKIQGETFQSLVQ--SIDPLDEVHSLV--ELSILEDAPLSSKD-- 429
Query: 348 RSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIH 407
G +++EG+ E+DEL+ E ++ +A LE Q + + I Y
Sbjct: 430 -------GGIIQEGYHKEVDELKNASTEGRQW---IAQLE--QKERVNSGIKSLKIKYNK 477
Query: 408 QIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKIL 467
GY + I + L E ++ A + Y TP+ +E+++ + K++
Sbjct: 478 IFGYYIEITKSNLSMVPTEYIRKQTLANCER--------YVTPELKEIESKILGAEEKVI 529
Query: 468 DMERAI---TRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLL 524
+E + R+ ++H +A+ AELD S A +A +NN+++P + +
Sbjct: 530 LLEYHLFIEVREKIAHEITRIQQTARAI---AELDVLYSFAEIAAENNFIKPHINTSNEI 586
Query: 525 DIQNGRHVLQEMTVD--TFIPNDTRIDN-DGRINIITGPNYSGKSIYIKQVALIVFLSHI 581
I GRH + E+T + +F+PNDT +DN D ++IITGPN +GKS Y++QVALIV ++ I
Sbjct: 587 KIVEGRHPVVELTFNKESFVPNDTYMDNRDCSMSIITGPNMAGKSTYMRQVALIVLMAQI 646
Query: 582 GSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFG 633
GSFVPA A++G+ D S + S+FM+++ ++ +L AT+ SL +LDE G
Sbjct: 647 GSFVPASEASIGIVDRIFTRIGASDDLAQGHSTFMVEMSEMANILNNATANSLVILDEIG 706
Query: 634 KGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN-EGCLPKSERLKFYTMSVLRP 692
+GT T DG+ + I Y K L TH EL EG K + +K Y + V
Sbjct: 707 RGTSTFDGLSIAWAVIEYMQQYK-KSKTLFSTHYHELTELEG---KIQGVKNYNILV--- 759
Query: 693 ENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVL-EAAQNNKHVERW 751
D E+IVFL ++V G SYG+ A LAG+P + RA +L + + N ++
Sbjct: 760 ---EEDGEEIVFLRKVVSGSTSKSYGIQVAKLAGLPLNTLIRAQEILSDLEKKNNEIKIP 816
Query: 752 SHENISAQDQQYKNA 766
+ E I+ + N+
Sbjct: 817 AEEEIALSRESEGNS 831
>sp|Q64MG7|MUTS_BACFR DNA mismatch repair protein MutS OS=Bacteroides fragilis (strain
YCH46) GN=mutS PE=3 SV=1
Length = 862
Score = 215 bits (547), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 181/637 (28%), Positives = 305/637 (47%), Gaps = 89/637 (13%)
Query: 132 ASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQTDKH 191
ASG +L L D E + G+ I S+ + +K+++LD +L++ +
Sbjct: 225 ASGAILQYL------DMTEHTQVGH----ITSLARIEEDKYVRLDKFTVRSLELIGS--- 271
Query: 192 PSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEE 251
M G G S+ +++K ++PMG RLL+ W + P+ D + +N RLN + +F +
Sbjct: 272 ---MNDG----GSSLLHVIDKTISPMGARLLKRWMVFPLKDEKPINDRLNVVEYFFRKPD 324
Query: 252 LMASLHETLKYVKDIPHILKKFN----SPSFIY---TASDWTAFLKSICSLLHVNKIFEV 304
+ + L + D+ I+ K SP + A +K C + +
Sbjct: 325 FRELIEDELHRIGDLERIISKVAVGRVSPREVVQLKVALQAIEPIKEACQQADNPSLNRI 384
Query: 305 GISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCD 364
G EQL L I ++ I + + +N+ G ++++G
Sbjct: 385 G------EQLNLC-ISIRDRIEKEINNDPPLL---------INK------GGVIKDGVDT 422
Query: 365 ELDELRQIYEELPEFLEEVASLE--LVQLPHLCKEMFVPCIVYIHQIGYLMCIFEEKLDD 422
ELDELRQI ++L ++ E L +P L I Y GY + + D
Sbjct: 423 ELDELRQIAYSGKDYLLKIQQRESELTGIPSLK-------IAYNSVFGYYIEVRNVHKDK 475
Query: 423 TTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHIC 482
E ++ ++ Y T + +E + + KIL +E + +LV +
Sbjct: 476 VPQEWIRKQTLVNAER--------YITQELKEYEEKILGAEDKILVLETRLYTELVQALS 527
Query: 483 LFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTV---D 539
F + N A +DC LS A VA +NNY+RP++ +LDI+ GRH + E + +
Sbjct: 528 EFIPAIQINANQIARIDCLLSFANVAKENNYIRPVIEDNDVLDIRQGRHPVIEKQLPIGE 587
Query: 540 TFIPNDTRIDN-DGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD-- 596
+I ND +DN ++ IITGPN +GKS ++Q ALI L+ IGSFVPA++A +GL D
Sbjct: 588 KYIANDVLLDNATQQVIIITGPNMAGKSALLRQTALITLLAQIGSFVPAESAHIGLVDKI 647
Query: 597 ------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTIN 650
S +++ +S+FM+++++ +L +S+SL L DE G+GT T DGI + +
Sbjct: 648 FTRVGASDNISVGESTFMVEMNEASDILNNISSRSLVLFDELGRGTSTYDGISIAWAIVE 707
Query: 651 YFVT-CDVPPKVLVCTHLTELLNEGCLPKS-ERLKFYTMSVLRPENNSTDVEDIVFLYRL 708
Y + L TH E LNE + KS +R+K Y +SV +N ++FL +L
Sbjct: 708 YIHEHPKAKARTLFATHYHE-LNE--MEKSFKRIKNYNVSVKEVDNK------VIFLRKL 758
Query: 709 VPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNN 745
G + S+G+H A +AG+P ++KRA +L+ +++
Sbjct: 759 ERGGSEHSFGIHVAKMAGMPKSIVKRANEILKQLESD 795
>sp|Q8A334|MUTS_BACTN DNA mismatch repair protein MutS OS=Bacteroides thetaiotaomicron
(strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 /
VPI-5482) GN=mutS PE=3 SV=1
Length = 862
Score = 215 bits (547), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 176/608 (28%), Positives = 296/608 (48%), Gaps = 79/608 (12%)
Query: 161 IDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRR 220
I S+ + +K+++LD +L++ + M G G S+ ++++ ++PMG R
Sbjct: 244 ITSLARIEEDKYVRLDKFTVRSLELIGS------MNDG----GSSLLNVIDRTISPMGAR 293
Query: 221 LLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFN----SP 276
LL+ W + P+ D + +N RLN + +F + + E L + D+ I+ K SP
Sbjct: 294 LLKRWMVFPLKDEKPINDRLNVVEYFFRQPDFKELIEEQLHLIGDLERIISKVAVGRVSP 353
Query: 277 SFIY---TASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTEL 333
+ A +K C + +G EQL L I ++ A I +
Sbjct: 354 REVVQLKVALQAIEPIKQACLEADNASLNRIG------EQLNLC-ISIRDRIAKEINNDP 406
Query: 334 AYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQ--L 391
+ +N+ G ++++G +ELDELR+I ++L ++ E Q +
Sbjct: 407 PLL---------INK------GGVIKDGVNEELDELRRISYSGKDYLLQIQQRESEQTGI 451
Query: 392 PHLCKEMFVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPK 451
P L + Y + GY + + D E ++ +R K
Sbjct: 452 PSLK-------VAYNNVFGYYIEVRNIHKDKVPQEWIRKQTLV------NAERYITQELK 498
Query: 452 TRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQN 511
E + +LG KIL +E + DLV + F + N A LDC LS A VA +N
Sbjct: 499 VYE-EKILG-AEDKILVLETQLYTDLVQALTEFIPQIQINANQIARLDCLLSFANVAREN 556
Query: 512 NYMRPILTLEPLLDIQNGRHVLQEMTV---DTFIPNDTRIDNDG-RINIITGPNYSGKSI 567
NY+RP++ +LDI+ GRH + E + + +I ND +D+ +I IITGPN +GKS
Sbjct: 557 NYIRPVIEDNDVLDIRQGRHPVIEKQLPIGEKYIANDVMLDSASQQIIIITGPNMAGKSA 616
Query: 568 YIKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLR 619
++Q ALI L+ IGSFVPA++A +GL D S +++ +S+FM+++++ +L
Sbjct: 617 LLRQTALITLLAQIGSFVPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNEAADILN 676
Query: 620 QATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVT-CDVPPKVLVCTHLTELLNEGCLPK 678
+S+SL L DE G+GT T DGI + + Y + L TH E LNE + K
Sbjct: 677 NVSSRSLVLFDELGRGTSTYDGISIAWAIVEYIHEHPKAKARTLFATHYHE-LNE--MEK 733
Query: 679 S-ERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAY 737
S +R+K Y +SV +N ++FL +L G + S+G+H A +AG+P ++KRA
Sbjct: 734 SFKRIKNYNVSVKEVDNK------VIFLRKLERGGSEHSFGIHVAKMAGMPKSIVKRANT 787
Query: 738 VLEAAQNN 745
+L+ +++
Sbjct: 788 ILKQLESD 795
>sp|Q67NK1|MUTS_SYMTH DNA mismatch repair protein MutS OS=Symbiobacterium thermophilum
(strain T / IAM 14863) GN=mutS PE=3 SV=1
Length = 875
Score = 215 bits (547), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 169/581 (29%), Positives = 287/581 (49%), Gaps = 61/581 (10%)
Query: 205 SVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVK 264
++ +M++ VT MG RLL++W RP+LDL +++R A+ + L A L L+ V
Sbjct: 296 TLLWVMDRTVTAMGARLLKSWLERPLLDLRQIHARHEAVGELVHRPVLRADLRALLQEVH 355
Query: 265 DIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISE---SLREQLRLLN--F 319
D+ + + S A D A +S+ +L + E +E LR+QL +L+
Sbjct: 356 DLERLAGRVAVGS--ANARDLVALKQSLVALPSIRVALEDVRAERLVELRDQLDMLDDVR 413
Query: 320 DIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEF 379
D++E A + E + + + G ++++GF E+DELR+I + +
Sbjct: 414 DLIEHAIAD---------EPPVALTE---------GGILKDGFHPEVDELRRIARDGKAW 455
Query: 380 LEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMD 439
+ +V + E + K + I Y GY + + + L + ++ A +
Sbjct: 456 IAQVEARERERTG--IKSL---KIGYNKVFGYYLAVTKPNLPLVPPDYIRKQTLANEER- 509
Query: 440 GETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELD 499
+ TP+ +EL+ + +++D+E + ++ + + ++ AELD
Sbjct: 510 -------FITPELKELEEKVLHAAERVMDLEYELFVEIRQRVAAEVTRIQRSARAVAELD 562
Query: 500 CFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQE--MTVDTFIPNDTRID-NDGRINI 556
S A VA Y RP++ +L+++ RH + E M F+PND +D + R+ +
Sbjct: 563 ALASFAEVASLYGYCRPLVDGSTVLELKGSRHPVLERVMEEGAFVPNDLLVDTGENRVLL 622
Query: 557 ITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFM 608
ITGPN GKS ++Q AL V L+ GSFVPA++A +GL D S + +S+FM
Sbjct: 623 ITGPNMGGKSTVMRQAALAVILAQAGSFVPAESAHIGLVDRVFTRVGASDDLATGRSTFM 682
Query: 609 IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLT 668
+++ +V +L AT +SL +LDE G+GT T DG+ + I + + + L TH
Sbjct: 683 VEMTEVANILHSATERSLVVLDEVGRGTATFDGLS-IAWAITEHIHQAIGCRTLFATHYH 741
Query: 669 ELLN-EGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGV 727
EL EG LP +K Y+++V+ EDI+FL +LV G A SYG+ LAG+
Sbjct: 742 ELCELEGILPG---VKNYSVAVME------KGEDIIFLRKLVRGGADRSYGIQVGRLAGL 792
Query: 728 PAEVIKRAAYVLEAAQNNKHVERWSHENISAQDQQYKNAVE 768
PA V++RA +L A + ER S +AQ + + AV+
Sbjct: 793 PASVVERAREIL-ATLEEQEGERKSRREAAAQRLRRQPAVQ 832
>sp|Q5L7B7|MUTS_BACFN DNA mismatch repair protein MutS OS=Bacteroides fragilis (strain
ATCC 25285 / NCTC 9343) GN=mutS PE=3 SV=1
Length = 879
Score = 215 bits (547), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 181/637 (28%), Positives = 305/637 (47%), Gaps = 89/637 (13%)
Query: 132 ASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQTDKH 191
ASG +L L D E + G+ I S+ + +K+++LD +L++ +
Sbjct: 242 ASGAILQYL------DMTEHTQVGH----ITSLARIEEDKYVRLDKFTVRSLELIGS--- 288
Query: 192 PSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEE 251
M G G S+ +++K ++PMG RLL+ W + P+ D + +N RLN + +F +
Sbjct: 289 ---MNDG----GSSLLHVIDKTISPMGARLLKRWMVFPLKDEKPINDRLNVVEYFFRKPD 341
Query: 252 LMASLHETLKYVKDIPHILKKFN----SPSFIY---TASDWTAFLKSICSLLHVNKIFEV 304
+ + L + D+ I+ K SP + A +K C + +
Sbjct: 342 FRELIEDELHRIGDLERIISKVAVGRVSPREVVQLKVALQAIEPIKEACQQADNPSLNRI 401
Query: 305 GISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCD 364
G EQL L I ++ I + + +N+ G ++++G
Sbjct: 402 G------EQLNLC-ISIRDRIEKEINNDPPLL---------INK------GGVIKDGVDT 439
Query: 365 ELDELRQIYEELPEFLEEVASLE--LVQLPHLCKEMFVPCIVYIHQIGYLMCIFEEKLDD 422
ELDELRQI ++L ++ E L +P L I Y GY + + D
Sbjct: 440 ELDELRQIAYSGKDYLLKIQQRESELTGIPSLK-------IAYNSVFGYYIEVRNVHKDK 492
Query: 423 TTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHIC 482
E ++ ++ Y T + +E + + KIL +E + +LV +
Sbjct: 493 VPQEWIRKQTLVNAER--------YITQELKEYEEKILGAEDKILVLETRLYTELVQALS 544
Query: 483 LFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTV---D 539
F + N A +DC LS A VA +NNY+RP++ +LDI+ GRH + E + +
Sbjct: 545 EFIPAIQINANQIARIDCLLSFANVAKENNYIRPVIEDNDVLDIRQGRHPVIEKQLPIGE 604
Query: 540 TFIPNDTRIDN-DGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD-- 596
+I ND +DN ++ IITGPN +GKS ++Q ALI L+ IGSFVPA++A +GL D
Sbjct: 605 KYIANDVLLDNATQQVIIITGPNMAGKSALLRQTALITLLAQIGSFVPAESAHIGLVDKI 664
Query: 597 ------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTIN 650
S +++ +S+FM+++++ +L +S+SL L DE G+GT T DGI + +
Sbjct: 665 FTRVGASDNISVGESTFMVEMNEASDILNNISSRSLVLFDELGRGTSTYDGISIAWAIVE 724
Query: 651 YFVT-CDVPPKVLVCTHLTELLNEGCLPKS-ERLKFYTMSVLRPENNSTDVEDIVFLYRL 708
Y + L TH E LNE + KS +R+K Y +SV +N ++FL +L
Sbjct: 725 YIHEHPKAKARTLFATHYHE-LNE--MEKSFKRIKNYNVSVKEVDNK------VIFLRKL 775
Query: 709 VPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNN 745
G + S+G+H A +AG+P ++KRA +L+ +++
Sbjct: 776 ERGGSEHSFGIHVAKMAGMPKSIVKRANEILKQLESD 812
>sp|Q045Q5|MUTS_LACGA DNA mismatch repair protein MutS OS=Lactobacillus gasseri (strain
ATCC 33323 / DSM 20243) GN=mutS PE=3 SV=1
Length = 857
Score = 214 bits (546), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 171/589 (29%), Positives = 279/589 (47%), Gaps = 71/589 (12%)
Query: 171 KFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPI 230
++L++ T L++ ++ K MG S+F +++K T MG RLL++W RP+
Sbjct: 252 QYLQMSHTVQTNLELIKSAKTSKKMG--------SLFWLLDKTSTAMGGRLLKSWIERPL 303
Query: 231 LDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKF-----NSPSFIYTASDW 285
L + + R + L + ++LK V D+ + + N+ + A
Sbjct: 304 LSVTEITRRQEMVQALLDDYFTREKVIDSLKGVYDLERLTGRIAFGSVNAREMLQLAHSL 363
Query: 286 TAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIID 345
A + SLL N L NF A I L +++L++ I
Sbjct: 364 GAIPDILNSLLETNNP-------------HLQNF------AKQIDP-LKGIHDLIVNTIV 403
Query: 346 VNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVAS--LELVQLPHLCKEMFVPCI 403
N G L+REG D+LD R ++L E+ S E+ + +L +
Sbjct: 404 DNPPLLTTEGGLIREGVSDQLDRYRDAMNNGKKWLSEMESHEREVTGINNLK-------V 456
Query: 404 VYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIY 463
Y GY + + D ++ ++ T Y TP +E ++L+ +
Sbjct: 457 GYNKVFGYYIEVTNSNKDKVPTDR-------YTRKQTLTNAERYITPDLKEHESLILEAE 509
Query: 464 HKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPL 523
K +E + L ++ + L K A LD + A V+ QNNY+RP T++
Sbjct: 510 AKSTGLEYDLFVKLRENVKKYIPALQKLAKQVASLDVLTNFATVSEQNNYVRPDFTVDKQ 569
Query: 524 -LDIQNGRH--VLQEMTVDTFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSH 580
+++ NGRH V Q MT ++IPND ++D D I +ITGPN SGKS Y++Q+ALI ++
Sbjct: 570 EINVVNGRHPVVEQVMTAGSYIPNDVKMDQDTDIFLITGPNMSGKSTYMRQMALIAIMAQ 629
Query: 581 IGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEF 632
IG FVPAD+AT+ + D + + + QS+FM+++ + L+ AT +SL L DE
Sbjct: 630 IGCFVPADSATLPIFDQIFTRIGAADDLISGQSTFMVEMSEANDALQHATKRSLVLFDEI 689
Query: 633 GKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLK-FYTMSVLR 691
G+GT T DG+ L G + Y + V K L TH EL + + LK + V
Sbjct: 690 GRGTATYDGMALAGAIVKY-LHDKVGAKTLFATHYHELTD-----LDQTLKHLKNIHVGA 743
Query: 692 PENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLE 740
E N ++FL++++PG A SYG+H A LAG+P +V++ A +L+
Sbjct: 744 TEENGK----LIFLHKILPGPADQSYGIHVAQLAGLPHKVLREATTMLK 788
>sp|Q12175|MSH5_YEAST MutS protein homolog 5 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=MSH5 PE=1 SV=1
Length = 901
Score = 213 bits (542), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 189/609 (31%), Positives = 290/609 (47%), Gaps = 67/609 (11%)
Query: 175 LDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLE 234
LD AL IF T H + R FSVF + N+ + RR+L++W + P+ + +
Sbjct: 249 LDENTISALHIFPTAHKLGHDKMMR-NGFFSVFELFNQVSSDYARRILKSWLINPLTNKK 307
Query: 235 NLNSRLNAISFFLCSEE--LMASLHETLKYVKDIPHILKKFNS-PSFIYTASDWTAFLKS 291
+ +R + I L + + + L +++K D + + S S + T S +FL+
Sbjct: 308 RIETRYSIIRTLLDKQNAIIFSDLSQSIKRCPDAFGFINQLRSGKSTLGTWSKVASFLEK 367
Query: 292 ICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKE 351
++ + ++G E+ +L+ DI K + L V +ID + S++
Sbjct: 368 GIAIFQLVSSLKLGSDEA-----NILH-DIKNKVD---ISALKECLRKVETVIDFDTSRD 418
Query: 352 KGYGTLVREGFCDELDELRQIYEELPEFLEEVAS----LELVQLPHL-CK-----EMFVP 401
T + G + LDE R IY L L +VA L +P CK E V
Sbjct: 419 TKTLT-INTGVDNRLDECRNIYNHLEGILLDVARETQIFLLNTMPQEDCKTTKSLEKLVN 477
Query: 402 CIVYIHQIGYLMCI---FEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNL 458
VYI Q+GYL+ I E LD + LQ E S ++ +++ + ELD
Sbjct: 478 A-VYIPQLGYLVTISVLMEPLLD--GIPNLQWEEIFRS-----SENIYFKNGRVLELDET 529
Query: 459 LGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPIL 518
GDIY I D E I L I L +EL+ LS A V+ + NY P L
Sbjct: 530 YGDIYGAISDFEIEILFSLQEQILRRKTQLTAYNILLSELEILLSFAQVSAERNYAEPQL 589
Query: 519 TL-EPLLDIQNGRHVLQEMTVDTFIPNDTRID------------NDGRINIITGPNYSGK 565
E +L+I NGRH L E +D +IPN T ID N GRI ++TG N SGK
Sbjct: 590 VEDECILEIINGRHALYETFLDNYIPNSTMIDGGLFSELSWCEQNKGRIIVVTGANASGK 649
Query: 566 SIYIKQVALIVFLSHIGSFVPADAATVGLTD---SKHMTAE-----QSSFMIDLHQVGMM 617
S+Y+ Q LIV+L+ IG FVPA+ A +G+ D ++ T E QSSF++D Q+
Sbjct: 650 SVYLTQNGLIVYLAQIGCFVPAERARIGIADKILTRIRTQETVYKTQSSFLLDSQQMAKS 709
Query: 618 LRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLP 677
L AT +SL L+DE+GKGT DG L G + + P+++ CTH EL NE L
Sbjct: 710 LSLATEKSLILIDEYGKGTDILDGPSLFGSIMLNMSKSEKCPRIIACTHFHELFNENVLT 769
Query: 678 KS-ERLKFYTMSVLRPE----------NNSTDVEDIVFLYRLVPGHALLSYGLHCALLAG 726
++ + +K Y +L + + E I FL+++ G + S+G++CA + G
Sbjct: 770 ENIKGIKHYCTDILISQKYNLLETAHVGEDHESEGITFLFKVKEGISKQSFGIYCAKVCG 829
Query: 727 VPAEVIKRA 735
+ ++++RA
Sbjct: 830 LSRDIVERA 838
>sp|A5FQC0|MUTS_DEHSB DNA mismatch repair protein MutS OS=Dehalococcoides sp. (strain
BAV1) GN=mutS PE=3 SV=1
Length = 858
Score = 212 bits (540), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 183/639 (28%), Positives = 311/639 (48%), Gaps = 90/639 (14%)
Query: 130 VRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQTD 189
+ A+G LL LE E +L+Q E + T D ++++D+ L+IF++
Sbjct: 227 ISAAGALLNYLE-ETQKSSLKQLERLSVYTTAD---------YMQMDSHTLSNLEIFRSS 276
Query: 190 KHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCS 249
S G S+ G++++ T MG RLLR + +P+L ++ RL+A+ +F
Sbjct: 277 GGNSLKG--------SLLGILDQTRTAMGGRLLRKFLGQPLLKQSDIEKRLSAVDYFFEE 328
Query: 250 EELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEV----- 304
SL ++L + D+ + + + + + + S+ ++ +++ F +
Sbjct: 329 SLARTSLAKSLGQIADMERMANRIRQKTIL--PRELISLKNSLETVSAIHRQFGLMPPPR 386
Query: 305 ------GISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLV 358
G+ + L E L ++N I + S + G G ++
Sbjct: 387 LAYFLNGL-KPLPEMLDIINKTITDDPPSTL-----------------------GDGKVI 422
Query: 359 REGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCIFEE 418
R GF E+D+L + + FL ++ + E + K + + Y GY + I
Sbjct: 423 RAGFDPEMDKLCSLAGDARTFLSQMETRERERTG--IKSL---KLGYNRVFGYYIEISNA 477
Query: 419 KLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLV 478
L D E ++ ++ + TP+ +E +NL+ + ++L+ME + ++
Sbjct: 478 NLGDMPPEFIRKQTLVNAER--------FITPELKEYENLILNAKERLLEMETGLYEQVL 529
Query: 479 SHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRH--VLQEM 536
+ + F LL A LD + A VA +N+Y+RP+ E LDI+ GRH V Q +
Sbjct: 530 NQLGGFYSALLANAAALAALDVLSAFAEVAVRNSYVRPVFHPENRLDIRKGRHPMVEQGL 589
Query: 537 TVDTFIPNDTRID-NDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLT 595
+F+ ND + D +I I+TGPN +GKS Y+KQ ALIV ++ IGS+VPA+ A + LT
Sbjct: 590 GYGSFVANDISLSAEDCQIIILTGPNMAGKSTYLKQTALIVLMAQIGSYVPAETAELCLT 649
Query: 596 D--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGG 647
D + ++A QS+FM+++ + +L ATS+SL +LDE G+GT T DG+ +
Sbjct: 650 DRIFTRIGAREDLSAGQSTFMVEMVETASILNTATSRSLLILDEIGRGTSTYDGLAIAQA 709
Query: 648 TINYFVT-CDVPPKVLVCTHLTELLN-EGCLPKSERLKFYTMSVLRPENNSTDVEDIVFL 705
+ Y + + K L TH EL+ LP R+K Y ++V S D ++VFL
Sbjct: 710 VVEYIHSQPSLTAKTLFATHYHELVELASYLP---RVKNYNIAV------SEDRGEVVFL 760
Query: 706 YRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQN 744
+++VPG SYG+H A LAG+P VIKRA VL +N
Sbjct: 761 HKIVPGGVDKSYGIHVAKLAGLPKWVIKRAYEVLTELEN 799
>sp|Q3ACA5|MUTS_CARHZ DNA mismatch repair protein MutS OS=Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008) GN=mutS PE=3
SV=1
Length = 841
Score = 211 bits (538), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 169/586 (28%), Positives = 284/586 (48%), Gaps = 64/586 (10%)
Query: 169 LNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLR 228
++ +L D + + L+I + R S+ G+++ T MG R L+ +
Sbjct: 243 IDSYLYFDESTRKNLEILRN----------REDNSSSLLGIIDFTQTAMGARKLKEELTK 292
Query: 229 PILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAF 288
P+L+L+ + RL+A+ + EL +L E LK + D+ + K + D
Sbjct: 293 PLLNLKAIADRLDAVEILVNDYELRENLRENLKNLYDLERLSIKLVCGTI--NPKDLIKI 350
Query: 289 LKSICSLLHV-NKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVN 347
+S+ + H+ N I V N ++ E+ VY L+ I +
Sbjct: 351 KQSLPQIWHIKNSINHVK------------NKSVLFAEIYKNLPEMREVYNLIDKSIVDD 398
Query: 348 RSKEKGYGTLVREGFCDELDELRQIYEELPEFL--EEVASLELVQLPHLCKEMFVPCIVY 405
G +++ G+ +DE R+ EE +++ E E + L + Y
Sbjct: 399 PPVSPKDGGIIKNGYNPTVDEYRKAREEGQDWIINYEKKERERTGIKSLK-------VNY 451
Query: 406 IHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHK 465
GY + + + L L ++ +R T + + +NL+ K
Sbjct: 452 NKVFGYFIEVTKANL------HLVPADYQRKQTMVNAERFI--TEELKHYENLILGASEK 503
Query: 466 ILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLD 525
+ ++E + ++ S I + + L +A + A LD +SLA+ A + ++ RP++T EP+L+
Sbjct: 504 LANLEYELFCEIRSEILKYQEDLKRAASAVALLDFLISLAVAAIEYDFTRPVITAEPVLE 563
Query: 526 IQNGRHVLQEMTVD--TFIPNDTRID-NDGRINIITGPNYSGKSIYIKQVALIVFLSHIG 582
I+NGRH + E +V F+PND +D + + +ITGPN +GKS Y++Q ALIV L+ IG
Sbjct: 564 IKNGRHPVVEKSVGRANFVPNDLYLDTKENSLLLITGPNMAGKSTYMRQAALIVILAQIG 623
Query: 583 SFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGK 634
SFVPA+ A VGL D + + QS+FM+++ + +LR ATS+SL LLDE G+
Sbjct: 624 SFVPAEYARVGLVDKILTRIGATDDLAKGQSTFMVEMIECNNILRNATSRSLILLDEVGR 683
Query: 635 GTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN-EGCLPKSERLKFYTMSVLRPE 693
GT T DGI + I Y + + + L TH EL EG +P + +VL E
Sbjct: 684 GTSTYDGISIAEAIIEY-IQKKIKARTLFSTHYHELTGLEGEIPGVK-----NFTVLVQE 737
Query: 694 NNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVL 739
E++ FL+++VPG SYG++ A LAG+P EV++RA +L
Sbjct: 738 KG----EEVKFLHKVVPGKTDKSYGIYVAKLAGLPREVVERAYEIL 779
>sp|Q24X61|MUTS_DESHY DNA mismatch repair protein MutS OS=Desulfitobacterium hafniense
(strain Y51) GN=mutS PE=3 SV=1
Length = 862
Score = 211 bits (537), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 168/572 (29%), Positives = 276/572 (48%), Gaps = 59/572 (10%)
Query: 198 GRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLH 257
G+ K+G ++ +++ T G RLLR W +P+L + RL+ + + L L
Sbjct: 279 GQGKKG-TLLSVLDFTKTAFGGRLLRRWIEQPLLLKGEIEKRLDYVEALVEDSFLRGDLI 337
Query: 258 ETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLL 317
+ V D+ ++ K + + A D + +++ L + + G SE L+ + L
Sbjct: 338 QLFGKVYDLERLMGKVSYGT--ANARDLLSLAQTLGVLPQLRALLAEGKSEPLQAFIPAL 395
Query: 318 -NFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEEL 376
D + T E A E I + D G L++ G+ E+DELR I
Sbjct: 396 EGLDPL-----AATLEQAINPEAPISLKD---------GNLLKAGYSVEIDELRSISSGG 441
Query: 377 PEFLEEVASLE-----LVQLPHLCKEMFVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGF 431
++ ++ S+E + L ++F I H +L I E + TL + F
Sbjct: 442 KAWVAKLESMEKDRTGIRSLKVGYNKVFGYYIEVTHANSHL--IPAEYIRKQTLANAERF 499
Query: 432 EFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKA 491
TP+ +E + + K+ +E + +L + + +L+A
Sbjct: 500 ----------------ITPELKEYEQKILGAEEKVTQLEYQLFLELRETVRGQAAKILEA 543
Query: 492 VNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRH-VLQEMTVDT-FIPNDTRID 549
+ AE+D + SLA A +++Y RP++ E L I GRH V++ M DT F+PNDT +
Sbjct: 544 AHALAEIDVYTSLAEAAVRHHYSRPVMKGEGGLTIIEGRHPVVESMLQDTSFVPNDTILT 603
Query: 550 NDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMT 601
D + +ITGPN +GKS Y++QVALIV ++ IGSFVPA AT+ + D S +
Sbjct: 604 EDKHLALITGPNMAGKSTYMRQVALIVLMAQIGSFVPAQQATIPIADHIFTRVGASDDLA 663
Query: 602 AEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKV 661
+ QS+FM+++++V +LR T QSL +LDE G+GT T DG+ + Y + PK
Sbjct: 664 SGQSTFMVEMYEVAHILRHVTPQSLIILDEVGRGTATYDGLSIAWAVAEYLAGQENKPKT 723
Query: 662 LVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHC 721
L TH EL + L ++ F +R E+IVFL++++PG A SYG+
Sbjct: 724 LFATHYHELTD---LEETHSGIFNLHVGVREHG-----EEIVFLHKIIPGRADRSYGIQV 775
Query: 722 ALLAGVPAEVIKRAAYVLEAAQNNKHVERWSH 753
A LAG+PA ++ RA +L +++ R H
Sbjct: 776 AKLAGLPANLLHRAKIILHELESSAKESRQEH 807
>sp|A0Q0M6|MUTS_CLONN DNA mismatch repair protein MutS OS=Clostridium novyi (strain NT)
GN=mutS PE=3 SV=1
Length = 909
Score = 211 bits (537), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 170/587 (28%), Positives = 293/587 (49%), Gaps = 57/587 (9%)
Query: 172 FLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPIL 231
+L +D + L++ +T + S G S+ +++K T MG RLLR W +P++
Sbjct: 259 YLSIDINSRRNLELTETLRDKSKKG--------SLLWVLDKTTTAMGARLLRKWVEQPLI 310
Query: 232 DLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKS 291
E + +R NA+ L + L+ L LK V DI + K +S + A + + S
Sbjct: 311 HKEIIENRQNAVEEILNNVPLLDDLRNNLKDVYDIERLAGKISSKTV--NAKELLSLKNS 368
Query: 292 ICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKE 351
I +L + KI E N D+++ S + L +Y L+ I + +
Sbjct: 369 IGNLPIIKKIIEN------------YNTDLLKNIYSSLDC-LEDLYSLLDNSILPSPALS 415
Query: 352 KGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGY 411
G ++++G+ +DELR E+ +ASLE + + + Y GY
Sbjct: 416 IKEGGIIKDGYNKTIDELRMAKSHGTEW---IASLE--EQERNITGIKSLKVKYNKVFGY 470
Query: 412 LMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMER 471
+ I + + L Q+ + +R TP+ +E+++ + K++++E
Sbjct: 471 YIEITK-----SNLNQVPENRYIRKQTLANCERFI--TPELKEVEDKILGAQEKLMELEY 523
Query: 472 AITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRH 531
+ ++ I + + +D SLA+VA ++NY +PI+ L+ L I++GRH
Sbjct: 524 NVFVEIRELIEKEIYRIKNTAKLISSIDVLQSLAIVALESNYSKPIIKLDGELLIKDGRH 583
Query: 532 VLQEMTV--DTFIPNDTRIDN-DGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPAD 588
+ E + D+F+ NDT +DN D ++ +ITGPN +GKS Y++QVALI ++ IGSFVPA
Sbjct: 584 PVVEKMIPRDSFVSNDTILDNKDHQLLLITGPNMAGKSTYMRQVALITLMAQIGSFVPAK 643
Query: 589 AATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTED 640
A + + D S + +S+FM+++ +V +L AT++SL LLDE G+GT T D
Sbjct: 644 EAEIVICDKIFTRIGASDDLARGKSTFMVEMWEVANILNNATNKSLILLDEVGRGTSTYD 703
Query: 641 GIGLLGGTINYFVT-CDVPPKVLVCTHLTELLN-EGCLPKSERLKFYTMSVLRPENNSTD 698
G+ + I Y ++ K L TH EL + EG K + +K Y+++V + +
Sbjct: 704 GLSIAWAVIEYICKDNNLKSKTLFATHYHELTSLEG---KIKGVKNYSIAVKKVD----- 755
Query: 699 VEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNN 745
+DI+FL +++ G A SYG+ A LAG+P+ V RA +L + N
Sbjct: 756 -DDIIFLRKIIEGGADESYGIEVAKLAGIPSVVTNRAKEILNTLEEN 801
>sp|P73769|MUTS_SYNY3 DNA mismatch repair protein MutS OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=mutS PE=3 SV=2
Length = 878
Score = 211 bits (536), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 180/650 (27%), Positives = 296/650 (45%), Gaps = 75/650 (11%)
Query: 114 RICYLNSMMDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFL 173
R+ L M G + +RA+GGLL +E+ + + I + L FL
Sbjct: 251 RVKSLEGMGCEGLPLAIRAAGGLLEYIEDTQKAHV----------VPIQPLKTYGLTDFL 300
Query: 174 KLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDL 233
LD L+I QT + S G S+ +++ T MG R LR W L+P+LDL
Sbjct: 301 VLDHQTRRNLEINQTVRDGSFHG--------SLLWALDRTSTTMGSRALRRWLLQPLLDL 352
Query: 234 ENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSIC 293
+ + +R + I L L + L+ + D+ + + + + +A D S+
Sbjct: 353 KGIQARQDTIQELYHHPALRQDLRQLLRQIYDLERLTGRIGANT--ASARDVYGLASSLV 410
Query: 294 SLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKG 353
L + ++ + G S L KA + EL + + V+ I N
Sbjct: 411 RLTDLAELAQEGHSPYL-------------KALQTVPPELEELGKYVLAHIVENPPLHIR 457
Query: 354 YGTLVREGFCDELDELRQIYEELPEFLE--EVASLELVQLPHLCKEMFVPCIVYIHQIGY 411
G L+R G LDE+RQ E+ ++L EV E + +L + Y GY
Sbjct: 458 EGNLIRSGVNPTLDEMRQSLEDDNQWLANLEVTEREKTGIANLK-------VGYNKAFGY 510
Query: 412 LMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMER 471
+ + K EQ + E + Y TP+ +E + + + +E
Sbjct: 511 YLSLPRSKS-----EQAPDNYIRKQTLVNEER---YITPELKERETRILTAQADLNQLEY 562
Query: 472 AITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEP-LLDIQNGR 530
I ++ + + + + A +D LA VA Y RPI+ +EP L+DI+ GR
Sbjct: 563 EIFTEVRATVAEKAQPIRDVAKAVAAIDVLAGLAEVAVYQGYCRPIMQMEPGLIDIEAGR 622
Query: 531 H--VLQEMTVDTFIPNDTRIDND---GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFV 585
H V Q + F+ NDT++ +D + I+TGPN SGKS Y++QV LI ++ GSF+
Sbjct: 623 HPVVEQSLGAGFFVANDTQLGHDHWHPDLVILTGPNASGKSCYLRQVGLIQLMAQTGSFI 682
Query: 586 PADAATVGLTDS--------KHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTL 637
PA AT+ + D + QS+FM+++++ +L AT++SL LLDE G+GT
Sbjct: 683 PAKTATLSICDRIFTRVGAVDDLATGQSTFMVEMNETANILNHATAKSLVLLDEIGRGTA 742
Query: 638 TEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNST 697
T DG+ + ++ ++ ++ + + TH EL L E + + ++V
Sbjct: 743 TFDGLA-IAWSVAEYLAGEIQARTIFATHYHELNELASL--LENVANFQVTV------KE 793
Query: 698 DVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKH 747
E+I+FL+++ PG A SYG+ LAG+P+ VI RA V+ AQ KH
Sbjct: 794 LPEEIIFLHQVTPGGADKSYGIEAGRLAGLPSSVITRARQVM--AQIEKH 841
>sp|Q39VR6|MUTS_GEOMG DNA mismatch repair protein MutS OS=Geobacter metallireducens
(strain GS-15 / ATCC 53774 / DSM 7210) GN=mutS PE=3 SV=1
Length = 872
Score = 210 bits (535), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 170/596 (28%), Positives = 281/596 (47%), Gaps = 64/596 (10%)
Query: 170 NKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRP 229
+FL LD L++ T + K S+ G++++ T MG R LR W P
Sbjct: 266 QEFLVLDEATRRNLELTAT--------LSEGKRRGSLLGLLDRTATAMGGRKLRQWINYP 317
Query: 230 ILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFL 289
++ +E + R +A+ L A + E L+ V D+ + + + S A D A
Sbjct: 318 LVIVEKIKERQDAVGELANDPALRAGIREALEGVYDLERLNGRISLAS--SGAKDLVALK 375
Query: 290 KSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIID---- 345
S+ + + + E + L E + D +++ A I GI+D
Sbjct: 376 ASLQRIPPLLSLLESTGTALLGELCK--GIDPMDEVAELIGR----------GIVDDPPF 423
Query: 346 VNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVY 405
V R G ++ +G+ ELDELR I E F+ + + E + + I Y
Sbjct: 424 VLRE-----GGIIADGYHAELDELRAISREGKGFIARLEAKEKARTGITSLK-----IRY 473
Query: 406 IHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHK 465
GY + + + L + ++ A ++ + TP+ +E + + +
Sbjct: 474 NKVFGYYIEVTKTNLGSIPEDYIRRQTLANAER--------FITPELKEYEEKVLGAEER 525
Query: 466 ILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLD 525
I+++E ++ + + + + L + + A LD SLA VAH+ NY RP + L
Sbjct: 526 IVELEYSLFQQIRQSVAAEGERLARTADRLATLDVLASLADVAHERNYCRPGIDDGDTLS 585
Query: 526 IQNGRH-VLQEMTV-DTFIPNDTRIDN-DGRINIITGPNYSGKSIYIKQVALIVFLSHIG 582
I GRH V++ + V + F+PND +DN + ++ IITGPN +GKS +++QVALIV ++ +G
Sbjct: 586 ISEGRHPVVEALNVSERFVPNDVLLDNGENQLVIITGPNMAGKSTFMRQVALIVLMAQLG 645
Query: 583 SFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGK 634
SFVPA A +G+ D S ++ QS+FM+++ + +LR AT +SL +LDE G+
Sbjct: 646 SFVPATEARIGVVDRIFTRVGASDNLARGQSTFMVEMMETAAILRNATPKSLVVLDEIGR 705
Query: 635 GTLTEDGIGLLGGTINYF-VTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPE 693
GT T DG+ + Y T K L TH EL R K +V E
Sbjct: 706 GTSTFDGVSIAWAVAEYLHDTARCAAKTLFATHYHELTELAVT----RGKIKNCNVAVKE 761
Query: 694 NNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVE 749
N + ++FL ++V G A SYG+ A LAG+P EVI+RA +L + ++VE
Sbjct: 762 WN----DQVIFLRKIVEGGASHSYGIQVARLAGLPIEVIERAKEILHNLEKGEYVE 813
>sp|P61668|MUTS_LACJO DNA mismatch repair protein MutS OS=Lactobacillus johnsonii (strain
CNCM I-12250 / La1 / NCC 533) GN=mutS PE=3 SV=1
Length = 857
Score = 210 bits (535), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 169/589 (28%), Positives = 278/589 (47%), Gaps = 71/589 (12%)
Query: 171 KFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPI 230
++L++ T L++ ++ K MG S+F +++K T MG RLL++W RP+
Sbjct: 252 QYLQMSHTVQTNLELIKSAKTSKKMG--------SLFWLLDKTSTAMGGRLLKSWIERPL 303
Query: 231 LDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKF-----NSPSFIYTASDW 285
L + + R + L + ++LK V D+ + + N+ + A
Sbjct: 304 LSVTEITRRQEMVQALLDDYFTREKVIDSLKGVYDLERLTGRIAFGSVNAREMLQLAHSL 363
Query: 286 TAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIID 345
A + + +LL N L NF A I L +++L++ I
Sbjct: 364 GAIPEILNALLETNNP-------------HLQNF------AKQIDP-LKGIHDLIVNTIV 403
Query: 346 VNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVAS--LELVQLPHLCKEMFVPCI 403
N G L+REG ++LD R ++L E+ S E+ + +L +
Sbjct: 404 DNPPLPTTEGGLIREGVSEQLDRYRDAMNNGKKWLSEMESHEREVTGINNLK-------V 456
Query: 404 VYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIY 463
Y GY + + ++ ++ T Y TP +E + L+ +
Sbjct: 457 GYNKVFGYYIEVTNSNKSKVPTDR-------YTRKQTLTNAERYITPDLKEHEALILEAE 509
Query: 464 HKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRP-ILTLEP 522
K +E + L + + L K A LD + A V+ QNNY+RP +T +
Sbjct: 510 AKSTGLEYDLFVKLREDVKKYIPALQKLAKQIASLDVLTNFATVSEQNNYVRPNFVTDKQ 569
Query: 523 LLDIQNGRH--VLQEMTVDTFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSH 580
+++ NGRH V Q MT ++IPND ++D D I +ITGPN SGKS Y++Q+ALI ++
Sbjct: 570 EINVVNGRHPVVEQVMTAGSYIPNDVKMDQDTNIFLITGPNMSGKSTYMRQMALIAIMAQ 629
Query: 581 IGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEF 632
IGSFVPAD+AT+ + D + + + QS+FM+++ + L+ AT +SL L DE
Sbjct: 630 IGSFVPADSATLPIFDQIFTRIGAADDLISGQSTFMVEMSEANDALQHATKRSLVLFDEI 689
Query: 633 GKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLK-FYTMSVLR 691
G+GT T DG+ L G + Y + V K L TH EL + + LK + V
Sbjct: 690 GRGTATYDGMALAGAIVKY-LHDKVGAKALFATHYHELTD-----LDQTLKHLKNIHVGA 743
Query: 692 PENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLE 740
E N ++FL++++PG A SYG+H A LAG+P +V++ A +L+
Sbjct: 744 TEENGK----LIFLHKILPGPADQSYGIHVAQLAGLPHKVLREATTMLK 788
>sp|B9K800|MUTS_THENN DNA mismatch repair protein MutS OS=Thermotoga neapolitana (strain
ATCC 49049 / DSM 4359 / NS-E) GN=mutS PE=3 SV=1
Length = 801
Score = 208 bits (530), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 166/611 (27%), Positives = 289/611 (47%), Gaps = 79/611 (12%)
Query: 165 IEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRN 224
+ +S F+ LD+ E L + +K G ++F ++N TPMG RLL+
Sbjct: 243 VTISRKNFMILDSATVENLSLIPGEK------------GKNLFDVLNHTETPMGARLLKK 290
Query: 225 WFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASD 284
W L P+ D + + RLNA+ + + L V+D+ I+ + I D
Sbjct: 291 WILHPLTDRQQIEDRLNAVEKLKEDRLKLEQIRNLLSRVRDVERIVSRVEYNRAI--PRD 348
Query: 285 WTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGII 344
A +++ + +N+ L NFD EK + +++L+ I
Sbjct: 349 LVALRETLSVVPELNE--------------ELSNFDFFEKLNFPDS-----LFDLLCKAI 389
Query: 345 DVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIV 404
+ + + G G +++ GF ELDE R + E E L+E E + +++ V
Sbjct: 390 EDDPAGSPGEGKVIKRGFSPELDEYRDLLEHSEEKLKEFEEREREKTG--IQKLKVG--- 444
Query: 405 YIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYH 464
Y GY + + + LD + +E + ++ E + TP+ +E + +
Sbjct: 445 YNQVFGYYIEVTKANLDKVP----EDYERKQTLVNSER----FTTPELKEFETKIMAAKE 496
Query: 465 KILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLL 524
+I ++E+ + R++ + + LL+ A +D +LA A NY RP + E +
Sbjct: 497 RIEELEKELFRNVCEEVKKHKETLLEISEELARIDVLATLAYDAILYNYTRPTFS-EDRM 555
Query: 525 DIQNGRHVLQEMTVDTFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSF 584
+I GRH + E F+ ND +D++ R +ITGPN SGKS +I+QV LI ++ IGSF
Sbjct: 556 EIIGGRHPVVERFTRDFVENDLYMDDEKRFTVITGPNMSGKSTFIRQVGLISLMAQIGSF 615
Query: 585 VPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGT 636
VPA A + + D + +S+F+++++++ ++L +AT +SL LLDE G+GT
Sbjct: 616 VPAKKAVLPVFDRIFTRMGARDDLAGGRSTFLVEMNEMALILLKATKKSLVLLDEVGRGT 675
Query: 637 LTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN-EGCLPKSERLKFYTMSVLRPENN 695
T+DGI + ++ KVL TH EL N E P+ + ++L E
Sbjct: 676 GTQDGISIAWAISEELISRGC--KVLFATHFIELTNLENSFPQVQ-----NKTILVKEEG 728
Query: 696 STDVEDIVFLYRLVPG------HALLSYGLHCALLAGVPAEVIKRAAYVLE------AAQ 743
S ++VF +R+V G A SYG+ A +AG+P VI+RA ++E + +
Sbjct: 729 S----NVVFTHRVVDGVADRSYGADRSYGIEVARIAGIPENVIRRAFEIMEKGFKTKSQR 784
Query: 744 NNKHVERWSHE 754
N V+++S +
Sbjct: 785 KNGKVKKFSQQ 795
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 287,667,941
Number of Sequences: 539616
Number of extensions: 12260956
Number of successful extensions: 35587
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 31329
Number of HSP's gapped (non-prelim): 1653
length of query: 792
length of database: 191,569,459
effective HSP length: 126
effective length of query: 666
effective length of database: 123,577,843
effective search space: 82302843438
effective search space used: 82302843438
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)