Query 043119
Match_columns 792
No_of_seqs 332 out of 2919
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 13:04:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043119.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043119hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0249 MutS Mismatch repair A 100.0 4E-107 8E-112 950.8 66.9 698 2-781 121-833 (843)
2 PRK05399 DNA mismatch repair p 100.0 1E-102 2E-107 931.4 76.0 697 2-784 128-842 (854)
3 TIGR01070 mutS1 DNA mismatch r 100.0 8E-102 2E-106 917.7 73.5 692 2-785 121-833 (840)
4 KOG0221 Mismatch repair ATPase 100.0 4E-103 9E-108 833.0 41.9 758 2-791 49-845 (849)
5 KOG0218 Mismatch repair MSH3 [ 100.0 1.9E-89 4E-94 738.6 44.1 681 13-745 311-1030(1070)
6 KOG0217 Mismatch repair ATPase 100.0 4.4E-83 9.6E-88 717.5 47.4 705 12-785 390-1123(1125)
7 KOG0219 Mismatch repair ATPase 100.0 6.7E-82 1.4E-86 694.4 43.4 668 11-746 150-838 (902)
8 KOG0220 Mismatch repair ATPase 100.0 6.3E-75 1.4E-79 629.3 43.8 675 11-744 117-813 (867)
9 PRK00409 recombination and DNA 100.0 1.2E-64 2.7E-69 597.5 56.5 486 208-741 17-513 (782)
10 TIGR01069 mutS2 MutS2 family p 100.0 3.9E-59 8.4E-64 549.2 55.4 481 208-743 17-510 (771)
11 PF00488 MutS_V: MutS domain V 100.0 1E-52 2.2E-57 431.1 22.1 223 513-744 1-234 (235)
12 cd03286 ABC_MSH6_euk MutS6 hom 100.0 1.9E-46 4.1E-51 379.1 21.9 207 526-735 2-218 (218)
13 cd03287 ABC_MSH3_euk MutS3 hom 100.0 9.8E-45 2.1E-49 367.6 22.1 210 524-735 1-222 (222)
14 cd03285 ABC_MSH2_euk MutS2 hom 100.0 1.7E-43 3.8E-48 360.7 24.1 210 526-742 2-221 (222)
15 cd03281 ABC_MSH5_euk MutS5 hom 100.0 1.2E-41 2.5E-46 345.3 22.5 203 525-727 1-213 (213)
16 cd03284 ABC_MutS1 MutS1 homolo 100.0 2E-41 4.3E-46 344.3 22.2 206 525-739 1-216 (216)
17 COG1193 Mismatch repair ATPase 100.0 4.5E-39 9.8E-44 371.5 33.6 475 209-740 16-500 (753)
18 cd03282 ABC_MSH4_euk MutS4 hom 100.0 4E-40 8.8E-45 330.9 20.3 192 526-726 2-203 (204)
19 smart00533 MUTSd DNA-binding d 100.0 9.5E-37 2.1E-41 329.9 33.3 306 204-536 2-307 (308)
20 smart00534 MUTSac ATPase domai 100.0 2.7E-37 5.9E-42 307.6 20.1 176 554-738 1-184 (185)
21 cd03283 ABC_MutS-like MutS-lik 100.0 2.1E-36 4.5E-41 303.6 20.9 188 526-727 2-199 (199)
22 cd03243 ABC_MutS_homologs The 100.0 1.1E-34 2.4E-39 293.4 21.3 191 526-727 2-202 (202)
23 cd03280 ABC_MutS2 MutS2 homolo 100.0 1.2E-34 2.5E-39 292.7 20.5 191 525-727 1-200 (200)
24 PF05192 MutS_III: MutS domain 99.9 3E-24 6.5E-29 217.8 21.7 116 177-302 1-116 (204)
25 cd03227 ABC_Class2 ABC-type Cl 99.9 1.8E-21 3.9E-26 189.6 15.5 133 526-673 2-146 (162)
26 COG1131 CcmA ABC-type multidru 99.7 2.6E-16 5.5E-21 167.6 12.4 132 539-673 17-202 (293)
27 COG1121 ZnuC ABC-type Mn/Zn tr 99.7 2.5E-16 5.5E-21 159.9 10.6 129 542-673 19-204 (254)
28 COG4152 ABC-type uncharacteriz 99.6 8.4E-16 1.8E-20 151.3 11.3 133 538-673 13-195 (300)
29 COG1120 FepC ABC-type cobalami 99.6 1.3E-15 2.8E-20 155.7 12.5 133 539-673 14-204 (258)
30 PRK13537 nodulation ABC transp 99.6 5.5E-15 1.2E-19 158.9 12.5 143 523-673 7-203 (306)
31 COG4555 NatA ABC-type Na+ tran 99.6 5.3E-15 1.2E-19 141.7 10.3 128 543-673 18-198 (245)
32 COG1127 Ttg2A ABC-type transpo 99.6 8.4E-15 1.8E-19 144.7 10.8 144 522-672 7-210 (263)
33 PRK13536 nodulation factor exp 99.6 1.5E-14 3.3E-19 157.2 12.9 143 523-673 41-237 (340)
34 COG1116 TauB ABC-type nitrate/ 99.6 2E-14 4.3E-19 144.2 11.9 131 540-672 16-195 (248)
35 cd03230 ABC_DR_subfamily_A Thi 99.6 3E-14 6.6E-19 140.5 12.5 126 541-672 14-159 (173)
36 cd03216 ABC_Carb_Monos_I This 99.5 5.9E-14 1.3E-18 136.9 13.8 120 541-672 14-146 (163)
37 TIGR01188 drrA daunorubicin re 99.5 2E-14 4.4E-19 154.6 11.3 129 541-673 7-189 (302)
38 cd03229 ABC_Class3 This class 99.5 4.1E-14 8.9E-19 140.2 12.3 129 541-672 14-165 (178)
39 cd03215 ABC_Carb_Monos_II This 99.5 6E-14 1.3E-18 139.6 12.9 127 542-672 15-168 (182)
40 cd03238 ABC_UvrA The excision 99.5 5.3E-14 1.1E-18 138.1 12.2 128 540-672 8-153 (176)
41 COG1136 SalX ABC-type antimicr 99.5 5.5E-14 1.2E-18 140.9 12.3 131 540-673 18-208 (226)
42 COG1126 GlnQ ABC-type polar am 99.5 5E-14 1.1E-18 137.1 11.5 140 538-688 13-212 (240)
43 cd03228 ABCC_MRP_Like The MRP 99.5 5.6E-14 1.2E-18 138.3 11.5 125 541-672 16-159 (171)
44 TIGR01288 nodI ATP-binding ABC 99.5 6.4E-14 1.4E-18 150.8 12.6 142 524-673 5-200 (303)
45 cd03217 ABC_FeS_Assembly ABC-t 99.5 7.2E-14 1.6E-18 141.2 12.2 129 541-672 14-168 (200)
46 PRK11247 ssuB aliphatic sulfon 99.5 7.7E-14 1.7E-18 146.2 12.8 147 520-672 9-198 (257)
47 cd03259 ABC_Carb_Solutes_like 99.5 5.7E-14 1.2E-18 143.5 11.3 130 540-672 13-195 (213)
48 cd03268 ABC_BcrA_bacitracin_re 99.5 9.7E-14 2.1E-18 141.2 12.9 129 540-672 13-190 (208)
49 cd03232 ABC_PDR_domain2 The pl 99.5 1.1E-13 2.3E-18 139.0 12.7 128 540-670 20-170 (192)
50 COG1137 YhbG ABC-type (unclass 99.5 1.4E-14 3E-19 138.7 5.8 131 538-671 15-202 (243)
51 cd03246 ABCC_Protease_Secretio 99.5 8.6E-14 1.9E-18 137.2 11.5 126 541-672 16-160 (173)
52 cd03293 ABC_NrtD_SsuB_transpor 99.5 7E-14 1.5E-18 143.6 10.8 131 540-672 17-196 (220)
53 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.5 1.1E-13 2.3E-18 132.0 11.2 115 541-672 14-131 (144)
54 TIGR02673 FtsE cell division A 99.5 8.2E-14 1.8E-18 142.5 11.1 130 540-672 15-201 (214)
55 cd03265 ABC_DrrA DrrA is the A 99.5 1.1E-13 2.4E-18 142.1 12.0 131 540-672 13-196 (220)
56 PRK13543 cytochrome c biogenes 99.5 1.2E-13 2.6E-18 141.1 12.1 144 522-672 10-201 (214)
57 TIGR01166 cbiO cobalt transpor 99.5 5.4E-14 1.2E-18 141.0 9.3 128 540-670 5-189 (190)
58 cd03269 ABC_putative_ATPase Th 99.5 1.2E-13 2.5E-18 140.9 11.7 129 540-672 13-192 (210)
59 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.5 1.2E-13 2.5E-18 141.8 11.7 131 540-672 17-205 (218)
60 TIGR00960 3a0501s02 Type II (G 99.5 9.3E-14 2E-18 142.2 10.9 129 541-672 17-202 (216)
61 cd03222 ABC_RNaseL_inhibitor T 99.5 1.2E-13 2.7E-18 135.6 11.2 116 548-672 20-136 (177)
62 cd03225 ABC_cobalt_CbiO_domain 99.5 1.2E-13 2.6E-18 140.9 11.2 130 540-672 14-198 (211)
63 cd03218 ABC_YhbG The ABC trans 99.5 1.4E-13 3.1E-18 142.6 11.8 130 540-672 13-197 (232)
64 cd03247 ABCC_cytochrome_bd The 99.5 1.5E-13 3.3E-18 136.1 11.5 124 541-672 16-161 (178)
65 cd03301 ABC_MalK_N The N-termi 99.5 1.1E-13 2.3E-18 141.5 10.6 129 541-672 14-195 (213)
66 PRK11248 tauB taurine transpor 99.5 1.3E-13 2.8E-18 144.7 11.4 130 540-672 14-193 (255)
67 cd03226 ABC_cobalt_CbiO_domain 99.5 8.8E-14 1.9E-18 141.2 9.8 128 541-672 14-190 (205)
68 TIGR03522 GldA_ABC_ATP gliding 99.5 1.7E-13 3.6E-18 147.4 12.4 131 539-673 14-197 (301)
69 cd03261 ABC_Org_Solvent_Resist 99.5 2E-13 4.3E-18 141.7 12.4 131 540-672 13-201 (235)
70 PRK11629 lolD lipoprotein tran 99.5 1.7E-13 3.6E-18 142.1 11.8 131 540-672 22-210 (233)
71 COG0396 sufC Cysteine desulfur 99.5 2.1E-13 4.5E-18 134.1 11.4 128 540-673 17-209 (251)
72 cd03224 ABC_TM1139_LivF_branch 99.5 1.7E-13 3.6E-18 141.0 11.5 129 541-672 14-196 (222)
73 cd00267 ABC_ATPase ABC (ATP-bi 99.5 1.7E-13 3.8E-18 132.8 10.9 121 541-673 13-145 (157)
74 COG1119 ModF ABC-type molybden 99.5 1.3E-13 2.9E-18 137.0 10.1 133 538-671 42-236 (257)
75 COG1125 OpuBA ABC-type proline 99.5 2.1E-13 4.6E-18 135.4 11.3 130 539-672 13-200 (309)
76 PRK11264 putative amino-acid A 99.5 2.7E-13 5.9E-18 142.1 13.0 129 540-672 16-208 (250)
77 cd03266 ABC_NatA_sodium_export 99.5 2.2E-13 4.8E-18 139.7 12.1 129 541-672 19-200 (218)
78 PRK13540 cytochrome c biogenes 99.5 2.9E-13 6.2E-18 136.8 12.7 130 540-673 14-192 (200)
79 COG1122 CbiO ABC-type cobalt t 99.5 9.8E-14 2.1E-18 141.8 9.1 145 524-673 4-204 (235)
80 cd03263 ABC_subfamily_A The AB 99.5 2.2E-13 4.9E-18 139.8 11.9 128 540-672 15-196 (220)
81 cd03214 ABC_Iron-Siderophores_ 99.5 1.1E-13 2.4E-18 137.3 9.4 129 541-672 13-162 (180)
82 TIGR03410 urea_trans_UrtE urea 99.5 2.1E-13 4.5E-18 141.1 11.7 130 541-672 14-196 (230)
83 cd03213 ABCG_EPDR ABCG transpo 99.5 1.8E-13 3.9E-18 137.5 10.9 124 540-669 22-172 (194)
84 COG0411 LivG ABC-type branched 99.5 1.4E-13 2.9E-18 137.0 9.7 130 539-672 16-214 (250)
85 cd03262 ABC_HisP_GlnQ_permease 99.5 3.1E-13 6.7E-18 138.1 12.7 129 541-672 14-199 (213)
86 cd03223 ABCD_peroxisomal_ALDP 99.5 2.2E-13 4.8E-18 133.2 11.1 123 541-671 15-151 (166)
87 cd03258 ABC_MetN_methionine_tr 99.5 3E-13 6.6E-18 140.1 12.6 130 541-672 19-205 (233)
88 TIGR02211 LolD_lipo_ex lipopro 99.5 3.4E-13 7.4E-18 138.6 12.7 130 541-672 19-206 (221)
89 cd03231 ABC_CcmA_heme_exporter 99.5 4.1E-13 9E-18 135.8 13.0 128 540-671 13-188 (201)
90 TIGR03258 PhnT 2-aminoethylpho 99.5 2.4E-13 5.2E-18 148.8 11.9 145 523-672 5-203 (362)
91 TIGR03864 PQQ_ABC_ATP ABC tran 99.5 3.7E-13 8.1E-18 139.7 12.7 131 540-672 14-197 (236)
92 PRK09544 znuC high-affinity zi 99.5 2.6E-13 5.7E-18 141.9 11.6 131 540-672 17-185 (251)
93 cd03292 ABC_FtsE_transporter F 99.5 3.2E-13 7E-18 138.0 12.1 129 541-672 15-200 (214)
94 PRK10247 putative ABC transpor 99.5 4.2E-13 9.2E-18 138.2 12.9 144 523-672 7-202 (225)
95 TIGR03608 L_ocin_972_ABC putat 99.5 3.2E-13 7E-18 137.2 11.8 128 541-672 12-198 (206)
96 PRK13539 cytochrome c biogenes 99.5 4.4E-13 9.6E-18 136.2 12.7 129 540-672 15-191 (207)
97 COG0410 LivF ABC-type branched 99.5 5.2E-13 1.1E-17 131.8 12.6 129 540-672 16-201 (237)
98 TIGR03740 galliderm_ABC gallid 99.5 3.1E-13 6.6E-18 139.1 11.6 129 540-672 13-188 (223)
99 PRK13538 cytochrome c biogenes 99.5 5.7E-13 1.2E-17 135.1 13.4 130 540-673 14-194 (204)
100 PRK11614 livF leucine/isoleuci 99.5 3E-13 6.4E-18 140.6 11.5 142 524-672 6-201 (237)
101 COG2884 FtsE Predicted ATPase 99.5 4.6E-13 1E-17 127.5 11.4 127 542-673 17-202 (223)
102 cd03235 ABC_Metallic_Cations A 99.5 2.4E-13 5.1E-18 138.9 10.1 129 541-672 13-196 (213)
103 cd03267 ABC_NatA_like Similar 99.4 4.1E-13 8.8E-18 139.4 12.0 132 539-672 33-218 (236)
104 cd03264 ABC_drug_resistance_li 99.4 4.9E-13 1.1E-17 136.4 12.2 127 541-672 14-193 (211)
105 PRK10895 lipopolysaccharide AB 99.4 5.2E-13 1.1E-17 139.1 12.6 130 540-672 16-201 (241)
106 cd03296 ABC_CysA_sulfate_impor 99.4 3.6E-13 7.8E-18 140.1 11.3 130 540-672 15-201 (239)
107 PRK13548 hmuV hemin importer A 99.4 4.1E-13 8.8E-18 141.3 11.8 130 540-672 15-205 (258)
108 PRK09493 glnQ glutamine ABC tr 99.4 5.1E-13 1.1E-17 139.1 12.4 130 540-672 14-200 (240)
109 TIGR01189 ccmA heme ABC export 99.4 4.9E-13 1.1E-17 135.0 11.7 127 540-670 13-189 (198)
110 PRK09536 btuD corrinoid ABC tr 99.4 4.3E-13 9.3E-18 148.3 12.1 130 539-672 15-203 (402)
111 TIGR03265 PhnT2 putative 2-ami 99.4 5.3E-13 1.2E-17 145.9 12.8 143 524-672 5-199 (353)
112 PRK11432 fbpC ferric transport 99.4 4.5E-13 9.8E-18 146.2 12.1 145 522-672 5-201 (351)
113 PRK10584 putative ABC transpor 99.4 4.1E-13 8.9E-18 138.7 11.1 130 541-672 24-211 (228)
114 PRK10908 cell division protein 99.4 4E-13 8.6E-18 138.2 10.9 131 540-673 15-202 (222)
115 COG1117 PstB ABC-type phosphat 99.4 8.3E-13 1.8E-17 128.1 12.3 139 539-690 19-226 (253)
116 cd03219 ABC_Mj1267_LivG_branch 99.4 4.1E-13 8.8E-18 139.5 11.1 129 541-672 14-207 (236)
117 PRK10619 histidine/lysine/argi 99.4 5.9E-13 1.3E-17 140.1 12.3 142 523-672 5-216 (257)
118 PRK11831 putative ABC transpor 99.4 5.5E-13 1.2E-17 141.2 12.1 131 540-672 20-208 (269)
119 cd03294 ABC_Pro_Gly_Bertaine T 99.4 4.1E-13 8.9E-18 142.1 10.9 130 541-672 38-225 (269)
120 PRK11607 potG putrescine trans 99.4 5.5E-13 1.2E-17 146.8 12.2 144 523-672 19-214 (377)
121 PRK13638 cbiO cobalt transport 99.4 4.8E-13 1E-17 141.8 11.2 130 540-672 14-200 (271)
122 PRK11000 maltose/maltodextrin 99.4 6.7E-13 1.5E-17 146.3 12.6 142 524-672 4-198 (369)
123 PRK11153 metN DL-methionine tr 99.4 5.9E-13 1.3E-17 145.4 12.0 130 540-672 18-205 (343)
124 cd03256 ABC_PhnC_transporter A 99.4 6.6E-13 1.4E-17 138.4 11.8 131 540-672 14-209 (241)
125 TIGR01978 sufC FeS assembly AT 99.4 8.9E-13 1.9E-17 137.6 12.5 130 540-672 13-208 (243)
126 TIGR02315 ABC_phnC phosphonate 99.4 7.8E-13 1.7E-17 138.0 12.0 131 540-672 15-210 (243)
127 TIGR02314 ABC_MetN D-methionin 99.4 8.1E-13 1.8E-17 143.5 12.4 130 541-673 19-206 (343)
128 PRK09452 potA putrescine/sperm 99.4 8.4E-13 1.8E-17 145.2 12.6 144 523-672 14-209 (375)
129 PRK13637 cbiO cobalt transport 99.4 5.1E-13 1.1E-17 142.6 10.6 130 541-672 21-209 (287)
130 TIGR03873 F420-0_ABC_ATP propo 99.4 6.9E-13 1.5E-17 139.5 11.4 130 540-672 14-201 (256)
131 cd03260 ABC_PstB_phosphate_tra 99.4 1E-12 2.2E-17 135.7 12.4 128 540-672 13-204 (227)
132 PRK11231 fecE iron-dicitrate t 99.4 1.1E-12 2.4E-17 137.8 12.8 130 540-672 15-202 (255)
133 cd03295 ABC_OpuCA_Osmoprotecti 99.4 9.5E-13 2.1E-17 137.2 12.1 130 541-672 15-200 (242)
134 cd03298 ABC_ThiQ_thiamine_tran 99.4 5.4E-13 1.2E-17 136.1 9.9 126 545-672 16-193 (211)
135 COG3839 MalK ABC-type sugar tr 99.4 4.2E-13 9.1E-18 142.6 9.2 142 524-672 4-198 (338)
136 cd03257 ABC_NikE_OppD_transpor 99.4 1.2E-12 2.7E-17 135.1 12.5 129 541-672 19-210 (228)
137 PRK14259 phosphate ABC transpo 99.4 1.4E-12 3.1E-17 138.0 13.3 145 520-672 10-217 (269)
138 PRK13641 cbiO cobalt transport 99.4 5.9E-13 1.3E-17 142.2 10.4 129 541-672 21-209 (287)
139 COG3842 PotA ABC-type spermidi 99.4 5.1E-13 1.1E-17 142.8 9.8 144 523-672 5-201 (352)
140 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.4 1.4E-12 3E-17 134.2 12.7 130 540-672 35-206 (224)
141 PRK10575 iron-hydroxamate tran 99.4 1.2E-12 2.6E-17 138.3 12.4 143 524-672 12-212 (265)
142 TIGR01186 proV glycine betaine 99.4 7.5E-13 1.6E-17 144.6 11.1 131 540-672 6-194 (363)
143 PRK14242 phosphate transporter 99.4 1.6E-12 3.4E-17 136.6 13.2 141 524-672 7-212 (253)
144 cd03245 ABCC_bacteriocin_expor 99.4 1.2E-12 2.7E-17 134.3 12.0 128 540-671 17-202 (220)
145 PRK13644 cbiO cobalt transport 99.4 8.3E-13 1.8E-17 140.1 10.9 129 541-672 16-200 (274)
146 PRK11124 artP arginine transpo 99.4 1.6E-12 3.4E-17 135.6 12.9 129 540-672 15-205 (242)
147 TIGR00968 3a0106s01 sulfate AB 99.4 1E-12 2.2E-17 136.5 11.3 131 540-672 13-195 (237)
148 TIGR00972 3a0107s01c2 phosphat 99.4 1.2E-12 2.5E-17 137.0 11.8 128 541-672 15-207 (247)
149 PRK13545 tagH teichoic acids e 99.4 8.8E-13 1.9E-17 147.5 11.4 129 540-672 37-207 (549)
150 PRK13635 cbiO cobalt transport 99.4 7.7E-13 1.7E-17 140.7 10.4 131 540-672 20-205 (279)
151 cd03250 ABCC_MRP_domain1 Domai 99.4 1.1E-12 2.3E-17 133.2 10.9 129 541-672 19-192 (204)
152 PRK14250 phosphate ABC transpo 99.4 1.4E-12 3.1E-17 135.7 12.2 131 540-672 16-196 (241)
153 COG4619 ABC-type uncharacteriz 99.4 1.4E-12 3.1E-17 121.4 10.6 132 538-671 14-197 (223)
154 TIGR01184 ntrCD nitrate transp 99.4 9.6E-13 2.1E-17 136.0 10.7 126 544-672 2-179 (230)
155 PRK15439 autoinducer 2 ABC tra 99.4 1.2E-12 2.5E-17 151.4 12.5 143 523-672 11-204 (510)
156 PRK13646 cbiO cobalt transport 99.4 1.1E-12 2.3E-17 140.1 11.3 129 541-672 21-210 (286)
157 cd03237 ABC_RNaseL_inhibitor_d 99.4 1.1E-12 2.4E-17 136.5 11.2 119 552-672 25-180 (246)
158 TIGR03005 ectoine_ehuA ectoine 99.4 1.3E-12 2.9E-17 137.0 11.9 130 541-672 14-211 (252)
159 TIGR02324 CP_lyasePhnL phospho 99.4 1.2E-12 2.6E-17 134.9 11.2 129 541-672 22-213 (224)
160 PRK13632 cbiO cobalt transport 99.4 1.1E-12 2.5E-17 138.9 11.2 146 523-672 7-207 (271)
161 PRK15177 Vi polysaccharide exp 99.4 8.6E-13 1.9E-17 134.5 9.9 126 542-672 2-167 (213)
162 PRK13647 cbiO cobalt transport 99.4 1E-12 2.3E-17 139.3 10.9 129 540-672 18-202 (274)
163 PRK11300 livG leucine/isoleuci 99.4 1.7E-12 3.7E-17 136.4 12.5 131 540-672 18-218 (255)
164 PRK14268 phosphate ABC transpo 99.4 1.6E-12 3.5E-17 136.8 12.2 141 524-672 13-217 (258)
165 COG1118 CysA ABC-type sulfate/ 99.4 9.6E-13 2.1E-17 134.4 10.0 126 542-672 17-202 (345)
166 PRK13640 cbiO cobalt transport 99.4 1.4E-12 3E-17 139.0 11.8 130 541-672 21-208 (282)
167 PRK10744 pstB phosphate transp 99.4 1.9E-12 4.1E-17 136.4 12.7 143 522-672 12-219 (260)
168 PRK13541 cytochrome c biogenes 99.4 1.4E-12 3.1E-17 131.2 11.1 126 542-672 16-187 (195)
169 PRK11650 ugpC glycerol-3-phosp 99.4 9.6E-13 2.1E-17 144.1 10.6 130 540-672 17-199 (356)
170 PRK10851 sulfate/thiosulfate t 99.4 1.8E-12 3.9E-17 141.8 12.8 131 540-672 15-201 (353)
171 PRK10253 iron-enterobactin tra 99.4 1.4E-12 3E-17 137.8 11.5 144 523-672 7-208 (265)
172 PRK14264 phosphate ABC transpo 99.4 2.8E-12 6E-17 138.1 14.0 153 512-672 34-263 (305)
173 PRK13633 cobalt transporter AT 99.4 1.2E-12 2.5E-17 139.5 10.7 131 540-672 23-209 (280)
174 PRK13651 cobalt transporter AT 99.4 1.8E-12 3.8E-17 139.3 12.1 129 541-672 21-229 (305)
175 TIGR01277 thiQ thiamine ABC tr 99.4 1.6E-12 3.4E-17 132.9 11.2 128 543-672 14-193 (213)
176 TIGR03411 urea_trans_UrtD urea 99.4 1.8E-12 4E-17 135.1 11.9 128 540-672 15-206 (242)
177 cd03278 ABC_SMC_barmotin Barmo 99.4 6.6E-12 1.4E-16 126.2 15.4 124 544-672 14-180 (197)
178 COG4586 ABC-type uncharacteriz 99.4 1.1E-12 2.4E-17 131.5 9.6 129 542-672 39-221 (325)
179 PRK11022 dppD dipeptide transp 99.4 1.5E-12 3.3E-17 141.1 11.5 130 541-672 21-218 (326)
180 PRK13649 cbiO cobalt transport 99.4 1.2E-12 2.5E-17 139.6 10.3 129 541-672 21-209 (280)
181 COG4133 CcmA ABC-type transpor 99.4 1.5E-12 3.2E-17 124.1 9.6 125 539-669 14-191 (209)
182 PRK03695 vitamin B12-transport 99.4 1.5E-12 3.2E-17 136.1 10.8 126 542-672 11-197 (248)
183 PRK13636 cbiO cobalt transport 99.4 2.5E-12 5.5E-17 137.0 12.8 131 540-672 19-206 (283)
184 PRK14248 phosphate ABC transpo 99.4 2.8E-12 6.1E-17 135.8 13.0 142 523-672 21-227 (268)
185 cd03254 ABCC_Glucan_exporter_l 99.4 2.1E-12 4.5E-17 133.5 11.7 127 541-672 17-202 (229)
186 cd03300 ABC_PotA_N PotA is an 99.4 1.6E-12 3.4E-17 134.7 10.7 131 540-672 13-195 (232)
187 PRK09580 sufC cysteine desulfu 99.4 2.8E-12 6E-17 134.3 12.6 130 540-672 14-209 (248)
188 PRK14245 phosphate ABC transpo 99.4 3.5E-12 7.5E-17 133.7 13.3 129 540-672 16-209 (250)
189 PRK14273 phosphate ABC transpo 99.4 2.5E-12 5.3E-17 135.2 12.2 142 523-672 7-213 (254)
190 PRK13546 teichoic acids export 99.4 1.8E-12 4E-17 136.3 11.1 129 541-672 38-207 (264)
191 TIGR02770 nickel_nikD nickel i 99.4 1.2E-12 2.5E-17 135.4 9.4 128 543-672 2-190 (230)
192 cd03233 ABC_PDR_domain1 The pl 99.4 3.3E-12 7.1E-17 129.2 12.4 131 539-671 19-183 (202)
193 PRK13547 hmuV hemin importer A 99.4 2E-12 4.3E-17 136.7 11.2 131 540-672 14-219 (272)
194 cd03251 ABCC_MsbA MsbA is an e 99.4 3.2E-12 6.9E-17 132.6 12.6 128 541-672 16-201 (234)
195 PRK14239 phosphate transporter 99.4 3.1E-12 6.7E-17 134.2 12.6 141 524-672 6-211 (252)
196 TIGR02323 CP_lyasePhnK phospho 99.4 2.3E-12 4.9E-17 135.4 11.4 143 524-672 4-213 (253)
197 PRK14247 phosphate ABC transpo 99.4 3E-12 6.5E-17 134.2 12.2 129 540-672 16-209 (250)
198 PRK13652 cbiO cobalt transport 99.4 1.9E-12 4.1E-17 137.6 10.8 129 541-672 18-202 (277)
199 PRK10938 putative molybdenum t 99.4 1.9E-12 4.1E-17 149.2 11.6 129 540-672 16-199 (490)
200 PRK13648 cbiO cobalt transport 99.4 1.8E-12 3.8E-17 137.4 10.5 144 524-672 8-207 (269)
201 PRK14237 phosphate transporter 99.4 4.4E-12 9.6E-17 134.1 13.5 142 523-672 20-226 (267)
202 PRK14256 phosphate ABC transpo 99.4 3.4E-12 7.4E-17 133.9 12.4 129 540-672 17-211 (252)
203 PRK10771 thiQ thiamine transpo 99.4 2.1E-12 4.6E-17 133.7 10.7 126 545-672 17-194 (232)
204 PRK14241 phosphate transporter 99.4 3.4E-12 7.4E-17 134.4 12.4 141 524-672 5-211 (258)
205 PRK14274 phosphate ABC transpo 99.4 4.3E-12 9.4E-17 133.7 13.1 142 523-672 12-218 (259)
206 PRK13639 cbiO cobalt transport 99.4 2E-12 4.4E-17 137.2 10.6 129 541-672 16-201 (275)
207 PRK14235 phosphate transporter 99.4 3.8E-12 8.1E-17 134.7 12.6 142 523-672 19-226 (267)
208 PRK13634 cbiO cobalt transport 99.4 1.5E-12 3.3E-17 139.1 9.7 130 541-672 21-210 (290)
209 PRK10418 nikD nickel transport 99.4 3E-12 6.5E-17 134.4 11.7 130 541-672 17-205 (254)
210 PRK10070 glycine betaine trans 99.4 2.3E-12 4.9E-17 142.5 11.2 129 541-672 42-229 (400)
211 PRK13643 cbiO cobalt transport 99.4 1.9E-12 4.2E-17 138.2 10.3 128 541-672 20-208 (288)
212 CHL00131 ycf16 sulfate ABC tra 99.4 3.8E-12 8.2E-17 133.6 12.3 142 524-672 8-215 (252)
213 PRK14262 phosphate ABC transpo 99.4 3.9E-12 8.4E-17 133.3 12.3 141 524-672 4-209 (250)
214 PRK14253 phosphate ABC transpo 99.4 5.8E-12 1.2E-16 132.0 13.6 129 540-672 16-208 (249)
215 PRK09984 phosphonate/organopho 99.4 3.8E-12 8.2E-17 134.3 12.3 131 540-672 17-217 (262)
216 PRK14265 phosphate ABC transpo 99.4 3.9E-12 8.5E-17 134.9 12.4 142 523-672 20-224 (274)
217 PRK15056 manganese/iron transp 99.4 2.6E-12 5.5E-17 136.3 10.9 130 540-672 20-206 (272)
218 PRK13549 xylose transporter AT 99.4 2.4E-12 5.2E-17 148.8 11.6 131 539-672 17-207 (506)
219 TIGR02982 heterocyst_DevA ABC 99.4 5.3E-12 1.1E-16 129.7 12.9 130 540-671 18-205 (220)
220 PRK13650 cbiO cobalt transport 99.4 2.1E-12 4.5E-17 137.4 10.2 130 541-672 21-205 (279)
221 TIGR02769 nickel_nikE nickel i 99.4 3.5E-12 7.5E-17 134.8 11.8 131 540-672 24-215 (265)
222 cd03369 ABCC_NFT1 Domain 2 of 99.4 5.9E-12 1.3E-16 128.0 13.0 143 523-672 6-188 (207)
223 cd03291 ABCC_CFTR1 The CFTR su 99.4 5.8E-12 1.3E-16 133.6 13.3 151 512-672 28-223 (282)
224 TIGR03415 ABC_choXWV_ATP choli 99.4 2.2E-12 4.9E-17 141.5 10.4 131 540-672 37-229 (382)
225 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.4 2.8E-12 6.1E-17 133.4 10.7 128 541-672 17-202 (238)
226 cd03244 ABCC_MRP_domain2 Domai 99.4 4.3E-12 9.4E-17 130.4 11.9 129 540-672 17-202 (221)
227 TIGR02142 modC_ABC molybdenum 99.4 2.2E-12 4.8E-17 141.7 10.4 125 545-672 15-196 (354)
228 PRK14240 phosphate transporter 99.4 4.4E-12 9.6E-17 132.9 12.1 128 541-672 17-209 (250)
229 PRK14261 phosphate ABC transpo 99.4 5.4E-12 1.2E-16 132.5 12.7 130 539-672 18-212 (253)
230 PRK10762 D-ribose transporter 99.4 3.4E-12 7.3E-17 147.4 12.2 129 540-672 17-205 (501)
231 PRK14254 phosphate ABC transpo 99.3 4.4E-12 9.6E-17 135.2 12.2 142 523-672 39-243 (285)
232 PRK14275 phosphate ABC transpo 99.3 5.3E-12 1.1E-16 134.8 12.6 129 540-672 52-245 (286)
233 cd03248 ABCC_TAP TAP, the Tran 99.3 4.9E-12 1.1E-16 130.5 12.0 145 523-672 11-213 (226)
234 cd03252 ABCC_Hemolysin The ABC 99.3 3E-12 6.5E-17 133.1 10.4 129 540-672 15-201 (237)
235 PRK15112 antimicrobial peptide 99.3 2.7E-12 5.9E-17 135.7 10.3 130 541-672 27-214 (267)
236 TIGR01257 rim_protein retinal- 99.3 3.2E-12 6.9E-17 163.0 12.6 130 540-673 1952-2135(2272)
237 PRK14267 phosphate ABC transpo 99.3 5.2E-12 1.1E-16 132.6 12.2 129 540-672 17-212 (253)
238 PRK14270 phosphate ABC transpo 99.3 5.3E-12 1.2E-16 132.4 12.1 129 540-672 17-210 (251)
239 cd03234 ABCG_White The White s 99.3 3.9E-12 8.5E-17 131.2 10.8 126 540-668 20-203 (226)
240 PRK09473 oppD oligopeptide tra 99.3 4.3E-12 9.4E-17 137.7 11.5 148 523-672 12-226 (330)
241 COG0488 Uup ATPase components 99.3 4.7E-11 1E-15 135.7 20.3 127 540-673 335-501 (530)
242 PRK14251 phosphate ABC transpo 99.3 6.7E-12 1.5E-16 131.6 12.6 141 524-672 5-210 (251)
243 PRK10419 nikE nickel transport 99.3 7E-12 1.5E-16 132.6 12.7 131 540-672 25-216 (268)
244 PRK14272 phosphate ABC transpo 99.3 6.5E-12 1.4E-16 131.8 12.4 129 540-672 17-211 (252)
245 cd03297 ABC_ModC_molybdenum_tr 99.3 3.3E-12 7.1E-17 130.6 9.8 125 545-672 16-196 (214)
246 COG3638 ABC-type phosphate/pho 99.3 4.3E-12 9.4E-17 125.3 10.1 133 539-673 16-213 (258)
247 PRK11701 phnK phosphonate C-P 99.3 5.3E-12 1.2E-16 132.9 11.6 131 540-672 19-216 (258)
248 PRK14269 phosphate ABC transpo 99.3 6.4E-12 1.4E-16 131.3 12.1 129 540-672 15-205 (246)
249 PRK14249 phosphate ABC transpo 99.3 7.4E-12 1.6E-16 131.3 12.6 128 541-672 18-210 (251)
250 COG1124 DppF ABC-type dipeptid 99.3 5.7E-12 1.2E-16 125.4 10.9 131 541-673 21-207 (252)
251 PRK14236 phosphate transporter 99.3 1.2E-11 2.5E-16 131.3 14.1 143 522-672 24-231 (272)
252 PRK13645 cbiO cobalt transport 99.3 2.8E-12 6.1E-17 137.2 9.5 130 541-672 25-215 (289)
253 PRK11144 modC molybdate transp 99.3 2.9E-12 6.3E-17 140.5 9.8 126 545-672 16-193 (352)
254 PRK15093 antimicrobial peptide 99.3 7.3E-12 1.6E-16 136.2 12.6 131 540-673 20-224 (330)
255 PRK13642 cbiO cobalt transport 99.3 3.8E-12 8.2E-17 135.3 10.1 130 541-672 21-205 (277)
256 PRK13409 putative ATPase RIL; 99.3 4.2E-12 9.1E-17 147.9 11.3 144 523-673 340-519 (590)
257 PRK14255 phosphate ABC transpo 99.3 7.5E-12 1.6E-16 131.3 12.2 129 540-672 18-211 (252)
258 TIGR03269 met_CoM_red_A2 methy 99.3 5.5E-12 1.2E-16 146.3 12.1 66 605-672 167-233 (520)
259 cd03253 ABCC_ATM1_transporter 99.3 4.8E-12 1E-16 131.5 10.2 129 540-672 14-200 (236)
260 cd03299 ABC_ModC_like Archeal 99.3 4.6E-12 1E-16 131.4 9.9 129 542-672 14-194 (235)
261 cd03289 ABCC_CFTR2 The CFTR su 99.3 1.2E-11 2.6E-16 130.7 12.9 129 540-672 17-201 (275)
262 PRK14243 phosphate transporter 99.3 1.4E-11 2.9E-16 130.2 13.3 141 524-672 11-214 (264)
263 PRK09700 D-allose transporter 99.3 8E-12 1.7E-16 144.6 12.6 129 540-672 18-209 (510)
264 PRK14246 phosphate ABC transpo 99.3 7.8E-12 1.7E-16 131.4 11.3 129 539-672 22-216 (257)
265 PRK13631 cbiO cobalt transport 99.3 1.5E-11 3.2E-16 132.9 13.6 147 522-672 20-240 (320)
266 cd03290 ABCC_SUR1_N The SUR do 99.3 7.9E-12 1.7E-16 128.2 10.8 129 541-672 15-206 (218)
267 PRK14258 phosphate ABC transpo 99.3 1.5E-11 3.3E-16 129.6 13.2 143 524-672 8-215 (261)
268 PRK10938 putative molybdenum t 99.3 5.1E-12 1.1E-16 145.6 10.4 144 523-672 260-466 (490)
269 PRK14260 phosphate ABC transpo 99.3 2E-11 4.3E-16 128.6 13.9 141 524-672 8-213 (259)
270 PRK14252 phosphate ABC transpo 99.3 1.2E-11 2.7E-16 130.6 12.3 142 523-672 16-224 (265)
271 PRK11288 araG L-arabinose tran 99.3 8E-12 1.7E-16 144.3 11.8 129 540-672 17-204 (501)
272 PRK14238 phosphate transporter 99.3 1.7E-11 3.7E-16 129.9 13.3 141 524-672 25-230 (271)
273 PRK14271 phosphate ABC transpo 99.3 1.3E-11 2.7E-16 131.1 12.3 142 523-672 21-226 (276)
274 PRK10636 putative ABC transpor 99.3 7.1E-11 1.5E-15 139.6 19.8 140 523-673 312-492 (638)
275 PRK14266 phosphate ABC transpo 99.3 2.2E-11 4.8E-16 127.6 13.5 129 540-672 16-209 (250)
276 PRK14263 phosphate ABC transpo 99.3 1.4E-11 3.1E-16 129.7 12.0 129 540-672 21-212 (261)
277 TIGR02633 xylG D-xylose ABC tr 99.3 1.1E-11 2.3E-16 143.4 12.0 130 540-672 14-205 (500)
278 PRK11308 dppF dipeptide transp 99.3 1.7E-11 3.8E-16 132.8 13.0 130 540-672 28-219 (327)
279 PRK14244 phosphate ABC transpo 99.3 1.3E-11 2.8E-16 129.4 11.5 129 540-672 18-212 (251)
280 PRK15079 oligopeptide ABC tran 99.3 1E-11 2.2E-16 134.8 10.9 131 540-673 34-227 (331)
281 PRK10982 galactose/methyl gala 99.3 1E-11 2.2E-16 143.1 11.0 128 541-672 12-198 (491)
282 PRK14257 phosphate ABC transpo 99.3 2.2E-11 4.8E-16 132.1 13.0 146 521-672 78-288 (329)
283 TIGR03771 anch_rpt_ABC anchore 99.3 1.3E-11 2.8E-16 126.9 10.2 118 552-672 6-177 (223)
284 PRK15134 microcin C ABC transp 99.3 8.8E-12 1.9E-16 144.9 9.9 131 540-672 22-221 (529)
285 COG4604 CeuD ABC-type enteroch 99.3 1.5E-11 3.2E-16 117.8 9.3 133 538-672 12-200 (252)
286 COG3840 ThiQ ABC-type thiamine 99.3 1.9E-11 4E-16 115.7 9.9 124 545-672 17-194 (231)
287 COG1134 TagH ABC-type polysacc 99.3 2E-11 4.4E-16 121.8 10.3 132 539-673 39-212 (249)
288 PRK10982 galactose/methyl gala 99.3 1.3E-11 2.8E-16 142.2 10.3 141 523-672 250-455 (491)
289 TIGR01257 rim_protein retinal- 99.3 1.3E-11 2.7E-16 157.6 10.9 128 540-672 943-1124(2272)
290 PRK15439 autoinducer 2 ABC tra 99.3 1.4E-11 3E-16 142.4 10.2 129 542-673 278-468 (510)
291 PRK15064 ABC transporter ATP-b 99.3 1.9E-11 4E-16 142.2 11.3 140 523-673 319-500 (530)
292 PRK10261 glutathione transport 99.3 2.1E-11 4.5E-16 144.0 11.7 148 522-672 11-233 (623)
293 PRK09700 D-allose transporter 99.3 2.3E-11 4.9E-16 140.9 11.7 141 523-673 265-474 (510)
294 cd03279 ABC_sbcCD SbcCD and ot 99.2 2.2E-11 4.8E-16 124.3 10.2 47 623-672 151-197 (213)
295 TIGR03719 ABC_ABC_ChvD ATP-bin 99.2 1.7E-11 3.8E-16 143.0 10.6 128 539-673 334-505 (552)
296 cd03288 ABCC_SUR2 The SUR doma 99.2 4.4E-11 9.5E-16 125.8 12.7 129 540-672 34-219 (257)
297 TIGR02633 xylG D-xylose ABC tr 99.2 1.4E-11 3E-16 142.4 9.7 146 523-673 257-468 (500)
298 PRK13549 xylose transporter AT 99.2 1.9E-11 4E-16 141.4 10.7 146 523-673 259-470 (506)
299 COG4598 HisP ABC-type histidin 99.2 6E-11 1.3E-15 111.7 11.9 145 540-691 19-231 (256)
300 PRK11147 ABC transporter ATPas 99.2 2.1E-11 4.5E-16 144.5 11.0 140 523-673 319-502 (635)
301 PRK11819 putative ABC transpor 99.2 2E-11 4.4E-16 142.5 10.5 140 523-673 324-507 (556)
302 COG4175 ProV ABC-type proline/ 99.2 2.6E-11 5.5E-16 124.2 9.6 128 541-672 42-229 (386)
303 COG1135 AbcC ABC-type metal io 99.2 2.8E-11 6.1E-16 124.1 9.8 128 541-673 20-207 (339)
304 PRK10636 putative ABC transpor 99.2 3.3E-11 7.1E-16 142.5 11.8 128 539-673 13-211 (638)
305 cd03270 ABC_UvrA_I The excisio 99.2 6E-11 1.3E-15 122.1 12.1 65 605-672 136-203 (226)
306 PRK11288 araG L-arabinose tran 99.2 2.9E-11 6.2E-16 139.7 10.8 130 541-673 267-461 (501)
307 COG1129 MglA ABC-type sugar tr 99.2 4.6E-11 1E-15 132.4 11.8 130 539-671 20-208 (500)
308 cd03236 ABC_RNaseL_inhibitor_d 99.2 4.3E-11 9.4E-16 125.2 10.5 60 610-672 144-203 (255)
309 PRK15134 microcin C ABC transp 99.2 3.4E-11 7.4E-16 140.0 10.7 131 540-673 299-491 (529)
310 PRK11819 putative ABC transpor 99.2 4E-11 8.6E-16 140.0 11.2 127 540-673 20-225 (556)
311 cd03239 ABC_SMC_head The struc 99.2 1.9E-10 4.2E-15 113.5 14.3 117 553-672 23-162 (178)
312 PRK15064 ABC transporter ATP-b 99.2 4.4E-11 9.5E-16 139.1 11.4 126 540-672 14-216 (530)
313 TIGR03269 met_CoM_red_A2 methy 99.2 4.7E-11 1E-15 138.6 11.4 148 523-673 279-493 (520)
314 PRK10762 D-ribose transporter 99.2 4.5E-11 9.7E-16 138.1 11.1 128 542-673 267-460 (501)
315 COG4988 CydD ABC-type transpor 99.2 5.7E-10 1.2E-14 124.2 19.2 182 485-672 278-519 (559)
316 COG4674 Uncharacterized ABC-ty 99.2 2.1E-11 4.6E-16 116.5 6.8 139 540-688 18-222 (249)
317 PRK10261 glutathione transport 99.2 3.4E-11 7.5E-16 142.1 9.8 130 541-673 338-529 (623)
318 PLN03211 ABC transporter G-25; 99.2 4.2E-11 9.1E-16 141.3 9.9 127 540-669 81-267 (659)
319 PRK11147 ABC transporter ATPas 99.2 6.8E-11 1.5E-15 140.1 11.1 128 540-673 16-218 (635)
320 COG4559 ABC-type hemin transpo 99.2 1.5E-10 3.2E-15 112.4 11.3 132 539-673 13-206 (259)
321 cd03240 ABC_Rad50 The catalyti 99.2 1.4E-10 3.1E-15 117.2 11.6 53 618-672 134-187 (204)
322 COG2274 SunT ABC-type bacterio 99.2 4.2E-10 9.2E-15 132.2 17.1 150 514-672 464-672 (709)
323 TIGR03719 ABC_ABC_ChvD ATP-bin 99.2 8.6E-11 1.9E-15 137.2 11.2 127 540-673 18-223 (552)
324 KOG0059 Lipid exporter ABCA1 a 99.2 5.1E-11 1.1E-15 145.3 9.3 128 542-673 580-763 (885)
325 PRK13657 cyclic beta-1,2-gluca 99.2 6.5E-10 1.4E-14 131.1 17.8 143 523-672 334-534 (588)
326 PRK13409 putative ATPase RIL; 99.2 1.1E-10 2.4E-15 136.0 11.1 128 540-672 87-275 (590)
327 PLN03073 ABC transporter F fam 99.2 8.5E-11 1.8E-15 139.6 10.1 127 540-673 522-689 (718)
328 COG4107 PhnK ABC-type phosphon 99.2 3.7E-10 8.1E-15 105.8 12.2 131 540-673 19-217 (258)
329 TIGR01842 type_I_sec_PrtD type 99.1 7.8E-10 1.7E-14 129.2 17.9 145 523-672 316-518 (544)
330 cd03274 ABC_SMC4_euk Eukaryoti 99.1 3.2E-10 6.9E-15 115.3 12.4 47 622-672 148-194 (212)
331 PRK10535 macrolide transporter 99.1 2.3E-10 5.1E-15 135.6 13.1 130 540-672 21-208 (648)
332 COG4525 TauB ABC-type taurine 99.1 1.5E-10 3.4E-15 110.6 9.2 130 541-672 19-197 (259)
333 PRK10790 putative multidrug tr 99.1 1E-09 2.2E-14 129.7 18.1 143 523-672 340-539 (592)
334 cd03276 ABC_SMC6_euk Eukaryoti 99.1 3.5E-10 7.5E-15 113.8 12.1 125 546-672 15-180 (198)
335 PRK11176 lipid transporter ATP 99.1 1.1E-09 2.5E-14 129.0 18.3 144 523-672 341-543 (582)
336 KOG0057 Mitochondrial Fe/S clu 99.1 1.1E-09 2.5E-14 120.0 16.6 151 516-673 344-551 (591)
337 TIGR03375 type_I_sec_LssB type 99.1 6.7E-10 1.5E-14 133.5 16.3 144 523-672 463-664 (694)
338 TIGR01192 chvA glucan exporter 99.1 1.1E-09 2.5E-14 128.7 17.2 143 523-672 334-534 (585)
339 TIGR02203 MsbA_lipidA lipid A 99.1 1.5E-09 3.2E-14 127.9 18.3 144 523-672 330-532 (571)
340 COG4181 Predicted ABC-type tra 99.1 4.2E-10 9.1E-15 105.5 10.7 130 539-673 22-212 (228)
341 COG3845 ABC-type uncharacteriz 99.1 3.5E-10 7.6E-15 122.9 11.3 128 542-672 19-204 (501)
342 TIGR01187 potA spermidine/putr 99.1 1.6E-10 3.6E-15 125.4 8.8 65 606-672 100-165 (325)
343 PRK10789 putative multidrug tr 99.1 1.1E-09 2.5E-14 128.4 16.5 129 540-672 328-514 (569)
344 PLN03073 ABC transporter F fam 99.1 2.9E-10 6.2E-15 135.1 11.2 63 605-673 343-406 (718)
345 COG0444 DppD ABC-type dipeptid 99.1 5.5E-10 1.2E-14 116.3 11.7 131 541-673 19-219 (316)
346 PRK11174 cysteine/glutathione 99.1 1.6E-09 3.5E-14 127.9 17.3 141 523-672 349-548 (588)
347 COG1101 PhnK ABC-type uncharac 99.1 4.7E-10 1E-14 109.2 10.2 131 539-671 18-212 (263)
348 TIGR00955 3a01204 The Eye Pigm 99.1 2E-10 4.4E-15 135.5 9.4 126 539-669 37-227 (617)
349 TIGR00954 3a01203 Peroxysomal 99.1 2E-09 4.3E-14 127.9 17.7 126 540-672 465-643 (659)
350 COG0488 Uup ATPase components 99.1 3.4E-10 7.4E-15 128.8 10.7 129 538-673 14-215 (530)
351 TIGR02204 MsbA_rel ABC transpo 99.1 2.4E-09 5.2E-14 126.2 18.2 145 523-672 337-539 (576)
352 TIGR03797 NHPM_micro_ABC2 NHPM 99.1 2.2E-09 4.7E-14 129.0 18.0 141 523-672 451-649 (686)
353 PRK10522 multidrug transporter 99.1 2.4E-09 5.2E-14 125.1 17.7 144 523-672 322-514 (547)
354 TIGR02857 CydD thiol reductant 99.1 2.8E-09 6.2E-14 124.2 17.4 143 523-672 320-521 (529)
355 PRK11160 cysteine/glutathione 99.1 2.3E-09 5.1E-14 125.8 16.6 143 523-672 338-538 (574)
356 cd03275 ABC_SMC1_euk Eukaryoti 99.1 2.3E-09 4.9E-14 112.1 14.4 48 622-672 176-223 (247)
357 TIGR01846 type_I_sec_HlyB type 99.0 3.8E-09 8.1E-14 127.0 18.1 144 523-672 455-656 (694)
358 TIGR03796 NHPM_micro_ABC1 NHPM 99.0 3E-09 6.5E-14 128.3 17.3 141 523-672 477-676 (710)
359 TIGR02868 CydC thiol reductant 99.0 1.8E-09 3.9E-14 125.8 14.8 138 523-668 334-529 (529)
360 PLN03140 ABC transporter G fam 99.0 6.5E-10 1.4E-14 141.1 11.6 128 540-670 893-1081(1470)
361 TIGR01194 cyc_pep_trnsptr cycl 99.0 1.4E-09 3.1E-14 127.1 13.5 147 523-672 337-535 (555)
362 COG1123 ATPase components of v 99.0 1.7E-09 3.6E-14 121.0 13.2 131 541-673 23-220 (539)
363 cd03272 ABC_SMC3_euk Eukaryoti 99.0 2E-09 4.3E-14 112.3 13.1 47 622-672 179-225 (243)
364 cd03271 ABC_UvrA_II The excisi 99.0 3.2E-09 7E-14 110.7 14.3 65 605-672 168-236 (261)
365 COG4161 ArtP ABC-type arginine 99.0 2.4E-09 5.2E-14 99.2 11.2 127 542-673 17-206 (242)
366 cd03277 ABC_SMC5_euk Eukaryoti 99.0 2.2E-09 4.8E-14 109.2 12.2 65 605-670 125-194 (213)
367 TIGR00956 3a01205 Pleiotropic 99.0 9.5E-10 2.1E-14 140.0 11.6 128 540-670 776-964 (1394)
368 TIGR01193 bacteriocin_ABC ABC- 99.0 6.1E-09 1.3E-13 125.6 17.7 141 523-672 473-673 (708)
369 COG4618 ArpD ABC-type protease 99.0 1.4E-08 3.1E-13 110.5 17.9 131 539-672 348-536 (580)
370 TIGR00958 3a01208 Conjugate Tr 99.0 5.1E-09 1.1E-13 125.9 16.2 143 523-672 478-678 (711)
371 KOG0062 ATPase component of AB 99.0 1E-09 2.3E-14 119.2 8.4 123 539-672 92-259 (582)
372 KOG0927 Predicted transporter 99.0 9.3E-10 2E-14 120.2 7.5 126 541-673 404-571 (614)
373 PF05188 MutS_II: MutS domain 99.0 9E-09 1.9E-13 97.2 13.1 123 3-144 1-128 (137)
374 COG4608 AppF ABC-type oligopep 98.9 2.4E-09 5.1E-14 109.3 9.2 130 541-673 27-175 (268)
375 KOG0056 Heavy metal exporter H 98.9 5.3E-09 1.1E-13 112.4 11.8 153 511-671 525-736 (790)
376 COG4615 PvdE ABC-type sideroph 98.9 2.1E-08 4.4E-13 105.7 15.8 143 522-671 321-512 (546)
377 TIGR01271 CFTR_protein cystic 98.9 2.5E-09 5.3E-14 137.4 11.1 129 540-672 439-612 (1490)
378 COG4148 ModC ABC-type molybdat 98.9 2.6E-09 5.7E-14 107.8 8.1 126 545-672 16-193 (352)
379 KOG0061 Transporter, ABC super 98.9 4.1E-09 8.8E-14 123.3 10.9 126 539-669 42-231 (613)
380 PTZ00243 ABC transporter; Prov 98.9 3.3E-09 7.1E-14 136.4 10.5 131 539-672 672-846 (1560)
381 KOG0927 Predicted transporter 98.9 1.3E-08 2.9E-13 111.3 13.3 49 620-673 236-284 (614)
382 TIGR00956 3a01205 Pleiotropic 98.9 2.8E-09 6E-14 135.8 9.5 127 540-668 74-270 (1394)
383 PTZ00265 multidrug resistance 98.9 5.2E-09 1.1E-13 133.6 11.8 65 606-672 579-644 (1466)
384 cd03273 ABC_SMC2_euk Eukaryoti 98.9 1.4E-08 3E-13 106.5 12.2 47 622-672 187-233 (251)
385 COG1245 Predicted ATPase, RNas 98.9 6.1E-09 1.3E-13 111.6 9.4 119 552-672 367-520 (591)
386 COG2401 ABC-type ATPase fused 98.9 1.1E-08 2.5E-13 108.2 11.0 131 539-673 395-573 (593)
387 TIGR00957 MRP_assoc_pro multi 98.9 3.3E-08 7.3E-13 127.5 17.5 144 523-672 636-826 (1522)
388 COG4778 PhnL ABC-type phosphon 98.9 6E-09 1.3E-13 97.6 7.6 130 540-672 24-216 (235)
389 PLN03232 ABC transporter C fam 98.9 4.1E-08 9E-13 126.5 18.0 146 523-672 614-804 (1495)
390 PLN03130 ABC transporter C fam 98.9 5.5E-08 1.2E-12 125.5 19.1 146 523-672 614-804 (1622)
391 COG1123 ATPase components of v 98.8 8.1E-09 1.8E-13 115.5 9.6 130 541-673 305-495 (539)
392 PF00005 ABC_tran: ABC transpo 98.8 2.2E-09 4.8E-14 101.3 4.2 33 544-576 2-35 (137)
393 COG4138 BtuD ABC-type cobalami 98.8 1.1E-08 2.4E-13 96.2 8.7 46 623-671 150-195 (248)
394 COG4987 CydC ABC-type transpor 98.8 4.1E-08 9E-13 107.9 14.3 144 523-672 336-537 (573)
395 COG1132 MdlB ABC-type multidru 98.8 1E-07 2.2E-12 112.1 18.6 141 524-672 329-528 (567)
396 PLN03140 ABC transporter G fam 98.8 4.5E-09 9.7E-14 133.6 7.5 55 612-668 343-397 (1470)
397 KOG0055 Multidrug/pheromone ex 98.8 2.9E-08 6.3E-13 119.3 13.5 145 521-672 348-552 (1228)
398 COG3910 Predicted ATPase [Gene 98.8 4E-08 8.7E-13 93.8 11.0 56 614-672 137-192 (233)
399 COG4178 ABC-type uncharacteriz 98.8 2.4E-07 5.1E-12 105.3 18.1 127 540-672 406-578 (604)
400 KOG2355 Predicted ABC-type tra 98.7 3E-08 6.6E-13 95.7 8.1 143 522-671 12-211 (291)
401 KOG0066 eIF2-interacting prote 98.7 2.4E-08 5.2E-13 105.9 8.0 47 620-672 719-765 (807)
402 COG4136 ABC-type uncharacteriz 98.7 4.7E-08 1E-12 89.8 8.3 128 543-672 18-199 (213)
403 PLN03232 ABC transporter C fam 98.7 2.6E-07 5.6E-12 119.2 18.0 143 523-672 1234-1434(1495)
404 TIGR00630 uvra excinuclease AB 98.7 1.6E-07 3.5E-12 113.5 14.9 65 605-672 827-895 (924)
405 PTZ00265 multidrug resistance 98.7 8E-08 1.7E-12 122.9 12.5 62 609-672 1362-1423(1466)
406 PRK00349 uvrA excinuclease ABC 98.7 1.7E-07 3.7E-12 113.5 14.4 65 605-672 829-897 (943)
407 KOG0058 Peptide exporter, ABC 98.7 6.7E-08 1.5E-12 110.0 9.5 145 522-673 464-668 (716)
408 PLN03130 ABC transporter C fam 98.7 2.6E-07 5.7E-12 119.4 16.1 143 523-672 1237-1437(1622)
409 cd03241 ABC_RecN RecN ATPase i 98.6 1.5E-07 3.2E-12 100.0 11.5 46 623-672 192-237 (276)
410 COG1245 Predicted ATPase, RNas 98.6 3.4E-07 7.3E-12 98.5 12.8 145 524-672 67-277 (591)
411 TIGR00957 MRP_assoc_pro multi 98.6 5.4E-07 1.2E-11 116.5 17.3 143 523-672 1284-1484(1522)
412 TIGR01271 CFTR_protein cystic 98.6 2.3E-07 5.1E-12 119.5 13.6 128 539-672 1231-1416(1490)
413 COG4172 ABC-type uncharacteriz 98.6 5.6E-07 1.2E-11 95.5 12.9 145 523-673 6-223 (534)
414 PTZ00243 ABC transporter; Prov 98.6 3.1E-07 6.6E-12 118.5 13.2 129 540-672 1323-1509(1560)
415 PRK00635 excinuclease ABC subu 98.6 2.4E-07 5.2E-12 117.3 11.5 48 622-672 829-876 (1809)
416 PF05190 MutS_IV: MutS family 98.5 1.7E-06 3.6E-11 75.6 11.2 91 361-464 1-91 (92)
417 KOG0065 Pleiotropic drug resis 98.4 7E-07 1.5E-11 107.8 10.4 47 621-670 945-992 (1391)
418 KOG0064 Peroxisomal long-chain 98.4 5.6E-06 1.2E-10 90.7 14.5 128 539-672 494-673 (728)
419 PF02463 SMC_N: RecF/RecN/SMC 98.3 4E-06 8.6E-11 86.1 12.2 50 620-673 155-204 (220)
420 KOG0054 Multidrug resistance-a 98.3 8.2E-06 1.8E-10 101.0 16.7 147 521-672 516-707 (1381)
421 KOG0055 Multidrug/pheromone ex 98.3 3.1E-06 6.8E-11 102.3 11.9 130 537-672 1000-1189(1228)
422 COG0178 UvrA Excinuclease ATPa 98.3 6.1E-06 1.3E-10 94.9 12.8 61 609-672 826-889 (935)
423 COG4172 ABC-type uncharacteriz 98.2 3.1E-06 6.8E-11 90.0 8.9 66 606-673 426-492 (534)
424 TIGR02858 spore_III_AA stage I 98.2 4.1E-06 8.9E-11 87.9 9.7 104 553-672 112-233 (270)
425 PRK00635 excinuclease ABC subu 98.2 6.7E-06 1.4E-10 104.5 12.7 62 609-673 1703-1767(1809)
426 KOG0060 Long-chain acyl-CoA tr 98.2 2.4E-05 5.1E-10 87.1 15.0 128 539-672 447-631 (659)
427 COG4167 SapF ABC-type antimicr 98.2 8.4E-06 1.8E-10 77.7 9.6 60 611-672 155-214 (267)
428 PF13304 AAA_21: AAA domain; P 98.2 4.8E-06 1E-10 86.8 8.4 48 621-671 254-302 (303)
429 PRK08533 flagellar accessory p 98.1 8.2E-06 1.8E-10 84.1 8.7 115 552-670 24-164 (230)
430 KOG0066 eIF2-interacting prote 98.0 5.7E-06 1.2E-10 88.3 5.2 48 620-673 427-474 (807)
431 cd01120 RecA-like_NTPases RecA 98.0 2.3E-05 5E-10 75.7 8.9 114 554-670 1-139 (165)
432 COG1129 MglA ABC-type sugar tr 98.0 2.6E-05 5.6E-10 87.2 10.3 138 523-671 263-465 (500)
433 PRK13695 putative NTPase; Prov 98.0 5.2E-05 1.1E-09 74.7 11.3 64 620-688 93-157 (174)
434 cd03242 ABC_RecF RecF is a rec 98.0 3.6E-05 7.8E-10 81.6 10.6 44 621-671 208-251 (270)
435 COG5265 ATM1 ABC-type transpor 97.9 0.00021 4.6E-09 76.9 15.0 129 538-671 274-461 (497)
436 COG4170 SapD ABC-type antimicr 97.9 3.2E-05 7E-10 75.3 7.2 61 610-672 163-223 (330)
437 PF13555 AAA_29: P-loop contai 97.9 1.4E-05 3.1E-10 63.3 3.9 34 544-577 15-48 (62)
438 cd01124 KaiC KaiC is a circadi 97.9 6E-05 1.3E-09 75.0 9.4 47 622-671 94-143 (187)
439 smart00382 AAA ATPases associa 97.8 0.0001 2.2E-09 68.7 9.8 113 552-667 2-125 (148)
440 KOG0054 Multidrug resistance-a 97.8 0.00014 3E-09 90.5 12.7 144 522-671 1137-1337(1381)
441 PRK06067 flagellar accessory p 97.8 9.5E-05 2.1E-09 76.6 9.5 116 552-670 25-167 (234)
442 cd01131 PilT Pilus retraction 97.7 0.00019 4.2E-09 72.3 9.9 105 553-672 2-113 (198)
443 KOG0062 ATPase component of AB 97.7 6.5E-05 1.4E-09 82.6 6.7 58 610-673 487-544 (582)
444 PRK09183 transposase/IS protei 97.6 0.00016 3.5E-09 75.9 8.9 101 552-668 102-206 (259)
445 cd00009 AAA The AAA+ (ATPases 97.6 0.00035 7.5E-09 65.7 9.9 107 552-669 19-131 (151)
446 KOG0063 RNAse L inhibitor, ABC 97.6 0.00015 3.3E-09 77.8 7.2 62 609-672 460-521 (592)
447 PF00004 AAA: ATPase family as 97.5 0.00057 1.2E-08 63.4 10.1 104 555-672 1-116 (132)
448 TIGR02788 VirB11 P-type DNA tr 97.5 0.00065 1.4E-08 73.4 10.6 98 552-672 144-257 (308)
449 PRK06526 transposase; Provisio 97.4 0.00084 1.8E-08 70.2 10.3 104 552-668 98-201 (254)
450 cd00820 PEPCK_HprK Phosphoenol 97.4 0.00013 2.8E-09 65.0 3.4 32 542-573 4-36 (107)
451 PRK14722 flhF flagellar biosyn 97.3 0.00021 4.6E-09 78.1 4.7 85 552-636 137-228 (374)
452 PRK06995 flhF flagellar biosyn 97.3 0.00028 6E-09 79.7 5.3 84 552-635 256-346 (484)
453 PRK14721 flhF flagellar biosyn 97.3 0.00032 7E-09 77.9 5.4 86 552-641 191-285 (420)
454 PRK06921 hypothetical protein; 97.3 0.0016 3.5E-08 68.6 10.4 102 552-668 117-225 (266)
455 PRK06893 DNA replication initi 97.2 0.001 2.3E-08 68.6 8.8 94 552-668 39-134 (229)
456 PRK07952 DNA replication prote 97.2 0.00097 2.1E-08 69.1 7.9 105 553-667 100-204 (244)
457 PRK04296 thymidine kinase; Pro 97.2 0.0031 6.6E-08 63.1 11.3 110 552-670 2-118 (190)
458 PRK12377 putative replication 97.2 0.0025 5.5E-08 66.2 10.7 104 553-667 102-205 (248)
459 PF13173 AAA_14: AAA domain 97.2 0.0022 4.7E-08 59.7 9.1 99 552-671 2-102 (128)
460 TIGR00634 recN DNA repair prot 97.1 0.0049 1.1E-07 72.4 14.0 111 610-740 445-562 (563)
461 COG4637 Predicted ATPase [Gene 97.1 0.0038 8.3E-08 65.1 11.2 49 621-673 288-336 (373)
462 TIGR01420 pilT_fam pilus retra 97.1 0.00072 1.6E-08 74.1 6.5 23 552-574 122-144 (343)
463 TIGR00602 rad24 checkpoint pro 97.1 0.0017 3.7E-08 76.0 9.5 25 552-576 110-134 (637)
464 PRK08181 transposase; Validate 97.1 0.0021 4.5E-08 67.6 9.4 103 552-668 106-209 (269)
465 cd01130 VirB11-like_ATPase Typ 97.1 0.0013 2.8E-08 65.6 7.4 24 552-575 25-48 (186)
466 PRK10869 recombination and rep 97.1 0.0054 1.2E-07 71.4 13.4 112 609-740 434-552 (553)
467 PRK14723 flhF flagellar biosyn 97.1 0.00069 1.5E-08 80.0 5.9 85 552-636 185-276 (767)
468 PRK07721 fliI flagellum-specif 97.0 0.006 1.3E-07 68.6 12.8 126 541-669 147-317 (438)
469 cd01125 repA Hexameric Replica 97.0 0.0034 7.4E-08 65.2 9.8 27 552-578 1-27 (239)
470 PRK08939 primosomal protein Dn 97.0 0.0054 1.2E-07 66.0 11.5 99 552-668 156-261 (306)
471 PRK08116 hypothetical protein; 97.0 0.005 1.1E-07 65.0 10.7 107 552-668 114-221 (268)
472 TIGR03499 FlhF flagellar biosy 97.0 0.00099 2.2E-08 70.9 5.4 81 552-633 194-282 (282)
473 PTZ00454 26S protease regulato 96.9 0.0068 1.5E-07 67.6 11.7 106 552-673 179-299 (398)
474 PF13476 AAA_23: AAA domain; P 96.9 0.00071 1.5E-08 67.8 3.7 30 545-576 14-43 (202)
475 KOG0219 Mismatch repair ATPase 96.9 0.00011 2.4E-09 84.2 -2.5 205 526-745 626-840 (902)
476 PRK12727 flagellar biosynthesi 96.9 0.0035 7.6E-08 71.0 8.9 84 552-635 350-440 (559)
477 TIGR00630 uvra excinuclease AB 96.8 0.0032 6.8E-08 77.0 8.9 46 624-672 508-553 (924)
478 KOG1970 Checkpoint RAD17-RFC c 96.8 0.0074 1.6E-07 67.4 10.5 113 552-667 110-237 (634)
479 PLN03210 Resistant to P. syrin 96.8 0.0033 7E-08 80.2 9.0 23 552-574 207-229 (1153)
480 PF03215 Rad17: Rad17 cell cyc 96.8 0.0041 8.9E-08 71.4 8.7 108 552-666 45-174 (519)
481 PRK00349 uvrA excinuclease ABC 96.8 0.0038 8.1E-08 76.5 8.8 67 603-672 489-555 (943)
482 PRK08727 hypothetical protein; 96.7 0.0069 1.5E-07 62.7 9.5 91 552-667 41-135 (233)
483 COG3854 SpoIIIAA ncharacterize 96.7 0.0086 1.9E-07 59.8 9.2 106 552-672 136-257 (308)
484 PRK10078 ribose 1,5-bisphospho 96.7 0.0012 2.5E-08 65.9 2.9 23 552-574 2-24 (186)
485 TIGR03238 dnd_assoc_3 dnd syst 96.7 0.00089 1.9E-08 74.5 2.2 30 541-570 20-50 (504)
486 PRK11889 flhF flagellar biosyn 96.6 0.0066 1.4E-07 66.3 8.8 24 552-575 241-264 (436)
487 PRK12723 flagellar biosynthesi 96.6 0.0044 9.5E-08 68.5 7.6 84 552-636 174-267 (388)
488 TIGR03881 KaiC_arch_4 KaiC dom 96.6 0.015 3.4E-07 59.8 11.3 24 552-575 20-43 (229)
489 PRK06835 DNA replication prote 96.6 0.0065 1.4E-07 65.9 8.7 103 552-667 183-288 (329)
490 PF01695 IstB_IS21: IstB-like 96.6 0.0041 9E-08 61.4 6.6 100 552-667 47-149 (178)
491 PTZ00132 GTP-binding nuclear p 96.6 0.0036 7.8E-08 63.8 6.4 34 620-654 167-205 (215)
492 TIGR00235 udk uridine kinase. 96.6 0.0014 3.1E-08 66.4 3.3 24 552-575 6-29 (207)
493 PRK08699 DNA polymerase III su 96.6 0.007 1.5E-07 65.6 8.7 115 552-671 21-156 (325)
494 PRK14088 dnaA chromosomal repl 96.6 0.0038 8.3E-08 70.7 7.0 105 554-671 132-241 (440)
495 PTZ00361 26 proteosome regulat 96.6 0.0053 1.1E-07 69.0 8.0 24 552-575 217-240 (438)
496 TIGR02237 recomb_radB DNA repa 96.6 0.0093 2E-07 60.5 9.2 38 552-589 12-50 (209)
497 cd01121 Sms Sms (bacterial rad 96.6 0.0089 1.9E-07 66.0 9.3 110 552-668 82-210 (372)
498 PRK09825 idnK D-gluconate kina 96.5 0.0017 3.8E-08 64.0 3.2 24 552-575 3-26 (176)
499 PRK05703 flhF flagellar biosyn 96.5 0.0041 8.9E-08 69.9 6.6 86 552-637 221-313 (424)
500 PRK14963 DNA polymerase III su 96.5 0.013 2.7E-07 67.4 10.5 112 552-669 36-157 (504)
No 1
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.7e-107 Score=950.78 Aligned_cols=698 Identities=30% Similarity=0.466 Sum_probs=565.0
Q ss_pred ceEEEEEE--cCCeEEEEEEEcccccEEEEEEeCCCCCCccHHHHHhhcCCc-eEEeCCCCChhHHHHHhhhcCCCCCCc
Q 043119 2 QVYMACIL--HGHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQP-QIIYTSTKSEESFLSALKRSDGTTEAP 78 (792)
Q Consensus 2 ~v~l~~i~--~~~~iGiA~~D~stg~l~i~e~~d~~~~~~~~~~~~~~q~~P-~iIi~~~~~~~~~~~~l~~~~~~~~~~ 78 (792)
++|+++++ +++.+|+||+|+|||+|+++++..+ ....++.++ +| ++++.++..+......... .
T Consensus 121 ~n~l~a~~~~~~~~~gla~~dlstGef~~~~~~~~----~l~~~l~r~--~p~Eil~~~~~~~~~~~~~~~~-------~ 187 (843)
T COG0249 121 NNYLAALAIDRDGKVGLAFIDLSTGEFFVSEFERE----KLLSELKRL--QPKELLLSESLLSSTLAEIQKG-------L 187 (843)
T ss_pred cceEEEEEecCCCEEEEEEEEcccCeEEEEEeeHH----HHHHHHHhC--CCcEEEeccccCchhhhhhhhc-------e
Confidence 68899996 3347999999999999999998722 133445555 55 4555444322222211111 0
Q ss_pred eeeeccCCCCCHHHHHHHHH-hhhcccCCCCCchhhHHhhhhccccCCchHHHHHHHHHHHHHhhcccchhhhhhccCCc
Q 043119 79 TVKLVKSSIFSYEQAWHRLI-YLRVTGMDDGLSIKERICYLNSMMDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNA 157 (792)
Q Consensus 79 ~v~~~~~~~F~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~l~s~~~~~~~~~i~Algall~yl~~~~~~~~l~~~~~~~~ 157 (792)
.++..+.+.|+...+...+. ++....+ ++.+. .....+++|+|+++.|++.++. ..
T Consensus 188 ~~~~~~~~~f~~~~~~~~l~~~~~~~~l-~~~~~------------~~~~~~~~a~~~ll~Y~~~t~~----------~~ 244 (843)
T COG0249 188 FVVRLPASFFDEDDAEEILSEYFGVRDL-DGFGL------------ISTPLALSAAGALLSYLKDTQK----------TF 244 (843)
T ss_pred eeeecchhhcCccHHHHHHHHHhCcccc-ccccc------------ccchHHHHHHHHHHHHHHHhhh----------cc
Confidence 34566777898888877776 4443333 22222 1247889999999999976532 22
Q ss_pred cccccceEEEccCCcEEecHHHHHhccCccCCCCCCCCCCCCcCccccHhhhccccCCchhhHHHHHHhhccCCChHHHH
Q 043119 158 SITIDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLN 237 (792)
Q Consensus 158 ~~~i~~~~~~~~~~~m~iD~~Tl~~LeI~~~~~~~s~~~~g~~k~~~SLf~lLN~t~T~~G~RLLr~wL~~Pl~d~~~I~ 237 (792)
.+++..+..+...++|.||.+|++||||+++.. |.+++| |||++||+|.|+||+|+|++||.+|++|.++|+
T Consensus 245 l~~~~~~~~~~~~~~m~lD~~t~~nLEl~~~~~-------~~~~~g-SL~~~ld~t~T~mG~RlL~~wl~~PL~~~~~I~ 316 (843)
T COG0249 245 LPHIQIIQRYDLEDYMVLDAATRRNLELFSNLR-------GNGKKG-SLFWLLDRTVTPMGSRLLKRWLLQPLLDKEEIE 316 (843)
T ss_pred ccccccceeeccCcEEEEcHHHHhcccccccCC-------CCCCCC-cHHHHhccCCCchhHHHHHHHhhCcccCHHHHH
Confidence 467788999999999999999999999999875 234455 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCHHHHHHHHHhcccCCChhHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCchH-HHHHHHh
Q 043119 238 SRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISES-LREQLRL 316 (792)
Q Consensus 238 ~R~daVe~l~~~~~l~~~l~~~Lk~i~Dieril~ri~~~~~~~~~~d~~~l~~~i~~l~~l~~~l~~~~~~~-l~~~l~~ 316 (792)
.|||+|++|..+..+++.++..|++++|++|+++|+..++ .+++|+..+.+++..+..+.+.+.....+. +...
T Consensus 317 ~Rld~Ve~l~~~~~l~~~L~~~L~~v~DleRl~~Rl~~~~--~~~rDl~~l~~~l~~~~~i~~~l~~~~~~~~l~~~--- 391 (843)
T COG0249 317 ERLDAVEELKDNPELREKLREMLKKVPDLERLLSRLSLGR--ASPRDLLRLRDSLEKIPEIFKLLSSLKSESDLLLL--- 391 (843)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhcCcCHHHHHHHHHcCC--CChhhHHHHHHHHHHHHHHHHHHhccccchhhhHH---
Confidence 9999999999999999999999999999999999999864 789999999999999988888775433221 1110
Q ss_pred hchhHHHHHHHhhhHhHHHHHHHHHhhhccCcccccccCcccccCcChhHHHHHHHHHhhHHHHHHHHHHHHhhCccccc
Q 043119 317 LNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCK 396 (792)
Q Consensus 317 ~~~~l~~~~~~~i~~~l~~i~~~i~~~Id~~~~~~~~~~~~Ik~g~~~eLD~lr~~~~~l~~~L~~~~~~~~~~l~~~~~ 396 (792)
...+. .++ .+..+..++...|..+++..... ++|+.|++.+||++|..+++..+++.++...+..+...
T Consensus 392 -----~~~i~-~~~-~~~e~~~ll~~~i~~~~~~~~~~-~ii~~g~~~eLd~lr~~~~~~~~~i~~le~~~r~~~gi--- 460 (843)
T COG0249 392 -----LEDIE-SLD-YLAELLELLETAINEDPPLAVRD-GIIKEGYNIELDELRDLLNNAKEWIAKLELEERERTGI--- 460 (843)
T ss_pred -----hhhhh-ccc-cHHHHHHHHHHHhhhcchhhcch-hHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---
Confidence 01111 111 24467777788888777654443 68999999999999999999999999887665554322
Q ss_pred ccccCeEEEEcccceEEEEeccccchhhhhhcCCceEEEEeecCCeeEEEEeChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043119 397 EMFVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRD 476 (792)
Q Consensus 397 ~~~~~~i~~~~~~Gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~i~~~ 476 (792)
.+.++.|+...||+++++.. ....+|+. |...++.+ +..+|.|+++++++.++.++..++..+|.+++.+
T Consensus 461 --~slki~~n~v~Gy~ievt~~-----~~~~~p~~-~ir~qt~k--n~~rf~t~el~~~e~~i~~a~~~i~~lE~~l~~~ 530 (843)
T COG0249 461 --KSLKIKYNKVYGYYIEVTKS-----NAKLVPDD-YIRRQTLK--NAERFTTPELKELEEKLLDAEEKILALEYELFDE 530 (843)
T ss_pred --chhhhhhhccceeEEEechh-----ccccCchH-HHHHHHHh--cceEecCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23578899999999998643 23345542 12222223 3457999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCceecCCCcEEEecccceeeecccCc-eeccceeecCCCcEE
Q 043119 477 LVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTVDT-FIPNDTRIDNDGRIN 555 (792)
Q Consensus 477 l~~~~~~~~~~l~~~~~~i~~lD~~~s~a~~a~~~~~~~P~~~~~~~l~i~~~~hp~~~~~~~~-~v~n~~~~~~~~~~~ 555 (792)
+.+.+..|.+.|+.+..++|+|||++|||..|...+||||+++++..+.|++||||++|...+. |||||+.++..++++
T Consensus 531 ~~~~i~~~~~~l~~~a~aLa~lD~l~slA~~a~~~~y~rP~~~~~~~l~i~~gRHPvvE~~~~~~fVpNd~~L~~~~~i~ 610 (843)
T COG0249 531 LREKILAHINELQALAKALAELDVLSSLAEIAAEQNYVRPEFVDSNDLEIKEGRHPVVEAVLDNGFVPNDIDLSGNRRII 610 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceecCCCCEEEEecCcchhhhhccCCcccCceeeCCCceEE
Confidence 9999999999999999999999999999999999999999999886699999999999976654 999999999889999
Q ss_pred EEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeeccc--------ccchhhccchhHHHHHHHHHHHHhCCCCeEE
Q 043119 556 IITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLC 627 (792)
Q Consensus 556 ~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~--------~~~~~~~~s~f~~e~~~~~~~l~~~~~~slv 627 (792)
+|||||||||||||||+|++++|||+||||||++|.++++| .+++..|.||||+||.+++.||.+||++|||
T Consensus 611 lITGPNM~GKSTylRQvali~imAQiGsfVPA~~A~i~ivD~IfTRiGa~DDL~~G~STFMvEM~Eta~IL~~AT~~SLv 690 (843)
T COG0249 611 LITGPNMGGKSTYLRQVALIVILAQIGSFVPAEKARIGIVDRIFTRIGAADDLASGRSTFMVEMLETANILDNATERSLV 690 (843)
T ss_pred EEECCCCCccHHHHHHHHHHHHHHHcCCCeeHHHccccccceeeecccccchhhccccHHHHHHHHHHHHHHhCCCCcEE
Confidence 99999999999999999999999999999999999999999 5678899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhcCCCCCCCceeEEEEEEeeccCCCCCCCceEEeEE
Q 043119 628 LLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYR 707 (792)
Q Consensus 628 llDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~y~ 707 (792)
||||+||||++.||.+||||+++||.++ .+|.+||||||+|+++.. ...+++.|+||.+...+ ++++|+|+
T Consensus 691 ilDEiGRGTsT~DGlaIA~Av~eyL~~~-~~~~tLFATHy~ELt~l~--~~~~~v~N~h~~~~e~~------~~i~Fl~k 761 (843)
T COG0249 691 ILDEIGRGTSTYDGLAIAWAVLEYLHEK-IGCRTLFATHYHELTELE--EKLPQVKNYHMSAVEEG------GDITFLYK 761 (843)
T ss_pred EEecccCCCCcchhHHHHHHHHHHHHhc-cCceEEEeccHHHHHHhh--hcccccceeEEEEEEcC------CceEEEEE
Confidence 9999999999999999999999999986 378999999999999853 23478999999976543 56999999
Q ss_pred eecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcChhhhhhhhhcchHH-HHHHHHHHHHHHhCCCCchHHH
Q 043119 708 LVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERWSHENISAQ-DQQYKNAVEKMLAFDVLKGDLR 781 (792)
Q Consensus 708 l~~G~~~~s~gi~~A~~~g~p~~ii~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~ 781 (792)
|++|+|++|||++||++||+|.+||+||++++.++++......... .+. ......+.+.+..+|+++-..+
T Consensus 762 v~~G~a~~SyGi~VAklaGlP~~Vi~rA~~il~~le~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~tp~ 833 (843)
T COG0249 762 VKPGIADKSYGIHVAKLAGLPEEVIERAREILAELEKESRSSNLEL---NQKDLSLFPKVLKALKSLDPDELTPR 833 (843)
T ss_pred eccCCCCccHHHHHHHHhCCCHHHHHHHHHHHHHHhhcccCcccch---hhhhHhHHHHHHHHHHhCChhhcCHH
Confidence 9999999999999999999999999999999999987654111111 111 1223478899999999877665
No 2
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=100.00 E-value=1.1e-102 Score=931.39 Aligned_cols=697 Identities=30% Similarity=0.422 Sum_probs=555.3
Q ss_pred ceEEEEEEc-CCeEEEEEEEcccccEEEEEEeCCCCCCccHHHHHhhcCCceEEeCCCCChhHHHHHhhhcCCCCCCcee
Q 043119 2 QVYMACILH-GHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSEESFLSALKRSDGTTEAPTV 80 (792)
Q Consensus 2 ~v~l~~i~~-~~~iGiA~~D~stg~l~i~e~~d~~~~~~~~~~~~~~q~~P~iIi~~~~~~~~~~~~l~~~~~~~~~~~v 80 (792)
++||+++.. ++.+|+||+|++||+|+++++.. ..+...+.+.+|..|+.+........ ... ...+
T Consensus 128 ~~yl~ai~~~~~~~Gia~~D~stg~~~~~~~~~------~~L~~~l~~~~P~Eil~~~~~~~~~~---~~~-----~~~~ 193 (854)
T PRK05399 128 NNYLAAIAQDGGGYGLAYLDLSTGEFRVTELDE------EELLAELARLNPAEILVPEDFSEDEL---LLL-----RRGL 193 (854)
T ss_pred CcEEEEEEECCCeEEEEEEECCCCeEEEEEEcH------HHHHHHHHhcCCcEEEEcCCcchhhH---hhc-----cccc
Confidence 578888855 67899999999999999999822 22333445667865444433222221 111 0123
Q ss_pred eeccCCCCCHHHHHHHHHhh-hcccCCCCCchhhHHhhhhccccCCchHHHHHHHHHHHHHhhcccchhhhhhccCCccc
Q 043119 81 KLVKSSIFSYEQAWHRLIYL-RVTGMDDGLSIKERICYLNSMMDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASI 159 (792)
Q Consensus 81 ~~~~~~~F~~~~~~~~l~~l-~~~~~~~~~~~~~~~~~l~s~~~~~~~~~i~Algall~yl~~~~~~~~l~~~~~~~~~~ 159 (792)
..++...|+.+.+...|..+ ..... ++ + ......+++|+||+++|++.++.. ...
T Consensus 194 ~~~~~~~f~~~~~~~~l~~~f~~~~~-~~------------~-~~~~~~~~~a~~all~Yl~~~~~~----------~~~ 249 (854)
T PRK05399 194 RRRPPWEFDLDTAEKRLLEQFGVASL-DG------------F-GVDLPLAIRAAGALLQYLKETQKR----------SLP 249 (854)
T ss_pred eeccccccChHHHHHHHHHHhCcCCc-cc------------c-CCCCHHHHHHHHHHHHHHHHhchh----------hhh
Confidence 33445578888888777633 21111 11 1 114567899999999999876431 123
Q ss_pred cccceEEEccCCcEEecHHHHHhccCccCCCCCCCCCCCCcCccccHhhhccccCCchhhHHHHHHhhccCCChHHHHHH
Q 043119 160 TIDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSR 239 (792)
Q Consensus 160 ~i~~~~~~~~~~~m~iD~~Tl~~LeI~~~~~~~s~~~~g~~k~~~SLf~lLN~t~T~~G~RLLr~wL~~Pl~d~~~I~~R 239 (792)
++..+..+..+++|.||++|++||||+++.. | +++| |||+++|||+||||+|+||+||++|++|+++|++|
T Consensus 250 ~~~~~~~~~~~~~m~lD~~tl~~Lei~~~~~-------~-~~~g-SL~~~ld~t~T~~G~RlLr~wl~~Pl~d~~~I~~R 320 (854)
T PRK05399 250 HLRSPKRYEESDYLILDAATRRNLELTENLR-------G-GRKN-SLLSVLDRTVTAMGGRLLRRWLHRPLRDREAIEAR 320 (854)
T ss_pred ccCCCEEECCCCEEEcCHHHHHhccCCccCC-------C-CCCC-cHHHHhccCCCcHHHHHHHHHHhCcCCCHHHHHHH
Confidence 4567888999999999999999999999743 1 2344 99999999999999999999999999999999999
Q ss_pred HHHHHHHHcCHHHHHHHHHhcccCCChhHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhhch
Q 043119 240 LNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNF 319 (792)
Q Consensus 240 ~daVe~l~~~~~l~~~l~~~Lk~i~Dieril~ri~~~~~~~~~~d~~~l~~~i~~l~~l~~~l~~~~~~~l~~~l~~~~~ 319 (792)
||+|++|.+++.++..++..|++++|++|+++|+..++ .+++||..+.+++..+..+.+.+.....+.+
T Consensus 321 ~d~Ve~l~~~~~~~~~l~~~L~~i~Dlerll~ri~~~~--~~~~dl~~l~~~l~~~~~l~~~l~~~~~~~l--------- 389 (854)
T PRK05399 321 LDAVEELLEDPLLREDLRELLKGVYDLERLLSRIALGR--ANPRDLAALRDSLEALPELKELLAELDSPLL--------- 389 (854)
T ss_pred HHHHHHHHhCHHHHHHHHHHHhcCCCHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHHhcCcHHH---------
Confidence 99999999999999999999999999999999998753 6899999999999888888777754222222
Q ss_pred hHHHHHHHhhhHhHHHHHHHHHhhhccCcccccccCcccccCcChhHHHHHHHHHhhHHHHHHHHHHHHhhCcccccccc
Q 043119 320 DIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMF 399 (792)
Q Consensus 320 ~l~~~~~~~i~~~l~~i~~~i~~~Id~~~~~~~~~~~~Ik~g~~~eLD~lr~~~~~l~~~L~~~~~~~~~~l~~~~~~~~ 399 (792)
..+...+ ..+..+.+.+.++|+.+.......++.|++|++++||++|+.++++.+++.++..++..++.. .
T Consensus 390 ---~~l~~~l-~~~~~l~~~i~~~i~~~~~~~~~~~~~i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~-----~ 460 (854)
T PRK05399 390 ---AELAEQL-DPLEELADLLERAIVEEPPLLIRDGGVIADGYDAELDELRALSDNGKDWLAELEARERERTGI-----S 460 (854)
T ss_pred ---HHHHhhc-ccHHHHHHHHHHHHccCCchhcccCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----C
Confidence 1222222 245666777888888765433333567999999999999999999999999887666554321 2
Q ss_pred cCeEEEEcccceEEEEeccccchhhhhhcCC-ceEEEEeecCCeeEEEEeChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043119 400 VPCIVYIHQIGYLMCIFEEKLDDTTLEQLQG-FEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLV 478 (792)
Q Consensus 400 ~~~i~~~~~~Gy~i~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~i~~~l~ 478 (792)
.+++.|++..||+++++.. ....+|+ |.. .+ ...+..+|+|++++++++++.++..++.+++.++++++.
T Consensus 461 ~l~~~~~~~~gy~iev~~~-----~~~~vp~~~~~--~~--s~~~~~rf~t~~l~~l~~~l~~~~~~~~~~e~~i~~~l~ 531 (854)
T PRK05399 461 SLKVGYNKVFGYYIEVTKA-----NLDKVPEDYIR--RQ--TLKNAERYITPELKELEDKILSAEEKALALEYELFEELR 531 (854)
T ss_pred ceEEEEcCceeEEEEEEcc-----hhhhCChhhhh--ee--eccCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999743 2345675 422 22 123456799999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCceecCCCcEEEecccceeeecc--cCceeccceeecCCCcEEE
Q 043119 479 SHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMT--VDTFIPNDTRIDNDGRINI 556 (792)
Q Consensus 479 ~~~~~~~~~l~~~~~~i~~lD~~~s~a~~a~~~~~~~P~~~~~~~l~i~~~~hp~~~~~--~~~~v~n~~~~~~~~~~~~ 556 (792)
+.+.++.+.|.++++.+|+|||++|+|.+|..++||||+|.+++.+.+++||||++|.. ...|||||+.++.++++++
T Consensus 532 ~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~~~l~i~~~rHP~le~~~~~~~~vpnd~~l~~~~~~~i 611 (854)
T PRK05399 532 EEVAEHIERLQKLAKALAELDVLASLAEVAEENNYVRPEFTDDPGIDIEEGRHPVVEQVLGGEPFVPNDCDLDEERRLLL 611 (854)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCccccEEeCCCCEEEEeccCcEEecccCCCceEecceeeCCCCcEEE
Confidence 99999999999999999999999999999999999999999888899999999999875 4689999999996689999
Q ss_pred EEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeeccc--------ccchhhccchhHHHHHHHHHHHHhCCCCeEEE
Q 043119 557 ITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCL 628 (792)
Q Consensus 557 ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~--------~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvl 628 (792)
||||||||||||||++|++++|||+||||||++++++++| .+++..+.|||+.||.+++.|+..+|++||||
T Consensus 612 iTGpN~~GKSt~lr~v~l~~ilAq~G~~VPa~~a~i~~~d~I~triga~d~i~~g~STF~~E~~~~~~il~~at~~sLvl 691 (854)
T PRK05399 612 ITGPNMAGKSTYMRQVALIVLLAQIGSFVPAESARIGIVDRIFTRIGASDDLASGRSTFMVEMTETANILNNATERSLVL 691 (854)
T ss_pred EECCCCCCcHHHHHHHHHHHHHHhcCCceeccceEecccCeeeeccCcccccccCcccHHHHHHHHHHHHHhCCCCcEEE
Confidence 9999999999999999999999999999999999999999 56788899999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhcCCCCCCCceeEEEEEEeeccCCCCCCCceEEeEEe
Q 043119 629 LDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRL 708 (792)
Q Consensus 629 lDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~y~l 708 (792)
+|||||||++.||.++++++++++.+.. ++++||+|||+++.+.. ...++|.++||.+...+ ++++|+|||
T Consensus 692 lDE~GrGTs~~dg~aia~aile~l~~~~-~~~~l~aTH~~el~~l~--~~~~~v~n~~m~~~~~~------~~l~flYkl 762 (854)
T PRK05399 692 LDEIGRGTSTYDGLSIAWAVAEYLHDKI-GAKTLFATHYHELTELE--EKLPGVKNVHVAVKEHG------GDIVFLHKV 762 (854)
T ss_pred EecCCCCCCcchhHHHHHHHHHHHHhcC-CceEEEEechHHHHHHh--hhcCCeEEEEEEEEEeC------CeEEEEEEe
Confidence 9999999999999999999999999863 58999999999998742 34578999999987432 689999999
Q ss_pred ecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcChhhhhhhhhcchHHHH-----HHHHHHHHHHhCCCCchHHHHH
Q 043119 709 VPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERWSHENISAQDQ-----QYKNAVEKMLAFDVLKGDLRLF 783 (792)
Q Consensus 709 ~~G~~~~s~gi~~A~~~g~p~~ii~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~d~~~~~~~~~ 783 (792)
.+|+|++||||+||+++|+|++||+||+++++.+++....... .....++.+ ..+.+.++++++|+++-.....
T Consensus 763 ~~G~~~~SyGi~VA~laGlP~~VI~rA~~i~~~le~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tp~~a 841 (854)
T PRK05399 763 VPGAADKSYGIHVAKLAGLPASVIKRAREILAQLESASEKAKA-ASAEEDQLSLFAEPEESPLLEALKALDPDNLTPREA 841 (854)
T ss_pred CcCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhhccccccc-ccccccccccccccccHHHHHHHHcCCCCCCCHHHH
Confidence 9999999999999999999999999999999999853211000 000000000 1345888999999976544444
Q ss_pred H
Q 043119 784 F 784 (792)
Q Consensus 784 ~ 784 (792)
+
T Consensus 842 ~ 842 (854)
T PRK05399 842 L 842 (854)
T ss_pred H
Confidence 4
No 3
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=100.00 E-value=8.1e-102 Score=917.74 Aligned_cols=692 Identities=27% Similarity=0.389 Sum_probs=544.4
Q ss_pred ceEEEEEEc-CCeEEEEEEEcccccEEEEEEeCCCCCCccHHHHHhhcCCce-EEeCCCCChhHHHHHhhhcCCCCCCce
Q 043119 2 QVYMACILH-GHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQ-IIYTSTKSEESFLSALKRSDGTTEAPT 79 (792)
Q Consensus 2 ~v~l~~i~~-~~~iGiA~~D~stg~l~i~e~~d~~~~~~~~~~~~~~q~~P~-iIi~~~~~~~~~~~~l~~~~~~~~~~~ 79 (792)
++||+++.. ++.+|+||+|+|||+|++.++.+++ ....++. +.+|. +|+.+.. .......+
T Consensus 121 ~nyl~ai~~~~~~~gla~~D~sTG~~~~~~~~d~~---~l~~~l~--~~~P~Eil~~~~~-~~~~~~~~----------- 183 (840)
T TIGR01070 121 DNLLAAIAQESNGFGLATLDLTTGEFKVTELADKE---TLYAELQ--RLNPAEVLLAEDL-SEMEAIEL----------- 183 (840)
T ss_pred CceEEEEEeCCCeEEEEEEEccccEEEEEEecCHH---HHHHHHh--ccCCeEEEEcCCC-ChHHHHHh-----------
Confidence 589999974 5679999999999999999986542 1223344 45675 4544332 22111111
Q ss_pred eeeccCCCCCHHHHHHHHH-hhhcccCCCCCchhhHHhhhhccccCCchHHHHHHHHHHHHHhhcccchhhhhhccCCcc
Q 043119 80 VKLVKSSIFSYEQAWHRLI-YLRVTGMDDGLSIKERICYLNSMMDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNAS 158 (792)
Q Consensus 80 v~~~~~~~F~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~l~s~~~~~~~~~i~Algall~yl~~~~~~~~l~~~~~~~~~ 158 (792)
. .|+...+...+. ++..... ++++ ..+...+++|+||+++|++.++.. ..
T Consensus 184 -~-----~f~~~~~~~~l~~~f~~~~l-~~~~------------~~~~~~~~~a~g~ll~Yl~~~~~~----------~~ 234 (840)
T TIGR01070 184 -R-----EFRKDTAVMSLEAQFGTEDL-GGLG------------LRNAPLGLTAAGCLLQYAKRTQRT----------AL 234 (840)
T ss_pred -H-----hcchhHHHHHHHHhcCccch-hhcC------------CCCCHHHHHHHHHHHHHHHHhChh----------hh
Confidence 0 344444444443 2221111 1111 113467899999999999875421 12
Q ss_pred ccccceEEEccCCcEEecHHHHHhccCccCCCCCCCCCCCCcCccccHhhhccccCCchhhHHHHHHhhccCCChHHHHH
Q 043119 159 ITIDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNS 238 (792)
Q Consensus 159 ~~i~~~~~~~~~~~m~iD~~Tl~~LeI~~~~~~~s~~~~g~~k~~~SLf~lLN~t~T~~G~RLLr~wL~~Pl~d~~~I~~ 238 (792)
.++..++.+..+++|.||++|++||||+++.. |+ ++ +|||+++|+|+|+||+|+||+||++|++|+++|++
T Consensus 235 ~~~~~~~~~~~~~~m~lD~~t~~~LEl~~~~~-------~~-~~-gSL~~~ld~t~T~~G~RlLr~wl~~Pl~d~~~I~~ 305 (840)
T TIGR01070 235 PHLQPVRLYELQDFMQLDAATRRNLELTENLR-------GG-KQ-NTLFSVLDETKTAMGSRLLKRWLHRPLRDREVLEA 305 (840)
T ss_pred hhCCCcEEECCCCEEEeCHHHHHhccCCccCC-------CC-CC-CcHHHHHhhcCCHHHHHHHHHHhhCCCCCHHHHHH
Confidence 35667889999999999999999999998764 11 33 49999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCHHHHHHHHHhcccCCChhHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhhc
Q 043119 239 RLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLN 318 (792)
Q Consensus 239 R~daVe~l~~~~~l~~~l~~~Lk~i~Dieril~ri~~~~~~~~~~d~~~l~~~i~~l~~l~~~l~~~~~~~l~~~l~~~~ 318 (792)
|||+|++|.++..++..++..|++++|++|+++|+..+ ..+++||..+.+++..+..+.+.+.....+.+.
T Consensus 306 Rld~Ve~l~~~~~l~~~l~~~L~~i~Dlerll~ri~~~--~~~~~dl~~l~~~l~~~~~l~~~l~~~~~~~l~------- 376 (840)
T TIGR01070 306 RQDTVEVLLRHFFLREGLRPLLKEVGDLERLAARVALG--NARPRDLARLRTSLEQLPELRALLEELEGPTLQ------- 376 (840)
T ss_pred HHHHHHHHHhCHHHHHHHHHHhccCcCHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH-------
Confidence 99999999999999999999999999999999999875 378999999999998888887777542222221
Q ss_pred hhHHHHHHHhhhHhHHHHHHHHHhhhccCcccccccCcccccCcChhHHHHHHHHHhhHHHHHHHHHHHHhhCccccccc
Q 043119 319 FDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEM 398 (792)
Q Consensus 319 ~~l~~~~~~~i~~~l~~i~~~i~~~Id~~~~~~~~~~~~Ik~g~~~eLD~lr~~~~~l~~~L~~~~~~~~~~l~~~~~~~ 398 (792)
.+...+ ..+..+.+.+.++|+.+.......+..|++|++++||++|+.++++.+++.++..++.++.. .
T Consensus 377 -----~l~~~l-~~~~~l~~~i~~~i~~~~~~~~~~~~~I~~g~~~~Ld~lr~~~~~~~~~l~~l~~~~~~~~~-----i 445 (840)
T TIGR01070 377 -----ALAAQI-DDFSELLELLEAALIENPPLVVRDGGLIREGYDEELDELRAASREGTDYLARLEARERERTG-----I 445 (840)
T ss_pred -----HHHHhc-ccHHHHHHHHHHHHhcCCccccccCCeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----C
Confidence 111222 24555666777888766544333356799999999999999999999999988766655321 1
Q ss_pred ccCeEEEEcccceEEEEeccccchhhhhhcCCceEEEEeecCCeeEEEEeChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043119 399 FVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLV 478 (792)
Q Consensus 399 ~~~~i~~~~~~Gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~i~~~l~ 478 (792)
.++++.|++..||+++++.. ....+|+. +...+.. ....+|.+++++++++++.++..++.+++.+++.+|.
T Consensus 446 ~~lk~~~~~~~gy~iev~~~-----~~~~vp~~-~i~~~s~--~~~~rf~tpel~~l~~~l~~~~~~~~~~e~~i~~~L~ 517 (840)
T TIGR01070 446 PTLKVGYNAVFGYYIEVTRG-----QLHLVPAH-YRRRQTL--KNAERYITPELKEKEDKVLEAEGKILALEKELFEELR 517 (840)
T ss_pred CceEEEEecCceEEEEEehh-----hhhcCCcc-eEEEEec--cCceEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13467888899999999742 23456753 2222222 2345789999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCceecCCCcEEEecccceeeecc-cCceeccceeecCCCcEEEE
Q 043119 479 SHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMT-VDTFIPNDTRIDNDGRINII 557 (792)
Q Consensus 479 ~~~~~~~~~l~~~~~~i~~lD~~~s~a~~a~~~~~~~P~~~~~~~l~i~~~~hp~~~~~-~~~~v~n~~~~~~~~~~~~l 557 (792)
+.+..+.+.|.++.+.+++|||++|+|.+|..++||||++++++.+.|++||||++|.. ...|||||+.++.+.++++|
T Consensus 518 ~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~~~i~i~~~RHP~le~~~~~~~VpNdi~l~~~~~~~iI 597 (840)
T TIGR01070 518 ELLKKYLEALQEAARALAELDVLANLAEVAETLHYTRPRFGDDPQLRIREGRHPVVEQVLRTPFVPNDLEMAHNRRMLLI 597 (840)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCceecCCCcEEEEeeECHHHHhccCCCeEeeeeecCCCccEEEE
Confidence 99999999999999999999999999999999999999999888899999999999853 25799999999977899999
Q ss_pred EcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeeccc--------ccchhhccchhHHHHHHHHHHHHhCCCCeEEEE
Q 043119 558 TGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLL 629 (792)
Q Consensus 558 tGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~--------~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvll 629 (792)
|||||||||||||++|++++|||+||||||++++++++| .+++..+.|||+.||.+++.|++.++++||||+
T Consensus 598 TGPNmgGKSt~lrqvali~imAq~G~~VPA~~a~i~~~D~Iftrig~~d~i~~g~STF~~Em~e~a~IL~~at~~sLvll 677 (840)
T TIGR01070 598 TGPNMGGKSTYMRQTALIALLAQIGSFVPAESAELPLFDRIFTRIGASDDLASGRSTFMVEMTEAANILHNATENSLVLF 677 (840)
T ss_pred ECCCCCCchHHHHHHHHHHHHHhcCCCccchheEeccccEEEEecCcccchhcCcchHHHHHHHHHHHHhhCCCCEEEEE
Confidence 999999999999999999999999999999999999999 567888999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhcCCCCCCCceeEEEEEEeeccCCCCCCCceEEeEEee
Q 043119 630 DEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLV 709 (792)
Q Consensus 630 DE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~y~l~ 709 (792)
||+||||++.||.+|++++++++.+. .++.++|+|||+++.... ...+++.++||.+...+ ++++|+||+.
T Consensus 678 DE~GrGT~~~dg~aia~ai~e~l~~~-~~~~~~~~TH~~eL~~l~--~~~~~v~n~~~~~~~~~------~~l~flYkl~ 748 (840)
T TIGR01070 678 DEIGRGTSTYDGLALAWAIAEYLHEH-IRAKTLFATHYFELTALE--ESLPGLKNVHVAALEHN------GTIVFLHQVL 748 (840)
T ss_pred ccCCCCCChhHHHHHHHHHHHHHHhc-CCCEEEEEcCchHHHHHh--hhCCCeEEEEEEEEEEC------CcEEEEEEEC
Confidence 99999999999999999999999984 378999999999998743 34578999999986432 6899999999
Q ss_pred cCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcChh-hh-hhhhh-cch-HHHHH-----HHHHHHHHHhCCCCchHH
Q 043119 710 PGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKH-VE-RWSHE-NIS-AQDQQ-----YKNAVEKMLAFDVLKGDL 780 (792)
Q Consensus 710 ~G~~~~s~gi~~A~~~g~p~~ii~~A~~~~~~~~~~~~-~~-~~~~~-~~~-~~~~~-----~~~~~~~~~~~d~~~~~~ 780 (792)
+|++++|||++||+++|+|++||+||+++++.+++... .. ....+ ... .+... -+.+.+.+.++|+++-..
T Consensus 749 ~G~~~~Sygi~VA~laGlP~~VI~rA~~il~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~tp 828 (840)
T TIGR01070 749 PGPASKSYGLAVAALAGLPKEVIARARQILTQLEARSTESEAPQRKAQTSAPEQISLFDEAETHPLLEELAKLDPDDLTP 828 (840)
T ss_pred CCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHhccccccccccccccccchhhhhccccCCHHHHHHHHcCCCCCCCH
Confidence 99999999999999999999999999999999986431 10 00000 000 00000 124778899999986655
Q ss_pred HHHHH
Q 043119 781 RLFFQ 785 (792)
Q Consensus 781 ~~~~~ 785 (792)
..-++
T Consensus 829 ~~al~ 833 (840)
T TIGR01070 829 LQALN 833 (840)
T ss_pred HHHHH
Confidence 44443
No 4
>KOG0221 consensus Mismatch repair ATPase MSH5 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=4.3e-103 Score=833.02 Aligned_cols=758 Identities=38% Similarity=0.595 Sum_probs=626.9
Q ss_pred ceEEEEEEcCCeEEEEEEEcccccEEEEEEeCCCCCCccHHHHHhhcCCceEEeCCCCChhHHHHHhhhcCCCCC-C---
Q 043119 2 QVYMACILHGHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSEESFLSALKRSDGTTE-A--- 77 (792)
Q Consensus 2 ~v~l~~i~~~~~iGiA~~D~stg~l~i~e~~d~~~~~~~~~~~~~~q~~P~iIi~~~~~~~~~~~~l~~~~~~~~-~--- 77 (792)
++.||+.+.++++|+||||.++..+.++....+. ..+..++..+...+|..++.++..+.+++..+.+.-..+. +
T Consensus 49 Eivlcv~f~~G~LG~ayyd~s~~tlk~m~d~~~~-~~~~~l~r~ldd~~p~s~~~~~~qd~~~i~fl~~~~s~~~vp~~~ 127 (849)
T KOG0221|consen 49 EIVLCVLFNSGYLGIAYYDTSDSTLKFMPDAPDH-ESLKLLQRVLDDINPQSVVTSAKQDENMIRFLGKLASQEHVPPKR 127 (849)
T ss_pred hEEEEEEecCCeeeeEeeeccchHHHhcCCchhh-hHHHHHHHHhhccCchhhhhhHhhhHHHHHHhccCCccccCCCCC
Confidence 5789999999999999999999999988755443 2345566666778999888888778888776653211100 0
Q ss_pred ceeeeccCCCCCHHHHHHHHHhhhcccCCCCCchhhHHhhhhccc-----------------cCCchHHHHHHHHHHHHH
Q 043119 78 PTVKLVKSSIFSYEQAWHRLIYLRVTGMDDGLSIKERICYLNSMM-----------------DMGSEVQVRASGGLLAVL 140 (792)
Q Consensus 78 ~~v~~~~~~~F~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~s~~-----------------~~~~~~~i~Algall~yl 140 (792)
+.+...+..+|..+..++++.+=.....++.+...+++.|+.+.+ .++-...++|+|+++.++
T Consensus 128 ~~~if~~~~t~~~ei~k~~~l~~~~~f~p~~l~~~~~~~f~~s~i~~D~l~t~~~~~~it~~~~~i~~~~r~~g~ll~fl 207 (849)
T KOG0221|consen 128 PEIIFLPSVTFGLEISKQRLLSGNYSFIPDALTATEKILFLSSIIPFDCLLTEEDKYIITKMRFDIEAVVRALGGLLKFL 207 (849)
T ss_pred cceeeccchhhHHHHHHHHhcCCccccChHHHhhhHHhhhhccccccccccCCCCceEEEeeccchHHHHHhhhhHHhhc
Confidence 011111222222222233322111111122222333334444322 223466799999999999
Q ss_pred hhcccchhhhhhccCCccccccceEEEccCCcEEecHHHHHhccCccCCCCCCCCCCCCcCccccHhhhccccCCchhhH
Q 043119 141 ENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRR 220 (792)
Q Consensus 141 ~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~m~iD~~Tl~~LeI~~~~~~~s~~~~g~~k~~~SLf~lLN~t~T~~G~R 220 (792)
.++++...+.+ .+++.+|..++++.+.+.|.||.+|+++|+||++++||++.+.+ .++|.|||+++|+|.+..|+|
T Consensus 208 ~~~rigv~l~~---~~v~~pI~gik~f~l~~lv~iD~nTisaL~Ifp~e~~~~~~k~~-~~~g~Slf~l~n~c~s~~g~k 283 (849)
T KOG0221|consen 208 GRRRIGVELED---YNVSVPILGIKKFMLTHLVNIDQNTISALQIFPSESHPSKVKSG-LKEGLSLFGLLNRCHSKWGEK 283 (849)
T ss_pred ccceeeeeecc---ccccccccceeEEeecceeeeccchHHHHHhcccccccchhhhh-hhcchhHHHHHHHHhhHHHHH
Confidence 99988766554 45667889999999999999999999999999999999865533 457789999999999999999
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHHHcC--HHHHHHHHHhcccCCChhHHHHhhcCCCCccCHHHHHHHHHHHHHHHHH
Q 043119 221 LLRNWFLRPILDLENLNSRLNAISFFLCS--EELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHV 298 (792)
Q Consensus 221 LLr~wL~~Pl~d~~~I~~R~daVe~l~~~--~~l~~~l~~~Lk~i~Dieril~ri~~~~~~~~~~d~~~l~~~i~~l~~l 298 (792)
+||.|+.+|++|..+|..||++|++|... -++.+.+...|++++|+.-+++|++.++ .+..+|..+++++...+.+
T Consensus 284 ~Lr~Wf~nPttd~~~l~sR~~~i~~fl~~qNa~~~~~Ls~~lgr~k~~~~~~~~~~sg~--t~l~~W~~~~stv~~~~~i 361 (849)
T KOG0221|consen 284 LLRLWFTNPTTDLGELSSRLDVIQFFLLPQNADMAQMLSRLLGRIKNVPLILKRMKSGH--TKLSDWQVLYSTVYSALGI 361 (849)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhcccHHHHHHHHhcCC--ceechHHHHHHHHHHHHHH
Confidence 99999999999999999999999999974 4688999999999999999999999864 6788999999999999888
Q ss_pred HHHHhhcCchHHHHHHHhhchhHHHHHHHhhhHhHHHHHHHHHhhhccCcccccccCcccccCcChhHHHHHHHHHhhHH
Q 043119 299 NKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPE 378 (792)
Q Consensus 299 ~~~l~~~~~~~l~~~l~~~~~~l~~~~~~~i~~~l~~i~~~i~~~Id~~~~~~~~~~~~Ik~g~~~eLD~lr~~~~~l~~ 378 (792)
.+++.... ...++.....+....++.++...+..+||++.+...+ .+.|.+|+|++||+.|..|..++.
T Consensus 362 ~~~~rslp----------~s~~~~~~~~~~~~~~l~eia~~~g~vIdF~~S~~~~-r~Tv~~giD~elDE~r~~y~~lp~ 430 (849)
T KOG0221|consen 362 RDACRSLP----------QSIQLFRDIAQEFSDDLHEIASLIGKVIDFEGSLAEN-RFTVLPGIDPELDEKRRRYMGLPS 430 (849)
T ss_pred HHHHHhCc----------cchhhhhHHHHHHHHHHHHHHHHhhheeccccccccc-eEEecCCCChHHHHHHHHHccchH
Confidence 87774321 0112222233344467888888899999999988766 667899999999999999999999
Q ss_pred HHHHHHHHHHhhCcccccccccCeEEEEcccceEEEEeccccchhhhhhcC--CceEEEEeecCCeeEEEEeChhhHHHH
Q 043119 379 FLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQ--GFEFAFSDMDGETKRLFYHTPKTRELD 456 (792)
Q Consensus 379 ~L~~~~~~~~~~l~~~~~~~~~~~i~~~~~~Gy~i~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~ 456 (792)
.|.+++.++...+.... -+++++|.|..||+++++... .......| +|++.|.+ ..++||++.++++|+
T Consensus 431 ~Lt~vAr~e~~~L~~~~---psv~~VYIPliGfllsiprl~--~~~~~~d~~~~~~~mf~s----~E~l~~rnart~eLD 501 (849)
T KOG0221|consen 431 FLTEVARKELENLDSRI---PSVSVVYIPLIGFLLSIPRLP--SMVEASDFENGLDFMFLS----EEKLHYRNARTKELD 501 (849)
T ss_pred HHHHHHHHHHHhhCCCC---CceeEEEeeceeeEEeccccc--chhhcCCcccchHHHhcc----cceeEeecccHHhHH
Confidence 99999988877654332 236889999999999997531 11111111 25554443 567899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCceecCCCc-EEEecccceeee
Q 043119 457 NLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPL-LDIQNGRHVLQE 535 (792)
Q Consensus 457 ~~~~~~~~~i~~~~~~i~~~l~~~~~~~~~~l~~~~~~i~~lD~~~s~a~~a~~~~~~~P~~~~~~~-l~i~~~~hp~~~ 535 (792)
+.+||++.+|.+.|..|+-.|..++......+.+.....++||+++|||..|.+++|.||.++++.. +.|.+||||++|
T Consensus 502 ~~~GDIy~~i~D~et~i~~~Lq~qvl~rk~~lt~~l~laSrldvLls~a~~aa~~gy~~P~lv~e~~il~I~ngrh~l~e 581 (849)
T KOG0221|consen 502 ALLGDIYCEIRDQETLIMYQLQCQVLARKAVLTRVLDLASRLDVLLSLASAAADYGYSRPRLVPEVLILRIQNGRHPLME 581 (849)
T ss_pred HHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccHHHHHHHHcCChhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998865 799999999999
Q ss_pred cccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeeccc--------ccchhhccch
Q 043119 536 MTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSS 606 (792)
Q Consensus 536 ~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~--------~~~~~~~~s~ 606 (792)
...++||||++..+.+ |++.+|||||.||||.|||++|++++|||+||||||+.|++|++| .+.+..++||
T Consensus 582 ~~~dtfvPNst~iggdkgri~vITGpNasGKSiYlkqvglivfLahIGsFVPAe~A~IGivDrI~tri~s~esv~~gqST 661 (849)
T KOG0221|consen 582 LCADTFVPNSTEIGGDKGRIKVITGPNASGKSIYLKQVGLIVFLAHIGSFVPAEEAEIGIVDRIFTRIHSCESVSLGQST 661 (849)
T ss_pred HHHHhcCCCceeecCCCceEEEEeCCCCCCceEEEeechhhhHHHhhccccchhhhhcchHHHHHHHhhhhhhhhhhhhH
Confidence 9999999999999977 999999999999999999999999999999999999999999999 2456788999
Q ss_pred hHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCC-CcEEEEEccChhhhhcCCCCCCCceeEE
Q 043119 607 FMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDV-PPKVLVCTHLTELLNEGCLPKSERLKFY 685 (792)
Q Consensus 607 f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~-~~~~l~~TH~~~l~~~~~~~~~~~v~~~ 685 (792)
|+.++.|++.++++||.+||||+||+|+||++.||.++..+++.|...++. +|+++++||+|++.+...++..+-+++|
T Consensus 662 FmiD~~Qva~aLr~AT~~SLvlIDEfGKGT~tedGlsLlasvm~~w~~rg~~~PrifvcThfheL~ne~~L~~n~i~qfl 741 (849)
T KOG0221|consen 662 FMIDLNQVAKALRNATAQSLVLIDEFGKGTNTEDGLSLLASVMRHWLARGPTCPRIFVCTHFHELVNEQLLPQNPIVQFL 741 (849)
T ss_pred HHHhHHHHHHHHHHhhcCcEEEEhhccCCccccccHHHHHHHHHHHHhcCCCCCeEEEeccHHHhhhhccCCcchhhhhh
Confidence 999999999999999999999999999999999999999999999988763 4899999999999998888888889999
Q ss_pred EEEEeeccCCCCCCCceEEeEEeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcChhhhhhhhhcchHHHHHHHH
Q 043119 686 TMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERWSHENISAQDQQYKN 765 (792)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~~A~~~g~p~~ii~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (792)
+|.+..++ .++++|+||+.+|.+..|||+++|+.+|+|++||.||+++++.+++++++.+.+.+....+++..++
T Consensus 742 tm~vlr~~-----ge~I~flyrv~~gl~k~sfal~~ak~~glp~~vV~Ra~~v~~ai~sg~~vk~~k~~l~~~q~~~~q~ 816 (849)
T KOG0221|consen 742 TMEVLRED-----GEDIVFLYRVCEGLAKASFALHTAKQAGLPDKVVARAKEVSDAIRSGKPVKPVKDLLKKNQMENCQT 816 (849)
T ss_pred hHHHHHhc-----cCCeEEEEEeccchhhhcccchhHhhcCCCHHHHHHHHHHHHHHHcCCCchhhhhhhhhhHHHHHHH
Confidence 99987643 2789999999999999999999999999999999999999999999999999988887788888999
Q ss_pred HHHHHHhCCCCch--HHHHHH-HhhCCCC
Q 043119 766 AVEKMLAFDVLKG--DLRLFF-QDLLPSK 791 (792)
Q Consensus 766 ~~~~~~~~d~~~~--~~~~~~-~~~~~~~ 791 (792)
++++|..||...+ |++.|| |+++|+.
T Consensus 817 ~Vdkf~~lDl~lp~~d~~~f~sq~~fp~~ 845 (849)
T KOG0221|consen 817 LVDKFMKLDLELPNLDLNVFMSQEVFPAA 845 (849)
T ss_pred HHHHHHHhcccCCccceeeeecccccccc
Confidence 9999999999755 999999 9999974
No 5
>KOG0218 consensus Mismatch repair MSH3 [Replication, recombination and repair]
Probab=100.00 E-value=1.9e-89 Score=738.65 Aligned_cols=681 Identities=25% Similarity=0.363 Sum_probs=472.6
Q ss_pred eEEEEEEEcccccEEEEEEeCCCCCCccHHHHHhhcCCceEEeCCCCChhHHHHHhhhcCCCCCCceeeeccCCCCCHHH
Q 043119 13 RVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSEESFLSALKRSDGTTEAPTVKLVKSSIFSYEQ 92 (792)
Q Consensus 13 ~iGiA~~D~stg~l~i~e~~d~~~~~~~~~~~~~~q~~P~iIi~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~F~~~~ 92 (792)
+||+--+.++||++..-+|.|+- ...-++.-....+|..++.++...+.....+-+. .. .+.....+.|..++
T Consensus 311 ~vgligVqlstGevVydeFqdnf--~rseLqtrisslqP~ElLl~~~ls~qt~all~~~-~V----sve~~~~rv~r~~n 383 (1070)
T KOG0218|consen 311 KVGLIGVQLSTGEVVYDEFQDNF--ARSELQTRISSLQPIELLLNTDLSPQTVALLFKD-NV----SVELIHKRVYRLEN 383 (1070)
T ss_pred EEEEEEEecCCCcEehHhhhhhH--HHHHHHHHHhccCcceeecCCCCcHHHHHHHHhc-cc----chhhhhhhhhhchh
Confidence 79999999999999888888763 2233333333456755444444333333323221 11 01111111232222
Q ss_pred --------HHHHHHhhhcccCCCCCchhhHHhhhhccccCCchHHHHHHHHHHHHHhhcccchhhhhhccCCccccccce
Q 043119 93 --------AWHRLIYLRVTGMDDGLSIKERICYLNSMMDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSV 164 (792)
Q Consensus 93 --------~~~~l~~l~~~~~~~~~~~~~~~~~l~s~~~~~~~~~i~Algall~yl~~~~~~~~l~~~~~~~~~~~i~~~ 164 (792)
+.+.+..+. +.-.+-+........+++.++--+|.+++++.||.+-.+.+.+.. +++ -
T Consensus 384 aV~q~ikla~e~~q~f~-----~~k~~l~gs~ii~li~nl~~psvic~la~~is~lkefnlE~~l~~---psf------~ 449 (1070)
T KOG0218|consen 384 AVVQAIKLANEKIQNFE-----DDKEMLEGSEIICLIMNLSHPSVICLLAKLISHLKEFNLEQVLLI---PSF------Y 449 (1070)
T ss_pred HHHHHHHHHHHHHhhhh-----hhhhhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHhchHHheec---ccc------c
Confidence 333332221 111111111122234455555455669999999976433211111 111 2
Q ss_pred EEEccCCcEEecHHHHHhccCccCCCCCCCCCCCCcCccccHhhhccccCCchhhHHHHHHhhccCCChHHHHHHHHHHH
Q 043119 165 IEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAIS 244 (792)
Q Consensus 165 ~~~~~~~~m~iD~~Tl~~LeI~~~~~~~s~~~~g~~k~~~SLf~lLN~t~T~~G~RLLr~wL~~Pl~d~~~I~~R~daVe 244 (792)
..++...+|.|+++|+++||||.|+.+. ++.+||||+||||.|.+|.|+||.|+.+||+|.+.|++|+|||+
T Consensus 450 s~~ss~e~Mtls~ntLq~Leif~nqtd~--------~~kGSLfwvldhT~TsfG~RmLr~WvtkPLvd~~~I~eRLDAVe 521 (1070)
T KOG0218|consen 450 SPFSSKEHMTLSPNTLQSLEIFTNQTDG--------SEKGSLFWVLDHTRTSFGLRMLREWVTKPLVDVHQIEERLDAVE 521 (1070)
T ss_pred CcccccceeeechhhhhceeeeeecCCC--------CcccceEEEeccchhHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 3455677899999999999999998653 23359999999999999999999999999999999999999999
Q ss_pred HHH---cCHHHHHHHHHhcccCCChhHHHHhhcCCCCccCH-HHHHHHHHHHHHHHHHHHHH----hhcCchHHHHHHHh
Q 043119 245 FFL---CSEELMASLHETLKYVKDIPHILKKFNSPSFIYTA-SDWTAFLKSICSLLHVNKIF----EVGISESLREQLRL 316 (792)
Q Consensus 245 ~l~---~~~~l~~~l~~~Lk~i~Dieril~ri~~~~~~~~~-~d~~~l~~~i~~l~~l~~~l----~~~~~~~l~~~l~~ 316 (792)
++. +|...++.++..|.+.||+.|-+.|+..+. |++ +.+..+++.+..+..-.+.+ +....+.-.. .
T Consensus 522 eitshssnS~vf~si~~~l~rlpDl~rgL~rIy~~t--Ctp~~eff~vlk~iy~a~s~fq~~~~~~~~~~~s~~~s---~ 596 (1070)
T KOG0218|consen 522 EITSHSSNSIVFESINQMLNRLPDLLRGLNRIYYGT--CTPRKEFFFVLKQIYSAVSHFQMHQSYLEHFKSSDGRS---G 596 (1070)
T ss_pred HHHhcccchHHHHHHHHHHHhCcHhHhhHHHHhccc--CCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccc---h
Confidence 993 234588999999999999999999999864 677 66666665555443222211 1111100000 1
Q ss_pred hchhHHHHHHHhhh-----HhHHHHHHHHHhhhccCcccccccCcccccCc-ChhHHHHHH---HHHhhHHHHHHHHHHH
Q 043119 317 LNFDIVEKAASCIT-----TELAYVYELVIGIIDVNRSKEKGYGTLVREGF-CDELDELRQ---IYEELPEFLEEVASLE 387 (792)
Q Consensus 317 ~~~~l~~~~~~~i~-----~~l~~i~~~i~~~Id~~~~~~~~~~~~Ik~g~-~~eLD~lr~---~~~~l~~~L~~~~~~~ 387 (792)
...+++......+. ..+..+. .+++.++.........+++-. .+.+|+-+. ..++......++ ...
T Consensus 597 ~qS~LLrrlisel~~p~~~s~~~hfL----~mln~~aa~~gnk~d~fkd~snfpl~~e~~di~~virE~~ms~~~~-~~h 671 (1070)
T KOG0218|consen 597 KQSPLLRRLISELNEPLSTSQLPHFL----TMLNVSAAMEGNKDDQFKDFSNFPLYDESEDIIKVIRESEMSRSQL-KEH 671 (1070)
T ss_pred hccHHHHHHHHHhcCccccccHHHHH----HHhhHHHHhhCChHHhhhhhccCcchhhhhhHHHHHHHHHHHHHHH-HHH
Confidence 12233444333331 1222222 223322211111001111100 122232222 122221110000 011
Q ss_pred HhhCcccccccccCeEEEE--cccceEEEEeccccchhhhhhcCCceEEEEeecCCeeEEEEeChhhHHHHHHHHHHHHH
Q 043119 388 LVQLPHLCKEMFVPCIVYI--HQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHK 465 (792)
Q Consensus 388 ~~~l~~~~~~~~~~~i~~~--~~~Gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 465 (792)
++++.+.++ .+.+.|. ....|+|+++. ....++|+.+... .+.....+|+||+++++-.++....+.
T Consensus 672 LaeiRk~Lk---~pnlef~~vsgv~flIEvkn-----s~~kkiP~dWiKv---nsTk~vsRfhtP~iq~~l~eL~~~~e~ 740 (1070)
T KOG0218|consen 672 LAEIRKYLK---RPNLEFRQVSGVDFLIEVKN-----SQIKKIPDDWIKV---NSTKMVSRFHTPRIQKLLQELEYYKEL 740 (1070)
T ss_pred HHHHHHHhc---CCCceeEEecCeeEEEEecc-----cccccCCccceee---ccceeeeecCCHHHHHHHHHHHHHHHH
Confidence 222222222 2445565 44558888753 2345667432333 333456789999999999888876666
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCceecCC-CcEEEecccceeee-cccCceec
Q 043119 466 ILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLE-PLLDIQNGRHVLQE-MTVDTFIP 543 (792)
Q Consensus 466 i~~~~~~i~~~l~~~~~~~~~~l~~~~~~i~~lD~~~s~a~~a~~~~~~~P~~~~~-~~l~i~~~~hp~~~-~~~~~~v~ 543 (792)
+.-......++..+++.+|+..|+++...+|.+||+.|+|..++..+||||+|+++ ..|.|++||||++| ...+.|||
T Consensus 741 L~i~sea~~~sFL~kiSehYtelrkat~~LatlDCi~SlA~~s~n~nYvRPtfvd~~~eI~ikngRhPvIe~Ll~d~fVP 820 (1070)
T KOG0218|consen 741 LIIESEAQYKSFLNKISEHYTELRKATLNLATLDCILSLAATSCNVNYVRPTFVDGQQEIIIKNGRHPVIESLLVDYFVP 820 (1070)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCcccccchhhhhhhcCCCchHHHHhhhccCC
Confidence 65555667788889999999999999999999999999999999999999999986 67999999999999 45678999
Q ss_pred cceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeeccc--------ccchhhccchhHHHHHHH
Q 043119 544 NDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQV 614 (792)
Q Consensus 544 n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~--------~~~~~~~~s~f~~e~~~~ 614 (792)
||+.++.+ +++.+||||||||||.|+||+|++.||||+|+||||+.+.++++| ++++..|.|||+.||..+
T Consensus 821 Ndi~ls~egerc~IITGPNMGGKSsyIrQvALitIMAQiGsfVPAeea~l~IfdgvltRmGAsDnI~~grSTFm~Emldt 900 (1070)
T KOG0218|consen 821 NDIMLSPEGERCNIITGPNMGGKSSYIRQVALITIMAQIGSFVPAEEARLSIFDGVLTRMGASDNIINGRSTFMVEMLDT 900 (1070)
T ss_pred CcceecCCCceEEEEeCCCCCCchHHHHHHHHHHHHHHhcCccchHHhhhhHHhhHHHhhccccccccchhHHHHHHHHH
Confidence 99999998 999999999999999999999999999999999999999999999 567888999999999999
Q ss_pred HHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhcCCCCCCCceeEEEEEEee-cc
Q 043119 615 GMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLR-PE 693 (792)
Q Consensus 615 ~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~~~~~~~~~v~~~~~~~~~-~~ 693 (792)
+.|++.++++||||+||+||||++.||.||++|+++|+.+.. .|.++|+|||+.+.+... ...+.|.+|||.+.. ++
T Consensus 901 ~eil~kat~~SlvilDElGRGTsThDGiAIsYAtL~yf~~~~-k~l~LFvTHfP~l~eie~-~f~gqv~nyHmgyl~sed 978 (1070)
T KOG0218|consen 901 LEILKKATKRSLVILDELGRGTSTHDGIAISYATLKYFSELS-KCLILFVTHFPMLGEIES-GFPGQVRNYHMGYLESED 978 (1070)
T ss_pred HHHHHhcccchhhhhHhhcCCCccccchhHHHHHHHHHHHhh-ceeEEeeecCcchhhhhc-CCCccccceeeeeeeecc
Confidence 999999999999999999999999999999999999999864 679999999999987531 234689999999886 33
Q ss_pred CCCCCCCceEEeEEeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Q 043119 694 NNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNN 745 (792)
Q Consensus 694 ~~~~~~~~~~~~y~l~~G~~~~s~gi~~A~~~g~p~~ii~~A~~~~~~~~~~ 745 (792)
....|.+.++|+|||++|.|.+|||++||++|++|.+||.||-.+.+++++.
T Consensus 979 k~~~d~dsVtfLYklvrGlasrSyGlnVAklA~ip~sii~rA~siSeeleke 1030 (1070)
T KOG0218|consen 979 KTGEDWDSVTFLYKLVRGLASRSYGLNVAKLARIPKSIINRAFSISEELEKE 1030 (1070)
T ss_pred ccCCCchhhhhHHHHhhhhhhccccccHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 3444678899999999999999999999999999999999999999988763
No 6
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=4.4e-83 Score=717.48 Aligned_cols=705 Identities=24% Similarity=0.351 Sum_probs=505.9
Q ss_pred CeEEEEEEEcccccEEEEEEeCCCCCCccHHHHHhhcCCceEEeCC-CCChhHHHHHhhhcCCCCCCceeeeccC-CCCC
Q 043119 12 HRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTS-TKSEESFLSALKRSDGTTEAPTVKLVKS-SIFS 89 (792)
Q Consensus 12 ~~iGiA~~D~stg~l~i~e~~d~~~~~~~~~~~~~~q~~P~iIi~~-~~~~~~~~~~l~~~~~~~~~~~v~~~~~-~~F~ 89 (792)
..+|+|++|++||+++++||.||. ..+.++.++.|+.|..++.. +........+++-... .......+|. .+|+
T Consensus 390 ~s~gvc~iDtstge~~~~eF~DDr--~~s~L~tlLs~~rp~E~I~e~~~ls~~t~~~ik~~~~--~~~~~n~~~~~eFwd 465 (1125)
T KOG0217|consen 390 VSFGVCFIDTSTGEINIGEFCDDR--HCSKLDTLLSQVRPVELIEERKNLSDPTKVIIKLKLS--SNLVENLVPKSEFWD 465 (1125)
T ss_pred eeeeEEEEEcccceEEEEEeecch--hhhHHHHHHHcccHHHHHHHhhccCCceeeeeeeeec--chhhhcccChhhhcc
Confidence 369999999999999999999985 33556667788888544322 2211111112221110 0112223343 4566
Q ss_pred HHHHHHHHH---hhhcccCCCCCchhhHHhhhhccccCCchHHHHHHHHHHHHHhhcccchhhhhhccCCccccccceEE
Q 043119 90 YEQAWHRLI---YLRVTGMDDGLSIKERICYLNSMMDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSVIE 166 (792)
Q Consensus 90 ~~~~~~~l~---~l~~~~~~~~~~~~~~~~~l~s~~~~~~~~~i~Algall~yl~~~~~~~~l~~~~~~~~~~~i~~~~~ 166 (792)
-++..+.+. ++...++ .+....+.+.- -+..+++.|+|++++||+..++++.+.++. ++... .+..
T Consensus 466 sek~~~eii~~dy~~~~g~------e~~~sil~~p~-~~~~la~safg~~~~Ylk~~~id~~llsm~--n~~ey-~~~~- 534 (1125)
T KOG0217|consen 466 SEKTGREIISEDYFESLGL------EDSPSILKSPN-TDKELALSAFGGLFYYLKKLLIDEELLSMK--NFEEY-DSLD- 534 (1125)
T ss_pred hhhHHHHHhhhhhhhcccc------cCchhhccCCC-ccchhhHHHHHHHHHHHHHHhhHHHHhhhh--hhhhc-chhc-
Confidence 666555342 2221011 11111222211 135789999999999999999887776653 22111 1111
Q ss_pred EccCCcEEecHHHHHhccCccCCCCCCCCCCCCcCccccHhhhccccCCchhhHHHHHHhhccCCChHHHHHHHHHHHHH
Q 043119 167 VSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFF 246 (792)
Q Consensus 167 ~~~~~~m~iD~~Tl~~LeI~~~~~~~s~~~~g~~k~~~SLf~lLN~t~T~~G~RLLr~wL~~Pl~d~~~I~~R~daVe~l 246 (792)
...|.+|.+|++|||||.|..+++ .+| +||.++|+|.||+|+|||++|+++|++|.+.|++||++|+.|
T Consensus 535 ---~s~mvlD~~tL~NleIf~Ns~~G~-------~~g-tL~~~~~~csTpfGKRllk~Wl~~Pl~~~~~I~~R~dav~~l 603 (1125)
T KOG0217|consen 535 ---QSEMVLDGATLENLEIFSNSRNGG-------DEG-TLFYAVNRCSTPFGKRLLKTWLMAPLCDKEDIKQRQDAVDSL 603 (1125)
T ss_pred ---ccceeecchhhhhhhhhccCCCCC-------Cch-hHHHHHhhccChHHHHHHHHHhhCcCCCHHHHHHHHHHHHHH
Confidence 334999999999999999987632 233 999999999999999999999999999999999999999999
Q ss_pred HcCHHHHHHHHHhcccCCChhHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHH-hhchhHHHHH
Q 043119 247 LCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLR-LLNFDIVEKA 325 (792)
Q Consensus 247 ~~~~~l~~~l~~~Lk~i~Dieril~ri~~~~~~~~~~d~~~l~~~i~~l~~l~~~l~~~~~~~l~~~l~-~~~~~l~~~~ 325 (792)
..++..+..+.+.|+++||+||++.|+..+... ..+++..++..+..+-.+.+.+... ...+. .....++..+
T Consensus 604 ~~~~~~~~~~~e~l~klPDlERlL~Rih~~~~~-~~k~i~~f~rvLegfk~~~~~~~~~-----~~v~~~~~~~~~is~~ 677 (1125)
T KOG0217|consen 604 GKAPMDRTKVGETLKKLPDLERLLVRIHNGGEK-NKKKIADFIRVLEGFKEINKLLGSL-----INVLKEGEGLRLISEL 677 (1125)
T ss_pred hcCchhHHHHHHHHhhCCcHHHHHHHHHhcCcc-chhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhHHHHHHHHH
Confidence 999999999999999999999999999886422 2333433343333333333333211 11111 0011122222
Q ss_pred HHh---hhHhHHHHHHHHHhhhccCcccccccCcccccCcChhHHHHHHHHHhhHHHHHHHHHHHHhhCcccccccccCe
Q 043119 326 ASC---ITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPC 402 (792)
Q Consensus 326 ~~~---i~~~l~~i~~~i~~~Id~~~~~~~~~~~~Ik~g~~~eLD~lr~~~~~l~~~L~~~~~~~~~~l~~~~~~~~~~~ 402 (792)
... +...+..+ ....+.......+ ......|+++++|+.-...+++...|.++......++. + .+
T Consensus 678 ~~~~p~~~~~i~~~----~~af~r~~a~~eg-~i~P~~Gfd~eyD~a~k~~~e~e~~L~~~L~~~rk~l~----c---~s 745 (1125)
T KOG0217|consen 678 LESMPNLSEEIENW----TEAFDRVKAVKEG-VIVPLEGFDEEYDEAMKRVDEAENELLAYLEEYRKRLG----C---SS 745 (1125)
T ss_pred hcCcchhhHHHHHH----HHHHHHHHHhhcC-ccCCCccccHHHHHHhhHHHHHHHHHHHHHHHHHHhcC----C---Cc
Confidence 222 22223222 2334433222222 34567899999999887777777666666554443332 2 35
Q ss_pred EEEEcc--cceEEEEeccccchhhhhhcCCceEEEEeecCCeeEEEEeChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043119 403 IVYIHQ--IGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSH 480 (792)
Q Consensus 403 i~~~~~--~Gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~i~~~l~~~ 480 (792)
|+|+.. .-|++++|.+--.... -+|+. +++.....+|.++..+.+-..+.++..........+.+.++.+
T Consensus 746 i~~~~vGk~~y~lEvP~n~~~~s~----~~~~~----~S~~Kg~~RY~tp~~~kli~~l~~aee~~~~~~~d~~~r~~~~ 817 (1125)
T KOG0217|consen 746 IVFVDVGKDVYQLEVPENGGVPSS----LRYEL----MSAKKGVSRYYTPDLRKLIAHLDEAEERKKSSLSDLKRRLIVR 817 (1125)
T ss_pred eeEeecCceEEEEecCcccCCCCc----hHHHH----HHhhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777653 3488988754111000 12221 1222223467899999999999988888888888899999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhC--CCCCceecCC----CcEEEecccceeeecc--cCceeccceeecCC-
Q 043119 481 ICLFSDHLLKAVNFAAELDCFLSLALVAHQN--NYMRPILTLE----PLLDIQNGRHVLQEMT--VDTFIPNDTRIDND- 551 (792)
Q Consensus 481 ~~~~~~~l~~~~~~i~~lD~~~s~a~~a~~~--~~~~P~~~~~----~~l~i~~~~hp~~~~~--~~~~v~n~~~~~~~- 551 (792)
+.++...|++++.+++.|||++|+|.+|... ++|||++.+. ..+.++.++||++... .+.|+||++.++..
T Consensus 818 f~~~~~~w~~tv~~~a~iD~l~sla~~s~~~~~~~Crp~i~~~~dt~~~l~~~~~~Hpcfsl~s~~~~fipN~v~~g~~~ 897 (1125)
T KOG0217|consen 818 FDEHYIIWQATVKALASIDCLLSLAETSKGLGGPMCRPEIVESTDTPGFLIVKGLRHPCFSLPSTGTSFIPNDVELGGAE 897 (1125)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccceeecccCCCceeEEecccCceeecCcCCCccccchhhccccc
Confidence 9999999999999999999999999999875 5999999642 3689999999998754 35799999999955
Q ss_pred -CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeeccc--------ccchhhccchhHHHHHHHHHHHHhCC
Q 043119 552 -GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQAT 622 (792)
Q Consensus 552 -~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~--------~~~~~~~~s~f~~e~~~~~~~l~~~~ 622 (792)
.++.++|||||+||||+||++|++++|||+||+|||+.+.++++| .+.+..+.|||+.|+.+.+.||..+|
T Consensus 898 e~~~~llTGpNmgGKSTllRq~c~~vilaq~G~~VPa~~~~~tpidrI~tRlGA~D~im~g~STF~vELsET~~IL~~aT 977 (1125)
T KOG0217|consen 898 ENREGLLTGPNMGGKSTLLRQACIAVILAQIGCDVPAEVMELTPIDRIFTRLGANDDIMSGESTFFVELSETKKILKHAT 977 (1125)
T ss_pred cceeeeeccCCcCCchHHHHHHHHHHHHHHhCCCccHHHhcccchHHHhhhcccccchhcCCceEEEeccchHHHHhhcC
Confidence 677779999999999999999999999999999999999999988 45677889999999999999999999
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhcCCCCCCCceeEEEEEEeeccCCCCCCCce
Q 043119 623 SQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDI 702 (792)
Q Consensus 623 ~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 702 (792)
++|||++||+||||++.||.+||.+++++|++. .+|..+|+|||+.++.. +..+|+|+..||....+.. ..+
T Consensus 978 ~~SLvi~DELGRGtst~DG~aIA~aVLe~l~~~-i~c~~fFSTHYhsl~~~--~~~~p~Vrl~~Ma~~vd~e-----~~v 1049 (1125)
T KOG0217|consen 978 RHSLVIVDELGRGTSTFDGTAIAEAVLEHLSEG-IQCLGFFSTHYHSLCVD--FMHHPQVRLLHMACVVDEE-----IDV 1049 (1125)
T ss_pred ccceeeehhhcCcccccCCcchHHHHHHHHHhc-ccccCCccccccchhHh--hhcCccccchhheeeecCC-----ccE
Confidence 999999999999999999999999999999985 47899999999999864 4567889999999775431 369
Q ss_pred EEeEEeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcChhhhhhhhhcchHHHHHHHHHHHHHHhCCCCchHHHH
Q 043119 703 VFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERWSHENISAQDQQYKNAVEKMLAFDVLKGDLRL 782 (792)
Q Consensus 703 ~~~y~l~~G~~~~s~gi~~A~~~g~p~~ii~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 782 (792)
+|+||+.+|+|++|||+++|++||+|..||++|...+.+++...- . ..+...+++...-++.++...++-.
T Consensus 1050 tFLYkl~~G~cpkSyG~~vArmaglp~~vi~~a~~~a~E~e~~~~---~------~~d~~~r~~~~~~~~s~~s~~~l~s 1120 (1125)
T KOG0217|consen 1050 TFLYKLEEGICPKSYGFNVARMAGLPDQVIDRAEIKAHELEKSSA---N------AADGKIREVVECALDSSLSISELHS 1120 (1125)
T ss_pred EEeehhccCCCCcchhHHHHHhcCCcHHHHHHHHHHHHHHHHHHH---h------hhhHHHHhhhhhhhccccCHHHHHH
Confidence 999999999999999999999999999999999999998876432 1 1122344555555555666556555
Q ss_pred HHH
Q 043119 783 FFQ 785 (792)
Q Consensus 783 ~~~ 785 (792)
.++
T Consensus 1121 il~ 1123 (1125)
T KOG0217|consen 1121 ILD 1123 (1125)
T ss_pred HHh
Confidence 443
No 7
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=6.7e-82 Score=694.39 Aligned_cols=668 Identities=25% Similarity=0.371 Sum_probs=525.1
Q ss_pred CCeEEEEEEEcccccEEEEEEeCCCCCCccHHHHHhhcCCce-EEeCCCCChh--H-HHHHhhhcCCCCCCceeeeccCC
Q 043119 11 GHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQ-IIYTSTKSEE--S-FLSALKRSDGTTEAPTVKLVKSS 86 (792)
Q Consensus 11 ~~~iGiA~~D~stg~l~i~e~~d~~~~~~~~~~~~~~q~~P~-iIi~~~~~~~--~-~~~~l~~~~~~~~~~~v~~~~~~ 86 (792)
+..+|+|++|.+..+++++++.|++ .++..+....|..|. .|+..+.... + ....+. ..+ ..++.+..+
T Consensus 150 ~~~vgv~~~d~~~~k~~~~ef~Dn~--~~snle~~l~~lg~kEcll~~~~~~~~~~kl~~~~~-r~g----~~~t~~~~~ 222 (902)
T KOG0219|consen 150 QRRVGVAFVDTINVKIGLSEFVDDD--SFSNLEALLIQLGPKECVLPEGSVAGEMKKLRNIID-RCG----VLITLRKKS 222 (902)
T ss_pred CceeEEEEechhheeeehhhhcCcH--HHHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHh-ccC----eEEEEeccc
Confidence 4689999999999999999999884 557777788888885 4444222122 1 222222 222 255666666
Q ss_pred CCCHHHHHHHHHhhhcccCCCCCchhhHHhhhhccccCCchHHHHHHHHHHHHHhhcccchhhhhhccCCccccccceEE
Q 043119 87 IFSYEQAWHRLIYLRVTGMDDGLSIKERICYLNSMMDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSVIE 166 (792)
Q Consensus 87 ~F~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~s~~~~~~~~~i~Algall~yl~~~~~~~~l~~~~~~~~~~~i~~~~~ 166 (792)
.|+...-...+.-+-- +.......+ .+...++..++.+++.|+.-. . ++++.. -..+..
T Consensus 223 e~~~kdv~~~l~~~l~-~~~~~~~~~----------e~~~q~a~~~~~~~i~yl~~~-------~-e~~~s~--~~ei~~ 281 (902)
T KOG0219|consen 223 ESSWKDVEQDLNRLLK-SQEHAAYLP----------ELELQLAMSALSALIKYLDLE-------N-EYSNSG--KYELTN 281 (902)
T ss_pred chhHHHHHHHHHhccc-chhhhccch----------HHHhHHHHHHHHHHHHHHhhc-------c-cccccc--eEEEee
Confidence 7754443333321000 000011111 123567889999999999421 1 112221 234677
Q ss_pred EccCCcEEecHHHHHhccCccCCC-CCCCCCCCCcCccccHhh-hccccCCchhhHHHHHHhhccCCChHHHHHHHHHHH
Q 043119 167 VSLNKFLKLDATAHEALQIFQTDK-HPSHMGIGRAKEGFSVFG-MMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAIS 244 (792)
Q Consensus 167 ~~~~~~m~iD~~Tl~~LeI~~~~~-~~s~~~~g~~k~~~SLf~-lLN~t~T~~G~RLLr~wL~~Pl~d~~~I~~R~daVe 244 (792)
+.+..+|.+|..|.++|++|+.+. ++. ...+|.. +||||+|++|.|+|++|+.+|++|++.|++|+|.|+
T Consensus 282 ~~~~~~m~ld~~av~alnlf~~~~~~~~--------~s~~L~~~~LN~c~t~~G~rll~~w~~qpL~~~~ri~~r~d~v~ 353 (902)
T KOG0219|consen 282 HGLHQFMRLDSAAVRALNLFPLPYNNPE--------KSNNLALSLLNHCKTLQGERLLRQWLKQPLRDIDRINERHDLVE 353 (902)
T ss_pred cchHHHhhHHHHHHHHHhhcCCCCCCcc--------ccchhhHHHHhhcccccchhhhhhhhhcchHHHHHHHHHhhhHH
Confidence 888999999999999999997542 221 1237777 999999999999999999999999999999999999
Q ss_pred HHHcCHHHHHHHHH-hcccCCChhHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhhchhHHH
Q 043119 245 FFLCSEELMASLHE-TLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVE 323 (792)
Q Consensus 245 ~l~~~~~l~~~l~~-~Lk~i~Dieril~ri~~~~~~~~~~d~~~l~~~i~~l~~l~~~l~~~~~~~l~~~l~~~~~~l~~ 323 (792)
.++.+.+.++.+++ .|..+||+.|+..++.. ++..|..++++....++.+.+.+.....+ ... ++.
T Consensus 354 ~l~~~~~~rq~L~~~lL~~~pdi~rl~~~l~~----~~L~d~~r~yq~~~~l~~~~~~l~~~~~~-~~~--------ll~ 420 (902)
T KOG0219|consen 354 ALVEDAEIRQKLRDDLLRRIPDISRLARRLMK----ANLQDVNRIYQAAKLLPTVVQVLISLSES-HNR--------LLK 420 (902)
T ss_pred HHHhhhHHHHHHHHHHhhcChhHHHhhhhhhh----cchHHHHHHHHHHHHhHHHHHHHHhhhhh-hhh--------hhh
Confidence 99999999988875 68899999999999872 67889999999998888887776442221 111 111
Q ss_pred HHHHhhhHhHHHHHHHHHhhhccCcccccccCcccccCcChhHHHHHHHHHhhHHHHHHHHHHHHhhCcccccccccCeE
Q 043119 324 KAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCI 403 (792)
Q Consensus 324 ~~~~~i~~~l~~i~~~i~~~Id~~~~~~~~~~~~Ik~g~~~eLD~lr~~~~~l~~~L~~~~~~~~~~l~~~~~~~~~~~i 403 (792)
......-..+..+..++.+++|++...+. .+.||+.||++|.++|+..++++..+.+...+.-.+++.. ..+.+++
T Consensus 421 ~~l~~~~~~~~kf~~~ve~t~D~da~ee~--ey~VR~eFdeeL~eLrq~LdeL~~~m~~~hkrv~~dl~~D--~~kklkL 496 (902)
T KOG0219|consen 421 SPLTEHLKKLEKFQEMVETTVDLDAEEEN--EYRVRVDFDEELQELREKLDELERKMEKLHKKVSADLGLD--PKKQLKL 496 (902)
T ss_pred hhhhhhhhhHHHHHHHHHHHhhHhHHhcC--cEEEecccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--cccceee
Confidence 11111223566778888999998877663 5689999999999999999999988877665554454432 2233456
Q ss_pred EEEcccceEEEEeccccchhhhhhcCCceEEEEeecCCeeEEEEeChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043119 404 VYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICL 483 (792)
Q Consensus 404 ~~~~~~Gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~i~~~l~~~~~~ 483 (792)
.-.+..||++++... .+....+-.+| .-.++.++ .++|+|.++..|++++.+.+.+....+..+.+++++....
T Consensus 497 e~~~~~G~~~RlTr~--e~~~LR~~k~y--~eLstqK~--GV~FTtk~L~slN~e~~~~qk~Y~~~Q~~ivrevikia~t 570 (902)
T KOG0219|consen 497 ENSAQFGWYFRVTRK--EEKVLRKKKNY--TELSTQKG--GVKFTTKKLSSLNDEFMSLQKEYDEAQNEIVREIIKIAAT 570 (902)
T ss_pred eccchhheeeeeeeh--hhhHhhccCCc--eEEEEeeC--cEEEEhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 667789999998653 23333333344 22233333 5899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh--hCCCCCceecCCC--cEEEecccceeeeccc-CceeccceeecCC-CcEEEE
Q 043119 484 FSDHLLKAVNFAAELDCFLSLALVAH--QNNYMRPILTLEP--LLDIQNGRHVLQEMTV-DTFIPNDTRIDND-GRINII 557 (792)
Q Consensus 484 ~~~~l~~~~~~i~~lD~~~s~a~~a~--~~~~~~P~~~~~~--~l~i~~~~hp~~~~~~-~~~v~n~~~~~~~-~~~~~l 557 (792)
|.+.|..+.+.+|.|||+.|||.+|. -.+|+||.+.+.+ .+.++++|||++|... ..|+|||+.++.. +++.+|
T Consensus 571 Y~Ppleal~~vlAhLDv~~SFa~~st~a~~pYvRP~~l~~gs~rl~l~~~rHp~lE~Qd~~~fIpNdv~le~~~~~~~Ii 650 (902)
T KOG0219|consen 571 YTPPLEALNQVLAHLDVFVSFAHAATVAPIPYVRPKLLPLGSKRLELKQSRHPVLEGQDEIPFIPNDVVLEKGKCRMLII 650 (902)
T ss_pred cCCcHHHHHHHHHHHHhheeehhhcccCCCCccCccccccchhHHHHHhcccchhhccccCCCCCCccccccCCceEEEE
Confidence 99999999999999999999999998 4589999987653 5889999999999654 3799999999977 999999
Q ss_pred EcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeeccc--------ccchhhccchhHHHHHHHHHHHHhCCCCeEEEE
Q 043119 558 TGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLL 629 (792)
Q Consensus 558 tGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~--------~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvll 629 (792)
|||||+|||||+|++|.+++|||+||||||+.+.++++| .+....+.||||+||.+.+.|++.++++|||++
T Consensus 651 TGpNMGGKSTyir~~Gvi~lmAQIGcfVPce~A~i~IvD~Il~RVGA~D~q~kG~STFM~Emleta~Ilr~at~~Sliii 730 (902)
T KOG0219|consen 651 TGPNMGGKSTYIRQVGVIVLMAQIGCFVPCESATISIVDGILTRVGAGDSQLKGISTFMAEMLETASILRRATKNSLIII 730 (902)
T ss_pred eCCCcCccchhhhhhhHHHHHHHhCCceehhhcCCchhhHHHhhhccchhhhcchHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 999999999999999999999999999999999999999 556778999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhcCCCCCCCceeEEEEEEeeccCCCCCCCceEEeEEee
Q 043119 630 DEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLV 709 (792)
Q Consensus 630 DE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~y~l~ 709 (792)
|||||||++.||..+||++-+|++.+. +|.+|||||+|+++... ...+.+++.||.+..++ ++++.+|++.
T Consensus 731 DELGRGTSt~DGfgiAwai~ehi~~ki-~cf~lfATHfhElt~la--e~~~~vKn~h~~a~i~~------~~~~llY~V~ 801 (902)
T KOG0219|consen 731 DELGRGTSTYDGFGIAWAIAEHIATKI-GCFCLFATHFHELTKLA--EQLPTVKNLHVTAQIEN------DDITLLYKVF 801 (902)
T ss_pred eccCCCceeccCccHHHHHHHHHHHHH-hHhHHHHhHHHHHHhhh--hhhhhhhhheeeeEecC------cchhhHHHHh
Confidence 999999999999999999999998863 78999999999998754 24578899999887654 6789999999
Q ss_pred cCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCh
Q 043119 710 PGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNK 746 (792)
Q Consensus 710 ~G~~~~s~gi~~A~~~g~p~~ii~~A~~~~~~~~~~~ 746 (792)
+|+|+.||||++|+++|+|+.||+.|++.++.++...
T Consensus 802 ~Gv~d~SFGi~VA~~a~fp~~vie~A~~~~~ele~~~ 838 (902)
T KOG0219|consen 802 EGVCDQSFGIHVAELVGFPEHVIEMAKQKAEELEDEL 838 (902)
T ss_pred cccccCcchhhHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887643
No 8
>KOG0220 consensus Mismatch repair ATPase MSH4 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=6.3e-75 Score=629.32 Aligned_cols=675 Identities=21% Similarity=0.306 Sum_probs=504.5
Q ss_pred CCeEEEEEEEcccccEEEEEEeCCCCCCccHHHHHhhcCCce-EEeCCCCC-hhHHHHHhhhcCCCCCCceeeeccCCCC
Q 043119 11 GHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQ-IIYTSTKS-EESFLSALKRSDGTTEAPTVKLVKSSIF 88 (792)
Q Consensus 11 ~~~iGiA~~D~stg~l~i~e~~d~~~~~~~~~~~~~~q~~P~-iIi~~~~~-~~~~~~~l~~~~~~~~~~~v~~~~~~~F 88 (792)
.++||+|..|.-+++.+++++.|+..|..-...+... .|. +++.++.. ...+.-..+.....-....++...+.+|
T Consensus 117 ~~~Ig~~~~~~~~~q~~l~~f~dst~y~~v~~~l~i~--s~~ei~i~~~~~a~~~skl~~~~~~e~~~~v~~~~~s~k~f 194 (867)
T KOG0220|consen 117 RGEIGMASIDLKNPQIILSQFADSTTYAKVITKLKIL--SPLEIIISNTACAVGNSKLLFTLITENFKNVNFTTISRKYF 194 (867)
T ss_pred cceeEEEEecCCCCceehhhhhccchhHHHHhHhhcc--ChhheeecccccccchHHHHHHHHhhcccccceeehhhhhc
Confidence 3699999999999999999999987664333333333 564 44443322 2222111221111112234555678899
Q ss_pred CHHHHHHHHHhhhcccCCCCCchhhHHhhhhccccCCchHHHHHHHHHHHHHhhcccchhhhhhccCCccccccceEEEc
Q 043119 89 SYEQAWHRLIYLRVTGMDDGLSIKERICYLNSMMDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVS 168 (792)
Q Consensus 89 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~s~~~~~~~~~i~Algall~yl~~~~~~~~l~~~~~~~~~~~i~~~~~~~ 168 (792)
+.+.+...+.++... . .-..+++.+ +..++++|+|+++.|++..+.. ... +.--.+.+..
T Consensus 195 ns~~gl~~i~~~~~~---~------~s~vle~i~--~k~~al~a~a~llky~~~~~~~--------~~~-~~slri~~~g 254 (867)
T KOG0220|consen 195 NSTKGLEYIEQLCIA---E------FSTVLEEIQ--SKTYALGAAAALLKYVEEIQSS--------VYA-PKSLRICFQG 254 (867)
T ss_pred CchhhHHHHHHHHhh---h------hHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh--------hhc-cceeEEEeec
Confidence 999998888744321 1 111233322 4688999999999999865431 111 1112367788
Q ss_pred cCCcEEecHHHHHhccCccCCCCCCCCCCCCcCccccHhhhccccCCchhhHHHHHHhhccCCChHHHHHHHHHHHHHHc
Q 043119 169 LNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLC 248 (792)
Q Consensus 169 ~~~~m~iD~~Tl~~LeI~~~~~~~s~~~~g~~k~~~SLf~lLN~t~T~~G~RLLr~wL~~Pl~d~~~I~~R~daVe~l~~ 248 (792)
..+.+.||..+.++|||+.+.. .+.+++|++++|+|.|++|.|.||..++||++|...|+.|+++++++..
T Consensus 255 s~nT~~id~~~~~~lelV~~~~---------~kn~~~l~~vl~~T~t~~g~r~lRssilqpl~d~~ti~~rleaiqeL~a 325 (867)
T KOG0220|consen 255 SENTAMIDSSSAQSLELVINNQ---------YKNNHTLFGVLNYTKTPGGYRRLRSSILQPLTDIETINMRLEAIQELLA 325 (867)
T ss_pred ccceeeeecccccceEEechhh---------hhcccceeeeeeeeecccchhhHHhhhcccccchhhhhHHHHHHHHHhc
Confidence 8999999999999999998764 3456799999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcccCCChhHHHHhhcCCCCccCHHHHHH-HHHHHHHHHHHHHHHhhcCchHHHHHHHhhchhHHHHHHH
Q 043119 249 SEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTA-FLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAAS 327 (792)
Q Consensus 249 ~~~l~~~l~~~Lk~i~Dieril~ri~~~~~~~~~~d~~~-l~~~i~~l~~l~~~l~~~~~~~l~~~l~~~~~~l~~~~~~ 327 (792)
++++...++..+|..+|++++++...... ..+|.. --..+..+..++..++. ..++...+...+..++.+...
T Consensus 326 ~~~L~~~Lr~~~k~~~dld~~~s~~~~~~----~~~~i~~~~s~I~~~~~Lk~tL~l--v~~~~~al~~~~s~~~~e~~~ 399 (867)
T KOG0220|consen 326 DEELFFGLRSVIKRFLDLDQLLSVLVQIP----TQDTVNAAESKINNLIYLKHTLEL--VDPLKIALKNCNSNLLREYYG 399 (867)
T ss_pred CchHhhhhHHHHhhhhhHHHHHHHHHhhh----hHHhhhcchhHHHHHHHHHHHHHH--HHHHHHHHhhchhHHHHHHHH
Confidence 99999999999999999999998864321 111111 11122333333322221 111222222222222222222
Q ss_pred hh-hHhHHHHHHHHHhhhccCccc-------ccccCcccccCcChhHHHHHHHHHhhHHHHHHHHHHHHhhCcccccccc
Q 043119 328 CI-TTELAYVYELVIGIIDVNRSK-------EKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMF 399 (792)
Q Consensus 328 ~i-~~~l~~i~~~i~~~Id~~~~~-------~~~~~~~Ik~g~~~eLD~lr~~~~~l~~~L~~~~~~~~~~l~~~~~~~~ 399 (792)
.+ ++.+..+.+.+.++|+.+.-. .....+.++.+.+..||..|++|.++.+...+...+.-+... .
T Consensus 400 ~~~~~r~~~i~~~i~e~I~dd~l~a~~~l~~~~qkcyAvks~i~~~LDiaR~ty~ei~~~~~~~i~~l~E~~~------~ 473 (867)
T KOG0220|consen 400 SFKDKRFGIILEKIKEVINDDALYAKGCLNLRTQKCYAVKSNINGFLDIARRTYTEIVDDIAGMISQLGEKFS------L 473 (867)
T ss_pred HhcchHHHHHHHHHHHHhhHHHHhccchhhhhccceeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------c
Confidence 11 233444455555555543211 112256799999999999999999986655443333322221 1
Q ss_pred cCeEEEEcccceEEEEeccccchhhhhhcCCceEEEEeecCCeeEEEEeChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043119 400 VPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVS 479 (792)
Q Consensus 400 ~~~i~~~~~~Gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~i~~~l~~ 479 (792)
+....|....||+++++.... ......+|+. |.......+.+.|++..+..++.++.....++.-+...++.++..
T Consensus 474 nl~~~f~sarGF~~ri~~~~~-~~~~~~lP~~---fi~~~~~~~~~~~~s~~~ik~N~Rlk~~~~E~~l~te~~v~~lld 549 (867)
T KOG0220|consen 474 NLRLSFSSARGFFIRITTDCI-ALPSDTLPSE---FIKISKVKNSYSFTSADLIKMNERLKEVLREIFLMTEMIVCKLLD 549 (867)
T ss_pred cccccccccccEEEEeecccc-ccccccCchh---hhhhhhhcceeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235678888999999875422 1223456764 334444455667888889999999999888888888999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCceecCCCcEEEecccceeeeccc-CceeccceeecCCCcEEEEE
Q 043119 480 HICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTV-DTFIPNDTRIDNDGRINIIT 558 (792)
Q Consensus 480 ~~~~~~~~l~~~~~~i~~lD~~~s~a~~a~~~~~~~P~~~~~~~l~i~~~~hp~~~~~~-~~~v~n~~~~~~~~~~~~lt 558 (792)
.+..+.+.+..+.++++-||+++|||......+|++|++++. +.|++||||++|... ++++.||+.+..+.++.+||
T Consensus 550 ~i~~~I~~L~~iae~~~~lD~l~sfa~~~~~~~y~~P~fT~s--laI~qGRHPILe~i~~ek~i~N~t~~t~~s~f~IIT 627 (867)
T KOG0220|consen 550 EIYEHISCLYKLAEAVSMLDMLCSFAHACTLSDYVRPEFTDS--LAIKQGRHPILEKISAEKPIANNTYVTEGSNFLIIT 627 (867)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCc--eeeccCCCchhhhhcccCcccCcceeecccceEEEE
Confidence 999999999999999999999999999999999999999886 899999999999754 46999999999889999999
Q ss_pred cCCCCCchhHHHHHHHHHHHhhcCccccCCceeeeccc--------ccchhhccchhHHHHHHHHHHHHhCCCCeEEEEe
Q 043119 559 GPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLD 630 (792)
Q Consensus 559 GpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~--------~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllD 630 (792)
|||||||||||||+|+++||||+||||||..+.+++++ .+.+....|+|+.||++++.|++.++.+|||+||
T Consensus 628 GPNMsGKSTYLKQvAl~~IMAQIGc~IPA~YaS~pIf~RIFtRmg~nDele~NsS~F~sEMke~A~Ilq~a~~~SLiVlD 707 (867)
T KOG0220|consen 628 GPNMSGKSTYLKQVALCQIMAQIGSYVPAEYASFRVFKRIFTRMGTNDELERNSSTFMSEMKEAAYILQNANKNSLIVLD 707 (867)
T ss_pred CCCCCcchHHHHHHHHHHHHHHhccCcchhhccchHHHHHHHHhcCchhhhhchhHHHHHHHHHHHHHHhCCcCcEEEEh
Confidence 99999999999999999999999999999999999998 3567778999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhcCCCCCCCceeEEEEEEeeccCCCCCCCceE-EeEEee
Q 043119 631 EFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIV-FLYRLV 709 (792)
Q Consensus 631 E~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~y~l~ 709 (792)
|+||||++.||.++++|+.|++.+. .++++++||+++++... ...|.|.++||.+...+ +... ..|||.
T Consensus 708 ELgR~TSteeGiaityAvCE~lL~L--kayTflATHFldIa~la--n~~paVdnlHF~~q~~e------Nssk~~k~kLs 777 (867)
T KOG0220|consen 708 ELGRGTSTEEGIAITYAVCEYLLSL--KAYTFLATHFLDIAAIA--NYYPAVDNLHFLVQTDE------NSSKNKKYKLS 777 (867)
T ss_pred hhccCCccccchhhHHHHHHHHHHh--hHhHHHHHHHHHHHHHh--hcCccccceeeeeeecc------cchhhhhhhhh
Confidence 9999999999999999999999986 57899999999999864 34678999999987543 2333 369999
Q ss_pred cCCC-CCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Q 043119 710 PGHA-LLSYGLHCALLAGVPAEVIKRAAYVLEAAQN 744 (792)
Q Consensus 710 ~G~~-~~s~gi~~A~~~g~p~~ii~~A~~~~~~~~~ 744 (792)
.|-. +.-||+++|++.-+|++|++.|+.+.-++..
T Consensus 778 rg~~~~~~yG~~~vE~s~iPd~i~e~a~~~~t~i~A 813 (867)
T KOG0220|consen 778 RGLTEEKNYGLKAAEVSSLPDSIVEDAKEITTQITA 813 (867)
T ss_pred hhhhhcccccceEEEEecCCHHHHHhhhHHHHHHHH
Confidence 9986 6899999999999999999999998776653
No 9
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=100.00 E-value=1.2e-64 Score=597.53 Aligned_cols=486 Identities=20% Similarity=0.267 Sum_probs=402.4
Q ss_pred hhccccCCchhhHHHHHHhhccCCChHHHHHHHHHHHHHHcCHHHHHHHHHhcccCCChhHHHHhhcCCCCccCHHHHHH
Q 043119 208 GMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTA 287 (792)
Q Consensus 208 ~lLN~t~T~~G~RLLr~wL~~Pl~d~~~I~~R~daVe~l~~~~~l~~~l~~~Lk~i~Dieril~ri~~~~~~~~~~d~~~ 287 (792)
.+-++|.|++|+|+|++ ++|+.|+++|+.||+.|+++.. .+.......|+.++|+++++.++..+ +...+.++..
T Consensus 17 ~l~~~~~t~~Gk~~l~~--l~P~~~~~~i~~~l~~~~e~~~--~~~~~~~~~l~~~~Di~~~l~r~~~g-~~l~~~eL~~ 91 (782)
T PRK00409 17 QLKTFAASELGKEKVLQ--LDPETDFEEVEELLEETDEAAK--LLRLKGLPPFEGVKDIDDALKRAEKG-GVLSGDELLE 91 (782)
T ss_pred HHHhHcCCHHHHHHHHc--CCCCCCHHHHHHHHHHHHHHHH--HHHhcCCCCCCCCccHHHHHHHHhCC-CCCCHHHHHH
Confidence 34578999999999999 6999999999999999999973 33445556799999999999999875 3568889988
Q ss_pred HHHHHHHHHHHHHHHhhcCchHHHHHHHhhchhHHHHHHHhhhHhHHHHHHHHHhhhccCcccccccCcccccCcChhHH
Q 043119 288 FLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELD 367 (792)
Q Consensus 288 l~~~i~~l~~l~~~l~~~~~~~l~~~l~~~~~~l~~~~~~~i~~~l~~i~~~i~~~Id~~~~~~~~~~~~Ik~g~~~eLD 367 (792)
+.+.+..+..+++.+....... ....+......+ ..+..+.+.|..+||.+ ..|+++++++|+
T Consensus 92 i~~~l~~~~~l~~~l~~~~~~~--------~~~~L~~~~~~l-~~~~~l~~~i~~~id~~--------g~i~d~aS~eL~ 154 (782)
T PRK00409 92 IAKTLRYFRQLKRFIEDLEEEE--------ELPILEEWVAKI-RTLPELEQEIHNCIDEE--------GEVKDSASEKLR 154 (782)
T ss_pred HHHHHHHHHHHHHHHHhccccc--------chhHHHHHHHcC-cCcHHHHHHHHHHhCCC--------CEECCCCCHHHH
Confidence 8888888877777764310000 001112222222 23455666677778743 248999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhCc--ccccccccCeEEEEcccceEEEEeccccchhhhhhcCCceEEEEeecCCeeEE
Q 043119 368 ELRQIYEELPEFLEEVASLELVQLP--HLCKEMFVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRL 445 (792)
Q Consensus 368 ~lr~~~~~l~~~L~~~~~~~~~~l~--~~~~~~~~~~i~~~~~~Gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (792)
++|+.+.++...+.+...+.+.... ..+. -.+......+|++.++. .....+|++ +...+.++.++
T Consensus 155 ~iR~~~~~~~~~i~~~l~~~~~~~~~~~~L~----d~~it~r~~r~~i~vk~-----~~~~~~~g~---v~~~s~sg~t~ 222 (782)
T PRK00409 155 GIRRQLRRKKSRIREKLESIIRSKSLQKYLQ----DTIITIRNDRYVLPVKA-----EYKHAIKGI---VHDQSSSGATL 222 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccc----cceEEEECCEEEEEech-----hhhccCCCc---eeeEECCCCEE
Confidence 9999999998888877665554322 2222 13455666789888753 334456765 34455667788
Q ss_pred EEeChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCceecCCCcEE
Q 043119 446 FYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLD 525 (792)
Q Consensus 446 ~~~~~~~~~l~~~~~~~~~~i~~~~~~i~~~l~~~~~~~~~~l~~~~~~i~~lD~~~s~a~~a~~~~~~~P~~~~~~~l~ 525 (792)
|+++..+.++++++.++..++.+.+.+|+++|...+.++.+.|..+.+.+++||+++|+|.+|..++||+|.|+++..+.
T Consensus 223 y~ep~~~~~ln~~l~~l~~~~~~~~~~il~~l~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~~~~i~ 302 (782)
T PRK00409 223 YIEPQSVVELNNEIRELRNKEEQEIERILKELSAKVAKNLDFLKFLNKIFDELDFIFARARYAKALKATFPLFNDEGKID 302 (782)
T ss_pred EEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccceEcCCCcEE
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred EecccceeeecccCceeccceeecCCCcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCc-eeeeccc--------
Q 043119 526 IQNGRHVLQEMTVDTFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADA-ATVGLTD-------- 596 (792)
Q Consensus 526 i~~~~hp~~~~~~~~~v~n~~~~~~~~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~-~~~~~~~-------- 596 (792)
++++|||+++. +++||||+.++.++++++||||||||||||||++|++++|||+|+||||.. +.++++|
T Consensus 303 l~~~rHPll~~--~~~Vpndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~ 380 (782)
T PRK00409 303 LRQARHPLLDG--EKVVPKDISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGD 380 (782)
T ss_pred EcCcCCceecc--CceECceeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCC
Confidence 99999999863 679999999998789999999999999999999999999999999999996 6888887
Q ss_pred ccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhcCCC
Q 043119 597 SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCL 676 (792)
Q Consensus 597 ~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~~~~ 676 (792)
.+++..+.|+|+.+|++++.++..+++++|||+||||+||||.+|.+++.++++++.+. ++++|++||++++....
T Consensus 381 ~~si~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~--~~~vIitTH~~el~~~~-- 456 (782)
T PRK00409 381 EQSIEQSLSTFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKR--GAKIIATTHYKELKALM-- 456 (782)
T ss_pred ccchhhchhHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHC--CCEEEEECChHHHHHHH--
Confidence 45677889999999999999999999999999999999999999999999999999875 67999999999998642
Q ss_pred CCCCceeEEEEEEeeccCCCCCCCceEEeEEeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Q 043119 677 PKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEA 741 (792)
Q Consensus 677 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~~A~~~g~p~~ii~~A~~~~~~ 741 (792)
...+.+.+.+|.+. .+.+.|+|++.+|++++|||+++|+++|+|++||+||++++..
T Consensus 457 ~~~~~v~~~~~~~d--------~~~l~~~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~ 513 (782)
T PRK00409 457 YNREGVENASVEFD--------EETLRPTYRLLIGIPGKSNAFEIAKRLGLPENIIEEAKKLIGE 513 (782)
T ss_pred hcCCCeEEEEEEEe--------cCcCcEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHhh
Confidence 34556777777652 1578999999999999999999999999999999999998764
No 10
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=100.00 E-value=3.9e-59 Score=549.15 Aligned_cols=481 Identities=20% Similarity=0.258 Sum_probs=395.0
Q ss_pred hhccccCCchhhHHHHHHhhccCCChHHHHHHHHHHHHHHcCHHHHHHHHHhcccCCChhHHHHhhcCCCCccCHHH-HH
Q 043119 208 GMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASD-WT 286 (792)
Q Consensus 208 ~lLN~t~T~~G~RLLr~wL~~Pl~d~~~I~~R~daVe~l~~~~~l~~~l~~~Lk~i~Dieril~ri~~~~~~~~~~d-~~ 286 (792)
.+.++|.|++|++++++ +.|++++++|+.|++.++++..... .-.|..++|+++++.++..+. ..++.+ +.
T Consensus 17 ~l~~~~~t~~gk~~~~~--l~P~~~~~~i~~~l~~~~e~~~~~~-----~~~l~~~~di~~~l~r~~~g~-~l~~~e~l~ 88 (771)
T TIGR01069 17 NLLKQTFTPLGKEDAIG--LKPPKSVEESKEIIIKLTALGSIEN-----NVRFFGFEDIRELLKRAELGG-IVKGLEYIL 88 (771)
T ss_pred HHHHHcCCHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHhhc-----cCCcCCCccHHHHHHHHhcCC-cCChHHHHH
Confidence 45689999999999999 8999999999999999999976432 457899999999999998753 456655 88
Q ss_pred HHHHHHHHHHHHHHHHhhc-CchHHHHHHHhhchhHHHHHHHhhhHhHHHHHHHHHhhhccCcccccccCcccccCcChh
Q 043119 287 AFLKSICSLLHVNKIFEVG-ISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDE 365 (792)
Q Consensus 287 ~l~~~i~~l~~l~~~l~~~-~~~~l~~~l~~~~~~l~~~~~~~i~~~l~~i~~~i~~~Id~~~~~~~~~~~~Ik~g~~~e 365 (792)
.+...+.....+++.+... ..+.+. .....+ ..+..+...|..+||.+ ..|+++.+++
T Consensus 89 ~i~~~l~~~~~l~~~l~~~~~~~~L~------------~~~~~l-~~~~~l~~~i~~~id~~--------g~i~d~aS~~ 147 (771)
T TIGR01069 89 VIQNALKTVKHLKVLSEHVLDLEILF------------HLRLNL-ITLPPLENDIIACIDDD--------GKVKDGASEE 147 (771)
T ss_pred HHHHHHHHHHHHHHHHhccccchHHH------------HHHhcC-CCcHHHHHHHHHHhCCC--------CEECCCcCHH
Confidence 8888777777777666431 011111 111112 13445556677778743 2478999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhCc--ccccccccCeEEEEcccceEEEEeccccchhhhhhcCCceEEEEeecCCee
Q 043119 366 LDELRQIYEELPEFLEEVASLELVQLP--HLCKEMFVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETK 443 (792)
Q Consensus 366 LD~lr~~~~~l~~~L~~~~~~~~~~l~--~~~~~~~~~~i~~~~~~Gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (792)
|+++|+..+.+...+++.....+.+.. ..+.+ .++.....+|++.++. .....+|++ +++.+.++.
T Consensus 148 L~~ir~~~~~~~~~i~~~l~~~~~~~~~~~~l~~----~~it~r~~r~vipvk~-----~~~~~i~g~---v~~~S~sg~ 215 (771)
T TIGR01069 148 LDAIRESLKALEEEVVKRLHKIIRSKELAKYLSD----TIVTIRNGRYVLPLKS-----GFKGKIKGI---VHDTSSSGE 215 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcC----ceEEEECCEEEEEeeH-----HHhhcCCCe---EEEEeCCCC
Confidence 999999999988888776655443321 12211 2334445678887753 344566764 455566777
Q ss_pred EEEEeChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCceecCCCc
Q 043119 444 RLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPL 523 (792)
Q Consensus 444 ~~~~~~~~~~~l~~~~~~~~~~i~~~~~~i~~~l~~~~~~~~~~l~~~~~~i~~lD~~~s~a~~a~~~~~~~P~~~~~~~ 523 (792)
++|+++..+.+|++++.++..++.+.+.+|+.+|...+.++.+.|..+.+.+++||+++|+|.+|...+||+|.+.+.+.
T Consensus 216 t~~~ep~~~~~ln~~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~~~~ 295 (771)
T TIGR01069 216 TFYIEPQAIVKLNNKLAQLKNEEECEIEKILRTLSEKVQEYLLELKFLFKEFDFLDSLQARARYAKAVKGEFPMPSFTGK 295 (771)
T ss_pred EEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCeeceecCCCC
Confidence 88888888999999999999999999999999999999999999999999999999999999999999999999988778
Q ss_pred EEEecccceeeecccCceeccceeecCCCcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCc-eeeeccc------
Q 043119 524 LDIQNGRHVLQEMTVDTFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADA-ATVGLTD------ 596 (792)
Q Consensus 524 l~i~~~~hp~~~~~~~~~v~n~~~~~~~~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~-~~~~~~~------ 596 (792)
+.++++|||+++ ...+||||+.++.+.++++||||||||||||||+++++++|+|+|++||+.. +.++++|
T Consensus 296 i~l~~~rhPll~--~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~~i 373 (771)
T TIGR01069 296 IILENARHPLLK--EPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFADI 373 (771)
T ss_pred EEEccccCceec--CCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhheeeec
Confidence 999999999985 2469999999987668999999999999999999999999999999999987 5677776
Q ss_pred --ccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhcC
Q 043119 597 --SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEG 674 (792)
Q Consensus 597 --~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~~ 674 (792)
.+++..+.|+|+.||.+++.++..+++++|||+||||+||||.+|.++++++++++.++ ++++|++||++++....
T Consensus 374 ~~~~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~--g~~viitTH~~eL~~~~ 451 (771)
T TIGR01069 374 GDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQ--NAQVLITTHYKELKALM 451 (771)
T ss_pred ChHhHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhc--CCEEEEECChHHHHHHh
Confidence 34566789999999999999999999999999999999999999999999999999875 68999999999997643
Q ss_pred CCCCCCceeEEEEEEeeccCCCCCCCceEEeEEeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Q 043119 675 CLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQ 743 (792)
Q Consensus 675 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~~A~~~g~p~~ii~~A~~~~~~~~ 743 (792)
...+++.+.+|.+. .+.+.|+|+|.+|+++.|||++||+++|+|++||+||++++....
T Consensus 452 --~~~~~v~~~~~~~d--------~~~l~p~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~~~ 510 (771)
T TIGR01069 452 --YNNEGVENASVLFD--------EETLSPTYKLLKGIPGESYAFEIAQRYGIPHFIIEQAKTFYGEFK 510 (771)
T ss_pred --cCCCCeEEeEEEEc--------CCCCceEEEECCCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHhhH
Confidence 34567888888753 257899999999999999999999999999999999999987644
No 11
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=100.00 E-value=1e-52 Score=431.10 Aligned_cols=223 Identities=38% Similarity=0.646 Sum_probs=188.3
Q ss_pred CCCceecCCCcEEEecccceeeecc--cCceeccceeecCCC-cEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCc
Q 043119 513 YMRPILTLEPLLDIQNGRHVLQEMT--VDTFIPNDTRIDNDG-RINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADA 589 (792)
Q Consensus 513 ~~~P~~~~~~~l~i~~~~hp~~~~~--~~~~v~n~~~~~~~~-~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~ 589 (792)
||||+|.++..+.++++|||+++.. .+++||||+.++.+. ++++||||||||||||||+||++++|||+|+||||++
T Consensus 1 y~~P~~~~~~~l~i~~~~HPll~~~~~~~~~v~ndi~~~~~~~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~ 80 (235)
T PF00488_consen 1 YCRPKISEEKSLKIKEGRHPLLEEKLENKKFVPNDIELSNNKSRIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAES 80 (235)
T ss_dssp EB-EEEESTTEEEEEEE--TTHHHHTTTSSC--EEEEESSSSSSEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSE
T ss_pred CcccEEcCCCCEEEEeccCCEEeccccCCceecceeecCCCceeEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecc
Confidence 8999999988999999999999876 578999999999884 8999999999999999999999999999999999999
Q ss_pred eeeeccc--------ccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEE
Q 043119 590 ATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKV 661 (792)
Q Consensus 590 ~~~~~~~--------~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~ 661 (792)
+.++++| .+++..+.|+|+.||.+++.++..++++||||+||+|+||++.||.+++++++++|.++ .++.+
T Consensus 81 ~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~-~~~~~ 159 (235)
T PF00488_consen 81 AEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEK-SGCFV 159 (235)
T ss_dssp EEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHT-TT-EE
T ss_pred cccccccEEEeecccccccccccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHh-ccccE
Confidence 9999998 45677889999999999999999999999999999999999999999999999999984 26799
Q ss_pred EEEccChhhhhcCCCCCCCceeEEEEEEeeccCCCCCCCceEEeEEeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Q 043119 662 LVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEA 741 (792)
Q Consensus 662 l~~TH~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~~A~~~g~p~~ii~~A~~~~~~ 741 (792)
|++||++++++.. ...+.+.++||.+...+ +.+.|+||+.+|+++.|||+++|+++|+|++||+||++++++
T Consensus 160 i~~TH~~~l~~~~--~~~~~v~~~~~~~~~~~------~~~~f~Ykl~~G~~~~S~ai~iA~~~g~p~~II~rA~~i~~~ 231 (235)
T PF00488_consen 160 IIATHFHELAELL--ERNPNVQNYHMEVEEDN------DSLTFTYKLKEGICSSSYAIEIAKLAGLPEEIIERAKEILKQ 231 (235)
T ss_dssp EEEES-GGGGGHH--HHSTTEEEEEEEEEEET------TEEEEEEEEEES--SSTCHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred EEEeccchhHHHh--hhCccccccceeeeeec------cccceeEEEeECCCCCcHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 9999999998742 23467899999987433 789999999999999999999999999999999999999999
Q ss_pred Hhc
Q 043119 742 AQN 744 (792)
Q Consensus 742 ~~~ 744 (792)
+++
T Consensus 232 l~~ 234 (235)
T PF00488_consen 232 LEE 234 (235)
T ss_dssp HHT
T ss_pred Hhc
Confidence 875
No 12
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.9e-46 Score=379.06 Aligned_cols=207 Identities=35% Similarity=0.601 Sum_probs=186.5
Q ss_pred Eecccceeeecc-cCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeeccc-------
Q 043119 526 IQNGRHVLQEMT-VDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD------- 596 (792)
Q Consensus 526 i~~~~hp~~~~~-~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~------- 596 (792)
++++|||+++.. .+++||||++++.. +++++||||||+|||||+|+++++++|||+|+||||++++++++|
T Consensus 2 ~~~~rHPll~~~~~~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~ 81 (218)
T cd03286 2 FEELRHPCLNASTASSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIG 81 (218)
T ss_pred cccccCCEEecccCCCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecC
Confidence 689999999843 35799999999987 899999999999999999999999999999999999999999988
Q ss_pred -ccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhcCC
Q 043119 597 -SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGC 675 (792)
Q Consensus 597 -~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~~~ 675 (792)
.+++..+.|+|+.||++++.|++.+++++||||||||+||+|.||.+++++++++|.+. .+++++++||+++++..
T Consensus 82 ~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~-~~~~~i~~TH~~el~~~-- 158 (218)
T cd03286 82 ARDDIMKGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKK-VKCLTLFSTHYHSLCDE-- 158 (218)
T ss_pred cccccccCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHh-cCCcEEEEeccHHHHHH--
Confidence 45677889999999999999999999999999999999999999999999999999874 36899999999999875
Q ss_pred CCCCCceeEEEEEEeeccCCCCCCCceEEeEEeecCCCCCcHHHHHHHHcCCCHHHHHHH
Q 043119 676 LPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRA 735 (792)
Q Consensus 676 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~~A~~~g~p~~ii~~A 735 (792)
+...+++.++||.+...+......++++|+||+.+|++++|||+++|+++|+|++||+||
T Consensus 159 ~~~~~~v~~~~m~~~~~~~~~~~~~~~~~~Ykl~~G~~~~s~al~~A~~~g~p~~vi~rA 218 (218)
T cd03286 159 FHEHGGVRLGHMACAVKNESDPTIRDITFLYKLVAGICPKSYGLYVALMAGIPDGVVERA 218 (218)
T ss_pred hhcCcceEEEEEEEEEeccccCCCCceEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 345578999999987644322233789999999999999999999999999999999997
No 13
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=9.8e-45 Score=367.59 Aligned_cols=210 Identities=41% Similarity=0.664 Sum_probs=186.4
Q ss_pred EEEecccceeeeccc-CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeeccc-----
Q 043119 524 LDIQNGRHVLQEMTV-DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD----- 596 (792)
Q Consensus 524 l~i~~~~hp~~~~~~-~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~----- 596 (792)
|.|+++|||+++... +.|||||++++.. +++++||||||+|||||||+++++.++||+|+||||..++++++|
T Consensus 1 ~~i~~~rHPlle~~~~~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~ 80 (222)
T cd03287 1 ILIKEGRHPMIESLLDKSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTR 80 (222)
T ss_pred CeeecccCCEEeccCCCCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEE
Confidence 478999999998644 4899999999977 899999999999999999999999999999999999999999987
Q ss_pred ---ccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 597 ---SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 597 ---~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
.+++..+.|+|+.||++++.+++.+++++|+|+||||+|||+.||.++++++++++.+. .++++|++||++++++.
T Consensus 81 ~~~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 81 MGASDSIQHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEI 159 (222)
T ss_pred ecCccccccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999986 36899999999999874
Q ss_pred CCCCCCCceeEEEEEEeeccCC--CCCCCceEEeEEeecCCCCCcHHHHHHHHcCCCHHHHHHH
Q 043119 674 GCLPKSERLKFYTMSVLRPENN--STDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRA 735 (792)
Q Consensus 674 ~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~y~l~~G~~~~s~gi~~A~~~g~p~~ii~~A 735 (792)
.. ...+.+.++||.+...+.. ..+.++++|+|||.+|+++.|||+++|+++|+|++||+||
T Consensus 160 ~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~Ykl~~G~~~~s~a~~~a~~~g~p~~vi~rA 222 (222)
T cd03287 160 LR-RFEGSIRNYHMSYLESQKDFETSDSQSITFLYKLVRGLASRSFGLNVARLAGLPKSIISRA 222 (222)
T ss_pred HH-hcccCeEEEEEEEEEeccccccccCCcEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 31 1235689999987643211 1133789999999999999999999999999999999997
No 14
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.7e-43 Score=360.69 Aligned_cols=210 Identities=35% Similarity=0.548 Sum_probs=185.8
Q ss_pred Eecccceeeec-ccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeeccc-------
Q 043119 526 IQNGRHVLQEM-TVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD------- 596 (792)
Q Consensus 526 i~~~~hp~~~~-~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~------- 596 (792)
++++|||+++. ...++||||++++.. +++++||||||||||||||+||++++|||+|+||||..+.++++|
T Consensus 2 ~~~~~hpll~~~~~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il~~~~ 81 (222)
T cd03285 2 LKEARHPCVEAQDDVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILARVG 81 (222)
T ss_pred ccccCCCEEeccCCCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeEeeec
Confidence 68999999997 556899999999985 899999999999999999999999999999999999999998877
Q ss_pred -ccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhcCC
Q 043119 597 -SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGC 675 (792)
Q Consensus 597 -~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~~~ 675 (792)
.+....+.|+|+.||.+++.+++.+++++||||||||+||++.|+.++++++++++.+. .++++|++||++++.+..
T Consensus 82 l~d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~-~~~~vlisTH~~el~~~~- 159 (222)
T cd03285 82 ASDSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQ-IKCFCLFATHFHELTALA- 159 (222)
T ss_pred cccchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhc-CCCeEEEEechHHHHHHh-
Confidence 33456789999999999999999999999999999999999999999999998998763 268999999998887631
Q ss_pred CCCCCceeEEEEEEeeccCCCCCCCceEEeEEeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 043119 676 LPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAA 742 (792)
Q Consensus 676 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~~A~~~g~p~~ii~~A~~~~~~~ 742 (792)
.....+.+++|.....+ ..+++.|+||+.+|+++.|||+++|+++|+|++||+||+++.+++
T Consensus 160 -~~~~~i~~g~~~~~~~~----~~~~~~~~Y~l~~G~~~~s~a~~~a~~~g~p~~vi~~A~~~~~~~ 221 (222)
T cd03285 160 -DEVPNVKNLHVTALTDD----ASRTLTMLYKVEKGACDQSFGIHVAELANFPKEVIEMAKQKALEL 221 (222)
T ss_pred -hcCCCeEEEEEEEEEeC----CCCcEeEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHhc
Confidence 23456778888765432 126899999999999999999999999999999999999998876
No 15
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.2e-41 Score=345.34 Aligned_cols=203 Identities=57% Similarity=0.870 Sum_probs=179.2
Q ss_pred EEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeeccc-------
Q 043119 525 DIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD------- 596 (792)
Q Consensus 525 ~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~------- 596 (792)
+++++|||+++...+.|||||+.++.+ ++.++||||||||||||||+++++++|+|+|+++||..+.++++|
T Consensus 1 ~i~~~rHPll~~~~~~~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~ 80 (213)
T cd03281 1 EIQGGRHPLLELFVDSFVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMS 80 (213)
T ss_pred CcccccCCEEeccCCceEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeC
Confidence 378999999987667899999999977 499999999999999999999999999999999999999999887
Q ss_pred -ccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEccChhhhhcC
Q 043119 597 -SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCD-VPPKVLVCTHLTELLNEG 674 (792)
Q Consensus 597 -~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~-~~~~~l~~TH~~~l~~~~ 674 (792)
.+++..+.|+|+.||++++.++..+++++|+|||||++|||+.++.++++++++++.+.+ .++++|++||++++++..
T Consensus 81 ~~~si~~~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 81 SRESVSSGQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred CccChhhccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 346677899999999999999999999999999999999999999999999999998642 246899999999998864
Q ss_pred CCCCCCceeEEEEEEeeccCCCCCCCceEEeEEeecCCCCCcHHHHHHHHcCC
Q 043119 675 CLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGV 727 (792)
Q Consensus 675 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~~A~~~g~ 727 (792)
.++..+.+.++||++..++...+..++++|+||+.+|++++|||+++|+++|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~a~~~g~ 213 (213)
T cd03281 161 LLPERLKIKFLTMEVLLNPTSTSPNEDITYLYRLVPGLADTSFAIHCAKLAGI 213 (213)
T ss_pred hhccCCceEEEEEEEEEcCCccCCCCcEEEEEEEeeCCCCCCHHHHHHHHcCC
Confidence 44456789999999875432222347899999999999999999999999996
No 16
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=100.00 E-value=2e-41 Score=344.35 Aligned_cols=206 Identities=42% Similarity=0.697 Sum_probs=184.1
Q ss_pred EEecccceeeeccc--CceeccceeecCCCcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeeccc------
Q 043119 525 DIQNGRHVLQEMTV--DTFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD------ 596 (792)
Q Consensus 525 ~i~~~~hp~~~~~~--~~~v~n~~~~~~~~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~------ 596 (792)
+|+++|||+++... ..|||||++++...++++||||||||||||||++++++++||+|+++||.++.+++++
T Consensus 1 ~i~~~~hp~~~~~~~~~~~v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~ 80 (216)
T cd03284 1 EIEGGRHPVVEQVLDNEPFVPNDTELDPERQILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRI 80 (216)
T ss_pred CcccccCCEEeeccCCCceEeeeEEecCCceEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccC
Confidence 37899999998753 6799999999988899999999999999999999999999999999999999998877
Q ss_pred --ccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhcC
Q 043119 597 --SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEG 674 (792)
Q Consensus 597 --~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~~ 674 (792)
.+++..+.|+|+.|+.+++.++..+++++|+||||||+||++.|+.++++++++++.+. .++++|++||++++.+..
T Consensus 81 ~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~ 159 (216)
T cd03284 81 GASDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELE 159 (216)
T ss_pred CchhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHh
Confidence 35667789999999999999999999999999999999999999999989999999875 257899999999887642
Q ss_pred CCCCCCceeEEEEEEeeccCCCCCCCceEEeEEeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHH
Q 043119 675 CLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVL 739 (792)
Q Consensus 675 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~~A~~~g~p~~ii~~A~~~~ 739 (792)
...+.+.++||.+.... ++++|+|++.+|+++.|||+++|+++|+|++||+||++++
T Consensus 160 --~~~~~v~~~~~~~~~~~------~~l~~~ykl~~G~~~~s~a~~~a~~~g~~~~ii~rA~~~~ 216 (216)
T cd03284 160 --GKLPRVKNFHVAVKEKG------GGVVFLHKIVEGAADKSYGIEVARLAGLPEEVIERAREIL 216 (216)
T ss_pred --hcCCCeEEEEEEEEeeC------CeEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHHHHHHhC
Confidence 23467888999865432 7899999999999999999999999999999999999863
No 17
>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.5e-39 Score=371.48 Aligned_cols=475 Identities=21% Similarity=0.263 Sum_probs=364.0
Q ss_pred hccccCCchhhHHHHHHhhccCCChHHHHHHHHHHHHHHcCHHHHHHHHHhcccCCChhHHHHhhcCCCCccCHHHHHHH
Q 043119 209 MMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAF 288 (792)
Q Consensus 209 lLN~t~T~~G~RLLr~wL~~Pl~d~~~I~~R~daVe~l~~~~~l~~~l~~~Lk~i~Dieril~ri~~~~~~~~~~d~~~l 288 (792)
+.+++.|+.|+..|+. +.|..+.+.|+..++-++++....+... .-.+.++.|+...+.++..+ +...+.++..+
T Consensus 16 ~~~~~~s~~g~~~~~~--l~p~~~~~~i~~~~~e~~~~~~~~~~~g--~~~~~~l~~i~~~l~~~e~g-~~l~~~el~~i 90 (753)
T COG1193 16 LASYAQSSLGLEELKN--LKPRTDLELIEEELSETAEALDILEDEG--LPPLGGLNDVSEALGRLEKG-GRLHVEELLEI 90 (753)
T ss_pred HHHhccCHHHHHHHHh--cCccccHHHHHHHHHHHHHHHHHHhccC--CCCchhhhhhHHHHHHHhhc-ccCCHHHHHHH
Confidence 4678999999999999 8999999999999999988865321100 01466777888888888754 34567777676
Q ss_pred HHHHHHHHHHHHHHhhcCchHHHHHHHhhchhHHHHHHHhhhHhHHHHHHHHHhhhccCcccccccCcccccCcChhHHH
Q 043119 289 LKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDE 368 (792)
Q Consensus 289 ~~~i~~l~~l~~~l~~~~~~~l~~~l~~~~~~l~~~~~~~i~~~l~~i~~~i~~~Id~~~~~~~~~~~~Ik~g~~~eLD~ 368 (792)
.+.+.....++..+..... .. ......+ ..+..+...+...+|.+ ..|++.-+.+|+.
T Consensus 91 ~~~l~~~~~lkr~~~~~e~--~~-----------~~~~~~~-~~~~~l~~~i~~~id~~--------g~i~d~as~~l~~ 148 (753)
T COG1193 91 SDFLRGFRALKRAIKKLER--IK-----------RTLALAL-IELSDLELEINIPIDDD--------GLIKDRASFELDA 148 (753)
T ss_pred HHHHHHHHHHHHHHHHhhh--HH-----------HHHHHhh-hcchHHHHHHhhhhccc--------ccccccccHHHHH
Confidence 6666655555544432110 00 0000001 23444444454555532 2467788999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhC-cccccccccCeEEEEcccceEEEEeccccchhhhhhcCCceEEEEeecCCeeEEEE
Q 043119 369 LRQIYEELPEFLEEVASLELVQL-PHLCKEMFVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFY 447 (792)
Q Consensus 369 lr~~~~~l~~~L~~~~~~~~~~l-~~~~~~~~~~~i~~~~~~Gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (792)
+|.....+...+.+..+.....- ...+.. .++-.....|++.+. ......+++. .++.+.++.++|.
T Consensus 149 ir~~lr~~~~~i~~~l~~~~~~~~~~~L~e----~~v~~r~~r~vlpvk-----~~fk~~i~gi---v~d~sssg~tl~i 216 (753)
T COG1193 149 IRRQLRDLEEEIRDKLESLIRSKEAKYLQD----RIVTTRDGREVLPVK-----AEFKGAIKGI---VHDTSSSGATLYI 216 (753)
T ss_pred HHhhhHHHHHHHHHHHHHHHhhhhhHhhhh----ceEeccCCeEEeHHH-----HHhhhhcCce---EeecccccCeeee
Confidence 98877655544444333332221 111111 233344455666542 3344555553 4566777778999
Q ss_pred eChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCceecCCCcEEEe
Q 043119 448 HTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQ 527 (792)
Q Consensus 448 ~~~~~~~l~~~~~~~~~~i~~~~~~i~~~l~~~~~~~~~~l~~~~~~i~~lD~~~s~a~~a~~~~~~~P~~~~~~~l~i~ 527 (792)
.+.....+++.+..+..+-...+..+++++...+.++.+.+..+...++++|++.+-+.++....+++|.++++..+.+.
T Consensus 217 eP~~vv~l~n~~~~l~~eE~~e~e~il~~lsa~v~~~~~~l~~~~~~~~~lD~i~Ak~~~~~~~~~v~P~~~~~~~l~l~ 296 (753)
T COG1193 217 EPRSVVKLNNELRALLVEEDEEEERILRELSALVAPVIPELEILLEIIGELDFIEAKVRYAKALKGVKPDFSNDGVLELL 296 (753)
T ss_pred cchHHHhhccHhhhhhccchHhHHHHHHHHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHHHHhhccCCCccCCCceEEec
Confidence 99999999999998888877888899999999999999999999999999999999999999999999999988899999
Q ss_pred cccceeeecccCceeccceeecCCCcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCce-eeeccc--------cc
Q 043119 528 NGRHVLQEMTVDTFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAA-TVGLTD--------SK 598 (792)
Q Consensus 528 ~~~hp~~~~~~~~~v~n~~~~~~~~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~-~~~~~~--------~~ 598 (792)
+++||++.. .||+++.++.+-+..+|||||++|||+.||++|+..+|+|.|.++||... ++++++ .+
T Consensus 297 ~~~HPll~~----~v~~~i~~~~e~~~l~ITGpN~GGKtvtLKTlgl~~lm~q~gl~i~a~~gsei~~F~~i~aDIGDeQ 372 (753)
T COG1193 297 DARHPLLKE----DVPNDLELGEELDRLIITGPNTGGKTVTLKTLGLLRLMAQSGLPIPALEGSELPVFVKIFADIGDEQ 372 (753)
T ss_pred cccCccCcc----ccccccccccccceeeEecCCCCcceehHHHHHHHHHHHHcCCCeeccCCCcchhHHHhhhccCcHH
Confidence 999999852 29999999988789999999999999999999999999999999999988 666655 45
Q ss_pred chhhccchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhcCCCCC
Q 043119 599 HMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPK 678 (792)
Q Consensus 599 ~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~~~~~~ 678 (792)
++...+|||+.+|..++.++..++ +|+++||+|+||||.+|.+++.++++++.++ ++.++.+||+.++-... ..
T Consensus 373 sIeqsLSTFSshm~~i~~il~~~d--sLvl~DElg~GTdp~EgaaLai~ile~l~~~--~~~~~~tTH~~elk~~~--~~ 446 (753)
T COG1193 373 SIEQSLSTFSSHMTNIVEILEKAD--SLVLFDELGSGTDPDEGAALAIAILEDLLEK--PAKIVATTHYRELKALA--AE 446 (753)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhcc--hhHHHHHhhcCCCcchhHHHHHHHHHHHHhc--ccceehHhhHHHHHHHH--hc
Confidence 678889999999999999995555 9999999999999999999999999999997 67899999999986532 23
Q ss_pred CCceeEEEEEEeeccCCCCCCCceEEeEEeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHH
Q 043119 679 SERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLE 740 (792)
Q Consensus 679 ~~~v~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~~A~~~g~p~~ii~~A~~~~~ 740 (792)
.+.+.+-.|.. +.+.+.++|++..|++++|||+++|..+|+|..++++|+....
T Consensus 447 ~~~v~nas~~f--------d~etL~ptY~l~~G~~g~S~Af~ia~rlGl~~~iie~a~~~~g 500 (753)
T COG1193 447 REGVENASMEF--------DAETLRPTYRLLEGVPGRSNAFDIALRLGLPEPIIEEAKTEFG 500 (753)
T ss_pred chhhhchhhhh--------hHHHhhHHHHHhcCCcccchHHHHHHHcCCCHHHHHHHHHhcC
Confidence 44555555543 2367899999999999999999999999999999999998663
No 18
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=4e-40 Score=330.86 Aligned_cols=192 Identities=30% Similarity=0.520 Sum_probs=174.6
Q ss_pred EecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeeccc--------
Q 043119 526 IQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD-------- 596 (792)
Q Consensus 526 i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~-------- 596 (792)
|+++|||+++...+++||||++++.. +++++|||||||||||++|+++++++|||+|+||||..+.++++|
T Consensus 2 i~~~~hpll~~~~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~ 81 (204)
T cd03282 2 IRDSRHPILDRDKKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSN 81 (204)
T ss_pred cccccCCeEeccCCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCC
Confidence 68999999998778999999999988 799999999999999999999999999999999999999998887
Q ss_pred ccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhcCCC
Q 043119 597 SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCL 676 (792)
Q Consensus 597 ~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~~~~ 676 (792)
.++...+.|+|+.||++++.+++.+++++|+|+|||++|||+.+|.++++++++++.+. ++++|++||++++++. +
T Consensus 82 ~d~~~~~~S~fs~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~--~~~~i~~TH~~~l~~~--~ 157 (204)
T cd03282 82 DDSMERNLSTFASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKK--ESTVFFATHFRDIAAI--L 157 (204)
T ss_pred ccccchhhhHHHHHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc--CCEEEEECChHHHHHH--h
Confidence 34567789999999999999999999999999999999999999999999999999886 6899999999999874 4
Q ss_pred CCCCceeEEEEEEeeccCCCCCCCceEEeEEeecCCCC-CcHHHHHHHHcC
Q 043119 677 PKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHAL-LSYGLHCALLAG 726 (792)
Q Consensus 677 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~-~s~gi~~A~~~g 726 (792)
...+++.++||++.... .+++.|+||+++|++. .||||++||...
T Consensus 158 ~~~~~v~~~~~~~~~~~-----~~~~~~~ykl~~G~~~~~~~g~~~a~~~~ 203 (204)
T cd03282 158 GNKSCVVHLHMKAQSIN-----SNGIEMAYKLVLGLYRIVDDGIRFVRVLA 203 (204)
T ss_pred hcCCCeEEEEEEEEEcC-----CCceeeEEEEeeCCCCCCccHHHHHHHhh
Confidence 55678999999876532 1678999999999999 999999999764
No 19
>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=9.5e-37 Score=329.93 Aligned_cols=306 Identities=30% Similarity=0.440 Sum_probs=241.5
Q ss_pred ccHhhhccccCCchhhHHHHHHhhccCCChHHHHHHHHHHHHHHcCHHHHHHHHHhcccCCChhHHHHhhcCCCCccCHH
Q 043119 204 FSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTAS 283 (792)
Q Consensus 204 ~SLf~lLN~t~T~~G~RLLr~wL~~Pl~d~~~I~~R~daVe~l~~~~~l~~~l~~~Lk~i~Dieril~ri~~~~~~~~~~ 283 (792)
+|||++||+|+|++|+|+||+|+++|++|.++|++||++|++|.+++.++..++..|++++|++|++.++..+ ..++.
T Consensus 2 ~sL~~~l~~~~T~~G~r~L~~wl~~Pl~~~~~I~~R~~~v~~~~~~~~l~~~l~~~L~~~~Di~~~l~~~~~~--~~~~~ 79 (308)
T smart00533 2 GSLFELLNHTKTPMGKRLLRRWLLQPLLDLKEINERLDAVEELVENPELRQKLRQLLKRIPDLERLLSRIERG--RASPR 79 (308)
T ss_pred CCHHHHHccCCCcHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhChHHHHHHHHHHccCCcHHHHHHHHHcC--CCCHH
Confidence 4999999999999999999999999999999999999999999999889999999999999999999999875 36899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhhchhHHHHHHHhhhHhHHHHHHHHHhhhccCcccccccCcccccCcC
Q 043119 284 DWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFC 363 (792)
Q Consensus 284 d~~~l~~~i~~l~~l~~~l~~~~~~~l~~~l~~~~~~l~~~~~~~i~~~l~~i~~~i~~~Id~~~~~~~~~~~~Ik~g~~ 363 (792)
+|..++.++..+..+.+.+...........+..+ .+.....+..+.+. ..+.+..... ..+.|++|++
T Consensus 80 el~~l~~~l~~~~~l~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~---~~~~~~~~~~-~~~~i~~~~s 147 (308)
T smart00533 80 DLLRLYDSLEGLKEIRQLLESLDGPLLGLLLKVI--------LEPLLELLELLLEL---LNDDDPLEVN-DGGLIKDGFD 147 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhh--------ccchHHHHHHHHHH---hccCCccccc-CCCeeCCCCC
Confidence 9999999998888888877543211111111110 00011112222111 1122221111 1356899999
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHhhCcccccccccCeEEEEcccceEEEEeccccchhhhhhcCCceEEEEeecCCee
Q 043119 364 DELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETK 443 (792)
Q Consensus 364 ~eLD~lr~~~~~l~~~L~~~~~~~~~~l~~~~~~~~~~~i~~~~~~Gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (792)
++||++|+.+.++.+.+++.......+... ...++.|.+..||++.++.. ....+|+. +...++++.
T Consensus 148 ~~Ld~lr~~~~~l~~~l~~~~~~~~~~~~~-----~~l~~~~~~~~g~~i~v~~~-----~~~~~~~~---~~~~s~s~~ 214 (308)
T smart00533 148 PELDELREKLEELEEELEELLKKEREELGI-----DSLKLGYNKVHGYYIEVTKS-----EAKKVPKD---FIRRSSLKN 214 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CceEEeEeccEEEEEEecch-----hhccCChH---HHHHhhhcc
Confidence 999999999999998888877665544321 13467788999999998753 22345542 233345567
Q ss_pred EEEEeChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCceecCCCc
Q 043119 444 RLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPL 523 (792)
Q Consensus 444 ~~~~~~~~~~~l~~~~~~~~~~i~~~~~~i~~~l~~~~~~~~~~l~~~~~~i~~lD~~~s~a~~a~~~~~~~P~~~~~~~ 523 (792)
.+||+|+++.+|++++.++..++.+.+..+++++.+.+.++.+.|..+++++++|||++|+|.+|..++||||+|++++.
T Consensus 215 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~l~~~~~~i~~lD~l~s~a~~a~~~~~~~P~i~~~~~ 294 (308)
T smart00533 215 TERFTTPELKELENELLEAKEEIERLEKEILRELLEKVLEYLEELRALAEALAELDVLLSLATLAAEGNYVRPEFVDSGE 294 (308)
T ss_pred cceeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCCeeCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred EEEecccceeeec
Q 043119 524 LDIQNGRHVLQEM 536 (792)
Q Consensus 524 l~i~~~~hp~~~~ 536 (792)
+.+++||||+++.
T Consensus 295 l~i~~~rHPlle~ 307 (308)
T smart00533 295 LEIKNGRHPVLEL 307 (308)
T ss_pred EEEeeCCCCcccC
Confidence 9999999999863
No 20
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=2.7e-37 Score=307.55 Aligned_cols=176 Identities=41% Similarity=0.677 Sum_probs=158.8
Q ss_pred EEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeeccc--------ccchhhccchhHHHHHHHHHHHHhCCCCe
Q 043119 554 INIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQS 625 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~--------~~~~~~~~s~f~~e~~~~~~~l~~~~~~s 625 (792)
+++||||||||||||||+++++++|||+|+||||+.+.++++| .+....+.|+|+.||++++.++..+++++
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~ 80 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENS 80 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCe
Confidence 4789999999999999999999999999999999999999998 34567789999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhcCCCCCCCceeEEEEEEeeccCCCCCCCceEEe
Q 043119 626 LCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFL 705 (792)
Q Consensus 626 lvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 705 (792)
|+|+|||++|||+.++.++++++++++.++ .++++|++||++++... ....++|.++||.+..++ +++.|+
T Consensus 81 llllDEp~~g~d~~~~~~~~~~~l~~l~~~-~~~~iii~TH~~~l~~~--~~~~~~v~~~~~~~~~~~------~~~~~~ 151 (185)
T smart00534 81 LVLLDELGRGTSTYDGVAIAAAVLEYLLEK-IGALTLFATHYHELTKL--ADEHPGVRNLHMSADEET------ENLTFL 151 (185)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHhc-CCCeEEEEecHHHHHHH--hhcCccceEEEEEEEEec------CceeEE
Confidence 999999999999999999999999998763 25789999999998764 234568999999876532 679999
Q ss_pred EEeecCCCCCcHHHHHHHHcCCCHHHHHHHHHH
Q 043119 706 YRLVPGHALLSYGLHCALLAGVPAEVIKRAAYV 738 (792)
Q Consensus 706 y~l~~G~~~~s~gi~~A~~~g~p~~ii~~A~~~ 738 (792)
|++.+|+++.|||+++|+.+|+|++|++||+++
T Consensus 152 Y~l~~G~~~~s~a~~~a~~~g~~~~i~~~a~~~ 184 (185)
T smart00534 152 YKLTPGVAGKSYGIEVAKLAGLPKEVIERAKEI 184 (185)
T ss_pred EEEeECCCCCcHHHHHHHHhCCCHHHHHHHHHh
Confidence 999999999999999999999999999999986
No 21
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=100.00 E-value=2.1e-36 Score=303.61 Aligned_cols=188 Identities=23% Similarity=0.319 Sum_probs=167.7
Q ss_pred EecccceeeecccCceeccceeecCCCcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeeccc--------c
Q 043119 526 IQNGRHVLQEMTVDTFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD--------S 597 (792)
Q Consensus 526 i~~~~hp~~~~~~~~~v~n~~~~~~~~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~--------~ 597 (792)
++++|||+++ .+++|+||++++. +++++||||||||||||||+|++.++++|.|++|||..+.+. .+ .
T Consensus 2 ~~~~~hp~~~--~~~~v~n~i~l~~-g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q-~~~l~~~~~~~ 77 (199)
T cd03283 2 AKNLGHPLIG--REKRVANDIDMEK-KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELP-PVKIFTSIRVS 77 (199)
T ss_pred CcccCCCeec--CCCeecceEEEcC-CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcc-cceEEEeccch
Confidence 6899999998 4689999999998 599999999999999999999999999999999999887766 34 3
Q ss_pred cchhhccchhHHHHHHHHHHHHhCC--CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhcCC
Q 043119 598 KHMTAEQSSFMIDLHQVGMMLRQAT--SQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGC 675 (792)
Q Consensus 598 ~~~~~~~s~f~~e~~~~~~~l~~~~--~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~~~ 675 (792)
+++..+.|+|..|+.++..+++.++ +++++|+|||++|||+.++..+..++++.+.+. ++++|++||+++++..
T Consensus 78 d~l~~~~s~~~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~--~~tiiivTH~~~~~~~-- 153 (199)
T cd03283 78 DDLRDGISYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNK--NTIGIISTHDLELADL-- 153 (199)
T ss_pred hccccccChHHHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHC--CCEEEEEcCcHHHHHh--
Confidence 4566678999999999999999998 999999999999999999998877888888764 6799999999999864
Q ss_pred CCCCCceeEEEEEEeeccCCCCCCCceEEeEEeecCCCCCcHHHHHHHHcCC
Q 043119 676 LPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGV 727 (792)
Q Consensus 676 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~~A~~~g~ 727 (792)
++..+++.++||.+...+ +.++|+||+.+|+|+.|||+++|+++|+
T Consensus 154 ~~~~~~v~~~~~~~~~~~------~~~~~~y~~~~G~~~~s~~~~~a~~~g~ 199 (199)
T cd03283 154 LDLDSAVRNYHFREDIDD------NKLIFDYKLKPGVSPTRNALRLMKKIGI 199 (199)
T ss_pred hhcCCCeEEEEEEEEEEC------CeeeEEEEeCCCCCCCcHHHHHHHHcCC
Confidence 446778999999987632 7899999999999999999999999996
No 22
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=100.00 E-value=1.1e-34 Score=293.37 Aligned_cols=191 Identities=36% Similarity=0.603 Sum_probs=169.2
Q ss_pred Eecccceeeec--ccCceeccceeecCCCcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeeccc-------
Q 043119 526 IQNGRHVLQEM--TVDTFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD------- 596 (792)
Q Consensus 526 i~~~~hp~~~~--~~~~~v~n~~~~~~~~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~------- 596 (792)
++++|||+++. ..+.+||||++++. +++++||||||||||||||+|++..+++|.|+++||..+.++++|
T Consensus 2 ~~~~~~p~l~~~~~~~~~~~~~~~l~~-~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~ 80 (202)
T cd03243 2 IKGGRHPVLLALTKGETFVPNDINLGS-GRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIG 80 (202)
T ss_pred cccccCCEEeccccCCceEeeeEEEcC-CeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEec
Confidence 68999999986 45789999999996 689999999999999999999999999999999999999998877
Q ss_pred -ccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhcCC
Q 043119 597 -SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGC 675 (792)
Q Consensus 597 -~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~~~ 675 (792)
.+.+..+.|+|+.|+++++.++..+++++++|+|||++|||+.++..+.+.+++.+.+. ++++|++||+.++....
T Consensus 81 ~~d~i~~~~s~~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~--~~~vi~~tH~~~~~~~~- 157 (202)
T cd03243 81 AEDSISDGRSTFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEK--GCRTLFATHFHELADLP- 157 (202)
T ss_pred CcccccCCceeHHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhc--CCeEEEECChHHHHHHh-
Confidence 33566779999999999999999999999999999999999999999988888888765 67899999999998742
Q ss_pred CCCCCceeEEEEEEeeccCCCCCCCceEEeEEeecCCCCCcHHHHHHHHcCC
Q 043119 676 LPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGV 727 (792)
Q Consensus 676 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~~A~~~g~ 727 (792)
.....+.+++|.+..+. +++.|+||+.+|.+++|||+++|+..|+
T Consensus 158 -~~~~~l~~~~~~~~~~~------~~~~~~ykl~~g~~~~~~a~~~~~~~g~ 202 (202)
T cd03243 158 -EQVPGVKNLHMEELITT------GGLTFTYKLIDGICDPSYALQIAELAGL 202 (202)
T ss_pred -hcCCCeEEEEEEEEecC------CeeeEEEEEeECCCCCcHHHHHHHHcCC
Confidence 34567788888865432 6789999999999999999999999986
No 23
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=100.00 E-value=1.2e-34 Score=292.65 Aligned_cols=191 Identities=26% Similarity=0.401 Sum_probs=161.5
Q ss_pred EEecccceeeecccCceeccceeecCCCcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCc-eeeeccc-------
Q 043119 525 DIQNGRHVLQEMTVDTFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADA-ATVGLTD------- 596 (792)
Q Consensus 525 ~i~~~~hp~~~~~~~~~v~n~~~~~~~~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~-~~~~~~~------- 596 (792)
+|+++|||+++...+++||||++++.+.++++||||||||||||||++++..+++|+|++||+.. ..++++|
T Consensus 1 ~~~~~~hp~~~~~~~~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg 80 (200)
T cd03280 1 RLREARHPLLPLQGEKVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIG 80 (200)
T ss_pred CCcccCCCEEeccCCceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecC
Confidence 37899999999766789999999987568999999999999999999999999999999999986 4566666
Q ss_pred -ccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhcCC
Q 043119 597 -SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGC 675 (792)
Q Consensus 597 -~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~~~ 675 (792)
.+.+..+.|+|+.||+++..++..+++++++|+|||++|||+.++..+...+++.+.+. ++++|++||+.++....
T Consensus 81 ~~~~l~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~--~~~vi~~tH~~~l~~~~- 157 (200)
T cd03280 81 DEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLER--GALVIATTHYGELKAYA- 157 (200)
T ss_pred chhhhhcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhc--CCEEEEECCHHHHHHHH-
Confidence 23456678999999999999999999999999999999999999999987788888765 67999999998876431
Q ss_pred CCCCCceeEEEEEEeeccCCCCCCCceEEeEEeecCCCCCcHHHHHHHHcCC
Q 043119 676 LPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGV 727 (792)
Q Consensus 676 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~~A~~~g~ 727 (792)
.....+...++... .+++.|+||+.+|++++|||+++|+.+|+
T Consensus 158 -d~~~~l~~g~l~~~--------~~~~~~~ykl~~G~~~~s~a~~~a~~~g~ 200 (200)
T cd03280 158 -YKREGVENASMEFD--------PETLKPTYRLLIGVPGRSNALEIARRLGL 200 (200)
T ss_pred -hcCCCeEEEEEEEe--------cCcccEEEEEeECCCCCcHHHHHHHHcCC
Confidence 22233444444322 15789999999999999999999999996
No 24
>PF05192 MutS_III: MutS domain III C-terminus.; InterPro: IPR007696 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the core domain (domain 3) found in proteins of the MutS family. The core domain of MutS adopts a multi-helical structure comprised of two subdomains, which are interrupted by the clamp domain. Two of the helices in the core domain comprise the levers that extend towards the DNA. This domain is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF01624 and Pfam:PF05190. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterised in [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 1FW6_A ....
Probab=99.93 E-value=3e-24 Score=217.80 Aligned_cols=116 Identities=35% Similarity=0.653 Sum_probs=95.7
Q ss_pred HHHHHhccCccCCCCCCCCCCCCcCccccHhhhccccCCchhhHHHHHHhhccCCChHHHHHHHHHHHHHHcCHHHHHHH
Q 043119 177 ATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASL 256 (792)
Q Consensus 177 ~~Tl~~LeI~~~~~~~s~~~~g~~k~~~SLf~lLN~t~T~~G~RLLr~wL~~Pl~d~~~I~~R~daVe~l~~~~~l~~~l 256 (792)
++|+++|||+++..+ ++++ +|||++||+|.|++|+|+||+||++|++|+++|+.||++|++|.+|++++..+
T Consensus 1 ~~Tl~~L~i~~~~~~-------~~~~-~sL~~~ln~t~T~~Gkr~L~~~l~~P~~d~~~I~~R~~~v~~~~~n~~~~~~~ 72 (204)
T PF05192_consen 1 ANTLKSLEIFENSRS-------GKKK-GSLFSLLNRTSTPMGKRLLRSWLLQPLTDIEEIEKRQDAVEEFLQNEELREEL 72 (204)
T ss_dssp HHHHHHTTSSSBTTT-------SSSS-TSHHHHH---SSHHHHHHHHHHHHS-BS-HHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred ChhHHhccCCCCCCC-------CCCC-CcHHHHHhcCCChHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhhhHhhhh
Confidence 589999999987652 2233 49999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCChhHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHHHH
Q 043119 257 HETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIF 302 (792)
Q Consensus 257 ~~~Lk~i~Dieril~ri~~~~~~~~~~d~~~l~~~i~~l~~l~~~l 302 (792)
+..|++++|+++++.++..++ .++.+|..+++++..+..+.+.+
T Consensus 73 ~~~l~~~~di~~~l~~l~~~~--~~~~~~~~l~~~l~~~~~i~~~~ 116 (204)
T PF05192_consen 73 RSILKKIPDIERILKRLRSGR--ASPQDLLKLYKTLRSIIEIKKLL 116 (204)
T ss_dssp HHHHTTC-SHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccchHHHHHHHHHHhh--cChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998753 46788988888887777665553
No 25
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.87 E-value=1.8e-21 Score=189.59 Aligned_cols=133 Identities=32% Similarity=0.459 Sum_probs=115.3
Q ss_pred EecccceeeecccCceeccceeecCCCcEEEEEcCCCCCchhHHHHHHHHHHHhh----------cCccccCCceeeecc
Q 043119 526 IQNGRHVLQEMTVDTFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSH----------IGSFVPADAATVGLT 595 (792)
Q Consensus 526 i~~~~hp~~~~~~~~~v~n~~~~~~~~~~~~ltGpN~~GKSt~lk~i~~~~~laq----------~g~~vpa~~~~~~~~ 595 (792)
++.++||.+ ++||++.+.. +++++|||||||||||++|+++.+..+++ .|+++|+..+.+ ++
T Consensus 2 i~~~~~~~~------~~~~~i~~~~-~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-i~ 73 (162)
T cd03227 2 IVLGRFPSY------FVPNDVTFGE-GSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAEL-IF 73 (162)
T ss_pred ceeCCCCEE------EeccEEecCC-CCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEE-eh
Confidence 567899986 7999999876 47999999999999999999999999999 999999998776 21
Q ss_pred cccchhhccchhHHHHHHHHHHHHhCC--CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 596 DSKHMTAEQSSFMIDLHQVGMMLRQAT--SQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 596 ~~~~~~~~~s~f~~e~~~~~~~l~~~~--~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
...+.|.++.++..++.++..++ +++++|+|||++|||+.++.+++..+.+++.+ ++++|++||++++...
T Consensus 74 ----~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~---~~~vii~TH~~~~~~~ 146 (162)
T cd03227 74 ----TRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK---GAQVIVITHLPELAEL 146 (162)
T ss_pred ----heeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc---CCEEEEEcCCHHHHHh
Confidence 12348888999999999998765 89999999999999999999998877777654 5789999999999763
No 26
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.67 E-value=2.6e-16 Score=167.65 Aligned_cols=132 Identities=20% Similarity=0.258 Sum_probs=96.4
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhcCccccCCceeeeccc-
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------------------SHIGSFVPADAATVGLTD- 596 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------------------aq~g~~vpa~~~~~~~~~- 596 (792)
+..+.++++|+.. |++++|+|||||||||+||+++++... .++| |+|......+-..
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig-y~~~~~~~~~~lT~ 95 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG-YVPQEPSLYPELTV 95 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE-EEccCCCCCccccH
Confidence 4678899999999 999999999999999999999876532 2233 4444332111000
Q ss_pred -------------------------------ccchhhccchhHHHHHH-HHHHHHhCCCCeEEEEeCCCCCCCHHHHHHH
Q 043119 597 -------------------------------SKHMTAEQSSFMIDLHQ-VGMMLRQATSQSLCLLDEFGKGTLTEDGIGL 644 (792)
Q Consensus 597 -------------------------------~~~~~~~~s~f~~e~~~-~~~~l~~~~~~slvllDE~~~gt~~~~~~~l 644 (792)
.+......++|+.+|++ +..+.+.+.+|+++|||||++|.||..+..+
T Consensus 96 ~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~ 175 (293)
T COG1131 96 RENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREI 175 (293)
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHH
Confidence 00001225677777755 5555566799999999999999999888888
Q ss_pred HHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 645 LGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 645 ~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
+.+++.+.+.+ +.+++++||.++.++.
T Consensus 176 -~~~l~~l~~~g-~~tvlissH~l~e~~~ 202 (293)
T COG1131 176 -WELLRELAKEG-GVTILLSTHILEEAEE 202 (293)
T ss_pred -HHHHHHHHhCC-CcEEEEeCCcHHHHHH
Confidence 56888888763 3799999999998864
No 27
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.66 E-value=2.5e-16 Score=159.93 Aligned_cols=129 Identities=21% Similarity=0.214 Sum_probs=91.9
Q ss_pred eccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh-----------------cCccccCCcee---ee--ccc--
Q 043119 542 IPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH-----------------IGSFVPADAAT---VG--LTD-- 596 (792)
Q Consensus 542 v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq-----------------~g~~vpa~~~~---~~--~~~-- 596 (792)
+..|++|+.+ |++++|+||||||||||+|++.++.-..+ .-.|||..... +| +.|
T Consensus 19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V 98 (254)
T COG1121 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVV 98 (254)
T ss_pred eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHH
Confidence 5569999988 99999999999999999999987553211 12378875411 11 111
Q ss_pred -------------------------------ccchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHH
Q 043119 597 -------------------------------SKHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGL 644 (792)
Q Consensus 597 -------------------------------~~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l 644 (792)
.+...+..+..++ |++++-.+.+.+++|.|++||||+.|.|+....++
T Consensus 99 ~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i 178 (254)
T COG1121 99 LLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEI 178 (254)
T ss_pred HccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHH
Confidence 0001112334444 44444444455899999999999999999888887
Q ss_pred HHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 645 LGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 645 ~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
..++..+.+. ++++|++|||+..+..
T Consensus 179 -~~lL~~l~~e--g~tIl~vtHDL~~v~~ 204 (254)
T COG1121 179 -YDLLKELRQE--GKTVLMVTHDLGLVMA 204 (254)
T ss_pred -HHHHHHHHHC--CCEEEEEeCCcHHhHh
Confidence 6799999886 7899999999988753
No 28
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.64 E-value=8.4e-16 Score=151.26 Aligned_cols=133 Identities=16% Similarity=0.134 Sum_probs=94.3
Q ss_pred cCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH----------------hhcCccccCCceee---eccc-
Q 043119 538 VDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL----------------SHIGSFVPADAATV---GLTD- 596 (792)
Q Consensus 538 ~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l----------------aq~g~~vpa~~~~~---~~~~- 596 (792)
.+.-+.||++|+.+ |+++++.|||||||||.+|+|..+.-. -+.-.|.|.++.-. .+.|
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dq 92 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQ 92 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHH
Confidence 46778899999998 999999999999999999999766422 11223677776432 2222
Q ss_pred ----------------------------ccchhhccchhHHHHHH-HHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHH
Q 043119 597 ----------------------------SKHMTAEQSSFMIDLHQ-VGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGG 647 (792)
Q Consensus 597 ----------------------------~~~~~~~~s~f~~e~~~-~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~ 647 (792)
........-+.+.+++| +..+...+.+|.|+||||||+|+||.....+-.+
T Consensus 93 l~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~ 172 (300)
T COG4152 93 LKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDA 172 (300)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHH
Confidence 00011112344445544 3344445689999999999999999999888654
Q ss_pred HHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 648 TINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 648 ~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
+ ..+.+. |+++||+||.++-++.
T Consensus 173 I-~~lk~~--GatIifSsH~Me~vEe 195 (300)
T COG4152 173 I-FELKEE--GATIIFSSHRMEHVEE 195 (300)
T ss_pred H-HHHHhc--CCEEEEecchHHHHHH
Confidence 4 455665 7899999999988774
No 29
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.64 E-value=1.3e-15 Score=155.71 Aligned_cols=133 Identities=21% Similarity=0.181 Sum_probs=97.1
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHH--------------------HHhhcCccccCCce---eeec
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIV--------------------FLSHIGSFVPADAA---TVGL 594 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~--------------------~laq~g~~vpa~~~---~~~~ 594 (792)
++.|.++++|+.+ |++++|+||||||||||||+++.+. -+|+.-.|||.... .+.+
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV 93 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTV 93 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEE
Confidence 5677889999998 9999999999999999999998754 24555567887642 1222
Q ss_pred cc------------------cc---------------chhhccchhH-HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHH
Q 043119 595 TD------------------SK---------------HMTAEQSSFM-IDLHQVGMMLRQATSQSLCLLDEFGKGTLTED 640 (792)
Q Consensus 595 ~~------------------~~---------------~~~~~~s~f~-~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~ 640 (792)
.| .+ ...+...+.+ +|.++...+...+++++++|||||++.+|..-
T Consensus 94 ~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~ 173 (258)
T COG1120 94 YELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAH 173 (258)
T ss_pred eehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHH
Confidence 22 00 0011122333 45555555556689999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 641 GIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 641 ~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
...+. .++..+.+. .+.++++++||++++-.
T Consensus 174 Q~evl-~ll~~l~~~-~~~tvv~vlHDlN~A~r 204 (258)
T COG1120 174 QIEVL-ELLRDLNRE-KGLTVVMVLHDLNLAAR 204 (258)
T ss_pred HHHHH-HHHHHHHHh-cCCEEEEEecCHHHHHH
Confidence 99996 578888754 26899999999999864
No 30
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.59 E-value=5.5e-15 Score=158.92 Aligned_cols=143 Identities=15% Similarity=0.189 Sum_probs=96.9
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhc
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------------------SHI 581 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------------------aq~ 581 (792)
.+.+++...-+ .+..+.++++|+.. |++++|+|||||||||++|+++++... .++
T Consensus 7 ~i~i~~l~k~~----~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRY----GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred eEEEEeEEEEE----CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 45666655444 23567899999988 999999999999999999999876421 122
Q ss_pred CccccCCceeee---ccc-----------------------------ccchhhccchhHHHHH-HHHHHHHhCCCCeEEE
Q 043119 582 GSFVPADAATVG---LTD-----------------------------SKHMTAEQSSFMIDLH-QVGMMLRQATSQSLCL 628 (792)
Q Consensus 582 g~~vpa~~~~~~---~~~-----------------------------~~~~~~~~s~f~~e~~-~~~~~l~~~~~~slvl 628 (792)
| |+|.+....+ +.+ ........++++.+|+ +++.+...+.+|+++|
T Consensus 83 g-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lll 161 (306)
T PRK13537 83 G-VVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLV 161 (306)
T ss_pred E-EEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence 2 4444322110 000 0000111345555554 4455555679999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 629 LDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 629 lDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
||||++|+||.....+ +.++..+.+. +.++|++||+++.++.
T Consensus 162 LDEPt~gLD~~~~~~l-~~~l~~l~~~--g~till~sH~l~e~~~ 203 (306)
T PRK13537 162 LDEPTTGLDPQARHLM-WERLRSLLAR--GKTILLTTHFMEEAER 203 (306)
T ss_pred EeCCCcCCCHHHHHHH-HHHHHHHHhC--CCEEEEECCCHHHHHH
Confidence 9999999999888888 5677777654 6799999999998753
No 31
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.59 E-value=5.3e-15 Score=141.69 Aligned_cols=128 Identities=16% Similarity=0.209 Sum_probs=87.8
Q ss_pred ccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCc---------eeeec-------cc---------
Q 043119 543 PNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADA---------ATVGL-------TD--------- 596 (792)
Q Consensus 543 ~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~---------~~~~~-------~~--------- 596 (792)
..|++|... |++++|.|||||||||+||+|+.+.+..+.-.++..-. -.+++ .+
T Consensus 18 vrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~ 97 (245)
T COG4555 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLK 97 (245)
T ss_pred hhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHH
Confidence 568999988 99999999999999999999998876554221111000 01111 11
Q ss_pred --------------------------ccchhhccchhHHHHHHHHHHHH-hCCCCeEEEEeCCCCCCCHHHHHHHHHHHH
Q 043119 597 --------------------------SKHMTAEQSSFMIDLHQVGMMLR-QATSQSLCLLDEFGKGTLTEDGIGLLGGTI 649 (792)
Q Consensus 597 --------------------------~~~~~~~~s~f~~e~~~~~~~l~-~~~~~slvllDE~~~gt~~~~~~~l~~~~~ 649 (792)
.+.+......|+.+|++-..|.+ ...+|+++++|||++|.|......+ ...+
T Consensus 98 ~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~-~dfi 176 (245)
T COG4555 98 YFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKF-HDFI 176 (245)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHH-HHHH
Confidence 01122223455556655444433 3689999999999999999887776 4577
Q ss_pred HHHHhCCCCcEEEEEccChhhhhc
Q 043119 650 NYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 650 ~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
.++.+. +..+||+||.++.++.
T Consensus 177 ~q~k~e--gr~viFSSH~m~Evea 198 (245)
T COG4555 177 KQLKNE--GRAVIFSSHIMQEVEA 198 (245)
T ss_pred HHhhcC--CcEEEEecccHHHHHH
Confidence 777664 5689999999988764
No 32
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.57 E-value=8.4e-15 Score=144.69 Aligned_cols=144 Identities=19% Similarity=0.192 Sum_probs=97.3
Q ss_pred CcEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH----------------------
Q 043119 522 PLLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL---------------------- 578 (792)
Q Consensus 522 ~~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l---------------------- 578 (792)
..|++++...-+ .++.|.++++|+.. |++++|+||.|+||||+||+|+++.-.
T Consensus 7 ~~I~vr~v~~~f----G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 7 PLIEVRGVTKSF----GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred ceEEEeeeeeec----CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 345666555444 56788999999999 999999999999999999999765411
Q ss_pred --hhcCccccCCce---eeeccc------------cc-------------------chhhccchhHHHHHHHHHHH-HhC
Q 043119 579 --SHIGSFVPADAA---TVGLTD------------SK-------------------HMTAEQSSFMIDLHQVGMML-RQA 621 (792)
Q Consensus 579 --aq~g~~vpa~~~---~~~~~~------------~~-------------------~~~~~~s~f~~e~~~~~~~l-~~~ 621 (792)
-.+|. +....| .+.+.+ ++ ....--|..+++|++.+.+. +.+
T Consensus 83 ir~r~Gv-lFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAia 161 (263)
T COG1127 83 IRKRMGV-LFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIA 161 (263)
T ss_pred HHhheeE-EeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHh
Confidence 11221 111111 111111 00 01112355666775544333 337
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 622 TSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 622 ~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+|+|+++|||++|.||.....+ ..++..|.+. -+.|++++|||++-+.
T Consensus 162 ldPell~~DEPtsGLDPI~a~~~-~~LI~~L~~~-lg~T~i~VTHDl~s~~ 210 (263)
T COG1127 162 LDPELLFLDEPTSGLDPISAGVI-DELIRELNDA-LGLTVIMVTHDLDSLL 210 (263)
T ss_pred cCCCEEEecCCCCCCCcchHHHH-HHHHHHHHHh-hCCEEEEEECChHHHH
Confidence 89999999999999999888777 5688888775 4789999999987654
No 33
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.57 E-value=1.5e-14 Score=157.25 Aligned_cols=143 Identities=17% Similarity=0.175 Sum_probs=96.8
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhc
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------------------SHI 581 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------------------aq~ 581 (792)
.|.+++...-+ .+..+.++++|+.+ |++++|+|||||||||+||+++++... ..+
T Consensus 41 ~i~i~nl~k~y----~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSY----GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARI 116 (340)
T ss_pred eEEEEEEEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccE
Confidence 35666655444 34568899999988 999999999999999999999876421 112
Q ss_pred CccccCCceee---eccc-----------------------------ccchhhccchhHHHHHH-HHHHHHhCCCCeEEE
Q 043119 582 GSFVPADAATV---GLTD-----------------------------SKHMTAEQSSFMIDLHQ-VGMMLRQATSQSLCL 628 (792)
Q Consensus 582 g~~vpa~~~~~---~~~~-----------------------------~~~~~~~~s~f~~e~~~-~~~~l~~~~~~slvl 628 (792)
| |+|...... .+.+ .+......++++.+|++ +..+...+.+|+++|
T Consensus 117 g-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLi 195 (340)
T PRK13536 117 G-VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLI 195 (340)
T ss_pred E-EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 2 344332110 0000 00001113455555544 444455678999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 629 LDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 629 lDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
||||++|+||.....+ +.++..+.+. +.++|++||+++.++.
T Consensus 196 LDEPt~gLD~~~r~~l-~~~l~~l~~~--g~tilisSH~l~e~~~ 237 (340)
T PRK13536 196 LDEPTTGLDPHARHLI-WERLRSLLAR--GKTILLTTHFMEEAER 237 (340)
T ss_pred EECCCCCCCHHHHHHH-HHHHHHHHhC--CCEEEEECCCHHHHHH
Confidence 9999999999988888 5577777654 6799999999998753
No 34
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.56 E-value=2e-14 Score=144.18 Aligned_cols=131 Identities=19% Similarity=0.143 Sum_probs=89.9
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhc-----Cc----------cccCCceeeeccc-------
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHI-----GS----------FVPADAATVGLTD------- 596 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~-----g~----------~vpa~~~~~~~~~------- 596 (792)
..|..|++|+.. |+++.|+||.||||||+||.||++.-.... |- +|+.+.+-+++..
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l 95 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVAL 95 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhhee
Confidence 567789999998 999999999999999999999987643221 21 2333322222111
Q ss_pred ----c-------cc-h-----hhcc--------chhHHHHHHHHHHH-HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHH
Q 043119 597 ----S-------KH-M-----TAEQ--------SSFMIDLHQVGMML-RQATSQSLCLLDEFGKGTLTEDGIGLLGGTIN 650 (792)
Q Consensus 597 ----~-------~~-~-----~~~~--------s~f~~e~~~~~~~l-~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~ 650 (792)
. +. . .-++ ...+++|+|...+. +.+.+|.++||||||..+|...+..+-..+++
T Consensus 96 ~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~ 175 (248)
T COG1116 96 GLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLR 175 (248)
T ss_pred hhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHH
Confidence 0 00 0 0012 23346676544444 34799999999999999999999999765555
Q ss_pred HHHhCCCCcEEEEEccChhhhh
Q 043119 651 YFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 651 ~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
-..+. +.|++++||+.+.+-
T Consensus 176 lw~~~--~~TvllVTHdi~EAv 195 (248)
T COG1116 176 LWEET--RKTVLLVTHDVDEAV 195 (248)
T ss_pred HHHhh--CCEEEEEeCCHHHHH
Confidence 54443 689999999998764
No 35
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.55 E-value=3e-14 Score=140.45 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=85.6
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCc------ccc----CCceeeeccccc-------chhh
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGS------FVP----ADAATVGLTDSK-------HMTA 602 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~------~vp----a~~~~~~~~~~~-------~~~~ 602 (792)
.+.++++|+.. |++++|+||||||||||+|.+++.... .-|. .+. .....++++..+ ....
T Consensus 14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 92 (173)
T cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP-DSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRE 92 (173)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHH
Confidence 46778899888 999999999999999999999876422 1121 110 001112222210 1111
Q ss_pred c--cchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 603 E--QSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 603 ~--~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
. .|. +|.++++.+...+.+|+++|+|||++|.|+.....+. .+++.+.++ +.++|++||+.+.+.
T Consensus 93 ~~~LS~--G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~--g~tiii~th~~~~~~ 159 (173)
T cd03230 93 NLKLSG--GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW-ELLRELKKE--GKTILLSSHILEEAE 159 (173)
T ss_pred HhhcCH--HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHC--CCEEEEECCCHHHHH
Confidence 1 332 3445555556668999999999999999998888885 566777664 578999999998765
No 36
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.55 E-value=5.9e-14 Score=136.86 Aligned_cols=120 Identities=16% Similarity=0.130 Sum_probs=83.2
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeeccc-------c-cchhhcc---chhH
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD-------S-KHMTAEQ---SSFM 608 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~-------~-~~~~~~~---s~f~ 608 (792)
.+.++++|+.. |++++|+||||||||||+|+++++.. .....+.+-+ . +...... ..++
T Consensus 14 ~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---------~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS 84 (163)
T cd03216 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK---------PDSGEILVDGKEVSFASPRDARRAGIAMVYQLS 84 (163)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---------CCCeEEEECCEECCcCCHHHHHhcCeEEEEecC
Confidence 46678888888 99999999999999999999875432 2222222111 0 0000011 1133
Q ss_pred -HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 609 -IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 609 -~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+|.++++.+...+.+|+++|+|||++|+|+.....+. .+++.+.+. +.++|++||+++.+.
T Consensus 85 ~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~--~~tiii~sh~~~~~~ 146 (163)
T cd03216 85 VGERQMVEIARALARNARLLILDEPTAALTPAEVERLF-KVIRRLRAQ--GVAVIFISHRLDEVF 146 (163)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHH-HHHHHHHHC--CCEEEEEeCCHHHHH
Confidence 3445555555668999999999999999998888885 566666554 579999999998654
No 37
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.54 E-value=2e-14 Score=154.58 Aligned_cols=129 Identities=16% Similarity=0.182 Sum_probs=88.2
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhcCccccCCceeee---ccc
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------------------SHIGSFVPADAATVG---LTD 596 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------------------aq~g~~vpa~~~~~~---~~~ 596 (792)
.+.++++|+.. |++++|+||||||||||+|+++++... .++| |+|......+ +.+
T Consensus 7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIG-IVPQYASVDEDLTGRE 85 (302)
T ss_pred eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcE-EecCCCCCCCCCcHHH
Confidence 46678999988 999999999999999999999866421 1122 3444321110 000
Q ss_pred -----------------------------ccchhhccchhHHHHH-HHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHH
Q 043119 597 -----------------------------SKHMTAEQSSFMIDLH-QVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLG 646 (792)
Q Consensus 597 -----------------------------~~~~~~~~s~f~~e~~-~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~ 646 (792)
........++++.+++ +++.+...+.+|+++|||||++|.||.....+ +
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l-~ 164 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAI-W 164 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH-H
Confidence 0000111344555554 45555556799999999999999999888877 4
Q ss_pred HHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 647 GTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 647 ~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
.+++.+.+. +.++|++||+++.+..
T Consensus 165 ~~l~~~~~~--g~tvi~~sH~~~~~~~ 189 (302)
T TIGR01188 165 DYIRALKEE--GVTILLTTHYMEEADK 189 (302)
T ss_pred HHHHHHHhC--CCEEEEECCCHHHHHH
Confidence 577777654 6799999999988753
No 38
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.54 E-value=4.1e-14 Score=140.21 Aligned_cols=129 Identities=17% Similarity=0.135 Sum_probs=85.3
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC------ccc---c---CC-ceeeecccc-------cc
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIG------SFV---P---AD-AATVGLTDS-------KH 599 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g------~~v---p---a~-~~~~~~~~~-------~~ 599 (792)
.+.++++|+.. |++++|+||||||||||+|+++++... .-| ..+ | .. ...++++.. ..
T Consensus 14 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (178)
T cd03229 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP-DSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLT 92 (178)
T ss_pred EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCC
Confidence 46778888887 999999999999999999999865321 122 111 0 00 011222210 01
Q ss_pred hhhccch-hH-HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 600 MTAEQSS-FM-IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 600 ~~~~~s~-f~-~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
....... ++ +|.++++.+...+.+++++|+|||++|.|+.....+. .+++.+.+.. +.++|++||+++...
T Consensus 93 ~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~-~~l~~~~~~~-~~tiii~sH~~~~~~ 165 (178)
T cd03229 93 VLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR-ALLKSLQAQL-GITVVLVTHDLDEAA 165 (178)
T ss_pred HHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhc-CCEEEEEeCCHHHHH
Confidence 1111111 33 3445566666668999999999999999998877774 5666776541 468999999998875
No 39
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.53 E-value=6e-14 Score=139.56 Aligned_cols=127 Identities=16% Similarity=0.105 Sum_probs=83.8
Q ss_pred eccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC------ccccC----C--ceeeeccccc----------
Q 043119 542 IPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIG------SFVPA----D--AATVGLTDSK---------- 598 (792)
Q Consensus 542 v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g------~~vpa----~--~~~~~~~~~~---------- 598 (792)
+.++++++.. |++++|+||||||||||+|.+++..-. ..| ..+.. . ...++++..+
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 93 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP-ASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDL 93 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCC
Confidence 7788999988 999999999999999999999876421 111 11100 0 0112211100
Q ss_pred chhhccch---hH-HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 599 HMTAEQSS---FM-IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 599 ~~~~~~s~---f~-~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
........ ++ +|.++++.+...+.+|+++|+|||++|.|+.....+. .++..+.+. +.++|++||+++.+.
T Consensus 94 t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~--~~tiii~sh~~~~~~ 168 (182)
T cd03215 94 SVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIY-RLIRELADA--GKAVLLISSELDELL 168 (182)
T ss_pred cHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHH-HHHHHHHHC--CCEEEEEeCCHHHHH
Confidence 01111110 33 3345555555668999999999999999998888875 566666654 579999999987664
No 40
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.53 E-value=5.3e-14 Score=138.08 Aligned_cols=128 Identities=19% Similarity=0.205 Sum_probs=81.8
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh--cCccccCCce-eeeccc----------cc-chhhcc
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH--IGSFVPADAA-TVGLTD----------SK-HMTAEQ 604 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq--~g~~vpa~~~-~~~~~~----------~~-~~~~~~ 604 (792)
..+.++++|+.. |++++|+||||||||||||++..- -+. ++...+.... .+..++ .. ......
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~~--~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~ 85 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYA--SGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKL 85 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhhc--CCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCc
Confidence 455679999988 999999999999999999977310 000 0111111111 111111 10 122223
Q ss_pred chhHHHH-HHHHHHHHhCCC--CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 605 SSFMIDL-HQVGMMLRQATS--QSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 605 s~f~~e~-~~~~~~l~~~~~--~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+.++.++ ++++.+...+.+ ++++|+|||++|.|+.....+.. .++.+.+. +.++|++||+++...
T Consensus 86 ~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~-~l~~~~~~--g~tvIivSH~~~~~~ 153 (176)
T cd03238 86 STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLE-VIKGLIDL--GNTVILIEHNLDVLS 153 (176)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhC--CCEEEEEeCCHHHHH
Confidence 3444443 444444445677 99999999999999988888854 55666553 679999999998764
No 41
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.53 E-value=5.5e-14 Score=140.94 Aligned_cols=131 Identities=18% Similarity=0.172 Sum_probs=89.9
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh-------------------------hcCccccCCceeee
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS-------------------------HIGSFVPADAATVG 593 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la-------------------------q~g~~vpa~~~~~~ 593 (792)
..+.++++|+.. |++++|+||.||||||||+.++++.-.. ++| ||.....-++
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iG-fvFQ~~nLl~ 96 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIG-FVFQNFNLLP 96 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEE-EECccCCCCC
Confidence 467889999998 9999999999999999999998765321 112 1111110000
Q ss_pred ccc---------------c-----------------cchh-hccchhH-HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHH
Q 043119 594 LTD---------------S-----------------KHMT-AEQSSFM-IDLHQVGMMLRQATSQSLCLLDEFGKGTLTE 639 (792)
Q Consensus 594 ~~~---------------~-----------------~~~~-~~~s~f~-~e~~~~~~~l~~~~~~slvllDE~~~gt~~~ 639 (792)
-.. . +... ...+..+ +|.+|++.+-+.+.+|+++|.|||+...|+.
T Consensus 97 ~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~ 176 (226)
T COG1136 97 DLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSK 176 (226)
T ss_pred CCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChH
Confidence 000 0 0000 1122333 3455666666668999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 640 DGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 640 ~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
.+..+. .++..+.+. .+.++|++||+.+++..
T Consensus 177 t~~~V~-~ll~~~~~~-~g~tii~VTHd~~lA~~ 208 (226)
T COG1136 177 TAKEVL-ELLRELNKE-RGKTIIMVTHDPELAKY 208 (226)
T ss_pred HHHHHH-HHHHHHHHh-cCCEEEEEcCCHHHHHh
Confidence 999995 577777654 26899999999999874
No 42
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.53 E-value=5e-14 Score=137.12 Aligned_cols=140 Identities=19% Similarity=0.215 Sum_probs=95.0
Q ss_pred cCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh----------------------hcCccccCCcee---
Q 043119 538 VDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS----------------------HIGSFVPADAAT--- 591 (792)
Q Consensus 538 ~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la----------------------q~g~~vpa~~~~--- 591 (792)
.+.-|.++++++.. |++++|+||.|||||||||++..+...- .+|+ |....--
T Consensus 13 g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGm-VFQ~fnLFPH 91 (240)
T COG1126 13 GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGM-VFQQFNLFPH 91 (240)
T ss_pred CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCe-eccccccccc
Confidence 45678899999998 9999999999999999999997554321 1221 2111100
Q ss_pred --------------------------------eeccc-ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCC
Q 043119 592 --------------------------------VGLTD-SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTL 637 (792)
Q Consensus 592 --------------------------------~~~~~-~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~ 637 (792)
+++.| .+.. -+..+++. +|++.+-+.|-+|.++|+|||++.+|
T Consensus 92 lTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~y---P~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALD 168 (240)
T COG1126 92 LTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAY---PAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALD 168 (240)
T ss_pred chHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhC---ccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCC
Confidence 11111 1111 22333333 44555555589999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhcCCCCCCCceeEEEEE
Q 043119 638 TEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMS 688 (792)
Q Consensus 638 ~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~~~~~~~~~v~~~~~~ 688 (792)
|+-...+. .+++.|++. |.|.+++||.+..+..- .++|.|++-.
T Consensus 169 PElv~EVL-~vm~~LA~e--GmTMivVTHEM~FAr~V----adrviFmd~G 212 (240)
T COG1126 169 PELVGEVL-DVMKDLAEE--GMTMIIVTHEMGFAREV----ADRVIFMDQG 212 (240)
T ss_pred HHHHHHHH-HHHHHHHHc--CCeEEEEechhHHHHHh----hheEEEeeCC
Confidence 98877775 588888886 68999999999998742 2345554443
No 43
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.52 E-value=5.6e-14 Score=138.27 Aligned_cols=125 Identities=16% Similarity=0.191 Sum_probs=83.7
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCc-cccCC----------ceeeeccccc------chhh
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGS-FVPAD----------AATVGLTDSK------HMTA 602 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~-~vpa~----------~~~~~~~~~~------~~~~ 602 (792)
.+..+++|+.. |++++|+||||||||||+|.++++.... .|. ++... ...++++..+ ....
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e 94 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT-SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRE 94 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHH
Confidence 46778888887 9999999999999999999998764321 121 11100 0112222200 1111
Q ss_pred c-cchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 603 E-QSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 603 ~-~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
. .|. +|.++++.+...+.+|+++|+|||++|+|+.....+. .++..+.+ +.++|++||+++.+.
T Consensus 95 ~lLS~--G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~---~~tii~~sh~~~~~~ 159 (171)
T cd03228 95 NILSG--GQRQRIAIARALLRDPPILILDEATSALDPETEALIL-EALRALAK---GKTVIVIAHRLSTIR 159 (171)
T ss_pred HhhCH--HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHH-HHHHHhcC---CCEEEEEecCHHHHH
Confidence 1 332 3445555555567899999999999999998887774 56666643 478999999998874
No 44
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.52 E-value=6.4e-14 Score=150.81 Aligned_cols=142 Identities=16% Similarity=0.175 Sum_probs=93.5
Q ss_pred EEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhcC
Q 043119 524 LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------------------SHIG 582 (792)
Q Consensus 524 l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------------------aq~g 582 (792)
+.+++...-+ .+..+.++++|+.. |++++|+||||||||||||+++++... .++
T Consensus 5 i~~~~l~~~~----~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i- 79 (303)
T TIGR01288 5 IDLVGVSKSY----GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAI- 79 (303)
T ss_pred EEEEeEEEEe----CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcE-
Confidence 4555554433 23457889999988 999999999999999999999876421 111
Q ss_pred ccccCCceee---eccc------------cc-----------------chhhccchhHHHH-HHHHHHHHhCCCCeEEEE
Q 043119 583 SFVPADAATV---GLTD------------SK-----------------HMTAEQSSFMIDL-HQVGMMLRQATSQSLCLL 629 (792)
Q Consensus 583 ~~vpa~~~~~---~~~~------------~~-----------------~~~~~~s~f~~e~-~~~~~~l~~~~~~slvll 629 (792)
.|+|...... .+.+ .. ......+.++.++ ++++.+...+.+|+++||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL 159 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLIL 159 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1344332111 0000 00 0011123444444 445555556799999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 630 DEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 630 DE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
|||++|.|+.....+. .++..+.+. +.++|++||+++.+..
T Consensus 160 DEPt~gLD~~~~~~l~-~~l~~~~~~--g~til~~sH~~~~~~~ 200 (303)
T TIGR01288 160 DEPTTGLDPHARHLIW-ERLRSLLAR--GKTILLTTHFMEEAER 200 (303)
T ss_pred eCCCcCCCHHHHHHHH-HHHHHHHhC--CCEEEEECCCHHHHHH
Confidence 9999999998888884 566677654 6799999999988753
No 45
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.52 E-value=7.2e-14 Score=141.17 Aligned_cols=129 Identities=21% Similarity=0.214 Sum_probs=85.0
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHH-HHhhcCc------cc----cCC--ceeeeccc----------
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIV-FLSHIGS------FV----PAD--AATVGLTD---------- 596 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~-~laq~g~------~v----pa~--~~~~~~~~---------- 596 (792)
.+.++++|+.. |++++|+||||||||||+|.+++.. .-...|. .+ ++. ...++++.
T Consensus 14 ~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 93 (200)
T cd03217 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVK 93 (200)
T ss_pred EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCcc
Confidence 46778888887 9999999999999999999998763 1112221 11 000 01122222
Q ss_pred -ccchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 597 -SKHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 597 -~~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+......+.++. |.++++.+...+.+|+++|+|||++|.|+.....+. .++..+.+. +.++|++||+++.+.
T Consensus 94 ~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~-~~L~~~~~~--~~tiii~sh~~~~~~ 168 (200)
T cd03217 94 NADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVA-EVINKLREE--GKSVLIITHYQRLLD 168 (200)
T ss_pred HHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHC--CCEEEEEecCHHHHH
Confidence 0011111123443 344555555567899999999999999998888774 566666654 579999999999765
No 46
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.52 E-value=7.7e-14 Score=146.23 Aligned_cols=147 Identities=16% Similarity=0.073 Sum_probs=94.1
Q ss_pred CCCcEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh---------------hcCc
Q 043119 520 LEPLLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS---------------HIGS 583 (792)
Q Consensus 520 ~~~~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la---------------q~g~ 583 (792)
+...|.+++...-+ .+..+.++++|+.. |++++|+||||||||||+|.++++.... +.-.
T Consensus 9 ~~~~l~i~~l~~~~----~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~ 84 (257)
T PRK11247 9 QGTPLLLNAVSKRY----GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTR 84 (257)
T ss_pred CCCcEEEEEEEEEE----CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceE
Confidence 34446666654433 23457789999988 9999999999999999999998764211 0012
Q ss_pred cccCCceeee---ccc-----------------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCC
Q 043119 584 FVPADAATVG---LTD-----------------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGT 636 (792)
Q Consensus 584 ~vpa~~~~~~---~~~-----------------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt 636 (792)
|+|.....++ +.+ ........+.++.++ ++++.+...+.+++++|+|||++|.
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~L 164 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGAL 164 (257)
T ss_pred EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 3443321111 000 000011123444444 4455555567899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 637 LTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 637 ~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|+.....+. .+++.+.+.. +.++|++||+.+.+.
T Consensus 165 D~~~~~~l~-~~L~~~~~~~-~~tviivsHd~~~~~ 198 (257)
T PRK11247 165 DALTRIEMQ-DLIESLWQQH-GFTVLLVTHDVSEAV 198 (257)
T ss_pred CHHHHHHHH-HHHHHHHHHc-CCEEEEEeCCHHHHH
Confidence 998888775 4666664422 579999999998764
No 47
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.51 E-value=5.7e-14 Score=143.48 Aligned_cols=130 Identities=18% Similarity=0.099 Sum_probs=85.8
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC-------------------ccccCCceee---eccc
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIG-------------------SFVPADAATV---GLTD 596 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g-------------------~~vpa~~~~~---~~~~ 596 (792)
..+.++++|+.. |++++|+||||||||||+|+++++... ..| .|+|.....+ .+.+
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 91 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP-DSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAE 91 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHH
Confidence 346778999988 999999999999999999999876421 111 2344332110 0000
Q ss_pred --------c---------------------cchhhccchhHHH-HHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHH
Q 043119 597 --------S---------------------KHMTAEQSSFMID-LHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLG 646 (792)
Q Consensus 597 --------~---------------------~~~~~~~s~f~~e-~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~ 646 (792)
. .......+.++.+ .++++.+...+.+|+++|+|||++|.|+.....+.
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~- 170 (213)
T cd03259 92 NIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELR- 170 (213)
T ss_pred HHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-
Confidence 0 0000111233433 44555555567899999999999999998888875
Q ss_pred HHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 647 GTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 647 ~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.++..+.+.. +.++|++||+.+.+.
T Consensus 171 ~~l~~~~~~~-~~tii~~sH~~~~~~ 195 (213)
T cd03259 171 EELKELQREL-GITTIYVTHDQEEAL 195 (213)
T ss_pred HHHHHHHHHc-CCEEEEEecCHHHHH
Confidence 5666665431 578999999998764
No 48
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.51 E-value=9.7e-14 Score=141.23 Aligned_cols=129 Identities=19% Similarity=0.203 Sum_probs=86.9
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH-------------------hhcCccccCCceee---eccc
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL-------------------SHIGSFVPADAATV---GLTD 596 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l-------------------aq~g~~vpa~~~~~---~~~~ 596 (792)
..+.++++|+.. |++++|+||||||||||+|+++++... .++ .|+|.+...+ .+.+
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i-~~~~q~~~~~~~~tv~e 91 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRI-GALIEAPGFYPNLTARE 91 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhE-EEecCCCccCccCcHHH
Confidence 357789999987 999999999999999999999876421 111 2444432111 0000
Q ss_pred ------------c-c------------chhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHH
Q 043119 597 ------------S-K------------HMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTIN 650 (792)
Q Consensus 597 ------------~-~------------~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~ 650 (792)
. + ........++. |.++++.+...+.+|+++|+|||++|.|+.....+. .+++
T Consensus 92 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~ 170 (208)
T cd03268 92 NLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELR-ELIL 170 (208)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHH-HHHH
Confidence 0 0 00011122333 445555566668899999999999999998888774 5676
Q ss_pred HHHhCCCCcEEEEEccChhhhh
Q 043119 651 YFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 651 ~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+.+. +.++|++||+.+.+.
T Consensus 171 ~~~~~--~~tii~~tH~~~~~~ 190 (208)
T cd03268 171 SLRDQ--GITVLISSHLLSEIQ 190 (208)
T ss_pred HHHHC--CCEEEEEcCCHHHHH
Confidence 76653 578999999998765
No 49
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.51 E-value=1.1e-13 Score=139.00 Aligned_cols=128 Identities=13% Similarity=0.145 Sum_probs=84.0
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH-hhcCc-----------------cccCCceeeeccc-ccc
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL-SHIGS-----------------FVPADAATVGLTD-SKH 599 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l-aq~g~-----------------~vpa~~~~~~~~~-~~~ 599 (792)
..+.++++|+.. |++++|+||||||||||||.+++.... ..-|. |+|.....++... .+.
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 99 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREA 99 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHH
Confidence 356788999877 999999999999999999999875321 12221 2222211111000 111
Q ss_pred hhhc--cchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhh
Q 043119 600 MTAE--QSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTEL 670 (792)
Q Consensus 600 ~~~~--~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l 670 (792)
+... ...++. |.++++.+...+.+|+++|+|||++|.|+.....+. .+++.+.+. +.++|++||+++.
T Consensus 100 l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~-~~l~~~~~~--~~tiiivtH~~~~ 170 (192)
T cd03232 100 LRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIV-RFLKKLADS--GQAILCTIHQPSA 170 (192)
T ss_pred HHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHH-HHHHHHHHc--CCEEEEEEcCChH
Confidence 1110 013333 344555555567899999999999999998888774 567777654 5799999999873
No 50
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.51 E-value=1.4e-14 Score=138.70 Aligned_cols=131 Identities=21% Similarity=0.248 Sum_probs=93.1
Q ss_pred cCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHH--------------------HHhhcCc-cccCCceee---
Q 043119 538 VDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIV--------------------FLSHIGS-FVPADAATV--- 592 (792)
Q Consensus 538 ~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~--------------------~laq~g~-~vpa~~~~~--- 592 (792)
.++.|.|+++|+.. |+++++.||||+||||.+-+|.+++ --|++|. |+|.+...+
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~L 94 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKL 94 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcC
Confidence 45789999999999 9999999999999999999876554 2366664 777765422
Q ss_pred eccc---------ccchh----------------------hccchhH-HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHH
Q 043119 593 GLTD---------SKHMT----------------------AEQSSFM-IDLHQVGMMLRQATSQSLCLLDEFGKGTLTED 640 (792)
Q Consensus 593 ~~~~---------~~~~~----------------------~~~s~f~-~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~ 640 (792)
++-| .++.. ..-.+.+ +|-+++-.+-..+.+|+++||||||+|.||..
T Consensus 95 tV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPia 174 (243)
T COG1137 95 TVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIA 174 (243)
T ss_pred cHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchh
Confidence 1111 00000 0011222 34444444444578999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEccChhhh
Q 043119 641 GIGLLGGTINYFVTCDVPPKVLVCTHLTELL 671 (792)
Q Consensus 641 ~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~ 671 (792)
-..| ..++.+|.++ +.-++++-|+...+
T Consensus 175 V~dI-q~iI~~L~~r--giGvLITDHNVREt 202 (243)
T COG1137 175 VIDI-QRIIKHLKDR--GIGVLITDHNVRET 202 (243)
T ss_pred HHHH-HHHHHHHHhC--CceEEEccccHHHH
Confidence 9999 5799999987 56789999997554
No 51
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.51 E-value=8.6e-14 Score=137.24 Aligned_cols=126 Identities=18% Similarity=0.180 Sum_probs=85.2
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCc-cccCC----------ceeeeccccc------chhh
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGS-FVPAD----------AATVGLTDSK------HMTA 602 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~-~vpa~----------~~~~~~~~~~------~~~~ 602 (792)
.+.++++++.. |++++|+||||||||||+|+++++.-.. -|. .+... ...++++..+ ....
T Consensus 16 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~ 94 (173)
T cd03246 16 PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT-SGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAE 94 (173)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC-CCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHH
Confidence 35678888887 9999999999999999999998764321 121 11000 0112222211 1111
Q ss_pred c-cchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 603 E-QSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 603 ~-~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
. .|. +|.++++.+...+.+++++|+|||++|.|+.....+. .++..+.+. +.++|++||+.+..+
T Consensus 95 ~lLS~--G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~~--~~tii~~sh~~~~~~ 160 (173)
T cd03246 95 NILSG--GQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALN-QAIAALKAA--GATRIVIAHRPETLA 160 (173)
T ss_pred HCcCH--HHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHH-HHHHHHHhC--CCEEEEEeCCHHHHH
Confidence 1 232 3445566666668999999999999999998888885 466666653 579999999998764
No 52
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.50 E-value=7e-14 Score=143.58 Aligned_cols=131 Identities=18% Similarity=0.114 Sum_probs=86.3
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh---------------hcCccccCCceeee---ccc----
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS---------------HIGSFVPADAATVG---LTD---- 596 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la---------------q~g~~vpa~~~~~~---~~~---- 596 (792)
..+.++++|+.. |++++|+||||||||||+|+++++.... +.-.|||.....++ +.+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 96 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVAL 96 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHH
Confidence 356778999887 9999999999999999999998764211 00123443321110 000
Q ss_pred -------------------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHH
Q 043119 597 -------------------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTIN 650 (792)
Q Consensus 597 -------------------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~ 650 (792)
........+.++.++ ++++.+...+.+|+++|||||++|.|+.....+. .+++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~-~~l~ 175 (220)
T cd03293 97 GLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQ-EELL 175 (220)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHH-HHHH
Confidence 000011123444444 4555555667899999999999999998888885 5666
Q ss_pred HHHhCCCCcEEEEEccChhhhh
Q 043119 651 YFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 651 ~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+.+.. +.++|++||+.+.+.
T Consensus 176 ~~~~~~-~~tiii~sH~~~~~~ 196 (220)
T cd03293 176 DIWRET-GKTVLLVTHDIDEAV 196 (220)
T ss_pred HHHHHc-CCEEEEEecCHHHHH
Confidence 664421 578999999998654
No 53
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.50 E-value=1.1e-13 Score=132.03 Aligned_cols=115 Identities=20% Similarity=0.193 Sum_probs=78.2
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccc--hhhccchhHHHHHHHHHH
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKH--MTAEQSSFMIDLHQVGMM 617 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~--~~~~~s~f~~e~~~~~~~ 617 (792)
.+..+++|+.. |++++|+||||||||||++++++.. |.....+.+-+... .....|.. +.++++.+
T Consensus 14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~---------~~~~G~i~~~~~~~i~~~~~lS~G--~~~rv~la 82 (144)
T cd03221 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL---------EPDEGIVTWGSTVKIGYFEQLSGG--EKMRLALA 82 (144)
T ss_pred eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC---------CCCceEEEECCeEEEEEEccCCHH--HHHHHHHH
Confidence 34567888877 9999999999999999999886543 22222222211000 00114433 34555555
Q ss_pred HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 618 LRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 618 l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
...+.+++++|+|||++|.|+.....+. ..++.+ +.++|++||+.+.+.
T Consensus 83 ral~~~p~illlDEP~~~LD~~~~~~l~-~~l~~~-----~~til~~th~~~~~~ 131 (144)
T cd03221 83 KLLLENPNLLLLDEPTNHLDLESIEALE-EALKEY-----PGTVILVSHDRYFLD 131 (144)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHH-HHHHHc-----CCEEEEEECCHHHHH
Confidence 5568899999999999999998877764 344443 258999999998774
No 54
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.50 E-value=8.2e-14 Score=142.46 Aligned_cols=130 Identities=18% Similarity=0.142 Sum_probs=86.4
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH-----------------------hhcCccccCCceee---
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL-----------------------SHIGSFVPADAATV--- 592 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l-----------------------aq~g~~vpa~~~~~--- 592 (792)
..+.++++|+.. |++++|+||||||||||+|.++++... .+.-.|+|.+...+
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 94 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDR 94 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCC
Confidence 356789999988 999999999999999999999876311 01112333332111
Q ss_pred eccc-----------------------------ccchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHH
Q 043119 593 GLTD-----------------------------SKHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGI 642 (792)
Q Consensus 593 ~~~~-----------------------------~~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~ 642 (792)
.+.+ ........+.++. |.++++.+...+.+|+++|||||++|.|+....
T Consensus 95 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~ 174 (214)
T TIGR02673 95 TVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSE 174 (214)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHH
Confidence 0000 0000011223443 345555555668999999999999999998888
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 643 GLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 643 ~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+. .+++.+.+. +.++|++||+++.+.
T Consensus 175 ~l~-~~l~~~~~~--~~tii~~tH~~~~~~ 201 (214)
T TIGR02673 175 RIL-DLLKRLNKR--GTTVIVATHDLSLVD 201 (214)
T ss_pred HHH-HHHHHHHHc--CCEEEEEeCCHHHHH
Confidence 885 566666554 579999999998765
No 55
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.50 E-value=1.1e-13 Score=142.05 Aligned_cols=131 Identities=15% Similarity=0.058 Sum_probs=86.8
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh-------------------hcCccccCCceee---eccc
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS-------------------HIGSFVPADAATV---GLTD 596 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la-------------------q~g~~vpa~~~~~---~~~~ 596 (792)
..+.++++|+.. |++++|+||||||||||+|+++++.... +.-.|+|...... .+.+
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 92 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWE 92 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHH
Confidence 346789999988 9999999999999999999998764210 0012344332111 0000
Q ss_pred ------------c-----------------cchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHH
Q 043119 597 ------------S-----------------KHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLG 646 (792)
Q Consensus 597 ------------~-----------------~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~ 646 (792)
. .......+.++. |.++++.+...+.+|+++|+|||++|.|+.....+.
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~- 171 (220)
T cd03265 93 NLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVW- 171 (220)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHH-
Confidence 0 000011223333 445556666668999999999999999998888775
Q ss_pred HHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 647 GTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 647 ~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.++..+.+.. +.++|++||+.+.+.
T Consensus 172 ~~l~~~~~~~-~~tvi~~tH~~~~~~ 196 (220)
T cd03265 172 EYIEKLKEEF-GMTILLTTHYMEEAE 196 (220)
T ss_pred HHHHHHHHhc-CCEEEEEeCCHHHHH
Confidence 5666665532 568999999998765
No 56
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.50 E-value=1.2e-13 Score=141.15 Aligned_cols=144 Identities=15% Similarity=0.086 Sum_probs=94.0
Q ss_pred CcEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh-----------------hcCc
Q 043119 522 PLLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS-----------------HIGS 583 (792)
Q Consensus 522 ~~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la-----------------q~g~ 583 (792)
..+.+++...-+ .+..+.++++|+.. |++++|+||||||||||+|.+++..-.. ..-.
T Consensus 10 ~~l~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~ 85 (214)
T PRK13543 10 PLLAAHALAFSR----NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMA 85 (214)
T ss_pred ceEEEeeEEEec----CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceE
Confidence 346666665543 23457889999988 9999999999999999999998764210 0012
Q ss_pred cccCCceee---eccc----------c---c-------------chhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCC
Q 043119 584 FVPADAATV---GLTD----------S---K-------------HMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFG 633 (792)
Q Consensus 584 ~vpa~~~~~---~~~~----------~---~-------------~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~ 633 (792)
|+|...... ++.+ . + ........++. |.++++.+...+.+|+++|+|||+
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 165 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPY 165 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 343322111 1110 0 0 00001123333 445566666667899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 634 KGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 634 ~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+|.|+.....+ ..+++.+.+. +.++|++||+++.+.
T Consensus 166 ~~LD~~~~~~l-~~~l~~~~~~--~~tiii~sH~~~~~~ 201 (214)
T PRK13543 166 ANLDLEGITLV-NRMISAHLRG--GGAALVTTHGAYAAP 201 (214)
T ss_pred ccCCHHHHHHH-HHHHHHHHhC--CCEEEEEecChhhhh
Confidence 99999887777 4577666654 579999999998875
No 57
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.50 E-value=5.4e-14 Score=140.97 Aligned_cols=128 Identities=16% Similarity=0.141 Sum_probs=85.0
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh----------------------hcCccccCCce--ee--
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS----------------------HIGSFVPADAA--TV-- 592 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la----------------------q~g~~vpa~~~--~~-- 592 (792)
..+.++++|+.. |++++|+||||||||||+|+++++.-.. +.-.|+|.... ..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 456789999988 9999999999999999999998654210 00124443321 00
Q ss_pred eccc-------------c----------------cchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHH
Q 043119 593 GLTD-------------S----------------KHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGI 642 (792)
Q Consensus 593 ~~~~-------------~----------------~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~ 642 (792)
.+.+ . +......+.++. |.++++.+...+.+|+++|+|||++|.|+....
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 164 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGRE 164 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 0000 0 000111233443 445555555667899999999999999998888
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEccChhh
Q 043119 643 GLLGGTINYFVTCDVPPKVLVCTHLTEL 670 (792)
Q Consensus 643 ~l~~~~~~~l~~~~~~~~~l~~TH~~~l 670 (792)
.+. .++..+.+. +.++|++||+.+.
T Consensus 165 ~~~-~~l~~~~~~--~~tili~sH~~~~ 189 (190)
T TIGR01166 165 QML-AILRRLRAE--GMTVVISTHDVDL 189 (190)
T ss_pred HHH-HHHHHHHHc--CCEEEEEeecccc
Confidence 875 566666654 5799999999875
No 58
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.49 E-value=1.2e-13 Score=140.89 Aligned_cols=129 Identities=20% Similarity=0.257 Sum_probs=85.8
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH-----------------hhcCccccCCceee---eccc--
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL-----------------SHIGSFVPADAATV---GLTD-- 596 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l-----------------aq~g~~vpa~~~~~---~~~~-- 596 (792)
..+.++++|+.. |++++|+||||||||||||++++.... .++ .|+|.....+ ++.+
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i-~~~~q~~~~~~~~tv~e~l 91 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRI-GYLPEERGLYPKMKVIDQL 91 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccE-EEeccCCcCCcCCcHHHHH
Confidence 346778888887 999999999999999999999876421 011 1344332110 0000
Q ss_pred ---c-------c-----------------chhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHH
Q 043119 597 ---S-------K-----------------HMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGT 648 (792)
Q Consensus 597 ---~-------~-----------------~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~ 648 (792)
. . ........++. |.++++.+...+.+|+++|+|||++|.|+.....+. .+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~-~~ 170 (210)
T cd03269 92 VYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLK-DV 170 (210)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH-HH
Confidence 0 0 00001122333 445555566667899999999999999998888775 46
Q ss_pred HHHHHhCCCCcEEEEEccChhhhh
Q 043119 649 INYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 649 ~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
++.+.++ +.++|++||+.+.+.
T Consensus 171 l~~~~~~--~~tii~~sH~~~~~~ 192 (210)
T cd03269 171 IRELARA--GKTVILSTHQMELVE 192 (210)
T ss_pred HHHHHHC--CCEEEEECCCHHHHH
Confidence 6666654 579999999998764
No 59
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.49 E-value=1.2e-13 Score=141.77 Aligned_cols=131 Identities=18% Similarity=0.155 Sum_probs=85.4
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh------------------------hcCccccCCceeee-
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS------------------------HIGSFVPADAATVG- 593 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la------------------------q~g~~vpa~~~~~~- 593 (792)
..+.++++|+.. |++++|+||||||||||+|+++++.-.. +.-.|+|.....++
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPD 96 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCC
Confidence 346778999988 9999999999999999999998764210 00113332211110
Q ss_pred --ccc-----------------------------ccchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHH
Q 043119 594 --LTD-----------------------------SKHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDG 641 (792)
Q Consensus 594 --~~~-----------------------------~~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~ 641 (792)
+.+ .........+++. |.++++.+...+.+|+++|||||++|.|+...
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~ 176 (218)
T cd03255 97 LTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETG 176 (218)
T ss_pred CcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHH
Confidence 000 0000011223333 44555555566899999999999999999887
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 642 IGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 642 ~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+. .++..+.+.. +.++|++||+.+.+.
T Consensus 177 ~~l~-~~l~~~~~~~-~~tii~~sH~~~~~~ 205 (218)
T cd03255 177 KEVM-ELLRELNKEA-GTTIVVVTHDPELAE 205 (218)
T ss_pred HHHH-HHHHHHHHhc-CCeEEEEECCHHHHh
Confidence 7774 5666666521 579999999998764
No 60
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.49 E-value=9.3e-14 Score=142.25 Aligned_cols=129 Identities=19% Similarity=0.136 Sum_probs=86.5
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH-----------------------hhcCccccCCceee---e
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL-----------------------SHIGSFVPADAATV---G 593 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l-----------------------aq~g~~vpa~~~~~---~ 593 (792)
.+.++++|+.. |++++|+||||||||||+|.++++.-. .+.-.|+|.....+ .
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRT 96 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCcccccccc
Confidence 46778999988 999999999999999999999875311 01112344332111 0
Q ss_pred ccc-----------------------------ccchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHH
Q 043119 594 LTD-----------------------------SKHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIG 643 (792)
Q Consensus 594 ~~~-----------------------------~~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~ 643 (792)
+.+ ........+.++. |.++++.+...+.+|+++|+|||++|.|+.....
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 176 (216)
T TIGR00960 97 VYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRD 176 (216)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHH
Confidence 000 0000011223333 4455555566689999999999999999988888
Q ss_pred HHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 644 LLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 644 l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+. .++..+.+. +.++|++||+.+.+.
T Consensus 177 l~-~~l~~~~~~--~~tii~vsH~~~~~~ 202 (216)
T TIGR00960 177 IM-RLFEEFNRR--GTTVLVATHDINLVE 202 (216)
T ss_pred HH-HHHHHHHHC--CCEEEEEeCCHHHHH
Confidence 85 466666553 578999999998765
No 61
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.49 E-value=1.2e-13 Score=135.60 Aligned_cols=116 Identities=20% Similarity=0.144 Sum_probs=75.6
Q ss_pred ecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhccchhHHHHHHHHHHHHhCCCCeE
Q 043119 548 IDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQATSQSL 626 (792)
Q Consensus 548 ~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~~~~sl 626 (792)
++.+ |++++|+||||||||||+|.++++... ..|. |--....++..... . .+|.. |.++++.+...+.++++
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~-i~~~g~~i~~~~q~-~--~LSgG--q~qrv~laral~~~p~l 92 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIP-NGDN-DEWDGITPVYKPQY-I--DLSGG--ELQRVAIAAALLRNATF 92 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCC-CCcE-EEECCEEEEEEccc-C--CCCHH--HHHHHHHHHHHhcCCCE
Confidence 3444 899999999999999999988765322 1121 10000112222111 0 14433 33444445555789999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 627 CLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 627 vllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+|+|||++|.|+.....+.. .+..+.+++ +.++|++||+++.+.
T Consensus 93 llLDEPts~LD~~~~~~l~~-~l~~~~~~~-~~tiiivsH~~~~~~ 136 (177)
T cd03222 93 YLFDEPSAYLDIEQRLNAAR-AIRRLSEEG-KKTALVVEHDLAVLD 136 (177)
T ss_pred EEEECCcccCCHHHHHHHHH-HHHHHHHcC-CCEEEEEECCHHHHH
Confidence 99999999999998888865 555555432 368999999998875
No 62
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.49 E-value=1.2e-13 Score=140.86 Aligned_cols=130 Identities=18% Similarity=0.171 Sum_probs=86.9
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hcCccccCCce-ee---ec
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------------HIGSFVPADAA-TV---GL 594 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------------q~g~~vpa~~~-~~---~~ 594 (792)
..+.++++|+.. |++++|+||||||||||+|+++++.... +.-.|+|.... .+ .+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~ 93 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTV 93 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcH
Confidence 346778999887 9999999999999999999998764210 11124444321 01 10
Q ss_pred cc-----------------------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHH
Q 043119 595 TD-----------------------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGL 644 (792)
Q Consensus 595 ~~-----------------------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l 644 (792)
.+ ........+.++.++ ++++.+...+.+|+++|+|||++|.|+.....+
T Consensus 94 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~ 173 (211)
T cd03225 94 EEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL 173 (211)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 00 000011123444444 445555556789999999999999999888888
Q ss_pred HHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 645 LGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 645 ~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
. .++..+.+. +.++|++||+.+.+.
T Consensus 174 ~-~~l~~~~~~--~~tvi~~sH~~~~~~ 198 (211)
T cd03225 174 L-ELLKKLKAE--GKTIIIVTHDLDLLL 198 (211)
T ss_pred H-HHHHHHHHc--CCEEEEEeCCHHHHH
Confidence 5 466666654 579999999998775
No 63
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.49 E-value=1.4e-13 Score=142.55 Aligned_cols=130 Identities=20% Similarity=0.152 Sum_probs=85.8
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh---------------------hcCccccCCceee---ec
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS---------------------HIGSFVPADAATV---GL 594 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la---------------------q~g~~vpa~~~~~---~~ 594 (792)
..+.++++|+.. |++++|+||||||||||||.++++.... ..-.|+|.....+ .+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTV 92 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcH
Confidence 346789999887 9999999999999999999998764210 0011333322110 00
Q ss_pred cc-----------c------------------cchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHH
Q 043119 595 TD-----------S------------------KHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGL 644 (792)
Q Consensus 595 ~~-----------~------------------~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l 644 (792)
.+ . .......+.++. |.++++.+...+.+|+++|+|||++|.|+.....+
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~ 172 (232)
T cd03218 93 EENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI 172 (232)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH
Confidence 00 0 000011223333 34555556666789999999999999999888777
Q ss_pred HHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 645 LGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 645 ~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
. .+++.+.+. +.++|++||+.+.+.
T Consensus 173 ~-~~l~~~~~~--~~tii~~sH~~~~~~ 197 (232)
T cd03218 173 Q-KIIKILKDR--GIGVLITDHNVRETL 197 (232)
T ss_pred H-HHHHHHHHC--CCEEEEEeCCHHHHH
Confidence 4 567777654 578999999997654
No 64
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.49 E-value=1.5e-13 Score=136.12 Aligned_cols=124 Identities=16% Similarity=0.105 Sum_probs=83.8
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC--------------------ccccCCceeeeccc-cc
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIG--------------------SFVPADAATVGLTD-SK 598 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g--------------------~~vpa~~~~~~~~~-~~ 598 (792)
.+..+++|+.. |++++|+||||||||||+|+++++... ..| .|+|.....++ .. .+
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~ 93 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTLRN 93 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccHHH
Confidence 46678889888 999999999999999999999876421 112 12222111000 00 11
Q ss_pred chhhccchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 599 HMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 599 ~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
++...+|. +|.+++..+...+.+|+++|+|||++|.|+.....+. ..++.+. + +.++|++||+.+...
T Consensus 94 ~i~~~LS~--G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~-~~l~~~~-~--~~tii~~sh~~~~~~ 161 (178)
T cd03247 94 NLGRRFSG--GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLL-SLIFEVL-K--DKTLIWITHHLTGIE 161 (178)
T ss_pred hhcccCCH--HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH-HHHHHHc-C--CCEEEEEecCHHHHH
Confidence 11222332 3445555555568999999999999999998877774 4666664 2 579999999998864
No 65
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.49 E-value=1.1e-13 Score=141.53 Aligned_cols=129 Identities=14% Similarity=0.105 Sum_probs=85.0
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC-------------------ccccCCceee---eccc-
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIG-------------------SFVPADAATV---GLTD- 596 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g-------------------~~vpa~~~~~---~~~~- 596 (792)
.+.++++|+.. |++++|+||||||||||+|.++++... ..| .|+|.....+ .+.+
T Consensus 14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 92 (213)
T cd03301 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP-TSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDN 92 (213)
T ss_pred eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHH
Confidence 46678999988 999999999999999999999876421 111 1333321110 0000
Q ss_pred -----------cc-----------------chhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHH
Q 043119 597 -----------SK-----------------HMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGG 647 (792)
Q Consensus 597 -----------~~-----------------~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~ 647 (792)
.+ ......++++.++ ++++.+...+.+|+++|+|||++|.|+.....+. .
T Consensus 93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~-~ 171 (213)
T cd03301 93 IAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMR-A 171 (213)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-H
Confidence 00 0000122334333 4455555567899999999999999998888875 5
Q ss_pred HHHHHHhCCCCcEEEEEccChhhhh
Q 043119 648 TINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 648 ~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+++.+.+.. +.++|++||+.+.+.
T Consensus 172 ~l~~~~~~~-~~tvi~~sH~~~~~~ 195 (213)
T cd03301 172 ELKRLQQRL-GTTTIYVTHDQVEAM 195 (213)
T ss_pred HHHHHHHHc-CCEEEEEeCCHHHHH
Confidence 666666532 579999999998764
No 66
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.48 E-value=1.3e-13 Score=144.72 Aligned_cols=130 Identities=18% Similarity=0.118 Sum_probs=86.0
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC----------------ccccCCceeee---ccc---
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIG----------------SFVPADAATVG---LTD--- 596 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g----------------~~vpa~~~~~~---~~~--- 596 (792)
..+.++++|+.. |++++|+||||||||||||+++++.... -| .|+|.....++ +.+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~ 92 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ-HGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVA 92 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHH
Confidence 456789999988 9999999999999999999998764211 11 13333211100 000
Q ss_pred --------------------------ccchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHH
Q 043119 597 --------------------------SKHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTI 649 (792)
Q Consensus 597 --------------------------~~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~ 649 (792)
........+.++. +.++++.+...+.+|+++|||||++|.|+.....+. .++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~L 171 (255)
T PRK11248 93 FGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQ-TLL 171 (255)
T ss_pred hHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHH
Confidence 0000011223333 344555555567899999999999999998888875 566
Q ss_pred HHHHhCCCCcEEEEEccChhhhh
Q 043119 650 NYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 650 ~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+.+.. +.++|++||+.+.+.
T Consensus 172 ~~~~~~~-g~tviivsH~~~~~~ 193 (255)
T PRK11248 172 LKLWQET-GKQVLLITHDIEEAV 193 (255)
T ss_pred HHHHHhc-CCEEEEEeCCHHHHH
Confidence 6664422 578999999998765
No 67
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.48 E-value=8.8e-14 Score=141.21 Aligned_cols=128 Identities=22% Similarity=0.185 Sum_probs=85.7
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH------------------hhcCccccCCce----eeeccc-
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL------------------SHIGSFVPADAA----TVGLTD- 596 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l------------------aq~g~~vpa~~~----~~~~~~- 596 (792)
.+.++++|+.. |++++|+||||||||||||.++++.-. .++ .|+|.+.. ...+.+
T Consensus 14 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i-~~~~q~~~~~~~~~tv~e~ 92 (205)
T cd03226 14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSI-GYVMQDVDYQLFTDSVREE 92 (205)
T ss_pred ceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcce-EEEecChhhhhhhccHHHH
Confidence 46678888887 999999999999999999999876411 012 24444421 001111
Q ss_pred ------------------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 043119 597 ------------------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINY 651 (792)
Q Consensus 597 ------------------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~ 651 (792)
.+......+.++.++ ++++.+...+.+|+++|+|||++|.|+.....+. .++..
T Consensus 93 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~ 171 (205)
T cd03226 93 LLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVG-ELIRE 171 (205)
T ss_pred HhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHH-HHHHH
Confidence 000011123344444 4455555567899999999999999998888774 56766
Q ss_pred HHhCCCCcEEEEEccChhhhh
Q 043119 652 FVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 652 l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+.+. +.++|++||+++.+.
T Consensus 172 ~~~~--~~tii~~sH~~~~~~ 190 (205)
T cd03226 172 LAAQ--GKAVIVITHDYEFLA 190 (205)
T ss_pred HHHC--CCEEEEEeCCHHHHH
Confidence 6554 578999999998765
No 68
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.48 E-value=1.7e-13 Score=147.39 Aligned_cols=131 Identities=15% Similarity=0.209 Sum_probs=87.6
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh-------------------hcCccccCCceee---ecc
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS-------------------HIGSFVPADAATV---GLT 595 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la-------------------q~g~~vpa~~~~~---~~~ 595 (792)
+..+.++++|+.. |++++|+|||||||||+||+++++...- +.-.|+|....-. .+.
T Consensus 14 ~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~ 93 (301)
T TIGR03522 14 TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVR 93 (301)
T ss_pred CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHH
Confidence 3457889999988 9999999999999999999998763210 1112344432111 000
Q ss_pred c-----------------------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHH
Q 043119 596 D-----------------------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLL 645 (792)
Q Consensus 596 ~-----------------------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~ 645 (792)
+ ........+.++.++ ++++.+...+.+|+++|||||++|.|+.....+
T Consensus 94 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l- 172 (301)
T TIGR03522 94 EYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEI- 172 (301)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-
Confidence 0 000011123344444 445555556899999999999999999888777
Q ss_pred HHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 646 GGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 646 ~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
+.+++.+.+ +.++|++||+++.+..
T Consensus 173 ~~~l~~~~~---~~tiii~sH~l~~~~~ 197 (301)
T TIGR03522 173 RNVIKNIGK---DKTIILSTHIMQEVEA 197 (301)
T ss_pred HHHHHHhcC---CCEEEEEcCCHHHHHH
Confidence 456677653 4689999999987653
No 69
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.48 E-value=2e-13 Score=141.73 Aligned_cols=131 Identities=16% Similarity=0.068 Sum_probs=86.3
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh-----------------------hcCccccCCceee---
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS-----------------------HIGSFVPADAATV--- 592 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la-----------------------q~g~~vpa~~~~~--- 592 (792)
..+.++++|+.. |++++|+||||||||||+|.++++.... +.-.|||.....+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSL 92 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCC
Confidence 346779999988 9999999999999999999998664210 0012344332111
Q ss_pred eccc------------------------------ccchhhccchhHHH-HHHHHHHHHhCCCCeEEEEeCCCCCCCHHHH
Q 043119 593 GLTD------------------------------SKHMTAEQSSFMID-LHQVGMMLRQATSQSLCLLDEFGKGTLTEDG 641 (792)
Q Consensus 593 ~~~~------------------------------~~~~~~~~s~f~~e-~~~~~~~l~~~~~~slvllDE~~~gt~~~~~ 641 (792)
.+.+ ........+.++.+ .++++.+...+.+|+++|+|||++|.|+...
T Consensus 93 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~ 172 (235)
T cd03261 93 TVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIAS 172 (235)
T ss_pred cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHH
Confidence 0000 00000112334444 4555555566789999999999999999888
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 642 IGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 642 ~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+. .+++.+.+.. +.++|++||+++.+.
T Consensus 173 ~~l~-~~l~~~~~~~-~~tvi~vsH~~~~~~ 201 (235)
T cd03261 173 GVID-DLIRSLKKEL-GLTSIMVTHDLDTAF 201 (235)
T ss_pred HHHH-HHHHHHHHhc-CcEEEEEecCHHHHH
Confidence 8775 5666665521 578999999998764
No 70
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.48 E-value=1.7e-13 Score=142.07 Aligned_cols=131 Identities=15% Similarity=0.119 Sum_probs=86.3
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh------------------------hcCccccCCceee--
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS------------------------HIGSFVPADAATV-- 592 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la------------------------q~g~~vpa~~~~~-- 592 (792)
..+.++++|+.. |++++|+||||||||||+|+++++.-.. +.-.|+|.....+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 101 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPD 101 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCC
Confidence 357889999988 9999999999999999999998764210 0011333331110
Q ss_pred -eccc-----------------------------ccchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHH
Q 043119 593 -GLTD-----------------------------SKHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDG 641 (792)
Q Consensus 593 -~~~~-----------------------------~~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~ 641 (792)
.+.+ ..........++. |.++++.+...+.+|+++|+|||++|.|+...
T Consensus 102 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 181 (233)
T PRK11629 102 FTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181 (233)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 0000 0000001123333 34455555566789999999999999999887
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 642 IGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 642 ~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+. .+++.+.+.. +.++|++||+.+.+.
T Consensus 182 ~~l~-~~l~~~~~~~-g~tvii~sH~~~~~~ 210 (233)
T PRK11629 182 DSIF-QLLGELNRLQ-GTAFLVVTHDLQLAK 210 (233)
T ss_pred HHHH-HHHHHHHHhC-CCEEEEEeCCHHHHH
Confidence 7774 5677765432 579999999998865
No 71
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.1e-13 Score=134.05 Aligned_cols=128 Identities=24% Similarity=0.291 Sum_probs=88.5
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHH----------------------HHhhcCccc----cCCceee
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIV----------------------FLSHIGSFV----PADAATV 592 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~----------------------~laq~g~~v----pa~~~~~ 592 (792)
+-|..+++++.+ |++++|.||||||||||.++|++.- --|..|.|+ |++-.-+
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV 96 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGV 96 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCe
Confidence 488999999998 9999999999999999999886532 124445443 3322211
Q ss_pred eccc-------------------------------------ccchhhccchhHHHHHHHHHHHHh-CCCCeEEEEeCCCC
Q 043119 593 GLTD-------------------------------------SKHMTAEQSSFMIDLHQVGMMLRQ-ATSQSLCLLDEFGK 634 (792)
Q Consensus 593 ~~~~-------------------------------------~~~~~~~~s~f~~e~~~~~~~l~~-~~~~slvllDE~~~ 634 (792)
...+ .|.+.. .|+++-+....+++. +-+|+++|||||-+
T Consensus 97 ~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~---GFSGGEkKR~EilQ~~~lePkl~ILDE~DS 173 (251)
T COG0396 97 TNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNE---GFSGGEKKRNEILQLLLLEPKLAILDEPDS 173 (251)
T ss_pred eHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCC---CcCcchHHHHHHHHHHhcCCCEEEecCCCc
Confidence 1111 112222 233333333444443 46999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 635 GTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 635 gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
|.|. |+..+....++.+.+. +..++++|||.++++.
T Consensus 174 GLDI-dalk~V~~~i~~lr~~--~~~~liITHy~rll~~ 209 (251)
T COG0396 174 GLDI-DALKIVAEGINALREE--GRGVLIITHYQRLLDY 209 (251)
T ss_pred CccH-HHHHHHHHHHHHHhcC--CCeEEEEecHHHHHhh
Confidence 9997 6666666788888876 5689999999999873
No 72
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.48 E-value=1.7e-13 Score=141.00 Aligned_cols=129 Identities=14% Similarity=0.113 Sum_probs=84.2
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh---------------------hcCccccCCceeee---cc
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS---------------------HIGSFVPADAATVG---LT 595 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la---------------------q~g~~vpa~~~~~~---~~ 595 (792)
.+.++++|+.. |++++|+||||||||||||+++++.-.. +.-.|+|.....++ +.
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 93 (222)
T cd03224 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVE 93 (222)
T ss_pred eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHH
Confidence 45678899887 9999999999999999999998664210 00113333321110 00
Q ss_pred c--------c--c-----------ch-------hhccchhHHH-HHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHH
Q 043119 596 D--------S--K-----------HM-------TAEQSSFMID-LHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLG 646 (792)
Q Consensus 596 ~--------~--~-----------~~-------~~~~s~f~~e-~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~ 646 (792)
+ . . .+ ....+.++.+ .++++.+...+.+|+++|+|||++|.|+.....+.
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~- 172 (222)
T cd03224 94 ENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIF- 172 (222)
T ss_pred HHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHH-
Confidence 0 0 0 00 0001223333 34455555567899999999999999998888775
Q ss_pred HHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 647 GTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 647 ~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+++.+.+. +.++|++||+++.+.
T Consensus 173 ~~l~~~~~~--~~tiii~sH~~~~~~ 196 (222)
T cd03224 173 EAIRELRDE--GVTILLVEQNARFAL 196 (222)
T ss_pred HHHHHHHHC--CCEEEEEeCCHHHHH
Confidence 566666653 579999999998764
No 73
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.48 E-value=1.7e-13 Score=132.85 Aligned_cols=121 Identities=20% Similarity=0.227 Sum_probs=82.8
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeeccccc-------chhhccch---hH-
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSK-------HMTAEQSS---FM- 608 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~-------~~~~~~s~---f~- 608 (792)
.+.++++++.. |++++|+||||+|||||+++++++. |....++.+-+.. ......+. ++
T Consensus 13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~---------~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~ 83 (157)
T cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL---------KPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSG 83 (157)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC---------CCCccEEEECCEEcccCCHHHHHhceEEEeeCCH
Confidence 45667788877 8999999999999999999987543 2223333222100 00011111 33
Q ss_pred HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 609 IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 609 ~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
+|.++++.+...+.+++++++|||++|+|+.....+. .++..+.+. +.+++++||+++.+..
T Consensus 84 G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~-~~l~~~~~~--~~tii~~sh~~~~~~~ 145 (157)
T cd00267 84 GQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLL-ELLRELAEE--GRTVIIVTHDPELAEL 145 (157)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHC--CCEEEEEeCCHHHHHH
Confidence 3455555555667899999999999999998888875 455566553 4789999999998763
No 74
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.48 E-value=1.3e-13 Score=137.04 Aligned_cols=133 Identities=22% Similarity=0.221 Sum_probs=86.7
Q ss_pred cCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH--------Hh--------------hcCcc--------cc
Q 043119 538 VDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF--------LS--------------HIGSF--------VP 586 (792)
Q Consensus 538 ~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~--------la--------------q~g~~--------vp 586 (792)
.++.+..|+++..+ |+=|+|+|||||||||||+.++.-.. ++ .+|.- -+
T Consensus 42 ~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~ 121 (257)
T COG1119 42 NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRV 121 (257)
T ss_pred CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhccc
Confidence 35778889999998 99999999999999999998864321 11 12210 01
Q ss_pred CC----------ceeeecc--c------------------ccchhhccchhHHHHHHHHHHHH-hCCCCeEEEEeCCCCC
Q 043119 587 AD----------AATVGLT--D------------------SKHMTAEQSSFMIDLHQVGMMLR-QATSQSLCLLDEFGKG 635 (792)
Q Consensus 587 a~----------~~~~~~~--~------------------~~~~~~~~s~f~~e~~~~~~~l~-~~~~~slvllDE~~~g 635 (792)
.. .+.+++. + .....+...+.+.+.++...|.+ .+..|.|+|||||+.|
T Consensus 122 ~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~G 201 (257)
T COG1119 122 RETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQG 201 (257)
T ss_pred ccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCcccc
Confidence 00 0111211 0 00011123344555555555544 4699999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhh
Q 043119 636 TLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELL 671 (792)
Q Consensus 636 t~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~ 671 (792)
.|..-+..+.. .+..+.....++++|++||+.|.+
T Consensus 202 LDl~~re~ll~-~l~~~~~~~~~~~ll~VtHh~eEi 236 (257)
T COG1119 202 LDLIAREQLLN-RLEELAASPGAPALLFVTHHAEEI 236 (257)
T ss_pred CChHHHHHHHH-HHHHHhcCCCCceEEEEEcchhhc
Confidence 99988877754 555665543478999999998865
No 75
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.48 E-value=2.1e-13 Score=135.42 Aligned_cols=130 Identities=19% Similarity=0.213 Sum_probs=86.9
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH----------------------------HhhcCcc-----
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF----------------------------LSHIGSF----- 584 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~----------------------------laq~g~~----- 584 (792)
+..+.+|++|+.+ |++++++||.||||||+||+|-.++- +-|+|.|
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv 92 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTV 92 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccH
Confidence 4667889999998 99999999999999999999965431 1123322
Q ss_pred ------ccCCcee------------eeccc--c----cchhhccchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHH
Q 043119 585 ------VPADAAT------------VGLTD--S----KHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTED 640 (792)
Q Consensus 585 ------vpa~~~~------------~~~~~--~----~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~ 640 (792)
||.-..+ +.+++ + +.....+|. ++.+++.-+-+.|.+|.++||||||...||..
T Consensus 93 ~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSG--GQQQRVGv~RALAadP~ilLMDEPFgALDpI~ 170 (309)
T COG1125 93 AENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSG--GQQQRVGVARALAADPPILLMDEPFGALDPIT 170 (309)
T ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCc--chhhHHHHHHHHhcCCCeEeecCCccccChhh
Confidence 1111100 00000 0 011122343 23455555555588999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 641 GIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 641 ~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+..+-..+ ..+.++ .+.|++|+|||++.+-
T Consensus 171 R~~lQ~e~-~~lq~~-l~kTivfVTHDidEA~ 200 (309)
T COG1125 171 RKQLQEEI-KELQKE-LGKTIVFVTHDIDEAL 200 (309)
T ss_pred HHHHHHHH-HHHHHH-hCCEEEEEecCHHHHH
Confidence 99996544 445443 3789999999998764
No 76
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.48 E-value=2.7e-13 Score=142.11 Aligned_cols=129 Identities=19% Similarity=0.198 Sum_probs=86.1
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC-----------------------------ccccCCc
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIG-----------------------------SFVPADA 589 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g-----------------------------~~vpa~~ 589 (792)
..+.++++|+.. |++++|+||||||||||+|+++++.-. .-| .|||...
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~ 94 (250)
T PRK11264 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP-EAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNF 94 (250)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCc
Confidence 357789999988 999999999999999999999876321 111 2333322
Q ss_pred eeee---ccc--c------c----------------------chhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCC
Q 043119 590 ATVG---LTD--S------K----------------------HMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKG 635 (792)
Q Consensus 590 ~~~~---~~~--~------~----------------------~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~g 635 (792)
..++ +.+ . + ......+.++. |.++++.+...+.+|+++|+|||++|
T Consensus 95 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~ 174 (250)
T PRK11264 95 NLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSA 174 (250)
T ss_pred ccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 1110 000 0 0 00011223333 34555555566789999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 636 TLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 636 t~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.|+.....+. .+++.+.+. +.++|++||+.+.+.
T Consensus 175 LD~~~~~~l~-~~l~~~~~~--~~tvi~~tH~~~~~~ 208 (250)
T PRK11264 175 LDPELVGEVL-NTIRQLAQE--KRTMVIVTHEMSFAR 208 (250)
T ss_pred CCHHHHHHHH-HHHHHHHhc--CCEEEEEeCCHHHHH
Confidence 9998887774 567777654 578999999998764
No 77
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.48 E-value=2.2e-13 Score=139.70 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=85.9
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh-------------------hcCccccCCceee---eccc-
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS-------------------HIGSFVPADAATV---GLTD- 596 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la-------------------q~g~~vpa~~~~~---~~~~- 596 (792)
.+.++++|+.. |++++|+||||||||||||+++++.... +.-.|+|....-+ .+.+
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 98 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAREN 98 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHH
Confidence 56789999988 9999999999999999999998764211 0011333332110 0000
Q ss_pred ----------------------------ccchhhccchhH-HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHH
Q 043119 597 ----------------------------SKHMTAEQSSFM-IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGG 647 (792)
Q Consensus 597 ----------------------------~~~~~~~~s~f~-~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~ 647 (792)
.+........++ +|.++++.+...+.+|+++|+|||++|.|+.....+. .
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~-~ 177 (218)
T cd03266 99 LEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALR-E 177 (218)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHH-H
Confidence 000000112223 3445555556667999999999999999998888775 5
Q ss_pred HHHHHHhCCCCcEEEEEccChhhhh
Q 043119 648 TINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 648 ~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+++.+.+. +.++|++||+.+.+.
T Consensus 178 ~l~~~~~~--~~tii~~tH~~~~~~ 200 (218)
T cd03266 178 FIRQLRAL--GKCILFSTHIMQEVE 200 (218)
T ss_pred HHHHHHHC--CCEEEEEeCCHHHHH
Confidence 66666654 579999999998764
No 78
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.47 E-value=2.9e-13 Score=136.83 Aligned_cols=130 Identities=18% Similarity=0.144 Sum_probs=87.1
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhcCccccCCcee---eecc
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------------------SHIGSFVPADAAT---VGLT 595 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------------------aq~g~~vpa~~~~---~~~~ 595 (792)
..+.++++|+.. |++++|+||||||||||+|++++.... .++| |+|..... ..+.
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv~ 92 (200)
T PRK13540 14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLC-FVGHRSGINPYLTLR 92 (200)
T ss_pred eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheE-EeccccccCcCCCHH
Confidence 346779999987 999999999999999999999866411 1222 33322110 0011
Q ss_pred c------------------------ccchhhccchhH-HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHH
Q 043119 596 D------------------------SKHMTAEQSSFM-IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTIN 650 (792)
Q Consensus 596 ~------------------------~~~~~~~~s~f~-~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~ 650 (792)
+ ..........++ +|.++++.+...+.+|+++|+|||++|.|+.....+. .+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~-~~l~ 171 (200)
T PRK13540 93 ENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTII-TKIQ 171 (200)
T ss_pred HHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHH-HHHH
Confidence 1 000001112333 3556666666678999999999999999998888875 4566
Q ss_pred HHHhCCCCcEEEEEccChhhhhc
Q 043119 651 YFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 651 ~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
.+.+. +.++|++||+.+.++.
T Consensus 172 ~~~~~--~~tiii~sh~~~~~~~ 192 (200)
T PRK13540 172 EHRAK--GGAVLLTSHQDLPLNK 192 (200)
T ss_pred HHHHc--CCEEEEEeCCchhccc
Confidence 66554 5789999999988753
No 79
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.47 E-value=9.8e-14 Score=141.84 Aligned_cols=145 Identities=20% Similarity=0.186 Sum_probs=95.5
Q ss_pred EEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCC-----------cee
Q 043119 524 LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPAD-----------AAT 591 (792)
Q Consensus 524 l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~-----------~~~ 591 (792)
+.+++..+.+-. ...+..|++++.. |+.++|+|||||||||++++++++......-.++-.. ...
T Consensus 4 i~~~~l~~~y~~---~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 4 IEAENLSFRYPG---RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred EEEEEEEEEcCC---CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 445555554421 1477889999998 9999999999999999999998776443211111100 001
Q ss_pred eeccc---------------------------cc----------------chhhccchhH-HHHHHHHHHHHhCCCCeEE
Q 043119 592 VGLTD---------------------------SK----------------HMTAEQSSFM-IDLHQVGMMLRQATSQSLC 627 (792)
Q Consensus 592 ~~~~~---------------------------~~----------------~~~~~~s~f~-~e~~~~~~~l~~~~~~slv 627 (792)
++++- .+ .......+.+ +|+++++.+-..|.+|.++
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~il 160 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEIL 160 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEE
Confidence 11110 00 0000111112 4566666666678999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 628 LLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 628 llDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
|+|||++|.||.....+. .++..|.+.+ +.++|++||+++.+..
T Consensus 161 iLDEPta~LD~~~~~~l~-~~l~~L~~~~-~~tii~~tHd~~~~~~ 204 (235)
T COG1122 161 LLDEPTAGLDPKGRRELL-ELLKKLKEEG-GKTIIIVTHDLELVLE 204 (235)
T ss_pred EEcCCCCCCCHHHHHHHH-HHHHHHHhcC-CCeEEEEeCcHHHHHh
Confidence 999999999998888875 5788887653 5799999999998753
No 80
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.47 E-value=2.2e-13 Score=139.83 Aligned_cols=128 Identities=15% Similarity=0.136 Sum_probs=85.7
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hcCccccCCceee---ecc
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------------HIGSFVPADAATV---GLT 595 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------------q~g~~vpa~~~~~---~~~ 595 (792)
..+.++++|+.. |++++|+||||||||||+|+++++.-.. ++ .|+|.....+ .+.
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i-~~v~q~~~~~~~~tv~ 93 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSL-GYCPQFDALFDELTVR 93 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhE-EEecCcCCccccCCHH
Confidence 346779999988 9999999999999999999998764210 11 1333322111 000
Q ss_pred c------------c-----------------cchhhccchhH-HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHH
Q 043119 596 D------------S-----------------KHMTAEQSSFM-IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLL 645 (792)
Q Consensus 596 ~------------~-----------------~~~~~~~s~f~-~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~ 645 (792)
+ . .......++++ +|.++++.+...+.+|+++|+|||++|.|+.....+.
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~ 173 (220)
T cd03263 94 EHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW 173 (220)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHH
Confidence 0 0 00001122333 3445566666678999999999999999998887775
Q ss_pred HHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 646 GGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 646 ~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+++.+.+ +.++|++||+++.+.
T Consensus 174 -~~l~~~~~---~~tii~~sH~~~~~~ 196 (220)
T cd03263 174 -DLILEVRK---GRSIILTTHSMDEAE 196 (220)
T ss_pred -HHHHHHhc---CCEEEEEcCCHHHHH
Confidence 46666654 368999999999875
No 81
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.47 E-value=1.1e-13 Score=137.34 Aligned_cols=129 Identities=20% Similarity=0.174 Sum_probs=84.2
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCc------cccCC-----ceeeeccc--------ccch
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGS------FVPAD-----AATVGLTD--------SKHM 600 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~------~vpa~-----~~~~~~~~--------~~~~ 600 (792)
.+.++++|+.. |++++|+||||||||||+|.+++.... .-|. .+... ...++++. .+..
T Consensus 13 ~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~ 91 (180)
T cd03214 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLA 91 (180)
T ss_pred eeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHh
Confidence 45678888877 999999999999999999999865321 2221 11000 00111110 0111
Q ss_pred hhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 601 TAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 601 ~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
......++. +.++++.+...+.+|+++|+|||++|.|+.....+. .+++.+.+.. +.++|++||+.+.+.
T Consensus 92 ~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~-~~l~~~~~~~-~~tiii~sh~~~~~~ 162 (180)
T cd03214 92 DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELL-ELLRRLARER-GKTVVMVLHDLNLAA 162 (180)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhc-CCEEEEEeCCHHHHH
Confidence 122233333 445555555668999999999999999998888775 5666665531 469999999998764
No 82
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.47 E-value=2.1e-13 Score=141.08 Aligned_cols=130 Identities=15% Similarity=0.161 Sum_probs=86.0
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH---------------------hhcCccccCCceeee---cc
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL---------------------SHIGSFVPADAATVG---LT 595 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l---------------------aq~g~~vpa~~~~~~---~~ 595 (792)
.+.++++|+.. |++++|+||||||||||+|+++++.-. .+.-.|+|.+...++ +.
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (230)
T TIGR03410 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVE 93 (230)
T ss_pred EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHH
Confidence 46678999988 999999999999999999999876421 011124444322111 00
Q ss_pred c--------c-c------------------chhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHH
Q 043119 596 D--------S-K------------------HMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGG 647 (792)
Q Consensus 596 ~--------~-~------------------~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~ 647 (792)
+ . . ......+.++. |.++++.+...+.+|+++|+|||++|.|+.....+. .
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~-~ 172 (230)
T TIGR03410 94 ENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIG-R 172 (230)
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH-H
Confidence 0 0 0 00011122333 334455555567899999999999999998888885 5
Q ss_pred HHHHHHhCCCCcEEEEEccChhhhh
Q 043119 648 TINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 648 ~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
++..+.+.. +.++|++||+++.+.
T Consensus 173 ~l~~~~~~~-~~tii~~sH~~~~~~ 196 (230)
T TIGR03410 173 VIRRLRAEG-GMAILLVEQYLDFAR 196 (230)
T ss_pred HHHHHHHcC-CcEEEEEeCCHHHHH
Confidence 666666532 579999999998875
No 83
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.47 E-value=1.8e-13 Score=137.49 Aligned_cols=124 Identities=17% Similarity=0.223 Sum_probs=83.2
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHH--HHhhcCc------cccC--Cceeeeccc-----------c
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIV--FLSHIGS------FVPA--DAATVGLTD-----------S 597 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~--~laq~g~------~vpa--~~~~~~~~~-----------~ 597 (792)
..+.++++|+.. |++++|+||||||||||+|+++++. -.. .|. .+.. ....++++. .
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~-~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 100 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV-SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVR 100 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC-ceEEEECCEeCchHhhhheEEEccCcccCCCCCcHH
Confidence 457789999988 9999999999999999999998765 221 121 0000 001122211 0
Q ss_pred cchh--h---ccchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChh
Q 043119 598 KHMT--A---EQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTE 669 (792)
Q Consensus 598 ~~~~--~---~~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~ 669 (792)
+.+. . .+|. +|.++++.+...+.+|+++|+|||++|.|+.....+. .+++.+.++ +.++|++||+++
T Consensus 101 ~~i~~~~~~~~LS~--G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~--~~tiii~sh~~~ 172 (194)
T cd03213 101 ETLMFAAKLRGLSG--GERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVM-SLLRRLADT--GRTIICSIHQPS 172 (194)
T ss_pred HHHHHHHHhccCCH--HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhC--CCEEEEEecCch
Confidence 1111 0 2332 3344555555567899999999999999998887774 566676654 679999999985
No 84
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.47 E-value=1.4e-13 Score=137.02 Aligned_cols=130 Identities=22% Similarity=0.200 Sum_probs=86.6
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhcCc--------------
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------------------SHIGS-------------- 583 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------------------aq~g~-------------- 583 (792)
.-...||++|+.. |++++|+|||||||||+++.|.+..-. ++.|.
T Consensus 16 Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lT 95 (250)
T COG0411 16 GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLT 95 (250)
T ss_pred CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCc
Confidence 3467899999998 999999999999999999988543211 11110
Q ss_pred -------------------cccCC---ce-----------eeeccc-ccchhhccchhHHHHHHHHHHHHhCCCCeEEEE
Q 043119 584 -------------------FVPAD---AA-----------TVGLTD-SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLL 629 (792)
Q Consensus 584 -------------------~vpa~---~~-----------~~~~~~-~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvll 629 (792)
..|.. .. .+++.+ .+.....+|+...-..+++. +.+++|.|++|
T Consensus 96 VlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIAr--ALa~~P~lLLL 173 (250)
T COG0411 96 VLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIAR--ALATQPKLLLL 173 (250)
T ss_pred HHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHH--HHhcCCCEEEe
Confidence 00000 00 011111 11222234433333334444 44899999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 630 DEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 630 DE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|||.+|.++.+...++ .++..+.+.. +.+++++-|++.++.
T Consensus 174 DEPaAGln~~e~~~l~-~~i~~i~~~~-g~tillIEHdM~~Vm 214 (250)
T COG0411 174 DEPAAGLNPEETEELA-ELIRELRDRG-GVTILLIEHDMKLVM 214 (250)
T ss_pred cCccCCCCHHHHHHHH-HHHHHHHhcC-CcEEEEEEeccHHHh
Confidence 9999999999999996 5777887643 689999999999975
No 85
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.47 E-value=3.1e-13 Score=138.09 Aligned_cols=129 Identities=16% Similarity=0.143 Sum_probs=85.0
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH----------------------hhcCccccCCceee---ec
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL----------------------SHIGSFVPADAATV---GL 594 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l----------------------aq~g~~vpa~~~~~---~~ 594 (792)
.+.++++|+.. |++++|+||||||||||||+++++.-. .+.-.|+|.+...+ .+
T Consensus 14 ~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 93 (213)
T cd03262 14 HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTV 93 (213)
T ss_pred EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcH
Confidence 46678888887 999999999999999999999876421 01112344332111 00
Q ss_pred cc-------------c-----------------cchhhccchhHHH-HHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHH
Q 043119 595 TD-------------S-----------------KHMTAEQSSFMID-LHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIG 643 (792)
Q Consensus 595 ~~-------------~-----------------~~~~~~~s~f~~e-~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~ 643 (792)
.+ . ........+++.+ .++++.+...+.+|+++|+|||++|.|+.....
T Consensus 94 ~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~ 173 (213)
T cd03262 94 LENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGE 173 (213)
T ss_pred HHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence 00 0 0000111233333 344555555678999999999999999988777
Q ss_pred HHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 644 LLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 644 l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+. .++..+.+. +.++|++||+.+.+.
T Consensus 174 l~-~~l~~~~~~--~~tvi~~sh~~~~~~ 199 (213)
T cd03262 174 VL-DVMKDLAEE--GMTMVVVTHEMGFAR 199 (213)
T ss_pred HH-HHHHHHHHc--CCEEEEEeCCHHHHH
Confidence 74 567777653 578999999998764
No 86
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.47 E-value=2.2e-13 Score=133.23 Aligned_cols=123 Identities=18% Similarity=0.180 Sum_probs=80.9
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC----------ccccCCceeeeccc-ccchhh-ccchh
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIG----------SFVPADAATVGLTD-SKHMTA-EQSSF 607 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g----------~~vpa~~~~~~~~~-~~~~~~-~~s~f 607 (792)
.+.++++|+.. |++++|+||||||||||+|.+++..-. ..| .|+|.+.... ... .+.+.. ....+
T Consensus 15 ~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~i~~~~q~~~~~-~~tv~~nl~~~~~~~L 92 (166)
T cd03223 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEGEDLLFLPQRPYLP-LGTLREQLIYPWDDVL 92 (166)
T ss_pred eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCCceEEEECCCCccc-cccHHHHhhccCCCCC
Confidence 45678889887 999999999999999999999876432 122 2344332110 000 111110 12223
Q ss_pred HH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhh
Q 043119 608 MI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELL 671 (792)
Q Consensus 608 ~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~ 671 (792)
+. |.++++.+...+.+|+++|+|||++|.|+.....+.. ++..+ +.++|++||+.++.
T Consensus 93 S~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~-~l~~~-----~~tiiivsh~~~~~ 151 (166)
T cd03223 93 SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ-LLKEL-----GITVISVGHRPSLW 151 (166)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHH-HHHHh-----CCEEEEEeCChhHH
Confidence 33 3444555555579999999999999999988777743 44433 36899999998764
No 87
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.47 E-value=3e-13 Score=140.14 Aligned_cols=130 Identities=16% Similarity=0.113 Sum_probs=86.3
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh-----------------------hcCccccCCceee---e
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS-----------------------HIGSFVPADAATV---G 593 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la-----------------------q~g~~vpa~~~~~---~ 593 (792)
.+.++++|+.. |++++|+||||||||||+|+++++.... ..-.|+|.....+ .
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRT 98 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCc
Confidence 46678889888 9999999999999999999998764210 0112344332111 0
Q ss_pred ccc-----------------------------ccchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHH
Q 043119 594 LTD-----------------------------SKHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIG 643 (792)
Q Consensus 594 ~~~-----------------------------~~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~ 643 (792)
+.+ ........+.++. |.++++.+...+.+|+++|||||++|+|+.....
T Consensus 99 ~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~ 178 (233)
T cd03258 99 VFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQS 178 (233)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHH
Confidence 000 0000011233444 4455555666689999999999999999988887
Q ss_pred HHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 644 LLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 644 l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+. .++..+.+.. +.++|++||+.+.+.
T Consensus 179 l~-~~l~~~~~~~-~~tvii~sH~~~~~~ 205 (233)
T cd03258 179 IL-ALLRDINREL-GLTIVLITHEMEVVK 205 (233)
T ss_pred HH-HHHHHHHHHc-CCEEEEEeCCHHHHH
Confidence 75 5666665431 579999999998764
No 88
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.47 E-value=3.4e-13 Score=138.59 Aligned_cols=130 Identities=17% Similarity=0.093 Sum_probs=85.8
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH-----------------------h-hcCccccCCceee---
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL-----------------------S-HIGSFVPADAATV--- 592 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l-----------------------a-q~g~~vpa~~~~~--- 592 (792)
.+.++++|+.. |++++|+||||||||||||+++++.-. . +.-.|+|.....+
T Consensus 19 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (221)
T TIGR02211 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDF 98 (221)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCC
Confidence 46778889888 999999999999999999999865311 0 1112444332111
Q ss_pred eccc-----------------------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHH
Q 043119 593 GLTD-----------------------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGI 642 (792)
Q Consensus 593 ~~~~-----------------------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~ 642 (792)
++.+ ........++++.++ ++++.+...+.+|+++|||||++|.|+....
T Consensus 99 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~ 178 (221)
T TIGR02211 99 TALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAK 178 (221)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHH
Confidence 0000 000011123344444 4555555567899999999999999998888
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 643 GLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 643 ~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+. .++..+.+.. +.++|++||+++.+.
T Consensus 179 ~l~-~~l~~~~~~~-~~tii~~tH~~~~~~ 206 (221)
T TIGR02211 179 IIF-DLMLELNREL-NTSFLVVTHDLELAK 206 (221)
T ss_pred HHH-HHHHHHHHhc-CCEEEEEeCCHHHHh
Confidence 875 5666665432 579999999998764
No 89
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.46 E-value=4.1e-13 Score=135.77 Aligned_cols=128 Identities=14% Similarity=0.098 Sum_probs=84.1
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hcCccccCCceee---ecc
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------------HIGSFVPADAATV---GLT 595 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------------q~g~~vpa~~~~~---~~~ 595 (792)
..+.++++|+.. |++++|+||||+|||||+|.+++..... ++ .|+|...... .+.
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i-~~~~q~~~~~~~~tv~ 91 (201)
T cd03231 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGL-LYLGHAPGIKTTLSVL 91 (201)
T ss_pred ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhhe-EEeccccccCCCcCHH
Confidence 456789999987 9999999999999999999998653110 11 1333221110 000
Q ss_pred c-----------------------ccchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 043119 596 D-----------------------SKHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINY 651 (792)
Q Consensus 596 ~-----------------------~~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~ 651 (792)
+ ..........++. |.++++.+...+.+|+++|||||++|.|+.....+. .++..
T Consensus 92 e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~ 170 (201)
T cd03231 92 ENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFA-EAMAG 170 (201)
T ss_pred HHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHH
Confidence 0 0000111223443 445555555667899999999999999998888885 46666
Q ss_pred HHhCCCCcEEEEEccChhhh
Q 043119 652 FVTCDVPPKVLVCTHLTELL 671 (792)
Q Consensus 652 l~~~~~~~~~l~~TH~~~l~ 671 (792)
+.+. ++++|++||+.+..
T Consensus 171 ~~~~--g~tiii~sH~~~~~ 188 (201)
T cd03231 171 HCAR--GGMVVLTTHQDLGL 188 (201)
T ss_pred HHhC--CCEEEEEecCchhh
Confidence 6553 57899999987654
No 90
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.46 E-value=2.4e-13 Score=148.84 Aligned_cols=145 Identities=14% Similarity=0.073 Sum_probs=93.5
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh-cC------------------
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH-IG------------------ 582 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq-~g------------------ 582 (792)
.+.+++..+-+ .+..+.++++|+.. |++++|+|||||||||+||+++++..... .|
T Consensus 5 ~l~~~~l~~~~----~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ 80 (362)
T TIGR03258 5 GIRIDHLRVAY----GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80 (362)
T ss_pred EEEEEEEEEEE----CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCC
Confidence 35566655544 23457889999988 99999999999999999999997643221 01
Q ss_pred -ccccCCceeeeccc-cc-------------------------------chhhccchhH-HHHHHHHHHHHhCCCCeEEE
Q 043119 583 -SFVPADAATVGLTD-SK-------------------------------HMTAEQSSFM-IDLHQVGMMLRQATSQSLCL 628 (792)
Q Consensus 583 -~~vpa~~~~~~~~~-~~-------------------------------~~~~~~s~f~-~e~~~~~~~l~~~~~~slvl 628 (792)
.+|+...+-++-.. .+ ........++ ++.++++.+...+.+|+++|
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llL 160 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLL 160 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 12222211110000 00 0000112223 24455555556689999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 629 LDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 629 lDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
||||++|+|+.....+. ..+..+.+...+.++|++||+.+.+.
T Consensus 161 LDEP~s~LD~~~r~~l~-~~l~~l~~~~~g~til~vTHd~~ea~ 203 (362)
T TIGR03258 161 LDEPLSALDANIRANMR-EEIAALHEELPELTILCVTHDQDDAL 203 (362)
T ss_pred EcCccccCCHHHHHHHH-HHHHHHHHhCCCCEEEEEeCCHHHHH
Confidence 99999999999988885 46666665311579999999998764
No 91
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.46 E-value=3.7e-13 Score=139.75 Aligned_cols=131 Identities=16% Similarity=0.150 Sum_probs=86.9
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh-------------------hcCccccCCcee---eeccc
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS-------------------HIGSFVPADAAT---VGLTD 596 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la-------------------q~g~~vpa~~~~---~~~~~ 596 (792)
..+.++++|+.. |++++|+||||||||||+|.++++.-.. +.-.|+|..... ..+.+
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 93 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQ 93 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHH
Confidence 456788999988 9999999999999999999998764210 001233333211 00000
Q ss_pred --------c---------------------cchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHH
Q 043119 597 --------S---------------------KHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLG 646 (792)
Q Consensus 597 --------~---------------------~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~ 646 (792)
. .......+.++. |.++++.+...+.+|+++|+|||++|.|+.....+.
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~- 172 (236)
T TIGR03864 94 NLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIV- 172 (236)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHH-
Confidence 0 000011223333 445556666668999999999999999998888885
Q ss_pred HHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 647 GTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 647 ~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.++..+.+. .+.++|++||+.+.+.
T Consensus 173 ~~l~~~~~~-~~~tiii~sH~~~~~~ 197 (236)
T TIGR03864 173 AHVRALCRD-QGLSVLWATHLVDEIE 197 (236)
T ss_pred HHHHHHHHh-CCCEEEEEecChhhHh
Confidence 466666642 1578999999998864
No 92
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.46 E-value=2.6e-13 Score=141.86 Aligned_cols=131 Identities=20% Similarity=0.207 Sum_probs=87.1
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh---------cCccccCCceeee-----ccc--------
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH---------IGSFVPADAATVG-----LTD-------- 596 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq---------~g~~vpa~~~~~~-----~~~-------- 596 (792)
..+.++++|+.. |++++|+||||||||||+|+++++.-... .-.|+|......+ +.+
T Consensus 17 ~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~ 96 (251)
T PRK09544 17 RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGT 96 (251)
T ss_pred ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccc
Confidence 456778999987 99999999999999999999987642110 0124444321100 000
Q ss_pred --------------ccchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEE
Q 043119 597 --------------SKHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKV 661 (792)
Q Consensus 597 --------------~~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~ 661 (792)
.+........++. |.++++.+...+.+|+++|+|||++|+|+.....+. .++..+.+.. +.++
T Consensus 97 ~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~-g~ti 174 (251)
T PRK09544 97 KKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALY-DLIDQLRREL-DCAV 174 (251)
T ss_pred cHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHhc-CCEE
Confidence 0001111233443 445555555567899999999999999998888875 4666665431 5789
Q ss_pred EEEccChhhhh
Q 043119 662 LVCTHLTELLN 672 (792)
Q Consensus 662 l~~TH~~~l~~ 672 (792)
|++||+.+.+.
T Consensus 175 iivsH~~~~i~ 185 (251)
T PRK09544 175 LMVSHDLHLVM 185 (251)
T ss_pred EEEecCHHHHH
Confidence 99999999865
No 93
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.46 E-value=3.2e-13 Score=138.03 Aligned_cols=129 Identities=16% Similarity=0.176 Sum_probs=85.2
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh-----------------------hcCccccCCceeee---
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS-----------------------HIGSFVPADAATVG--- 593 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la-----------------------q~g~~vpa~~~~~~--- 593 (792)
.+.++++|+.. |++++|+||||||||||+|.+++..-.. +.-.|+|.+...++
T Consensus 15 ~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 94 (214)
T cd03292 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRN 94 (214)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCc
Confidence 46778999987 9999999999999999999998763110 01123333321110
Q ss_pred ccc----c-------------------------cchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHH
Q 043119 594 LTD----S-------------------------KHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIG 643 (792)
Q Consensus 594 ~~~----~-------------------------~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~ 643 (792)
+.+ . ........+++. |.++++.+...+.+|+++|+|||++|.|+.....
T Consensus 95 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 174 (214)
T cd03292 95 VYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWE 174 (214)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHH
Confidence 000 0 000001123333 4445555555679999999999999999988887
Q ss_pred HHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 644 LLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 644 l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+. .+++.+.+. +.++|++||+.+.+.
T Consensus 175 ~~-~~l~~~~~~--~~tiiivtH~~~~~~ 200 (214)
T cd03292 175 IM-NLLKKINKA--GTTVVVATHAKELVD 200 (214)
T ss_pred HH-HHHHHHHHc--CCEEEEEeCCHHHHH
Confidence 75 466666553 579999999998765
No 94
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.46 E-value=4.2e-13 Score=138.21 Aligned_cols=144 Identities=22% Similarity=0.249 Sum_probs=93.4
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhc
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------------------SHI 581 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------------------aq~ 581 (792)
.+.+++....+ .+..+.++++|+.. |++++|+||||||||||+|.++++... .+.
T Consensus 7 ~i~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 7 LLQLQNVGYLA----GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred eEEEeccEEee----CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhc
Confidence 35666665444 23457889999988 999999999999999999999876421 011
Q ss_pred CccccCCceee--eccc---------------------------cc-chhhccchhHH-HHHHHHHHHHhCCCCeEEEEe
Q 043119 582 GSFVPADAATV--GLTD---------------------------SK-HMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLD 630 (792)
Q Consensus 582 g~~vpa~~~~~--~~~~---------------------------~~-~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllD 630 (792)
-.|+|.....+ ++.+ .. ......+.++. +.++++.+...+.+|+++|+|
T Consensus 83 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 162 (225)
T PRK10247 83 VSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLD 162 (225)
T ss_pred cEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 12344332110 0000 00 00111223333 445566666668999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 631 EFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 631 E~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
||++|.|+.....+. .+++.+.+.. +.++|++||+.+.+.
T Consensus 163 EPt~~LD~~~~~~l~-~~l~~~~~~~-~~tvii~sh~~~~~~ 202 (225)
T PRK10247 163 EITSALDESNKHNVN-EIIHRYVREQ-NIAVLWVTHDKDEIN 202 (225)
T ss_pred CCcccCCHHHHHHHH-HHHHHHHHhc-CCEEEEEECChHHHH
Confidence 999999998877774 4566665432 578999999998864
No 95
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.46 E-value=3.2e-13 Score=137.17 Aligned_cols=128 Identities=16% Similarity=0.216 Sum_probs=84.3
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC-------------------------ccccCCceee--
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIG-------------------------SFVPADAATV-- 592 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g-------------------------~~vpa~~~~~-- 592 (792)
.+.++++|+.. |++++|+||||||||||+|.++++... ..| .|+|.....+
T Consensus 12 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (206)
T TIGR03608 12 IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF-DSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIEN 90 (206)
T ss_pred EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccC
Confidence 46678999887 999999999999999999999876421 111 1222221100
Q ss_pred -eccc-----------------------------ccchhhccchhH-HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHH
Q 043119 593 -GLTD-----------------------------SKHMTAEQSSFM-IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDG 641 (792)
Q Consensus 593 -~~~~-----------------------------~~~~~~~~s~f~-~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~ 641 (792)
.+.+ ..........++ +|.++++.+...+.+|+++|+|||++|.|+...
T Consensus 91 ~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~ 170 (206)
T TIGR03608 91 ETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNR 170 (206)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHH
Confidence 0000 000001112233 344555555566799999999999999999888
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 642 IGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 642 ~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+. .+++.+.+. +.++|++||+.++.+
T Consensus 171 ~~l~-~~l~~~~~~--~~tii~~sh~~~~~~ 198 (206)
T TIGR03608 171 DEVL-DLLLELNDE--GKTIIIVTHDPEVAK 198 (206)
T ss_pred HHHH-HHHHHHHhc--CCEEEEEeCCHHHHh
Confidence 8774 566666653 579999999998653
No 96
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.46 E-value=4.4e-13 Score=136.21 Aligned_cols=129 Identities=15% Similarity=0.134 Sum_probs=86.5
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh------------------hcCccccCCceee---eccc-
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS------------------HIGSFVPADAATV---GLTD- 596 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la------------------q~g~~vpa~~~~~---~~~~- 596 (792)
..+.++++|+.. |++++|+||||||||||++.++++.... ++ .|+|...... .+.+
T Consensus 15 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~tv~~~ 93 (207)
T PRK13539 15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEAC-HYLGHRNAMKPALTVAEN 93 (207)
T ss_pred eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhc-EEecCCCcCCCCCcHHHH
Confidence 457789999987 9999999999999999999998764211 11 2333221100 0000
Q ss_pred ----------cc--------------chhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 043119 597 ----------SK--------------HMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINY 651 (792)
Q Consensus 597 ----------~~--------------~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~ 651 (792)
.+ ........++. +.++++.+...+.+|+++|+|||++|.|+.....+. .++..
T Consensus 94 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~ 172 (207)
T PRK13539 94 LEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFA-ELIRA 172 (207)
T ss_pred HHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHH
Confidence 00 00011123333 445555556667899999999999999998888884 56666
Q ss_pred HHhCCCCcEEEEEccChhhhh
Q 043119 652 FVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 652 l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+.+. +.++|++||+.+.+.
T Consensus 173 ~~~~--~~tiii~sH~~~~~~ 191 (207)
T PRK13539 173 HLAQ--GGIVIAATHIPLGLP 191 (207)
T ss_pred HHHC--CCEEEEEeCCchhhc
Confidence 6554 579999999998765
No 97
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.46 E-value=5.2e-13 Score=131.83 Aligned_cols=129 Identities=16% Similarity=0.191 Sum_probs=90.7
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhcC-ccccCCceeeeccc-
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------------------SHIG-SFVPADAATVGLTD- 596 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------------------aq~g-~~vpa~~~~~~~~~- 596 (792)
.-+..+++|+.+ |+++.|+||||+||||+||+|++++-. +..| +|||..+..++-..
T Consensus 16 ~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTV 95 (237)
T COG0410 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTV 95 (237)
T ss_pred eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcH
Confidence 456679999988 999999999999999999999877521 2233 36776543222111
Q ss_pred ----------------------------cc------chhhccchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHH
Q 043119 597 ----------------------------SK------HMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGI 642 (792)
Q Consensus 597 ----------------------------~~------~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~ 642 (792)
++ .....+|....+|..++++| +++|.|++||||+-|+.|.-..
T Consensus 96 eENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRAL--m~~PklLLLDEPs~GLaP~iv~ 173 (237)
T COG0410 96 EENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARAL--MSRPKLLLLDEPSEGLAPKIVE 173 (237)
T ss_pred HHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHH--hcCCCEEEecCCccCcCHHHHH
Confidence 00 01112444444444444444 8999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 643 GLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 643 ~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.|. .+++.+.+.. +.+++++-++...+-
T Consensus 174 ~I~-~~i~~l~~~~-g~tIlLVEQn~~~Al 201 (237)
T COG0410 174 EIF-EAIKELRKEG-GMTILLVEQNARFAL 201 (237)
T ss_pred HHH-HHHHHHHHcC-CcEEEEEeccHHHHH
Confidence 996 5777887653 579999999988764
No 98
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.46 E-value=3.1e-13 Score=139.13 Aligned_cols=129 Identities=17% Similarity=0.167 Sum_probs=85.7
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC-----------------ccccCCceee---eccc--
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIG-----------------SFVPADAATV---GLTD-- 596 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g-----------------~~vpa~~~~~---~~~~-- 596 (792)
..+.++++|+.. |++++|+|||||||||||+.+++... .+-| .|+|.....+ .+.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~ 91 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR-PTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENL 91 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHH
Confidence 346778888887 99999999999999999999987642 1122 1233321110 0000
Q ss_pred -----------------------ccchhhccchhH-HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 043119 597 -----------------------SKHMTAEQSSFM-IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYF 652 (792)
Q Consensus 597 -----------------------~~~~~~~~s~f~-~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l 652 (792)
..........++ +|.++++.+...+.+|+++|+|||++|.|+.....+. .++..+
T Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~-~~L~~~ 170 (223)
T TIGR03740 92 KVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELR-ELIRSF 170 (223)
T ss_pred HHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHH-HHHHHH
Confidence 000001112233 3445555555667899999999999999998888874 566666
Q ss_pred HhCCCCcEEEEEccChhhhh
Q 043119 653 VTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 653 ~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+. +.++|++||+.+.+.
T Consensus 171 ~~~--~~tiii~sH~~~~~~ 188 (223)
T TIGR03740 171 PEQ--GITVILSSHILSEVQ 188 (223)
T ss_pred HHC--CCEEEEEcCCHHHHH
Confidence 653 578999999998864
No 99
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.46 E-value=5.7e-13 Score=135.13 Aligned_cols=130 Identities=14% Similarity=0.108 Sum_probs=86.0
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hcCccccCCceee---ecc
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------------HIGSFVPADAATV---GLT 595 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------------q~g~~vpa~~~~~---~~~ 595 (792)
..+.++++|+.. |++++|+||||||||||+|.+++..-.. ++| |+|...... .+.
T Consensus 14 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~tv~ 92 (204)
T PRK13538 14 RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL-YLGHQPGIKTELTAL 92 (204)
T ss_pred EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheE-EeCCccccCcCCcHH
Confidence 346778999988 9999999999999999999998653210 111 222221100 000
Q ss_pred c--------------------------ccchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHH
Q 043119 596 D--------------------------SKHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGT 648 (792)
Q Consensus 596 ~--------------------------~~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~ 648 (792)
+ ........+.++. |.++++.+...+.+|+++|+|||++|.|+.....+. .+
T Consensus 93 e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~ 171 (204)
T PRK13538 93 ENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLE-AL 171 (204)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HH
Confidence 0 0000111233333 344555555568999999999999999998888885 56
Q ss_pred HHHHHhCCCCcEEEEEccChhhhhc
Q 043119 649 INYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 649 ~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
++.+.+. +.++|++||+.+..+.
T Consensus 172 l~~~~~~--~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 172 LAQHAEQ--GGMVILTTHQDLPVAS 194 (204)
T ss_pred HHHHHHC--CCEEEEEecChhhhcc
Confidence 6666553 5699999999988753
No 100
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.46 E-value=3e-13 Score=140.60 Aligned_cols=142 Identities=12% Similarity=0.065 Sum_probs=90.5
Q ss_pred EEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH---------------------hhc
Q 043119 524 LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL---------------------SHI 581 (792)
Q Consensus 524 l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l---------------------aq~ 581 (792)
+.+++....+ .+..+.++++|+.. |++++|+||||||||||+|+++++.-. .+.
T Consensus 6 l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 6 LSFDKVSAHY----GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEeEEEee----CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4455544332 23457789999988 999999999999999999999865311 011
Q ss_pred CccccCCceeee---ccc----------cc-----------ch-------hhccchhH-HHHHHHHHHHHhCCCCeEEEE
Q 043119 582 GSFVPADAATVG---LTD----------SK-----------HM-------TAEQSSFM-IDLHQVGMMLRQATSQSLCLL 629 (792)
Q Consensus 582 g~~vpa~~~~~~---~~~----------~~-----------~~-------~~~~s~f~-~e~~~~~~~l~~~~~~slvll 629 (792)
-.|+|.....++ +.+ .+ .+ ....++++ +|.++++.+...+.+|+++|+
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illl 161 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLL 161 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 123343321110 000 00 00 00112233 244555555566789999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 630 DEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 630 DE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|||++|.|+.....+ ..+++.+.+. +.++|++||+.+.+.
T Consensus 162 DEPt~~LD~~~~~~l-~~~l~~~~~~--~~tiii~sH~~~~~~ 201 (237)
T PRK11614 162 DEPSLGLAPIIIQQI-FDTIEQLREQ--GMTIFLVEQNANQAL 201 (237)
T ss_pred cCccccCCHHHHHHH-HHHHHHHHHC--CCEEEEEeCcHHHHH
Confidence 999999999877777 4566777654 579999999988654
No 101
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.45 E-value=4.6e-13 Score=127.46 Aligned_cols=127 Identities=19% Similarity=0.181 Sum_probs=88.5
Q ss_pred eccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh-------------cCccccCCceeeeccc-----------
Q 043119 542 IPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH-------------IGSFVPADAATVGLTD----------- 596 (792)
Q Consensus 542 v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq-------------~g~~vpa~~~~~~~~~----------- 596 (792)
..+|++|+.+ |+++-||||.|||||||||.|....-... -+.-+|--+-.+|++-
T Consensus 17 aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tv 96 (223)
T COG2884 17 ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTV 96 (223)
T ss_pred hhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchH
Confidence 4568999988 99999999999999999999876542111 0111121111222211
Q ss_pred ----------------------------------ccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHH
Q 043119 597 ----------------------------------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGI 642 (792)
Q Consensus 597 ----------------------------------~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~ 642 (792)
.+.+...+| .+|.++++.+-+-.+.|.++|-|||+-+.||.-+.
T Consensus 97 yeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LS--GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~ 174 (223)
T COG2884 97 YENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLS--GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSW 174 (223)
T ss_pred hhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccC--chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHH
Confidence 111112233 24666666666668999999999999999999888
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 643 GLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 643 ~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
.|. .+++.+... |.||++|||+.++.+.
T Consensus 175 ~im-~lfeeinr~--GtTVl~ATHd~~lv~~ 202 (223)
T COG2884 175 EIM-RLFEEINRL--GTTVLMATHDLELVNR 202 (223)
T ss_pred HHH-HHHHHHhhc--CcEEEEEeccHHHHHh
Confidence 885 477777765 7899999999999874
No 102
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.45 E-value=2.4e-13 Score=138.93 Aligned_cols=129 Identities=19% Similarity=0.186 Sum_probs=85.8
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH---------------hhcCccccCCcee-----eeccc---
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL---------------SHIGSFVPADAAT-----VGLTD--- 596 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l---------------aq~g~~vpa~~~~-----~~~~~--- 596 (792)
.+.++++|+.. |++++|+||||||||||+|.+++.... .+.-.|+|..... ..+.+
T Consensus 13 ~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~ 92 (213)
T cd03235 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVL 92 (213)
T ss_pred EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHH
Confidence 45678888887 999999999999999999999876321 0111245543211 00000
Q ss_pred ---c---------------------------cchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHH
Q 043119 597 ---S---------------------------KHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLL 645 (792)
Q Consensus 597 ---~---------------------------~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~ 645 (792)
. .......+.++.++ ++++.+...+.+|+++|+|||++|+|+.....+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~ 172 (213)
T cd03235 93 MGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIY 172 (213)
T ss_pred hccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 0 00011123444444 4455555567899999999999999998888885
Q ss_pred HHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 646 GGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 646 ~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
. ++..+.+. +.++|++||+.+.+.
T Consensus 173 ~-~l~~~~~~--~~tvi~~sH~~~~~~ 196 (213)
T cd03235 173 E-LLRELRRE--GMTILVVTHDLGLVL 196 (213)
T ss_pred H-HHHHHHhc--CCEEEEEeCCHHHHH
Confidence 4 56666553 579999999998764
No 103
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.45 E-value=4.1e-13 Score=139.37 Aligned_cols=132 Identities=13% Similarity=0.120 Sum_probs=86.4
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh-------------------hcCccccCCceee----ec
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS-------------------HIGSFVPADAATV----GL 594 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la-------------------q~g~~vpa~~~~~----~~ 594 (792)
...+.++++|+.. |++++|+||||||||||||+++++.... +...|+|.....+ .+
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcH
Confidence 3457889999988 9999999999999999999998764210 0112343221110 00
Q ss_pred cc------------cc-----------------chhhccchhHHH-HHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHH
Q 043119 595 TD------------SK-----------------HMTAEQSSFMID-LHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGL 644 (792)
Q Consensus 595 ~~------------~~-----------------~~~~~~s~f~~e-~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l 644 (792)
.+ .. ........++.+ .+++..+...+.+|+++|+|||++|+|+.....+
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l 192 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENI 192 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 00 00 000011233333 3445555556789999999999999999888888
Q ss_pred HHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 645 LGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 645 ~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
. .++..+.+.. +.++|++||+.+.+.
T Consensus 193 ~-~~l~~~~~~~-~~tiiivsH~~~~~~ 218 (236)
T cd03267 193 R-NFLKEYNRER-GTTVLLTSHYMKDIE 218 (236)
T ss_pred H-HHHHHHHhcC-CCEEEEEecCHHHHH
Confidence 5 4666665532 579999999998765
No 104
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=4.9e-13 Score=136.39 Aligned_cols=127 Identities=17% Similarity=0.220 Sum_probs=84.1
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH-------------------hhcCccccCCceee---eccc-
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL-------------------SHIGSFVPADAATV---GLTD- 596 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l-------------------aq~g~~vpa~~~~~---~~~~- 596 (792)
.+.++++|+.. | +++|+||||||||||+|+++++... .+.-.|+|.+...+ .+.+
T Consensus 14 ~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 92 (211)
T cd03264 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREF 92 (211)
T ss_pred EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHH
Confidence 46778888887 8 9999999999999999999875321 01112444432111 1000
Q ss_pred ----------c-c-----------------chhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHH
Q 043119 597 ----------S-K-----------------HMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGG 647 (792)
Q Consensus 597 ----------~-~-----------------~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~ 647 (792)
. . ........++. |.++++.+...+.+|+++|+|||++|.|+.....+. .
T Consensus 93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~ 171 (211)
T cd03264 93 LDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFR-N 171 (211)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-H
Confidence 0 0 00001122333 445555556668999999999999999998888774 5
Q ss_pred HHHHHHhCCCCcEEEEEccChhhhh
Q 043119 648 TINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 648 ~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+++.+.+ +.++|++||+.+.+.
T Consensus 172 ~l~~~~~---~~tii~vsH~~~~~~ 193 (211)
T cd03264 172 LLSELGE---DRIVILSTHIVEDVE 193 (211)
T ss_pred HHHHHhC---CCEEEEEcCCHHHHH
Confidence 7777664 368999999999865
No 105
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=5.2e-13 Score=139.11 Aligned_cols=130 Identities=21% Similarity=0.157 Sum_probs=86.2
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh---------------------hcCccccCCceee---ec
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS---------------------HIGSFVPADAATV---GL 594 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la---------------------q~g~~vpa~~~~~---~~ 594 (792)
..+.++++|+.. |++++|+||||||||||+|+++++.... +.-.|+|.....+ ++
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSV 95 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcH
Confidence 457889999988 9999999999999999999998764210 0012344332110 00
Q ss_pred cc----c--------------------------cchhhccchhHHH-HHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHH
Q 043119 595 TD----S--------------------------KHMTAEQSSFMID-LHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIG 643 (792)
Q Consensus 595 ~~----~--------------------------~~~~~~~s~f~~e-~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~ 643 (792)
.+ . .........++.+ .++++.+...+.+|+++|+|||++|.|+.....
T Consensus 96 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 175 (241)
T PRK10895 96 YDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVID 175 (241)
T ss_pred HHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 00 0 0000111233333 344555555678999999999999999988877
Q ss_pred HHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 644 LLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 644 l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+. .+++.+.+. +.++|++||+.+.+.
T Consensus 176 l~-~~l~~~~~~--g~tiii~sH~~~~~~ 201 (241)
T PRK10895 176 IK-RIIEHLRDS--GLGVLITDHNVRETL 201 (241)
T ss_pred HH-HHHHHHHhc--CCEEEEEEcCHHHHH
Confidence 74 567777654 579999999997654
No 106
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=3.6e-13 Score=140.13 Aligned_cols=130 Identities=18% Similarity=0.099 Sum_probs=85.5
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC-------------------ccccCCceee---eccc
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIG-------------------SFVPADAATV---GLTD 596 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g-------------------~~vpa~~~~~---~~~~ 596 (792)
..+.++++|+.. |++++|+||||||||||+|+++++... .-| .|+|.....+ .+.+
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 93 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP-DSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFD 93 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCcCCccccceEEEecCCcccCCCCHHH
Confidence 346778999988 999999999999999999999876421 111 1333321100 0000
Q ss_pred --------c------c-------------------chhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHH
Q 043119 597 --------S------K-------------------HMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGI 642 (792)
Q Consensus 597 --------~------~-------------------~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~ 642 (792)
. . ......+.++. |.++++.+...+.+|+++|+|||++|.|+....
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~ 173 (239)
T cd03296 94 NVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRK 173 (239)
T ss_pred HHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 0 0 00001123333 344455555567899999999999999998888
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 643 GLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 643 ~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+. .++..+.+.. +.++|++||+.+.+.
T Consensus 174 ~l~-~~l~~~~~~~-~~tvii~sH~~~~~~ 201 (239)
T cd03296 174 ELR-RWLRRLHDEL-HVTTVFVTHDQEEAL 201 (239)
T ss_pred HHH-HHHHHHHHHc-CCEEEEEeCCHHHHH
Confidence 774 5666766532 579999999998754
No 107
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.45 E-value=4.1e-13 Score=141.27 Aligned_cols=130 Identities=16% Similarity=0.136 Sum_probs=83.9
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hcCccccCCcee---eecc
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------------HIGSFVPADAAT---VGLT 595 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------------q~g~~vpa~~~~---~~~~ 595 (792)
..+.++++|+.. |++++|+||||||||||||.++++.-.. ..-.|+|..... ..+.
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 94 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVE 94 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHH
Confidence 457789999988 9999999999999999999998764210 001234433211 0000
Q ss_pred c--------c----c-----------------chhhccchhHHHH-HHHHHHHHhC------CCCeEEEEeCCCCCCCHH
Q 043119 596 D--------S----K-----------------HMTAEQSSFMIDL-HQVGMMLRQA------TSQSLCLLDEFGKGTLTE 639 (792)
Q Consensus 596 ~--------~----~-----------------~~~~~~s~f~~e~-~~~~~~l~~~------~~~slvllDE~~~gt~~~ 639 (792)
+ . + ........++.++ ++++.+...+ .+|+++|+|||++|+|+.
T Consensus 95 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~ 174 (258)
T PRK13548 95 EVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLA 174 (258)
T ss_pred HHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHH
Confidence 0 0 0 0000112333333 4444444445 489999999999999998
Q ss_pred HHHHHHHHHHHHHH-hCCCCcEEEEEccChhhhh
Q 043119 640 DGIGLLGGTINYFV-TCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 640 ~~~~l~~~~~~~l~-~~~~~~~~l~~TH~~~l~~ 672 (792)
....+. .++..+. +. +.++|++||+++.+.
T Consensus 175 ~~~~l~-~~l~~~~~~~--~~tiii~sH~~~~~~ 205 (258)
T PRK13548 175 HQHHVL-RLARQLAHER--GLAVIVVLHDLNLAA 205 (258)
T ss_pred HHHHHH-HHHHHHHHhc--CCEEEEEECCHHHHH
Confidence 888885 4666665 43 579999999998765
No 108
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.44 E-value=5.1e-13 Score=139.08 Aligned_cols=130 Identities=17% Similarity=0.173 Sum_probs=86.1
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh----------------------hcCccccCCceee---e
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS----------------------HIGSFVPADAATV---G 593 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la----------------------q~g~~vpa~~~~~---~ 593 (792)
..+.++++|+.. |++++|+||||||||||+|+++++.-.. +.-.|+|.....+ .
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 93 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLT 93 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCc
Confidence 356789999987 9999999999999999999998764210 0012333321110 0
Q ss_pred ccc----c--------------------------cchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHH
Q 043119 594 LTD----S--------------------------KHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGI 642 (792)
Q Consensus 594 ~~~----~--------------------------~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~ 642 (792)
+.+ . .......+.++. |.++++.+...+.+|+++|+|||++|.|+....
T Consensus 94 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~ 173 (240)
T PRK09493 94 ALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRH 173 (240)
T ss_pred HHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 000 0 000111233443 344455555567899999999999999998888
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 643 GLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 643 ~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+. .++..+.+. +.++|++||+.+.+.
T Consensus 174 ~l~-~~l~~~~~~--~~tiii~sH~~~~~~ 200 (240)
T PRK09493 174 EVL-KVMQDLAEE--GMTMVIVTHEIGFAE 200 (240)
T ss_pred HHH-HHHHHHHHc--CCEEEEEeCCHHHHH
Confidence 885 467666654 578999999998875
No 109
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.44 E-value=4.9e-13 Score=134.95 Aligned_cols=127 Identities=15% Similarity=0.110 Sum_probs=83.7
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhcCccccCCceee---ecc
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------------------SHIGSFVPADAATV---GLT 595 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------------------aq~g~~vpa~~~~~---~~~ 595 (792)
..+.++++|+.. |++++|+||||||||||+|.+++..-. .++ .|+|...... .+.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i-~~~~q~~~~~~~~tv~ 91 (198)
T TIGR01189 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNI-LYLGHLPGLKPELSAL 91 (198)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhhe-EEeccCcccccCCcHH
Confidence 456778999988 999999999999999999999875311 111 2344322111 011
Q ss_pred c---------c--c--------------chhhccchhH-HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHH
Q 043119 596 D---------S--K--------------HMTAEQSSFM-IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTI 649 (792)
Q Consensus 596 ~---------~--~--------------~~~~~~s~f~-~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~ 649 (792)
+ . + .......+++ +|.++++.+...+.+|+++|+|||++|.|+.....+. .++
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l 170 (198)
T TIGR01189 92 ENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLA-GLL 170 (198)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH-HHH
Confidence 1 0 0 0001122333 3445566666667899999999999999998777774 566
Q ss_pred HHHHhCCCCcEEEEEccChhh
Q 043119 650 NYFVTCDVPPKVLVCTHLTEL 670 (792)
Q Consensus 650 ~~l~~~~~~~~~l~~TH~~~l 670 (792)
..+.+. +.++|++||+..-
T Consensus 171 ~~~~~~--~~tii~~sH~~~~ 189 (198)
T TIGR01189 171 RAHLAR--GGIVLLTTHQDLG 189 (198)
T ss_pred HHHHhC--CCEEEEEEccccc
Confidence 666554 5689999998753
No 110
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.44 E-value=4.3e-13 Score=148.30 Aligned_cols=130 Identities=18% Similarity=0.205 Sum_probs=88.5
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------------------h-hcCccccCCceee---e
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------------------S-HIGSFVPADAATV---G 593 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------------------a-q~g~~vpa~~~~~---~ 593 (792)
+..+.++++|+.. |++++|+||||||||||||+++++... + ++| +||.+.... +
T Consensus 15 ~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig-~v~q~~~l~~~~t 93 (402)
T PRK09536 15 DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA-SVPQDTSLSFEFD 93 (402)
T ss_pred CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE-EEccCCCCCCCCC
Confidence 3457789999988 999999999999999999999876421 1 122 344332110 0
Q ss_pred c--------------c---c----------------ccchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHH
Q 043119 594 L--------------T---D----------------SKHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTE 639 (792)
Q Consensus 594 ~--------------~---~----------------~~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~ 639 (792)
+ + . .+........++. |.+++..+...+.+|+++|||||++|+|+.
T Consensus 94 v~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~ 173 (402)
T PRK09536 94 VRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDIN 173 (402)
T ss_pred HHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 0 0 0 0000111223333 444555555567999999999999999998
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 640 DGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 640 ~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
....+. .+++.+.+. +.++|++||+++++.
T Consensus 174 ~~~~l~-~lL~~l~~~--g~TIIivsHdl~~~~ 203 (402)
T PRK09536 174 HQVRTL-ELVRRLVDD--GKTAVAAIHDLDLAA 203 (402)
T ss_pred HHHHHH-HHHHHHHhc--CCEEEEEECCHHHHH
Confidence 888885 577777754 579999999999875
No 111
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.44 E-value=5.3e-13 Score=145.91 Aligned_cols=143 Identities=19% Similarity=0.074 Sum_probs=93.2
Q ss_pred EEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh------------------cCcc
Q 043119 524 LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH------------------IGSF 584 (792)
Q Consensus 524 l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq------------------~g~~ 584 (792)
|.+++...-+ .+..+.++++|+.. |++++|+|||||||||+||+|+++.-... .-.+
T Consensus 5 l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~ 80 (353)
T TIGR03265 5 LSIDNIRKRF----GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGI 80 (353)
T ss_pred EEEEEEEEEe----CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 4555555443 23446788999987 99999999999999999999998752110 0123
Q ss_pred ccCCceeeeccc--------------------------------ccchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeC
Q 043119 585 VPADAATVGLTD--------------------------------SKHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDE 631 (792)
Q Consensus 585 vpa~~~~~~~~~--------------------------------~~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE 631 (792)
||...+-++-.. ..........++. |.++++.+...+.+|+++||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDE 160 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDE 160 (353)
T ss_pred EeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 333322211100 0000111223333 4455666666689999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 632 FGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 632 ~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|++|+|+.....+.. .++.+.+. .+.++|++||+.+.+.
T Consensus 161 P~s~LD~~~r~~l~~-~L~~l~~~-~~~tvi~vTHd~~ea~ 199 (353)
T TIGR03265 161 PLSALDARVREHLRT-EIRQLQRR-LGVTTIMVTHDQEEAL 199 (353)
T ss_pred CcccCCHHHHHHHHH-HHHHHHHh-cCCEEEEEcCCHHHHH
Confidence 999999999888854 55555543 2679999999998764
No 112
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.44 E-value=4.5e-13 Score=146.24 Aligned_cols=145 Identities=13% Similarity=0.044 Sum_probs=94.9
Q ss_pred CcEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhc-----C-------------
Q 043119 522 PLLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHI-----G------------- 582 (792)
Q Consensus 522 ~~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~-----g------------- 582 (792)
+.|.+++..+-+ .+..+.++++|+.. |++++|+||||||||||||+|+++.-.... |
T Consensus 5 ~~l~~~~l~~~~----~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~i 80 (351)
T PRK11432 5 NFVVLKNITKRF----GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDI 80 (351)
T ss_pred cEEEEEeEEEEE----CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 346666665544 23456789999988 999999999999999999999876532100 1
Q ss_pred ccccCCceeeec---cc-----------------------------ccchhhccchhH-HHHHHHHHHHHhCCCCeEEEE
Q 043119 583 SFVPADAATVGL---TD-----------------------------SKHMTAEQSSFM-IDLHQVGMMLRQATSQSLCLL 629 (792)
Q Consensus 583 ~~vpa~~~~~~~---~~-----------------------------~~~~~~~~s~f~-~e~~~~~~~l~~~~~~slvll 629 (792)
.+|+.+.+-++- .+ ........+.++ +|.++++.+...+.+|+++||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLL 160 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLF 160 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 123332221110 00 000001112333 344555555666899999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 630 DEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 630 DE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|||++|+|+.....+. ..+..+.+. .+.++|++||+.+.+.
T Consensus 161 DEP~s~LD~~~r~~l~-~~l~~l~~~-~g~tii~vTHd~~e~~ 201 (351)
T PRK11432 161 DEPLSNLDANLRRSMR-EKIRELQQQ-FNITSLYVTHDQSEAF 201 (351)
T ss_pred cCCcccCCHHHHHHHH-HHHHHHHHh-cCCEEEEEcCCHHHHH
Confidence 9999999999998885 466666553 2679999999998763
No 113
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.44 E-value=4.1e-13 Score=138.68 Aligned_cols=130 Identities=15% Similarity=0.074 Sum_probs=85.4
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh------------------------hcCccccCCceee---
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS------------------------HIGSFVPADAATV--- 592 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la------------------------q~g~~vpa~~~~~--- 592 (792)
.+.++++|+.. |++++|+||||||||||+|+++++.-.. +.-.|+|.....+
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~ 103 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTL 103 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCc
Confidence 36788999988 9999999999999999999998764110 0112333332110
Q ss_pred eccc-----------------------------ccchhhccchhH-HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHH
Q 043119 593 GLTD-----------------------------SKHMTAEQSSFM-IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGI 642 (792)
Q Consensus 593 ~~~~-----------------------------~~~~~~~~s~f~-~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~ 642 (792)
.+.+ .+......+.++ +|.++++.+...+.+|+++|||||++|.|+....
T Consensus 104 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 183 (228)
T PRK10584 104 NALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGD 183 (228)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 0000 000001122333 3445555555667899999999999999998887
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 643 GLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 643 ~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+. .++..+.+.. +.++|++||+.+..+
T Consensus 184 ~l~-~~l~~~~~~~-~~tii~~sH~~~~~~ 211 (228)
T PRK10584 184 KIA-DLLFSLNREH-GTTLILVTHDLQLAA 211 (228)
T ss_pred HHH-HHHHHHHHhc-CCEEEEEecCHHHHH
Confidence 774 5666665431 579999999998764
No 114
>PRK10908 cell division protein FtsE; Provisional
Probab=99.44 E-value=4e-13 Score=138.18 Aligned_cols=131 Identities=18% Similarity=0.143 Sum_probs=86.3
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh-----------------------hcCccccCCceee---
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS-----------------------HIGSFVPADAATV--- 592 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la-----------------------q~g~~vpa~~~~~--- 592 (792)
..+.++++|+.. |++++|+||||||||||+|+++++.... +.-.|+|.....+
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 94 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDR 94 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccc
Confidence 356778999988 9999999999999999999998654210 0112344332110
Q ss_pred eccc------------c-----------------cchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHH
Q 043119 593 GLTD------------S-----------------KHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGI 642 (792)
Q Consensus 593 ~~~~------------~-----------------~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~ 642 (792)
.+.+ . .......+.++.++ ++++.+...+.+|+++|+|||++|.|+....
T Consensus 95 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 174 (222)
T PRK10908 95 TVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSE 174 (222)
T ss_pred cHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHH
Confidence 0000 0 00011123344444 4455555557899999999999999998888
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 643 GLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 643 ~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
.+. .++..+.+. +.++|++||+++.+..
T Consensus 175 ~l~-~~l~~~~~~--~~tiii~sH~~~~~~~ 202 (222)
T PRK10908 175 GIL-RLFEEFNRV--GVTVLMATHDIGLISR 202 (222)
T ss_pred HHH-HHHHHHHHC--CCEEEEEeCCHHHHHH
Confidence 775 466666553 5789999999988753
No 115
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.44 E-value=8.3e-13 Score=128.05 Aligned_cols=139 Identities=15% Similarity=0.220 Sum_probs=92.4
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHH----------------------------HHhhcCc------
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIV----------------------------FLSHIGS------ 583 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~----------------------------~laq~g~------ 583 (792)
++-+..||+++.+ +.+++++||.|||||||||++-.+. +-..+|.
T Consensus 19 ~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPn 98 (253)
T COG1117 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPN 98 (253)
T ss_pred chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCC
Confidence 4566789999998 9999999999999999999885432 1122332
Q ss_pred cccCCceeeeccc---------------------------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEE
Q 043119 584 FVPADAATVGLTD---------------------------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLL 629 (792)
Q Consensus 584 ~vpa~~~~~~~~~---------------------------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvll 629 (792)
+.| .++.| .+.+...--.++++. +++..+-..|-+|+++||
T Consensus 99 PFp-----~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLm 173 (253)
T COG1117 99 PFP-----MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLM 173 (253)
T ss_pred CCC-----chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEe
Confidence 112 11111 011111111233333 444444445789999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhcCCCCCCCceeEEEEEEe
Q 043119 630 DEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVL 690 (792)
Q Consensus 630 DE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~~~~~~~~~v~~~~~~~~ 690 (792)
|||++.+||.....| ..++..|.+ .-|++++||+++-+..- .+...|+++.-+
T Consensus 174 DEPtSALDPIsT~kI-EeLi~eLk~---~yTIviVTHnmqQAaRv----SD~taFf~~G~L 226 (253)
T COG1117 174 DEPTSALDPISTLKI-EELITELKK---KYTIVIVTHNMQQAARV----SDYTAFFYLGEL 226 (253)
T ss_pred cCcccccCchhHHHH-HHHHHHHHh---ccEEEEEeCCHHHHHHH----hHhhhhhcccEE
Confidence 999999999999998 568888876 35899999999987531 234566666543
No 116
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.44 E-value=4.1e-13 Score=139.48 Aligned_cols=129 Identities=17% Similarity=0.148 Sum_probs=85.1
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hc-CccccCCceeee---cc
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------------HI-GSFVPADAATVG---LT 595 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------------q~-g~~vpa~~~~~~---~~ 595 (792)
.+.++++|+.. |++++|+||||||||||||+++++.... +. -.|+|.....++ +.
T Consensus 14 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 93 (236)
T cd03219 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVL 93 (236)
T ss_pred EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHH
Confidence 46678889887 9999999999999999999998764210 00 113333321100 00
Q ss_pred c--------c-------------------------------cchhhccchhHHH-HHHHHHHHHhCCCCeEEEEeCCCCC
Q 043119 596 D--------S-------------------------------KHMTAEQSSFMID-LHQVGMMLRQATSQSLCLLDEFGKG 635 (792)
Q Consensus 596 ~--------~-------------------------------~~~~~~~s~f~~e-~~~~~~~l~~~~~~slvllDE~~~g 635 (792)
+ . .......++++.+ .++++.+...+.+|+++|+|||++|
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 173 (236)
T cd03219 94 ENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAG 173 (236)
T ss_pred HHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 0 0 0000112233333 3445555556789999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 636 TLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 636 t~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.|+.....+. .+++.+.+. +.++|++||+.+.+.
T Consensus 174 LD~~~~~~l~-~~l~~~~~~--~~tii~vsH~~~~~~ 207 (236)
T cd03219 174 LNPEETEELA-ELIRELRER--GITVLLVEHDMDVVM 207 (236)
T ss_pred CCHHHHHHHH-HHHHHHHHC--CCEEEEEecCHHHHH
Confidence 9998887774 566666653 579999999998875
No 117
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.44 E-value=5.9e-13 Score=140.07 Aligned_cols=142 Identities=14% Similarity=0.115 Sum_probs=92.5
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC-------------------
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIG------------------- 582 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g------------------- 582 (792)
.+.+++..--+ .+..+.++++|+.. |++++|+||||||||||+|.+++.... ..|
T Consensus 5 ~l~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~ 79 (257)
T PRK10619 5 KLNVIDLHKRY----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP-SEGSIVVNGQTINLVRDKDGQL 79 (257)
T ss_pred cEEEeeeEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEccccccccccc
Confidence 45666655433 13457889999988 999999999999999999999876421 111
Q ss_pred ---------------ccccCCceee---eccc------------------------------ccch-hhccchhHHHH-H
Q 043119 583 ---------------SFVPADAATV---GLTD------------------------------SKHM-TAEQSSFMIDL-H 612 (792)
Q Consensus 583 ---------------~~vpa~~~~~---~~~~------------------------------~~~~-~~~~s~f~~e~-~ 612 (792)
.|+|....-+ .+.+ .... ....+.++.++ +
T Consensus 80 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~q 159 (257)
T PRK10619 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQ 159 (257)
T ss_pred ccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHH
Confidence 1233221100 0000 0000 11122344343 4
Q ss_pred HHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 613 QVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 613 ~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+++.+...+.+|+++|+|||++|.|+.....+. .++..+.+. +.++|++||+.+.+.
T Consensus 160 rv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~l~~~--g~tiiivsH~~~~~~ 216 (257)
T PRK10619 160 RVSIARALAMEPEVLLFDEPTSALDPELVGEVL-RIMQQLAEE--GKTMVVVTHEMGFAR 216 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhc--CCEEEEEeCCHHHHH
Confidence 444455557899999999999999998888875 566677654 679999999998875
No 118
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.44 E-value=5.5e-13 Score=141.16 Aligned_cols=131 Identities=16% Similarity=0.101 Sum_probs=85.8
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh-----------------------hcCccccCCceeee--
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS-----------------------HIGSFVPADAATVG-- 593 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la-----------------------q~g~~vpa~~~~~~-- 593 (792)
..+.++++|+.. |++++|+||||||||||||.++++.-.. +.-.|+|.....++
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 99 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDM 99 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCC
Confidence 457789999988 9999999999999999999998764210 00123333211100
Q ss_pred -ccc---------c---c------------------chhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHH
Q 043119 594 -LTD---------S---K------------------HMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDG 641 (792)
Q Consensus 594 -~~~---------~---~------------------~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~ 641 (792)
+.+ . . ......+.++.++ ++++.+...+.+|+++|||||++|.|+...
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 179 (269)
T PRK11831 100 NVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITM 179 (269)
T ss_pred CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 000 0 0 0000113344444 445555556789999999999999999888
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 642 IGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 642 ~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+. .++..+.+.. +.++|++||+++.+.
T Consensus 180 ~~l~-~~l~~~~~~~-g~tiiivsH~~~~~~ 208 (269)
T PRK11831 180 GVLV-KLISELNSAL-GVTCVVVSHDVPEVL 208 (269)
T ss_pred HHHH-HHHHHHHHhc-CcEEEEEecCHHHHH
Confidence 8775 4666665432 579999999988764
No 119
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.43 E-value=4.1e-13 Score=142.09 Aligned_cols=130 Identities=17% Similarity=0.077 Sum_probs=84.7
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh------------------------hcCccccCCceee---
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS------------------------HIGSFVPADAATV--- 592 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la------------------------q~g~~vpa~~~~~--- 592 (792)
.+.++++|+.. |++++|+||||||||||+|+++++.... ..-.|+|.....+
T Consensus 38 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 117 (269)
T cd03294 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHR 117 (269)
T ss_pred eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCC
Confidence 35678888888 9999999999999999999998764210 0011333321111
Q ss_pred eccc-----------------------------ccchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHH
Q 043119 593 GLTD-----------------------------SKHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGI 642 (792)
Q Consensus 593 ~~~~-----------------------------~~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~ 642 (792)
.+.+ ........+.++. |.++++.+...+.+|+++|||||++|.|+....
T Consensus 118 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~ 197 (269)
T cd03294 118 TVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRR 197 (269)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 0000 0000011223343 344555555667999999999999999998888
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 643 GLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 643 ~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+. .++..+.+.. +.++|++||+++.+.
T Consensus 198 ~l~-~~l~~~~~~~-g~tiii~tH~~~~~~ 225 (269)
T cd03294 198 EMQ-DELLRLQAEL-QKTIVFITHDLDEAL 225 (269)
T ss_pred HHH-HHHHHHHHhc-CCEEEEEeCCHHHHH
Confidence 775 5666665432 579999999998764
No 120
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=5.5e-13 Score=146.83 Aligned_cols=144 Identities=17% Similarity=0.095 Sum_probs=93.8
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhc-----C-------------c
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHI-----G-------------S 583 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~-----g-------------~ 583 (792)
.|.+++....+ .+..+.++++|+.. |++++|+|||||||||+||+|+++.-..+. | .
T Consensus 19 ~l~l~~v~~~~----~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 94 (377)
T PRK11607 19 LLEIRNLTKSF----DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPIN 94 (377)
T ss_pred eEEEEeEEEEE----CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 46777766654 23467889999987 999999999999999999999977532110 1 1
Q ss_pred cccCCceeeeccc-ccc-------------------------------hhhccchhH-HHHHHHHHHHHhCCCCeEEEEe
Q 043119 584 FVPADAATVGLTD-SKH-------------------------------MTAEQSSFM-IDLHQVGMMLRQATSQSLCLLD 630 (792)
Q Consensus 584 ~vpa~~~~~~~~~-~~~-------------------------------~~~~~s~f~-~e~~~~~~~l~~~~~~slvllD 630 (792)
||+.+.+-++-.. .++ .......++ +|.++++.+...+.+|+++|||
T Consensus 95 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLD 174 (377)
T PRK11607 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLD 174 (377)
T ss_pred EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 2333222111000 000 000112233 3445566566668999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 631 EFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 631 E~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
||++|+|+.....+...+.+...+. +.++|++||+.+.+.
T Consensus 175 EP~s~LD~~~r~~l~~~l~~l~~~~--g~tii~vTHd~~ea~ 214 (377)
T PRK11607 175 EPMGALDKKLRDRMQLEVVDILERV--GVTCVMVTHDQEEAM 214 (377)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhc--CCEEEEEcCCHHHHH
Confidence 9999999998888865444443333 679999999998754
No 121
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=4.8e-13 Score=141.82 Aligned_cols=130 Identities=15% Similarity=0.146 Sum_probs=86.6
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh----------------------hcCccccCCce-ee---
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS----------------------HIGSFVPADAA-TV--- 592 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la----------------------q~g~~vpa~~~-~~--- 592 (792)
..+.++++|+.. |++++|+||||||||||||+++++.... +...|||.+.. .+
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 93 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYT 93 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccc
Confidence 457889999988 9999999999999999999998654210 11124444321 00
Q ss_pred ecc------------c-cc----------------chhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHH
Q 043119 593 GLT------------D-SK----------------HMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGI 642 (792)
Q Consensus 593 ~~~------------~-~~----------------~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~ 642 (792)
.+. + .+ ......+.++.++ ++++.+...+.+|+++|+|||++|+|+....
T Consensus 94 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~ 173 (271)
T PRK13638 94 DIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRT 173 (271)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 000 0 00 0001123344444 4455555567999999999999999998888
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 643 GLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 643 ~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+. .++..+.+. +.++|++||+++.+.
T Consensus 174 ~l~-~~l~~~~~~--g~tii~vtH~~~~~~ 200 (271)
T PRK13638 174 QMI-AIIRRIVAQ--GNHVIISSHDIDLIY 200 (271)
T ss_pred HHH-HHHHHHHHC--CCEEEEEeCCHHHHH
Confidence 775 566666654 578999999998874
No 122
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.43 E-value=6.7e-13 Score=146.26 Aligned_cols=142 Identities=17% Similarity=0.152 Sum_probs=91.7
Q ss_pred EEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC-------------------c
Q 043119 524 LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIG-------------------S 583 (792)
Q Consensus 524 l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g-------------------~ 583 (792)
+.+++...-+ .+..+.++++|+.. |++++|+||||||||||||+++++.-. ..| .
T Consensus 4 l~i~~l~~~~----~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p-~~G~I~~~g~~i~~~~~~~~~i~ 78 (369)
T PRK11000 4 VTLRNVTKAY----GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI-TSGDLFIGEKRMNDVPPAERGVG 78 (369)
T ss_pred EEEEEEEEEe----CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEECCEECCCCCHhHCCEE
Confidence 4455544333 23457789999988 999999999999999999999876421 111 1
Q ss_pred cccCCceeee---ccc-----------------------------ccchhhccchhHH-HHHHHHHHHHhCCCCeEEEEe
Q 043119 584 FVPADAATVG---LTD-----------------------------SKHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLD 630 (792)
Q Consensus 584 ~vpa~~~~~~---~~~-----------------------------~~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllD 630 (792)
|||.+...++ +.+ ........+.++. |.++++.+...+.+|+++|||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLD 158 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3333321111 000 0000011223343 445555555668999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 631 EFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 631 E~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
||++|+|+.....+. ..++.+.+.. +.++|++||+.+.+.
T Consensus 159 EPts~LD~~~~~~l~-~~L~~l~~~~-g~tvI~vTHd~~~~~ 198 (369)
T PRK11000 159 EPLSNLDAALRVQMR-IEISRLHKRL-GRTMIYVTHDQVEAM 198 (369)
T ss_pred CCcccCCHHHHHHHH-HHHHHHHHHh-CCEEEEEeCCHHHHH
Confidence 999999998888885 4566665431 579999999998754
No 123
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=5.9e-13 Score=145.45 Aligned_cols=130 Identities=15% Similarity=0.152 Sum_probs=86.9
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH------------------------hhcCccccCCceee--
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL------------------------SHIGSFVPADAATV-- 592 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l------------------------aq~g~~vpa~~~~~-- 592 (792)
..+.++++|+.. |++++|+||||||||||+|+++++.-. .++ .|||....-+
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i-g~v~q~~~l~~~ 96 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQI-GMIFQHFNLLSS 96 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCE-EEEeCCCccCCC
Confidence 356789999988 999999999999999999999876421 012 1333332111
Q ss_pred -eccc-----------------------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHH
Q 043119 593 -GLTD-----------------------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDG 641 (792)
Q Consensus 593 -~~~~-----------------------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~ 641 (792)
.+.+ ........+.++.++ ++++.+...+.+|+++|+|||++|+|+...
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~ 176 (343)
T PRK11153 97 RTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176 (343)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 0000 000011123344444 445555556789999999999999999888
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 642 IGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 642 ~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+. .++..+.+. .+.++|++||+++.+.
T Consensus 177 ~~l~-~~L~~l~~~-~g~tiilvtH~~~~i~ 205 (343)
T PRK11153 177 RSIL-ELLKDINRE-LGLTIVLITHEMDVVK 205 (343)
T ss_pred HHHH-HHHHHHHHh-cCCEEEEEeCCHHHHH
Confidence 8874 566666543 2579999999998865
No 124
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.43 E-value=6.6e-13 Score=138.38 Aligned_cols=131 Identities=13% Similarity=0.117 Sum_probs=86.2
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh-----------------------hcCccccCCceeee--
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS-----------------------HIGSFVPADAATVG-- 593 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la-----------------------q~g~~vpa~~~~~~-- 593 (792)
..+.++++|+.. |++++|+||||||||||+|+++++.... +.-.|+|.....++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERL 93 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccC
Confidence 356778999988 9999999999999999999998654210 01123443321100
Q ss_pred -ccc-------------------------------------ccchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCC
Q 043119 594 -LTD-------------------------------------SKHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGK 634 (792)
Q Consensus 594 -~~~-------------------------------------~~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~ 634 (792)
+.+ ..........++. |.++++.+...+.+|+++|+|||++
T Consensus 94 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 173 (241)
T cd03256 94 SVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVA 173 (241)
T ss_pred cHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 000 0000011223333 4445555555678999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 635 GTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 635 gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|.|+.....+. .+++.+.+.. +.++|++||+++.+.
T Consensus 174 ~LD~~~~~~l~-~~l~~~~~~~-~~tii~~tH~~~~~~ 209 (241)
T cd03256 174 SLDPASSRQVM-DLLKRINREE-GITVIVSLHQVDLAR 209 (241)
T ss_pred cCCHHHHHHHH-HHHHHHHHhc-CCEEEEEeCCHHHHH
Confidence 99998888774 5676766432 578999999998875
No 125
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.42 E-value=8.9e-13 Score=137.57 Aligned_cols=130 Identities=22% Similarity=0.214 Sum_probs=86.2
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHH-HHh---------------------hcC-ccccCCceeeec-
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIV-FLS---------------------HIG-SFVPADAATVGL- 594 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~-~la---------------------q~g-~~vpa~~~~~~~- 594 (792)
..+.++++|+.. |++++|+||||||||||||++++.. .-. ..+ .|||.....++-
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGV 92 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCc
Confidence 345678888888 9999999999999999999998862 101 111 233333211000
Q ss_pred ---------------------cc-----------------c-cchhhccc-hhHHHH-HHHHHHHHhCCCCeEEEEeCCC
Q 043119 595 ---------------------TD-----------------S-KHMTAEQS-SFMIDL-HQVGMMLRQATSQSLCLLDEFG 633 (792)
Q Consensus 595 ---------------------~~-----------------~-~~~~~~~s-~f~~e~-~~~~~~l~~~~~~slvllDE~~ 633 (792)
.+ . ........ .++.++ ++++.+...+.+|+++|||||+
T Consensus 93 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 172 (243)
T TIGR01978 93 SNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEID 172 (243)
T ss_pred CHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 00 0 00001111 254444 4555555667899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 634 KGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 634 ~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+|.|+.....+. .++..+.+. +.++|++||+.+.+.
T Consensus 173 ~~LD~~~~~~l~-~~l~~~~~~--~~tvi~vsH~~~~~~ 208 (243)
T TIGR01978 173 SGLDIDALKIVA-EGINRLREP--DRSFLIITHYQRLLN 208 (243)
T ss_pred ccCCHHHHHHHH-HHHHHHHHC--CcEEEEEEecHHHHH
Confidence 999998888885 566666653 579999999999875
No 126
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.42 E-value=7.8e-13 Score=138.01 Aligned_cols=131 Identities=14% Similarity=0.136 Sum_probs=86.0
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH-----------------------hhcCccccCCceeee--
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL-----------------------SHIGSFVPADAATVG-- 593 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l-----------------------aq~g~~vpa~~~~~~-- 593 (792)
..+.++++|+.. |++++|+||||||||||||+++++... .+.-.|+|.....++
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERL 94 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccc
Confidence 346778999988 999999999999999999999865411 011124443321110
Q ss_pred -ccc-------------------------------------ccchhhccchhHHH-HHHHHHHHHhCCCCeEEEEeCCCC
Q 043119 594 -LTD-------------------------------------SKHMTAEQSSFMID-LHQVGMMLRQATSQSLCLLDEFGK 634 (792)
Q Consensus 594 -~~~-------------------------------------~~~~~~~~s~f~~e-~~~~~~~l~~~~~~slvllDE~~~ 634 (792)
+.+ ........+.++.+ .++++.+...+.+|+++|+|||++
T Consensus 95 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~ 174 (243)
T TIGR02315 95 TVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIA 174 (243)
T ss_pred cHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 000 00000112334433 445555556679999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 635 GTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 635 gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|.|+.....+. .+++.+.+.. +.++|++||+.+.+.
T Consensus 175 ~LD~~~~~~l~-~~l~~~~~~~-~~tiii~tH~~~~~~ 210 (243)
T TIGR02315 175 SLDPKTSKQVM-DYLKRINKED-GITVIINLHQVDLAK 210 (243)
T ss_pred cCCHHHHHHHH-HHHHHHHHHc-CCEEEEEeCCHHHHH
Confidence 99998877774 5666665432 578999999998764
No 127
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.42 E-value=8.1e-13 Score=143.52 Aligned_cols=130 Identities=17% Similarity=0.182 Sum_probs=87.9
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh------------------------hcCccccCCceeee--
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS------------------------HIGSFVPADAATVG-- 593 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la------------------------q~g~~vpa~~~~~~-- 593 (792)
.+.+|++|+.. |++++|+||||||||||+|+|+++.-.. .+| ++|....-++
T Consensus 19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig-~v~Q~~~l~~~~ 97 (343)
T TIGR02314 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIG-MIFQHFNLLSSR 97 (343)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEE-EEECCccccccC
Confidence 56789999988 9999999999999999999998764210 111 2333211110
Q ss_pred -ccc-----------------------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHH
Q 043119 594 -LTD-----------------------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGI 642 (792)
Q Consensus 594 -~~~-----------------------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~ 642 (792)
+.+ .+......+.++.++ ++++.+.+.+++|+++|+|||++|+|+....
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~ 177 (343)
T TIGR02314 98 TVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQ 177 (343)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHH
Confidence 000 000011123444443 4555555568999999999999999999888
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 643 GLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 643 ~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
.+. .+++.+.+. .+.++|++||+++.+..
T Consensus 178 ~i~-~lL~~l~~~-~g~tiiliTH~~~~v~~ 206 (343)
T TIGR02314 178 SIL-ELLKEINRR-LGLTILLITHEMDVVKR 206 (343)
T ss_pred HHH-HHHHHHHHh-cCCEEEEEeCCHHHHHH
Confidence 885 577777653 25799999999998753
No 128
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.42 E-value=8.4e-13 Score=145.16 Aligned_cols=144 Identities=12% Similarity=0.052 Sum_probs=94.7
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh------------------cCc
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH------------------IGS 583 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq------------------~g~ 583 (792)
.|.+++...-+ .+..+.++++|+.. |++++|+||||||||||||+|+++.-... .-.
T Consensus 14 ~L~l~~l~~~~----~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 14 LVELRGISKSF----DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN 89 (375)
T ss_pred eEEEEEEEEEE----CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 46777766554 23456788999988 99999999999999999999997653210 011
Q ss_pred cccCCceeeec---cc-----------------------------ccchhhccchhH-HHHHHHHHHHHhCCCCeEEEEe
Q 043119 584 FVPADAATVGL---TD-----------------------------SKHMTAEQSSFM-IDLHQVGMMLRQATSQSLCLLD 630 (792)
Q Consensus 584 ~vpa~~~~~~~---~~-----------------------------~~~~~~~~s~f~-~e~~~~~~~l~~~~~~slvllD 630 (792)
+|+...+-++- .+ ........+.++ +|.++++.+...+.+|+++|||
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLD 169 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLD 169 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 23332221110 00 000001112333 3455566666668999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 631 EFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 631 E~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
||++|+|+.....+. ..++.+.+. .+.++|++||+.+.+.
T Consensus 170 EP~s~LD~~~r~~l~-~~L~~l~~~-~g~tiI~vTHd~~ea~ 209 (375)
T PRK09452 170 ESLSALDYKLRKQMQ-NELKALQRK-LGITFVFVTHDQEEAL 209 (375)
T ss_pred CCCCcCCHHHHHHHH-HHHHHHHHh-cCCEEEEEeCCHHHHH
Confidence 999999998888885 466666553 2679999999998754
No 129
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=5.1e-13 Score=142.62 Aligned_cols=130 Identities=15% Similarity=0.095 Sum_probs=88.1
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH----------------------hhcCccccCCce-e---ee
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL----------------------SHIGSFVPADAA-T---VG 593 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l----------------------aq~g~~vpa~~~-~---~~ 593 (792)
.+.+|++|+.. |++++|+||||||||||+|+++++.-. .+...|||.... . ..
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 100 (287)
T PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEET 100 (287)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcccccc
Confidence 57889999988 999999999999999999999866311 111124555420 0 01
Q ss_pred ccc-----------------------------c--cchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHH
Q 043119 594 LTD-----------------------------S--KHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDG 641 (792)
Q Consensus 594 ~~~-----------------------------~--~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~ 641 (792)
+.+ . .......+.++.++ ++++.+...+.+|+++|+|||++|+|+...
T Consensus 101 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~ 180 (287)
T PRK13637 101 IEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGR 180 (287)
T ss_pred HHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHH
Confidence 100 0 00111123444444 444445555789999999999999999888
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 642 IGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 642 ~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+. .+++.+.+. .+.++|++||+++.+.
T Consensus 181 ~~l~-~~l~~l~~~-~g~tvi~vtHd~~~~~ 209 (287)
T PRK13637 181 DEIL-NKIKELHKE-YNMTIILVSHSMEDVA 209 (287)
T ss_pred HHHH-HHHHHHHHh-cCCEEEEEeCCHHHHH
Confidence 8884 577777653 2579999999998764
No 130
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.42 E-value=6.9e-13 Score=139.48 Aligned_cols=130 Identities=20% Similarity=0.205 Sum_probs=86.4
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhcCccccCCceee---ecc
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------------------SHIGSFVPADAATV---GLT 595 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------------------aq~g~~vpa~~~~~---~~~ 595 (792)
..+.++++|+.. |++++|+||||||||||+|.|+++.-. .+.-.|+|.+.... .+.
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVR 93 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHH
Confidence 457889999988 999999999999999999999875311 11112444432110 000
Q ss_pred c----c-----------------------------cchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHH
Q 043119 596 D----S-----------------------------KHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDG 641 (792)
Q Consensus 596 ~----~-----------------------------~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~ 641 (792)
+ . .......+.++. +.++++.+...+.+|+++|+|||++|.|+...
T Consensus 94 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 173 (256)
T TIGR03873 94 DVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQ 173 (256)
T ss_pred HHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHH
Confidence 0 0 000001122333 33445555555789999999999999999888
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 642 IGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 642 ~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+. .+++.+.+. +.++|++||+++.+.
T Consensus 174 ~~l~-~~l~~~~~~--~~tiii~sH~~~~~~ 201 (256)
T TIGR03873 174 LETL-ALVRELAAT--GVTVVAALHDLNLAA 201 (256)
T ss_pred HHHH-HHHHHHHhc--CCEEEEEeCCHHHHH
Confidence 7774 567777654 579999999999874
No 131
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.42 E-value=1e-12 Score=135.67 Aligned_cols=128 Identities=16% Similarity=0.148 Sum_probs=85.6
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHH-----HHhhcC-----------------------ccccCCce
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIV-----FLSHIG-----------------------SFVPADAA 590 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~-----~laq~g-----------------------~~vpa~~~ 590 (792)
..+.++++|+.. |++++|+||||||||||+|+++++. .. .-| .|+|....
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 91 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP-DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPN 91 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC-CCeEEEECCEEhhhcchHHHHHHhhEEEEecCch
Confidence 356778999987 9999999999999999999998876 21 111 13343321
Q ss_pred ee--eccc------------------------------ccchhhc--cchhHHHHHH-HHHHHHhCCCCeEEEEeCCCCC
Q 043119 591 TV--GLTD------------------------------SKHMTAE--QSSFMIDLHQ-VGMMLRQATSQSLCLLDEFGKG 635 (792)
Q Consensus 591 ~~--~~~~------------------------------~~~~~~~--~s~f~~e~~~-~~~~l~~~~~~slvllDE~~~g 635 (792)
.+ .+.+ ....... .+.++.++++ ++.+...+.+|+++|+|||++|
T Consensus 92 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 171 (227)
T cd03260 92 PFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA 171 (227)
T ss_pred hccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 10 0000 0000011 1455555544 4444455789999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 636 TLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 636 t~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.|+.....+. .++..+.+. .++|++||+.+.+.
T Consensus 172 LD~~~~~~l~-~~l~~~~~~---~tii~~sH~~~~~~ 204 (227)
T cd03260 172 LDPISTAKIE-ELIAELKKE---YTIVIVTHNMQQAA 204 (227)
T ss_pred CCHHHHHHHH-HHHHHHhhC---cEEEEEeccHHHHH
Confidence 9998888774 566666542 58999999998764
No 132
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=1.1e-12 Score=137.81 Aligned_cols=130 Identities=18% Similarity=0.179 Sum_probs=86.4
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhcCccccCCceee---ecc
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------------------SHIGSFVPADAATV---GLT 595 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------------------aq~g~~vpa~~~~~---~~~ 595 (792)
..+.++++|+.. |++++|+||||||||||||.++++.-. .+.-.|+|.+.... .+.
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 94 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVR 94 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHH
Confidence 457789999887 999999999999999999999875311 01112444432110 000
Q ss_pred c----c-----------------c------------chhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHH
Q 043119 596 D----S-----------------K------------HMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDG 641 (792)
Q Consensus 596 ~----~-----------------~------------~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~ 641 (792)
+ . + ......+.++. |.++++.+...+.+|+++|+|||++|.|+...
T Consensus 95 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 174 (255)
T PRK11231 95 ELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQ 174 (255)
T ss_pred HHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 0 0 0 00011223333 44556666666899999999999999999888
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 642 IGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 642 ~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+. .++..+.+. +.++|++||+++.+.
T Consensus 175 ~~l~-~~l~~l~~~--~~tiii~tH~~~~~~ 202 (255)
T PRK11231 175 VELM-RLMRELNTQ--GKTVVTVLHDLNQAS 202 (255)
T ss_pred HHHH-HHHHHHHHC--CCEEEEEECCHHHHH
Confidence 8775 456666553 579999999999764
No 133
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.42 E-value=9.5e-13 Score=137.24 Aligned_cols=130 Identities=15% Similarity=0.091 Sum_probs=84.8
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hcCccccCCceee---ecc-
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------------HIGSFVPADAATV---GLT- 595 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------------q~g~~vpa~~~~~---~~~- 595 (792)
.+.++++|+.. |++++|+||||||||||||+++++.-.. ..-.|+|.....+ ++.
T Consensus 15 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 94 (242)
T cd03295 15 KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEE 94 (242)
T ss_pred eEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHH
Confidence 45678889887 9999999999999999999998763210 0012333332111 000
Q ss_pred -----------c-----------------cc--chhhccchhHHH-HHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHH
Q 043119 596 -----------D-----------------SK--HMTAEQSSFMID-LHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGL 644 (792)
Q Consensus 596 -----------~-----------------~~--~~~~~~s~f~~e-~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l 644 (792)
+ .. ......+.++.+ .++++.+...+.+|+++|+|||++|.|+.....+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l 174 (242)
T cd03295 95 NIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQL 174 (242)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH
Confidence 0 00 001112234433 3445555556799999999999999999887777
Q ss_pred HHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 645 LGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 645 ~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
. .++..+.+.. +.++|++||+.+.+.
T Consensus 175 ~-~~L~~~~~~~-g~tvii~sH~~~~~~ 200 (242)
T cd03295 175 Q-EEFKRLQQEL-GKTIVFVTHDIDEAF 200 (242)
T ss_pred H-HHHHHHHHHc-CCEEEEEecCHHHHH
Confidence 4 5666665531 578999999998764
No 134
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.42 E-value=5.4e-13 Score=136.09 Aligned_cols=126 Identities=18% Similarity=0.102 Sum_probs=82.1
Q ss_pred ceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh------------------cCccccCCceee---eccc------
Q 043119 545 DTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH------------------IGSFVPADAATV---GLTD------ 596 (792)
Q Consensus 545 ~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq------------------~g~~vpa~~~~~---~~~~------ 596 (792)
+++|+.. |++++|+||||||||||+|+++++.-... .-.|+|.+...+ .+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 95 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGL 95 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccc
Confidence 7888877 99999999999999999999987642110 011333332110 0000
Q ss_pred c---------c--------------chhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 043119 597 S---------K--------------HMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYF 652 (792)
Q Consensus 597 ~---------~--------------~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l 652 (792)
. + ........++.++ ++++.+...+.+|+++|+|||++|.|+.....+. .++..+
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~ 174 (211)
T cd03298 96 SPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEML-DLVLDL 174 (211)
T ss_pred ccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHH
Confidence 0 0 0001112344333 4455555567899999999999999998888885 466666
Q ss_pred HhCCCCcEEEEEccChhhhh
Q 043119 653 VTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 653 ~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+. .+.++|++||+.+.+.
T Consensus 175 ~~~-~~~tii~~sH~~~~~~ 193 (211)
T cd03298 175 HAE-TKMTVLMVTHQPEDAK 193 (211)
T ss_pred HHh-cCCEEEEEecCHHHHH
Confidence 542 2579999999998875
No 135
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.41 E-value=4.2e-13 Score=142.62 Aligned_cols=142 Identities=17% Similarity=0.178 Sum_probs=93.6
Q ss_pred EEEecccceeeecccCce-eccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh-----cCc-------------
Q 043119 524 LDIQNGRHVLQEMTVDTF-IPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH-----IGS------------- 583 (792)
Q Consensus 524 l~i~~~~hp~~~~~~~~~-v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq-----~g~------------- 583 (792)
|.+++...-+ +.+ +.++++++.. |++++|+|||||||||+||+||++.-... .|-
T Consensus 4 i~l~~v~K~y-----g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~ia 78 (338)
T COG3839 4 LELKNVRKSF-----GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIA 78 (338)
T ss_pred EEEeeeEEEc-----CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEE
Confidence 4455544443 334 8889999998 99999999999999999999998763321 111
Q ss_pred cccCCceeeec---cc-----------------------------ccchhhccchhHH-HHHHHHHHHHhCCCCeEEEEe
Q 043119 584 FVPADAATVGL---TD-----------------------------SKHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLD 630 (792)
Q Consensus 584 ~vpa~~~~~~~---~~-----------------------------~~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllD 630 (792)
.|+...+-++- .+ ...+.+.-+..++ +.|+++..-+...+|+++|||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~D 158 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLD 158 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEec
Confidence 12222221111 11 0011111233333 345555555567999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 631 EFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 631 E~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
||.+.+|..-+..+- .-+..+.++ .+.|+|++|||...+.
T Consensus 159 EPlSnLDa~lR~~mr-~ei~~lh~~-l~~T~IYVTHDq~EAm 198 (338)
T COG3839 159 EPLSNLDAKLRVLMR-SEIKKLHER-LGTTTIYVTHDQVEAM 198 (338)
T ss_pred CchhHhhHHHHHHHH-HHHHHHHHh-cCCcEEEEcCCHHHHH
Confidence 999999999888884 455666664 3789999999987764
No 136
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.41 E-value=1.2e-12 Score=135.13 Aligned_cols=129 Identities=16% Similarity=0.100 Sum_probs=84.4
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH------------------------hhcCccccCCce--e--
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL------------------------SHIGSFVPADAA--T-- 591 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l------------------------aq~g~~vpa~~~--~-- 591 (792)
.+.++++|+.. |++++|+||||||||||||.+++.... .++ .|+|.... .
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i-~~~~q~~~~~~~~ 97 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEI-QMVFQDPMSSLNP 97 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccE-EEEecCchhhcCC
Confidence 46789999988 999999999999999999999865411 011 13333320 0
Q ss_pred -eeccc-----------------ccc----------h-----hhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCC
Q 043119 592 -VGLTD-----------------SKH----------M-----TAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTL 637 (792)
Q Consensus 592 -~~~~~-----------------~~~----------~-----~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~ 637 (792)
.++.+ .+. + ......++. |.++++.+...+.+|+++|||||++|.|
T Consensus 98 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD 177 (228)
T cd03257 98 RMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALD 177 (228)
T ss_pred cCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCC
Confidence 00000 000 0 001123333 3444555555678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 638 TEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 638 ~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+.....+. .++..+.+.. +.++|++||+.+.+.
T Consensus 178 ~~~~~~l~-~~l~~~~~~~-~~tii~~sH~~~~~~ 210 (228)
T cd03257 178 VSVQAQIL-DLLKKLQEEL-GLTLLFITHDLGVVA 210 (228)
T ss_pred HHHHHHHH-HHHHHHHHHc-CCEEEEEeCCHHHHH
Confidence 98888775 4566665431 569999999998765
No 137
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.41 E-value=1.4e-12 Score=137.96 Aligned_cols=145 Identities=14% Similarity=0.127 Sum_probs=93.3
Q ss_pred CCCcEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH----hhcC------------
Q 043119 520 LEPLLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL----SHIG------------ 582 (792)
Q Consensus 520 ~~~~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l----aq~g------------ 582 (792)
....+.+++....+ .+..+.++++|+.. |++++|+||||||||||||+++++.-. ...|
T Consensus 10 ~~~~l~i~nl~~~~----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~ 85 (269)
T PRK14259 10 KNIIISLQNVTISY----GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDP 85 (269)
T ss_pred CCceEEEEeEEEEE----CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 33456777665443 23457889999988 999999999999999999999876421 0111
Q ss_pred -----------ccccCCceeee--ccc--------c------c-c-----------------hhhccchhHH-HHHHHHH
Q 043119 583 -----------SFVPADAATVG--LTD--------S------K-H-----------------MTAEQSSFMI-DLHQVGM 616 (792)
Q Consensus 583 -----------~~vpa~~~~~~--~~~--------~------~-~-----------------~~~~~s~f~~-e~~~~~~ 616 (792)
.|+|.....++ +.+ . + . .......++. |.++++.
T Consensus 86 ~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~l 165 (269)
T PRK14259 86 RVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCI 165 (269)
T ss_pred cCCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHH
Confidence 13333211000 000 0 0 0 0001122333 3445555
Q ss_pred HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 617 MLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 617 ~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+...+.+|+++|+|||++|.|+.....+. .+++.+.+ +.++|++||+.+.+.
T Consensus 166 aral~~~p~lllLDEPt~gLD~~~~~~l~-~~l~~~~~---~~tiiivtH~~~~~~ 217 (269)
T PRK14259 166 ARTIAIEPEVILMDEPCSALDPISTLKIE-ETMHELKK---NFTIVIVTHNMQQAV 217 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhc---CCEEEEEeCCHHHHH
Confidence 55567899999999999999998888874 56666643 468999999998775
No 138
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=5.9e-13 Score=142.18 Aligned_cols=129 Identities=16% Similarity=0.105 Sum_probs=86.8
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh------------------------hcCccccCCce--e--
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS------------------------HIGSFVPADAA--T-- 591 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la------------------------q~g~~vpa~~~--~-- 591 (792)
.+.+|++|+.. |++++|+||||||||||||+++++.-.. +.-.|+|.... .
T Consensus 21 ~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 100 (287)
T PRK13641 21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFE 100 (287)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhcc
Confidence 46789999988 9999999999999999999998763210 01124444310 0
Q ss_pred eeccc-----------------------------c-cchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHH
Q 043119 592 VGLTD-----------------------------S-KHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTED 640 (792)
Q Consensus 592 ~~~~~-----------------------------~-~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~ 640 (792)
..+.+ . .......+.++.++ ++++.+...+.+|+++|||||++|.|+..
T Consensus 101 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~ 180 (287)
T PRK13641 101 NTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEG 180 (287)
T ss_pred chHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHH
Confidence 01000 0 00011123444444 44555555578999999999999999988
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 641 GIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 641 ~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
...+. .+++.+.+. +.++|++||+++.+.
T Consensus 181 ~~~l~-~~l~~l~~~--g~tvlivsH~~~~~~ 209 (287)
T PRK13641 181 RKEMM-QLFKDYQKA--GHTVILVTHNMDDVA 209 (287)
T ss_pred HHHHH-HHHHHHHhC--CCEEEEEeCCHHHHH
Confidence 88774 577777654 679999999999875
No 139
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.41 E-value=5.1e-13 Score=142.78 Aligned_cols=144 Identities=17% Similarity=0.115 Sum_probs=97.9
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh--------cCccccCCceeee
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH--------IGSFVPADAATVG 593 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq--------~g~~vpa~~~~~~ 593 (792)
.+.+++..+-+ .+..+..|++++.. |+++.|.||+||||||+||+||++.-... .-.-+|+.+-.++
T Consensus 5 ~l~i~~v~k~y----g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 5 ALEIRNVSKSF----GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred eEEEEeeeeec----CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 46666655554 35788889999998 99999999999999999999998764321 1112444333222
Q ss_pred ccc-----------ccc---------------h-----------------hhccchhH-HHHHHHHHHHHhCCCCeEEEE
Q 043119 594 LTD-----------SKH---------------M-----------------TAEQSSFM-IDLHQVGMMLRQATSQSLCLL 629 (792)
Q Consensus 594 ~~~-----------~~~---------------~-----------------~~~~s~f~-~e~~~~~~~l~~~~~~slvll 629 (792)
++- .++ + .+..+..+ ++.++.+.+-+.+.+|.++||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLL 160 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLL 160 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhh
Confidence 211 000 0 00112222 244556666666899999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 630 DEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 630 DE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|||.+..|..=+..+-..+.+...+. +.|+|++|||.+.+-
T Consensus 161 DEPlSaLD~kLR~~mr~Elk~lq~~~--giT~i~VTHDqeEAl 201 (352)
T COG3842 161 DEPLSALDAKLREQMRKELKELQREL--GITFVYVTHDQEEAL 201 (352)
T ss_pred cCcccchhHHHHHHHHHHHHHHHHhc--CCeEEEEECCHHHHh
Confidence 99999999998888866554444443 789999999998763
No 140
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.41 E-value=1.4e-12 Score=134.23 Aligned_cols=130 Identities=14% Similarity=0.119 Sum_probs=84.8
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------hcCc-cccCCce----eeec----c
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------HIGS-FVPADAA----TVGL----T 595 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------q~g~-~vpa~~~----~~~~----~ 595 (792)
..+.++++|+.. |++++|+||||||||||+|+++++.-.. +.+. +.|.... .++. .
T Consensus 35 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~ 114 (224)
T cd03220 35 FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGL 114 (224)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCC
Confidence 456789999988 9999999999999999999998764210 1111 1111000 0000 0
Q ss_pred c-----------------ccchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCC
Q 043119 596 D-----------------SKHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDV 657 (792)
Q Consensus 596 ~-----------------~~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~ 657 (792)
+ ........+.++. |.++++.+...+.+|+++|+|||++|.|+.....+. ..++.+.+.
T Consensus 115 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~-~~l~~~~~~-- 191 (224)
T cd03220 115 SRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQ-RRLRELLKQ-- 191 (224)
T ss_pred CHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhC--
Confidence 0 0000111233333 445555555667899999999999999998888875 456666553
Q ss_pred CcEEEEEccChhhhh
Q 043119 658 PPKVLVCTHLTELLN 672 (792)
Q Consensus 658 ~~~~l~~TH~~~l~~ 672 (792)
+.++|++||+.+.+.
T Consensus 192 ~~tiii~sH~~~~~~ 206 (224)
T cd03220 192 GKTVILVSHDPSSIK 206 (224)
T ss_pred CCEEEEEeCCHHHHH
Confidence 568999999998765
No 141
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=1.2e-12 Score=138.29 Aligned_cols=143 Identities=14% Similarity=0.128 Sum_probs=92.6
Q ss_pred EEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhcC
Q 043119 524 LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------------------SHIG 582 (792)
Q Consensus 524 l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------------------aq~g 582 (792)
+.+++....+ .+..+.++++|+.. |++++|+||||||||||+|+++++.-. .+.-
T Consensus 12 l~i~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 12 FALRNVSFRV----PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred EEEeeEEEEE----CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5666655443 23457789999988 999999999999999999999876421 0011
Q ss_pred ccccCCceee---eccc----c-----------------c------------chhhccchhHH-HHHHHHHHHHhCCCCe
Q 043119 583 SFVPADAATV---GLTD----S-----------------K------------HMTAEQSSFMI-DLHQVGMMLRQATSQS 625 (792)
Q Consensus 583 ~~vpa~~~~~---~~~~----~-----------------~------------~~~~~~s~f~~-e~~~~~~~l~~~~~~s 625 (792)
.|+|.....+ .+.+ . + ........++. |.++++.+...+.+|+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ 167 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSR 167 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 2444331110 0000 0 0 00001123443 4455555556689999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 626 LCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 626 lvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
++|+|||++|.|+.....+. .++..+.+.. +.++|++||+.+.+.
T Consensus 168 lllLDEPt~~LD~~~~~~~~-~~l~~l~~~~-~~tiii~sH~~~~i~ 212 (265)
T PRK10575 168 CLLLDEPTSALDIAHQVDVL-ALVHRLSQER-GLTVIAVLHDINMAA 212 (265)
T ss_pred EEEEcCCcccCCHHHHHHHH-HHHHHHHHhc-CCEEEEEeCCHHHHH
Confidence 99999999999998888774 5666665432 578999999998764
No 142
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.41 E-value=7.5e-13 Score=144.61 Aligned_cols=131 Identities=15% Similarity=0.087 Sum_probs=87.1
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH------------------------hhcCccccCCceeee-
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL------------------------SHIGSFVPADAATVG- 593 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l------------------------aq~g~~vpa~~~~~~- 593 (792)
..+.+|++|+.. |++++|+||||||||||||+++++... .+.-.|||....-++
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 446689999998 999999999999999999999876421 111124443322111
Q ss_pred --ccc-----------------------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHH
Q 043119 594 --LTD-----------------------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDG 641 (792)
Q Consensus 594 --~~~-----------------------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~ 641 (792)
+.+ ........+.++.++ ++++.+...+.+|+++|||||++|+||...
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r 165 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIR 165 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 000 000011123344444 445555556899999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 642 IGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 642 ~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+.. .+..+.+. .+.++||+||+++.+.
T Consensus 166 ~~l~~-~l~~l~~~-~~~Tii~vTHd~~ea~ 194 (363)
T TIGR01186 166 DSMQD-ELKKLQAT-LQKTIVFITHDLDEAI 194 (363)
T ss_pred HHHHH-HHHHHHHh-cCCEEEEEeCCHHHHH
Confidence 98865 45555443 2579999999998764
No 143
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.41 E-value=1.6e-12 Score=136.55 Aligned_cols=141 Identities=11% Similarity=0.127 Sum_probs=89.6
Q ss_pred EEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH--H--hhcC----------------
Q 043119 524 LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF--L--SHIG---------------- 582 (792)
Q Consensus 524 l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~--l--aq~g---------------- 582 (792)
|.+++...-+ .+..+.++++|+.. |++++|+||||||||||||+++++.- . ...|
T Consensus 7 l~~~~l~~~~----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 7 MEARGLSFFY----GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEeeeEEEE----CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 4555544333 12357789999988 99999999999999999999987631 1 0112
Q ss_pred -------ccccCCceeee--ccc--------c----------c--------ch--------hhccchhHHHH-HHHHHHH
Q 043119 583 -------SFVPADAATVG--LTD--------S----------K--------HM--------TAEQSSFMIDL-HQVGMML 618 (792)
Q Consensus 583 -------~~vpa~~~~~~--~~~--------~----------~--------~~--------~~~~s~f~~e~-~~~~~~l 618 (792)
.|+|.....+. +.+ . + .+ ......++.++ ++++.+.
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 162 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIAR 162 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHH
Confidence 12332211000 000 0 0 00 01112344444 4455555
Q ss_pred HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 619 RQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 619 ~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+.+|+++|+|||++|.|+.....+. .++..+.+ +.++|++||+.+.+.
T Consensus 163 al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~---~~tvii~tH~~~~~~ 212 (253)
T PRK14242 163 ALAVEPEVLLMDEPASALDPIATQKIE-ELIHELKA---RYTIIIVTHNMQQAA 212 (253)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhc---CCeEEEEEecHHHHH
Confidence 567899999999999999998888875 46666643 468999999998764
No 144
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.41 E-value=1.2e-12 Score=134.32 Aligned_cols=128 Identities=19% Similarity=0.175 Sum_probs=84.8
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hcCccccCCceeee--ccc
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------------HIGSFVPADAATVG--LTD 596 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------------q~g~~vpa~~~~~~--~~~ 596 (792)
..+.++++|+.. |++++|+||||||||||+|++++..... ..-.|+|.....+. +.+
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 96 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRD 96 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHH
Confidence 357789999988 9999999999999999999998764210 01124444322110 000
Q ss_pred ---------c--c------------chhh-----------ccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHH
Q 043119 597 ---------S--K------------HMTA-----------EQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDG 641 (792)
Q Consensus 597 ---------~--~------------~~~~-----------~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~ 641 (792)
. + .... ..+.++.++ +++..+...+.+|+++|+|||++|+|+...
T Consensus 97 ~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 176 (220)
T cd03245 97 NITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSE 176 (220)
T ss_pred HhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 0 0 0000 012455444 444555555789999999999999999988
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccChhhh
Q 043119 642 IGLLGGTINYFVTCDVPPKVLVCTHLTELL 671 (792)
Q Consensus 642 ~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~ 671 (792)
..+. .+++.+.+ +.++|++||++++.
T Consensus 177 ~~l~-~~l~~~~~---~~tii~~sH~~~~~ 202 (220)
T cd03245 177 ERLK-ERLRQLLG---DKTLIIITHRPSLL 202 (220)
T ss_pred HHHH-HHHHHhcC---CCEEEEEeCCHHHH
Confidence 8885 45666554 26899999999875
No 145
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=8.3e-13 Score=140.10 Aligned_cols=129 Identities=16% Similarity=0.095 Sum_probs=85.6
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh---------------------hcCccccCCce-ee---ec
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS---------------------HIGSFVPADAA-TV---GL 594 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la---------------------q~g~~vpa~~~-~~---~~ 594 (792)
.+.+|++|+.. |++++|+||||||||||||+++++.-.. ..-.|+|.... .+ .+
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv 95 (274)
T PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTV 95 (274)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchH
Confidence 46789999988 9999999999999999999998763210 00113333211 00 10
Q ss_pred cc--------c--------c-------------chhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHH
Q 043119 595 TD--------S--------K-------------HMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGL 644 (792)
Q Consensus 595 ~~--------~--------~-------------~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l 644 (792)
.+ . + ........++.++ ++++.+...+.+|+++|+|||++|.|+.....+
T Consensus 96 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l 175 (274)
T PRK13644 96 EEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAV 175 (274)
T ss_pred HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 00 0 0 0001123344444 445555556799999999999999999887777
Q ss_pred HHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 645 LGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 645 ~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
. .+++.+.+. +.++|++||+++.+.
T Consensus 176 ~-~~l~~l~~~--g~til~~tH~~~~~~ 200 (274)
T PRK13644 176 L-ERIKKLHEK--GKTIVYITHNLEELH 200 (274)
T ss_pred H-HHHHHHHhC--CCEEEEEecCHHHHh
Confidence 4 566666653 679999999998863
No 146
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=1.6e-12 Score=135.62 Aligned_cols=129 Identities=16% Similarity=0.124 Sum_probs=85.7
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC---------------------------ccccCCcee
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIG---------------------------SFVPADAAT 591 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g---------------------------~~vpa~~~~ 591 (792)
..+.++++|+.. |++++|+||||||||||+|+++++.-. +.| .|+|.....
T Consensus 15 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (242)
T PRK11124 15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP-RSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNL 93 (242)
T ss_pred eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEecccccccchhhHHHHHhheEEEecCccc
Confidence 346789999987 999999999999999999999876421 111 233332211
Q ss_pred e---eccc--c----------------------------cchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCC
Q 043119 592 V---GLTD--S----------------------------KHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTL 637 (792)
Q Consensus 592 ~---~~~~--~----------------------------~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~ 637 (792)
+ .+.+ . .........++. |.++++.+...+.+|+++|+|||++|.|
T Consensus 94 ~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD 173 (242)
T PRK11124 94 WPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173 (242)
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCC
Confidence 0 0000 0 000001122333 4455555556678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 638 TEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 638 ~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+.....+. .+++.+.+. +.++|++||+.+...
T Consensus 174 ~~~~~~l~-~~l~~~~~~--~~tii~~sh~~~~~~ 205 (242)
T PRK11124 174 PEITAQIV-SIIRELAET--GITQVIVTHEVEVAR 205 (242)
T ss_pred HHHHHHHH-HHHHHHHHc--CCEEEEEeCCHHHHH
Confidence 98877774 567776654 579999999998864
No 147
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.41 E-value=1e-12 Score=136.51 Aligned_cols=131 Identities=18% Similarity=0.075 Sum_probs=86.2
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh------------------hcCccccCCceeee---ccc-
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS------------------HIGSFVPADAATVG---LTD- 596 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la------------------q~g~~vpa~~~~~~---~~~- 596 (792)
..+.++++|+.. |++++|+||||||||||+|++++..... +.-.|+|.....++ +.+
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~en 92 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDN 92 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHH
Confidence 357789999988 9999999999999999999998764210 01123443321110 000
Q ss_pred ----c------------------------cchhhccchhHHH-HHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHH
Q 043119 597 ----S------------------------KHMTAEQSSFMID-LHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGG 647 (792)
Q Consensus 597 ----~------------------------~~~~~~~s~f~~e-~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~ 647 (792)
. .........++.+ .++++.+...+.+|+++|+|||++|.|+.....+. .
T Consensus 93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~-~ 171 (237)
T TIGR00968 93 IAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELR-S 171 (237)
T ss_pred HHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-H
Confidence 0 0000111234433 34555555567899999999999999998877774 5
Q ss_pred HHHHHHhCCCCcEEEEEccChhhhh
Q 043119 648 TINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 648 ~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+++.+.+. .++++|++||+++.+.
T Consensus 172 ~l~~~~~~-~~~tvli~sH~~~~~~ 195 (237)
T TIGR00968 172 WLRKLHDE-VHVTTVFVTHDQEEAM 195 (237)
T ss_pred HHHHHHHh-cCCEEEEEeCCHHHHH
Confidence 66666553 2579999999998764
No 148
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.41 E-value=1.2e-12 Score=137.04 Aligned_cols=128 Identities=14% Similarity=0.121 Sum_probs=84.1
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh----hcC-----------------------ccccCCceee
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS----HIG-----------------------SFVPADAATV 592 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la----q~g-----------------------~~vpa~~~~~ 592 (792)
.+.++++|+.. |++++|+||||||||||||.++++.... ..| .|+|.....+
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 46779999988 9999999999999999999998765321 011 1233221110
Q ss_pred e--ccc--------c--------------------------cchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCC
Q 043119 593 G--LTD--------S--------------------------KHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKG 635 (792)
Q Consensus 593 ~--~~~--------~--------------------------~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~g 635 (792)
+ +.+ . .........++. |.++++.+...+.+|+++|+|||++|
T Consensus 95 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~ 174 (247)
T TIGR00972 95 PMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSA 174 (247)
T ss_pred CCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 0 000 0 000011123333 34455555556789999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 636 TLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 636 t~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.|+.....+. .++..+.+ +.++|++||+++.+.
T Consensus 175 LD~~~~~~l~-~~l~~~~~---~~tiiivsH~~~~~~ 207 (247)
T TIGR00972 175 LDPIATGKIE-ELIQELKK---KYTIVIVTHNMQQAA 207 (247)
T ss_pred CCHHHHHHHH-HHHHHHHh---cCeEEEEecCHHHHH
Confidence 9998888774 56666655 368999999998764
No 149
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.40 E-value=8.8e-13 Score=147.45 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=85.7
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCc-cc-------cCC---ceeeec------------c
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGS-FV-------PAD---AATVGL------------T 595 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~-~v-------pa~---~~~~~~------------~ 595 (792)
..+.++++|+.. |++++|+||||||||||||+++++... ..|. .+ +.. ...+.+ .
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P-~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~ 115 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP-NKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGL 115 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCC-CceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCC
Confidence 457889999988 999999999999999999999876532 1110 00 000 000000 0
Q ss_pred c-----------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCC
Q 043119 596 D-----------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDV 657 (792)
Q Consensus 596 ~-----------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~ 657 (792)
+ ........+.++.++ ++++.+...+.+|+++|||||++|+|+.....+. .++..+.+.
T Consensus 116 ~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~Ll-elL~el~~~-- 192 (549)
T PRK13545 116 TKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCL-DKMNEFKEQ-- 192 (549)
T ss_pred CHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHH-HHHHHHHhC--
Confidence 0 000111123444444 4455555667899999999999999998888775 456666554
Q ss_pred CcEEEEEccChhhhh
Q 043119 658 PPKVLVCTHLTELLN 672 (792)
Q Consensus 658 ~~~~l~~TH~~~l~~ 672 (792)
+.++|++||+++.+.
T Consensus 193 G~TIIIVSHdl~~i~ 207 (549)
T PRK13545 193 GKTIFFISHSLSQVK 207 (549)
T ss_pred CCEEEEEECCHHHHH
Confidence 679999999998765
No 150
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.40 E-value=7.7e-13 Score=140.65 Aligned_cols=131 Identities=19% Similarity=0.130 Sum_probs=87.3
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hcCccccCCce-e---eec
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------------HIGSFVPADAA-T---VGL 594 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------------q~g~~vpa~~~-~---~~~ 594 (792)
..+.++++|+.. |++++|+||||||||||+|+++++.-.. +.-.|+|.+.. . ..+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv 99 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATV 99 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccH
Confidence 357789999988 9999999999999999999998764211 11123443321 0 011
Q ss_pred cc-----------------------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHH
Q 043119 595 TD-----------------------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGL 644 (792)
Q Consensus 595 ~~-----------------------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l 644 (792)
.+ ..........++.++ ++++.+...+.+|+++|+|||++|+|+.....+
T Consensus 100 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l 179 (279)
T PRK13635 100 QDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREV 179 (279)
T ss_pred HHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 11 000011123344444 445555555799999999999999999988888
Q ss_pred HHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 645 LGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 645 ~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
. .++..+.+. .+.++|++||+++.+.
T Consensus 180 ~-~~l~~l~~~-~~~tilivsH~~~~~~ 205 (279)
T PRK13635 180 L-ETVRQLKEQ-KGITVLSITHDLDEAA 205 (279)
T ss_pred H-HHHHHHHHc-CCCEEEEEecCHHHHH
Confidence 4 577777653 2579999999999864
No 151
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.40 E-value=1.1e-12 Score=133.17 Aligned_cols=129 Identities=17% Similarity=0.201 Sum_probs=85.6
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC--------ccccCCceee--eccc---------c---
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIG--------SFVPADAATV--GLTD---------S--- 597 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g--------~~vpa~~~~~--~~~~---------~--- 597 (792)
.+.++++|+.+ |++++|+||||||||||+|+++++.-. ..| .|+|.....+ .+.+ .
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~-~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~ 97 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK-LSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERY 97 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCC-CCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHH
Confidence 46778999988 999999999999999999999876421 112 2444432110 0000 0
Q ss_pred -c---------c-----------hhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhC
Q 043119 598 -K---------H-----------MTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTC 655 (792)
Q Consensus 598 -~---------~-----------~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~ 655 (792)
+ . .......++. +.++++.+...+.+|+++|+|||++|+|+.....+...++..+.+.
T Consensus 98 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~ 177 (204)
T cd03250 98 EKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN 177 (204)
T ss_pred HHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccC
Confidence 0 0 0001133443 3445555555679999999999999999987777755455555443
Q ss_pred CCCcEEEEEccChhhhh
Q 043119 656 DVPPKVLVCTHLTELLN 672 (792)
Q Consensus 656 ~~~~~~l~~TH~~~l~~ 672 (792)
+.++|++||+++...
T Consensus 178 --~~tvi~~sh~~~~~~ 192 (204)
T cd03250 178 --NKTRILVTHQLQLLP 192 (204)
T ss_pred --CCEEEEEeCCHHHHh
Confidence 579999999998765
No 152
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.40 E-value=1.4e-12 Score=135.72 Aligned_cols=131 Identities=20% Similarity=0.143 Sum_probs=85.7
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hcCccccCCceeee--ccc
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------------HIGSFVPADAATVG--LTD 596 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------------q~g~~vpa~~~~~~--~~~ 596 (792)
..+.++++|+.. |++++|+||||||||||+|.++++.-.. +...|+|.+...++ +.+
T Consensus 16 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e 95 (241)
T PRK14250 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKD 95 (241)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHH
Confidence 456789999988 9999999999999999999998764210 00113333321100 000
Q ss_pred -------------------------c-cchhhccchhH-HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHH
Q 043119 597 -------------------------S-KHMTAEQSSFM-IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTI 649 (792)
Q Consensus 597 -------------------------~-~~~~~~~s~f~-~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~ 649 (792)
. .........++ +|.++++.+...+.+|+++|+|||++|.|+.....+. ..+
T Consensus 96 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l 174 (241)
T PRK14250 96 NIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIE-ELI 174 (241)
T ss_pred HHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHH
Confidence 0 00011122333 3445555555567899999999999999998777774 566
Q ss_pred HHHHhCCCCcEEEEEccChhhhh
Q 043119 650 NYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 650 ~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+.+.. +.++|++||+.+.+.
T Consensus 175 ~~~~~~~-g~tii~~sH~~~~~~ 196 (241)
T PRK14250 175 VKLKNKM-NLTVIWITHNMEQAK 196 (241)
T ss_pred HHHHHhC-CCEEEEEeccHHHHH
Confidence 6666531 579999999998764
No 153
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.40 E-value=1.4e-12 Score=121.38 Aligned_cols=132 Identities=22% Similarity=0.234 Sum_probs=88.7
Q ss_pred cCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh-----cC---------------ccccCCceeee--c
Q 043119 538 VDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH-----IG---------------SFVPADAATVG--L 594 (792)
Q Consensus 538 ~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq-----~g---------------~~vpa~~~~~~--~ 594 (792)
.+..+.|+++|... |++.+||||.|||||||+|++|.+..+.- -| +|+-...+-+| +
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccch
Confidence 45678899999998 99999999999999999999987653211 01 11111111000 0
Q ss_pred cc----------------------------ccchhhccchh-HHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHH
Q 043119 595 TD----------------------------SKHMTAEQSSF-MIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLL 645 (792)
Q Consensus 595 ~~----------------------------~~~~~~~~s~f-~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~ 645 (792)
.| ...+.+..... .+|-++++.+-....-|.++||||+++.+|+.....|-
T Consensus 94 eDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie 173 (223)
T COG4619 94 EDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIE 173 (223)
T ss_pred hhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHH
Confidence 01 01111111112 24667777777777899999999999999999999995
Q ss_pred HHHHHHHHhCCCCcEEEEEccChhhh
Q 043119 646 GGTINYFVTCDVPPKVLVCTHLTELL 671 (792)
Q Consensus 646 ~~~~~~l~~~~~~~~~l~~TH~~~l~ 671 (792)
.-+.++..+. ...++++||+.+.+
T Consensus 174 ~mi~~~v~~q--~vAv~WiTHd~dqa 197 (223)
T COG4619 174 EMIHRYVREQ--NVAVLWITHDKDQA 197 (223)
T ss_pred HHHHHHhhhh--ceEEEEEecChHHH
Confidence 4444444454 56899999998874
No 154
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.40 E-value=9.6e-13 Score=136.02 Aligned_cols=126 Identities=13% Similarity=0.070 Sum_probs=81.8
Q ss_pred cceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC----------------ccccCCceee---eccc----c--
Q 043119 544 NDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIG----------------SFVPADAATV---GLTD----S-- 597 (792)
Q Consensus 544 n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g----------------~~vpa~~~~~---~~~~----~-- 597 (792)
++++|+.. |++++|+||||||||||+|+++++... ..| .++|.....+ .+.+ .
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP-TSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 46777777 999999999999999999999876421 111 1333321110 0000 0
Q ss_pred -------------------------cchhhccchhHHH-HHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 043119 598 -------------------------KHMTAEQSSFMID-LHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINY 651 (792)
Q Consensus 598 -------------------------~~~~~~~s~f~~e-~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~ 651 (792)
.......+.++.+ .++++.+...+.+|+++|+|||++|.|+.....+. .++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~-~~l~~ 159 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ-EELMQ 159 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH-HHHHH
Confidence 0000112234433 44555555567899999999999999998888885 45556
Q ss_pred HHhCCCCcEEEEEccChhhhh
Q 043119 652 FVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 652 l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+.+.. +.++|++||+++.+.
T Consensus 160 ~~~~~-~~tii~~sH~~~~~~ 179 (230)
T TIGR01184 160 IWEEH-RVTVLMVTHDVDEAL 179 (230)
T ss_pred HHHhc-CCEEEEEeCCHHHHH
Confidence 55432 579999999998764
No 155
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.40 E-value=1.2e-12 Score=151.36 Aligned_cols=143 Identities=16% Similarity=0.173 Sum_probs=93.4
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh-----cC--------------
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH-----IG-------------- 582 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq-----~g-------------- 582 (792)
.+.+++...-+ .+..+.++++|+.. |++++|+||||||||||||+++++..... -|
T Consensus 11 ~l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 86 (510)
T PRK15439 11 LLCARSISKQY----SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQL 86 (510)
T ss_pred eEEEEeEEEEe----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 35555554433 23457789999988 99999999999999999999987642110 01
Q ss_pred --ccccCCceeee---ccc-------------------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeC
Q 043119 583 --SFVPADAATVG---LTD-------------------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDE 631 (792)
Q Consensus 583 --~~vpa~~~~~~---~~~-------------------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE 631 (792)
.|||.....++ +.+ ........++++.++ ++++.+...+.+|+++|+||
T Consensus 87 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDE 166 (510)
T PRK15439 87 GIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDE 166 (510)
T ss_pred CEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 13333321110 000 000011123444444 44444555678999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 632 FGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 632 ~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|++|.|+.....+. .+++.+.+. +.++|++||+.+.+.
T Consensus 167 Pt~~LD~~~~~~l~-~~l~~~~~~--g~tiiivtHd~~~~~ 204 (510)
T PRK15439 167 PTASLTPAETERLF-SRIRELLAQ--GVGIVFISHKLPEIR 204 (510)
T ss_pred CCCCCCHHHHHHHH-HHHHHHHHC--CCEEEEEeCCHHHHH
Confidence 99999998888885 567777664 579999999988754
No 156
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.40 E-value=1.1e-12 Score=140.14 Aligned_cols=129 Identities=16% Similarity=0.171 Sum_probs=86.9
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh-------------------------hcCccccCCce--ee
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS-------------------------HIGSFVPADAA--TV 592 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la-------------------------q~g~~vpa~~~--~~ 592 (792)
.+.++++|+.. |++++|+||||||||||+|+++++.-.. .+ .|||.... -+
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i-g~v~q~~~~~l~ 99 (286)
T PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRI-GMVFQFPESQLF 99 (286)
T ss_pred CceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhe-EEEecChHhccc
Confidence 57889999988 9999999999999999999998664210 11 24444310 00
Q ss_pred --ecc------------c-----------------c-cchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHH
Q 043119 593 --GLT------------D-----------------S-KHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTE 639 (792)
Q Consensus 593 --~~~------------~-----------------~-~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~ 639 (792)
.+. + . .........++.++ ++++.+...+.+|+++|+|||++|.|+.
T Consensus 100 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~ 179 (286)
T PRK13646 100 EDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQ 179 (286)
T ss_pred hhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 000 0 0 00011123344443 4444445557899999999999999998
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 640 DGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 640 ~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
....+. .+++.+.+. .+.++|++||+++.+.
T Consensus 180 ~~~~l~-~~l~~l~~~-~g~tvl~vtH~~~~~~ 210 (286)
T PRK13646 180 SKRQVM-RLLKSLQTD-ENKTIILVSHDMNEVA 210 (286)
T ss_pred HHHHHH-HHHHHHHHh-CCCEEEEEecCHHHHH
Confidence 888884 577777653 2679999999998764
No 157
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.40 E-value=1.1e-12 Score=136.51 Aligned_cols=119 Identities=20% Similarity=0.221 Sum_probs=79.1
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhh--------cCccccCCcee---eeccc------------------------
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSH--------IGSFVPADAAT---VGLTD------------------------ 596 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq--------~g~~vpa~~~~---~~~~~------------------------ 596 (792)
|++++|+||||||||||||+++++..... .-.|+|..... ..+.+
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~ 104 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQ 104 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcC
Confidence 89999999999999999999987642210 11244433210 00100
Q ss_pred -ccchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 597 -SKHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 597 -~~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
........+.++. |.++++.+...+.+++++|+|||++|+|+.....+. .++..+.+.. +.++|++||+.+++.
T Consensus 105 l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~-~~tiiivsHd~~~~~ 180 (246)
T cd03237 105 IEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMAS-KVIRRFAENN-EKTAFVVEHDIIMID 180 (246)
T ss_pred CHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhc-CCEEEEEeCCHHHHH
Confidence 0001111234443 445566666678999999999999999999888885 4666665432 579999999998875
No 158
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.40 E-value=1.3e-12 Score=136.98 Aligned_cols=130 Identities=15% Similarity=0.110 Sum_probs=84.5
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh---------------------------------hcCcccc
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS---------------------------------HIGSFVP 586 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la---------------------------------q~g~~vp 586 (792)
.+.++++|+.. |++++|+||||||||||+|.++++.... +.-.|+|
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 93 (252)
T TIGR03005 14 TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVF 93 (252)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEe
Confidence 46789999988 9999999999999999999998764210 0111233
Q ss_pred CCceee---ecc-------------cc-----------------cchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCC
Q 043119 587 ADAATV---GLT-------------DS-----------------KHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEF 632 (792)
Q Consensus 587 a~~~~~---~~~-------------~~-----------------~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~ 632 (792)
.....+ .+. +. .......+.++. |.++++.+...+.+|+++|+|||
T Consensus 94 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 173 (252)
T TIGR03005 94 QSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEV 173 (252)
T ss_pred cCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 221110 000 00 000001122333 44555555556789999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 633 GKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 633 ~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
++|.|+.....+. .+++.+.+.. +.++|++||+++.+.
T Consensus 174 ~~~LD~~~~~~l~-~~l~~~~~~~-~~tiiivsH~~~~~~ 211 (252)
T TIGR03005 174 TSALDPELVGEVL-NVIRRLASEH-DLTMLLVTHEMGFAR 211 (252)
T ss_pred cccCCHHHHHHHH-HHHHHHHHhc-CcEEEEEeCCHHHHH
Confidence 9999998887775 4666665532 579999999998764
No 159
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.40 E-value=1.2e-12 Score=134.88 Aligned_cols=129 Identities=14% Similarity=0.130 Sum_probs=84.9
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--h--------------------------hcCccccCCcee
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--S--------------------------HIGSFVPADAAT 591 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--a--------------------------q~g~~vpa~~~~ 591 (792)
.+..+++|+.. |++++|+||||||||||+|.++++.-. + +...|+|.....
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 101 (224)
T TIGR02324 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRV 101 (224)
T ss_pred EEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEeccccc
Confidence 56778999987 999999999999999999999876321 0 001133333211
Q ss_pred ee-----------c----cc-----------------ccch-hhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCC
Q 043119 592 VG-----------L----TD-----------------SKHM-TAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTL 637 (792)
Q Consensus 592 ~~-----------~----~~-----------------~~~~-~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~ 637 (792)
.+ . .+ .... ......++. |.++++.+...+.+|+++|+|||++|.|
T Consensus 102 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD 181 (224)
T TIGR02324 102 IPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLD 181 (224)
T ss_pred CCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 00 0 00 0000 001122333 3445555555678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 638 TEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 638 ~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+.....+. .++..+.+. ++++|++||+.+.+.
T Consensus 182 ~~~~~~l~-~~l~~~~~~--g~tii~vsH~~~~~~ 213 (224)
T TIGR02324 182 AANRQVVV-ELIAEAKAR--GAALIGIFHDEEVRE 213 (224)
T ss_pred HHHHHHHH-HHHHHHHhc--CCEEEEEeCCHHHHH
Confidence 98888885 466666654 579999999998765
No 160
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.40 E-value=1.1e-12 Score=138.91 Aligned_cols=146 Identities=13% Similarity=0.092 Sum_probs=92.5
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hc
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------------HI 581 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------------q~ 581 (792)
.+.+++....+- ..+..+.++++|+.. |++++|+||||||||||+|+++++.-.. +.
T Consensus 7 ~l~~~nl~~~~~--~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 7 MIKVENVSFSYP--NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred EEEEEeEEEEcC--CCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 355555544331 012457789999988 9999999999999999999998774210 00
Q ss_pred CccccCCce-ee---eccc------------cc-----------------chhhccchhHH-HHHHHHHHHHhCCCCeEE
Q 043119 582 GSFVPADAA-TV---GLTD------------SK-----------------HMTAEQSSFMI-DLHQVGMMLRQATSQSLC 627 (792)
Q Consensus 582 g~~vpa~~~-~~---~~~~------------~~-----------------~~~~~~s~f~~-e~~~~~~~l~~~~~~slv 627 (792)
-.|+|.+.. .+ .+.+ .. ......+.++. |.++++.+...+.+|+++
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 164 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEII 164 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 124443321 00 1111 00 00011123333 445555555667999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 628 LLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 628 llDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|||||++|.|+.....+. .+++.+.+.+ +.++|++||+.+.+.
T Consensus 165 lLDEP~~gLD~~~~~~l~-~~l~~~~~~~-~~tiii~sH~~~~~~ 207 (271)
T PRK13632 165 IFDESTSMLDPKGKREIK-KIMVDLRKTR-KKTLISITHDMDEAI 207 (271)
T ss_pred EEeCCcccCCHHHHHHHH-HHHHHHHHhc-CcEEEEEEechhHHh
Confidence 999999999998877775 5666665532 479999999998763
No 161
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.40 E-value=8.6e-13 Score=134.55 Aligned_cols=126 Identities=13% Similarity=0.111 Sum_probs=81.1
Q ss_pred eccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCcc-------ccCCc-e----eeeccc------------
Q 043119 542 IPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSF-------VPADA-A----TVGLTD------------ 596 (792)
Q Consensus 542 v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~-------vpa~~-~----~~~~~~------------ 596 (792)
|.+|++|+.+ |++++|+|||||||||++|+++++... .-|.. ++... . .+++.+
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~ 80 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAP-DEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLD 80 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC-CCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCC
Confidence 5678999988 999999999999999999999876532 11211 11000 0 000000
Q ss_pred cc--------------chhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEE
Q 043119 597 SK--------------HMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKV 661 (792)
Q Consensus 597 ~~--------------~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~ 661 (792)
.+ ......+.++.++ ++++.+...+.+|+++|+|||+.+.|+.....+...+.+.+.+ .++
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~----~~i 156 (213)
T PRK15177 81 GDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQ----KGL 156 (213)
T ss_pred HHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhC----CcE
Confidence 00 0001122333333 4455556667899999999999999998888775544444432 358
Q ss_pred EEEccChhhhh
Q 043119 662 LVCTHLTELLN 672 (792)
Q Consensus 662 l~~TH~~~l~~ 672 (792)
|++||+++.+.
T Consensus 157 i~vsH~~~~~~ 167 (213)
T PRK15177 157 IVLTHNPRLIK 167 (213)
T ss_pred EEEECCHHHHH
Confidence 99999998875
No 162
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.40 E-value=1e-12 Score=139.32 Aligned_cols=129 Identities=19% Similarity=0.151 Sum_probs=87.4
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH---------------------hhcCccccCCce-ee---e
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL---------------------SHIGSFVPADAA-TV---G 593 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l---------------------aq~g~~vpa~~~-~~---~ 593 (792)
..+.+|++|+.. |++++|+||||||||||+|+++++.-. .++ .|||.... .+ .
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i-~~v~q~~~~~~~~~t 96 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV-GLVFQDPDDQVFSST 96 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE-EEEecChhhhhccCc
Confidence 357789999988 999999999999999999999876421 111 24444321 00 0
Q ss_pred ccc-----------------------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHH
Q 043119 594 LTD-----------------------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIG 643 (792)
Q Consensus 594 ~~~-----------------------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~ 643 (792)
+.+ ..........++.++ ++++.+...+.+|+++|+|||++|.|+.....
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~ 176 (274)
T PRK13647 97 VWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQET 176 (274)
T ss_pred HHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHH
Confidence 000 000001123344444 44555555679999999999999999998888
Q ss_pred HHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 644 LLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 644 l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+. .++..+.+. +.++|++||+++.+.
T Consensus 177 l~-~~l~~~~~~--g~tili~tH~~~~~~ 202 (274)
T PRK13647 177 LM-EILDRLHNQ--GKTVIVATHDVDLAA 202 (274)
T ss_pred HH-HHHHHHHHC--CCEEEEEeCCHHHHH
Confidence 84 577777654 679999999999874
No 163
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.40 E-value=1.7e-12 Score=136.43 Aligned_cols=131 Identities=15% Similarity=0.180 Sum_probs=86.4
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hcC-ccccCCceee---ec
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------------HIG-SFVPADAATV---GL 594 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------------q~g-~~vpa~~~~~---~~ 594 (792)
..+.++++|+.. |++++|+||||||||||+|+++++.-.. ..+ .|+|.....+ .+
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 97 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTV 97 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcH
Confidence 457789999987 9999999999999999999998764211 111 1233321100 00
Q ss_pred cc----c----------------------------------------cchhhccchhHH-HHHHHHHHHHhCCCCeEEEE
Q 043119 595 TD----S----------------------------------------KHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLL 629 (792)
Q Consensus 595 ~~----~----------------------------------------~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvll 629 (792)
.+ . .......+.++. |.++++.+...+.+|+++|+
T Consensus 98 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 177 (255)
T PRK11300 98 IENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILML 177 (255)
T ss_pred HHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 00 0 000001122333 34555555556789999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 630 DEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 630 DE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|||++|.|+.....+ ..++..+.+.. +.++|++||+.+.+.
T Consensus 178 DEPt~~LD~~~~~~l-~~~L~~~~~~~-~~tii~~sH~~~~~~ 218 (255)
T PRK11300 178 DEPAAGLNPKETKEL-DELIAELRNEH-NVTVLLIEHDMKLVM 218 (255)
T ss_pred cCCccCCCHHHHHHH-HHHHHHHHhhc-CCEEEEEeCCHHHHH
Confidence 999999999888887 45777776532 579999999998875
No 164
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.40 E-value=1.6e-12 Score=136.84 Aligned_cols=141 Identities=13% Similarity=0.135 Sum_probs=90.7
Q ss_pred EEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH----hhcC----------------
Q 043119 524 LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL----SHIG---------------- 582 (792)
Q Consensus 524 l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l----aq~g---------------- 582 (792)
+.+++...-+ .+..+.++++|+.. |++++|+||||||||||+|+++++.-. ...|
T Consensus 13 l~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 13 IKVENLNLWY----GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred EEEeeeEEEe----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5555554432 13457789999988 999999999999999999999876421 0111
Q ss_pred -------ccccCCceeee--ccc-----cc---------------c-------------hhhccchhHH-HHHHHHHHHH
Q 043119 583 -------SFVPADAATVG--LTD-----SK---------------H-------------MTAEQSSFMI-DLHQVGMMLR 619 (792)
Q Consensus 583 -------~~vpa~~~~~~--~~~-----~~---------------~-------------~~~~~s~f~~-e~~~~~~~l~ 619 (792)
.|+|.....+. +.+ .+ . .......++. |.++++.+..
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 168 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIART 168 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHH
Confidence 13333211110 000 00 0 0001123333 4455555555
Q ss_pred hCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 620 QATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 620 ~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+.+|+++|+|||++|.|+.....+. .+++.+.+ +.++|++||+.+.+.
T Consensus 169 l~~~p~llllDEPt~~LD~~~~~~l~-~~l~~l~~---~~tiiivsH~~~~~~ 217 (258)
T PRK14268 169 LAVKPKIILFDEPTSALDPISTARIE-DLIMNLKK---DYTIVIVTHNMQQAA 217 (258)
T ss_pred HHcCCCEEEEeCCCcccCHHHHHHHH-HHHHHHhh---CCEEEEEECCHHHHH
Confidence 67899999999999999998888874 56666653 478999999998864
No 165
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.40 E-value=9.6e-13 Score=134.40 Aligned_cols=126 Identities=21% Similarity=0.166 Sum_probs=83.4
Q ss_pred eccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh----------------------cCccccCCceee---ecc
Q 043119 542 IPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH----------------------IGSFVPADAATV---GLT 595 (792)
Q Consensus 542 v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq----------------------~g~~vpa~~~~~---~~~ 595 (792)
..+|++++.. |+.++++|||||||||+||.||++--..+ +| ||....+-+ .+.
T Consensus 17 a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG-fvFQ~YALF~HmtVa 95 (345)
T COG1118 17 ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG-FVFQHYALFPHMTVA 95 (345)
T ss_pred ccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhccee-EEEechhhcccchHH
Confidence 3448888888 99999999999999999999998752211 12 222222111 111
Q ss_pred c----------------------------------ccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHH
Q 043119 596 D----------------------------------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDG 641 (792)
Q Consensus 596 ~----------------------------------~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~ 641 (792)
| .+.....+|.... ++++-+-..+-+|+++|||||+++.|..-+
T Consensus 96 ~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQr--QRVALARALA~eP~vLLLDEPf~ALDa~vr 173 (345)
T COG1118 96 DNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQR--QRVALARALAVEPKVLLLDEPFGALDAKVR 173 (345)
T ss_pred hhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHH--HHHHHHHHhhcCCCeEeecCCchhhhHHHH
Confidence 1 0011112343333 344444445889999999999999999988
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 642 IGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 642 ~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+- .-+..+.++ .+.+++|+|||.+.+.
T Consensus 174 ~~lr-~wLr~~~~~-~~~ttvfVTHD~eea~ 202 (345)
T COG1118 174 KELR-RWLRKLHDR-LGVTTVFVTHDQEEAL 202 (345)
T ss_pred HHHH-HHHHHHHHh-hCceEEEEeCCHHHHH
Confidence 8885 455556554 3689999999998874
No 166
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=1.4e-12 Score=138.96 Aligned_cols=130 Identities=18% Similarity=0.119 Sum_probs=86.6
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhc--C---------------------ccccCCce-ee---
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHI--G---------------------SFVPADAA-TV--- 592 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~--g---------------------~~vpa~~~-~~--- 592 (792)
.+.++++|+.. |++++|+||||||||||+|+++++....+. | .|+|.... .+
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 100 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGA 100 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccC
Confidence 47789999988 999999999999999999999877533210 1 23333211 00
Q ss_pred eccc--------c---------------------cchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHH
Q 043119 593 GLTD--------S---------------------KHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGI 642 (792)
Q Consensus 593 ~~~~--------~---------------------~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~ 642 (792)
.+.+ . .......+.++. +.++++.+...+.+|+++|+|||++|+|+....
T Consensus 101 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~ 180 (282)
T PRK13640 101 TVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKE 180 (282)
T ss_pred CHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHH
Confidence 0000 0 000001223333 345555555567999999999999999998888
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 643 GLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 643 ~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+. .++..+.+. .+.++|++||+++.+.
T Consensus 181 ~l~-~~l~~l~~~-~g~tvli~tH~~~~~~ 208 (282)
T PRK13640 181 QIL-KLIRKLKKK-NNLTVISITHDIDEAN 208 (282)
T ss_pred HHH-HHHHHHHHh-cCCEEEEEecCHHHHH
Confidence 885 466666543 2579999999998864
No 167
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.39 E-value=1.9e-12 Score=136.44 Aligned_cols=143 Identities=15% Similarity=0.116 Sum_probs=92.3
Q ss_pred CcEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH----hhcC--------------
Q 043119 522 PLLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL----SHIG-------------- 582 (792)
Q Consensus 522 ~~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l----aq~g-------------- 582 (792)
..+.+++....+ .+..+.++++|+.. |++++|+||||||||||+|+++++.-. ...|
T Consensus 12 ~~l~~~~l~~~~----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 12 SKIQVRNLNFYY----GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred ceEEEEEEEEEe----CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 346666666544 23457889999988 999999999999999999999877520 1112
Q ss_pred ---------ccccCCceeee--ccc--------c---------c-------c----------hhhccchhHH-HHHHHHH
Q 043119 583 ---------SFVPADAATVG--LTD--------S---------K-------H----------MTAEQSSFMI-DLHQVGM 616 (792)
Q Consensus 583 ---------~~vpa~~~~~~--~~~--------~---------~-------~----------~~~~~s~f~~-e~~~~~~ 616 (792)
.|+|.....++ +.+ . + . ......+++. |.++++.
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l 167 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCI 167 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHH
Confidence 12332211000 000 0 0 0 0011122333 4455555
Q ss_pred HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 617 MLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 617 ~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+...+.+|+++|+|||++|.|+.....+. .+++.+.+ +.++|++||+.+.+.
T Consensus 168 aral~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~---~~tiii~sH~~~~~~ 219 (260)
T PRK10744 168 ARGIAIRPEVLLLDEPCSALDPISTGRIE-ELITELKQ---DYTVVIVTHNMQQAA 219 (260)
T ss_pred HHHHHCCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhc---CCeEEEEeCCHHHHH
Confidence 55567999999999999999998877774 46666643 468999999998764
No 168
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.39 E-value=1.4e-12 Score=131.21 Aligned_cols=126 Identities=21% Similarity=0.178 Sum_probs=81.4
Q ss_pred eccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC-----------------ccccCCcee---eeccc----
Q 043119 542 IPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIG-----------------SFVPADAAT---VGLTD---- 596 (792)
Q Consensus 542 v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g-----------------~~vpa~~~~---~~~~~---- 596 (792)
+.+ ++|+.. |++++|+||||||||||+|+++++... ..| .|+|..... ..+.+
T Consensus 16 l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~ 93 (195)
T PRK13541 16 LFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP-SSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKF 93 (195)
T ss_pred EEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHH
Confidence 344 888877 999999999999999999999876421 111 123322110 00000
Q ss_pred --------------------ccchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhC
Q 043119 597 --------------------SKHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTC 655 (792)
Q Consensus 597 --------------------~~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~ 655 (792)
........+.++. |.++++.+...+.+|+++|+|||++|.|+.....+. .+++...+.
T Consensus 94 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~-~~l~~~~~~ 172 (195)
T PRK13541 94 WSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLN-NLIVMKANS 172 (195)
T ss_pred HHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhC
Confidence 0001111233443 345555555667899999999999999998877764 566554443
Q ss_pred CCCcEEEEEccChhhhh
Q 043119 656 DVPPKVLVCTHLTELLN 672 (792)
Q Consensus 656 ~~~~~~l~~TH~~~l~~ 672 (792)
+.++|++||+.+...
T Consensus 173 --~~tiii~sh~~~~i~ 187 (195)
T PRK13541 173 --GGIVLLSSHLESSIK 187 (195)
T ss_pred --CCEEEEEeCCccccc
Confidence 579999999988754
No 169
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=9.6e-13 Score=144.09 Aligned_cols=130 Identities=17% Similarity=0.122 Sum_probs=86.9
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh-------------------hcCccccCCceeeeccc---
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS-------------------HIGSFVPADAATVGLTD--- 596 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la-------------------q~g~~vpa~~~~~~~~~--- 596 (792)
..+.++++|+.. |++++|+|||||||||+||+|+++.-.. .+ .|||...+-++-..
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~i-g~v~Q~~~lfp~~tv~e 95 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDI-AMVFQNYALYPHMSVRE 95 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCE-EEEeCCccccCCCCHHH
Confidence 456779999988 9999999999999999999998874221 11 13333322111000
Q ss_pred -----------------------------ccchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHH
Q 043119 597 -----------------------------SKHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLG 646 (792)
Q Consensus 597 -----------------------------~~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~ 646 (792)
..........++. |.++++.+.+.+.+|+++|||||++|+|+.....+..
T Consensus 96 Ni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~ 175 (356)
T PRK11650 96 NMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRL 175 (356)
T ss_pred HHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 0000011123333 4455655666689999999999999999998888854
Q ss_pred HHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 647 GTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 647 ~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.++.+.+. .+.++|++||+.+.+.
T Consensus 176 -~l~~l~~~-~g~tii~vTHd~~ea~ 199 (356)
T PRK11650 176 -EIQRLHRR-LKTTSLYVTHDQVEAM 199 (356)
T ss_pred -HHHHHHHh-cCCEEEEEeCCHHHHH
Confidence 55666553 2679999999987654
No 170
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.39 E-value=1.8e-12 Score=141.76 Aligned_cols=131 Identities=18% Similarity=0.110 Sum_probs=86.6
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh------------------cCccccCCceeeecc-----
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH------------------IGSFVPADAATVGLT----- 595 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq------------------~g~~vpa~~~~~~~~----- 595 (792)
..+.++++|+.. |++++|+||||||||||||+|+++.-... .-.|||.+.+-++-.
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~en 94 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDN 94 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHH
Confidence 357789999987 99999999999999999999987642110 011333332111100
Q ss_pred --------------c-----------------ccchhhccchhHHH-HHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHH
Q 043119 596 --------------D-----------------SKHMTAEQSSFMID-LHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIG 643 (792)
Q Consensus 596 --------------~-----------------~~~~~~~~s~f~~e-~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~ 643 (792)
+ ..........++.+ .++++.+...+.+|+++|+|||++|+|+.....
T Consensus 95 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~ 174 (353)
T PRK10851 95 IAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKE 174 (353)
T ss_pred HHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHH
Confidence 0 00000011233333 345555555679999999999999999998888
Q ss_pred HHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 644 LLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 644 l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+. ..++.+.+. .+.++|++||+++.+.
T Consensus 175 l~-~~L~~l~~~-~g~tii~vTHd~~ea~ 201 (353)
T PRK10851 175 LR-RWLRQLHEE-LKFTSVFVTHDQEEAM 201 (353)
T ss_pred HH-HHHHHHHHh-cCCEEEEEeCCHHHHH
Confidence 85 466666653 2679999999998765
No 171
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.39 E-value=1.4e-12 Score=137.84 Aligned_cols=144 Identities=14% Similarity=0.101 Sum_probs=92.8
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hc
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------------HI 581 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------------q~ 581 (792)
.|.+++...-+ .+..+.++++|+.. |++++|+||||||||||||+++++.-.. ..
T Consensus 7 ~l~i~~l~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 7 RLRGEQLTLGY----GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred EEEEEEEEEEE----CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 45566554433 23467889999988 9999999999999999999998764210 00
Q ss_pred CccccCCceee---eccc---------------------------------ccchhhccchhHH-HHHHHHHHHHhCCCC
Q 043119 582 GSFVPADAATV---GLTD---------------------------------SKHMTAEQSSFMI-DLHQVGMMLRQATSQ 624 (792)
Q Consensus 582 g~~vpa~~~~~---~~~~---------------------------------~~~~~~~~s~f~~-e~~~~~~~l~~~~~~ 624 (792)
-.|+|.+...+ .+.+ ........+.++. |.++++.+...+.+|
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p 162 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQET 162 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCC
Confidence 12344332110 0000 0000011223333 345555555567899
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 625 SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 625 slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+++|+|||++|.|+.....+. .++..+.+.. +.++|++||+.+.+.
T Consensus 163 ~llllDEPt~gLD~~~~~~l~-~~L~~l~~~~-~~tiii~tH~~~~~~ 208 (265)
T PRK10253 163 AIMLLDEPTTWLDISHQIDLL-ELLSELNREK-GYTLAAVLHDLNQAC 208 (265)
T ss_pred CEEEEeCccccCCHHHHHHHH-HHHHHHHHhc-CCEEEEEeCCHHHHH
Confidence 999999999999998888885 4666666532 579999999998764
No 172
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.39 E-value=2.8e-12 Score=138.14 Aligned_cols=153 Identities=12% Similarity=0.109 Sum_probs=101.6
Q ss_pred CCCCceecCCCcEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH----hhcC----
Q 043119 512 NYMRPILTLEPLLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL----SHIG---- 582 (792)
Q Consensus 512 ~~~~P~~~~~~~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l----aq~g---- 582 (792)
.|.-|.+..+..|.+++...-+ .+..+.++++|+.. |++++|+|||||||||||++++++.-. ..-|
T Consensus 34 ~~~~~~~~~~~~l~i~nl~~~~----~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i 109 (305)
T PRK14264 34 EWTDYEFDGDAKLSVEDLDVYY----GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVEL 109 (305)
T ss_pred cccccccCCCceEEEEEEEEEe----CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEE
Confidence 5777777766678888776544 23467889999988 999999999999999999999876421 0111
Q ss_pred -------------------ccccCCceeee--ccc----c---------------------c------------------
Q 043119 583 -------------------SFVPADAATVG--LTD----S---------------------K------------------ 598 (792)
Q Consensus 583 -------------------~~vpa~~~~~~--~~~----~---------------------~------------------ 598 (792)
.|+|....-++ +.+ . .
T Consensus 110 ~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 189 (305)
T PRK14264 110 DGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDE 189 (305)
T ss_pred CCEEcccccccHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchh
Confidence 23333321000 000 0 0
Q ss_pred ---chhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 599 ---HMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 599 ---~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
........++. +.++++.+...+.+|+++|+|||++|+|+.....+. .++..+.+ +.++|++||+++.+.
T Consensus 190 ~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~-~~L~~~~~---~~tiiivtH~~~~i~ 263 (305)
T PRK14264 190 VNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIE-DLIEELAE---EYTVVVVTHNMQQAA 263 (305)
T ss_pred hhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhc---CCEEEEEEcCHHHHH
Confidence 00001122333 334555555567899999999999999998888774 56666655 358999999998865
No 173
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=1.2e-12 Score=139.50 Aligned_cols=131 Identities=16% Similarity=0.117 Sum_probs=87.7
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH---------------------hhcCccccCCce--ee--e
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL---------------------SHIGSFVPADAA--TV--G 593 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l---------------------aq~g~~vpa~~~--~~--~ 593 (792)
..+.++++|+.. |++++|+||||||||||+|+++++... .+...|+|.... .. .
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 102 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATI 102 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhcccc
Confidence 458889999988 999999999999999999999866421 011123443321 00 0
Q ss_pred ccc-----------------------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHH
Q 043119 594 LTD-----------------------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIG 643 (792)
Q Consensus 594 ~~~-----------------------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~ 643 (792)
+.+ ..........++.++ ++++.+...+.+|+++|+|||++|.|+.....
T Consensus 103 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~ 182 (280)
T PRK13633 103 VEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRRE 182 (280)
T ss_pred HHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 000 000001123344343 44555555679999999999999999999888
Q ss_pred HHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 644 LLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 644 l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+. .++..+.+. .+.++|++||+++.+.
T Consensus 183 l~-~~l~~l~~~-~g~tillvtH~~~~~~ 209 (280)
T PRK13633 183 VV-NTIKELNKK-YGITIILITHYMEEAV 209 (280)
T ss_pred HH-HHHHHHHHh-cCCEEEEEecChHHHh
Confidence 85 577777543 2679999999999864
No 174
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=1.8e-12 Score=139.31 Aligned_cols=129 Identities=12% Similarity=0.104 Sum_probs=86.6
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh---------------------------------------
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH--------------------------------------- 580 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq--------------------------------------- 580 (792)
.+.++++|+.. |++++|+||||||||||+|.++++.-...
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKI 100 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchH
Confidence 47889999988 99999999999999999999987642110
Q ss_pred -----cCccccCCc-eee---eccc-----------------------------c-cchhhccchhHH-HHHHHHHHHHh
Q 043119 581 -----IGSFVPADA-ATV---GLTD-----------------------------S-KHMTAEQSSFMI-DLHQVGMMLRQ 620 (792)
Q Consensus 581 -----~g~~vpa~~-~~~---~~~~-----------------------------~-~~~~~~~s~f~~-e~~~~~~~l~~ 620 (792)
.-.|||... ..+ .+.+ . ........+++. +.++++.+...
T Consensus 101 ~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL 180 (305)
T PRK13651 101 KEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGIL 180 (305)
T ss_pred HHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 012344321 000 0000 0 000111223343 44555555566
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 621 ATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 621 ~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+.+|+++|+|||++|.|+.....+ ..++..+.+. +.++|++||+++.+.
T Consensus 181 ~~~P~lLlLDEPt~~LD~~~~~~l-~~~l~~l~~~--g~tiiivtHd~~~~~ 229 (305)
T PRK13651 181 AMEPDFLVFDEPTAGLDPQGVKEI-LEIFDNLNKQ--GKTIILVTHDLDNVL 229 (305)
T ss_pred HhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHHC--CCEEEEEeeCHHHHH
Confidence 899999999999999999877777 4577777654 679999999998764
No 175
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.39 E-value=1.6e-12 Score=132.87 Aligned_cols=128 Identities=16% Similarity=0.130 Sum_probs=83.4
Q ss_pred ccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh------------------hcCccccCCceee---eccc----
Q 043119 543 PNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS------------------HIGSFVPADAATV---GLTD---- 596 (792)
Q Consensus 543 ~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la------------------q~g~~vpa~~~~~---~~~~---- 596 (792)
..+++++.. |++++|+||||||||||+|.++++.-.- ....|||.....+ ++.+
T Consensus 14 ~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~ 93 (213)
T TIGR01277 14 PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGL 93 (213)
T ss_pred ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHh
Confidence 347888877 9999999999999999999998764211 0112344332111 0000
Q ss_pred ---c----------------------cchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHH
Q 043119 597 ---S----------------------KHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTIN 650 (792)
Q Consensus 597 ---~----------------------~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~ 650 (792)
. +........++. |.++++.+...+.+|+++|+|||++|.|+.....+. .+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~-~~l~ 172 (213)
T TIGR01277 94 GLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEML-ALVK 172 (213)
T ss_pred HhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHH
Confidence 0 000001123333 344555555567899999999999999998888885 4666
Q ss_pred HHHhCCCCcEEEEEccChhhhh
Q 043119 651 YFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 651 ~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+.+.. +.++|++||+.+.+.
T Consensus 173 ~~~~~~-~~tii~vsh~~~~~~ 193 (213)
T TIGR01277 173 QLCSER-QRTLLMVTHHLSDAR 193 (213)
T ss_pred HHHHhc-CCEEEEEeCCHHHHH
Confidence 665432 579999999998764
No 176
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.39 E-value=1.8e-12 Score=135.11 Aligned_cols=128 Identities=17% Similarity=0.144 Sum_probs=84.8
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC----------------------ccccCCceee---e
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIG----------------------SFVPADAATV---G 593 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g----------------------~~vpa~~~~~---~ 593 (792)
..+.++++|+.. |++++|+||||+|||||||++++.... ..| .|+|.....+ .
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 93 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP-DEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLT 93 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCC
Confidence 356789999988 999999999999999999999876311 111 1233221100 0
Q ss_pred ccc-------------------------------------ccchhhccchhH-HHHHHHHHHHHhCCCCeEEEEeCCCCC
Q 043119 594 LTD-------------------------------------SKHMTAEQSSFM-IDLHQVGMMLRQATSQSLCLLDEFGKG 635 (792)
Q Consensus 594 ~~~-------------------------------------~~~~~~~~s~f~-~e~~~~~~~l~~~~~~slvllDE~~~g 635 (792)
+.+ ........+.++ +|.++++.+...+.+|+++|||||++|
T Consensus 94 v~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~ 173 (242)
T TIGR03411 94 VFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAG 173 (242)
T ss_pred HHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccC
Confidence 000 000001112233 344555555666789999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 636 TLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 636 t~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.|+.....+. .+++.+.+ +.++|++||+++.+.
T Consensus 174 LD~~~~~~l~-~~l~~~~~---~~tii~~sH~~~~~~ 206 (242)
T TIGR03411 174 MTDEETEKTA-ELLKSLAG---KHSVVVVEHDMEFVR 206 (242)
T ss_pred CCHHHHHHHH-HHHHHHhc---CCEEEEEECCHHHHH
Confidence 9998888774 56666654 368999999999875
No 177
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.39 E-value=6.6e-12 Score=126.18 Aligned_cols=124 Identities=23% Similarity=0.274 Sum_probs=75.0
Q ss_pred cceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------hcCcc--ccCCceeeeccc----------
Q 043119 544 NDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------HIGSF--VPADAATVGLTD---------- 596 (792)
Q Consensus 544 n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------q~g~~--vpa~~~~~~~~~---------- 596 (792)
.+++++.. | +++|+|||||||||++++++.+.-.. ..|.. .+.....++++-
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~ 92 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSII 92 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEE
Confidence 35555555 6 99999999999999999998664111 01111 111122222211
Q ss_pred -----------ccchhhccchhHHHHHH---HHHHHHh--CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcE
Q 043119 597 -----------SKHMTAEQSSFMIDLHQ---VGMMLRQ--ATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPK 660 (792)
Q Consensus 597 -----------~~~~~~~~s~f~~e~~~---~~~~l~~--~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~ 660 (792)
..........++.++++ ++.++.. ..+++++|+|||++|.|+.....+. .+++.+.+ +.+
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~-~~l~~~~~---~~t 168 (197)
T cd03278 93 SQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFA-RLLKEFSK---ETQ 168 (197)
T ss_pred ehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHH-HHHHHhcc---CCE
Confidence 00001112333444433 3333322 3677999999999999998888875 46666654 368
Q ss_pred EEEEccChhhhh
Q 043119 661 VLVCTHLTELLN 672 (792)
Q Consensus 661 ~l~~TH~~~l~~ 672 (792)
+|++||+++.++
T Consensus 169 iIiitH~~~~~~ 180 (197)
T cd03278 169 FIVITHRKGTME 180 (197)
T ss_pred EEEEECCHHHHh
Confidence 999999998753
No 178
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.39 E-value=1.1e-12 Score=131.51 Aligned_cols=129 Identities=18% Similarity=0.161 Sum_probs=84.3
Q ss_pred eccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh----cCccccCCcee-----e--------------ecccc
Q 043119 542 IPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH----IGSFVPADAAT-----V--------------GLTDS 597 (792)
Q Consensus 542 v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq----~g~~vpa~~~~-----~--------------~~~~~ 597 (792)
--.|++|+.+ |.+++++|||||||||+||++.++..... ++.++|-++-+ + ++.|+
T Consensus 39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds 118 (325)
T COG4586 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDS 118 (325)
T ss_pred hhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhh
Confidence 3468999999 99999999999999999999977765432 34455554211 1 11110
Q ss_pred ----c-chhhccchh------H-------------------HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHH
Q 043119 598 ----K-HMTAEQSSF------M-------------------IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGG 647 (792)
Q Consensus 598 ----~-~~~~~~s~f------~-------------------~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~ 647 (792)
+ ...-+.+.| . +|-++.-.+.....+|.+++||||+-|+|.....+|...
T Consensus 119 ~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~F 198 (325)
T COG4586 119 LEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREF 198 (325)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHH
Confidence 0 000011111 1 122222333344689999999999999999999998665
Q ss_pred HHHHHHhCCCCcEEEEEccChhhhh
Q 043119 648 TINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 648 ~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+-++-.++ ++|++.+||++.-..
T Consensus 199 lke~n~~~--~aTVllTTH~~~di~ 221 (325)
T COG4586 199 LKEYNEER--QATVLLTTHIFDDIA 221 (325)
T ss_pred HHHHHHhh--CceEEEEecchhhHH
Confidence 55554443 789999999986544
No 179
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=1.5e-12 Score=141.08 Aligned_cols=130 Identities=13% Similarity=0.086 Sum_probs=88.1
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh---h-------------------------cCccccCCcee
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS---H-------------------------IGSFVPADAAT 591 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la---q-------------------------~g~~vpa~~~~ 591 (792)
.+.+|++|+.. |++++|+|||||||||++|+++++.-.. . .-.+||.+...
T Consensus 21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 100 (326)
T PRK11022 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMT 100 (326)
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchh
Confidence 57889999998 9999999999999999999998764210 0 01234443210
Q ss_pred -e----ecc-------------c-----------------c---cchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCC
Q 043119 592 -V----GLT-------------D-----------------S---KHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEF 632 (792)
Q Consensus 592 -~----~~~-------------~-----------------~---~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~ 632 (792)
+ .+. + . +........++.+| ++++.+...+.+|+++|+|||
T Consensus 101 ~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEP 180 (326)
T PRK11022 101 SLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEP 180 (326)
T ss_pred hcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 0 000 0 0 00011123445555 445555556789999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 633 GKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 633 ~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
++|+|+.....+. .++..+.+.. +.++|++||+++++.
T Consensus 181 ts~LD~~~~~~il-~lL~~l~~~~-g~til~iTHdl~~~~ 218 (326)
T PRK11022 181 TTALDVTIQAQII-ELLLELQQKE-NMALVLITHDLALVA 218 (326)
T ss_pred CCCCCHHHHHHHH-HHHHHHHHhc-CCEEEEEeCCHHHHH
Confidence 9999998888885 5666776532 679999999999875
No 180
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=1.2e-12 Score=139.59 Aligned_cols=129 Identities=14% Similarity=0.105 Sum_probs=85.7
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh------------------------hcCccccCCce-e-e-
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS------------------------HIGSFVPADAA-T-V- 592 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la------------------------q~g~~vpa~~~-~-~- 592 (792)
.+.++++|+.. |++++|+||||||||||||+++++.... +.-.|+|.... . +
T Consensus 21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 100 (280)
T PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE 100 (280)
T ss_pred ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc
Confidence 46778999987 9999999999999999999998763110 01124444320 0 0
Q ss_pred -ecc------------cc-c------------ch-----hhccchhHHH-HHHHHHHHHhCCCCeEEEEeCCCCCCCHHH
Q 043119 593 -GLT------------DS-K------------HM-----TAEQSSFMID-LHQVGMMLRQATSQSLCLLDEFGKGTLTED 640 (792)
Q Consensus 593 -~~~------------~~-~------------~~-----~~~~s~f~~e-~~~~~~~l~~~~~~slvllDE~~~gt~~~~ 640 (792)
.+. +. + .+ ....+.++.+ .++++.+...+.+|+++|||||++|+|+..
T Consensus 101 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~ 180 (280)
T PRK13649 101 ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKG 180 (280)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 000 00 0 00 0112234444 445555555678999999999999999988
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 641 GIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 641 ~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
...+. .++..+.+. +.++|++||+++.+.
T Consensus 181 ~~~l~-~~l~~~~~~--~~tiiivsH~~~~~~ 209 (280)
T PRK13649 181 RKELM-TLFKKLHQS--GMTIVLVTHLMDDVA 209 (280)
T ss_pred HHHHH-HHHHHHHHC--CCEEEEEeccHHHHH
Confidence 87775 566666653 579999999998764
No 181
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.5e-12 Score=124.14 Aligned_cols=125 Identities=21% Similarity=0.214 Sum_probs=79.0
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhc-----Ccccc-----------------CCcee----
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHI-----GSFVP-----------------ADAAT---- 591 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~-----g~~vp-----------------a~~~~---- 591 (792)
...+-.+++|... |+++.|+||||+||||+||+++++.-...- |...+ +-+..
T Consensus 14 e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ 93 (209)
T COG4133 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTAL 93 (209)
T ss_pred cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHH
Confidence 3456667888777 999999999999999999999877522110 11110 00101
Q ss_pred ------------------------eeccc-ccchhhccchhHHHHHHHHHHHHh-CCCCeEEEEeCCCCCCCHHHHHHHH
Q 043119 592 ------------------------VGLTD-SKHMTAEQSSFMIDLHQVGMMLRQ-ATSQSLCLLDEFGKGTLTEDGIGLL 645 (792)
Q Consensus 592 ------------------------~~~~~-~~~~~~~~s~f~~e~~~~~~~l~~-~~~~slvllDE~~~gt~~~~~~~l~ 645 (792)
+++.+ .+. ...+.+.++++...+.+. ++.++|-|+|||+.+.|. .|.++.
T Consensus 94 ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dl---p~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk-~g~a~l 169 (209)
T COG4133 94 ENLHFWQRFHGSGNAATIWEALAQVGLAGLEDL---PVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDK-EGVALL 169 (209)
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHcCccccccc---chhhcchhHHHHHHHHHHHcCCCCceeecCcccccCH-HHHHHH
Confidence 11111 111 133445566555555444 589999999999999998 555554
Q ss_pred HHHHHHHHhCCCCcEEEEEccChh
Q 043119 646 GGTINYFVTCDVPPKVLVCTHLTE 669 (792)
Q Consensus 646 ~~~~~~l~~~~~~~~~l~~TH~~~ 669 (792)
.+++..-+.. +..||.+||..-
T Consensus 170 ~~l~~~H~~~--GGiVllttHq~l 191 (209)
T COG4133 170 TALMAAHAAQ--GGIVLLTTHQPL 191 (209)
T ss_pred HHHHHHHhcC--CCEEEEecCCcc
Confidence 5555443443 568999999753
No 182
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.38 E-value=1.5e-12 Score=136.13 Aligned_cols=126 Identities=15% Similarity=0.098 Sum_probs=81.7
Q ss_pred eccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC---------------------ccccCCceee---eccc
Q 043119 542 IPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIG---------------------SFVPADAATV---GLTD 596 (792)
Q Consensus 542 v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g---------------------~~vpa~~~~~---~~~~ 596 (792)
+.++++|+.. |++++|+||||||||||+|+++++... .| .|+|...... ++.+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~--~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 88 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG--SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ 88 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHH
Confidence 4678888888 999999999999999999999876411 11 2344321100 0000
Q ss_pred -----------c-----------------cchhhccchhHHHHHHH-HHHHHhCC-------CCeEEEEeCCCCCCCHHH
Q 043119 597 -----------S-----------------KHMTAEQSSFMIDLHQV-GMMLRQAT-------SQSLCLLDEFGKGTLTED 640 (792)
Q Consensus 597 -----------~-----------------~~~~~~~s~f~~e~~~~-~~~l~~~~-------~~slvllDE~~~gt~~~~ 640 (792)
. .........++.++++. +.+...+. +++++|+|||++|+|+..
T Consensus 89 nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~ 168 (248)
T PRK03695 89 YLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQ 168 (248)
T ss_pred HHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHH
Confidence 0 00011123444444443 33333343 569999999999999998
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 641 GIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 641 ~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
...+. .++..+.+. +.++|++||+.+.+.
T Consensus 169 ~~~l~-~~L~~~~~~--~~tvi~~sH~~~~~~ 197 (248)
T PRK03695 169 QAALD-RLLSELCQQ--GIAVVMSSHDLNHTL 197 (248)
T ss_pred HHHHH-HHHHHHHhC--CCEEEEEecCHHHHH
Confidence 88875 566666653 579999999998654
No 183
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=2.5e-12 Score=137.03 Aligned_cols=131 Identities=16% Similarity=0.150 Sum_probs=86.8
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh----------------------hcCccccCCce-ee---
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS----------------------HIGSFVPADAA-TV--- 592 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la----------------------q~g~~vpa~~~-~~--- 592 (792)
..+.++++|+.. |++++|+||||||||||+|.++++.-.. ....|+|.+.. .+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 98 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSA 98 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccc
Confidence 457789999988 9999999999999999999998764110 11124444321 00
Q ss_pred eccc-----------c-----c-------------chhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHH
Q 043119 593 GLTD-----------S-----K-------------HMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGI 642 (792)
Q Consensus 593 ~~~~-----------~-----~-------------~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~ 642 (792)
.+.+ + + ........++.++ ++++.+...+.+|+++|+|||++|.|+....
T Consensus 99 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~ 178 (283)
T PRK13636 99 SVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178 (283)
T ss_pred cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 0000 0 0 0001122333333 4455555557899999999999999998888
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 643 GLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 643 ~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+. .+++.+.+. .+.++|++||+++.+.
T Consensus 179 ~l~-~~l~~l~~~-~g~tillvsH~~~~~~ 206 (283)
T PRK13636 179 EIM-KLLVEMQKE-LGLTIIIATHDIDIVP 206 (283)
T ss_pred HHH-HHHHHHHHh-CCCEEEEEecCHHHHH
Confidence 775 566666653 2579999999999875
No 184
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.38 E-value=2.8e-12 Score=135.76 Aligned_cols=142 Identities=14% Similarity=0.173 Sum_probs=91.6
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH-H---hhcC---------------
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF-L---SHIG--------------- 582 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~-l---aq~g--------------- 582 (792)
.+.+++...-+ .+..+.++++|+.. |++++|+||||||||||+|+++++.. . ...|
T Consensus 21 ~l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 21 ILEVKDLSIYY----GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred eEEEEEEEEEe----CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 46666665433 23567889999988 99999999999999999999988642 1 1111
Q ss_pred --------ccccCCceee--eccc------------c-----cc-----------------hhhccchhHHHH-HHHHHH
Q 043119 583 --------SFVPADAATV--GLTD------------S-----KH-----------------MTAEQSSFMIDL-HQVGMM 617 (792)
Q Consensus 583 --------~~vpa~~~~~--~~~~------------~-----~~-----------------~~~~~s~f~~e~-~~~~~~ 617 (792)
.|+|.....+ .+.+ . +. .....+.++.++ ++++.+
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~la 176 (268)
T PRK14248 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIA 176 (268)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHH
Confidence 1232221100 0000 0 00 001122333333 445555
Q ss_pred HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 618 LRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 618 l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
...+.+|+++|+|||++|.|+.....+. .++..+.+ +.++|++||+.+.+.
T Consensus 177 ral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~---~~tiii~tH~~~~~~ 227 (268)
T PRK14248 177 RTLAMKPAVLLLDEPASALDPISNAKIE-ELITELKE---EYSIIIVTHNMQQAL 227 (268)
T ss_pred HHHhCCCCEEEEcCCCcccCHHHHHHHH-HHHHHHhc---CCEEEEEEeCHHHHH
Confidence 5557899999999999999998888884 56666654 368999999998764
No 185
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.38 E-value=2.1e-12 Score=133.52 Aligned_cols=127 Identities=13% Similarity=0.168 Sum_probs=83.9
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC---------------------ccccCCceee--eccc
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIG---------------------SFVPADAATV--GLTD 596 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g---------------------~~vpa~~~~~--~~~~ 596 (792)
.+.++++|+.. |++++|+||||||||||||++++.... +-| .|+|.....+ .+.+
T Consensus 17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~ 95 (229)
T cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP-QKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIME 95 (229)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHH
Confidence 47789999988 999999999999999999999876421 111 2333322110 0000
Q ss_pred ---------c-cch------------------------hhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHH
Q 043119 597 ---------S-KHM------------------------TAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDG 641 (792)
Q Consensus 597 ---------~-~~~------------------------~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~ 641 (792)
. ... ......++. |.++++.+...+.+|+++|+|||++|+|+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~ 175 (229)
T cd03254 96 NIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETE 175 (229)
T ss_pred HHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 0 000 000123333 33445555555899999999999999999988
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 642 IGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 642 ~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+. .++..+.+ +.++|++||+++.+.
T Consensus 176 ~~l~-~~l~~~~~---~~tii~~sh~~~~~~ 202 (229)
T cd03254 176 KLIQ-EALEKLMK---GRTSIIIAHRLSTIK 202 (229)
T ss_pred HHHH-HHHHHhcC---CCEEEEEecCHHHHh
Confidence 8875 46666643 578999999998764
No 186
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.38 E-value=1.6e-12 Score=134.67 Aligned_cols=131 Identities=15% Similarity=0.052 Sum_probs=86.6
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhc-----C-------------ccccCCceee---eccc-
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHI-----G-------------SFVPADAATV---GLTD- 596 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~-----g-------------~~vpa~~~~~---~~~~- 596 (792)
..+.++++++.. |++++|+||||+|||||+|++++..-.... | .++|.+...+ .+.+
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n 92 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFEN 92 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHH
Confidence 356788899887 999999999999999999999876532110 1 1233221111 0000
Q ss_pred ----------------------------ccchhhccchhH-HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHH
Q 043119 597 ----------------------------SKHMTAEQSSFM-IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGG 647 (792)
Q Consensus 597 ----------------------------~~~~~~~~s~f~-~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~ 647 (792)
..........++ +|.++++.+...+.+|+++|+|||++|+|+.....+. .
T Consensus 93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~-~ 171 (232)
T cd03300 93 IAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQ-L 171 (232)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-H
Confidence 000000112333 3445565566668999999999999999998888884 5
Q ss_pred HHHHHHhCCCCcEEEEEccChhhhh
Q 043119 648 TINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 648 ~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
++..+.+.. ++++|++||+.+.+.
T Consensus 172 ~l~~~~~~~-~~tiii~sh~~~~~~ 195 (232)
T cd03300 172 ELKRLQKEL-GITFVFVTHDQEEAL 195 (232)
T ss_pred HHHHHHHHc-CCEEEEEeCCHHHHH
Confidence 666666532 579999999998764
No 187
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.38 E-value=2.8e-12 Score=134.28 Aligned_cols=130 Identities=20% Similarity=0.198 Sum_probs=85.1
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH-HhhcC----------------------ccccCCceeee--
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF-LSHIG----------------------SFVPADAATVG-- 593 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~-laq~g----------------------~~vpa~~~~~~-- 593 (792)
..+.++++|+.. |++++|+||||||||||+|++++... -...| .|+|.....++
T Consensus 14 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (248)
T PRK09580 14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGV 93 (248)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccch
Confidence 346788999887 99999999999999999999988731 11111 12222211000
Q ss_pred --------c------------cc----cc----c-----h-----hhcc-chhHHHH-HHHHHHHHhCCCCeEEEEeCCC
Q 043119 594 --------L------------TD----SK----H-----M-----TAEQ-SSFMIDL-HQVGMMLRQATSQSLCLLDEFG 633 (792)
Q Consensus 594 --------~------------~~----~~----~-----~-----~~~~-s~f~~e~-~~~~~~l~~~~~~slvllDE~~ 633 (792)
. .+ .+ . + .... +.++.++ ++++.+...+.+|+++|+|||+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt 173 (248)
T PRK09580 94 SNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESD 173 (248)
T ss_pred hHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 0 00 00 0 0 0001 1344444 4455555557899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 634 KGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 634 ~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+|+|+.....+. .+++.+.+. +.++|++||+++++.
T Consensus 174 ~~LD~~~~~~l~-~~l~~l~~~--~~tiii~sH~~~~~~ 209 (248)
T PRK09580 174 SGLDIDALKIVA-DGVNSLRDG--KRSFIIVTHYQRILD 209 (248)
T ss_pred ccCCHHHHHHHH-HHHHHHHhC--CCEEEEEeCCHHHHH
Confidence 999998888875 466677654 579999999998865
No 188
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.38 E-value=3.5e-12 Score=133.70 Aligned_cols=129 Identities=12% Similarity=0.124 Sum_probs=83.8
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHH--HHh--hcC-----------------------ccccCCcee
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIV--FLS--HIG-----------------------SFVPADAAT 591 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~--~la--q~g-----------------------~~vpa~~~~ 591 (792)
..+.++++|+.. |++++|+||||||||||+|+++++. ... ..| .|+|.....
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 95 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNP 95 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCcc
Confidence 457789999888 9999999999999999999998752 110 011 123322110
Q ss_pred ee--ccc-------------cc--------c-------------hhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCC
Q 043119 592 VG--LTD-------------SK--------H-------------MTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGK 634 (792)
Q Consensus 592 ~~--~~~-------------~~--------~-------------~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~ 634 (792)
++ +.+ .+ . .......++. |.++++.+...+.+|+++|+|||++
T Consensus 96 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~ 175 (250)
T PRK14245 96 FPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPAS 175 (250)
T ss_pred CcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 00 000 00 0 0000112333 3445555555678999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 635 GTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 635 gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|+|+.....+. .+++.+.+ +.++|++||+.+.+.
T Consensus 176 ~LD~~~~~~l~-~~l~~~~~---~~tiiivtH~~~~~~ 209 (250)
T PRK14245 176 ALDPISTAKVE-ELIHELKK---DYTIVIVTHNMQQAA 209 (250)
T ss_pred cCCHHHHHHHH-HHHHHHhc---CCeEEEEeCCHHHHH
Confidence 99998888875 46666643 468999999998764
No 189
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.38 E-value=2.5e-12 Score=135.16 Aligned_cols=142 Identities=15% Similarity=0.144 Sum_probs=92.4
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh----hcC---------------
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS----HIG--------------- 582 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la----q~g--------------- 582 (792)
.+.+++..+.+ .+..+.++++|+.. |++++|+||||||||||+|+++++.-.. ..|
T Consensus 7 ~l~~~~l~~~~----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 7 IIETENLNLFY----TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred eEEEeeeEEEe----CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 46777776654 23457889999988 9999999999999999999998765321 011
Q ss_pred --------ccccCCceee--eccc-----c-----------c-c-----------------hhhccchhHHH-HHHHHHH
Q 043119 583 --------SFVPADAATV--GLTD-----S-----------K-H-----------------MTAEQSSFMID-LHQVGMM 617 (792)
Q Consensus 583 --------~~vpa~~~~~--~~~~-----~-----------~-~-----------------~~~~~s~f~~e-~~~~~~~ 617 (792)
.|+|.+...+ .+.+ . + . .....+.++.+ .++++.+
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~la 162 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIA 162 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHH
Confidence 1222221100 0000 0 0 0 00011233333 3445555
Q ss_pred HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 618 LRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 618 l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
...+.+|+++|+|||++|+|+.....+. .++..+.+ +.++|++||+.+.+.
T Consensus 163 ral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~---~~tvii~sH~~~~~~ 213 (254)
T PRK14273 163 RTLAIEPNVILMDEPTSALDPISTGKIE-ELIINLKE---SYTIIIVTHNMQQAG 213 (254)
T ss_pred HHHHcCCCEEEEeCCCcccCHHHHHHHH-HHHHHHhc---CCEEEEEeCCHHHHH
Confidence 5557899999999999999998888875 46666643 468999999999864
No 190
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.38 E-value=1.8e-12 Score=136.32 Aligned_cols=129 Identities=15% Similarity=0.109 Sum_probs=83.5
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhc-----C--ccccCCce---eeec------------cc-
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHI-----G--SFVPADAA---TVGL------------TD- 596 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~-----g--~~vpa~~~---~~~~------------~~- 596 (792)
.+.++++|+.. |++++|+||||||||||+|+++++...... | .+++.... .+++ .+
T Consensus 38 ~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~ 117 (264)
T PRK13546 38 FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKR 117 (264)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCH
Confidence 45678888887 999999999999999999999876432110 0 01111100 0000 00
Q ss_pred ----------------ccchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCc
Q 043119 597 ----------------SKHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPP 659 (792)
Q Consensus 597 ----------------~~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~ 659 (792)
..........++. +.++++.+...+.+|+++|||||++|.|+.....+. .++..+.+. +.
T Consensus 118 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~-~~L~~~~~~--g~ 194 (264)
T PRK13546 118 KEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCL-DKIYEFKEQ--NK 194 (264)
T ss_pred HHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHH-HHHHHHHHC--CC
Confidence 0001111223333 445555566667899999999999999998877775 455566553 67
Q ss_pred EEEEEccChhhhh
Q 043119 660 KVLVCTHLTELLN 672 (792)
Q Consensus 660 ~~l~~TH~~~l~~ 672 (792)
++|++||+.+.+.
T Consensus 195 tiIiisH~~~~i~ 207 (264)
T PRK13546 195 TIFFVSHNLGQVR 207 (264)
T ss_pred EEEEEcCCHHHHH
Confidence 9999999998765
No 191
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.37 E-value=1.2e-12 Score=135.44 Aligned_cols=128 Identities=14% Similarity=0.113 Sum_probs=83.7
Q ss_pred ccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh---hcC-------------------ccccCCce--e---eec
Q 043119 543 PNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS---HIG-------------------SFVPADAA--T---VGL 594 (792)
Q Consensus 543 ~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la---q~g-------------------~~vpa~~~--~---~~~ 594 (792)
.++++|+.. |++++|+||||||||||+|+++++.-.. .-| .|+|.+.. . +.+
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~ 81 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTM 81 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCH
Confidence 467888887 9999999999999999999999875430 111 13333221 0 000
Q ss_pred cc------------c---c-----------------chhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHH
Q 043119 595 TD------------S---K-----------------HMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDG 641 (792)
Q Consensus 595 ~~------------~---~-----------------~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~ 641 (792)
.+ . + ......+.++. |.++++.+...+.+|+++|||||++|.|+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~ 161 (230)
T TIGR02770 82 GNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQ 161 (230)
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHH
Confidence 00 0 0 00111223333 44555555556789999999999999999887
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 642 IGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 642 ~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+. .++..+.+. .+.++|++||+++.+.
T Consensus 162 ~~l~-~~l~~~~~~-~~~tiii~sH~~~~~~ 190 (230)
T TIGR02770 162 ARVL-KLLRELRQL-FGTGILLITHDLGVVA 190 (230)
T ss_pred HHHH-HHHHHHHHh-cCCEEEEEeCCHHHHH
Confidence 7774 466666543 1579999999998764
No 192
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.37 E-value=3.3e-12 Score=129.23 Aligned_cols=131 Identities=14% Similarity=0.046 Sum_probs=82.4
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--hhcC------ccccC----Cceeeeccc---------
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--SHIG------SFVPA----DAATVGLTD--------- 596 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--aq~g------~~vpa----~~~~~~~~~--------- 596 (792)
+..+..+++|+.. |++++|+||||||||||+++++++.-. ...| ..+.. ....++++.
T Consensus 19 ~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 98 (202)
T cd03233 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTL 98 (202)
T ss_pred CceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCC
Confidence 3456778999888 999999999999999999999887541 1222 11100 001121111
Q ss_pred --ccc--------hhhccchhH-HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEE-
Q 043119 597 --SKH--------MTAEQSSFM-IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVC- 664 (792)
Q Consensus 597 --~~~--------~~~~~s~f~-~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~- 664 (792)
.+. .....+.++ +|.++++.+...+.+|+++|+|||++|.|+.....+. .+++.+.+.. +.+++++
T Consensus 99 tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~-~~t~ii~~ 176 (202)
T cd03233 99 TVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEIL-KCIRTMADVL-KTTTFVSL 176 (202)
T ss_pred cHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhC-CCEEEEEE
Confidence 010 111223333 3445566666668999999999999999998888875 5666766532 3455554
Q ss_pred ccChhhh
Q 043119 665 THLTELL 671 (792)
Q Consensus 665 TH~~~l~ 671 (792)
||+.+.+
T Consensus 177 ~h~~~~~ 183 (202)
T cd03233 177 YQASDEI 183 (202)
T ss_pred cCCHHHH
Confidence 5554444
No 193
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.37 E-value=2e-12 Score=136.73 Aligned_cols=131 Identities=20% Similarity=0.166 Sum_probs=84.4
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh----------------------------hcCccccCCce
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS----------------------------HIGSFVPADAA 590 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la----------------------------q~g~~vpa~~~ 590 (792)
..+..+++|+.. |++++|+||||||||||||+++++.-.. ....|+|....
T Consensus 14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~ 93 (272)
T PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ 93 (272)
T ss_pred EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC
Confidence 346778999888 9999999999999999999998764321 01123333311
Q ss_pred e---eeccc----c---c--------------------------chhhccchhHHHHH-HHHHHHHhC---------CCC
Q 043119 591 T---VGLTD----S---K--------------------------HMTAEQSSFMIDLH-QVGMMLRQA---------TSQ 624 (792)
Q Consensus 591 ~---~~~~~----~---~--------------------------~~~~~~s~f~~e~~-~~~~~l~~~---------~~~ 624 (792)
. ..+.+ . . ......++++.+++ +++.+...+ .+|
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p 173 (272)
T PRK13547 94 PAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPP 173 (272)
T ss_pred CCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCC
Confidence 0 00000 0 0 00011233444443 344334445 489
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 625 SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 625 slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+++|||||++|.|+.....+. .++..+.+. .+.++|++||+.+.+.
T Consensus 174 ~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~-~~~tviiisH~~~~~~ 219 (272)
T PRK13547 174 RYLLLDEPTAALDLAHQHRLL-DTVRRLARD-WNLGVLAIVHDPNLAA 219 (272)
T ss_pred CEEEEcCccccCCHHHHHHHH-HHHHHHHHh-cCCEEEEEECCHHHHH
Confidence 999999999999999888885 466666543 1578999999998764
No 194
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.37 E-value=3.2e-12 Score=132.62 Aligned_cols=128 Identities=14% Similarity=0.168 Sum_probs=85.1
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hcCccccCCceeee--ccc-
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------------HIGSFVPADAATVG--LTD- 596 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------------q~g~~vpa~~~~~~--~~~- 596 (792)
.+.++++|+.. |++++|+||||||||||+|.++++.... +.-.|+|.+...++ +.+
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~en 95 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAEN 95 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHH
Confidence 56778999887 9999999999999999999998775211 00123443321110 000
Q ss_pred -----c----cc---------h---------------hhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHH
Q 043119 597 -----S----KH---------M---------------TAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGI 642 (792)
Q Consensus 597 -----~----~~---------~---------------~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~ 642 (792)
. +. . .....+++. |.+++..+...+.+|+++|+|||++|+|+....
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~ 175 (234)
T cd03251 96 IAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESER 175 (234)
T ss_pred hhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 0 00 0 000123333 445555555667899999999999999998888
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 643 GLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 643 ~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+. .+++.+.+ +.++|++||+++.+.
T Consensus 176 ~l~-~~l~~~~~---~~tii~~sh~~~~~~ 201 (234)
T cd03251 176 LVQ-AALERLMK---NRTTFVIAHRLSTIE 201 (234)
T ss_pred HHH-HHHHHhcC---CCEEEEEecCHHHHh
Confidence 884 56666643 568999999998874
No 195
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.37 E-value=3.1e-12 Score=134.24 Aligned_cols=141 Identities=17% Similarity=0.130 Sum_probs=89.0
Q ss_pred EEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH-h---hcC----------------
Q 043119 524 LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL-S---HIG---------------- 582 (792)
Q Consensus 524 l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l-a---q~g---------------- 582 (792)
+.+++...-+ .+..+.++++|+.. |++++|+||||||||||+|+++++... . ..|
T Consensus 6 l~~~~l~~~~----~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 6 LQVSDLSVYY----NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred EEEEeeEEEE----CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4555554333 13457789999988 999999999999999999999875311 1 011
Q ss_pred -------ccccCCceee--eccc-------------ccc---------------------hhhccchhHH-HHHHHHHHH
Q 043119 583 -------SFVPADAATV--GLTD-------------SKH---------------------MTAEQSSFMI-DLHQVGMML 618 (792)
Q Consensus 583 -------~~vpa~~~~~--~~~~-------------~~~---------------------~~~~~s~f~~-e~~~~~~~l 618 (792)
.|||.....+ .+.+ ... .......++. |.++++.+.
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 161 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIAR 161 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHH
Confidence 1233221100 0000 000 0001122333 334455555
Q ss_pred HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 619 RQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 619 ~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+.+|+++|+|||++|.|+.....+. .+++.+.+ +.++|++||+++.+.
T Consensus 162 al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~---~~tii~~sH~~~~~~ 211 (252)
T PRK14239 162 VLATSPKIILLDEPTSALDPISAGKIE-ETLLGLKD---DYTMLLVTRSMQQAS 211 (252)
T ss_pred HHhcCCCEEEEcCCccccCHHHHHHHH-HHHHHHhh---CCeEEEEECCHHHHH
Confidence 567899999999999999998888885 56666654 368999999998654
No 196
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.37 E-value=2.3e-12 Score=135.36 Aligned_cols=143 Identities=18% Similarity=0.104 Sum_probs=90.4
Q ss_pred EEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh-----------------------
Q 043119 524 LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS----------------------- 579 (792)
Q Consensus 524 l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la----------------------- 579 (792)
+.+++....+ .+..+.++++|+.. |++++|+||||||||||||+++++.-..
T Consensus 4 l~~~~l~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 4 LQVSGLSKSY----GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred EEEeeeEEEe----CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 4555554443 12356789999988 9999999999999999999998764110
Q ss_pred ------hcCccccCCce-----eeec----------c---c-----------------c-cchhhccchhHH-HHHHHHH
Q 043119 580 ------HIGSFVPADAA-----TVGL----------T---D-----------------S-KHMTAEQSSFMI-DLHQVGM 616 (792)
Q Consensus 580 ------q~g~~vpa~~~-----~~~~----------~---~-----------------~-~~~~~~~s~f~~-e~~~~~~ 616 (792)
+.-.|+|.+.. .+.. . + . .......+.++. |.++++.
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~l 159 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQI 159 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHH
Confidence 00122332210 0000 0 0 0 000011122333 3455555
Q ss_pred HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 617 MLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 617 ~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+...+.+|+++|+|||++|.|+.....+.. +++.+.+. .+.++|++||+.+.+.
T Consensus 160 aral~~~p~vlllDEP~~~LD~~~~~~l~~-~l~~~~~~-~~~tii~vsH~~~~~~ 213 (253)
T TIGR02323 160 ARNLVTRPRLVFMDEPTGGLDVSVQARLLD-LLRGLVRD-LGLAVIIVTHDLGVAR 213 (253)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HHHHHHHh-cCCEEEEEeCCHHHHH
Confidence 566689999999999999999988888854 55555442 1579999999998875
No 197
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.37 E-value=3e-12 Score=134.17 Aligned_cols=129 Identities=15% Similarity=0.158 Sum_probs=84.8
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH----hhcC---------------------ccccCCceee-
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL----SHIG---------------------SFVPADAATV- 592 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l----aq~g---------------------~~vpa~~~~~- 592 (792)
..+.++++|+.. |++++|+||||||||||+|++++..-. ...| .|+|.....+
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~ 95 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIP 95 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCC
Confidence 457789999988 999999999999999999999887431 0111 1233221100
Q ss_pred --eccc-----cc------------------------------chhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCC
Q 043119 593 --GLTD-----SK------------------------------HMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGK 634 (792)
Q Consensus 593 --~~~~-----~~------------------------------~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~ 634 (792)
.+.+ .+ ........++.++ ++++.+...+.+|+++|+|||++
T Consensus 96 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~ 175 (250)
T PRK14247 96 NLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTA 175 (250)
T ss_pred CCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 0000 00 0001122344333 44555555678999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 635 GTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 635 gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|.|+.....+. .+++.+.+ +.++|++||+++.+.
T Consensus 176 ~LD~~~~~~l~-~~l~~~~~---~~tiii~sH~~~~~~ 209 (250)
T PRK14247 176 NLDPENTAKIE-SLFLELKK---DMTIVLVTHFPQQAA 209 (250)
T ss_pred cCCHHHHHHHH-HHHHHHhc---CCEEEEEeCCHHHHH
Confidence 99998888875 46666643 468999999998764
No 198
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=1.9e-12 Score=137.62 Aligned_cols=129 Identities=17% Similarity=0.146 Sum_probs=86.3
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH---------------------hhcCccccCCce-ee---ec
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL---------------------SHIGSFVPADAA-TV---GL 594 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l---------------------aq~g~~vpa~~~-~~---~~ 594 (792)
.+..+++|+.. |++++|+||||||||||+|.++++... .++ .|||.... .+ .+
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i-~~v~q~~~~~~~~~tv 96 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV-GLVFQNPDDQIFSPTV 96 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe-EEEecCcccccccccH
Confidence 47789999988 999999999999999999999876411 112 24444321 00 00
Q ss_pred c------------cc-----------------cchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHH
Q 043119 595 T------------DS-----------------KHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGL 644 (792)
Q Consensus 595 ~------------~~-----------------~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l 644 (792)
. +. .........++. +.++++.+...+.+|+++|+|||++|.|+.....+
T Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l 176 (277)
T PRK13652 97 EQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKEL 176 (277)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 0 00 000011122333 44555555566899999999999999999888877
Q ss_pred HHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 645 LGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 645 ~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
. .++..+.+. .+.++|++||+++.+.
T Consensus 177 ~-~~l~~l~~~-~g~tvli~tH~~~~~~ 202 (277)
T PRK13652 177 I-DFLNDLPET-YGMTVIFSTHQLDLVP 202 (277)
T ss_pred H-HHHHHHHHh-cCCEEEEEecCHHHHH
Confidence 4 566666653 2579999999998864
No 199
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.37 E-value=1.9e-12 Score=149.15 Aligned_cols=129 Identities=13% Similarity=0.006 Sum_probs=86.9
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh---------------------hcCccccCCce-------
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS---------------------HIGSFVPADAA------- 590 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la---------------------q~g~~vpa~~~------- 590 (792)
..+.++++|+.. |++++|+||||||||||||+++++.... .+ .++|....
T Consensus 16 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i-~~~~q~~~~~~~~~~ 94 (490)
T PRK10938 16 TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV-SDEWQRNNTDMLSPG 94 (490)
T ss_pred eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh-ceeccCcchhhcccc
Confidence 347789999988 9999999999999999999998764210 01 12332210
Q ss_pred ----eeeccc---------------------ccchhhccchhHHHHH-HHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHH
Q 043119 591 ----TVGLTD---------------------SKHMTAEQSSFMIDLH-QVGMMLRQATSQSLCLLDEFGKGTLTEDGIGL 644 (792)
Q Consensus 591 ----~~~~~~---------------------~~~~~~~~s~f~~e~~-~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l 644 (792)
...+.+ ........++++.+++ +++.+...+.+|+++|+|||++|.|+.....+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 174 (490)
T PRK10938 95 EDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQL 174 (490)
T ss_pred hhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH
Confidence 000000 0001112345555554 45555555789999999999999999888888
Q ss_pred HHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 645 LGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 645 ~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
. .+++.+.+. +.++|++||+.+.+.
T Consensus 175 ~-~~l~~~~~~--g~tvii~tH~~~~~~ 199 (490)
T PRK10938 175 A-ELLASLHQS--GITLVLVLNRFDEIP 199 (490)
T ss_pred H-HHHHHHHhc--CCeEEEEeCCHHHHH
Confidence 5 577777654 579999999998754
No 200
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=1.8e-12 Score=137.36 Aligned_cols=144 Identities=19% Similarity=0.126 Sum_probs=91.5
Q ss_pred EEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH---------------------hhc
Q 043119 524 LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL---------------------SHI 581 (792)
Q Consensus 524 l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l---------------------aq~ 581 (792)
+.+++....+-. ....+.++++|+.. |++++|+||||||||||+|+++++.-. .++
T Consensus 8 l~i~~l~~~~~~--~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 8 IVFKNVSFQYQS--DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred EEEEEEEEEcCC--CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 455555443310 11346789999988 999999999999999999999876421 011
Q ss_pred CccccCCce-eee---cc------------c-----------------ccchhhccchhHH-HHHHHHHHHHhCCCCeEE
Q 043119 582 GSFVPADAA-TVG---LT------------D-----------------SKHMTAEQSSFMI-DLHQVGMMLRQATSQSLC 627 (792)
Q Consensus 582 g~~vpa~~~-~~~---~~------------~-----------------~~~~~~~~s~f~~-e~~~~~~~l~~~~~~slv 627 (792)
.|+|.... .+. +. + ..........++. |.++++.+...+.+|+++
T Consensus 86 -~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 164 (269)
T PRK13648 86 -GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVI 164 (269)
T ss_pred -eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 23443321 000 00 0 0000011223333 445555555667999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 628 LLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 628 llDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|+|||++|.|+.....+. .++..+.+. .+.++|++||+.+.+.
T Consensus 165 lLDEPt~~LD~~~~~~l~-~~L~~~~~~-~~~tiiivtH~~~~~~ 207 (269)
T PRK13648 165 ILDEATSMLDPDARQNLL-DLVRKVKSE-HNITIISITHDLSEAM 207 (269)
T ss_pred EEeCCcccCCHHHHHHHH-HHHHHHHHh-cCCEEEEEecCchHHh
Confidence 999999999998888885 466666543 2579999999998764
No 201
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.37 E-value=4.4e-12 Score=134.11 Aligned_cols=142 Identities=13% Similarity=0.141 Sum_probs=92.0
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH----hhcC---------------
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL----SHIG--------------- 582 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l----aq~g--------------- 582 (792)
.+.+++...-+ .+..+.++++|+.. |++++|+||||||||||||+++++... ..-|
T Consensus 20 ~l~~~nl~~~~----~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 20 ALSTKDLHVYY----GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred EEEEeeEEEEE----CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 45666654433 23567889999998 999999999999999999999987531 0111
Q ss_pred --------ccccCCceeee--ccc--------c---------c-----------------chhhccchhHHH-HHHHHHH
Q 043119 583 --------SFVPADAATVG--LTD--------S---------K-----------------HMTAEQSSFMID-LHQVGMM 617 (792)
Q Consensus 583 --------~~vpa~~~~~~--~~~--------~---------~-----------------~~~~~~s~f~~e-~~~~~~~ 617 (792)
.|+|.....++ +.+ . . ........++.+ .++++.+
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~la 175 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIA 175 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHH
Confidence 23333211110 000 0 0 000112234433 4445555
Q ss_pred HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 618 LRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 618 l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
...+.+|+++|+|||++|.|+.....+. .++..+.+ +.++|++||+.+.+.
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~---~~tiii~tH~~~~~~ 226 (267)
T PRK14237 176 RAIAVKPDILLMDEPASALDPISTMQLE-ETMFELKK---NYTIIIVTHNMQQAA 226 (267)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhc---CCEEEEEecCHHHHH
Confidence 5567899999999999999998877775 46666643 468999999998764
No 202
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.37 E-value=3.4e-12 Score=133.90 Aligned_cols=129 Identities=13% Similarity=0.156 Sum_probs=84.4
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH--H--hhcC-----------------------ccccCCcee
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF--L--SHIG-----------------------SFVPADAAT 591 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~--l--aq~g-----------------------~~vpa~~~~ 591 (792)
..+.++++|+.. |++++|+||||||||||+|+++++.- . ...| .|+|.+...
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP 96 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence 457889999988 99999999999999999999988742 1 0111 123332111
Q ss_pred ee---c-------------ccc----cc-----------------hhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCC
Q 043119 592 VG---L-------------TDS----KH-----------------MTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFG 633 (792)
Q Consensus 592 ~~---~-------------~~~----~~-----------------~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~ 633 (792)
++ + .+. +. .......++. |.++++.+...+.+|+++|+|||+
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~ 176 (252)
T PRK14256 97 FPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPA 176 (252)
T ss_pred CCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 00 0 000 00 0001122333 334455555557899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 634 KGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 634 ~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+|.|+.....+. .+++.+.+ +.++|++||+.+.+.
T Consensus 177 ~gLD~~~~~~l~-~~l~~~~~---~~tiiivsH~~~~~~ 211 (252)
T PRK14256 177 SALDPISTLKIE-ELIEELKE---KYTIIIVTHNMQQAA 211 (252)
T ss_pred ccCCHHHHHHHH-HHHHHHHh---CCcEEEEECCHHHHH
Confidence 999998888775 56666654 358999999998764
No 203
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=2.1e-12 Score=133.68 Aligned_cols=126 Identities=15% Similarity=0.102 Sum_probs=81.8
Q ss_pred ceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh------------------hcCccccCCceee---eccc------
Q 043119 545 DTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS------------------HIGSFVPADAATV---GLTD------ 596 (792)
Q Consensus 545 ~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la------------------q~g~~vpa~~~~~---~~~~------ 596 (792)
+++|+.. |++++|+||||||||||+|.++++.... ..-.|+|.....+ .+.+
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 96 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGL 96 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccc
Confidence 7888877 9999999999999999999998764210 0012334332110 0000
Q ss_pred -c----c------------------chhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 043119 597 -S----K------------------HMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYF 652 (792)
Q Consensus 597 -~----~------------------~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l 652 (792)
. . ........++. |.++++.+...+.+|+++|+|||++|.|+.....+. .++..+
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~-~~l~~~ 175 (232)
T PRK10771 97 NPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEML-TLVSQV 175 (232)
T ss_pred ccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence 0 0 00001122333 345555555668999999999999999998888875 466666
Q ss_pred HhCCCCcEEEEEccChhhhh
Q 043119 653 VTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 653 ~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+.. +.++|++||+.+.+.
T Consensus 176 ~~~~-~~tiii~sH~~~~~~ 194 (232)
T PRK10771 176 CQER-QLTLLMVSHSLEDAA 194 (232)
T ss_pred HHhc-CCEEEEEECCHHHHH
Confidence 5421 579999999999764
No 204
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.37 E-value=3.4e-12 Score=134.36 Aligned_cols=141 Identities=13% Similarity=0.154 Sum_probs=89.4
Q ss_pred EEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh----hcC----------------
Q 043119 524 LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS----HIG---------------- 582 (792)
Q Consensus 524 l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la----q~g---------------- 582 (792)
+.+++...-+ .+..+.++++|+.. |++++|+||||||||||||.++++.-.. .-|
T Consensus 5 l~i~~v~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 5 IDVKDLNIYY----GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred EEEeeEEEEE----CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4555554433 12356789999987 9999999999999999999999865310 111
Q ss_pred -------ccccCCceee---eccc---------c---c-----c-----------------hhhccchhHH-HHHHHHHH
Q 043119 583 -------SFVPADAATV---GLTD---------S---K-----H-----------------MTAEQSSFMI-DLHQVGMM 617 (792)
Q Consensus 583 -------~~vpa~~~~~---~~~~---------~---~-----~-----------------~~~~~s~f~~-e~~~~~~~ 617 (792)
.|+|.....+ .+.+ . . . .......++. |.++++.+
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 160 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIA 160 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 1222211100 0000 0 0 0 0001122333 33455555
Q ss_pred HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 618 LRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 618 l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
...+.+|+++|+|||++|.|+.....+. .++..+.+ +.++|++||+.+.+.
T Consensus 161 ral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~---~~tviivsH~~~~~~ 211 (258)
T PRK14241 161 RAIAVEPDVLLMDEPCSALDPISTLAIE-DLINELKQ---DYTIVIVTHNMQQAA 211 (258)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhc---CCEEEEEecCHHHHH
Confidence 5567899999999999999998888874 56666653 368999999998764
No 205
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.37 E-value=4.3e-12 Score=133.67 Aligned_cols=142 Identities=16% Similarity=0.176 Sum_probs=90.7
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH-h---hcC------c--------
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL-S---HIG------S-------- 583 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l-a---q~g------~-------- 583 (792)
.+.+++...-+ .+..+.++++|+.. |++++|+||||||||||+|++++..-. . ..| .
T Consensus 12 ~l~i~~l~~~~----~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 12 VYQINGMNLWY----GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred eEEEeeEEEEE----CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence 45666665433 13457889999988 999999999999999999999876531 0 112 1
Q ss_pred ---------cccCCceeee--ccc-----cc------------c-----------------hhhccchhHH-HHHHHHHH
Q 043119 584 ---------FVPADAATVG--LTD-----SK------------H-----------------MTAEQSSFMI-DLHQVGMM 617 (792)
Q Consensus 584 ---------~vpa~~~~~~--~~~-----~~------------~-----------------~~~~~s~f~~-e~~~~~~~ 617 (792)
|+|.....+. +.+ .+ . .....+.++. |.++++.+
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~la 167 (259)
T PRK14274 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIA 167 (259)
T ss_pred HHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHH
Confidence 2222211000 000 00 0 0001122333 33445555
Q ss_pred HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 618 LRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 618 l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
...+.+|+++|||||++|.|+.....+. .++..+.+ +.++|++||+.+.+.
T Consensus 168 ral~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~---~~tiiivtH~~~~~~ 218 (259)
T PRK14274 168 RALATNPDVLLMDEPTSALDPVSTRKIE-ELILKLKE---KYTIVIVTHNMQQAA 218 (259)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHhc---CCEEEEEEcCHHHHH
Confidence 5567899999999999999998888774 56666654 468999999998764
No 206
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=2e-12 Score=137.24 Aligned_cols=129 Identities=15% Similarity=0.137 Sum_probs=85.2
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh----------------------hcCccccCCce-ee---e
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS----------------------HIGSFVPADAA-TV---G 593 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la----------------------q~g~~vpa~~~-~~---~ 593 (792)
.+..+++|+.. |++++|+||||||||||+|+++++.-.. +.-.|+|.+.. .+ .
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 95 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPT 95 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhcccc
Confidence 35678899888 9999999999999999999998653210 01123444321 00 0
Q ss_pred ccc------c----------c-------------chhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHH
Q 043119 594 LTD------S----------K-------------HMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIG 643 (792)
Q Consensus 594 ~~~------~----------~-------------~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~ 643 (792)
+.+ . + ......+.++. |.++++.+...+.+|+++|+|||++|.|+.....
T Consensus 96 v~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~ 175 (275)
T PRK13639 96 VEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ 175 (275)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 000 0 0 00001123333 3344555555679999999999999999998888
Q ss_pred HHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 644 LLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 644 l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+. .++..+.+. +.++|++||+++.+.
T Consensus 176 l~-~~l~~l~~~--~~til~vtH~~~~~~ 201 (275)
T PRK13639 176 IM-KLLYDLNKE--GITIIISTHDVDLVP 201 (275)
T ss_pred HH-HHHHHHHHC--CCEEEEEecCHHHHH
Confidence 85 466666653 679999999999865
No 207
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.36 E-value=3.8e-12 Score=134.66 Aligned_cols=142 Identities=12% Similarity=0.106 Sum_probs=91.9
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH----hhcC---------------
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL----SHIG--------------- 582 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l----aq~g--------------- 582 (792)
.|.+++...-+ .+..+.++++|+.. |++++|+||||||||||||+++++... ...|
T Consensus 19 ~l~~~nl~~~~----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 19 KMRARDVSVFY----GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred eEEEEeEEEEE----CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 45566555433 23457889999988 999999999999999999999887532 1112
Q ss_pred --------ccccCCceee--eccc-----c----------c------------ch--------hhccchhHH-HHHHHHH
Q 043119 583 --------SFVPADAATV--GLTD-----S----------K------------HM--------TAEQSSFMI-DLHQVGM 616 (792)
Q Consensus 583 --------~~vpa~~~~~--~~~~-----~----------~------------~~--------~~~~s~f~~-e~~~~~~ 616 (792)
.|+|.....+ .+.+ . . .+ ......++. |.++++.
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 174 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCI 174 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHH
Confidence 1222221100 0000 0 0 00 001123333 3455555
Q ss_pred HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 617 MLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 617 ~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+...+.+|+++|||||++|.|+.....+. .+++.+.+ +.++|++||+++.+.
T Consensus 175 aral~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~l~~---~~tiiivtH~~~~~~ 226 (267)
T PRK14235 175 ARAIAVSPEVILMDEPCSALDPIATAKVE-ELIDELRQ---NYTIVIVTHSMQQAA 226 (267)
T ss_pred HHHHHcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHhc---CCeEEEEEcCHHHHH
Confidence 55667899999999999999998888774 56666654 368999999998874
No 208
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=1.5e-12 Score=139.13 Aligned_cols=130 Identities=14% Similarity=0.072 Sum_probs=87.1
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh------------------------hcCccccCCce-ee--
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS------------------------HIGSFVPADAA-TV-- 592 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la------------------------q~g~~vpa~~~-~~-- 592 (792)
.+.++++|+.. |++++|+||||||||||+|.++++.... +.-.|||.... .+
T Consensus 21 ~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 100 (290)
T PRK13634 21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFE 100 (290)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhh
Confidence 47889999998 9999999999999999999998764211 01123443310 00
Q ss_pred -ecc------------c-----------------c-cchhhccchhHHH-HHHHHHHHHhCCCCeEEEEeCCCCCCCHHH
Q 043119 593 -GLT------------D-----------------S-KHMTAEQSSFMID-LHQVGMMLRQATSQSLCLLDEFGKGTLTED 640 (792)
Q Consensus 593 -~~~------------~-----------------~-~~~~~~~s~f~~e-~~~~~~~l~~~~~~slvllDE~~~gt~~~~ 640 (792)
.+. + . .......+.++.+ .++++.+...+.+|+++|+|||++|+|+..
T Consensus 101 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~ 180 (290)
T PRK13634 101 ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG 180 (290)
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 000 0 0 0001112334433 444555555678999999999999999988
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 641 GIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 641 ~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
...+. .++..+.+. .+.++|++||+++.+.
T Consensus 181 ~~~l~-~~L~~l~~~-~g~tviiitHd~~~~~ 210 (290)
T PRK13634 181 RKEMM-EMFYKLHKE-KGLTTVLVTHSMEDAA 210 (290)
T ss_pred HHHHH-HHHHHHHHh-cCCEEEEEeCCHHHHH
Confidence 88874 567777653 2579999999999865
No 209
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.36 E-value=3e-12 Score=134.43 Aligned_cols=130 Identities=13% Similarity=0.066 Sum_probs=86.1
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH------h----------------hcCccccCCce-eeec--
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL------S----------------HIGSFVPADAA-TVGL-- 594 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l------a----------------q~g~~vpa~~~-~~~~-- 594 (792)
.+.++++|+.. |++++|+||||||||||+|+++++.-. + +.-.|||.+.. .+..
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~ 96 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLH 96 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccc
Confidence 46778999988 999999999999999999999877532 1 00113343321 0000
Q ss_pred ------------cc---c-----------c------chhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHH
Q 043119 595 ------------TD---S-----------K------HMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDG 641 (792)
Q Consensus 595 ------------~~---~-----------~------~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~ 641 (792)
.. . . ......+.++. |.++++.+...+.+|+++|+|||++|.|+...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~ 176 (254)
T PRK10418 97 TMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQ 176 (254)
T ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHH
Confidence 00 0 0 00111233443 44555555556799999999999999999887
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 642 IGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 642 ~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+. .+++.+.+.. +.++|++||+++.+.
T Consensus 177 ~~l~-~~L~~~~~~~-g~til~~sH~~~~~~ 205 (254)
T PRK10418 177 ARIL-DLLESIVQKR-ALGMLLVTHDMGVVA 205 (254)
T ss_pred HHHH-HHHHHHHHhc-CcEEEEEecCHHHHH
Confidence 7774 5666665432 579999999998764
No 210
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=2.3e-12 Score=142.49 Aligned_cols=129 Identities=16% Similarity=0.140 Sum_probs=85.8
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh-------------------------hcCccccCCceeee-
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS-------------------------HIGSFVPADAATVG- 593 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la-------------------------q~g~~vpa~~~~~~- 593 (792)
.+.++++|+.. |++++|+||||||||||||+++++.... ++ .|||.....++
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~i-gyv~Q~~~l~~~ 120 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKI-AMVFQSFALMPH 120 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCE-EEEECCCcCCCC
Confidence 35678899988 9999999999999999999998764210 12 23443321110
Q ss_pred --ccc-----------------------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHH
Q 043119 594 --LTD-----------------------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDG 641 (792)
Q Consensus 594 --~~~-----------------------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~ 641 (792)
+.+ ........+.++.++ ++++.+...+.+|+++|||||++|+|+...
T Consensus 121 ~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r 200 (400)
T PRK10070 121 MTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIR 200 (400)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence 000 000011123344444 445555556899999999999999999888
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 642 IGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 642 ~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+. .++..+.+.. +.++|++||+.+.+.
T Consensus 201 ~~l~-~~L~~l~~~~-g~TIIivTHd~~~~~ 229 (400)
T PRK10070 201 TEMQ-DELVKLQAKH-QRTIVFISHDLDEAM 229 (400)
T ss_pred HHHH-HHHHHHHHHC-CCeEEEEECCHHHHH
Confidence 8885 4666665432 579999999998764
No 211
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=1.9e-12 Score=138.23 Aligned_cols=128 Identities=15% Similarity=0.143 Sum_probs=86.4
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh-------------------------hcCccccCCc--eee
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS-------------------------HIGSFVPADA--ATV 592 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la-------------------------q~g~~vpa~~--~~~ 592 (792)
.+.++++|+.. |++++|+||||||||||+|.++++.... .+ .||+... ..+
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i-g~v~q~~~~~l~ 98 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKV-GVVFQFPESQLF 98 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhE-EEEecCcchhcc
Confidence 47789999998 9999999999999999999998764211 11 1333321 000
Q ss_pred --eccc-----c------------c--------ch-----hhccchhH-HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHH
Q 043119 593 --GLTD-----S------------K--------HM-----TAEQSSFM-IDLHQVGMMLRQATSQSLCLLDEFGKGTLTE 639 (792)
Q Consensus 593 --~~~~-----~------------~--------~~-----~~~~s~f~-~e~~~~~~~l~~~~~~slvllDE~~~gt~~~ 639 (792)
.+.+ . + .+ ......++ ++.++++.+...+.+|+++|||||++|.|+.
T Consensus 99 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~ 178 (288)
T PRK13643 99 EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK 178 (288)
T ss_pred cchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHH
Confidence 0000 0 0 00 01112233 3445555555667899999999999999998
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 640 DGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 640 ~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
....+. .+++.+.+. +.++|++||+++.+.
T Consensus 179 ~~~~l~-~~l~~l~~~--g~til~vtHd~~~~~ 208 (288)
T PRK13643 179 ARIEMM-QLFESIHQS--GQTVVLVTHLMDDVA 208 (288)
T ss_pred HHHHHH-HHHHHHHHC--CCEEEEEecCHHHHH
Confidence 888775 577777654 679999999998764
No 212
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.36 E-value=3.8e-12 Score=133.61 Aligned_cols=142 Identities=22% Similarity=0.239 Sum_probs=90.7
Q ss_pred EEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHH-HHhhcC-------------------
Q 043119 524 LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIV-FLSHIG------------------- 582 (792)
Q Consensus 524 l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~-~laq~g------------------- 582 (792)
+.+++....+ .+..+.++++|+.. |++++|+||||||||||+|+++++. .-..-|
T Consensus 8 l~~~~l~~~~----~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 8 LEIKNLHASV----NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred EEEEeEEEEe----CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 5555554433 13457889999988 9999999999999999999998852 111112
Q ss_pred --c-cccCCceeee---cc-------------------c-----------------c-cchhhcc-chhHHH-HHHHHHH
Q 043119 583 --S-FVPADAATVG---LT-------------------D-----------------S-KHMTAEQ-SSFMID-LHQVGMM 617 (792)
Q Consensus 583 --~-~vpa~~~~~~---~~-------------------~-----------------~-~~~~~~~-s~f~~e-~~~~~~~ 617 (792)
. ++|.....++ .. + . ....... ..++.+ .++++.+
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la 163 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEIL 163 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHH
Confidence 1 1222110000 00 0 0 0000001 124433 4455555
Q ss_pred HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 618 LRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 618 l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
...+.+|+++|+|||++|.|+.....+. .++..+.+. +.++|++||+.+++.
T Consensus 164 ~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~--g~tii~~tH~~~~~~ 215 (252)
T CHL00131 164 QMALLDSELAILDETDSGLDIDALKIIA-EGINKLMTS--ENSIILITHYQRLLD 215 (252)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHHhC--CCEEEEEecCHHHHH
Confidence 5567899999999999999998888885 566666654 579999999998865
No 213
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.36 E-value=3.9e-12 Score=133.33 Aligned_cols=141 Identities=14% Similarity=0.118 Sum_probs=88.6
Q ss_pred EEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH----hhcC----------------
Q 043119 524 LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL----SHIG---------------- 582 (792)
Q Consensus 524 l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l----aq~g---------------- 582 (792)
|.+++....+ .+..+.++++|+.. |++++|+||||||||||||+++++.-. ...|
T Consensus 4 l~~~~l~~~~----~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 4 IEIENFSAYY----GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred EEEEeeEEEe----CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4455554333 13457789999988 999999999999999999999875421 0111
Q ss_pred -------ccccCCceeee--ccc------------cc-c---------------------hhhccchhHH-HHHHHHHHH
Q 043119 583 -------SFVPADAATVG--LTD------------SK-H---------------------MTAEQSSFMI-DLHQVGMML 618 (792)
Q Consensus 583 -------~~vpa~~~~~~--~~~------------~~-~---------------------~~~~~s~f~~-e~~~~~~~l 618 (792)
.|+|.....+. +.+ .+ . .......++. +.++++.+.
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~ 159 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIAR 159 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHH
Confidence 12222211000 000 00 0 0001122333 344555555
Q ss_pred HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 619 RQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 619 ~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+.+|+++|+|||++|.|+.....+. .++..+.+ +.++|++||+.+.+.
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~---~~tili~sH~~~~~~ 209 (250)
T PRK14262 160 ALAVEPEVILLDEPTSALDPIATQRIE-KLLEELSE---NYTIVIVTHNIGQAI 209 (250)
T ss_pred HHhCCCCEEEEeCCccccCHHHHHHHH-HHHHHHhc---CcEEEEEeCCHHHHH
Confidence 567899999999999999998888774 56666654 468999999998654
No 214
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.36 E-value=5.8e-12 Score=131.96 Aligned_cols=129 Identities=12% Similarity=0.102 Sum_probs=84.5
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh----hcC----------------------ccccCCceee
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS----HIG----------------------SFVPADAATV 592 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la----q~g----------------------~~vpa~~~~~ 592 (792)
..+.++++|+.. |++++|+||||||||||+|+++++.-.. ..| .|+|.+...+
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 95 (249)
T PRK14253 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPF 95 (249)
T ss_pred eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcC
Confidence 457889999988 9999999999999999999998764320 111 1233221100
Q ss_pred e--ccc--------c----c-c---------------------hhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCC
Q 043119 593 G--LTD--------S----K-H---------------------MTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKG 635 (792)
Q Consensus 593 ~--~~~--------~----~-~---------------------~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~g 635 (792)
+ +.+ . + . .......++. |.++++.+...+.+|+++|+|||++|
T Consensus 96 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 175 (249)
T PRK14253 96 PMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSA 175 (249)
T ss_pred cccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 0 000 0 0 0 0001122333 33445555555789999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 636 TLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 636 t~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.|+.....+. .+++.+.+ +.++|++||+.+.+.
T Consensus 176 LD~~~~~~l~-~~l~~~~~---~~tii~~sh~~~~~~ 208 (249)
T PRK14253 176 LDPIATHKIE-ELMEELKK---NYTIVIVTHSMQQAR 208 (249)
T ss_pred CCHHHHHHHH-HHHHHHhc---CCeEEEEecCHHHHH
Confidence 9998777774 56666654 368999999998765
No 215
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.36 E-value=3.8e-12 Score=134.35 Aligned_cols=131 Identities=15% Similarity=0.120 Sum_probs=86.3
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--hcC--------------------------ccccCCce
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--HIG--------------------------SFVPADAA 590 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--q~g--------------------------~~vpa~~~ 590 (792)
..+.++++|+.. |++++|+||||||||||+|+++++.-.. +.| .|+|....
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN 96 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc
Confidence 456789999987 9999999999999999999998765321 001 23333311
Q ss_pred eee---cc---------------------c----------------ccchhhccchhHH-HHHHHHHHHHhCCCCeEEEE
Q 043119 591 TVG---LT---------------------D----------------SKHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLL 629 (792)
Q Consensus 591 ~~~---~~---------------------~----------------~~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvll 629 (792)
.++ +. + ..........++. |.++++.+...+.+|+++|+
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 176 (262)
T PRK09984 97 LVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILA 176 (262)
T ss_pred cccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEe
Confidence 100 00 0 0000011223333 34455555556789999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 630 DEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 630 DE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|||++|.|+.....+. .+++.+.+.. +.++|++||+.+.+.
T Consensus 177 DEPt~~LD~~~~~~l~-~~l~~~~~~~-g~tvii~tH~~~~~~ 217 (262)
T PRK09984 177 DEPIASLDPESARIVM-DTLRDINQND-GITVVVTLHQVDYAL 217 (262)
T ss_pred cCccccCCHHHHHHHH-HHHHHHHHhc-CCEEEEEeCCHHHHH
Confidence 9999999998888885 5666666432 579999999998764
No 216
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.36 E-value=3.9e-12 Score=134.92 Aligned_cols=142 Identities=11% Similarity=0.088 Sum_probs=91.9
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh----hcC---------------
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS----HIG--------------- 582 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la----q~g--------------- 582 (792)
.|.+++...-+ .+..+.++++|+.. |++++|+||||||||||+|+++++.-.. ..|
T Consensus 20 ~l~~~nl~~~~----~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 20 VFEVEGVKVFY----GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred eEEEeeEEEEe----CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 45666555443 23457889999988 9999999999999999999998663210 111
Q ss_pred --------ccccCCceeee--ccc-----c---------c------------------chhhccchhHH-HHHHHHHHHH
Q 043119 583 --------SFVPADAATVG--LTD-----S---------K------------------HMTAEQSSFMI-DLHQVGMMLR 619 (792)
Q Consensus 583 --------~~vpa~~~~~~--~~~-----~---------~------------------~~~~~~s~f~~-e~~~~~~~l~ 619 (792)
.|+|.....+. +.+ . + ......+.++. |.++++.+..
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAra 175 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARA 175 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHH
Confidence 13333321110 000 0 0 00011123333 4455555556
Q ss_pred hCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 620 QATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 620 ~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+.+|+++|+|||++|+|+.....+. .++..+.+ +.++|++||+.+.+.
T Consensus 176 L~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~---~~tiii~sH~~~~~~ 224 (274)
T PRK14265 176 IAMKPDVLLMDEPCSALDPISTRQVE-ELCLELKE---QYTIIMVTHNMQQAS 224 (274)
T ss_pred HhhCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhc---CCEEEEEeCCHHHHH
Confidence 67999999999999999998888875 46666653 468999999998875
No 217
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.36 E-value=2.6e-12 Score=136.31 Aligned_cols=130 Identities=21% Similarity=0.199 Sum_probs=86.3
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH-----------------hhcCccccCCcee----------
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL-----------------SHIGSFVPADAAT---------- 591 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l-----------------aq~g~~vpa~~~~---------- 591 (792)
+.+.+|++|+.. |++++|+||||||||||||+++++.-. ...-.|+|.....
T Consensus 20 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~ 99 (272)
T PRK15056 20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVED 99 (272)
T ss_pred cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhh
Confidence 456789999988 999999999999999999999866311 0111244443210
Q ss_pred -e--e------ccc---c--c--------------chhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHH
Q 043119 592 -V--G------LTD---S--K--------------HMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGI 642 (792)
Q Consensus 592 -~--~------~~~---~--~--------------~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~ 642 (792)
+ + ... . + ........++.++ ++++.+...+.+|+++|+|||++|.|+....
T Consensus 100 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~ 179 (272)
T PRK15056 100 VVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEA 179 (272)
T ss_pred heecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 0 0 000 0 0 0001123344333 4455555567899999999999999998888
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 643 GLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 643 ~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+. .++..+.+. +.++|++||+.+.+.
T Consensus 180 ~l~-~~L~~~~~~--g~tviivsH~~~~~~ 206 (272)
T PRK15056 180 RII-SLLRELRDE--GKTMLVSTHNLGSVT 206 (272)
T ss_pred HHH-HHHHHHHhC--CCEEEEEeCCHHHHH
Confidence 885 566666654 578999999998764
No 218
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=2.4e-12 Score=148.80 Aligned_cols=131 Identities=16% Similarity=0.149 Sum_probs=88.1
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh-hcC----------------------ccccCCceee--
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS-HIG----------------------SFVPADAATV-- 592 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la-q~g----------------------~~vpa~~~~~-- 592 (792)
+..+.++++|+.. |++++|+||||||||||+|+++++.... ..| .|||.+...+
T Consensus 17 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 96 (506)
T PRK13549 17 GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96 (506)
T ss_pred CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence 3457889999988 9999999999999999999998865420 111 1333221100
Q ss_pred -ec---------------cc-----------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCH
Q 043119 593 -GL---------------TD-----------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLT 638 (792)
Q Consensus 593 -~~---------------~~-----------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~ 638 (792)
.+ .+ ........++++.++ ++++.+...+.+|+++|+|||++|.|+
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~ 176 (506)
T PRK13549 97 LSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTE 176 (506)
T ss_pred CcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 00 00 000011123444444 445555556789999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 639 EDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 639 ~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.....+. .++..+.+. +.++|++||+.+.+.
T Consensus 177 ~~~~~l~-~~l~~l~~~--~~tvi~~tH~~~~~~ 207 (506)
T PRK13549 177 SETAVLL-DIIRDLKAH--GIACIYISHKLNEVK 207 (506)
T ss_pred HHHHHHH-HHHHHHHHC--CCEEEEEeCcHHHHH
Confidence 8888885 567677654 579999999988764
No 219
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.36 E-value=5.3e-12 Score=129.65 Aligned_cols=130 Identities=16% Similarity=0.197 Sum_probs=83.8
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh-----------------------hcCccccCCceee---
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS-----------------------HIGSFVPADAATV--- 592 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la-----------------------q~g~~vpa~~~~~--- 592 (792)
..+.++++|... |++++|+||||||||||++.+++..... +.-.|+|.....+
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFL 97 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCC
Confidence 346778999887 9999999999999999999998653110 1112333321110
Q ss_pred ecc-------------c-----------------ccchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHH
Q 043119 593 GLT-------------D-----------------SKHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDG 641 (792)
Q Consensus 593 ~~~-------------~-----------------~~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~ 641 (792)
.+. + ..........++. +.++++.+...+.+|+++|+|||++|.|+...
T Consensus 98 t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~ 177 (220)
T TIGR02982 98 TARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSG 177 (220)
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHH
Confidence 000 0 0000001122333 33445555555789999999999999999888
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccChhhh
Q 043119 642 IGLLGGTINYFVTCDVPPKVLVCTHLTELL 671 (792)
Q Consensus 642 ~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~ 671 (792)
..+. .+++.+.+. .+.++|++||++++.
T Consensus 178 ~~l~-~~l~~~~~~-~~~tii~~sh~~~~~ 205 (220)
T TIGR02982 178 RDVV-ELMQKLARE-QGCTILIVTHDNRIL 205 (220)
T ss_pred HHHH-HHHHHHHHH-cCCEEEEEeCCHHHH
Confidence 8874 566666642 157999999999864
No 220
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=2.1e-12 Score=137.41 Aligned_cols=130 Identities=20% Similarity=0.157 Sum_probs=87.3
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hcCccccCCce-ee---ecc
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------------HIGSFVPADAA-TV---GLT 595 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------------q~g~~vpa~~~-~~---~~~ 595 (792)
.+..|++|+.. |++++|+||||||||||+|+++++.... +.-.|||.... .+ .+.
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 100 (279)
T PRK13650 21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVE 100 (279)
T ss_pred eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHH
Confidence 47789999988 9999999999999999999998764211 11124444321 00 000
Q ss_pred c-----------------------------ccchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHH
Q 043119 596 D-----------------------------SKHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLL 645 (792)
Q Consensus 596 ~-----------------------------~~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~ 645 (792)
+ ..........++. +.++++.+...+.+|+++|+|||++|.|+.....+.
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~ 180 (279)
T PRK13650 101 DDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELI 180 (279)
T ss_pred HHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH
Confidence 0 0000111234443 445566666668999999999999999998877774
Q ss_pred HHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 646 GGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 646 ~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.++..+.+.. +.++|++||+++.+.
T Consensus 181 -~~l~~l~~~~-g~tilivtH~~~~~~ 205 (279)
T PRK13650 181 -KTIKGIRDDY-QMTVISITHDLDEVA 205 (279)
T ss_pred -HHHHHHHHhc-CCEEEEEecCHHHHH
Confidence 5677776532 679999999998763
No 221
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.36 E-value=3.5e-12 Score=134.80 Aligned_cols=131 Identities=15% Similarity=0.082 Sum_probs=86.6
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH-----------------------hhcCccccCCce-ee--
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL-----------------------SHIGSFVPADAA-TV-- 592 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l-----------------------aq~g~~vpa~~~-~~-- 592 (792)
..+.++++|+.. |++++|+||||||||||||+++++... .+.-.|+|.... .+
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 103 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNP 103 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCC
Confidence 467889999988 999999999999999999999876311 011124444321 00
Q ss_pred --ec-------------ccc------------------cchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCH
Q 043119 593 --GL-------------TDS------------------KHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLT 638 (792)
Q Consensus 593 --~~-------------~~~------------------~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~ 638 (792)
.+ .+. .......+.++. |.++++.+...+.+|+++|||||++|+|+
T Consensus 104 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~ 183 (265)
T TIGR02769 104 RMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDM 183 (265)
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 00 000 000011123333 34455555556789999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 639 EDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 639 ~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.....+. .+++.+.+.. +.++|++||+++.+.
T Consensus 184 ~~~~~l~-~~l~~~~~~~-g~tiiivsH~~~~~~ 215 (265)
T TIGR02769 184 VLQAVIL-ELLRKLQQAF-GTAYLFITHDLRLVQ 215 (265)
T ss_pred HHHHHHH-HHHHHHHHhc-CcEEEEEeCCHHHHH
Confidence 8877775 4666665431 579999999998875
No 222
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.36 E-value=5.9e-12 Score=128.02 Aligned_cols=143 Identities=13% Similarity=0.083 Sum_probs=91.2
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh---------------------h
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS---------------------H 580 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la---------------------q 580 (792)
.+.+++...-+-. ....+.++++|+.. |++++|+||||||||||+|.++++.... +
T Consensus 6 ~l~~~~l~~~~~~--~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 6 EIEVENLSVRYAP--DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred eEEEEEEEEEeCC--CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 3555555443310 11357889999988 9999999999999999999998764210 1
Q ss_pred cCccccCCceee--ec------cc---ccc------hhhccchhH-HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHH
Q 043119 581 IGSFVPADAATV--GL------TD---SKH------MTAEQSSFM-IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGI 642 (792)
Q Consensus 581 ~g~~vpa~~~~~--~~------~~---~~~------~~~~~s~f~-~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~ 642 (792)
+ .|+|.+...+ .+ .+ .+. .......++ +|.++++.+...+.+|+++|+|||++|.|+....
T Consensus 84 i-~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~ 162 (207)
T cd03369 84 L-TIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162 (207)
T ss_pred E-EEEecCCcccCccHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHH
Confidence 1 2333332111 00 00 000 011122333 3455666666668999999999999999998877
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 643 GLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 643 ~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+. .++..+.+ +.++|++||+.+.+.
T Consensus 163 ~l~-~~l~~~~~---~~tiii~th~~~~~~ 188 (207)
T cd03369 163 LIQ-KTIREEFT---NSTILTIAHRLRTII 188 (207)
T ss_pred HHH-HHHHHhcC---CCEEEEEeCCHHHHh
Confidence 764 45655532 579999999998864
No 223
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.35 E-value=5.8e-12 Score=133.56 Aligned_cols=151 Identities=15% Similarity=0.072 Sum_probs=97.6
Q ss_pred CCCCceecCCCcEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC--------
Q 043119 512 NYMRPILTLEPLLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIG-------- 582 (792)
Q Consensus 512 ~~~~P~~~~~~~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g-------- 582 (792)
+--+|..+..+.|.+++.... ...+.++++|+.. |++++|+||||||||||+|+++++.-. ..|
T Consensus 28 ~~~~~~~~~~~~l~i~nls~~------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p-~~G~I~i~g~i 100 (282)
T cd03291 28 NNDRKHSSDDNNLFFSNLCLV------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP-SEGKIKHSGRI 100 (282)
T ss_pred ccccccCCCCCeEEEEEEEEe------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEE
Confidence 334555555556788777652 2457789999988 999999999999999999999876421 111
Q ss_pred ccccCCceee--eccc---------c---c------chh---------------hccchhHH-HHHHHHHHHHhCCCCeE
Q 043119 583 SFVPADAATV--GLTD---------S---K------HMT---------------AEQSSFMI-DLHQVGMMLRQATSQSL 626 (792)
Q Consensus 583 ~~vpa~~~~~--~~~~---------~---~------~~~---------------~~~s~f~~-e~~~~~~~l~~~~~~sl 626 (792)
.|+|...... .+.+ . . .+. ...+.++. +.++++.+...+.+|++
T Consensus 101 ~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~i 180 (282)
T cd03291 101 SFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADL 180 (282)
T ss_pred EEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 1344332110 0000 0 0 000 00123443 34555555556789999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 627 CLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 627 vllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+|+|||++|.|+.....+...+++.+.+ +.++|++||+.+...
T Consensus 181 LiLDEPt~gLD~~~~~~l~~~ll~~~~~---~~tIiiisH~~~~~~ 223 (282)
T cd03291 181 YLLDSPFGYLDVFTEKEIFESCVCKLMA---NKTRILVTSKMEHLK 223 (282)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHhhC---CCEEEEEeCChHHHH
Confidence 9999999999998877775545555543 468999999998764
No 224
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.35 E-value=2.2e-12 Score=141.51 Aligned_cols=131 Identities=16% Similarity=0.122 Sum_probs=85.1
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh----------------------------cCccccCCce
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH----------------------------IGSFVPADAA 590 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq----------------------------~g~~vpa~~~ 590 (792)
..+.++++|+.. |++++|+||||||||||+|+++++..... .-.|||....
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 456789999988 99999999999999999999986542110 0112332221
Q ss_pred eee---ccc-----------------------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCC
Q 043119 591 TVG---LTD-----------------------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTL 637 (792)
Q Consensus 591 ~~~---~~~-----------------------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~ 637 (792)
-++ +.+ ..........++.++ ++++.+...+.+|+++|||||++|.|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD 196 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALD 196 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 111 000 000000112334444 34444445579999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 638 TEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 638 ~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+.....+.. .+..+.+. .+.++||+||+++.+.
T Consensus 197 ~~~r~~l~~-~L~~l~~~-~~~TII~iTHdl~e~~ 229 (382)
T TIGR03415 197 PLIRTQLQD-ELLELQAK-LNKTIIFVSHDLDEAL 229 (382)
T ss_pred HHHHHHHHH-HHHHHHHh-cCCEEEEEeCCHHHHH
Confidence 999998865 45555543 2579999999998864
No 225
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.35 E-value=2.8e-12 Score=133.36 Aligned_cols=128 Identities=13% Similarity=0.110 Sum_probs=83.9
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hcCccccCCceee--ecc--
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------------HIGSFVPADAATV--GLT-- 595 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------------q~g~~vpa~~~~~--~~~-- 595 (792)
.+.++++|+.. |++++|+||||||||||+|++++..... +.-.|+|.....+ .+.
T Consensus 17 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~ 96 (238)
T cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAEN 96 (238)
T ss_pred cceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHH
Confidence 46778899887 9999999999999999999998764210 1112333332100 000
Q ss_pred ------c---cc--------ch---------------hhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHH
Q 043119 596 ------D---SK--------HM---------------TAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGI 642 (792)
Q Consensus 596 ------~---~~--------~~---------------~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~ 642 (792)
+ .+ .+ ......++.++ +++..+...+.+|+++|+|||++|.|+....
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~ 176 (238)
T cd03249 97 IRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEK 176 (238)
T ss_pred hhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 0 00 00 00112344444 4444445557899999999999999998888
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 643 GLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 643 ~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+. .+++.+. . +.++|++||+++.+.
T Consensus 177 ~l~-~~l~~~~-~--g~~vi~~sh~~~~~~ 202 (238)
T cd03249 177 LVQ-EALDRAM-K--GRTTIVIAHRLSTIR 202 (238)
T ss_pred HHH-HHHHHhc-C--CCEEEEEeCCHHHHh
Confidence 774 5666654 3 578999999998874
No 226
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.35 E-value=4.3e-12 Score=130.40 Aligned_cols=129 Identities=17% Similarity=0.136 Sum_probs=85.5
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hcCccccCCceeee--cc-
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------------HIGSFVPADAATVG--LT- 595 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------------q~g~~vpa~~~~~~--~~- 595 (792)
..+.++++|+.. |++++|+||||||||||+|++++..... +.-.|+|....-+. +.
T Consensus 17 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~e 96 (221)
T cd03244 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRS 96 (221)
T ss_pred cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHH
Confidence 367889999988 9999999999999999999998763211 11123443321110 00
Q ss_pred --------c-c------------cch-----------hhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHH
Q 043119 596 --------D-S------------KHM-----------TAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGI 642 (792)
Q Consensus 596 --------~-~------------~~~-----------~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~ 642 (792)
. . +.. ....+.++. |.++++.+...+.+|+++|+|||++|+|+....
T Consensus 97 nl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~ 176 (221)
T cd03244 97 NLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 176 (221)
T ss_pred HhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 0 0 000 011233443 444555555567999999999999999998888
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 643 GLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 643 ~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+. .+++.+.+ +.++|++||+.+.+.
T Consensus 177 ~l~-~~l~~~~~---~~tii~~sh~~~~~~ 202 (221)
T cd03244 177 LIQ-KTIREAFK---DCTVLTIAHRLDTII 202 (221)
T ss_pred HHH-HHHHHhcC---CCEEEEEeCCHHHHh
Confidence 774 45665543 468999999998864
No 227
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.35 E-value=2.2e-12 Score=141.66 Aligned_cols=125 Identities=16% Similarity=0.093 Sum_probs=82.0
Q ss_pred ceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC-------------------------ccccCCceee---ecc
Q 043119 545 DTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIG-------------------------SFVPADAATV---GLT 595 (792)
Q Consensus 545 ~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g-------------------------~~vpa~~~~~---~~~ 595 (792)
+++|+.. |++++|+||||||||||||+++++.-. ..| .|||.....+ .+.
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p-~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 93 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP-DEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVR 93 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHH
Confidence 7888877 999999999999999999999876421 111 1233221111 000
Q ss_pred c------c----c-----------------chhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHH
Q 043119 596 D------S----K-----------------HMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGG 647 (792)
Q Consensus 596 ~------~----~-----------------~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~ 647 (792)
+ . . ......++++.++ ++++.+...+.+|+++|||||++|.|+.....+. .
T Consensus 94 enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~-~ 172 (354)
T TIGR02142 94 GNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEIL-P 172 (354)
T ss_pred HHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH-H
Confidence 0 0 0 0001123344444 4455555567899999999999999998888885 5
Q ss_pred HHHHHHhCCCCcEEEEEccChhhhh
Q 043119 648 TINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 648 ~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.++.+.+.. +.++|++||+++.+.
T Consensus 173 ~L~~l~~~~-g~tiiivtH~~~~~~ 196 (354)
T TIGR02142 173 YLERLHAEF-GIPILYVSHSLQEVL 196 (354)
T ss_pred HHHHHHHhc-CCEEEEEecCHHHHH
Confidence 666666532 578999999998764
No 228
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.35 E-value=4.4e-12 Score=132.89 Aligned_cols=128 Identities=14% Similarity=0.176 Sum_probs=84.0
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH-h---hcC-----------------------ccccCCceee
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL-S---HIG-----------------------SFVPADAATV 592 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l-a---q~g-----------------------~~vpa~~~~~ 592 (792)
.+.+|++|+.. |++++|+||||||||||+|+++++.-. . ..| .|+|.....+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence 46789999988 999999999999999999999875321 0 011 1333321111
Q ss_pred e--ccc-----c--------cc---------------------hhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCC
Q 043119 593 G--LTD-----S--------KH---------------------MTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKG 635 (792)
Q Consensus 593 ~--~~~-----~--------~~---------------------~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~g 635 (792)
+ +.+ . +. ......+++. |.++++.+...+.+|+++|+|||++|
T Consensus 97 ~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 176 (250)
T PRK14240 97 PMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSA 176 (250)
T ss_pred cccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 0 000 0 00 0011123433 34455555556789999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 636 TLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 636 t~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.|+.....+. .++..+.+ +.++|++||+.+.+.
T Consensus 177 LD~~~~~~l~-~~l~~~~~---~~tiii~sH~~~~~~ 209 (250)
T PRK14240 177 LDPISTLKIE-ELIQELKK---DYTIVIVTHNMQQAS 209 (250)
T ss_pred CCHHHHHHHH-HHHHHHhc---CCeEEEEEeCHHHHH
Confidence 9998888875 45666643 468999999998764
No 229
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=5.4e-12 Score=132.49 Aligned_cols=130 Identities=15% Similarity=0.135 Sum_probs=84.9
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH-h---hcC-----------------------ccccCCce
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL-S---HIG-----------------------SFVPADAA 590 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l-a---q~g-----------------------~~vpa~~~ 590 (792)
+..+.++++|+.. |++++|+||||||||||+|+++++.-. . ..| .|+|.+..
T Consensus 18 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 97 (253)
T PRK14261 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPN 97 (253)
T ss_pred CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCc
Confidence 3457889999988 999999999999999999999875321 0 012 12222211
Q ss_pred eee--cc-------------cc---c-ch-----------------hhccchhH-HHHHHHHHHHHhCCCCeEEEEeCCC
Q 043119 591 TVG--LT-------------DS---K-HM-----------------TAEQSSFM-IDLHQVGMMLRQATSQSLCLLDEFG 633 (792)
Q Consensus 591 ~~~--~~-------------~~---~-~~-----------------~~~~s~f~-~e~~~~~~~l~~~~~~slvllDE~~ 633 (792)
.++ +. +. + .. ......++ +|.++++.+...+.+|+++|+|||+
T Consensus 98 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~ 177 (253)
T PRK14261 98 PFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPC 177 (253)
T ss_pred cCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 000 00 00 0 00 00111222 3445555556667899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 634 KGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 634 ~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+|.|+.....+. .+++.+.+ +.++|++||+.+.+.
T Consensus 178 ~gLD~~~~~~l~-~~l~~~~~---~~tvii~sh~~~~~~ 212 (253)
T PRK14261 178 SALDPIATAKIE-DLIEDLKK---EYTVIIVTHNMQQAA 212 (253)
T ss_pred ccCCHHHHHHHH-HHHHHHhh---CceEEEEEcCHHHHH
Confidence 999998888874 56666654 368999999998764
No 230
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.35 E-value=3.4e-12 Score=147.37 Aligned_cols=129 Identities=14% Similarity=0.119 Sum_probs=86.9
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh----------------------hcCccccCCceee---e
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS----------------------HIGSFVPADAATV---G 593 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la----------------------q~g~~vpa~~~~~---~ 593 (792)
..+.++++|+.. |++++|+||||||||||||+++++.... ++ .|||.....+ .
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i-~~v~q~~~~~~~~t 95 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI-GIIHQELNLIPQLT 95 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE-EEEEcchhccCCCc
Confidence 457789999988 9999999999999999999998764211 11 1333321100 0
Q ss_pred c----------------ccc-----------------cchhhccchhHHHHH-HHHHHHHhCCCCeEEEEeCCCCCCCHH
Q 043119 594 L----------------TDS-----------------KHMTAEQSSFMIDLH-QVGMMLRQATSQSLCLLDEFGKGTLTE 639 (792)
Q Consensus 594 ~----------------~~~-----------------~~~~~~~s~f~~e~~-~~~~~l~~~~~~slvllDE~~~gt~~~ 639 (792)
+ .+. .......++++.+++ +++.+...+.+|+++|||||++|.|+.
T Consensus 96 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~ 175 (501)
T PRK10762 96 IAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDT 175 (501)
T ss_pred HHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHH
Confidence 0 000 000111234554444 444444557899999999999999998
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 640 DGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 640 ~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
....+. .++..+.+. +.++|++||+.+.+.
T Consensus 176 ~~~~l~-~~l~~l~~~--~~tvii~sHd~~~~~ 205 (501)
T PRK10762 176 ETESLF-RVIRELKSQ--GRGIVYISHRLKEIF 205 (501)
T ss_pred HHHHHH-HHHHHHHHC--CCEEEEEeCCHHHHH
Confidence 888885 577777654 678999999988764
No 231
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=4.4e-12 Score=135.18 Aligned_cols=142 Identities=14% Similarity=0.172 Sum_probs=90.9
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH----hhcC---------------
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL----SHIG--------------- 582 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l----aq~g--------------- 582 (792)
.+.+++....+ .+..+.++++|+.. |++++|+||||||||||+|.++++.-. ..-|
T Consensus 39 ~l~i~~l~~~~----~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 39 VIEARDLNVFY----GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred eEEEEEEEEEE----CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 35555554333 23467889999988 999999999999999999999876421 1111
Q ss_pred --------ccccCCceeee--ccc----c-------------------c---------chhhccchhHH-HHHHHHHHHH
Q 043119 583 --------SFVPADAATVG--LTD----S-------------------K---------HMTAEQSSFMI-DLHQVGMMLR 619 (792)
Q Consensus 583 --------~~vpa~~~~~~--~~~----~-------------------~---------~~~~~~s~f~~-e~~~~~~~l~ 619 (792)
.|+|.....++ +.+ . . ......+.++. |.++++.+..
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAra 194 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARA 194 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHH
Confidence 12332211000 000 0 0 00111233443 3345555555
Q ss_pred hCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 620 QATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 620 ~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+.+|+++|||||++|+|+.....+. .+++.+.+ +.++|++||+.+.+.
T Consensus 195 L~~~p~lLLLDEPts~LD~~~~~~l~-~~L~~~~~---~~tiii~tH~~~~i~ 243 (285)
T PRK14254 195 IAPDPEVILMDEPASALDPVATSKIE-DLIEELAE---EYTVVIVTHNMQQAA 243 (285)
T ss_pred HHcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHhc---CCEEEEEeCCHHHHH
Confidence 67899999999999999998777774 56666654 258999999999865
No 232
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=5.3e-12 Score=134.77 Aligned_cols=129 Identities=15% Similarity=0.134 Sum_probs=84.7
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH--H--hhcC-----------------------ccccCCcee
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF--L--SHIG-----------------------SFVPADAAT 591 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~--l--aq~g-----------------------~~vpa~~~~ 591 (792)
..+.+|++|+.. |++++|+||||||||||||.++++.- . ...| .|+|.+...
T Consensus 52 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 131 (286)
T PRK14275 52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNP 131 (286)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCC
Confidence 457889999988 99999999999999999999988531 1 0111 133332211
Q ss_pred ee--cc-------------ccc---------------------chhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCC
Q 043119 592 VG--LT-------------DSK---------------------HMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGK 634 (792)
Q Consensus 592 ~~--~~-------------~~~---------------------~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~ 634 (792)
++ +. +.. ......++++. |.++++.+...+.+++++|+|||++
T Consensus 132 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~ 211 (286)
T PRK14275 132 FPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTS 211 (286)
T ss_pred CccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 10 00 000 00011123333 4445555556678999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 635 GTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 635 gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|.|+.....+. .+++.+.. +.++|++||+++.+.
T Consensus 212 gLD~~~~~~l~-~~L~~~~~---~~tvIivsH~~~~~~ 245 (286)
T PRK14275 212 ALDPKATAKIE-DLIQELRG---SYTIMIVTHNMQQAS 245 (286)
T ss_pred cCCHHHHHHHH-HHHHHHhc---CCeEEEEeCCHHHHH
Confidence 99998887775 46666653 368999999999875
No 233
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.35 E-value=4.9e-12 Score=130.47 Aligned_cols=145 Identities=18% Similarity=0.201 Sum_probs=90.8
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hc
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------------HI 581 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------------q~ 581 (792)
.+.+++...-+-. .....+.++++++.. |++++|+||||||||||+|.++++.-.. +.
T Consensus 11 ~l~~~~l~~~~~~-~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 89 (226)
T cd03248 11 IVKFQNVTFAYPT-RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSK 89 (226)
T ss_pred eEEEEEEEEEeCC-CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhh
Confidence 3555555543311 011357889999988 9999999999999999999998764210 00
Q ss_pred CccccCCceee--eccc--------c--------------------------cchhhccchhHH-HHHHHHHHHHhCCCC
Q 043119 582 GSFVPADAATV--GLTD--------S--------------------------KHMTAEQSSFMI-DLHQVGMMLRQATSQ 624 (792)
Q Consensus 582 g~~vpa~~~~~--~~~~--------~--------------------------~~~~~~~s~f~~-e~~~~~~~l~~~~~~ 624 (792)
-.|+|.....+ .+.+ . .........++. |.++++.+...+.+|
T Consensus 90 i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p 169 (226)
T cd03248 90 VSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNP 169 (226)
T ss_pred EEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 11233221100 0000 0 000111223333 445555555567999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 625 SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 625 slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+++|+|||++|.|+.....+. .++..+.+ +.++|++||+++.+.
T Consensus 170 ~llllDEPt~~LD~~~~~~l~-~~l~~~~~---~~tii~~sh~~~~~~ 213 (226)
T cd03248 170 QVLILDEATSALDAESEQQVQ-QALYDWPE---RRTVLVIAHRLSTVE 213 (226)
T ss_pred CEEEEeCCcccCCHHHHHHHH-HHHHHHcC---CCEEEEEECCHHHHH
Confidence 999999999999999888885 45555543 368999999998874
No 234
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.35 E-value=3e-12 Score=133.08 Aligned_cols=129 Identities=13% Similarity=0.158 Sum_probs=84.9
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hcCccccCCceee--eccc
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------------HIGSFVPADAATV--GLTD 596 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------------q~g~~vpa~~~~~--~~~~ 596 (792)
..+.++++|+.. |++++|+||||||||||+|.++++.... ..-.|+|.....+ .+.+
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~ 94 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRD 94 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHH
Confidence 356789999987 9999999999999999999998764211 0112344332110 0000
Q ss_pred ---------cc-c------------------------hhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHH
Q 043119 597 ---------SK-H------------------------MTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDG 641 (792)
Q Consensus 597 ---------~~-~------------------------~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~ 641 (792)
.. . .......++.++ ++++.+...+.+|+++|+|||++|.|+...
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~ 174 (237)
T cd03252 95 NIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESE 174 (237)
T ss_pred HhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHH
Confidence 00 0 001113444444 444444455789999999999999999888
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 642 IGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 642 ~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+. .++..+.+ +.++|++||+++.+.
T Consensus 175 ~~l~-~~l~~~~~---~~tiii~sH~~~~~~ 201 (237)
T cd03252 175 HAIM-RNMHDICA---GRTVIIIAHRLSTVK 201 (237)
T ss_pred HHHH-HHHHHhcC---CCEEEEEeCCHHHHH
Confidence 8885 45655543 578999999998864
No 235
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.35 E-value=2.7e-12 Score=135.71 Aligned_cols=130 Identities=12% Similarity=0.048 Sum_probs=85.6
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hcCccccCCce-----eeec
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------------HIGSFVPADAA-----TVGL 594 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------------q~g~~vpa~~~-----~~~~ 594 (792)
.+.++++|+.. |++++|+||||||||||||+++++.-.. +.-.|+|.... ...+
T Consensus 27 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv 106 (267)
T PRK15112 27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRI 106 (267)
T ss_pred ceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhH
Confidence 47789999988 9999999999999999999998764210 11123443321 0000
Q ss_pred -------------cc-----cc--------ch-----hhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHH
Q 043119 595 -------------TD-----SK--------HM-----TAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGI 642 (792)
Q Consensus 595 -------------~~-----~~--------~~-----~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~ 642 (792)
.+ .+ .+ ....+.++. |.++++.+...+.+|.++|||||++|.|+....
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 186 (267)
T PRK15112 107 SQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRS 186 (267)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHH
Confidence 00 00 00 001133443 344555555667899999999999999998877
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 643 GLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 643 ~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+. .++..+.+.. +.++|++||+.+.+.
T Consensus 187 ~l~-~~l~~~~~~~-g~tviivsH~~~~~~ 214 (267)
T PRK15112 187 QLI-NLMLELQEKQ-GISYIYVTQHLGMMK 214 (267)
T ss_pred HHH-HHHHHHHHHc-CcEEEEEeCCHHHHH
Confidence 774 4666665431 578999999998875
No 236
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.35 E-value=3.2e-12 Score=162.96 Aligned_cols=130 Identities=17% Similarity=0.120 Sum_probs=92.2
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhcCccccCCceeeeccc--
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------------------SHIGSFVPADAATVGLTD-- 596 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------------------aq~g~~vpa~~~~~~~~~-- 596 (792)
..+.++++|+.. |++++|+|||||||||++|++++.... .++| |+|...+-.....
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IG-y~pQ~~~L~~~LTv~ 2030 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG-YCPQFDAIDDLLTGR 2030 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEE-EEeccccCCCCCCHH
Confidence 468899999998 999999999999999999999876421 1232 4555432211100
Q ss_pred -------------cc-----------------chhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHH
Q 043119 597 -------------SK-----------------HMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLL 645 (792)
Q Consensus 597 -------------~~-----------------~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~ 645 (792)
.+ ......++++.++ ++++.+.+.+.+|+++|||||++|.||.....+
T Consensus 2031 E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l- 2109 (2272)
T TIGR01257 2031 EHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRML- 2109 (2272)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH-
Confidence 00 0011124455555 445566666899999999999999999888888
Q ss_pred HHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 646 GGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 646 ~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
+.+++.+.+. +.++|++||+++.++.
T Consensus 2110 ~~lL~~l~~~--g~TIILtTH~mee~e~ 2135 (2272)
T TIGR01257 2110 WNTIVSIIRE--GRAVVLTSHSMEECEA 2135 (2272)
T ss_pred HHHHHHHHhC--CCEEEEEeCCHHHHHH
Confidence 5688877664 6799999999998864
No 237
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=5.2e-12 Score=132.65 Aligned_cols=129 Identities=12% Similarity=0.108 Sum_probs=84.0
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh----hcC-----------------------ccccCCcee
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS----HIG-----------------------SFVPADAAT 591 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la----q~g-----------------------~~vpa~~~~ 591 (792)
..+.++++|+.. |++++|+||||||||||+|.++++.-.. ..| .|+|.....
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (253)
T PRK14267 17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNP 96 (253)
T ss_pred eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCcc
Confidence 457889999988 9999999999999999999998774321 111 122222110
Q ss_pred e---eccc----c---cc----------------------------hhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCC
Q 043119 592 V---GLTD----S---KH----------------------------MTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEF 632 (792)
Q Consensus 592 ~---~~~~----~---~~----------------------------~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~ 632 (792)
+ .+.+ . +. .......++. +.++++.+...+.+|+++|+|||
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 176 (253)
T PRK14267 97 FPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEP 176 (253)
T ss_pred CCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 0 0000 0 00 0000112222 33455555556789999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 633 GKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 633 ~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
++|.|+.....+. .+++.+.+ +.++|++||+.+.+.
T Consensus 177 ~~~LD~~~~~~l~-~~l~~~~~---~~tiii~sH~~~~~~ 212 (253)
T PRK14267 177 TANIDPVGTAKIE-ELLFELKK---EYTIVLVTHSPAQAA 212 (253)
T ss_pred CccCCHHHHHHHH-HHHHHHhh---CCEEEEEECCHHHHH
Confidence 9999998877775 56666654 368999999998764
No 238
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.34 E-value=5.3e-12 Score=132.35 Aligned_cols=129 Identities=14% Similarity=0.147 Sum_probs=84.0
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH----hhcC-----------------------ccccCCcee
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL----SHIG-----------------------SFVPADAAT 591 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l----aq~g-----------------------~~vpa~~~~ 591 (792)
..+.++++|+.. |++++|+||||||||||+|.++++.-. ...| .|+|.....
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP 96 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence 346788999987 999999999999999999999986421 0111 123322110
Q ss_pred ee--ccc--------c---c-----------------------chhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCC
Q 043119 592 VG--LTD--------S---K-----------------------HMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGK 634 (792)
Q Consensus 592 ~~--~~~--------~---~-----------------------~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~ 634 (792)
++ +.+ . . ........++. +.++++.+...+.+++++|+|||++
T Consensus 97 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~ 176 (251)
T PRK14270 97 FPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTS 176 (251)
T ss_pred CCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 00 000 0 0 00011122333 3344555555678999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 635 GTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 635 gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|.|+.....+. .++..+.+ +.++|++||+.+.+.
T Consensus 177 ~LD~~~~~~l~-~~L~~~~~---~~tiiivsH~~~~~~ 210 (251)
T PRK14270 177 ALDPISTLKIE-DLMVELKK---EYTIVIVTHNMQQAS 210 (251)
T ss_pred cCCHHHHHHHH-HHHHHHHh---CCeEEEEEcCHHHHH
Confidence 99998888885 46666654 358999999998764
No 239
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.34 E-value=3.9e-12 Score=131.15 Aligned_cols=126 Identities=17% Similarity=0.213 Sum_probs=83.1
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--hhcC------------------ccccCCceee---ecc
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--SHIG------------------SFVPADAATV---GLT 595 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--aq~g------------------~~vpa~~~~~---~~~ 595 (792)
..+.++++|+.. |++++|+||||||||||+|.+++.... ...| .|+|.+...+ .+.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 99 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVR 99 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHH
Confidence 456778888887 999999999999999999999877540 1111 1333322110 000
Q ss_pred c-----------c---------c----c---------hhhccchhH-HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHH
Q 043119 596 D-----------S---------K----H---------MTAEQSSFM-IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDG 641 (792)
Q Consensus 596 ~-----------~---------~----~---------~~~~~s~f~-~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~ 641 (792)
+ . + . .....+.++ +|.++++.+...+.+|+++|+|||++|.|+...
T Consensus 100 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~ 179 (226)
T cd03234 100 ETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTA 179 (226)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHH
Confidence 0 0 0 0 000112333 344555556666789999999999999999888
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccCh
Q 043119 642 IGLLGGTINYFVTCDVPPKVLVCTHLT 668 (792)
Q Consensus 642 ~~l~~~~~~~l~~~~~~~~~l~~TH~~ 668 (792)
..+. .++..+.+. +.++|++||+.
T Consensus 180 ~~~~-~~l~~~~~~--~~tiii~sh~~ 203 (226)
T cd03234 180 LNLV-STLSQLARR--NRIVILTIHQP 203 (226)
T ss_pred HHHH-HHHHHHHHC--CCEEEEEecCC
Confidence 8875 466666554 57999999997
No 240
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.34 E-value=4.3e-12 Score=137.73 Aligned_cols=148 Identities=18% Similarity=0.147 Sum_probs=94.9
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--hcC-----------------
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--HIG----------------- 582 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--q~g----------------- 582 (792)
.+.+++..-.+-.......+.++++|+.. |++++|+|+|||||||++|+++++.-.. ..|
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 45666655443211112347789999988 9999999999999999999998765321 011
Q ss_pred --------ccccCCce-e----eec-------------cc-cc-------------------chhhccchhHHHH-HHHH
Q 043119 583 --------SFVPADAA-T----VGL-------------TD-SK-------------------HMTAEQSSFMIDL-HQVG 615 (792)
Q Consensus 583 --------~~vpa~~~-~----~~~-------------~~-~~-------------------~~~~~~s~f~~e~-~~~~ 615 (792)
.+||.+.. . +.+ .+ .+ ........++.+| ++++
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~ 171 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVM 171 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHH
Confidence 23443321 0 000 00 00 0000112334444 4455
Q ss_pred HHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 616 MMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 616 ~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+...+.+|+|+|+|||++|+|+.....+. .++..+.+. .+.++||+||+++++.
T Consensus 172 IArAL~~~P~llilDEPts~LD~~~~~~i~-~lL~~l~~~-~g~til~iTHdl~~~~ 226 (330)
T PRK09473 172 IAMALLCRPKLLIADEPTTALDVTVQAQIM-TLLNELKRE-FNTAIIMITHDLGVVA 226 (330)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHH-cCCEEEEEECCHHHHH
Confidence 555567999999999999999999888885 466677653 2679999999999875
No 241
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.34 E-value=4.7e-11 Score=135.69 Aligned_cols=127 Identities=20% Similarity=0.167 Sum_probs=85.9
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccc---------------------
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS--------------------- 597 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~--------------------- 597 (792)
..+..+++|... |.-++|+||||+|||||||.+++..-.. .|.........++.+|.
T Consensus 335 ~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~-~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~ 413 (530)
T COG0488 335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL-SGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPD 413 (530)
T ss_pred ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC-CceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCcc
Confidence 478889999988 9999999999999999999885433211 33322223333333330
Q ss_pred -----------------cchhhccchhH-HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCc
Q 043119 598 -----------------KHMTAEQSSFM-IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPP 659 (792)
Q Consensus 598 -----------------~~~~~~~s~f~-~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~ 659 (792)
+......++++ +|..++..+.-...+|-++|||||++.+|.....+|..++ .+. ..
T Consensus 414 ~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL----~~f--~G 487 (530)
T COG0488 414 GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEAL----LDF--EG 487 (530)
T ss_pred ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHH----HhC--CC
Confidence 00011122333 3556666666668999999999999999997776665433 333 35
Q ss_pred EEEEEccChhhhhc
Q 043119 660 KVLVCTHLTELLNE 673 (792)
Q Consensus 660 ~~l~~TH~~~l~~~ 673 (792)
++|++|||.++++.
T Consensus 488 tvl~VSHDr~Fl~~ 501 (530)
T COG0488 488 TVLLVSHDRYFLDR 501 (530)
T ss_pred eEEEEeCCHHHHHh
Confidence 89999999999874
No 242
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.34 E-value=6.7e-12 Score=131.63 Aligned_cols=141 Identities=13% Similarity=0.131 Sum_probs=88.9
Q ss_pred EEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH--H--hhcC----------------
Q 043119 524 LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF--L--SHIG---------------- 582 (792)
Q Consensus 524 l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~--l--aq~g---------------- 582 (792)
+.+++...-+ ....+.++++|+.. |++++|+||||||||||+|.++++.. . ...|
T Consensus 5 l~~~~l~~~~----~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 5 ISAKDVHLSY----GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred EEEEeeEEEE----CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4555554433 12357788999988 99999999999999999999998753 0 0111
Q ss_pred -------ccccCCceee--eccc-------------cc-------------ch--------hhccchhHH-HHHHHHHHH
Q 043119 583 -------SFVPADAATV--GLTD-------------SK-------------HM--------TAEQSSFMI-DLHQVGMML 618 (792)
Q Consensus 583 -------~~vpa~~~~~--~~~~-------------~~-------------~~--------~~~~s~f~~-e~~~~~~~l 618 (792)
.|+|.+...+ ++.+ .+ .+ ......++. |.++++.+.
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~lar 160 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIAR 160 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHH
Confidence 1222221100 0000 00 00 011122333 444555555
Q ss_pred HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 619 RQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 619 ~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+.+|+++|+|||++|.|+.....+. .+++.+.+ +.++|++||+++.+.
T Consensus 161 al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~---~~tiiiisH~~~~~~ 210 (251)
T PRK14251 161 ALAVRPKVVLLDEPTSALDPISSSEIE-ETLMELKH---QYTFIMVTHNLQQAG 210 (251)
T ss_pred HHhcCCCEEEecCCCccCCHHHHHHHH-HHHHHHHc---CCeEEEEECCHHHHH
Confidence 567899999999999999998877774 56666643 468999999998764
No 243
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.34 E-value=7e-12 Score=132.61 Aligned_cols=131 Identities=17% Similarity=0.119 Sum_probs=87.0
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH-----------------------hhcCccccCCce-ee--
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL-----------------------SHIGSFVPADAA-TV-- 592 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l-----------------------aq~g~~vpa~~~-~~-- 592 (792)
..+.++++|+.. |++++|+||||||||||+|+++++... .+.-.|+|.... .+
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 104 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNP 104 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCC
Confidence 467889999988 999999999999999999999876421 001123333321 00
Q ss_pred --ecc-------------c-----------------c-cchhhccchhH-HHHHHHHHHHHhCCCCeEEEEeCCCCCCCH
Q 043119 593 --GLT-------------D-----------------S-KHMTAEQSSFM-IDLHQVGMMLRQATSQSLCLLDEFGKGTLT 638 (792)
Q Consensus 593 --~~~-------------~-----------------~-~~~~~~~s~f~-~e~~~~~~~l~~~~~~slvllDE~~~gt~~ 638 (792)
.+. + . .........++ +|.++++.+...+.+|+++|+|||++|.|+
T Consensus 105 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~ 184 (268)
T PRK10419 105 RKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDL 184 (268)
T ss_pred CCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCH
Confidence 000 0 0 00011122233 345556666666899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 639 EDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 639 ~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.....+. .+++.+.+.. +.++|++||+.+.+.
T Consensus 185 ~~~~~~~-~~l~~~~~~~-~~tiiivsH~~~~i~ 216 (268)
T PRK10419 185 VLQAGVI-RLLKKLQQQF-GTACLFITHDLRLVE 216 (268)
T ss_pred HHHHHHH-HHHHHHHHHc-CcEEEEEECCHHHHH
Confidence 8777774 5666665532 579999999998875
No 244
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.34 E-value=6.5e-12 Score=131.80 Aligned_cols=129 Identities=13% Similarity=0.201 Sum_probs=84.9
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh----hcC-----------------------ccccCCcee
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS----HIG-----------------------SFVPADAAT 591 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la----q~g-----------------------~~vpa~~~~ 591 (792)
..+.++++|+.. |++++|+||||+|||||+|.+++..-.. .-| .|+|.....
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNP 96 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCcc
Confidence 457789999988 9999999999999999999998864211 011 122222111
Q ss_pred ee---ccc--------c---cc-------------h----------hhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCC
Q 043119 592 VG---LTD--------S---KH-------------M----------TAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFG 633 (792)
Q Consensus 592 ~~---~~~--------~---~~-------------~----------~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~ 633 (792)
++ +.+ . .. . ....+.++. |.++++.+...+.+|+++|+|||+
T Consensus 97 ~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 176 (252)
T PRK14272 97 FPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPT 176 (252)
T ss_pred CcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 00 000 0 00 0 000122333 345555555667899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 634 KGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 634 ~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+|.|+.....+. .+++.+.+ +.++|++||+.+.+.
T Consensus 177 ~~LD~~~~~~l~-~~l~~~~~---~~tiii~sH~~~~~~ 211 (252)
T PRK14272 177 SALDPASTARIE-DLMTDLKK---VTTIIIVTHNMHQAA 211 (252)
T ss_pred ccCCHHHHHHHH-HHHHHHhc---CCeEEEEeCCHHHHH
Confidence 999998887775 46666653 468999999999765
No 245
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.34 E-value=3.3e-12 Score=130.62 Aligned_cols=125 Identities=18% Similarity=0.102 Sum_probs=80.1
Q ss_pred ceeecCCCcEEEEEcCCCCCchhHHHHHHHHHHHhhcC-------------------------ccccCCceee---eccc
Q 043119 545 DTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIG-------------------------SFVPADAATV---GLTD 596 (792)
Q Consensus 545 ~~~~~~~~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g-------------------------~~vpa~~~~~---~~~~ 596 (792)
+++|+...++++|+||||||||||+|.++++... ..| .|+|.....+ .+.+
T Consensus 16 ~vsl~i~~e~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 94 (214)
T cd03297 16 KIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKP-DGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRE 94 (214)
T ss_pred CceEEEcceeEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHH
Confidence 6666654489999999999999999999876421 111 1233221100 0000
Q ss_pred -----cc----------------------chhhccchhHHH-HHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHH
Q 043119 597 -----SK----------------------HMTAEQSSFMID-LHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGT 648 (792)
Q Consensus 597 -----~~----------------------~~~~~~s~f~~e-~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~ 648 (792)
.. ......+.++.+ .++++.+...+.+|+++|+|||++|.|+.....+. .+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~ 173 (214)
T cd03297 95 NLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLL-PE 173 (214)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HH
Confidence 00 000112333433 34555555667999999999999999998888775 56
Q ss_pred HHHHHhCCCCcEEEEEccChhhhh
Q 043119 649 INYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 649 ~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+..+.+.. +.++|++||+.+.+.
T Consensus 174 l~~~~~~~-~~tiii~sH~~~~~~ 196 (214)
T cd03297 174 LKQIKKNL-NIPVIFVTHDLSEAE 196 (214)
T ss_pred HHHHHHHc-CcEEEEEecCHHHHH
Confidence 66665532 568999999998764
No 246
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.34 E-value=4.3e-12 Score=125.31 Aligned_cols=133 Identities=20% Similarity=0.238 Sum_probs=92.9
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHH------------------------HHhhcCc------cccC
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIV------------------------FLSHIGS------FVPA 587 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~------------------------~laq~g~------~vpa 587 (792)
++....||+++.+ |++++|+||+|||||||||++..++ +.+++|+ .||.
T Consensus 16 ~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r 95 (258)
T COG3638 16 GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPR 95 (258)
T ss_pred CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccc
Confidence 5677889999999 9999999999999999999997643 2344553 2222
Q ss_pred Cce-----------------eeeccc----------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCC
Q 043119 588 DAA-----------------TVGLTD----------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFG 633 (792)
Q Consensus 588 ~~~-----------------~~~~~~----------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~ 633 (792)
... -++++. .+......++.+++. +|.+.+-..+.++.++|-|||.
T Consensus 96 ~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPv 175 (258)
T COG3638 96 LSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPV 175 (258)
T ss_pred cHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcc
Confidence 211 022222 000111234444444 3444444457999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 634 KGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 634 ~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
+++||.....+. .+++.+.+.. +.|+|+.-|+.+++..
T Consensus 176 asLDp~~a~~Vm-~~l~~in~~~-g~Tvi~nLH~vdlA~~ 213 (258)
T COG3638 176 ASLDPESAKKVM-DILKDINQED-GITVIVNLHQVDLAKK 213 (258)
T ss_pred cccChhhHHHHH-HHHHHHHHHc-CCEEEEEechHHHHHH
Confidence 999999999886 4777777654 7899999999999874
No 247
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.34 E-value=5.3e-12 Score=132.90 Aligned_cols=131 Identities=18% Similarity=0.139 Sum_probs=87.2
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH-----------------Hh------------hcCccccCCc
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF-----------------LS------------HIGSFVPADA 589 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~-----------------la------------q~g~~vpa~~ 589 (792)
..+.++++|+.. |++++|+||||||||||+|+++++.- +. +.-.|+|...
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~ 98 (258)
T PRK11701 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHP 98 (258)
T ss_pred ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCc
Confidence 457788999888 99999999999999999999987631 10 0112444432
Q ss_pred ee-----eec-------------cc-----------------c-cchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCC
Q 043119 590 AT-----VGL-------------TD-----------------S-KHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEF 632 (792)
Q Consensus 590 ~~-----~~~-------------~~-----------------~-~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~ 632 (792)
.. +.. .+ . .......+.++. |.++++.+...+.+|+++|+|||
T Consensus 99 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEP 178 (258)
T PRK11701 99 RDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEP 178 (258)
T ss_pred ccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 10 000 00 0 001111233333 44555555566899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 633 GKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 633 ~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
++|+|+.....+. .+++.+.+. .+.++|++||+.+.+.
T Consensus 179 t~~LD~~~~~~l~-~~l~~~~~~-~~~tii~isH~~~~~~ 216 (258)
T PRK11701 179 TGGLDVSVQARLL-DLLRGLVRE-LGLAVVIVTHDLAVAR 216 (258)
T ss_pred cccCCHHHHHHHH-HHHHHHHHh-cCcEEEEEeCCHHHHH
Confidence 9999998887775 466666553 2579999999999875
No 248
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.34 E-value=6.4e-12 Score=131.31 Aligned_cols=129 Identities=13% Similarity=0.078 Sum_probs=84.0
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH--HhhcC---------------------ccccCCceeee--
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF--LSHIG---------------------SFVPADAATVG-- 593 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~--laq~g---------------------~~vpa~~~~~~-- 593 (792)
..+..|++|+.. |++++|+||||||||||+|+++++.- -...| .|+|.....+.
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~t 94 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKS 94 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccccc
Confidence 356779999988 99999999999999999999987631 00111 23343321100
Q ss_pred cc----------------c---cc---------c-------hhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCC
Q 043119 594 LT----------------D---SK---------H-------MTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTL 637 (792)
Q Consensus 594 ~~----------------~---~~---------~-------~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~ 637 (792)
+. + .+ . .....+.++. |.++++.+...+.+|+++|+|||++|+|
T Consensus 95 v~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD 174 (246)
T PRK14269 95 IYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALD 174 (246)
T ss_pred HHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 00 0 00 0 0011122333 3445555555678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 638 TEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 638 ~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+.....+. ..+..+.+ +.++|++||+.+.+.
T Consensus 175 ~~~~~~l~-~~l~~~~~---~~tiii~tH~~~~~~ 205 (246)
T PRK14269 175 PISSGVIE-ELLKELSH---NLSMIMVTHNMQQGK 205 (246)
T ss_pred HHHHHHHH-HHHHHHhC---CCEEEEEecCHHHHH
Confidence 98877774 45555543 568999999998764
No 249
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=7.4e-12 Score=131.26 Aligned_cols=128 Identities=13% Similarity=0.126 Sum_probs=83.9
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh----cC-----------------------ccccCCceee
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH----IG-----------------------SFVPADAATV 592 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq----~g-----------------------~~vpa~~~~~ 592 (792)
.+.++++|+.. |++++|+||||||||||+|.++++.-... .| .|+|.....+
T Consensus 18 ~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 97 (251)
T PRK14249 18 QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPF 97 (251)
T ss_pred eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccC
Confidence 46778999987 99999999999999999999987643210 12 1222221100
Q ss_pred e--ccc----c-------------cc-----------------hhhccchhH-HHHHHHHHHHHhCCCCeEEEEeCCCCC
Q 043119 593 G--LTD----S-------------KH-----------------MTAEQSSFM-IDLHQVGMMLRQATSQSLCLLDEFGKG 635 (792)
Q Consensus 593 ~--~~~----~-------------~~-----------------~~~~~s~f~-~e~~~~~~~l~~~~~~slvllDE~~~g 635 (792)
+ +.+ . +. .......++ ++.++++.+...+.+|+++|+|||++|
T Consensus 98 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~ 177 (251)
T PRK14249 98 PKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSA 177 (251)
T ss_pred cCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 0 000 0 00 000111222 234555555556789999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 636 TLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 636 t~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.|+.....+. .++..+. . +.++|++||+.+.+.
T Consensus 178 LD~~~~~~l~-~~l~~~~-~--~~tilivsh~~~~~~ 210 (251)
T PRK14249 178 LDPVSTMRIE-ELMQELK-Q--NYTIAIVTHNMQQAA 210 (251)
T ss_pred CCHHHHHHHH-HHHHHHh-c--CCEEEEEeCCHHHHH
Confidence 9998888875 4666664 3 579999999998875
No 250
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.33 E-value=5.7e-12 Score=125.43 Aligned_cols=131 Identities=15% Similarity=0.097 Sum_probs=92.5
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh-----cCccccCCc------eeeecc--c----------
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH-----IGSFVPADA------ATVGLT--D---------- 596 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq-----~g~~vpa~~------~~~~~~--~---------- 596 (792)
.+.|+|+|+.. |++++|+|+.||||||+.|.++++.-..+ -|..++... ..+.++ |
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t 100 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT 100 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchh
Confidence 57899999999 99999999999999999999988764432 132222211 001000 0
Q ss_pred --------ccc-----------------------hhhccchhH-HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHH
Q 043119 597 --------SKH-----------------------MTAEQSSFM-IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGL 644 (792)
Q Consensus 597 --------~~~-----------------------~~~~~s~f~-~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l 644 (792)
.+. ..+--..|+ +|.+|++.+-+.+.+|+++|+|||++.+|+.-...|
T Consensus 101 v~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~I 180 (252)
T COG1124 101 VGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI 180 (252)
T ss_pred HHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHH
Confidence 000 000011122 466777777777899999999999999999888888
Q ss_pred HHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 645 LGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 645 ~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
+.++..+.+.. +-+.||+|||..++..
T Consensus 181 -lnlL~~l~~~~-~lt~l~IsHdl~~v~~ 207 (252)
T COG1124 181 -LNLLLELKKER-GLTYLFISHDLALVEH 207 (252)
T ss_pred -HHHHHHHHHhc-CceEEEEeCcHHHHHH
Confidence 56888887753 6799999999999864
No 251
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.33 E-value=1.2e-11 Score=131.29 Aligned_cols=143 Identities=15% Similarity=0.131 Sum_probs=92.8
Q ss_pred CcEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH----hhcC--------------
Q 043119 522 PLLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL----SHIG-------------- 582 (792)
Q Consensus 522 ~~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l----aq~g-------------- 582 (792)
+.+.+++....+ .+..+.++++|+.. |++++|+||||||||||+|++++.... ...|
T Consensus 24 ~~l~~~nl~~~~----~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 24 TALEVRNLNLFY----GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred cEEEEEEEEEEE----CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 356777766554 23467889999988 999999999999999999999876431 0111
Q ss_pred ---------ccccCCceeee--ccc------------ccc--------------h--------hhccchhH-HHHHHHHH
Q 043119 583 ---------SFVPADAATVG--LTD------------SKH--------------M--------TAEQSSFM-IDLHQVGM 616 (792)
Q Consensus 583 ---------~~vpa~~~~~~--~~~------------~~~--------------~--------~~~~s~f~-~e~~~~~~ 616 (792)
.|+|.+...++ +.+ .+. + ......++ ++.++++.
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l 179 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVI 179 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHH
Confidence 13332211000 000 000 0 00111233 34455555
Q ss_pred HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 617 MLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 617 ~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+...+.+++++|+|||++|.|+.....+. .++..+.+ +.++|++||+.+.+.
T Consensus 180 aral~~~p~lllLDEPt~gLD~~~~~~l~-~~L~~~~~---~~tiiivtH~~~~~~ 231 (272)
T PRK14236 180 ARAIAIEPEVLLLDEPTSALDPISTLKIE-ELITELKS---KYTIVIVTHNMQQAA 231 (272)
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHh---CCeEEEEeCCHHHHH
Confidence 55667999999999999999998877774 56666654 368999999998764
No 252
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=2.8e-12 Score=137.21 Aligned_cols=130 Identities=13% Similarity=0.104 Sum_probs=85.2
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh-------------------------cCccccCCce-ee-
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH-------------------------IGSFVPADAA-TV- 592 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq-------------------------~g~~vpa~~~-~~- 592 (792)
.+.++++|+.. |++++|+||||||||||+|+++++..... .-.|+|.... .+
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 104 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLF 104 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhh
Confidence 47789999988 99999999999999999999987642100 0123333310 00
Q ss_pred --eccc------------c--------c-----ch-----hhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHH
Q 043119 593 --GLTD------------S--------K-----HM-----TAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTE 639 (792)
Q Consensus 593 --~~~~------------~--------~-----~~-----~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~ 639 (792)
.+.+ . + .+ ....+.++.++ ++++.+...+.+|+++|||||++|.|+.
T Consensus 105 ~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~ 184 (289)
T PRK13645 105 QETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPK 184 (289)
T ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence 0000 0 0 00 01123344444 4455555567899999999999999998
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 640 DGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 640 ~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
....+. .++..+.+.. +.++|++||+.+.+.
T Consensus 185 ~~~~l~-~~l~~~~~~~-~~tiiiisH~~~~~~ 215 (289)
T PRK13645 185 GEEDFI-NLFERLNKEY-KKRIIMVTHNMDQVL 215 (289)
T ss_pred HHHHHH-HHHHHHHHhc-CCEEEEEecCHHHHH
Confidence 887774 5666665432 579999999998764
No 253
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.33 E-value=2.9e-12 Score=140.54 Aligned_cols=126 Identities=17% Similarity=0.120 Sum_probs=82.1
Q ss_pred ceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh-----cC-------------------ccccCCceeee---ccc
Q 043119 545 DTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH-----IG-------------------SFVPADAATVG---LTD 596 (792)
Q Consensus 545 ~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq-----~g-------------------~~vpa~~~~~~---~~~ 596 (792)
+++|+.. |++++|+||||||||||||+++++.-... .| .|||.....++ +.+
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 95 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRG 95 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHH
Confidence 7888877 99999999999999999999987642110 01 12232221111 000
Q ss_pred -----------------------ccchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 043119 597 -----------------------SKHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYF 652 (792)
Q Consensus 597 -----------------------~~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l 652 (792)
..........++. |.++++.+...+.+|+++|||||++|.|+.....+. ..++.+
T Consensus 96 nl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~-~~L~~l 174 (352)
T PRK11144 96 NLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELL-PYLERL 174 (352)
T ss_pred HHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHH-HHHHHH
Confidence 0000111223333 445555555668999999999999999998888885 466666
Q ss_pred HhCCCCcEEEEEccChhhhh
Q 043119 653 VTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 653 ~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+. .+.++|++||+.+.+.
T Consensus 175 ~~~-~g~tii~vTHd~~~~~ 193 (352)
T PRK11144 175 ARE-INIPILYVSHSLDEIL 193 (352)
T ss_pred HHh-cCCeEEEEecCHHHHH
Confidence 553 2578999999998653
No 254
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=7.3e-12 Score=136.24 Aligned_cols=131 Identities=14% Similarity=0.155 Sum_probs=88.1
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH------h-----------------------hcCccccCCc
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL------S-----------------------HIGSFVPADA 589 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l------a-----------------------q~g~~vpa~~ 589 (792)
..+.++++|+.. |++++|+||||||||||+|+|+++.-. + .+ .|||.+.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i-~~v~Q~~ 98 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNV-SMIFQEP 98 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCE-EEEecCc
Confidence 357889999998 999999999999999999999876420 0 11 1344332
Q ss_pred ee-e----ecc------------------c-----------------c---cchhhccchhHHHH-HHHHHHHHhCCCCe
Q 043119 590 AT-V----GLT------------------D-----------------S---KHMTAEQSSFMIDL-HQVGMMLRQATSQS 625 (792)
Q Consensus 590 ~~-~----~~~------------------~-----------------~---~~~~~~~s~f~~e~-~~~~~~l~~~~~~s 625 (792)
.. + .+. + . +........++.+| ++++.+...+.+|+
T Consensus 99 ~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~ 178 (330)
T PRK15093 99 QSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPR 178 (330)
T ss_pred chhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCC
Confidence 10 0 000 0 0 00000112344444 44555555679999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 626 LCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 626 lvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
++|+|||++|+|+.....+. .++..+.+. .+.++|++||+++++..
T Consensus 179 llilDEPts~LD~~~~~~i~-~lL~~l~~~-~g~tii~itHdl~~v~~ 224 (330)
T PRK15093 179 LLIADEPTNAMEPTTQAQIF-RLLTRLNQN-NNTTILLISHDLQMLSQ 224 (330)
T ss_pred EEEEeCCCCcCCHHHHHHHH-HHHHHHHHh-cCCEEEEEECCHHHHHH
Confidence 99999999999998888885 466667653 26799999999998853
No 255
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=3.8e-12 Score=135.32 Aligned_cols=130 Identities=18% Similarity=0.056 Sum_probs=85.7
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hcCccccCCce-ee---ecc
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------------HIGSFVPADAA-TV---GLT 595 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------------q~g~~vpa~~~-~~---~~~ 595 (792)
.+.++++|+.. |++++|+||||||||||+++++++.... +.-.|+|.... .+ .+.
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 100 (277)
T PRK13642 21 NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVE 100 (277)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHH
Confidence 46789999988 9999999999999999999998664210 11123443321 00 000
Q ss_pred c-----------c-c-----------------chhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHH
Q 043119 596 D-----------S-K-----------------HMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLL 645 (792)
Q Consensus 596 ~-----------~-~-----------------~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~ 645 (792)
+ . + ........++.++ ++++.+...+.+|+++|+|||++|+|+.....+.
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~ 180 (277)
T PRK13642 101 DDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIM 180 (277)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 0 0 0 0001122334344 3344444457899999999999999999988885
Q ss_pred HHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 646 GGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 646 ~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.++..+.+. .+.++|++||+++.+.
T Consensus 181 -~~l~~l~~~-~g~tiil~sH~~~~~~ 205 (277)
T PRK13642 181 -RVIHEIKEK-YQLTVLSITHDLDEAA 205 (277)
T ss_pred -HHHHHHHHh-cCCEEEEEeCCHHHHH
Confidence 566667653 2579999999999874
No 256
>PRK13409 putative ATPase RIL; Provisional
Probab=99.33 E-value=4.2e-12 Score=147.89 Aligned_cols=144 Identities=19% Similarity=0.186 Sum_probs=93.1
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh-------cCccccCCcee---
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH-------IGSFVPADAAT--- 591 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq-------~g~~vpa~~~~--- 591 (792)
.+.+++....+ +.+..++++++.. |++++|+||||||||||+|+++++.-... .-.|+|.....
T Consensus 340 ~l~~~~ls~~~-----~~~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~ 414 (590)
T PRK13409 340 LVEYPDLTKKL-----GDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYD 414 (590)
T ss_pred EEEEcceEEEE-----CCEEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCC
Confidence 35555554432 2234566777767 99999999999999999999987642110 01244543211
Q ss_pred eeccc------------------------ccchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHH
Q 043119 592 VGLTD------------------------SKHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLG 646 (792)
Q Consensus 592 ~~~~~------------------------~~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~ 646 (792)
.++.+ .+......++++. |.++++.+...+.+++++|||||++|.|+.....+.
T Consensus 415 ~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~- 493 (590)
T PRK13409 415 GTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVA- 493 (590)
T ss_pred CcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH-
Confidence 01000 0001112334443 445566666668999999999999999999888885
Q ss_pred HHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 647 GTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 647 ~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
.+++.+.+.. +.++|++||+.+++..
T Consensus 494 ~~l~~l~~~~-g~tviivsHD~~~~~~ 519 (590)
T PRK13409 494 KAIRRIAEER-EATALVVDHDIYMIDY 519 (590)
T ss_pred HHHHHHHHhC-CCEEEEEeCCHHHHHH
Confidence 5777776532 5799999999998753
No 257
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=7.5e-12 Score=131.32 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=83.9
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH-h---hcC-----------------------ccccCCcee
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL-S---HIG-----------------------SFVPADAAT 591 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l-a---q~g-----------------------~~vpa~~~~ 591 (792)
..+.++++|+.. |++++|+||||||||||+|+++++... . +.| .|+|.+...
T Consensus 18 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (252)
T PRK14255 18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNP 97 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCcc
Confidence 356788899887 999999999999999999999875321 0 111 123322110
Q ss_pred ee--ccc------------c-----cc-----------------hhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCC
Q 043119 592 VG--LTD------------S-----KH-----------------MTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGK 634 (792)
Q Consensus 592 ~~--~~~------------~-----~~-----------------~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~ 634 (792)
++ +.+ . +. .......++. +.++++.+...+.+|+++|+|||++
T Consensus 98 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~ 177 (252)
T PRK14255 98 FPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTS 177 (252)
T ss_pred CCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 00 000 0 00 0001122333 3344555555678999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 635 GTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 635 gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|.|+.....+. .+++.+.+ +.++|++||+.+.+.
T Consensus 178 ~LD~~~~~~l~-~~l~~~~~---~~tii~vsH~~~~~~ 211 (252)
T PRK14255 178 ALDPISSTQIE-NMLLELRD---QYTIILVTHSMHQAS 211 (252)
T ss_pred cCCHHHHHHHH-HHHHHHHh---CCEEEEEECCHHHHH
Confidence 99999888885 46666654 358999999998864
No 258
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.33 E-value=5.5e-12 Score=146.35 Aligned_cols=66 Identities=14% Similarity=0.068 Sum_probs=49.4
Q ss_pred chhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 605 SSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 605 s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
++++.++ ++++.+...+.+|+++|||||++|.|+.....+. .+++.+.+. .+.++|++||+.+.+.
T Consensus 167 ~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~-~g~tviivtHd~~~~~ 233 (520)
T TIGR03269 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVH-NALEEAVKA-SGISMVLTSHWPEVIE 233 (520)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHH-HHHHHHHHh-cCcEEEEEeCCHHHHH
Confidence 3444444 4445555557899999999999999998888885 566666543 2579999999998764
No 259
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=4.8e-12 Score=131.48 Aligned_cols=129 Identities=17% Similarity=0.173 Sum_probs=84.4
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh--------------------cCccccCCceee--ecc-
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH--------------------IGSFVPADAATV--GLT- 595 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq--------------------~g~~vpa~~~~~--~~~- 595 (792)
..+.++++++.. |++++|+||||||||||+|+++++....+ .-.|+|.....+ .+.
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~ 93 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGY 93 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHH
Confidence 346778899887 99999999999999999999987652111 011333321100 000
Q ss_pred -------c-c-c---------ch---------------hhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHH
Q 043119 596 -------D-S-K---------HM---------------TAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDG 641 (792)
Q Consensus 596 -------~-~-~---------~~---------------~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~ 641 (792)
+ . + .+ ......++. +.++++.+...+.+|+++|+|||++|.|+...
T Consensus 94 nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~ 173 (236)
T cd03253 94 NIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTE 173 (236)
T ss_pred HHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 0 0 0 00 000123333 44555555666899999999999999999888
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 642 IGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 642 ~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+. .++..+.+ +.++|++||+.+.+.
T Consensus 174 ~~l~-~~l~~~~~---~~tiii~sh~~~~~~ 200 (236)
T cd03253 174 REIQ-AALRDVSK---GRTTIVIAHRLSTIV 200 (236)
T ss_pred HHHH-HHHHHhcC---CCEEEEEcCCHHHHH
Confidence 7775 45655543 568999999998874
No 260
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=4.6e-12 Score=131.42 Aligned_cols=129 Identities=19% Similarity=0.157 Sum_probs=84.8
Q ss_pred eccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh------------------cCccccCCceeee---ccc---
Q 043119 542 IPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH------------------IGSFVPADAATVG---LTD--- 596 (792)
Q Consensus 542 v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq------------------~g~~vpa~~~~~~---~~~--- 596 (792)
+.++++|+.. |++++|+||||+|||||+|.++++.-... .-.++|.....++ +.+
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 93 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIA 93 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHH
Confidence 5678888887 99999999999999999999987632111 0113333221110 000
Q ss_pred -----c---------------------cchhhccchhH-HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHH
Q 043119 597 -----S---------------------KHMTAEQSSFM-IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTI 649 (792)
Q Consensus 597 -----~---------------------~~~~~~~s~f~-~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~ 649 (792)
. ........+++ +|.++++.+...+.+++++++|||++|.|+.....+ +.++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l-~~~l 172 (235)
T cd03299 94 YGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKL-REEL 172 (235)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHH-HHHH
Confidence 0 00000112333 344556666666799999999999999999888877 4566
Q ss_pred HHHHhCCCCcEEEEEccChhhhh
Q 043119 650 NYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 650 ~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+.+... .++++|++||+++.+.
T Consensus 173 ~~~~~~-~~~tili~tH~~~~~~ 194 (235)
T cd03299 173 KKIRKE-FGVTVLHVTHDFEEAW 194 (235)
T ss_pred HHHHHh-cCCEEEEEecCHHHHH
Confidence 666553 2579999999998764
No 261
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.32 E-value=1.2e-11 Score=130.67 Aligned_cols=129 Identities=12% Similarity=0.053 Sum_probs=84.8
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH-------------------hhcCccccCCceee-------
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL-------------------SHIGSFVPADAATV------- 592 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l-------------------aq~g~~vpa~~~~~------- 592 (792)
..+.++++|+.. |++++|+||||||||||+|+++++... ...-.+||.+..-+
T Consensus 17 ~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~n 96 (275)
T cd03289 17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKN 96 (275)
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHH
Confidence 457889999998 999999999999999999999877421 01113444433211
Q ss_pred -ec---cc-cc------------ch---hh--------ccchhHHHHHH-HHHHHHhCCCCeEEEEeCCCCCCCHHHHHH
Q 043119 593 -GL---TD-SK------------HM---TA--------EQSSFMIDLHQ-VGMMLRQATSQSLCLLDEFGKGTLTEDGIG 643 (792)
Q Consensus 593 -~~---~~-~~------------~~---~~--------~~s~f~~e~~~-~~~~l~~~~~~slvllDE~~~gt~~~~~~~ 643 (792)
.. .+ .+ .. .. +-+.|+.++++ +..+...+.+++++|||||++|.|+.....
T Consensus 97 l~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~ 176 (275)
T cd03289 97 LDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176 (275)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHH
Confidence 00 00 00 00 00 11225555544 444444478999999999999999988877
Q ss_pred HHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 644 LLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 644 l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+.. ++..+.. ++++|++||+++.+.
T Consensus 177 l~~-~l~~~~~---~~tii~isH~~~~i~ 201 (275)
T cd03289 177 IRK-TLKQAFA---DCTVILSEHRIEAML 201 (275)
T ss_pred HHH-HHHHhcC---CCEEEEEECCHHHHH
Confidence 754 4544432 579999999998764
No 262
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.32 E-value=1.4e-11 Score=130.17 Aligned_cols=141 Identities=14% Similarity=0.129 Sum_probs=88.2
Q ss_pred EEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH----hhcC----------------
Q 043119 524 LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL----SHIG---------------- 582 (792)
Q Consensus 524 l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l----aq~g---------------- 582 (792)
|.+++....+ .+..+.++++|+.. |++++|+||||||||||+|+++++.-. ...|
T Consensus 11 l~i~~v~~~~----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 11 LRTENLNVYY----GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEeeeEEEE----CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4555554333 12346778999987 999999999999999999999876421 0112
Q ss_pred -------ccccCCceeee--ccc-----cc------c---------------------hhhccchhHH-HHHHHHHHHHh
Q 043119 583 -------SFVPADAATVG--LTD-----SK------H---------------------MTAEQSSFMI-DLHQVGMMLRQ 620 (792)
Q Consensus 583 -------~~vpa~~~~~~--~~~-----~~------~---------------------~~~~~s~f~~-e~~~~~~~l~~ 620 (792)
.|+|.....++ +.+ .. . .......++. |.++++.+...
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral 166 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAI 166 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 12222111000 000 00 0 0000112332 33445555555
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 621 ATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 621 ~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+.+|+++|||||++|.|+.....+. .++..+.+ +.++|++||+.+.+.
T Consensus 167 ~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~---~~tvi~vtH~~~~~~ 214 (264)
T PRK14243 167 AVQPEVILMDEPCSALDPISTLRIE-ELMHELKE---QYTIIIVTHNMQQAA 214 (264)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHhc---CCEEEEEecCHHHHH
Confidence 7899999999999999998888874 56666654 358999999998765
No 263
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.32 E-value=8e-12 Score=144.64 Aligned_cols=129 Identities=13% Similarity=0.139 Sum_probs=87.4
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------------------h--hcCccccCCceee---e
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------------------S--HIGSFVPADAATV---G 593 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------------------a--q~g~~vpa~~~~~---~ 593 (792)
..+.++++|+.. |++++|+||||||||||||+++++... . ++ .|||.....+ .
T Consensus 18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i-~~v~q~~~~~~~~t 96 (510)
T PRK09700 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI-GIIYQELSVIDELT 96 (510)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe-EEEeecccccCCCc
Confidence 457789999988 999999999999999999999876421 0 12 2344331100 0
Q ss_pred cc-------------------c-----------------ccchhhccchhHHHHH-HHHHHHHhCCCCeEEEEeCCCCCC
Q 043119 594 LT-------------------D-----------------SKHMTAEQSSFMIDLH-QVGMMLRQATSQSLCLLDEFGKGT 636 (792)
Q Consensus 594 ~~-------------------~-----------------~~~~~~~~s~f~~e~~-~~~~~l~~~~~~slvllDE~~~gt 636 (792)
+. + ........++++.+++ +++.+...+.+|+++|+|||++|.
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~L 176 (510)
T PRK09700 97 VLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176 (510)
T ss_pred HHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 00 0 0000111344555444 444445557899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 637 LTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 637 ~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|+.....+. .++..+.+. +.++|++||+.+.+.
T Consensus 177 D~~~~~~l~-~~l~~l~~~--g~tiiivsHd~~~~~ 209 (510)
T PRK09700 177 TNKEVDYLF-LIMNQLRKE--GTAIVYISHKLAEIR 209 (510)
T ss_pred CHHHHHHHH-HHHHHHHhC--CCEEEEEeCCHHHHH
Confidence 998888885 577777664 679999999988764
No 264
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=7.8e-12 Score=131.37 Aligned_cols=129 Identities=19% Similarity=0.182 Sum_probs=84.8
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhc------C---------------------ccccCCce
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHI------G---------------------SFVPADAA 590 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~------g---------------------~~vpa~~~ 590 (792)
+..+.+|++|... |++++|+||||||||||+|.|++.... +. | .|+|....
T Consensus 22 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~-~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~ 100 (257)
T PRK14246 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEI-YDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPN 100 (257)
T ss_pred CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCc
Confidence 3456789999987 999999999999999999999876421 11 1 12222211
Q ss_pred ee---eccc------------cc--------------ch--------hhccchhHH-HHHHHHHHHHhCCCCeEEEEeCC
Q 043119 591 TV---GLTD------------SK--------------HM--------TAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEF 632 (792)
Q Consensus 591 ~~---~~~~------------~~--------------~~--------~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~ 632 (792)
.+ .+.+ .+ .+ ......++. |.++++.+...+.+|+++|+|||
T Consensus 101 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEP 180 (257)
T PRK14246 101 PFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEP 180 (257)
T ss_pred cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 10 0000 00 00 001122333 33455555556799999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 633 GKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 633 ~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
++|+|+.....+. .++..+.+ ++++|++||+.+.+.
T Consensus 181 t~~LD~~~~~~l~-~~l~~~~~---~~tiilvsh~~~~~~ 216 (257)
T PRK14246 181 TSMIDIVNSQAIE-KLITELKN---EIAIVIVSHNPQQVA 216 (257)
T ss_pred CccCCHHHHHHHH-HHHHHHhc---CcEEEEEECCHHHHH
Confidence 9999998887774 56666643 469999999998774
No 265
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=1.5e-11 Score=132.95 Aligned_cols=147 Identities=18% Similarity=0.138 Sum_probs=95.1
Q ss_pred CcEEEecccceeeecc-cCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------------
Q 043119 522 PLLDIQNGRHVLQEMT-VDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS-------------------- 579 (792)
Q Consensus 522 ~~l~i~~~~hp~~~~~-~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la-------------------- 579 (792)
..|.+++...-+-... ....+.++++|+.. |++++|+||||||||||+|.++++....
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 4577777765442110 11358899999988 9999999999999999999998653211
Q ss_pred -----------------hcCccccCCce-e-----------eecc----c-----------------c-cchhhccchhH
Q 043119 580 -----------------HIGSFVPADAA-T-----------VGLT----D-----------------S-KHMTAEQSSFM 608 (792)
Q Consensus 580 -----------------q~g~~vpa~~~-~-----------~~~~----~-----------------~-~~~~~~~s~f~ 608 (792)
++ .|||.... . ++.. + . .........++
T Consensus 100 ~~~~~~~~~~~~~~~~~~i-g~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS 178 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRV-SMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLS 178 (320)
T ss_pred cccccccccchHHHHHhcE-EEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCC
Confidence 01 13333210 0 0000 0 0 00011112333
Q ss_pred H-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 609 I-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 609 ~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
. |.++++.+...+.+|+++|||||++|+|+.....+. .++..+.++ +.++|++||+++.+.
T Consensus 179 gGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~-~~L~~l~~~--g~TiiivtHd~~~~~ 240 (320)
T PRK13631 179 GGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMM-QLILDAKAN--NKTVFVITHTMEHVL 240 (320)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHH-HHHHHHHHC--CCEEEEEecCHHHHH
Confidence 3 445555555668999999999999999998888885 566666654 679999999998654
No 266
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.31 E-value=7.9e-12 Score=128.18 Aligned_cols=129 Identities=12% Similarity=0.114 Sum_probs=85.2
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC-------------------------ccccCCceee--
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIG-------------------------SFVPADAATV-- 592 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g-------------------------~~vpa~~~~~-- 592 (792)
.+.++++|+.. |++++|+||||||||||||++++.... ..| .|+|.+...+
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (218)
T cd03290 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT-LEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNA 93 (218)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCeEEECCcccccccccccchhhcceEEEEcCCCccccc
Confidence 46778899887 999999999999999999999876421 111 1233221100
Q ss_pred eccc----------c--cc----------h-----------hhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCH
Q 043119 593 GLTD----------S--KH----------M-----------TAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLT 638 (792)
Q Consensus 593 ~~~~----------~--~~----------~-----------~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~ 638 (792)
.+.+ . +. + ......++.++ ++++.+...+.+|+++|+|||++|.|+
T Consensus 94 t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~ 173 (218)
T cd03290 94 TVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDI 173 (218)
T ss_pred cHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCH
Confidence 0000 0 00 0 00122344444 445555555789999999999999999
Q ss_pred HHHHHHHHH-HHHHHHhCCCCcEEEEEccChhhhh
Q 043119 639 EDGIGLLGG-TINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 639 ~~~~~l~~~-~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.....+... +++.+.+. +.++|++||+.+...
T Consensus 174 ~~~~~l~~~~ll~~~~~~--~~tii~~sH~~~~~~ 206 (218)
T cd03290 174 HLSDHLMQEGILKFLQDD--KRTLVLVTHKLQYLP 206 (218)
T ss_pred HHHHHHHHHHHHHHHhcC--CCEEEEEeCChHHHh
Confidence 888888653 66666553 579999999998763
No 267
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=1.5e-11 Score=129.60 Aligned_cols=143 Identities=14% Similarity=0.143 Sum_probs=89.9
Q ss_pred EEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh----hcC----------------
Q 043119 524 LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS----HIG---------------- 582 (792)
Q Consensus 524 l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la----q~g---------------- 582 (792)
|.+++...-+ .+..+.++++|+.. |++++|+||||||||||||.++++.-.. ..|
T Consensus 8 l~~~nl~~~~----~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 8 IKVNNLSFYY----DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred EEEeeEEEEe----CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 5555555433 12356788999988 9999999999999999999998875421 112
Q ss_pred -------ccccCCceee--ecc-------------cc-c--c------------------hhhccchhHHHH-HHHHHHH
Q 043119 583 -------SFVPADAATV--GLT-------------DS-K--H------------------MTAEQSSFMIDL-HQVGMML 618 (792)
Q Consensus 583 -------~~vpa~~~~~--~~~-------------~~-~--~------------------~~~~~s~f~~e~-~~~~~~l 618 (792)
.|+|.+...+ .+. +. + . .......++.++ ++++.+.
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 163 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIAR 163 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHH
Confidence 1122211100 000 00 0 0 000112233333 4444455
Q ss_pred HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 619 RQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 619 ~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+.+|+++|||||++|.|+.....+. ..+..+.... +.++|++||+++.+.
T Consensus 164 al~~~p~vllLDEP~~~LD~~~~~~l~-~~l~~l~~~~-~~tiiivsH~~~~i~ 215 (261)
T PRK14258 164 ALAVKPKVLLMDEPCFGLDPIASMKVE-SLIQSLRLRS-ELTMVIVSHNLHQVS 215 (261)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHhC-CCEEEEEECCHHHHH
Confidence 557899999999999999998877774 4566655421 579999999999875
No 268
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.31 E-value=5.1e-12 Score=145.61 Aligned_cols=144 Identities=17% Similarity=0.129 Sum_probs=93.0
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC-------------------
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIG------------------- 582 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g------------------- 582 (792)
.+.+++....+ .+..+.++++|+.. |++++|+||||||||||+|.+++......-|
T Consensus 260 ~l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~ 335 (490)
T PRK10938 260 RIVLNNGVVSY----NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIK 335 (490)
T ss_pred eEEEeceEEEE----CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHH
Confidence 46666665444 23457889999988 9999999999999999999998753210011
Q ss_pred ---ccccCCcee-e------------e------cc---c----------------cc-chhhccchhHHHH-HHHHHHHH
Q 043119 583 ---SFVPADAAT-V------------G------LT---D----------------SK-HMTAEQSSFMIDL-HQVGMMLR 619 (792)
Q Consensus 583 ---~~vpa~~~~-~------------~------~~---~----------------~~-~~~~~~s~f~~e~-~~~~~~l~ 619 (792)
.|+|.+... . + .. + .. ......++++.++ ++++.+..
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~a 415 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRA 415 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHH
Confidence 123221100 0 0 00 0 00 0011123444444 44555555
Q ss_pred hCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 620 QATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 620 ~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+.+|+++|+|||++|.|+.....+. .++..+.+.+ +.++|++||+.+.+.
T Consensus 416 l~~~p~lllLDEPt~gLD~~~~~~l~-~~L~~l~~~~-~~tviivsHd~~~~~ 466 (490)
T PRK10938 416 LVKHPTLLILDEPLQGLDPLNRQLVR-RFVDVLISEG-ETQLLFVSHHAEDAP 466 (490)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHH-HHHHHHHhcC-CcEEEEEecchhhhh
Confidence 57899999999999999999888885 5676776542 357999999998864
No 269
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=2e-11 Score=128.59 Aligned_cols=141 Identities=14% Similarity=0.134 Sum_probs=88.7
Q ss_pred EEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh----hcC----------------
Q 043119 524 LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS----HIG---------------- 582 (792)
Q Consensus 524 l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la----q~g---------------- 582 (792)
+.+++....+ .+..+.++++|+.. |++++|+||||||||||+|.++++.-.. ..|
T Consensus 8 l~~~~l~~~~----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 8 IKVKDLSFYY----NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred EEEEEEEEEE----CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 4555544333 12346789999988 9999999999999999999999864321 012
Q ss_pred -------ccccCCceeee--cc-------------c-cc---c-----------------hhhccchhHH-HHHHHHHHH
Q 043119 583 -------SFVPADAATVG--LT-------------D-SK---H-----------------MTAEQSSFMI-DLHQVGMML 618 (792)
Q Consensus 583 -------~~vpa~~~~~~--~~-------------~-~~---~-----------------~~~~~s~f~~-e~~~~~~~l 618 (792)
.|+|.+...++ +. + .+ . .......++. +.++++.+.
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 163 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIAR 163 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHH
Confidence 12222211000 00 0 00 0 0001122333 344555555
Q ss_pred HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 619 RQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 619 ~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+.+|+++|||||++|.|+.....+. .++..+.+ +.++|++||+++.+.
T Consensus 164 al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~---~~tiii~tH~~~~i~ 213 (259)
T PRK14260 164 ALAIKPKVLLMDEPCSALDPIATMKVE-ELIHSLRS---ELTIAIVTHNMQQAT 213 (259)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHH-HHHHHHhc---CCEEEEEeCCHHHHH
Confidence 567899999999999999998887774 46666654 368999999998875
No 270
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=1.2e-11 Score=130.64 Aligned_cols=142 Identities=13% Similarity=0.100 Sum_probs=90.7
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--h--hcC---------------
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--S--HIG--------------- 582 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--a--q~g--------------- 582 (792)
.|.+++....+ .++.+.++++|+.. |++++|+||||||||||+|+++++.-. . .-|
T Consensus 16 ~l~~~~l~~~~----~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~ 91 (265)
T PRK14252 16 KSEVNKLNFYY----GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91 (265)
T ss_pred eEEEEEEEEEE----CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence 45666655443 23457889999988 999999999999999999999876321 0 011
Q ss_pred ----------ccccCCceeee--ccc--------c---------cc-----------------hhhccchhHH-HHHHHH
Q 043119 583 ----------SFVPADAATVG--LTD--------S---------KH-----------------MTAEQSSFMI-DLHQVG 615 (792)
Q Consensus 583 ----------~~vpa~~~~~~--~~~--------~---------~~-----------------~~~~~s~f~~-e~~~~~ 615 (792)
.|+|.....+. +.+ . +. .......++. +.++++
T Consensus 92 ~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 171 (265)
T PRK14252 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLC 171 (265)
T ss_pred cCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHH
Confidence 13333211000 000 0 00 0001122333 334455
Q ss_pred HHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 616 MMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 616 ~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+...+.+++++|+|||++|.|+.....+. .++..+.. +.++|++||+.+.+.
T Consensus 172 laral~~~p~llllDEPt~gLD~~~~~~l~-~~l~~l~~---~~tiiivth~~~~~~ 224 (265)
T PRK14252 172 IARALATDPEILLFDEPTSALDPIATASIE-ELISDLKN---KVTILIVTHNMQQAA 224 (265)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHh---CCEEEEEecCHHHHH
Confidence 555567899999999999999998887775 46666654 468999999998875
No 271
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.31 E-value=8e-12 Score=144.26 Aligned_cols=129 Identities=16% Similarity=0.122 Sum_probs=86.6
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh----------------------hcCccccCCceee---e
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS----------------------HIGSFVPADAATV---G 593 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la----------------------q~g~~vpa~~~~~---~ 593 (792)
..+.++++|+.. |++++|+||||||||||||+++++.... ++| |||.....+ .
T Consensus 17 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~-~v~q~~~~~~~~t 95 (501)
T PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA-IIYQELHLVPEMT 95 (501)
T ss_pred EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE-EEEechhccCCCC
Confidence 356789999988 9999999999999999999998764210 121 333321100 0
Q ss_pred c---------------cc-----------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHH
Q 043119 594 L---------------TD-----------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTED 640 (792)
Q Consensus 594 ~---------------~~-----------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~ 640 (792)
+ .+ ........++++.++ ++++.+...+.+|+++|+|||++|.|+..
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 175 (501)
T PRK11288 96 VAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSARE 175 (501)
T ss_pred HHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHH
Confidence 0 00 000011123444444 44555555678999999999999999988
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 641 GIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 641 ~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
...+. .++..+.+. +.++|++||+.+.+.
T Consensus 176 ~~~l~-~~l~~~~~~--g~tiiiitHd~~~~~ 204 (501)
T PRK11288 176 IEQLF-RVIRELRAE--GRVILYVSHRMEEIF 204 (501)
T ss_pred HHHHH-HHHHHHHhC--CCEEEEEeCCHHHHH
Confidence 88874 566666654 679999999998764
No 272
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.30 E-value=1.7e-11 Score=129.91 Aligned_cols=141 Identities=17% Similarity=0.187 Sum_probs=89.4
Q ss_pred EEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH----hhcC----------------
Q 043119 524 LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL----SHIG---------------- 582 (792)
Q Consensus 524 l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l----aq~g---------------- 582 (792)
+.+++....+ .+..+.++++|+.. |++++|+||||||||||+|+|+++.-. ...|
T Consensus 25 l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 25 FDTQNLNLWY----GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEeeeEEEE----CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5555554332 12356789999988 999999999999999999999987531 1112
Q ss_pred -------ccccCCceeee--ccc-----------cc--c----h-----------------hhccchhHH-HHHHHHHHH
Q 043119 583 -------SFVPADAATVG--LTD-----------SK--H----M-----------------TAEQSSFMI-DLHQVGMML 618 (792)
Q Consensus 583 -------~~vpa~~~~~~--~~~-----------~~--~----~-----------------~~~~s~f~~-e~~~~~~~l 618 (792)
.|+|.+...+. +.+ .+ . . ......++. |.++++.+.
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~lar 180 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIAR 180 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHH
Confidence 12222211000 000 00 0 0 000112232 334455555
Q ss_pred HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 619 RQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 619 ~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+.+++++|+|||++|.|+.....+. .++..+.+ +.++|++||+.+.+.
T Consensus 181 aL~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~---~~tiiivsH~~~~i~ 230 (271)
T PRK14238 181 CLAIEPDVILMDEPTSALDPISTLKVE-ELVQELKK---DYSIIIVTHNMQQAA 230 (271)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHc---CCEEEEEEcCHHHHH
Confidence 557899999999999999998888875 46666654 368999999998865
No 273
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=1.3e-11 Score=131.13 Aligned_cols=142 Identities=11% Similarity=0.085 Sum_probs=91.8
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh----hcC---------------
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS----HIG--------------- 582 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la----q~g--------------- 582 (792)
.+.+++...-+ .+..+.++++|+.. |++++|+||||||||||+|+++++.-.. ..|
T Consensus 21 ~l~i~nl~~~~----~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 21 AMAAVNLTLGF----AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred EEEEeeEEEEE----CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 45666665544 23567889999988 9999999999999999999998764310 111
Q ss_pred -------ccccCCceeee--cc-------------cc-cc------------h--------hhccchhHH-HHHHHHHHH
Q 043119 583 -------SFVPADAATVG--LT-------------DS-KH------------M--------TAEQSSFMI-DLHQVGMML 618 (792)
Q Consensus 583 -------~~vpa~~~~~~--~~-------------~~-~~------------~--------~~~~s~f~~-e~~~~~~~l 618 (792)
.|+|.+...+. +. +. .. + ......++. |.++++.+.
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAr 176 (276)
T PRK14271 97 LEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLAR 176 (276)
T ss_pred HHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHH
Confidence 13333211000 00 00 00 0 001122333 445555555
Q ss_pred HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 619 RQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 619 ~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+.+|.++|+|||++|.|+.....+. .++..+.+ +.++|++||+.+.+.
T Consensus 177 al~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~---~~tiiivsH~~~~~~ 226 (276)
T PRK14271 177 TLAVNPEVLLLDEPTSALDPTTTEKIE-EFIRSLAD---RLTVIIVTHNLAQAA 226 (276)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHHhc---CCEEEEEeCCHHHHH
Confidence 567899999999999999998887775 46666654 368999999998764
No 274
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=7.1e-11 Score=139.63 Aligned_cols=140 Identities=21% Similarity=0.181 Sum_probs=90.2
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh----------hcCccccCCce-
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS----------HIGSFVPADAA- 590 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la----------q~g~~vpa~~~- 590 (792)
.|.+++....+ .+..+.++++|... |++++|+||||||||||||++++..... .+| |+|....
T Consensus 312 ~l~~~~l~~~y----~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig-y~~Q~~~~ 386 (638)
T PRK10636 312 LLKMEKVSAGY----GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLG-YFAQHQLE 386 (638)
T ss_pred eEEEEeeEEEe----CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEE-EecCcchh
Confidence 35555544333 24567889999988 9999999999999999999998764211 122 4444311
Q ss_pred eee----ccc------c------------------cchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHH
Q 043119 591 TVG----LTD------S------------------KHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDG 641 (792)
Q Consensus 591 ~~~----~~~------~------------------~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~ 641 (792)
.+. +.+ . .......+++++++ ++++.+...+.++.++|||||++|.|+...
T Consensus 387 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~ 466 (638)
T PRK10636 387 FLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMR 466 (638)
T ss_pred hCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 000 000 0 00111234444444 555555556789999999999999999888
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 642 IGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 642 ~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
..+.. ++..+ . + ++|++||+.+++..
T Consensus 467 ~~l~~-~L~~~---~-g-tvi~vSHd~~~~~~ 492 (638)
T PRK10636 467 QALTE-ALIDF---E-G-ALVVVSHDRHLLRS 492 (638)
T ss_pred HHHHH-HHHHc---C-C-eEEEEeCCHHHHHH
Confidence 77754 33333 2 3 89999999998753
No 275
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=2.2e-11 Score=127.59 Aligned_cols=129 Identities=16% Similarity=0.182 Sum_probs=83.9
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH--H--hhcC-----------------------ccccCCcee
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF--L--SHIG-----------------------SFVPADAAT 591 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~--l--aq~g-----------------------~~vpa~~~~ 591 (792)
..+.++++|+.. |++++|+||||||||||+|+++++.- . ...| .|+|.+...
T Consensus 16 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14266 16 AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNP 95 (250)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCcc
Confidence 456789999987 99999999999999999999987642 1 1112 223322111
Q ss_pred ee--cc-------------cccc---------------------hhhccchhH-HHHHHHHHHHHhCCCCeEEEEeCCCC
Q 043119 592 VG--LT-------------DSKH---------------------MTAEQSSFM-IDLHQVGMMLRQATSQSLCLLDEFGK 634 (792)
Q Consensus 592 ~~--~~-------------~~~~---------------------~~~~~s~f~-~e~~~~~~~l~~~~~~slvllDE~~~ 634 (792)
+. +. +.+. .......++ ++.++++.+...+.+|+++|+|||++
T Consensus 96 ~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~ 175 (250)
T PRK14266 96 FPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCS 175 (250)
T ss_pred CcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 00 00 0000 000011222 33445555555678999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 635 GTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 635 gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|.|+.....+. .++..+.+ +.++|++||+++.+.
T Consensus 176 gLD~~~~~~l~-~~l~~~~~---~~tiii~sh~~~~~~ 209 (250)
T PRK14266 176 ALDPISTTKIE-DLIHKLKE---DYTIVIVTHNMQQAT 209 (250)
T ss_pred cCCHHHHHHHH-HHHHHHhc---CCeEEEEECCHHHHH
Confidence 99998888774 46666643 468999999998765
No 276
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=1.4e-11 Score=129.71 Aligned_cols=129 Identities=16% Similarity=0.102 Sum_probs=83.9
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH----hhcC-----------------------ccccCCcee
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL----SHIG-----------------------SFVPADAAT 591 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l----aq~g-----------------------~~vpa~~~~ 591 (792)
..+.++++|+.. |++++|+||||||||||+|.++++... ...| .|+|.+...
T Consensus 21 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 100 (261)
T PRK14263 21 FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNP 100 (261)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCcc
Confidence 346678999988 999999999999999999999876532 0111 123222110
Q ss_pred e--eccc----c--------c-------c-----h--------hhccchhHHH-HHHHHHHHHhCCCCeEEEEeCCCCCC
Q 043119 592 V--GLTD----S--------K-------H-----M--------TAEQSSFMID-LHQVGMMLRQATSQSLCLLDEFGKGT 636 (792)
Q Consensus 592 ~--~~~~----~--------~-------~-----~--------~~~~s~f~~e-~~~~~~~l~~~~~~slvllDE~~~gt 636 (792)
+ .+.+ . . . + ......++.+ .++++.+...+.+|+++|+|||++|.
T Consensus 101 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgL 180 (261)
T PRK14263 101 FSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSAL 180 (261)
T ss_pred ccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccC
Confidence 0 0000 0 0 0 0 0001234433 34455555567899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 637 LTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 637 ~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|+.....+. .++..+.+ +.++|++||+++.+.
T Consensus 181 D~~~~~~l~-~~l~~~~~---~~tii~isH~~~~i~ 212 (261)
T PRK14263 181 DPIATRRVE-ELMVELKK---DYTIALVTHNMQQAI 212 (261)
T ss_pred CHHHHHHHH-HHHHHHhc---CCeEEEEeCCHHHHH
Confidence 998888775 46666643 468999999998764
No 277
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.29 E-value=1.1e-11 Score=143.35 Aligned_cols=130 Identities=16% Similarity=0.114 Sum_probs=87.8
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh-hcC----------------------ccccCCceee---
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS-HIG----------------------SFVPADAATV--- 592 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la-q~g----------------------~~vpa~~~~~--- 592 (792)
..+.++++|+.. |++++|+||||||||||||+++++.... ..| .|||.....+
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPEL 93 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCC
Confidence 457789999988 9999999999999999999998764320 111 1344332100
Q ss_pred --------e--------ccc-----------------ccch-hhccchhHHHHHH-HHHHHHhCCCCeEEEEeCCCCCCC
Q 043119 593 --------G--------LTD-----------------SKHM-TAEQSSFMIDLHQ-VGMMLRQATSQSLCLLDEFGKGTL 637 (792)
Q Consensus 593 --------~--------~~~-----------------~~~~-~~~~s~f~~e~~~-~~~~l~~~~~~slvllDE~~~gt~ 637 (792)
+ ..+ .... ....++++.++++ ++.+...+.+|+++|+|||++|.|
T Consensus 94 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD 173 (500)
T TIGR02633 94 SVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLT 173 (500)
T ss_pred cHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 0 000 0000 0113455555544 444445578999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 638 TEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 638 ~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+.....+. .+++.+.+. +.++|++||+.+.+.
T Consensus 174 ~~~~~~l~-~~l~~l~~~--g~tviiitHd~~~~~ 205 (500)
T TIGR02633 174 EKETEILL-DIIRDLKAH--GVACVYISHKLNEVK 205 (500)
T ss_pred HHHHHHHH-HHHHHHHhC--CCEEEEEeCcHHHHH
Confidence 98888885 567777654 679999999988764
No 278
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=1.7e-11 Score=132.85 Aligned_cols=130 Identities=11% Similarity=0.089 Sum_probs=87.3
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH------------------------hhcCccccCCce-ee-
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL------------------------SHIGSFVPADAA-TV- 592 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l------------------------aq~g~~vpa~~~-~~- 592 (792)
..+.+|++|+.. |++++|+||||||||||+|+++++.-. .++ .+||.+.. .+
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i-~~v~Q~~~~~l~ 106 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKI-QIVFQNPYGSLN 106 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCE-EEEEcCchhhcC
Confidence 357889999988 999999999999999999999876421 011 23443321 00
Q ss_pred ---ec-------------ccc------------------cchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCC
Q 043119 593 ---GL-------------TDS------------------KHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTL 637 (792)
Q Consensus 593 ---~~-------------~~~------------------~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~ 637 (792)
.+ .+. +........++.+| ++++.+...+.+|+++|+|||++|+|
T Consensus 107 p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD 186 (327)
T PRK11308 107 PRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186 (327)
T ss_pred CccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCC
Confidence 00 000 00011122344444 45555556688999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 638 TEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 638 ~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+.....+.. ++..+.+. .+.++|++||+++++.
T Consensus 187 ~~~~~~i~~-lL~~l~~~-~g~til~iTHdl~~~~ 219 (327)
T PRK11308 187 VSVQAQVLN-LMMDLQQE-LGLSYVFISHDLSVVE 219 (327)
T ss_pred HHHHHHHHH-HHHHHHHH-cCCEEEEEeCCHHHHH
Confidence 988888854 66666553 2679999999999875
No 279
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=1.3e-11 Score=129.45 Aligned_cols=129 Identities=15% Similarity=0.121 Sum_probs=84.2
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH----hhcC-----------------------ccccCCcee
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL----SHIG-----------------------SFVPADAAT 591 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l----aq~g-----------------------~~vpa~~~~ 591 (792)
..+.++++|+.. |++++|+||||||||||+|+++++.-. ...| .|+|.+...
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 346778999988 999999999999999999999877420 0111 133332111
Q ss_pred ee--ccc----c-------------c----------ch--------hhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCC
Q 043119 592 VG--LTD----S-------------K----------HM--------TAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFG 633 (792)
Q Consensus 592 ~~--~~~----~-------------~----------~~--------~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~ 633 (792)
+. +.+ . + .+ ......++. |.++++.+...+.+++++|+|||+
T Consensus 98 ~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt 177 (251)
T PRK14244 98 FPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPC 177 (251)
T ss_pred ccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 10 000 0 0 00 001112333 344555555567899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 634 KGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 634 ~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+|+|+.....+. .++..+.+ +.++|++||+.+.+.
T Consensus 178 ~~LD~~~~~~l~-~~l~~~~~---~~tiiiisH~~~~~~ 212 (251)
T PRK14244 178 SALDPVATNVIE-NLIQELKK---NFTIIVVTHSMKQAK 212 (251)
T ss_pred ccCCHHHHHHHH-HHHHHHhc---CCeEEEEeCCHHHHH
Confidence 999998777774 56666643 579999999998764
No 280
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.29 E-value=1e-11 Score=134.80 Aligned_cols=131 Identities=11% Similarity=0.102 Sum_probs=87.9
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH------------------------hhcCccccCCce-ee-
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL------------------------SHIGSFVPADAA-TV- 592 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l------------------------aq~g~~vpa~~~-~~- 592 (792)
..+.++++|+.. |++++|+|+||||||||+|+|+++.-. .++ .|||.+.. .+
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i-~~v~Q~~~~~l~ 112 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDI-QMIFQDPLASLN 112 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCce-EEEecCchhhcC
Confidence 357789999988 999999999999999999999865411 011 23433321 00
Q ss_pred ---ec--------------ccc------------------cchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCC
Q 043119 593 ---GL--------------TDS------------------KHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGT 636 (792)
Q Consensus 593 ---~~--------------~~~------------------~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt 636 (792)
.+ .+. +........++.+| ++++.+...+.+|+++|+|||++|+
T Consensus 113 p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~L 192 (331)
T PRK15079 113 PRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSAL 192 (331)
T ss_pred CCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 00 000 00001112334444 4455555568999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 637 LTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 637 ~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
|+.....+. .++..+.+. .+.++|++||+++++..
T Consensus 193 D~~~~~~i~-~lL~~l~~~-~~~til~iTHdl~~~~~ 227 (331)
T PRK15079 193 DVSIQAQVV-NLLQQLQRE-MGLSLIFIAHDLAVVKH 227 (331)
T ss_pred CHHHHHHHH-HHHHHHHHH-cCCEEEEEeCCHHHHHH
Confidence 999888885 466677653 26799999999998753
No 281
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.28 E-value=1e-11 Score=143.15 Aligned_cols=128 Identities=16% Similarity=0.140 Sum_probs=85.5
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh----------------------hcCccccCCceee---ec
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS----------------------HIGSFVPADAATV---GL 594 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la----------------------q~g~~vpa~~~~~---~~ 594 (792)
.+.++++|+.. |++++|+||||||||||+|+++++.-.. ++ .|||.....+ .+
T Consensus 12 ~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i-~~v~q~~~~~~~~tv 90 (491)
T PRK10982 12 KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGI-SMVHQELNLVLQRSV 90 (491)
T ss_pred EeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCE-EEEecccccccCCCH
Confidence 46678999987 9999999999999999999998764210 11 1344332100 00
Q ss_pred c---------------cc-----------------cchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHH
Q 043119 595 T---------------DS-----------------KHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDG 641 (792)
Q Consensus 595 ~---------------~~-----------------~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~ 641 (792)
. +. .......++++.++ ++++.+...+.+|+++|+|||++|.|+...
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~ 170 (491)
T PRK10982 91 MDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEV 170 (491)
T ss_pred HHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Confidence 0 00 00011123444444 444545556789999999999999999888
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 642 IGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 642 ~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+. .++..+.+. +.++|++||+.+.+.
T Consensus 171 ~~l~-~~l~~l~~~--g~tvii~tH~~~~~~ 198 (491)
T PRK10982 171 NHLF-TIIRKLKER--GCGIVYISHKMEEIF 198 (491)
T ss_pred HHHH-HHHHHHHhC--CCEEEEEecCHHHHH
Confidence 8884 567777654 679999999988754
No 282
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=2.2e-11 Score=132.06 Aligned_cols=146 Identities=14% Similarity=0.159 Sum_probs=95.3
Q ss_pred CCcEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH-------hh------------
Q 043119 521 EPLLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL-------SH------------ 580 (792)
Q Consensus 521 ~~~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l-------aq------------ 580 (792)
.+.+.+++...-+-. ....+.++++|+.. |++++|+|||||||||||+++++..-. ++
T Consensus 78 ~~~i~~~nls~~y~~--~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 78 ANVFEIRNFNFWYMN--RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred CceEEEEeeEEEecC--CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 346777777654421 23468899999998 999999999999999999999876532 11
Q ss_pred --------cCccccCCcee----------eec-cc----cc---------------------chhhccchhHHHH-HHHH
Q 043119 581 --------IGSFVPADAAT----------VGL-TD----SK---------------------HMTAEQSSFMIDL-HQVG 615 (792)
Q Consensus 581 --------~g~~vpa~~~~----------~~~-~~----~~---------------------~~~~~~s~f~~e~-~~~~ 615 (792)
.-.|||.+... ++. .+ .+ .+....+.++.+. ++++
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~ 235 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLC 235 (329)
T ss_pred cchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHH
Confidence 01133333211 000 00 00 0011123344444 4444
Q ss_pred HHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 616 MMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 616 ~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+.+.+.+++++|||||++|.|+.....+ ..++..+.+ ++++|++||+++.+.
T Consensus 236 LARAl~~~p~IlLLDEPts~LD~~~~~~i-~~~i~~l~~---~~Tii~iTH~l~~i~ 288 (329)
T PRK14257 236 IARAIALEPEVLLMDEPTSALDPIATAKI-EELILELKK---KYSIIIVTHSMAQAQ 288 (329)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHH-HHHHHHHhc---CCEEEEEeCCHHHHH
Confidence 44445789999999999999999888776 456666654 469999999999865
No 283
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.27 E-value=1.3e-11 Score=126.92 Aligned_cols=118 Identities=18% Similarity=0.129 Sum_probs=77.0
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHh---------------hcCccccCCcee-----eecc----------------
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLS---------------HIGSFVPADAAT-----VGLT---------------- 595 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~la---------------q~g~~vpa~~~~-----~~~~---------------- 595 (792)
|++++|+||||||||||+|.++++.-.. +.-.|+|..... ..+.
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~ 85 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRR 85 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccccC
Confidence 8999999999999999999998764211 011244433210 0000
Q ss_pred c-----------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCC
Q 043119 596 D-----------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDV 657 (792)
Q Consensus 596 ~-----------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~ 657 (792)
+ ........+.++.++ ++++.+...+.+|+++|+|||++|.|+.....+.. +++.+.++
T Consensus 86 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~-~l~~~~~~-- 162 (223)
T TIGR03771 86 PCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTE-LFIELAGA-- 162 (223)
T ss_pred CcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHc--
Confidence 0 000001122333333 44555555679999999999999999998888854 66666654
Q ss_pred CcEEEEEccChhhhh
Q 043119 658 PPKVLVCTHLTELLN 672 (792)
Q Consensus 658 ~~~~l~~TH~~~l~~ 672 (792)
+.++|++||+++.+.
T Consensus 163 ~~tvii~sH~~~~~~ 177 (223)
T TIGR03771 163 GTAILMTTHDLAQAM 177 (223)
T ss_pred CCEEEEEeCCHHHHH
Confidence 579999999998764
No 284
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.27 E-value=8.8e-12 Score=144.88 Aligned_cols=131 Identities=15% Similarity=0.132 Sum_probs=87.0
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh----hcC-------------------------ccccCCc
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS----HIG-------------------------SFVPADA 589 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la----q~g-------------------------~~vpa~~ 589 (792)
..+.++++|+.. |++++|+||||||||||||.++++.-.. ..| .|||...
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 357789999988 9999999999999999999998775320 011 1333331
Q ss_pred e--eee-------------c---cc-----------------cc---chhhccchhHHHH-HHHHHHHHhCCCCeEEEEe
Q 043119 590 A--TVG-------------L---TD-----------------SK---HMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLD 630 (792)
Q Consensus 590 ~--~~~-------------~---~~-----------------~~---~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllD 630 (792)
. ..+ . .+ .+ ......++++.++ ++++.+...+.+|+++|+|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllD 181 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIAD 181 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 1 000 0 00 00 0011123444444 4455555557999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 631 EFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 631 E~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
||++|.|+.....+. .+++.+.+. .+.++|++||+++.+.
T Consensus 182 EPt~~LD~~~~~~l~-~~l~~l~~~-~g~tvi~vtHd~~~~~ 221 (529)
T PRK15134 182 EPTTALDVSVQAQIL-QLLRELQQE-LNMGLLFITHNLSIVR 221 (529)
T ss_pred CCCCccCHHHHHHHH-HHHHHHHHh-cCCeEEEEcCcHHHHH
Confidence 999999998888885 577777653 2578999999998754
No 285
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.27 E-value=1.5e-11 Score=117.81 Aligned_cols=133 Identities=16% Similarity=0.186 Sum_probs=91.8
Q ss_pred cCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH---------------------------hhcCc------
Q 043119 538 VDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL---------------------------SHIGS------ 583 (792)
Q Consensus 538 ~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l---------------------------aq~g~------ 583 (792)
..+.|.+|++++.+ |.++.|+|||||||||||-.++-+.-+ -|-..
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlT 91 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLT 91 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeE
Confidence 35678889999999 999999999999999999988755422 11100
Q ss_pred --------cccCCceeeecccccch-------------hhccchhHHHHHHHHHHHH-hCCCCeEEEEeCCCCCCCHHHH
Q 043119 584 --------FVPADAATVGLTDSKHM-------------TAEQSSFMIDLHQVGMMLR-QATSQSLCLLDEFGKGTLTEDG 641 (792)
Q Consensus 584 --------~vpa~~~~~~~~~~~~~-------------~~~~s~f~~e~~~~~~~l~-~~~~~slvllDE~~~gt~~~~~ 641 (792)
..|-.+.++.--|.+.+ .+-+-.++++.+|.+.+.. .+.+.+.|+||||..++|..-.
T Consensus 92 V~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHs 171 (252)
T COG4604 92 VRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHS 171 (252)
T ss_pred HHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHH
Confidence 11322222222221111 1112334455566665543 3688999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 642 IGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 642 ~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.++. .+++.+++. .+.+++++-||...+.
T Consensus 172 v~iM-k~Lrrla~e-l~KtiviVlHDINfAS 200 (252)
T COG4604 172 VQIM-KILRRLADE-LGKTIVVVLHDINFAS 200 (252)
T ss_pred HHHH-HHHHHHHHH-hCCeEEEEEecccHHH
Confidence 9996 588888764 3679999999999875
No 286
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.27 E-value=1.9e-11 Score=115.66 Aligned_cols=124 Identities=22% Similarity=0.196 Sum_probs=84.8
Q ss_pred ceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCcc---------ccCCcee--------------------eec
Q 043119 545 DTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSF---------VPADAAT--------------------VGL 594 (792)
Q Consensus 545 ~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~---------vpa~~~~--------------------~~~ 594 (792)
.+++..+ |+++.|.||.||||||||+.|++....++.... -|+++.. +|+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl 96 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGL 96 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccC
Confidence 5556666 999999999999999999999987765543222 2443321 111
Q ss_pred cc------------------------ccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHH
Q 043119 595 TD------------------------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTIN 650 (792)
Q Consensus 595 ~~------------------------~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~ 650 (792)
-. .+.+...+|. +|.++.+.+-....+++++++||||+..||.=+.... +++.
T Consensus 97 ~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSG--GqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl-~Lv~ 173 (231)
T COG3840 97 SPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSG--GQRQRVALARCLVREQPILLLDEPFSALDPALRAEML-ALVS 173 (231)
T ss_pred CcccccCHHHHHHHHHHHHHhChhhHhhhCccccCc--hHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHH-HHHH
Confidence 10 0001111222 3455666555668999999999999999998887774 5777
Q ss_pred HHHhCCCCcEEEEEccChhhhh
Q 043119 651 YFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 651 ~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.++... +.|++++||.++-+.
T Consensus 174 ~l~~E~-~~TllmVTH~~~Da~ 194 (231)
T COG3840 174 QLCDER-KMTLLMVTHHPEDAA 194 (231)
T ss_pred HHHHhh-CCEEEEEeCCHHHHH
Confidence 777643 679999999998765
No 287
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.26 E-value=2e-11 Score=121.79 Aligned_cols=132 Identities=17% Similarity=0.160 Sum_probs=89.5
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh---------------hcCccccCCcee---------ee
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS---------------HIGSFVPADAAT---------VG 593 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la---------------q~g~~vpa~~~~---------~~ 593 (792)
..++.+|++|+.. |+.++|+|+|||||||+||.|+++.... -.+.+-|.-... +|
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G 118 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILG 118 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhC
Confidence 3567889999998 9999999999999999999998665321 111122221110 11
Q ss_pred ccc----------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 043119 594 LTD----------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCD 656 (792)
Q Consensus 594 ~~~----------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~ 656 (792)
+.. .+.+....-+++.+| .|++..++...+|+.+||||..+--|+.-...- ..-++.+.++
T Consensus 119 ~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~-~~rl~e~~~~- 196 (249)
T COG1134 119 LTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKC-LERLNELVEK- 196 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHH-HHHHHHHHHc-
Confidence 100 112223355666677 578888888899999999998887777554433 2345556554
Q ss_pred CCcEEEEEccChhhhhc
Q 043119 657 VPPKVLVCTHLTELLNE 673 (792)
Q Consensus 657 ~~~~~l~~TH~~~l~~~ 673 (792)
+.+++++||+++.+..
T Consensus 197 -~~tiv~VSHd~~~I~~ 212 (249)
T COG1134 197 -NKTIVLVSHDLGAIKQ 212 (249)
T ss_pred -CCEEEEEECCHHHHHH
Confidence 4799999999999875
No 288
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.26 E-value=1.3e-11 Score=142.19 Aligned_cols=141 Identities=16% Similarity=0.108 Sum_probs=92.7
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH---------------------hh
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL---------------------SH 580 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l---------------------aq 580 (792)
.|.+++.... ...+.++++|+.. |++++|+||||||||||+|+++++.-. .+
T Consensus 250 ~i~~~~l~~~------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 323 (491)
T PRK10982 250 ILEVRNLTSL------RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323 (491)
T ss_pred EEEEeCcccc------cCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHC
Confidence 4666665432 1236789999988 999999999999999999999865311 00
Q ss_pred cCccccCCcee------e------------------ecccc------------------cchhhccchhHHHH-HHHHHH
Q 043119 581 IGSFVPADAAT------V------------------GLTDS------------------KHMTAEQSSFMIDL-HQVGMM 617 (792)
Q Consensus 581 ~g~~vpa~~~~------~------------------~~~~~------------------~~~~~~~s~f~~e~-~~~~~~ 617 (792)
.-.|+|..... . +..+. +.......+++.++ ++++.+
T Consensus 324 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la 403 (491)
T PRK10982 324 GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIG 403 (491)
T ss_pred CCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHH
Confidence 01244443210 0 00000 00111123444444 445555
Q ss_pred HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 618 LRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 618 l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
...+.+|.++|||||++|.|+.....+. .+++.+.+. +.++|++||+.+.+.
T Consensus 404 ~al~~~p~illLDEPt~gLD~~~~~~~~-~~l~~l~~~--~~tvi~vsHd~~~~~ 455 (491)
T PRK10982 404 RWLLTQPEILMLDEPTRGIDVGAKFEIY-QLIAELAKK--DKGIIIISSEMPELL 455 (491)
T ss_pred HHHhcCCCEEEEcCCCcccChhHHHHHH-HHHHHHHHC--CCEEEEECCChHHHH
Confidence 5567899999999999999999888885 577777765 578999999999875
No 289
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.26 E-value=1.3e-11 Score=157.63 Aligned_cols=128 Identities=12% Similarity=0.152 Sum_probs=89.0
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhcCccccCCceeee---cc
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------------------SHIGSFVPADAATVG---LT 595 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------------------aq~g~~vpa~~~~~~---~~ 595 (792)
+.+.++++++.. |++++|+|||||||||+||+++++... .++| ++|....-++ +.
T Consensus 943 k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG-~~pQ~~~L~~~LTV~ 1021 (2272)
T TIGR01257 943 RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLG-MCPQHNILFHHLTVA 1021 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEE-EEecCCcCCCCCCHH
Confidence 457899999988 999999999999999999999876421 1122 3444321110 00
Q ss_pred c-----------------------------ccchhhccchhHHHHH-HHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHH
Q 043119 596 D-----------------------------SKHMTAEQSSFMIDLH-QVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLL 645 (792)
Q Consensus 596 ~-----------------------------~~~~~~~~s~f~~e~~-~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~ 645 (792)
+ .+......++++++|+ +++.+.+.+.+++++|||||++|.|+..+..+
T Consensus 1022 E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l- 1100 (2272)
T TIGR01257 1022 EHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSI- 1100 (2272)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHH-
Confidence 0 0000111344555554 45555566899999999999999999888888
Q ss_pred HHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 646 GGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 646 ~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+.+++.+. . +.++|++||+++.++
T Consensus 1101 ~~lL~~l~-~--g~TIIltTHdmdea~ 1124 (2272)
T TIGR01257 1101 WDLLLKYR-S--GRTIIMSTHHMDEAD 1124 (2272)
T ss_pred HHHHHHHh-C--CCEEEEEECCHHHHH
Confidence 56777774 2 578999999998875
No 290
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.25 E-value=1.4e-11 Score=142.39 Aligned_cols=129 Identities=14% Similarity=0.103 Sum_probs=86.7
Q ss_pred eccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh---------------------hcCccccCCce--------e
Q 043119 542 IPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS---------------------HIGSFVPADAA--------T 591 (792)
Q Consensus 542 v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la---------------------q~g~~vpa~~~--------~ 591 (792)
+.++++|+.. |++++|+||||||||||||.++++.... ..-.|+|.... .
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t 357 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP 357 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence 4678999988 9999999999999999999998753110 00124554310 0
Q ss_pred e------------ecc-c-----------------c-cchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHH
Q 043119 592 V------------GLT-D-----------------S-KHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTE 639 (792)
Q Consensus 592 ~------------~~~-~-----------------~-~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~ 639 (792)
+ +.. . . .......+.++.++ ++++.+...+.+|+++|||||++|.|+.
T Consensus 358 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~ 437 (510)
T PRK15439 358 LAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437 (510)
T ss_pred HHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChh
Confidence 0 000 0 0 00111123444444 4444445557899999999999999998
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 640 DGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 640 ~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
....+. .++..+.+. +.++|++||+++.+..
T Consensus 438 ~~~~l~-~~l~~l~~~--g~tiIivsHd~~~i~~ 468 (510)
T PRK15439 438 ARNDIY-QLIRSIAAQ--NVAVLFISSDLEEIEQ 468 (510)
T ss_pred HHHHHH-HHHHHHHhC--CCEEEEECCCHHHHHH
Confidence 888885 577777664 5789999999998763
No 291
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=1.9e-11 Score=142.21 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=90.8
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh----------hcCccccCCce-
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS----------HIGSFVPADAA- 590 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la----------q~g~~vpa~~~- 590 (792)
.+.+++....+ .+..+.++++|+.. |++++|+||||||||||||+++++.... .+ .|+|....
T Consensus 319 ~l~~~~l~~~~----~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i-~~~~q~~~~ 393 (530)
T PRK15064 319 ALEVENLTKGF----DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANI-GYYAQDHAY 393 (530)
T ss_pred eEEEEeeEEee----CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEE-EEEcccccc
Confidence 45555555443 23457889999988 9999999999999999999998764210 11 24444321
Q ss_pred e----eeccc-----------c--------------cchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHH
Q 043119 591 T----VGLTD-----------S--------------KHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTED 640 (792)
Q Consensus 591 ~----~~~~~-----------~--------------~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~ 640 (792)
. ..+.+ . .......++++.++ ++++.+...+.+|.++|||||++|.|+..
T Consensus 394 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~ 473 (530)
T PRK15064 394 DFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMES 473 (530)
T ss_pred cCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 0 01100 0 00111234445444 44555555678999999999999999988
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 641 GIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 641 ~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
...+.. +++.+ +.++|++||+.+.+..
T Consensus 474 ~~~l~~-~l~~~-----~~tvi~vsHd~~~~~~ 500 (530)
T PRK15064 474 IESLNM-ALEKY-----EGTLIFVSHDREFVSS 500 (530)
T ss_pred HHHHHH-HHHHC-----CCEEEEEeCCHHHHHH
Confidence 777743 44332 2489999999998753
No 292
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.25 E-value=2.1e-11 Score=144.03 Aligned_cols=148 Identities=11% Similarity=0.099 Sum_probs=94.2
Q ss_pred CcEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh---------------------
Q 043119 522 PLLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------------- 579 (792)
Q Consensus 522 ~~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------------- 579 (792)
+.|.+++...-+-.......+.+|++|+.. |++++|+||||||||||+|+++++.-..
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 345666554433100012357889999988 9999999999999999999998664110
Q ss_pred --------------hcCccccCCce-----eeecc-------------c-----------------c---cchhhccchh
Q 043119 580 --------------HIGSFVPADAA-----TVGLT-------------D-----------------S---KHMTAEQSSF 607 (792)
Q Consensus 580 --------------q~g~~vpa~~~-----~~~~~-------------~-----------------~---~~~~~~~s~f 607 (792)
.+| +||.... .+.+. + . +.......++
T Consensus 91 ~~~~~~~~~~~r~~~ig-~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~L 169 (623)
T PRK10261 91 SEQSAAQMRHVRGADMA-MIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQL 169 (623)
T ss_pred ccCCHHHHHHHhCCCEE-EEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccC
Confidence 111 2333210 00000 0 0 0011123345
Q ss_pred HHHHH-HHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 608 MIDLH-QVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 608 ~~e~~-~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+.+++ +++.+...+.+|+++|+|||++|+|+.....+. .+++.+.+. .+.++|++||+++.+.
T Consensus 170 SgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~-~ll~~l~~~-~g~tvi~itHdl~~~~ 233 (623)
T PRK10261 170 SGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQIL-QLIKVLQKE-MSMGVIFITHDMGVVA 233 (623)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHH-HHHHHHHHh-cCCEEEEEcCCHHHHH
Confidence 55554 445555567899999999999999998888885 577787653 2579999999998753
No 293
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.25 E-value=2.3e-11 Score=140.87 Aligned_cols=141 Identities=9% Similarity=0.048 Sum_probs=93.5
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH----------------------h
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL----------------------S 579 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l----------------------a 579 (792)
.+.+++..... . -+.++++|+.. |++++|+||||||||||||+++++.-. .
T Consensus 265 ~l~~~~l~~~~-----~-~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 338 (510)
T PRK09700 265 VFEVRNVTSRD-----R-KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKK 338 (510)
T ss_pred EEEEeCccccC-----C-CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHC
Confidence 46666665431 1 26789999988 999999999999999999999875311 0
Q ss_pred hcCccccCCc---ee---eecc---------------------c-----------------c-cchhhccchhHHHH-HH
Q 043119 580 HIGSFVPADA---AT---VGLT---------------------D-----------------S-KHMTAEQSSFMIDL-HQ 613 (792)
Q Consensus 580 q~g~~vpa~~---~~---~~~~---------------------~-----------------~-~~~~~~~s~f~~e~-~~ 613 (792)
.+ .|||... .. +++. + . +.......+++.++ ++
T Consensus 339 ~i-~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 417 (510)
T PRK09700 339 GM-AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQK 417 (510)
T ss_pred Cc-EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHH
Confidence 12 2455431 00 0000 0 0 00011123444444 44
Q ss_pred HHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 614 VGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 614 ~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
++.+...+.+|.++|+|||++|.|+.....+. .+++.+.+. +.++|++||+.+.+..
T Consensus 418 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~~--g~tvi~vsHd~~~~~~ 474 (510)
T PRK09700 418 VLISKWLCCCPEVIIFDEPTRGIDVGAKAEIY-KVMRQLADD--GKVILMVSSELPEIIT 474 (510)
T ss_pred HHHHHHHhcCCCEEEECCCCCCcCHHHHHHHH-HHHHHHHHC--CCEEEEEcCCHHHHHh
Confidence 55555557899999999999999998888885 577777654 6789999999988753
No 294
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.25 E-value=2.2e-11 Score=124.29 Aligned_cols=47 Identities=19% Similarity=0.029 Sum_probs=39.0
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 623 SQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 623 ~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+++++|+|||++|+|+.....+. .+++.+.+. +.++|++||+++++.
T Consensus 151 ~~~~lllDEp~~~lD~~~~~~~~-~~l~~~~~~--~~tii~itH~~~~~~ 197 (213)
T cd03279 151 RLEALFIDEGFGTLDPEALEAVA-TALELIRTE--NRMVGVISHVEELKE 197 (213)
T ss_pred CCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhC--CCEEEEEECchHHHH
Confidence 57899999999999998888874 566777654 569999999998875
No 295
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.25 E-value=1.7e-11 Score=143.00 Aligned_cols=128 Identities=17% Similarity=0.151 Sum_probs=85.3
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH-------h---hcCccccCCce-e---eeccc-------
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL-------S---HIGSFVPADAA-T---VGLTD------- 596 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l-------a---q~g~~vpa~~~-~---~~~~~------- 596 (792)
+..+.++++|+.. |++++|+||||||||||||.+++.... . .+ .|+|.... . ..+.+
T Consensus 334 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i-~~v~q~~~~~~~~~tv~e~l~~~~~ 412 (552)
T TIGR03719 334 DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKL-AYVDQSRDALDPNKTVWEEISGGLD 412 (552)
T ss_pred CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEE-EEEeCCccccCCCCcHHHHHHhhcc
Confidence 3468889999988 999999999999999999999865321 1 11 24444321 0 00000
Q ss_pred --------------------cc-chhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 043119 597 --------------------SK-HMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVT 654 (792)
Q Consensus 597 --------------------~~-~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~ 654 (792)
.. ......++++.++ ++++.+...+.+|+++|||||++|.|+.....+. .++..+
T Consensus 413 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~-- 489 (552)
T TIGR03719 413 IIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALE-EALLEF-- 489 (552)
T ss_pred ccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHC--
Confidence 00 0111234555544 4455555567999999999999999998887774 344443
Q ss_pred CCCCcEEEEEccChhhhhc
Q 043119 655 CDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 655 ~~~~~~~l~~TH~~~l~~~ 673 (792)
. + ++|++||+.+.+..
T Consensus 490 -~-~-~viivsHd~~~~~~ 505 (552)
T TIGR03719 490 -A-G-CAVVISHDRWFLDR 505 (552)
T ss_pred -C-C-eEEEEeCCHHHHHH
Confidence 1 3 69999999998753
No 296
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.25 E-value=4.4e-11 Score=125.83 Aligned_cols=129 Identities=14% Similarity=0.039 Sum_probs=84.2
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hcCccccCCceeee-----
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------------HIGSFVPADAATVG----- 593 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------------q~g~~vpa~~~~~~----- 593 (792)
..+.++++|+.. |++++|+||||||||||+|++++..... ..-.|+|.....+.
T Consensus 34 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~ 113 (257)
T cd03288 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRF 113 (257)
T ss_pred CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHH
Confidence 357789999988 9999999999999999999998764210 01123333221100
Q ss_pred ---cccc--c----------ch---------------hhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHH
Q 043119 594 ---LTDS--K----------HM---------------TAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGI 642 (792)
Q Consensus 594 ---~~~~--~----------~~---------------~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~ 642 (792)
.... + .+ ......++. |.++++.+...+.+|+++|+|||++|.|+....
T Consensus 114 nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~ 193 (257)
T cd03288 114 NLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATEN 193 (257)
T ss_pred hcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 0000 0 00 000123333 445566566668999999999999999998766
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 643 GLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 643 ~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+ ..++..+.+ +.++|++||+++.+.
T Consensus 194 ~l-~~~l~~~~~---~~tiii~sh~~~~~~ 219 (257)
T cd03288 194 IL-QKVVMTAFA---DRTVVTIAHRVSTIL 219 (257)
T ss_pred HH-HHHHHHhcC---CCEEEEEecChHHHH
Confidence 66 445555533 579999999999874
No 297
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.25 E-value=1.4e-11 Score=142.41 Aligned_cols=146 Identities=14% Similarity=0.057 Sum_probs=93.4
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh----------------------
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS---------------------- 579 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la---------------------- 579 (792)
.+.+++....+-. ..+..+.++++|+.. |++++|+||||||||||||+++++.-..
T Consensus 257 ~l~~~~l~~~~~~-~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~ 335 (500)
T TIGR02633 257 ILEARNLTCWDVI-NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR 335 (500)
T ss_pred eEEEeCCcccccc-cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence 4666665543200 012346788999988 9999999999999999999998764210
Q ss_pred -hcCccccCCce---e-----------ee----c-----cc-----------------cc-chhhccchhHHHH-HHHHH
Q 043119 580 -HIGSFVPADAA---T-----------VG----L-----TD-----------------SK-HMTAEQSSFMIDL-HQVGM 616 (792)
Q Consensus 580 -q~g~~vpa~~~---~-----------~~----~-----~~-----------------~~-~~~~~~s~f~~e~-~~~~~ 616 (792)
++ .|||.+.. . ++ . .+ .. .......+++.++ ++++.
T Consensus 336 ~~i-~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l 414 (500)
T TIGR02633 336 AGI-AMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVL 414 (500)
T ss_pred CCC-EEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHH
Confidence 11 13333310 0 00 0 00 00 0011123445444 44444
Q ss_pred HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 617 MLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 617 ~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
+...+.+|.++|||||++|.|+.....+. .+++.+.+. +.++|++||+++.+..
T Consensus 415 a~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~--g~tviivsHd~~~~~~ 468 (500)
T TIGR02633 415 AKMLLTNPRVLILDEPTRGVDVGAKYEIY-KLINQLAQE--GVAIIVVSSELAEVLG 468 (500)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHH-HHHHHHHhC--CCEEEEECCCHHHHHH
Confidence 45557899999999999999998888774 577777764 5789999999988753
No 298
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=1.9e-11 Score=141.40 Aligned_cols=146 Identities=14% Similarity=0.071 Sum_probs=94.2
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh----------------------
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS---------------------- 579 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la---------------------- 579 (792)
.+.+++....+- ...+..+.++++|+.. |++++|+||||||||||+|.++++.-..
T Consensus 259 ~l~~~~l~~~~~-~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 259 ILEVRNLTAWDP-VNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred eEEEecCccccc-cccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 456665544320 0012347789999988 9999999999999999999998764210
Q ss_pred -hcCccccCCce------e--------ee----c-----cc-----------------c-cchhhccchhHHHHH-HHHH
Q 043119 580 -HIGSFVPADAA------T--------VG----L-----TD-----------------S-KHMTAEQSSFMIDLH-QVGM 616 (792)
Q Consensus 580 -q~g~~vpa~~~------~--------~~----~-----~~-----------------~-~~~~~~~s~f~~e~~-~~~~ 616 (792)
.+ .|||.... . ++ . .+ . ........+++.+++ +++.
T Consensus 338 ~~i-~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~l 416 (506)
T PRK13549 338 QGI-AMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVL 416 (506)
T ss_pred CCC-EEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHH
Confidence 01 24443310 0 00 0 01 0 000111234444444 4444
Q ss_pred HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 617 MLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 617 ~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
+...+.+|.++|||||++|.|+.....+ ..++..+.+. +.++|++||+++.+..
T Consensus 417 A~al~~~p~lllLDEPt~~LD~~~~~~l-~~~l~~l~~~--g~tvi~~sHd~~~~~~ 470 (506)
T PRK13549 417 AKCLLLNPKILILDEPTRGIDVGAKYEI-YKLINQLVQQ--GVAIIVISSELPEVLG 470 (506)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHH-HHHHHHHHHC--CCEEEEECCCHHHHHH
Confidence 4555789999999999999999888887 4677777764 6799999999988753
No 299
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.25 E-value=6e-11 Score=111.73 Aligned_cols=145 Identities=19% Similarity=0.206 Sum_probs=95.2
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH----------------hhcCccccCCcee-------eecc
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL----------------SHIGSFVPADAAT-------VGLT 595 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l----------------aq~g~~vpa~~~~-------~~~~ 595 (792)
.-|...+++... |.++-|+|..|||||||||+|-.+--. ...|-.+||+.-. ++.+
T Consensus 19 ~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mV 98 (256)
T COG4598 19 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMV 98 (256)
T ss_pred chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHh
Confidence 346678999888 999999999999999999999765422 1234455555321 1110
Q ss_pred c-------------------------cc---------ch---------hhccchhHHHH-HHHHHHHHhCCCCeEEEEeC
Q 043119 596 D-------------------------SK---------HM---------TAEQSSFMIDL-HQVGMMLRQATSQSLCLLDE 631 (792)
Q Consensus 596 ~-------------------------~~---------~~---------~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE 631 (792)
- ++ .+ ..--...+++. ++.+.+-+.+-+|.++|+||
T Consensus 99 FQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDE 178 (256)
T COG4598 99 FQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDE 178 (256)
T ss_pred hhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecC
Confidence 0 00 00 00012223333 34444444578999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhcCCCCCCCceeEEEEEEee
Q 043119 632 FGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLR 691 (792)
Q Consensus 632 ~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~~~~~~~~~v~~~~~~~~~ 691 (792)
|++.+||.-.-.+. .++..|++. +.|.+++||.+..+..- ..+|-|+|-..++
T Consensus 179 PTSALDPElVgEVL-kv~~~LAeE--grTMv~VTHEM~FAR~V----ss~v~fLh~G~iE 231 (256)
T COG4598 179 PTSALDPELVGEVL-KVMQDLAEE--GRTMVVVTHEMGFARDV----SSHVIFLHQGKIE 231 (256)
T ss_pred CcccCCHHHHHHHH-HHHHHHHHh--CCeEEEEeeehhHHHhh----hhheEEeecceec
Confidence 99999998655553 588899986 56899999999988642 2456667666554
No 300
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.24 E-value=2.1e-11 Score=144.46 Aligned_cols=140 Identities=15% Similarity=0.161 Sum_probs=88.0
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH-------h---hcCccccCCcee
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL-------S---HIGSFVPADAAT 591 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l-------a---q~g~~vpa~~~~ 591 (792)
.+.+++....+ .+..+.++++|+.. |.+++|+||||||||||||++++.... + .+| |+|.....
T Consensus 319 ~l~~~~l~~~~----~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~-y~~q~~~~ 393 (635)
T PRK11147 319 VFEMENVNYQI----DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVA-YFDQHRAE 393 (635)
T ss_pred eEEEeeeEEEE----CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEE-EEeCcccc
Confidence 34555444332 23467889999988 999999999999999999999876321 1 112 34432110
Q ss_pred e----eccc-----------c-----------------cchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCH
Q 043119 592 V----GLTD-----------S-----------------KHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLT 638 (792)
Q Consensus 592 ~----~~~~-----------~-----------------~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~ 638 (792)
+ .+.+ . +......++++.++ ++++.+...+.++.++|||||++|.|+
T Consensus 394 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~ 473 (635)
T PRK11147 394 LDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDV 473 (635)
T ss_pred cCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 0 0100 0 00011123444444 445555555789999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 639 EDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 639 ~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
.....+.. ++. +. +.++|++||+.+.+..
T Consensus 474 ~~~~~l~~-~l~---~~--~~tvi~vSHd~~~~~~ 502 (635)
T PRK11147 474 ETLELLEE-LLD---SY--QGTVLLVSHDRQFVDN 502 (635)
T ss_pred HHHHHHHH-HHH---hC--CCeEEEEECCHHHHHH
Confidence 87665532 333 32 3489999999988753
No 301
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.24 E-value=2e-11 Score=142.48 Aligned_cols=140 Identities=18% Similarity=0.150 Sum_probs=90.9
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH-------h---hcCccccCCc-e
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL-------S---HIGSFVPADA-A 590 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l-------a---q~g~~vpa~~-~ 590 (792)
.+.+++....+ .+..+.++++|+.. |++++|+||||||||||+|+++++... . .+ .|+|... .
T Consensus 324 ~l~~~~l~~~~----~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i-~~v~q~~~~ 398 (556)
T PRK11819 324 VIEAENLSKSF----GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKL-AYVDQSRDA 398 (556)
T ss_pred EEEEEeEEEEE----CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEE-EEEeCchhh
Confidence 35555544333 23467889999988 999999999999999999999876421 1 11 2455442 1
Q ss_pred e---eeccc---------------------------c-cchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCH
Q 043119 591 T---VGLTD---------------------------S-KHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLT 638 (792)
Q Consensus 591 ~---~~~~~---------------------------~-~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~ 638 (792)
. ..+.+ . .......++++.++ ++++.+...+.+|.++|||||++|.|+
T Consensus 399 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~ 478 (556)
T PRK11819 399 LDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDV 478 (556)
T ss_pred cCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 0 00000 0 00111234555544 445555556799999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 639 EDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 639 ~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
.....+. .++..+ . + ++|++||+.+.+..
T Consensus 479 ~~~~~l~-~~l~~~---~-~-tvi~vtHd~~~~~~ 507 (556)
T PRK11819 479 ETLRALE-EALLEF---P-G-CAVVISHDRWFLDR 507 (556)
T ss_pred HHHHHHH-HHHHhC---C-C-eEEEEECCHHHHHH
Confidence 8887774 344443 1 3 68999999998753
No 302
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.24 E-value=2.6e-11 Score=124.19 Aligned_cols=128 Identities=20% Similarity=0.169 Sum_probs=84.2
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH-------------------------------hhcCccccCC
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL-------------------------------SHIGSFVPAD 588 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l-------------------------------aq~g~~vpa~ 588 (792)
.=.+|++|+.+ |++.+|.|-.|||||||+|.+-.+.-. .|--...|-.
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr 121 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR 121 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence 34678999988 999999999999999999988544311 1111111211
Q ss_pred c----ee-----------------------eeccc-ccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHH
Q 043119 589 A----AT-----------------------VGLTD-SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTED 640 (792)
Q Consensus 589 ~----~~-----------------------~~~~~-~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~ 640 (792)
. .. +++-+ .+.....+|..|.+-.-+++++ +++++++||||+|+.+||.-
T Consensus 122 tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAl--a~~~~IlLMDEaFSALDPLI 199 (386)
T COG4175 122 TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARAL--ANDPDILLMDEAFSALDPLI 199 (386)
T ss_pred hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHH--ccCCCEEEecCchhhcChHH
Confidence 0 00 11111 1112223444443333344444 89999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 641 GIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 641 ~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+..+-..+++.-.+. +.|++|+|||++.+-
T Consensus 200 R~~mQdeLl~Lq~~l--~KTIvFitHDLdEAl 229 (386)
T COG4175 200 RTEMQDELLELQAKL--KKTIVFITHDLDEAL 229 (386)
T ss_pred HHHHHHHHHHHHHHh--CCeEEEEecCHHHHH
Confidence 999877776654443 579999999998763
No 303
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.23 E-value=2.8e-11 Score=124.14 Aligned_cols=128 Identities=22% Similarity=0.234 Sum_probs=85.7
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh------------------------hcCccccCCc------
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS------------------------HIGSFVPADA------ 589 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la------------------------q~g~~vpa~~------ 589 (792)
...+|++|+.+ |++++|+|+.|||||||+|++-++.-.. ++|+ ++...
T Consensus 20 ~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGM-IFQhFnLLssr 98 (339)
T COG1135 20 TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGM-IFQHFNLLSSR 98 (339)
T ss_pred eeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccE-Eeccccccccc
Confidence 35678999999 9999999999999999999986553211 1221 11000
Q ss_pred ------------ee----------------eeccc-ccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHH
Q 043119 590 ------------AT----------------VGLTD-SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTED 640 (792)
Q Consensus 590 ------------~~----------------~~~~~-~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~ 640 (792)
+. +++-| .+.....+|.... ++.+.+-+.|++|.++|.||+++.+||..
T Consensus 99 TV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQK--QRVaIARALa~~P~iLL~DEaTSALDP~T 176 (339)
T COG1135 99 TVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQK--QRVAIARALANNPKILLCDEATSALDPET 176 (339)
T ss_pred hHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchh--hHHHHHHHHhcCCCEEEecCccccCChHH
Confidence 00 11111 1112223343222 33333344489999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 641 GIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 641 ~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
..+|. .++..+.++ .+-|++++||.++....
T Consensus 177 T~sIL-~LL~~In~~-lglTIvlITHEm~Vvk~ 207 (339)
T COG1135 177 TQSIL-ELLKDINRE-LGLTIVLITHEMEVVKR 207 (339)
T ss_pred HHHHH-HHHHHHHHH-cCCEEEEEechHHHHHH
Confidence 99885 477777654 37899999999999874
No 304
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=3.3e-11 Score=142.46 Aligned_cols=128 Identities=16% Similarity=0.180 Sum_probs=82.5
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC----------ccccCCc-----eeeecc-------
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIG----------SFVPADA-----ATVGLT------- 595 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g----------~~vpa~~-----~~~~~~------- 595 (792)
+..+.++++|+.. |.+++|+||||||||||||++++....- -| .|+|... ..++.+
T Consensus 13 ~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd-~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~ 91 (638)
T PRK10636 13 VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD-GGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREY 91 (638)
T ss_pred CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHH
Confidence 3457789999988 9999999999999999999998753211 11 1122110 000000
Q ss_pred --------------------------------c--------------c-cchhhccchhHHHHHH-HHHHHHhCCCCeEE
Q 043119 596 --------------------------------D--------------S-KHMTAEQSSFMIDLHQ-VGMMLRQATSQSLC 627 (792)
Q Consensus 596 --------------------------------~--------------~-~~~~~~~s~f~~e~~~-~~~~l~~~~~~slv 627 (792)
+ . .......++|+.++++ ++.+...+.+|+++
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lL 171 (638)
T PRK10636 92 RQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLL 171 (638)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEE
Confidence 0 0 0011123456655544 44444557899999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 628 LLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 628 llDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
|||||++|+|+.....+ .++|.+. +.++|++||+.+.+..
T Consensus 172 LLDEPtn~LD~~~~~~L----~~~L~~~--~~tviivsHd~~~l~~ 211 (638)
T PRK10636 172 LLDEPTNHLDLDAVIWL----EKWLKSY--QGTLILISHDRDFLDP 211 (638)
T ss_pred EEcCCCCcCCHHHHHHH----HHHHHhC--CCeEEEEeCCHHHHHH
Confidence 99999999999776654 3344443 3589999999998763
No 305
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.23 E-value=6e-11 Score=122.11 Aligned_cols=65 Identities=20% Similarity=0.203 Sum_probs=46.2
Q ss_pred chhHHHHHH-HHHHHHhCCCC--eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 605 SSFMIDLHQ-VGMMLRQATSQ--SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 605 s~f~~e~~~-~~~~l~~~~~~--slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
++++.++++ ++.+...+.+| +++|+|||++|+|+.....+.. ++..+.+. +.++|++||+++.+.
T Consensus 136 ~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~-~l~~~~~~--g~tii~itH~~~~~~ 203 (226)
T cd03270 136 PTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIE-TLKRLRDL--GNTVLVVEHDEDTIR 203 (226)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHhC--CCEEEEEEeCHHHHH
Confidence 344444443 44334445555 6999999999999998888854 56666654 678999999998764
No 306
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.23 E-value=2.9e-11 Score=139.66 Aligned_cols=130 Identities=13% Similarity=0.008 Sum_probs=86.6
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH-------H-hh-------------cCccccCCce---e----
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF-------L-SH-------------IGSFVPADAA---T---- 591 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~-------l-aq-------------~g~~vpa~~~---~---- 591 (792)
.+..+++|+.. |++++|+||||||||||||.+++..- + ++ .-.|+|.... .
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 346 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH 346 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence 36778999988 99999999999999999999976531 0 00 0013343310 0
Q ss_pred -------eec----------cc---c---------------cchhhccchhHHHHH-HHHHHHHhCCCCeEEEEeCCCCC
Q 043119 592 -------VGL----------TD---S---------------KHMTAEQSSFMIDLH-QVGMMLRQATSQSLCLLDEFGKG 635 (792)
Q Consensus 592 -------~~~----------~~---~---------------~~~~~~~s~f~~e~~-~~~~~l~~~~~~slvllDE~~~g 635 (792)
++. .+ . ........+++.+++ ++..+...+.+|.|+|||||++|
T Consensus 347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~ 426 (501)
T PRK11288 347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRG 426 (501)
T ss_pred CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCC
Confidence 000 00 0 000111234554444 44445555789999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 636 TLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 636 t~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
.|+.....+. .++..+.+. +.++|++||+.+.+..
T Consensus 427 LD~~~~~~l~-~~l~~l~~~--g~tviivsHd~~~~~~ 461 (501)
T PRK11288 427 IDVGAKHEIY-NVIYELAAQ--GVAVLFVSSDLPEVLG 461 (501)
T ss_pred CCHhHHHHHH-HHHHHHHhC--CCEEEEECCCHHHHHh
Confidence 9999888885 577777765 5789999999998753
No 307
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.22 E-value=4.6e-11 Score=132.38 Aligned_cols=130 Identities=18% Similarity=0.193 Sum_probs=88.3
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh-----cCccc-----------------------cC--
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH-----IGSFV-----------------------PA-- 587 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq-----~g~~v-----------------------pa-- 587 (792)
.....++++|+.. |++++|.|.||+|||||+|.++++.-... -|-++ |.
T Consensus 20 gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~Ls 99 (500)
T COG1129 20 GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLS 99 (500)
T ss_pred CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCcc
Confidence 4567789999988 99999999999999999999987652110 01111 10
Q ss_pred ---------Ccee-eeccccc-----------------chhhccchhHHHHHHHHHHHHhC-CCCeEEEEeCCCCCCCHH
Q 043119 588 ---------DAAT-VGLTDSK-----------------HMTAEQSSFMIDLHQVGMMLRQA-TSQSLCLLDEFGKGTLTE 639 (792)
Q Consensus 588 ---------~~~~-~~~~~~~-----------------~~~~~~s~f~~e~~~~~~~l~~~-~~~slvllDE~~~gt~~~ 639 (792)
+... .+++|.+ .......+++...+|+..|.+.. .+..++||||||+.++..
T Consensus 100 VaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~ 179 (500)
T COG1129 100 VAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVK 179 (500)
T ss_pred HHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 0001 3344400 01222344444445555554443 466799999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEccChhhh
Q 043119 640 DGIGLLGGTINYFVTCDVPPKVLVCTHLTELL 671 (792)
Q Consensus 640 ~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~ 671 (792)
+...+. .+++.|.++ |..+||+||.++.+
T Consensus 180 E~~~Lf-~~ir~Lk~~--Gv~ii~ISHrl~Ei 208 (500)
T COG1129 180 ETERLF-DLIRRLKAQ--GVAIIYISHRLDEV 208 (500)
T ss_pred HHHHHH-HHHHHHHhC--CCEEEEEcCcHHHH
Confidence 999996 588899876 67999999998664
No 308
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.22 E-value=4.3e-11 Score=125.19 Aligned_cols=60 Identities=18% Similarity=0.174 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 610 DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 610 e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+.++++.+...+.+++++|+|||++|.|+.....+. .+++.+.+. ++++|++||+++.+.
T Consensus 144 ~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~-~~l~~l~~~--~~tIIiiSHd~~~~~ 203 (255)
T cd03236 144 ELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAA-RLIRELAED--DNYVLVVEHDLAVLD 203 (255)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhc--CCEEEEEECCHHHHH
Confidence 334455555557899999999999999998888885 567777654 578999999998875
No 309
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.21 E-value=3.4e-11 Score=139.98 Aligned_cols=131 Identities=14% Similarity=0.093 Sum_probs=87.8
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH-----------------------hhcCccccCCce--e--
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL-----------------------SHIGSFVPADAA--T-- 591 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l-----------------------aq~g~~vpa~~~--~-- 591 (792)
..+.++++|+.. |++++|+||||||||||+|+++++..- ..+ .|||.... -
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i-~~v~q~~~~~l~~ 377 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRI-QVVFQDPNSSLNP 377 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhce-EEEEeCchhhcCC
Confidence 457789999998 999999999999999999999876410 011 23333310 0
Q ss_pred -eec--------------cc-----------------c-cchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCC
Q 043119 592 -VGL--------------TD-----------------S-KHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTL 637 (792)
Q Consensus 592 -~~~--------------~~-----------------~-~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~ 637 (792)
..+ .+ . .......++++.++ ++++.+...+.+|+++|||||++|.|
T Consensus 378 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 457 (529)
T PRK15134 378 RLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457 (529)
T ss_pred cccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccC
Confidence 000 00 0 00011123444444 44555555678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 638 TEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 638 ~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
+.....+. .++..+.+.. +.++|++||+.+.+..
T Consensus 458 ~~~~~~l~-~~l~~~~~~~-~~tvi~vsHd~~~~~~ 491 (529)
T PRK15134 458 KTVQAQIL-ALLKSLQQKH-QLAYLFISHDLHVVRA 491 (529)
T ss_pred HHHHHHHH-HHHHHHHHhh-CCEEEEEeCCHHHHHH
Confidence 99888885 5666776532 5789999999988753
No 310
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.21 E-value=4e-11 Score=140.05 Aligned_cols=127 Identities=19% Similarity=0.163 Sum_probs=83.5
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh----------hcCccccCCceee---eccc----c-c--
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS----------HIGSFVPADAATV---GLTD----S-K-- 598 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la----------q~g~~vpa~~~~~---~~~~----~-~-- 598 (792)
..+.++++|+.. |++++|+||||||||||||++++..... .+| |||...... .+.+ . .
T Consensus 20 ~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~-~v~Q~~~~~~~~tv~e~l~~~~~~~ 98 (556)
T PRK11819 20 KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVG-YLPQEPQLDPEKTVRENVEEGVAEV 98 (556)
T ss_pred CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEE-EEecCCCCCCCCcHHHHHHHhhHHH
Confidence 456779999988 9999999999999999999998764221 122 344332100 0000 0 0
Q ss_pred ---------------------------------------------------------chhhccchhHHHH-HHHHHHHHh
Q 043119 599 ---------------------------------------------------------HMTAEQSSFMIDL-HQVGMMLRQ 620 (792)
Q Consensus 599 ---------------------------------------------------------~~~~~~s~f~~e~-~~~~~~l~~ 620 (792)
......+.++.++ ++++.+...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~al 178 (556)
T PRK11819 99 KAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLL 178 (556)
T ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHHH
Confidence 0011123455555 445555556
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 621 ATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 621 ~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
+.+|+++|||||++|.|+.....+. .++..+ +.++|++||+.+.+..
T Consensus 179 ~~~p~vlLLDEPt~~LD~~~~~~l~-~~L~~~-----~~tviiisHd~~~~~~ 225 (556)
T PRK11819 179 LEKPDMLLLDEPTNHLDAESVAWLE-QFLHDY-----PGTVVAVTHDRYFLDN 225 (556)
T ss_pred hCCCCEEEEcCCCCcCChHHHHHHH-HHHHhC-----CCeEEEEeCCHHHHHh
Confidence 7899999999999999998777663 344432 2489999999998763
No 311
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.21 E-value=1.9e-10 Score=113.51 Aligned_cols=117 Identities=19% Similarity=0.200 Sum_probs=76.9
Q ss_pred cEEEEEcCCCCCchhHHHHHHHHHHHh-------------hcCccccCCceeeeccc--------ccchhhccchhHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVALIVFLS-------------HIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDL 611 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~~~~la-------------q~g~~vpa~~~~~~~~~--------~~~~~~~~s~f~~e~ 611 (792)
.+.+|+||||+|||++|.+|+...... .-+.-.++..+.+.+.- ......-.|..+...
T Consensus 23 ~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~LS~Ge~~r 102 (178)
T cd03239 23 SFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQGKVEQILSGGEKSL 102 (178)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecCCcCcccCCHHHHHH
Confidence 399999999999999999987654211 11112233333332211 111222256555555
Q ss_pred HHHHHHHHh--CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 612 HQVGMMLRQ--ATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 612 ~~~~~~l~~--~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..++.++.. ..+++++|+|||++|.|+.....+.. .+..+.+. ++++|++||++++..
T Consensus 103 ~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~-~L~~~~~~--g~tiIiiSH~~~~~~ 162 (178)
T cd03239 103 SALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSD-MIKEMAKH--TSQFIVITLKKEMFE 162 (178)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhC--CCEEEEEECCHHHHh
Confidence 555555543 36899999999999999998887764 55566553 578999999998764
No 312
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=4.4e-11 Score=139.10 Aligned_cols=126 Identities=16% Similarity=0.097 Sum_probs=81.9
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh----------hcCccccCCceee---ecc----------
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS----------HIGSFVPADAATV---GLT---------- 595 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la----------q~g~~vpa~~~~~---~~~---------- 595 (792)
..+.++++|+.. |++++|+||||||||||||.+++..-.. .+| |+|...... ++.
T Consensus 14 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~-~~~q~~~~~~~~tv~e~l~~~~~~~ 92 (530)
T PRK15064 14 KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLG-KLRQDQFAFEEFTVLDTVIMGHTEL 92 (530)
T ss_pred cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEE-EEeccCCcCCCCcHHHHHHHhhHHH
Confidence 346679999988 9999999999999999999998764211 122 333221000 000
Q ss_pred -------------------------------------c--------------ccch-hhccchhHHHHHH-HHHHHHhCC
Q 043119 596 -------------------------------------D--------------SKHM-TAEQSSFMIDLHQ-VGMMLRQAT 622 (792)
Q Consensus 596 -------------------------------------~--------------~~~~-~~~~s~f~~e~~~-~~~~l~~~~ 622 (792)
+ .... ....++++.++++ ++.+...+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~ 172 (530)
T PRK15064 93 WEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFS 172 (530)
T ss_pred HHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhc
Confidence 0 0000 0112445555544 444444578
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 623 SQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 623 ~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+|+++|||||++|.|+.....+.. ++ .+. +.++|++||+.+.+.
T Consensus 173 ~p~lLlLDEPt~~LD~~~~~~l~~-~l---~~~--~~tiiivsHd~~~~~ 216 (530)
T PRK15064 173 NPDILLLDEPTNNLDINTIRWLED-VL---NER--NSTMIIISHDRHFLN 216 (530)
T ss_pred CCCEEEEcCCCcccCHHHHHHHHH-HH---HhC--CCeEEEEeCCHHHHH
Confidence 999999999999999988776643 33 333 578999999999875
No 313
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.21 E-value=4.7e-11 Score=138.61 Aligned_cols=148 Identities=11% Similarity=0.091 Sum_probs=93.5
Q ss_pred cEEEecccceeee-cccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH---------h------------
Q 043119 523 LLDIQNGRHVLQE-MTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL---------S------------ 579 (792)
Q Consensus 523 ~l~i~~~~hp~~~-~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l---------a------------ 579 (792)
.+.+++....+-. ...+..+.++++|+.. |++++|+||||||||||+|+++++.-. +
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 4666665543310 0012357789999988 999999999999999999999866411 0
Q ss_pred -------hcCccccCCceee---ecc-----------c-----------------cc-----chhhccchhHHHH-HHHH
Q 043119 580 -------HIGSFVPADAATV---GLT-----------D-----------------SK-----HMTAEQSSFMIDL-HQVG 615 (792)
Q Consensus 580 -------q~g~~vpa~~~~~---~~~-----------~-----------------~~-----~~~~~~s~f~~e~-~~~~ 615 (792)
.+ .|||.....+ .+. + .. ........++.++ ++++
T Consensus 359 ~~~~~~~~i-~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~ 437 (520)
T TIGR03269 359 GRGRAKRYI-GILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVA 437 (520)
T ss_pred hHHHHhhhE-EEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHH
Confidence 01 1333321100 000 0 00 0011122344444 4455
Q ss_pred HHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 616 MMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 616 ~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
.+...+.+|+++|+|||++|.|+.....+. .++..+.+. .+.++|++||+.+.+..
T Consensus 438 laral~~~p~lLllDEPt~~LD~~~~~~l~-~~l~~l~~~-~g~tvi~vsHd~~~~~~ 493 (520)
T TIGR03269 438 LAQVLIKEPRIVILDEPTGTMDPITKVDVT-HSILKAREE-MEQTFIIVSHDMDFVLD 493 (520)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHH-cCcEEEEEeCCHHHHHH
Confidence 555567899999999999999998888885 566666543 25789999999988753
No 314
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.21 E-value=4.5e-11 Score=138.07 Aligned_cols=128 Identities=15% Similarity=0.109 Sum_probs=86.4
Q ss_pred eccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH----------------------hhcCccccCCce------ee
Q 043119 542 IPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL----------------------SHIGSFVPADAA------TV 592 (792)
Q Consensus 542 v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l----------------------aq~g~~vpa~~~------~~ 592 (792)
+.++++|+.. |++++|+||||||||||||.++++.-. .++ .|||.... ..
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i-~~v~q~~~~~~~~~~~ 345 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI-VYISEDRKRDGLVLGM 345 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCC-EEecCccccCCCcCCC
Confidence 5678999988 999999999999999999999865311 012 24454420 00
Q ss_pred ec------------------cc-----------------c-cchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCC
Q 043119 593 GL------------------TD-----------------S-KHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKG 635 (792)
Q Consensus 593 ~~------------------~~-----------------~-~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~g 635 (792)
.+ .+ . ........+++.++ ++++.+...+.+|+++|||||++|
T Consensus 346 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~ 425 (501)
T PRK10762 346 SVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRG 425 (501)
T ss_pred cHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence 00 00 0 00011122444444 445555555789999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 636 TLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 636 t~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
.|+.....+. .+++.+.+. +.++|++||+++.+..
T Consensus 426 LD~~~~~~l~-~~l~~~~~~--g~tviivtHd~~~~~~ 460 (501)
T PRK10762 426 VDVGAKKEIY-QLINQFKAE--GLSIILVSSEMPEVLG 460 (501)
T ss_pred CCHhHHHHHH-HHHHHHHHC--CCEEEEEcCCHHHHHh
Confidence 9999888885 577777654 6799999999988753
No 315
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=5.7e-10 Score=124.19 Aligned_cols=182 Identities=17% Similarity=0.143 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCC-C-CCceecCCCcEEEecccceeeecccCceeccceeecCC-CcEEEEEcCC
Q 043119 485 SDHLLKAVNFAAELDCFLSLALVAHQNN-Y-MRPILTLEPLLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPN 561 (792)
Q Consensus 485 ~~~l~~~~~~i~~lD~~~s~a~~a~~~~-~-~~P~~~~~~~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN 561 (792)
...+.....-.|-.|.+.+|-.--.... . .+++...++.+++. ..|--+....++.+++|++++.. |+.++|+||+
T Consensus 278 Gs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~-~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~S 356 (559)
T COG4988 278 GSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEIS-LENLSFRYPDGKPALSDLNLTIKAGQLTALVGAS 356 (559)
T ss_pred HHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceee-ecceEEecCCCCcccCCceeEecCCcEEEEECCC
Confidence 3334444444666777666654322211 1 11233333344444 11222211223489999999998 9999999999
Q ss_pred CCCchhHHHHHHHHHHH---------------------hhcCccccCCcee----------eecc---------------
Q 043119 562 YSGKSIYIKQVALIVFL---------------------SHIGSFVPADAAT----------VGLT--------------- 595 (792)
Q Consensus 562 ~~GKSt~lk~i~~~~~l---------------------aq~g~~vpa~~~~----------~~~~--------------- 595 (792)
||||||++..+++..-- -|+ ++||....- ++-.
T Consensus 357 GaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i-~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~ 435 (559)
T COG4988 357 GAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQI-SWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAG 435 (559)
T ss_pred CCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHe-eeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhc
Confidence 99999999998765421 011 122222110 0000
Q ss_pred --c--cc------chhhccchh-HHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEE
Q 043119 596 --D--SK------HMTAEQSSF-MIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVC 664 (792)
Q Consensus 596 --~--~~------~~~~~~s~f-~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~ 664 (792)
+ .. .+.++-+.. .++.+|++-+-....+++++|+|||+++.|.+.-.-+. ..+..+.+ +.|+|++
T Consensus 436 l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~-~~l~~l~~---~ktvl~i 511 (559)
T COG4988 436 LLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIIL-QALQELAK---QKTVLVI 511 (559)
T ss_pred HHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHH-HHHHHHHh---CCeEEEE
Confidence 0 00 011111112 24566766666668999999999999999997666664 45566665 3699999
Q ss_pred ccChhhhh
Q 043119 665 THLTELLN 672 (792)
Q Consensus 665 TH~~~l~~ 672 (792)
||.++.+.
T Consensus 512 tHrl~~~~ 519 (559)
T COG4988 512 THRLEDAA 519 (559)
T ss_pred EcChHHHh
Confidence 99988765
No 316
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.21 E-value=2.1e-11 Score=116.48 Aligned_cols=139 Identities=19% Similarity=0.248 Sum_probs=90.0
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH---------------------HhhcCc----cccCCceeee
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF---------------------LSHIGS----FVPADAATVG 593 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~---------------------laq~g~----~vpa~~~~~~ 593 (792)
-.-.|+++|..+ |+.-+|+||||+||||+|-.|.+-+- .|++|. --|.-...++
T Consensus 18 F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~lt 97 (249)
T COG4674 18 FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLT 97 (249)
T ss_pred eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhcc
Confidence 345689999988 99999999999999999998864331 233331 0111111111
Q ss_pred ccc----------------------------------------ccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeCCC
Q 043119 594 LTD----------------------------------------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFG 633 (792)
Q Consensus 594 ~~~----------------------------------------~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~~ 633 (792)
+.+ .+.....+|....+..++...+ +.+|.|+++|||.
T Consensus 98 V~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll--~Q~P~lLLlDEPv 175 (249)
T COG4674 98 VRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLL--AQDPKLLLLDEPV 175 (249)
T ss_pred HHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheee--ccCCcEEEecCcc
Confidence 111 0011112333333333444333 6899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhcCCCCCCCceeEEEEE
Q 043119 634 KGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMS 688 (792)
Q Consensus 634 ~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~~~~~~~~~v~~~~~~ 688 (792)
+|..-.+-...+ .++..++. ++.++++.||++....- ...|..+|-.
T Consensus 176 AGMTd~Et~~ta-eLl~~la~---~hsilVVEHDM~Fvr~~----A~~VTVlh~G 222 (249)
T COG4674 176 AGMTDAETEKTA-ELLKSLAG---KHSILVVEHDMGFVREI----ADKVTVLHEG 222 (249)
T ss_pred CCCcHHHHHHHH-HHHHHHhc---CceEEEEeccHHHHHHh----hheeEEEecc
Confidence 999988888885 47788876 46899999999998642 2356666664
No 317
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.20 E-value=3.4e-11 Score=142.15 Aligned_cols=130 Identities=14% Similarity=0.056 Sum_probs=88.0
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH------------------------hhcCccccCCce-ee--
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL------------------------SHIGSFVPADAA-TV-- 592 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l------------------------aq~g~~vpa~~~-~~-- 592 (792)
.+.++++|+.. |++++|+||||||||||+|+|+++.-. .++ .|||.... .+
T Consensus 338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i-~~v~Q~~~~~l~~ 416 (623)
T PRK10261 338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDI-QFIFQDPYASLDP 416 (623)
T ss_pred EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCe-EEEecCchhhcCC
Confidence 47789999988 999999999999999999999866411 012 24444321 00
Q ss_pred --ecc-------------c-----------------c-cchhhccchhHHHHH-HHHHHHHhCCCCeEEEEeCCCCCCCH
Q 043119 593 --GLT-------------D-----------------S-KHMTAEQSSFMIDLH-QVGMMLRQATSQSLCLLDEFGKGTLT 638 (792)
Q Consensus 593 --~~~-------------~-----------------~-~~~~~~~s~f~~e~~-~~~~~l~~~~~~slvllDE~~~gt~~ 638 (792)
.+. . . .......+.++.+++ +++.+...+.+|.++|+|||++|.|+
T Consensus 417 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~ 496 (623)
T PRK10261 417 RQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDV 496 (623)
T ss_pred CCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 000 0 0 000111234455554 44555555789999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 639 EDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 639 ~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
.....+. .++..+.+. .+.++|++||+++.+..
T Consensus 497 ~~~~~i~-~ll~~l~~~-~g~tvi~isHdl~~v~~ 529 (623)
T PRK10261 497 SIRGQII-NLLLDLQRD-FGIAYLFISHDMAVVER 529 (623)
T ss_pred HHHHHHH-HHHHHHHHh-cCCEEEEEeCCHHHHHH
Confidence 9888885 567677653 25799999999998753
No 318
>PLN03211 ABC transporter G-25; Provisional
Probab=99.19 E-value=4.2e-11 Score=141.35 Aligned_cols=127 Identities=20% Similarity=0.176 Sum_probs=86.5
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh------------------hcCccccCCceeee---ccc-
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS------------------HIGSFVPADAATVG---LTD- 596 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la------------------q~g~~vpa~~~~~~---~~~- 596 (792)
+.+.+|+++... |++++|+||||||||||||.+++..-.. +.-.|||.+....+ +.+
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 160 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRET 160 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHH
Confidence 456789999888 9999999999999999999998764211 01124544322111 000
Q ss_pred ---------c------c------------chh---------hccchhH-HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHH
Q 043119 597 ---------S------K------------HMT---------AEQSSFM-IDLHQVGMMLRQATSQSLCLLDEFGKGTLTE 639 (792)
Q Consensus 597 ---------~------~------------~~~---------~~~s~f~-~e~~~~~~~l~~~~~~slvllDE~~~gt~~~ 639 (792)
. + .+. .....++ +|.++++.+...+.+|+++++|||++|.|+.
T Consensus 161 l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~ 240 (659)
T PLN03211 161 LVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDAT 240 (659)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHH
Confidence 0 0 000 0012233 3456666666778999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEccChh
Q 043119 640 DGIGLLGGTINYFVTCDVPPKVLVCTHLTE 669 (792)
Q Consensus 640 ~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~ 669 (792)
....+. .+++.+.+. +.++|++||+++
T Consensus 241 ~~~~l~-~~L~~l~~~--g~TvI~~sH~~~ 267 (659)
T PLN03211 241 AAYRLV-LTLGSLAQK--GKTIVTSMHQPS 267 (659)
T ss_pred HHHHHH-HHHHHHHhC--CCEEEEEecCCC
Confidence 888885 567777764 679999999986
No 319
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.18 E-value=6.8e-11 Score=140.06 Aligned_cols=128 Identities=17% Similarity=0.175 Sum_probs=81.5
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--hc---C----ccccCCce--eee-cc-----------
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--HI---G----SFVPADAA--TVG-LT----------- 595 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--q~---g----~~vpa~~~--~~~-~~----------- 595 (792)
..+.+|++|+.. |++++|+||||||||||||++++..... .+ | .++|.... ..+ ++
T Consensus 16 ~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~ 95 (635)
T PRK11147 16 APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQA 95 (635)
T ss_pred ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHH
Confidence 457789999988 9999999999999999999998764211 00 1 01111100 000 00
Q ss_pred -----------------------------------c-----cc----------chhhccchhHHHH-HHHHHHHHhCCCC
Q 043119 596 -----------------------------------D-----SK----------HMTAEQSSFMIDL-HQVGMMLRQATSQ 624 (792)
Q Consensus 596 -----------------------------------~-----~~----------~~~~~~s~f~~e~-~~~~~~l~~~~~~ 624 (792)
+ .+ ......++++.++ ++++.+...+.+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGekqRv~LAraL~~~P 175 (635)
T PRK11147 96 EYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNP 175 (635)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHHHHHHHHHHHhcCC
Confidence 0 00 0011234555555 4455555557899
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 625 SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 625 slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
+++|||||++|.|+.....+. +.|.+. +.++|++||+.+.+..
T Consensus 176 ~lLLLDEPt~~LD~~~~~~L~----~~L~~~--~~tvlivsHd~~~l~~ 218 (635)
T PRK11147 176 DVLLLDEPTNHLDIETIEWLE----GFLKTF--QGSIIFISHDRSFIRN 218 (635)
T ss_pred CEEEEcCCCCccCHHHHHHHH----HHHHhC--CCEEEEEeCCHHHHHH
Confidence 999999999999998776553 333333 2489999999998753
No 320
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.18 E-value=1.5e-10 Score=112.40 Aligned_cols=132 Identities=20% Similarity=0.140 Sum_probs=87.4
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHH--------------------HHhhcCccccCCce-------
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIV--------------------FLSHIGSFVPADAA------- 590 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~--------------------~laq~g~~vpa~~~------- 590 (792)
.+-+.++++++.. |++.+|+||||+||||+||.+++-. -||..-.-.|....
T Consensus 13 Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv 92 (259)
T COG4559 13 GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTV 92 (259)
T ss_pred cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEH
Confidence 4567789999988 9999999999999999999886321 11211111111110
Q ss_pred ----eeeccc----------ccc----------------hhhccchhHHHHHHHHHHHHhCC----CCeEEEEeCCCCCC
Q 043119 591 ----TVGLTD----------SKH----------------MTAEQSSFMIDLHQVGMMLRQAT----SQSLCLLDEFGKGT 636 (792)
Q Consensus 591 ----~~~~~~----------~~~----------------~~~~~s~f~~e~~~~~~~l~~~~----~~slvllDE~~~gt 636 (792)
.+|... .+. .-..+|.....-.++++.|.+.. .+..++||||++..
T Consensus 93 ~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaL 172 (259)
T COG4559 93 QEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSAL 172 (259)
T ss_pred HHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCcccc
Confidence 011111 000 00123443444456778887754 33599999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 637 LTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 637 ~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
|..-...+. .+.+.|+.. +..|+.+-||+.++..
T Consensus 173 Di~HQ~~tl-~laR~la~~--g~~V~~VLHDLNLAA~ 206 (259)
T COG4559 173 DIAHQHHTL-RLARQLARE--GGAVLAVLHDLNLAAQ 206 (259)
T ss_pred chHHHHHHH-HHHHHHHhc--CCcEEEEEccchHHHH
Confidence 999988886 477788875 5789999999999864
No 321
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.17 E-value=1.4e-10 Score=117.22 Aligned_cols=53 Identities=21% Similarity=0.096 Sum_probs=41.6
Q ss_pred HHhCCCCeEEEEeCCCCCCCHHHHH-HHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 618 LRQATSQSLCLLDEFGKGTLTEDGI-GLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 618 l~~~~~~slvllDE~~~gt~~~~~~-~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
...+.+++++|+|||++|+|+.... .+. .++..+.+.. +.++|++||++++..
T Consensus 134 ~al~~~p~illlDEP~~~LD~~~~~~~l~-~~l~~~~~~~-~~~iiiitH~~~~~~ 187 (204)
T cd03240 134 ETFGSNCGILALDEPTTNLDEENIEESLA-EIIEERKSQK-NFQLIVITHDEELVD 187 (204)
T ss_pred HHhccCCCEEEEcCCccccCHHHHHHHHH-HHHHHHHhcc-CCEEEEEEecHHHHh
Confidence 3446899999999999999998887 774 5666665532 468999999998764
No 322
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.17 E-value=4.2e-10 Score=132.20 Aligned_cols=150 Identities=17% Similarity=0.178 Sum_probs=95.3
Q ss_pred CCceecCCCcEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHH----------------
Q 043119 514 MRPILTLEPLLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIV---------------- 576 (792)
Q Consensus 514 ~~P~~~~~~~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~---------------- 576 (792)
..|.+. +.+.+++..--+-. .+..+.+|++++.+ |+.++|+|+|||||||++|.+.++-
T Consensus 464 ~~~~~~--g~I~~~nvsf~y~~--~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~ 539 (709)
T COG2274 464 HLPKLQ--GEIEFENVSFRYGP--DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLND 539 (709)
T ss_pred cccccC--ceEEEEEEEEEeCC--CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHh
Confidence 444443 34777776544421 23478999999999 9999999999999999999886543
Q ss_pred -----HHhhcCccccCCceee--------eccc---c-------------------------cchhhccchhHHHH-HHH
Q 043119 577 -----FLSHIGSFVPADAATV--------GLTD---S-------------------------KHMTAEQSSFMIDL-HQV 614 (792)
Q Consensus 577 -----~laq~g~~vpa~~~~~--------~~~~---~-------------------------~~~~~~~s~f~~e~-~~~ 614 (792)
+--|+| +||.+..-+ ...+ + ..+.++-+.++++. +++
T Consensus 540 i~~~~lR~~ig-~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrl 618 (709)
T COG2274 540 IDLASLRRQVG-YVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRL 618 (709)
T ss_pred cCHHHHHhhee-EEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHH
Confidence 122333 566554210 0000 0 01112223344444 344
Q ss_pred HHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 615 GMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 615 ~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+.+.....+|+++||||++++.|+..-..+...+ ..+.. ++|+|++||.+....
T Consensus 619 alARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L-~~~~~---~~T~I~IaHRl~ti~ 672 (709)
T COG2274 619 ALARALLSKPKILLLDEATSALDPETEAIILQNL-LQILQ---GRTVIIIAHRLSTIR 672 (709)
T ss_pred HHHHHhccCCCEEEEeCcccccCHhHHHHHHHHH-HHHhc---CCeEEEEEccchHhh
Confidence 4444457999999999999999997665554333 23332 579999999998875
No 323
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.17 E-value=8.6e-11 Score=137.19 Aligned_cols=127 Identities=18% Similarity=0.149 Sum_probs=82.6
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh----------hcCccccCCceee---eccc------c--
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS----------HIGSFVPADAATV---GLTD------S-- 597 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la----------q~g~~vpa~~~~~---~~~~------~-- 597 (792)
..+.++++|+.. |++++|+||||||||||||.+++..-.. ++ .|||...... .+.+ .
T Consensus 18 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i-~~v~Q~~~~~~~~tv~e~i~~~~~~~ 96 (552)
T TIGR03719 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKV-GYLPQEPQLDPTKTVRENVEEGVAEI 96 (552)
T ss_pred CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEE-EEEeccCCCCCCCcHHHHHHHhhHHH
Confidence 356779999988 9999999999999999999998764211 11 1344332100 0000 0
Q ss_pred ------------------c--------------------------------------chhhccchhHHHH-HHHHHHHHh
Q 043119 598 ------------------K--------------------------------------HMTAEQSSFMIDL-HQVGMMLRQ 620 (792)
Q Consensus 598 ------------------~--------------------------------------~~~~~~s~f~~e~-~~~~~~l~~ 620 (792)
. ......++++.++ ++++.+...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~al 176 (552)
T TIGR03719 97 KDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLL 176 (552)
T ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHHHH
Confidence 0 0011123444444 445555555
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 621 ATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 621 ~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
+.+|+++|||||++|.|+.....+.. ++. +. +.++|++||+.+.+..
T Consensus 177 ~~~p~lLLLDEPt~~LD~~~~~~l~~-~L~---~~--~~tvIiisHd~~~~~~ 223 (552)
T TIGR03719 177 LSKPDMLLLDEPTNHLDAESVAWLEQ-HLQ---EY--PGTVVAVTHDRYFLDN 223 (552)
T ss_pred hcCCCEEEEcCCCCCCChHHHHHHHH-HHH---hC--CCeEEEEeCCHHHHHh
Confidence 78999999999999999988776643 333 33 2489999999998763
No 324
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.17 E-value=5.1e-11 Score=145.27 Aligned_cols=128 Identities=15% Similarity=0.108 Sum_probs=93.3
Q ss_pred eccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHH----------------------HHhhcCccccCCceeeeccc--
Q 043119 542 IPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIV----------------------FLSHIGSFVPADAATVGLTD-- 596 (792)
Q Consensus 542 v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~----------------------~laq~g~~vpa~~~~~~~~~-- 596 (792)
.-+++++..+ +++.++.|||||||||++|++.+.. ...++| |+|...+-.....
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iG-yCPQ~d~l~~~lT~r 658 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLG-YCPQFDALWEELTGR 658 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcc-cCCchhhhhhhccHH
Confidence 4568888888 9999999999999999999875443 223344 5666644211111
Q ss_pred ------------------------------ccchhhccchhHHHHH-HHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHH
Q 043119 597 ------------------------------SKHMTAEQSSFMIDLH-QVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLL 645 (792)
Q Consensus 597 ------------------------------~~~~~~~~s~f~~e~~-~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~ 645 (792)
.+......++++.+++ +++-+++...+|++|+||||+.|.||..+..+
T Consensus 659 EhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~l- 737 (885)
T KOG0059|consen 659 EHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHL- 737 (885)
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHH-
Confidence 0111122456666664 47777788899999999999999999777666
Q ss_pred HHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 646 GGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 646 ~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
|.++..+.+.+ ..+|++||.+|.++.
T Consensus 738 W~ii~~~~k~g--~aiiLTSHsMeE~Ea 763 (885)
T KOG0059|consen 738 WDIIARLRKNG--KAIILTSHSMEEAEA 763 (885)
T ss_pred HHHHHHHHhcC--CEEEEEcCCHHHHHH
Confidence 88999988753 389999999999873
No 325
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.16 E-value=6.5e-10 Score=131.11 Aligned_cols=143 Identities=13% Similarity=0.134 Sum_probs=94.9
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hc
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------------HI 581 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------------q~ 581 (792)
.+.+++....+= .+..+.++++++.+ |+.++|+||||||||||+|.+++..-.. +.
T Consensus 334 ~I~~~~vsf~y~---~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 410 (588)
T PRK13657 334 AVEFDDVSFSYD---NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRN 410 (588)
T ss_pred eEEEEEEEEEeC---CCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhh
Confidence 466666554431 12458999999998 9999999999999999999987654211 12
Q ss_pred CccccCCceee--------ecc-----cc------------c-----------chhhccchhH-HHHHHHHHHHHhCCCC
Q 043119 582 GSFVPADAATV--------GLT-----DS------------K-----------HMTAEQSSFM-IDLHQVGMMLRQATSQ 624 (792)
Q Consensus 582 g~~vpa~~~~~--------~~~-----~~------------~-----------~~~~~~s~f~-~e~~~~~~~l~~~~~~ 624 (792)
-+|||.+..-+ .+. |. + .+..+-+.++ +|.++++.+-....++
T Consensus 411 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~ 490 (588)
T PRK13657 411 IAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDP 490 (588)
T ss_pred eEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 23555553210 000 00 0 0011112233 4566776666668999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 625 SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 625 slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+++|+|||+++.|+.....+.. .+..+.. ++|+|++||+++...
T Consensus 491 ~iliLDEpts~LD~~t~~~i~~-~l~~~~~---~~tvIiitHr~~~~~ 534 (588)
T PRK13657 491 PILILDEATSALDVETEAKVKA-ALDELMK---GRTTFIIAHRLSTVR 534 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHH-HHHHHhc---CCEEEEEEecHHHHH
Confidence 9999999999999988887754 4444432 579999999998765
No 326
>PRK13409 putative ATPase RIL; Provisional
Probab=99.15 E-value=1.1e-10 Score=136.02 Aligned_cols=128 Identities=18% Similarity=0.190 Sum_probs=83.7
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--hhc--------------Cc-----------------cc
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--SHI--------------GS-----------------FV 585 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--aq~--------------g~-----------------~v 585 (792)
.|+..+++ ... |++++|+|||||||||+||.+++.... +.+ |. ++
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~ 165 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHK 165 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeec
Confidence 46778887 455 999999999999999999999875321 010 10 01
Q ss_pred cCCceeee------c------cc--------------ccchhhccchhHHH-HHHHHHHHHhCCCCeEEEEeCCCCCCCH
Q 043119 586 PADAATVG------L------TD--------------SKHMTAEQSSFMID-LHQVGMMLRQATSQSLCLLDEFGKGTLT 638 (792)
Q Consensus 586 pa~~~~~~------~------~~--------------~~~~~~~~s~f~~e-~~~~~~~l~~~~~~slvllDE~~~gt~~ 638 (792)
|..-...+ + .+ ........++++.+ .++++.+...+.+++++|||||++|+|+
T Consensus 166 ~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~ 245 (590)
T PRK13409 166 PQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDI 245 (590)
T ss_pred ccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCH
Confidence 11000000 0 00 00111223444444 4455555556789999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 639 EDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 639 ~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.....+. .++..+.+ +.++|++||+++.+.
T Consensus 246 ~~~~~l~-~~i~~l~~---g~tvIivsHd~~~l~ 275 (590)
T PRK13409 246 RQRLNVA-RLIRELAE---GKYVLVVEHDLAVLD 275 (590)
T ss_pred HHHHHHH-HHHHHHHC---CCEEEEEeCCHHHHH
Confidence 9988885 46777765 468999999998865
No 327
>PLN03073 ABC transporter F family; Provisional
Probab=99.15 E-value=8.5e-11 Score=139.57 Aligned_cols=127 Identities=17% Similarity=0.131 Sum_probs=83.0
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh----------hcCccccCCce-eeec-----------c-
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS----------HIGSFVPADAA-TVGL-----------T- 595 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la----------q~g~~vpa~~~-~~~~-----------~- 595 (792)
..+..+++|+.. |++++|+||||||||||||.++++.-.. .+| |+|.... .+.+ .
T Consensus 522 ~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~ig-yv~Q~~~~~l~~~~~~~~~~~~~~~ 600 (718)
T PLN03073 522 PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMA-VFSQHHVDGLDLSSNPLLYMMRCFP 600 (718)
T ss_pred CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEE-EEeccccccCCcchhHHHHHHHhcC
Confidence 357789999988 9999999999999999999998764221 112 3333210 0000 0
Q ss_pred --c-------------c-cchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Q 043119 596 --D-------------S-KHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVP 658 (792)
Q Consensus 596 --~-------------~-~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~ 658 (792)
+ . .......+.++.++ ++++.+...+.+|.++|||||++|.|+.....+. +.+.+. +
T Consensus 601 ~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~----~~L~~~--~ 674 (718)
T PLN03073 601 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALI----QGLVLF--Q 674 (718)
T ss_pred CCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH----HHHHHc--C
Confidence 0 0 00111234444444 4555555667899999999999999998766653 333332 2
Q ss_pred cEEEEEccChhhhhc
Q 043119 659 PKVLVCTHLTELLNE 673 (792)
Q Consensus 659 ~~~l~~TH~~~l~~~ 673 (792)
.++|++||+.+++..
T Consensus 675 gtvIivSHd~~~i~~ 689 (718)
T PLN03073 675 GGVLMVSHDEHLISG 689 (718)
T ss_pred CEEEEEECCHHHHHH
Confidence 389999999998763
No 328
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.15 E-value=3.7e-10 Score=105.82 Aligned_cols=131 Identities=22% Similarity=0.205 Sum_probs=88.7
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh------------------------------hcCccc---
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS------------------------------HIGSFV--- 585 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la------------------------------q~g~~v--- 585 (792)
..-..|++|+.. |++.+|+|..||||||+|++++.-.... .-| +|
T Consensus 19 ~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG-~VhQn 97 (258)
T COG4107 19 GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWG-FVHQN 97 (258)
T ss_pred CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccc-eeecC
Confidence 344568888887 9999999999999999999886322100 001 11
Q ss_pred cCCceeeecc---------------------------------cccchhhccchhHHHHHHHHHHHHh-CCCCeEEEEeC
Q 043119 586 PADAATVGLT---------------------------------DSKHMTAEQSSFMIDLHQVGMMLRQ-ATSQSLCLLDE 631 (792)
Q Consensus 586 pa~~~~~~~~---------------------------------~~~~~~~~~s~f~~e~~~~~~~l~~-~~~~slvllDE 631 (792)
|++.-++.+- |...+...-.+|+.+|++...|.++ .|.|.||+|||
T Consensus 98 P~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDE 177 (258)
T COG4107 98 PRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDE 177 (258)
T ss_pred ccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecC
Confidence 2221111000 0111222356899999887777655 69999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 632 FGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 632 ~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
|+-|.|..-...+. .++.-|... -+-.++++||++..+..
T Consensus 178 PTGGLDVSVQARLL-DllrgLv~~-l~la~viVTHDl~VarL 217 (258)
T COG4107 178 PTGGLDVSVQARLL-DLLRGLVRE-LGLAVVIVTHDLAVARL 217 (258)
T ss_pred CCCCcchhhHHHHH-HHHHHHHHh-cCceEEEEechhHHHHH
Confidence 99999997777775 466666643 35689999999998764
No 329
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.15 E-value=7.8e-10 Score=129.18 Aligned_cols=145 Identities=20% Similarity=0.171 Sum_probs=94.6
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hc
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------------HI 581 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------------q~ 581 (792)
.+.+++....+- ..+..+.++++++.+ |+.++|+|||||||||++|.+++..-.. +.
T Consensus 316 ~i~~~~v~~~y~--~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~ 393 (544)
T TIGR01842 316 HLSVENVTIVPP--GGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKH 393 (544)
T ss_pred eEEEEEEEEEcC--CCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhh
Confidence 477777665441 123568899999998 9999999999999999999997654211 11
Q ss_pred CccccCCceee--------ec----cc-cc---------------c--------hhhccchhH-HHHHHHHHHHHhCCCC
Q 043119 582 GSFVPADAATV--------GL----TD-SK---------------H--------MTAEQSSFM-IDLHQVGMMLRQATSQ 624 (792)
Q Consensus 582 g~~vpa~~~~~--------~~----~~-~~---------------~--------~~~~~s~f~-~e~~~~~~~l~~~~~~ 624 (792)
-.+||.+..-+ .. .+ .+ . +..+-..++ +|.++++.+....++|
T Consensus 394 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~ 473 (544)
T TIGR01842 394 IGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDP 473 (544)
T ss_pred eEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCC
Confidence 12455442211 00 00 00 0 001112333 4556666666668999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 625 SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 625 slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+++|+|||++|.|+.....+.. .+..+... +.++|++||..+..+
T Consensus 474 ~ililDEpts~LD~~~~~~i~~-~l~~~~~~--~~tvi~ith~~~~~~ 518 (544)
T TIGR01842 474 KLVVLDEPNSNLDEEGEQALAN-AIKALKAR--GITVVVITHRPSLLG 518 (544)
T ss_pred CEEEEeCCccccCHHHHHHHHH-HHHHHhhC--CCEEEEEeCCHHHHH
Confidence 9999999999999988777754 45555432 579999999998654
No 330
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.14 E-value=3.2e-10 Score=115.33 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=37.2
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 622 TSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 622 ~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+++++++|||++|.|+.....+ +.++..+.+ +.++|++||+.++..
T Consensus 148 ~~p~ililDEPt~gLD~~~~~~l-~~~l~~~~~---~~~~iivs~~~~~~~ 194 (212)
T cd03274 148 KPTPLYVMDEIDAALDFRNVSIV-ANYIKERTK---NAQFIVISLRNNMFE 194 (212)
T ss_pred CCCCEEEEcCCCcCCCHHHHHHH-HHHHHHHcC---CCEEEEEECcHHHHH
Confidence 46799999999999999888777 456666643 457899999987654
No 331
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.14 E-value=2.3e-10 Score=135.63 Aligned_cols=130 Identities=14% Similarity=0.124 Sum_probs=86.4
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh------------------------hcCccccCCceee--
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS------------------------HIGSFVPADAATV-- 592 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la------------------------q~g~~vpa~~~~~-- 592 (792)
..+..+++|+.. |++++|+||||||||||+|.++++.... +.-.|+|.+...+
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 100 (648)
T PRK10535 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSH 100 (648)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCC
Confidence 357789999988 9999999999999999999998764210 1112344332111
Q ss_pred -eccc-------------c----------------cchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHH
Q 043119 593 -GLTD-------------S----------------KHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDG 641 (792)
Q Consensus 593 -~~~~-------------~----------------~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~ 641 (792)
.+.+ . .........++.++ +++..+...+.+|+++|+|||++|.|+...
T Consensus 101 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~ 180 (648)
T PRK10535 101 LTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG 180 (648)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 0000 0 00001122333333 444444455789999999999999999888
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 642 IGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 642 ~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+. .+++.+.+. +.++|++||+.++++
T Consensus 181 ~~l~-~ll~~l~~~--g~tilivsH~~~~~~ 208 (648)
T PRK10535 181 EEVM-AILHQLRDR--GHTVIIVTHDPQVAA 208 (648)
T ss_pred HHHH-HHHHHHHhc--CCEEEEECCCHHHHH
Confidence 8875 567777653 679999999999874
No 332
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.14 E-value=1.5e-10 Score=110.63 Aligned_cols=130 Identities=19% Similarity=0.143 Sum_probs=85.1
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhc-----Cccc--c--------CCceeeeccc--------
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHI-----GSFV--P--------ADAATVGLTD-------- 596 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~-----g~~v--p--------a~~~~~~~~~-------- 596 (792)
.+..|++++.. |+++++.||.||||||+|+.+++++-.++. |-++ | ...+-+++.+
T Consensus 19 ~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafg 98 (259)
T COG4525 19 SALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFG 98 (259)
T ss_pred hhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHH
Confidence 35568999988 999999999999999999999887755431 1112 1 1111122221
Q ss_pred ---------cc------ch---------hhccchhHHHHHHHHHHHH-hCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 043119 597 ---------SK------HM---------TAEQSSFMIDLHQVGMMLR-QATSQSLCLLDEFGKGTLTEDGIGLLGGTINY 651 (792)
Q Consensus 597 ---------~~------~~---------~~~~s~f~~e~~~~~~~l~-~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~ 651 (792)
.+ .+ ....=..+.+|+|..-+.+ .+-+|.+++||||+...|...+..+-.-+++.
T Consensus 99 L~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldl 178 (259)
T COG4525 99 LQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDL 178 (259)
T ss_pred HHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHH
Confidence 00 00 0001122345555433333 36799999999999999999998886555555
Q ss_pred HHhCCCCcEEEEEccChhhhh
Q 043119 652 FVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 652 l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.... +..++++||+.+.+-
T Consensus 179 w~~t--gk~~lliTH~ieEAl 197 (259)
T COG4525 179 WQET--GKQVLLITHDIEEAL 197 (259)
T ss_pred HHHh--CCeEEEEeccHHHHH
Confidence 4444 678999999998763
No 333
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.13 E-value=1e-09 Score=129.66 Aligned_cols=143 Identities=13% Similarity=0.124 Sum_probs=94.3
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hc
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------------HI 581 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------------q~ 581 (792)
.+.+++....+- .+..+.+|++++.+ |+.++|+|||||||||++|.+++..-.. +.
T Consensus 340 ~i~~~~v~f~y~---~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~ 416 (592)
T PRK10790 340 RIDIDNVSFAYR---DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQG 416 (592)
T ss_pred eEEEEEEEEEeC---CCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhh
Confidence 467766654431 13468899999998 9999999999999999999997654221 11
Q ss_pred CccccCCceee--------ec---cc-------------cc---c--------hhhccchhH-HHHHHHHHHHHhCCCCe
Q 043119 582 GSFVPADAATV--------GL---TD-------------SK---H--------MTAEQSSFM-IDLHQVGMMLRQATSQS 625 (792)
Q Consensus 582 g~~vpa~~~~~--------~~---~~-------------~~---~--------~~~~~s~f~-~e~~~~~~~l~~~~~~s 625 (792)
-+|||.+..-+ .+ .+ .+ . +..+-..++ +|.++++.+-....+++
T Consensus 417 i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~ 496 (592)
T PRK10790 417 VAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQ 496 (592)
T ss_pred eEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 23555553211 00 00 00 0 001112233 46666766666679999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 626 LCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 626 lvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
++|+|||+++.|+.....+.. .+..+.. ++|+|++||.++...
T Consensus 497 illlDEpts~LD~~t~~~i~~-~l~~~~~---~~tvIivtHr~~~l~ 539 (592)
T PRK10790 497 ILILDEATANIDSGTEQAIQQ-ALAAVRE---HTTLVVIAHRLSTIV 539 (592)
T ss_pred EEEEeCCcccCCHHHHHHHHH-HHHHHhC---CCEEEEEecchHHHH
Confidence 999999999999988777754 4444433 479999999998765
No 334
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.13 E-value=3.5e-10 Score=113.85 Aligned_cols=125 Identities=16% Similarity=0.092 Sum_probs=73.3
Q ss_pred eeecCCCcEEEEEcCCCCCchhHHHHHHHHHHHhhc-----Cc----ccc--CCceeeeccc------------------
Q 043119 546 TRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHI-----GS----FVP--ADAATVGLTD------------------ 596 (792)
Q Consensus 546 ~~~~~~~~~~~ltGpN~~GKSt~lk~i~~~~~laq~-----g~----~vp--a~~~~~~~~~------------------ 596 (792)
+.++.+..+++|+||||+||||+|.++..... ... |. ++. ...+.+.+.-
T Consensus 15 ~~l~f~~gl~~i~G~NGsGKStll~ai~~~l~-~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T cd03276 15 LQIEFGPRVNFIVGNNGSGKSAILTALTIGLG-GKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDMA 93 (198)
T ss_pred eEEecCCCeEEEECCCCCcHHHHHHHHHHHhc-CCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHHH
Confidence 44444445889999999999999998874321 110 10 000 0111111100
Q ss_pred ------ccchhhccchhHHHHHHHHHHHH-h----CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEE
Q 043119 597 ------SKHMTAEQSSFMIDLHQVGMMLR-Q----ATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTC-DVPPKVLVC 664 (792)
Q Consensus 597 ------~~~~~~~~s~f~~e~~~~~~~l~-~----~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~-~~~~~~l~~ 664 (792)
.+.......+++.++++...+.. . +.+++++|+|||++|+|+.....+.. .+..+... ..+.+++++
T Consensus 94 ~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~-~l~~~~~~~~~~~~iii~ 172 (198)
T cd03276 94 RSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTD-LLVKEAKKQPGRQFIFIT 172 (198)
T ss_pred HHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHH-HHHHHHhcCCCcEEEEEE
Confidence 00011123445555554333332 2 48999999999999999988888755 44444432 124589999
Q ss_pred ccChhhhh
Q 043119 665 THLTELLN 672 (792)
Q Consensus 665 TH~~~l~~ 672 (792)
||+++.+.
T Consensus 173 th~~~~i~ 180 (198)
T cd03276 173 PQDISGLA 180 (198)
T ss_pred CCcccccc
Confidence 99998764
No 335
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.13 E-value=1.1e-09 Score=129.05 Aligned_cols=144 Identities=12% Similarity=0.104 Sum_probs=94.2
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhc
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------------------SHI 581 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------------------aq~ 581 (792)
.+.+++..--+- ..+..+.++++++.+ |+.++|+||||||||||+|.+++..-. .+.
T Consensus 341 ~i~~~~vsf~y~--~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 418 (582)
T PRK11176 341 DIEFRNVTFTYP--GKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418 (582)
T ss_pred eEEEEEEEEecC--CCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhh
Confidence 366666532220 123568999999998 999999999999999999999876421 111
Q ss_pred CccccCCcee----------eec---cc-c---------------cchh--------hccchhH-HHHHHHHHHHHhCCC
Q 043119 582 GSFVPADAAT----------VGL---TD-S---------------KHMT--------AEQSSFM-IDLHQVGMMLRQATS 623 (792)
Q Consensus 582 g~~vpa~~~~----------~~~---~~-~---------------~~~~--------~~~s~f~-~e~~~~~~~l~~~~~ 623 (792)
-+|||.+..- ++. .+ . +.+. .+-..++ +|.++++.+-....+
T Consensus 419 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~ 498 (582)
T PRK11176 419 VALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRD 498 (582)
T ss_pred ceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 2356655321 110 11 0 0000 1112244 455666666566799
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 624 QSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 624 ~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
++++|+|||+++.|+.....+..+ +..+.+ ++|+|++||.++...
T Consensus 499 ~~ililDEptsaLD~~t~~~i~~~-l~~~~~---~~tvI~VtHr~~~~~ 543 (582)
T PRK11176 499 SPILILDEATSALDTESERAIQAA-LDELQK---NRTSLVIAHRLSTIE 543 (582)
T ss_pred CCEEEEECccccCCHHHHHHHHHH-HHHHhC---CCEEEEEecchHHHH
Confidence 999999999999999888877544 344433 579999999998765
No 336
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=1.1e-09 Score=120.04 Aligned_cols=151 Identities=18% Similarity=0.217 Sum_probs=102.0
Q ss_pred ceecCCCcEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHH------------------
Q 043119 516 PILTLEPLLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIV------------------ 576 (792)
Q Consensus 516 P~~~~~~~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~------------------ 576 (792)
|.....+.|.+.+.---+- .+..|.++++|+.+ |+=++|+|+|||||||+||++....
T Consensus 344 ~i~~~~~~I~F~dV~f~y~---~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~ 420 (591)
T KOG0057|consen 344 PIELFGGSIEFDDVHFSYG---PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSL 420 (591)
T ss_pred CcccCCCcEEEEeeEEEeC---CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhCh
Confidence 3333334466666543332 24558899999999 9999999999999999999885432
Q ss_pred -HHhhcCccccCCceee----------e---ccc------------cc---chhhccchh---------HHHHHHHHHHH
Q 043119 577 -FLSHIGSFVPADAATV----------G---LTD------------SK---HMTAEQSSF---------MIDLHQVGMML 618 (792)
Q Consensus 577 -~laq~g~~vpa~~~~~----------~---~~~------------~~---~~~~~~s~f---------~~e~~~~~~~l 618 (792)
-+-|+-.+||.+..-+ | .-+ .+ .+..+.+|- .+|+|+++.+-
T Consensus 421 ~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaR 500 (591)
T KOG0057|consen 421 ESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLAR 500 (591)
T ss_pred HHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHH
Confidence 2344556788875321 1 000 00 111121111 25778888777
Q ss_pred HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 619 RQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 619 ~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
....+++++++||+++..|...-..|...+... .. +.|+|++-|++.++..
T Consensus 501 a~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~---~rTvI~IvH~l~ll~~ 551 (591)
T KOG0057|consen 501 AFLKDAPILLLDEATSALDSETEREILDMIMDV-MS---GRTVIMIVHRLDLLKD 551 (591)
T ss_pred HHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cC---CCeEEEEEecchhHhc
Confidence 778999999999999999998877776655552 22 5699999999999763
No 337
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.12 E-value=6.7e-10 Score=133.52 Aligned_cols=144 Identities=18% Similarity=0.188 Sum_probs=94.0
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhc
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------------------SHI 581 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------------------aq~ 581 (792)
.|.+++...-+- ..+..+.+|++++.+ |+.++|+|||||||||++|.+++..-. .+.
T Consensus 463 ~I~~~~vsf~Y~--~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~ 540 (694)
T TIGR03375 463 EIEFRNVSFAYP--GQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRN 540 (694)
T ss_pred eEEEEEEEEEeC--CCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhc
Confidence 466666544331 123568899999998 999999999999999999998755311 111
Q ss_pred CccccCCcee--------eecc----c--------------------cc----chhhccchhHH-HHHHHHHHHHhCCCC
Q 043119 582 GSFVPADAAT--------VGLT----D--------------------SK----HMTAEQSSFMI-DLHQVGMMLRQATSQ 624 (792)
Q Consensus 582 g~~vpa~~~~--------~~~~----~--------------------~~----~~~~~~s~f~~-e~~~~~~~l~~~~~~ 624 (792)
-.+||.+..- +.+. + +. .+..+-..+++ |.++++.+-....+|
T Consensus 541 i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p 620 (694)
T TIGR03375 541 IGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDP 620 (694)
T ss_pred cEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 2355554321 0000 0 00 01111123443 455566555567999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 625 SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 625 slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+++|+|||+++.|+.....+... +..+.+ ++|+|++||.++...
T Consensus 621 ~iliLDE~Ts~LD~~te~~i~~~-l~~~~~---~~T~iiItHrl~~~~ 664 (694)
T TIGR03375 621 PILLLDEPTSAMDNRSEERFKDR-LKRWLA---GKTLVLVTHRTSLLD 664 (694)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHH-HHHHhC---CCEEEEEecCHHHHH
Confidence 99999999999999888888554 444443 579999999998765
No 338
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.11 E-value=1.1e-09 Score=128.67 Aligned_cols=143 Identities=13% Similarity=0.129 Sum_probs=93.4
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hc
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------------HI 581 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------------q~ 581 (792)
.+.+++....+- .++.+.++++++.+ |+.++|+|||||||||+++.+++..-.. +.
T Consensus 334 ~i~~~~v~~~y~---~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 410 (585)
T TIGR01192 334 AVEFRHITFEFA---NSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKS 410 (585)
T ss_pred eEEEEEEEEECC---CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhh
Confidence 466666654331 12457899999988 9999999999999999999987654211 11
Q ss_pred CccccCCcee----------eec--cc-c------------c---c--------hhhccchhH-HHHHHHHHHHHhCCCC
Q 043119 582 GSFVPADAAT----------VGL--TD-S------------K---H--------MTAEQSSFM-IDLHQVGMMLRQATSQ 624 (792)
Q Consensus 582 g~~vpa~~~~----------~~~--~~-~------------~---~--------~~~~~s~f~-~e~~~~~~~l~~~~~~ 624 (792)
-.+||.+..- ++. .+ . + . ...+-..++ +|.++++.+...+.+|
T Consensus 411 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p 490 (585)
T TIGR01192 411 IATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNA 490 (585)
T ss_pred eEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 1244444211 000 00 0 0 0 001111233 4566677666678999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 625 SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 625 slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+++|+|||++|.|+.....+.. .++.+.+ +.++|++||..+...
T Consensus 491 ~ililDEpts~LD~~~~~~i~~-~l~~~~~---~~tvI~isH~~~~~~ 534 (585)
T TIGR01192 491 PILVLDEATSALDVETEARVKN-AIDALRK---NRTTFIIAHRLSTVR 534 (585)
T ss_pred CEEEEECCccCCCHHHHHHHHH-HHHHHhC---CCEEEEEEcChHHHH
Confidence 9999999999999988887754 5555533 579999999998764
No 339
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.11 E-value=1.5e-09 Score=127.87 Aligned_cols=144 Identities=13% Similarity=0.116 Sum_probs=94.1
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhc
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------------------SHI 581 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------------------aq~ 581 (792)
.+.+++...-+- ..+..+.++++++.+ |+.++|+||||||||||+|.+++..-. .+.
T Consensus 330 ~i~~~~v~f~y~--~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~ 407 (571)
T TIGR02203 330 DVEFRNVTFRYP--GRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQ 407 (571)
T ss_pred eEEEEEEEEEcC--CCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhh
Confidence 466665543321 113568899999988 999999999999999999999766421 111
Q ss_pred CccccCCcee--------eec-----cc-------------cc---c--------hhhccchhH-HHHHHHHHHHHhCCC
Q 043119 582 GSFVPADAAT--------VGL-----TD-------------SK---H--------MTAEQSSFM-IDLHQVGMMLRQATS 623 (792)
Q Consensus 582 g~~vpa~~~~--------~~~-----~~-------------~~---~--------~~~~~s~f~-~e~~~~~~~l~~~~~ 623 (792)
-+|||.+..- +.. .+ .+ . +..+-..++ +|.++++.+-..+.+
T Consensus 408 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~ 487 (571)
T TIGR02203 408 VALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKD 487 (571)
T ss_pred ceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 2355554321 111 11 00 0 111112233 455666666666899
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 624 QSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 624 ~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
++++|||||+++.|+.....+.. .+..+.+ ++++|++||+.....
T Consensus 488 ~~illLDEpts~LD~~~~~~i~~-~L~~~~~---~~tiIiitH~~~~~~ 532 (571)
T TIGR02203 488 APILILDEATSALDNESERLVQA-ALERLMQ---GRTTLVIAHRLSTIE 532 (571)
T ss_pred CCEEEEeCccccCCHHHHHHHHH-HHHHHhC---CCEEEEEehhhHHHH
Confidence 99999999999999998888854 4444433 469999999998764
No 340
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.11 E-value=4.2e-10 Score=105.45 Aligned_cols=130 Identities=20% Similarity=0.148 Sum_probs=89.8
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH--------Hh-----------------hcCccccCCceee
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF--------LS-----------------HIGSFVPADAATV 592 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~--------la-----------------q~g~~vpa~~~~~ 592 (792)
.-.|..++++... |+.++|+||.||||||+|-.++++-- ++ ++| ||.....-+
T Consensus 22 ~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vG-fVFQSF~Li 100 (228)
T COG4181 22 ELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVG-FVFQSFHLI 100 (228)
T ss_pred ceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhcccee-EEEEeeecc
Confidence 3467889999988 99999999999999999998876531 11 122 222111111
Q ss_pred eccc------------------ccc-----------------hhhccchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCC
Q 043119 593 GLTD------------------SKH-----------------MTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTL 637 (792)
Q Consensus 593 ~~~~------------------~~~-----------------~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~ 637 (792)
+-.+ .+. ....+| ..|.++.+.+-+.+.+|.+++-|||+-+.|
T Consensus 101 p~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLS--GGEQQRVAiARAfa~~P~vLfADEPTGNLD 178 (228)
T COG4181 101 PNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLS--GGEQQRVALARAFAGRPDVLFADEPTGNLD 178 (228)
T ss_pred ccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccC--chHHHHHHHHHHhcCCCCEEeccCCCCCcc
Confidence 1100 000 001122 257778777777789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 638 TEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 638 ~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
...|..|+.-+...-.++ +.|.+++|||..++..
T Consensus 179 ~~Tg~~iaDLlF~lnre~--G~TlVlVTHD~~LA~R 212 (228)
T COG4181 179 RATGDKIADLLFALNRER--GTTLVLVTHDPQLAAR 212 (228)
T ss_pred hhHHHHHHHHHHHHhhhc--CceEEEEeCCHHHHHh
Confidence 999999986444444444 7899999999999863
No 341
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.10 E-value=3.5e-10 Score=122.94 Aligned_cols=128 Identities=20% Similarity=0.220 Sum_probs=87.0
Q ss_pred eccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhc-----Cccc----cCC--ceeee-------ccc----cc
Q 043119 542 IPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHI-----GSFV----PAD--AATVG-------LTD----SK 598 (792)
Q Consensus 542 v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~-----g~~v----pa~--~~~~~-------~~~----~~ 598 (792)
-.++++|+.. |++++|.|.||+|||||++++.++.-.-.- |-.| |.+ +..++ +++ .+
T Consensus 19 And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~E 98 (501)
T COG3845 19 ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAE 98 (501)
T ss_pred ecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhh
Confidence 3456899988 999999999999999999988654321100 1000 110 00111 111 00
Q ss_pred ----------------------------------chhhccchhHHHHHHHHHHHHh-CCCCeEEEEeCCCCCCCHHHHHH
Q 043119 599 ----------------------------------HMTAEQSSFMIDLHQVGMMLRQ-ATSQSLCLLDEFGKGTLTEDGIG 643 (792)
Q Consensus 599 ----------------------------------~~~~~~s~f~~e~~~~~~~l~~-~~~~slvllDE~~~gt~~~~~~~ 643 (792)
......+..+.+++|...|++. ...+.++|||||++=+.|.+...
T Consensus 99 NiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~ 178 (501)
T COG3845 99 NIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADE 178 (501)
T ss_pred hhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 0111244555666777777765 47899999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 644 LLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 644 l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+. .+++.|.+. |.++||+||=+..+.
T Consensus 179 lf-~~l~~l~~~--G~tIi~ITHKL~Ev~ 204 (501)
T COG3845 179 LF-EILRRLAAE--GKTIIFITHKLKEVM 204 (501)
T ss_pred HH-HHHHHHHHC--CCEEEEEeccHHHHH
Confidence 96 588888886 789999999886653
No 342
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.10 E-value=1.6e-10 Score=125.42 Aligned_cols=65 Identities=12% Similarity=-0.047 Sum_probs=48.2
Q ss_pred hhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 606 SFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 606 ~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.++.++ ++++.+...+.+|+++|||||++|.|+.....+. ..+..+.+. .+.++|++||+.+.+.
T Consensus 100 ~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~-~~l~~l~~~-~g~tiiivTHd~~e~~ 165 (325)
T TIGR01187 100 QLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQ-LELKTIQEQ-LGITFVFVTHDQEEAM 165 (325)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHh-cCCEEEEEeCCHHHHH
Confidence 344444 4455555567899999999999999998888885 566666543 2579999999998754
No 343
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.10 E-value=1.1e-09 Score=128.35 Aligned_cols=129 Identities=14% Similarity=0.124 Sum_probs=86.0
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hcCccccCCceee------
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------------HIGSFVPADAATV------ 592 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------------q~g~~vpa~~~~~------ 592 (792)
..+.++++++.+ |+.++|+|||||||||+++.+++..-.. +.-.+||.+..-+
T Consensus 328 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~ 407 (569)
T PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVAN 407 (569)
T ss_pred CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHH
Confidence 568899999988 9999999999999999999997654211 1112444432110
Q ss_pred ----eccc---------------cc---ch--------hhccchhH-HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHH
Q 043119 593 ----GLTD---------------SK---HM--------TAEQSSFM-IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDG 641 (792)
Q Consensus 593 ----~~~~---------------~~---~~--------~~~~s~f~-~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~ 641 (792)
+..+ .+ .+ ..+-..++ +|.++++.+...+.+|+++|+|||++|.|+...
T Consensus 408 Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~ 487 (569)
T PRK10789 408 NIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTE 487 (569)
T ss_pred HHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHH
Confidence 0000 00 00 01112233 345666666666899999999999999999888
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 642 IGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 642 ~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+.. .+..+.+ +.|+|++||.++...
T Consensus 488 ~~i~~-~l~~~~~---~~tii~itH~~~~~~ 514 (569)
T PRK10789 488 HQILH-NLRQWGE---GRTVIISAHRLSALT 514 (569)
T ss_pred HHHHH-HHHHHhC---CCEEEEEecchhHHH
Confidence 87754 4444432 579999999998754
No 344
>PLN03073 ABC transporter F family; Provisional
Probab=99.10 E-value=2.9e-10 Score=135.11 Aligned_cols=63 Identities=22% Similarity=0.256 Sum_probs=44.9
Q ss_pred chhHHHHHH-HHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 605 SSFMIDLHQ-VGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 605 s~f~~e~~~-~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
++++.++++ ++.+...+.+|+++|||||++|.|+.....+. +++.+. +.++|++||+.+.+..
T Consensus 343 ~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~----~~L~~~--~~tviivsHd~~~l~~ 406 (718)
T PLN03073 343 KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLE----TYLLKW--PKTFIVVSHAREFLNT 406 (718)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH----HHHHHc--CCEEEEEECCHHHHHH
Confidence 455555544 44444457899999999999999998766653 333333 4689999999988753
No 345
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.09 E-value=5.5e-10 Score=116.33 Aligned_cols=131 Identities=15% Similarity=0.118 Sum_probs=88.6
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH---HhhcCc----------cccCCc------eeeeccc----
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF---LSHIGS----------FVPADA------ATVGLTD---- 596 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~---laq~g~----------~vpa~~------~~~~~~~---- 596 (792)
.+-++++|+.. |++++|+|..||||||+.++|..+.- ....+. ..+.+. ..++.+.
T Consensus 19 ~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~ 98 (316)
T COG0444 19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPM 98 (316)
T ss_pred EEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCch
Confidence 46779999998 99999999999999999999877653 111110 001100 0111110
Q ss_pred -------------------ccch-hh-------------------------ccchhHHHHHH-HHHHHHhCCCCeEEEEe
Q 043119 597 -------------------SKHM-TA-------------------------EQSSFMIDLHQ-VGMMLRQATSQSLCLLD 630 (792)
Q Consensus 597 -------------------~~~~-~~-------------------------~~s~f~~e~~~-~~~~l~~~~~~slvllD 630 (792)
.... .. =--.|+++|+| +..++..+.+|+|+|.|
T Consensus 99 ~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIAD 178 (316)
T COG0444 99 TSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIAD 178 (316)
T ss_pred hhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeC
Confidence 0000 00 01134456644 44555668999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 631 EFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 631 E~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
|||.++|..-...|. .+++.+.+. .+.++||+|||+.++..
T Consensus 179 EPTTALDvt~QaqIl-~Ll~~l~~e-~~~aiilITHDl~vva~ 219 (316)
T COG0444 179 EPTTALDVTVQAQIL-DLLKELQRE-KGTALILITHDLGVVAE 219 (316)
T ss_pred CCcchhhHHHHHHHH-HHHHHHHHh-cCCEEEEEeCCHHHHHH
Confidence 999999999999986 588888874 37899999999998764
No 346
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.09 E-value=1.6e-09 Score=127.86 Aligned_cols=141 Identities=14% Similarity=0.145 Sum_probs=94.3
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC-------------------
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIG------------------- 582 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g------------------- 582 (792)
.+.+++...-.. .+..|.+|++++.+ |+.++|+||+||||||+++.++... . +-|
T Consensus 349 ~i~~~~vsf~~~---~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p-~~G~I~i~g~~i~~~~~~~lr~ 423 (588)
T PRK11174 349 TIEAEDLEILSP---DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P-YQGSLKINGIELRELDPESWRK 423 (588)
T ss_pred eEEEEeeEEecc---CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C-CCcEEEECCEecccCCHHHHHh
Confidence 477776642111 24568899999998 9999999999999999999997664 2 222
Q ss_pred --ccccCCcee----------eec--cc-c------------c-----------chhhccchhH-HHHHHHHHHHHhCCC
Q 043119 583 --SFVPADAAT----------VGL--TD-S------------K-----------HMTAEQSSFM-IDLHQVGMMLRQATS 623 (792)
Q Consensus 583 --~~vpa~~~~----------~~~--~~-~------------~-----------~~~~~~s~f~-~e~~~~~~~l~~~~~ 623 (792)
+|||.+..- ++- .+ . + .+..+-..++ +|.+|++.+-....+
T Consensus 424 ~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~ 503 (588)
T PRK11174 424 HLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQP 503 (588)
T ss_pred heEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcC
Confidence 245554221 110 00 0 0 0001112233 456666666666899
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 624 QSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 624 ~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|+++|||||+++.|+.....+.. .+..+.+ +.|+|++||.++...
T Consensus 504 ~~IliLDE~TSaLD~~te~~i~~-~l~~~~~---~~TvIiItHrl~~i~ 548 (588)
T PRK11174 504 CQLLLLDEPTASLDAHSEQLVMQ-ALNAASR---RQTTLMVTHQLEDLA 548 (588)
T ss_pred CCEEEEeCCccCCCHHHHHHHHH-HHHHHhC---CCEEEEEecChHHHH
Confidence 99999999999999988888865 4444433 469999999998765
No 347
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.09 E-value=4.7e-10 Score=109.17 Aligned_cols=131 Identities=17% Similarity=0.170 Sum_probs=86.6
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh--c---Cccc---cC-Cce----------------ee
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH--I---GSFV---PA-DAA----------------TV 592 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq--~---g~~v---pa-~~~----------------~~ 592 (792)
.+.+.+.++++.. +.|+.|+|.|||||||+++.|++-..+.- + |.-| |. .+| .+
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 4678899999998 99999999999999999999986654321 0 1001 00 000 00
Q ss_pred eccc------cc-------------------------------chhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCC
Q 043119 593 GLTD------SK-------------------------------HMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGK 634 (792)
Q Consensus 593 ~~~~------~~-------------------------------~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~ 634 (792)
.+.. .| .+.....-|+++. +.++-+++.+.+|.+++|||=++
T Consensus 98 TieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTA 177 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTA 177 (263)
T ss_pred cHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhh
Confidence 0000 01 0111122233333 44566666779999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhh
Q 043119 635 GTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELL 671 (792)
Q Consensus 635 gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~ 671 (792)
..||..+..+.. .-+.+.++. +-|++++||.++-+
T Consensus 178 ALDPkta~~vm~-lT~kiV~~~-klTtlMVTHnm~~A 212 (263)
T COG1101 178 ALDPKTAEFVME-LTAKIVEEH-KLTTLMVTHNMEDA 212 (263)
T ss_pred cCCcchHHHHHH-HHHHHHHhc-CCceEEEeccHHHH
Confidence 999999888865 444555543 67899999999876
No 348
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.09 E-value=2e-10 Score=135.48 Aligned_cols=126 Identities=12% Similarity=0.128 Sum_probs=89.1
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hcCccccCCceeeec---
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------------HIGSFVPADAATVGL--- 594 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------------q~g~~vpa~~~~~~~--- 594 (792)
++.+.+|+++... |++++|+|||||||||||+.+++..-.. +.-.|||.+...++-
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 4668889999988 9999999999999999999998753211 011355554321110
Q ss_pred cc----------c-------------------------c-chh-----hccchhHHHHHHHHHHHHhCCCCeEEEEeCCC
Q 043119 595 TD----------S-------------------------K-HMT-----AEQSSFMIDLHQVGMMLRQATSQSLCLLDEFG 633 (792)
Q Consensus 595 ~~----------~-------------------------~-~~~-----~~~s~f~~e~~~~~~~l~~~~~~slvllDE~~ 633 (792)
.+ . + .+. .+.| .+|.++++.+...+++|+++++|||+
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LS--gGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLS--GGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcC--cchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 00 0 0 000 1122 24567777777778999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChh
Q 043119 634 KGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTE 669 (792)
Q Consensus 634 ~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~ 669 (792)
+|.|+..+..+.. .++.++++ +.++|++||.+.
T Consensus 195 sgLD~~~~~~l~~-~L~~l~~~--g~tvi~~~hq~~ 227 (617)
T TIGR00955 195 SGLDSFMAYSVVQ-VLKGLAQK--GKTIICTIHQPS 227 (617)
T ss_pred cchhHHHHHHHHH-HHHHHHhC--CCEEEEEeCCCC
Confidence 9999999998864 66777764 679999999974
No 349
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.09 E-value=2e-09 Score=127.92 Aligned_cols=126 Identities=14% Similarity=0.116 Sum_probs=83.2
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC----------ccccCCcee----------eec----
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIG----------SFVPADAAT----------VGL---- 594 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g----------~~vpa~~~~----------~~~---- 594 (792)
..+.++++++.. |+.++|+|||||||||++|.+++..-. .-| .|||.+..- ++.
T Consensus 465 ~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~-~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~ 543 (659)
T TIGR00954 465 DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPV-YGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSED 543 (659)
T ss_pred CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhh
Confidence 467889999988 999999999999999999999876321 111 245544210 100
Q ss_pred -----c-c------------ccchhh---------ccchhHHH-HHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHH
Q 043119 595 -----T-D------------SKHMTA---------EQSSFMID-LHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLG 646 (792)
Q Consensus 595 -----~-~------------~~~~~~---------~~s~f~~e-~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~ 646 (792)
. + .+.... ....++.+ .++++.+...+.+|+++|+|||++|.|+.....+.
T Consensus 544 ~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~- 622 (659)
T TIGR00954 544 MKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMY- 622 (659)
T ss_pred hhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH-
Confidence 0 0 000000 01344444 45555555567999999999999999997665553
Q ss_pred HHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 647 GTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 647 ~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+.+.+. +.++|++||+.++..
T Consensus 623 ---~~l~~~--~~tvI~isH~~~~~~ 643 (659)
T TIGR00954 623 ---RLCREF--GITLFSVSHRKSLWK 643 (659)
T ss_pred ---HHHHHc--CCEEEEEeCchHHHH
Confidence 333333 579999999998764
No 350
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.08 E-value=3.4e-10 Score=128.77 Aligned_cols=129 Identities=19% Similarity=0.165 Sum_probs=80.7
Q ss_pred cCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh------hcC---ccccCCceee---eccc--------
Q 043119 538 VDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS------HIG---SFVPADAATV---GLTD-------- 596 (792)
Q Consensus 538 ~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la------q~g---~~vpa~~~~~---~~~~-------- 596 (792)
.++.+.+++++... |+-++|+|+||+|||||||.+++..... .-| .|++.+...- .+.|
T Consensus 14 g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~ 93 (530)
T COG0488 14 GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGE 93 (530)
T ss_pred CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHH
Confidence 34566678888888 9999999999999999999987554110 000 0111111100 0000
Q ss_pred ---------------------------------------------------ccchhhccchhHHHHHH-HHHHHHhCCCC
Q 043119 597 ---------------------------------------------------SKHMTAEQSSFMIDLHQ-VGMMLRQATSQ 624 (792)
Q Consensus 597 ---------------------------------------------------~~~~~~~~s~f~~e~~~-~~~~l~~~~~~ 624 (792)
+.. ....++++++.+. ++-+-....+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~p 172 (530)
T COG0488 94 LRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRRRVALARALLEEP 172 (530)
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHHHHHHHHHHhcCC
Confidence 000 2234566655543 33333346999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 625 SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 625 slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
+++||||||+.+|.. ++.| +-++|.+.. + ++|++|||-++++.
T Consensus 173 DlLLLDEPTNHLD~~---~i~W-Le~~L~~~~-g-tviiVSHDR~FLd~ 215 (530)
T COG0488 173 DLLLLDEPTNHLDLE---SIEW-LEDYLKRYP-G-TVIVVSHDRYFLDN 215 (530)
T ss_pred CEEEEcCCCcccCHH---HHHH-HHHHHHhCC-C-cEEEEeCCHHHHHH
Confidence 999999998888763 4444 456666652 4 89999999999874
No 351
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.08 E-value=2.4e-09 Score=126.23 Aligned_cols=145 Identities=12% Similarity=0.110 Sum_probs=95.1
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hc
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------------HI 581 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------------q~ 581 (792)
.+.+++....+-+ ..++.+.++++++.+ |+.++|+|||||||||++|.+++..-.. +.
T Consensus 337 ~i~~~~v~f~y~~-~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 415 (576)
T TIGR02204 337 EIEFEQVNFAYPA-RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR 415 (576)
T ss_pred eEEEEEEEEECCC-CCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHh
Confidence 4777766544311 112578899999998 9999999999999999999998664221 11
Q ss_pred CccccCCceee--------ecc----c-c------------c-----------chhhccchhH-HHHHHHHHHHHhCCCC
Q 043119 582 GSFVPADAATV--------GLT----D-S------------K-----------HMTAEQSSFM-IDLHQVGMMLRQATSQ 624 (792)
Q Consensus 582 g~~vpa~~~~~--------~~~----~-~------------~-----------~~~~~~s~f~-~e~~~~~~~l~~~~~~ 624 (792)
-.|+|.+..-+ .+. + . + .+..+.+.++ +|.++++.+-....++
T Consensus 416 i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~ 495 (576)
T TIGR02204 416 MALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDA 495 (576)
T ss_pred ceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCC
Confidence 23555543210 110 0 0 0 0111122343 4666666666667899
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 625 SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 625 slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+++|+|||+++.|+.....+. ..++.+.+ +.++|++||.++...
T Consensus 496 ~ililDEpts~lD~~~~~~i~-~~l~~~~~---~~t~IiitH~~~~~~ 539 (576)
T TIGR02204 496 PILLLDEATSALDAESEQLVQ-QALETLMK---GRTTLIIAHRLATVL 539 (576)
T ss_pred CeEEEeCcccccCHHHHHHHH-HHHHHHhC---CCEEEEEecchHHHH
Confidence 999999999999998776664 34444433 579999999998764
No 352
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.08 E-value=2.2e-09 Score=128.99 Aligned_cols=141 Identities=11% Similarity=0.126 Sum_probs=93.0
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH---------------------hh
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL---------------------SH 580 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l---------------------aq 580 (792)
.+.+++...-+- ..+..+.+|++++.+ |+.++|+|||||||||++|.+++..-. .+
T Consensus 451 ~I~~~nvsf~Y~--~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 528 (686)
T TIGR03797 451 AIEVDRVTFRYR--PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQ 528 (686)
T ss_pred eEEEEEEEEEcC--CCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhc
Confidence 467776654431 123578999999998 999999999999999999998765421 12
Q ss_pred cCccccCCceee--------ec---cc-------------cc-----------chhhccchhH-HHHHHHHHHHHhCCCC
Q 043119 581 IGSFVPADAATV--------GL---TD-------------SK-----------HMTAEQSSFM-IDLHQVGMMLRQATSQ 624 (792)
Q Consensus 581 ~g~~vpa~~~~~--------~~---~~-------------~~-----------~~~~~~s~f~-~e~~~~~~~l~~~~~~ 624 (792)
+ .+||.+..-+ .+ .+ .+ .+..+-+.++ +|.++++.+-....+|
T Consensus 529 i-~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p 607 (686)
T TIGR03797 529 L-GVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKP 607 (686)
T ss_pred c-EEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 2 3555553210 00 11 00 0111112344 3555666555668999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 625 SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 625 slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+++|+|||+++.|+.....+... ++ +. ++|+|++||.++...
T Consensus 608 ~iLiLDEpTS~LD~~te~~i~~~-L~---~~--~~T~IiItHr~~~i~ 649 (686)
T TIGR03797 608 RILLFDEATSALDNRTQAIVSES-LE---RL--KVTRIVIAHRLSTIR 649 (686)
T ss_pred CEEEEeCCccCCCHHHHHHHHHH-HH---Hh--CCeEEEEecChHHHH
Confidence 99999999999999887766443 33 32 359999999998865
No 353
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.08 E-value=2.4e-09 Score=125.11 Aligned_cols=144 Identities=15% Similarity=0.138 Sum_probs=92.1
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH---------------------hh
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL---------------------SH 580 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l---------------------aq 580 (792)
.+.+++...-+ ..+..+.+|++++.+ |+.++|+|||||||||++|.+++..-. .+
T Consensus 322 ~i~~~~v~f~y---~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 398 (547)
T PRK10522 322 TLELRNVTFAY---QDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKL 398 (547)
T ss_pred eEEEEEEEEEe---CCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhh
Confidence 46666554322 013468899999988 999999999999999999999764311 12
Q ss_pred cCccccCCceee--ec------cc-------------ccch--hhc---cchhH-HHHHHHHHHHHhCCCCeEEEEeCCC
Q 043119 581 IGSFVPADAATV--GL------TD-------------SKHM--TAE---QSSFM-IDLHQVGMMLRQATSQSLCLLDEFG 633 (792)
Q Consensus 581 ~g~~vpa~~~~~--~~------~~-------------~~~~--~~~---~s~f~-~e~~~~~~~l~~~~~~slvllDE~~ 633 (792)
+ .+||.+..-+ .+ .+ .... ..+ -..++ +|.++++.+...+.+|+++|+|||+
T Consensus 399 i-~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~t 477 (547)
T PRK10522 399 F-SAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWA 477 (547)
T ss_pred e-EEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 2 2344432110 00 00 0000 000 12333 3455666555668999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 634 KGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 634 ~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+|.|+.....+...+.+.+.+. +.++|++||.++...
T Consensus 478 s~LD~~~~~~i~~~l~~~~~~~--~~tvi~itH~~~~~~ 514 (547)
T PRK10522 478 ADQDPHFRREFYQVLLPLLQEM--GKTIFAISHDDHYFI 514 (547)
T ss_pred CCCCHHHHHHHHHHHHHHHHhC--CCEEEEEEechHHHH
Confidence 9999988887765555444332 579999999987754
No 354
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.06 E-value=2.8e-09 Score=124.17 Aligned_cols=143 Identities=15% Similarity=0.124 Sum_probs=92.2
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH---------------------hh
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL---------------------SH 580 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l---------------------aq 580 (792)
.+.+++..--+-+ .++.+.++++++.+ |+.++|+|||||||||++|.+++..-. .+
T Consensus 320 ~i~~~~v~f~y~~--~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~ 397 (529)
T TIGR02857 320 SLEFSGLSVAYPG--RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ 397 (529)
T ss_pred eEEEEEEEEECCC--CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhh
Confidence 4666654332211 12468899999998 999999999999999999999754311 12
Q ss_pred cCccccCCcee----------eec--cc-------------cc-----------chhhccchhHH-HHHHHHHHHHhCCC
Q 043119 581 IGSFVPADAAT----------VGL--TD-------------SK-----------HMTAEQSSFMI-DLHQVGMMLRQATS 623 (792)
Q Consensus 581 ~g~~vpa~~~~----------~~~--~~-------------~~-----------~~~~~~s~f~~-e~~~~~~~l~~~~~ 623 (792)
+ .|||.+..- ++- .+ .+ .+..+-..+++ |.++++.+-....+
T Consensus 398 i-~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 398 I-AWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred e-EEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 2 245544321 000 00 00 00111223443 44556655566799
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 624 QSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 624 ~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|+++|+|||+++.|+.....+... +..+.. ++|+|++||.++...
T Consensus 477 ~~ililDE~ts~lD~~~~~~i~~~-l~~~~~---~~t~i~itH~~~~~~ 521 (529)
T TIGR02857 477 APLLLLDEPTAHLDAETEALVTEA-LRALAQ---GRTVLLVTHRLALAE 521 (529)
T ss_pred CCEEEEeCcccccCHHHHHHHHHH-HHHhcC---CCEEEEEecCHHHHH
Confidence 999999999999999988887544 444432 579999999998764
No 355
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.06 E-value=2.3e-09 Score=125.79 Aligned_cols=143 Identities=18% Similarity=0.148 Sum_probs=93.4
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH---------------------hh
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL---------------------SH 580 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l---------------------aq 580 (792)
.+.+++...-+-+ .+..+.+|++++.+ |+.++|+|||||||||++|.+++..-. .+
T Consensus 338 ~i~~~~v~f~y~~--~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 415 (574)
T PRK11160 338 SLTLNNVSFTYPD--QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQA 415 (574)
T ss_pred eEEEEEEEEECCC--CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhh
Confidence 4666665443311 12468899999998 999999999999999999999765311 11
Q ss_pred cCccccCCcee--------eec----cc-------------ccchh----------hccchhH-HHHHHHHHHHHhCCCC
Q 043119 581 IGSFVPADAAT--------VGL----TD-------------SKHMT----------AEQSSFM-IDLHQVGMMLRQATSQ 624 (792)
Q Consensus 581 ~g~~vpa~~~~--------~~~----~~-------------~~~~~----------~~~s~f~-~e~~~~~~~l~~~~~~ 624 (792)
+ .+||.+..- +.+ .+ .+.+. .+-..++ +|.++++.+-....++
T Consensus 416 i-~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~ 494 (574)
T PRK11160 416 I-SVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDA 494 (574)
T ss_pred e-eEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 2 345554321 000 00 00000 1112233 4556666666668999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 625 SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 625 slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+++|+|||+++.|+.....+.. .+..+.+ ++++|++||.++...
T Consensus 495 ~ililDE~ts~lD~~t~~~i~~-~l~~~~~---~~tviiitHr~~~~~ 538 (574)
T PRK11160 495 PLLLLDEPTEGLDAETERQILE-LLAEHAQ---NKTVLMITHRLTGLE 538 (574)
T ss_pred CEEEEeCCcccCCHHHHHHHHH-HHHHHcC---CCEEEEEecChhHHH
Confidence 9999999999999988887754 4444433 579999999998764
No 356
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.05 E-value=2.3e-09 Score=112.05 Aligned_cols=48 Identities=13% Similarity=0.048 Sum_probs=39.2
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 622 TSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 622 ~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+++++|+|||++|.|+.....+. .++..+.+. +.++|++||+.++..
T Consensus 176 ~~p~~lllDEPt~~LD~~~~~~l~-~~i~~~~~~--g~~vi~isH~~~~~~ 223 (247)
T cd03275 176 QPAPFFVLDEVDAALDNTNVGKVA-SYIREQAGP--NFQFIVISLKEEFFS 223 (247)
T ss_pred CCCCEEEEecccccCCHHHHHHHH-HHHHHhccC--CcEEEEEECCHHHHh
Confidence 358999999999999998888885 466666543 578999999988764
No 357
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.05 E-value=3.8e-09 Score=127.03 Aligned_cols=144 Identities=13% Similarity=0.130 Sum_probs=94.0
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhc
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------------------SHI 581 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------------------aq~ 581 (792)
.+.+++...-+-. .++.+.++++++.+ |+.++|+|||||||||++|.+++..-. .+.
T Consensus 455 ~i~~~~vsf~y~~--~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~ 532 (694)
T TIGR01846 455 AITFENIRFRYAP--DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQ 532 (694)
T ss_pred eEEEEEEEEEcCC--CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHh
Confidence 4666666543311 23468899999998 999999999999999999999765321 111
Q ss_pred CccccCCceee--------ecc----c-------------cc-----------chhhccchhH-HHHHHHHHHHHhCCCC
Q 043119 582 GSFVPADAATV--------GLT----D-------------SK-----------HMTAEQSSFM-IDLHQVGMMLRQATSQ 624 (792)
Q Consensus 582 g~~vpa~~~~~--------~~~----~-------------~~-----------~~~~~~s~f~-~e~~~~~~~l~~~~~~ 624 (792)
-+|||.+..-+ .+. + .+ .+..+-..++ +|.++++.+...+.+|
T Consensus 533 i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~ 612 (694)
T TIGR01846 533 MGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNP 612 (694)
T ss_pred CeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 23566553210 000 0 00 0111122344 3445566555567999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 625 SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 625 slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+++|+|||++|.|+.....+.. .+..+.. ++|+|++||.++...
T Consensus 613 ~ililDEpts~LD~~~~~~i~~-~l~~~~~---~~t~i~itH~~~~~~ 656 (694)
T TIGR01846 613 RILIFDEATSALDYESEALIMR-NMREICR---GRTVIIIAHRLSTVR 656 (694)
T ss_pred CEEEEECCCcCCCHHHHHHHHH-HHHHHhC---CCEEEEEeCChHHHH
Confidence 9999999999999988877754 4444432 579999999998764
No 358
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.05 E-value=3e-09 Score=128.33 Aligned_cols=141 Identities=13% Similarity=0.116 Sum_probs=92.3
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH---------------------Hhh
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF---------------------LSH 580 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~---------------------laq 580 (792)
.|.+++...-+- ..+..+.+|++++.+ |+.++|+|||||||||++|.+++..- -.+
T Consensus 477 ~I~~~~vsf~y~--~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 554 (710)
T TIGR03796 477 YVELRNITFGYS--PLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANS 554 (710)
T ss_pred eEEEEEEEEecC--CCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhh
Confidence 466665543331 123568999999998 99999999999999999999976531 112
Q ss_pred cCccccCCcee--------eecc----c-------------cc-----------chhhccchhH-HHHHHHHHHHHhCCC
Q 043119 581 IGSFVPADAAT--------VGLT----D-------------SK-----------HMTAEQSSFM-IDLHQVGMMLRQATS 623 (792)
Q Consensus 581 ~g~~vpa~~~~--------~~~~----~-------------~~-----------~~~~~~s~f~-~e~~~~~~~l~~~~~ 623 (792)
+ +|||.+..- +.+. + .+ .+..+-..++ +|.++++.+-....+
T Consensus 555 i-~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~ 633 (710)
T TIGR03796 555 V-AMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRN 633 (710)
T ss_pred e-eEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhC
Confidence 2 356655321 1111 0 00 0111112233 455666655566899
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 624 QSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 624 ~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|+++|||||++++|+.....+... +.+. ++|+|++||.++.+.
T Consensus 634 p~iliLDEptS~LD~~te~~i~~~----l~~~--~~T~IiitHrl~~i~ 676 (710)
T TIGR03796 634 PSILILDEATSALDPETEKIIDDN----LRRR--GCTCIIVAHRLSTIR 676 (710)
T ss_pred CCEEEEECccccCCHHHHHHHHHH----HHhc--CCEEEEEecCHHHHH
Confidence 999999999999999887766543 3333 579999999998865
No 359
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.05 E-value=1.8e-09 Score=125.84 Aligned_cols=138 Identities=18% Similarity=0.147 Sum_probs=90.1
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhc
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------------------SHI 581 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------------------aq~ 581 (792)
.+.+++...-+- .++.+.+|++++.+ |+.++|+||+||||||++|.+++..-. .++
T Consensus 334 ~I~~~~vsf~Y~---~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i 410 (529)
T TIGR02868 334 TLELRDLSFGYP---GSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRI 410 (529)
T ss_pred eEEEEEEEEecC---CCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhhe
Confidence 466666554431 12358999999998 999999999999999999998754311 122
Q ss_pred CccccCCceee--------ecc----c-------------cc---ch--------hhccchhH-HHHHHHHHHHHhCCCC
Q 043119 582 GSFVPADAATV--------GLT----D-------------SK---HM--------TAEQSSFM-IDLHQVGMMLRQATSQ 624 (792)
Q Consensus 582 g~~vpa~~~~~--------~~~----~-------------~~---~~--------~~~~s~f~-~e~~~~~~~l~~~~~~ 624 (792)
.|||.+..-+ .+. + .+ .+ ..+-..++ +|.+|++.+-....++
T Consensus 411 -~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~ 489 (529)
T TIGR02868 411 -SVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADA 489 (529)
T ss_pred -EEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCC
Confidence 3566653211 010 0 00 00 01112233 4566666666668999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccCh
Q 043119 625 SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLT 668 (792)
Q Consensus 625 slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~ 668 (792)
+++|+|||+++.|+.....+...+ +.+.+ ++|+|++||.+
T Consensus 490 ~iliLDE~TSaLD~~te~~I~~~l-~~~~~---~~TvIiItHrl 529 (529)
T TIGR02868 490 PILLLDEPTEHLDAGTESELLEDL-LAALS---GKTVVVITHHL 529 (529)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHH-HHhcC---CCEEEEEecCC
Confidence 999999999999998877775443 33322 57999999963
No 360
>PLN03140 ABC transporter G family member; Provisional
Probab=99.04 E-value=6.5e-10 Score=141.10 Aligned_cols=128 Identities=12% Similarity=0.129 Sum_probs=86.9
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH----hh---------------cCccccCCceeeec-----
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL----SH---------------IGSFVPADAATVGL----- 594 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l----aq---------------~g~~vpa~~~~~~~----- 594 (792)
..+.+|+++... |++++|+|||||||||||+.+++..-- +. .-.|||......+.
T Consensus 893 ~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E 972 (1470)
T PLN03140 893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRE 972 (1470)
T ss_pred ceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHH
Confidence 368889999988 999999999999999999999875310 00 01233333211100
Q ss_pred -------------cc-cc-------c-----h----hh-----ccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCH
Q 043119 595 -------------TD-SK-------H-----M----TA-----EQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLT 638 (792)
Q Consensus 595 -------------~~-~~-------~-----~----~~-----~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~ 638 (792)
.+ .+ . + .. +...++. |.++++.+...+.+|++++||||++|+|+
T Consensus 973 ~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~ 1052 (1470)
T PLN03140 973 SLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1052 (1470)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Confidence 00 00 0 0 00 0123444 44566666677899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEccChhh
Q 043119 639 EDGIGLLGGTINYFVTCDVPPKVLVCTHLTEL 670 (792)
Q Consensus 639 ~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l 670 (792)
..+..+. .+++.+++. +.++|++||+++.
T Consensus 1053 ~~a~~v~-~~L~~l~~~--g~tVI~t~Hq~~~ 1081 (1470)
T PLN03140 1053 RAAAIVM-RTVRNTVDT--GRTVVCTIHQPSI 1081 (1470)
T ss_pred HHHHHHH-HHHHHHHHC--CCEEEEEeCCCCH
Confidence 8888885 577777765 6799999999863
No 361
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.04 E-value=1.4e-09 Score=127.06 Aligned_cols=147 Identities=12% Similarity=0.120 Sum_probs=93.4
Q ss_pred cEEEecccceeeecc-cCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH---------------------h
Q 043119 523 LLDIQNGRHVLQEMT-VDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL---------------------S 579 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~-~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l---------------------a 579 (792)
.+.+++...-+-+.. .+.++.++++++.+ |+.++|+|||||||||+++.++...-. .
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~ 416 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRD 416 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence 466665543331100 02368899999988 999999999999999999998754311 1
Q ss_pred hcCccccCCcee----ee----c-cc-------------cc---chhhc---cchhH-HHHHHHHHHHHhCCCCeEEEEe
Q 043119 580 HIGSFVPADAAT----VG----L-TD-------------SK---HMTAE---QSSFM-IDLHQVGMMLRQATSQSLCLLD 630 (792)
Q Consensus 580 q~g~~vpa~~~~----~~----~-~~-------------~~---~~~~~---~s~f~-~e~~~~~~~l~~~~~~slvllD 630 (792)
++| +||.+..- +. . .+ .+ ....+ ...++ +|.++++.+.....+++++|+|
T Consensus 417 ~i~-~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililD 495 (555)
T TIGR01194 417 LFS-AIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFD 495 (555)
T ss_pred hCc-EEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 121 34433210 00 0 00 00 01111 12343 3555666666668999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 631 EFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 631 E~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
||+++.|+.....+...+++.+... +.|+|++||.++..+
T Consensus 496 E~ts~LD~~~~~~i~~~l~~~~~~~--~~tiiiisH~~~~~~ 535 (555)
T TIGR01194 496 EWAADQDPAFKRFFYEELLPDLKRQ--GKTIIIISHDDQYFE 535 (555)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhC--CCEEEEEeccHHHHH
Confidence 9999999988888866666555443 579999999988654
No 362
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.03 E-value=1.7e-09 Score=121.00 Aligned_cols=131 Identities=20% Similarity=0.149 Sum_probs=87.8
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh----------------------------hcCccccCCcee
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS----------------------------HIGSFVPADAAT 591 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la----------------------------q~g~~vpa~~~~ 591 (792)
.+.+|++|+.. |++++|+|..||||||+.+++.++.-.. .--++||.+.+.
T Consensus 23 ~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~ 102 (539)
T COG1123 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMT 102 (539)
T ss_pred eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchh
Confidence 56789999998 9999999999999999999886543211 000122222111
Q ss_pred -e------------------------------------ecccccchhhccchhHHHHHH-HHHHHHhCCCCeEEEEeCCC
Q 043119 592 -V------------------------------------GLTDSKHMTAEQSSFMIDLHQ-VGMMLRQATSQSLCLLDEFG 633 (792)
Q Consensus 592 -~------------------------------------~~~~~~~~~~~~s~f~~e~~~-~~~~l~~~~~~slvllDE~~ 633 (792)
+ ++-+......---.|+++|+| +..+.+.+.+|+|+|+|||+
T Consensus 103 slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPT 182 (539)
T COG1123 103 SLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPT 182 (539)
T ss_pred hcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCc
Confidence 0 000000000001124455544 44555668999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 634 KGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 634 ~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
.++|+.....|. .+++.+.++ .+..+||+|||++++..
T Consensus 183 TaLDvt~q~qIL-~llk~l~~e-~g~a~l~ITHDl~Vva~ 220 (539)
T COG1123 183 TALDVTTQAQIL-DLLKDLQRE-LGMAVLFITHDLGVVAE 220 (539)
T ss_pred cccCHHHHHHHH-HHHHHHHHH-cCcEEEEEcCCHHHHHH
Confidence 999999999986 477777754 37899999999999864
No 363
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.03 E-value=2e-09 Score=112.32 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=36.7
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 622 TSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 622 ~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+++++|+|||++|+|+.....+. ..+..+.+ +.++|++||..++..
T Consensus 179 ~~~~illlDEp~~~ld~~~~~~~~-~~l~~~~~---~~~ii~~~h~~~~~~ 225 (243)
T cd03272 179 DPAPFYLFDEIDAALDAQYRTAVA-NMIKELSD---GAQFITTTFRPELLE 225 (243)
T ss_pred CCCCEEEEECCccCCCHHHHHHHH-HHHHHHhC---CCEEEEEecCHHHHh
Confidence 468999999999999998888774 45555543 467889999877653
No 364
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.03 E-value=3.2e-09 Score=110.70 Aligned_cols=65 Identities=18% Similarity=0.229 Sum_probs=47.3
Q ss_pred chhHHHH-HHHHHHHHhCC---CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 605 SSFMIDL-HQVGMMLRQAT---SQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 605 s~f~~e~-~~~~~~l~~~~---~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
++++.++ ++++.+...+. +++++|+|||++|+|+.+...+. .+++.+.+. +.++|++||+++.+.
T Consensus 168 ~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~-~~L~~l~~~--g~tvIiitH~~~~i~ 236 (261)
T cd03271 168 TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLL-EVLQRLVDK--GNTVVVIEHNLDVIK 236 (261)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHH-HHHHHHHhC--CCEEEEEeCCHHHHH
Confidence 3444444 33443333344 37999999999999999988885 567777764 579999999998875
No 365
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.02 E-value=2.4e-09 Score=99.24 Aligned_cols=127 Identities=20% Similarity=0.188 Sum_probs=85.7
Q ss_pred eccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhc----------CccccCCcee------eeccc--------
Q 043119 542 IPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHI----------GSFVPADAAT------VGLTD-------- 596 (792)
Q Consensus 542 v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~----------g~~vpa~~~~------~~~~~-------- 596 (792)
+.-||.++.+ |..+++.||.|+||||++|.+-++-..... -+..|++++. +|.+-
T Consensus 17 ~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwph 96 (242)
T COG4161 17 ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPH 96 (242)
T ss_pred heeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCch
Confidence 3458999988 999999999999999999988766533210 0123333221 11110
Q ss_pred -----------------c---------------------cchhhccchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCH
Q 043119 597 -----------------S---------------------KHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLT 638 (792)
Q Consensus 597 -----------------~---------------------~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~ 638 (792)
+ +...-.+|. +..++.+.+-+.+.+|.++++|||+...||
T Consensus 97 ltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsg--gqqqrvaiaralmmkpqvllfdeptaaldp 174 (242)
T COG4161 97 LTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSG--GQQQRVAIARALMMEPQVLLFDEPTAALDP 174 (242)
T ss_pred hHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceeccc--chhhhHHHHHHHhcCCcEEeecCcccccCH
Confidence 0 000001222 233444444455789999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 639 EDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 639 ~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
.--..+ ..+++.|.+. |.+-+++||..+.+..
T Consensus 175 eitaqv-v~iikel~~t--gitqvivthev~va~k 206 (242)
T COG4161 175 EITAQI-VSIIKELAET--GITQVIVTHEVEVARK 206 (242)
T ss_pred HHHHHH-HHHHHHHHhc--CceEEEEEeehhHHHh
Confidence 877776 5689999886 6789999999999864
No 366
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.02 E-value=2.2e-09 Score=109.19 Aligned_cols=65 Identities=12% Similarity=0.033 Sum_probs=44.9
Q ss_pred chhHHHHHHHHHHHH-----hCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhh
Q 043119 605 SSFMIDLHQVGMMLR-----QATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTEL 670 (792)
Q Consensus 605 s~f~~e~~~~~~~l~-----~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l 670 (792)
.+++.+++++..+.. .+.+++++|+|||++|+|+.....+. ..+..+.+...+.++|++||++..
T Consensus 125 ~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~-~~l~~~~~~~g~~~viiith~~~~ 194 (213)
T cd03277 125 HHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVF-DMLVETACKEGTSQYFLITPKLLP 194 (213)
T ss_pred hhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHH-HHHHHHhhcCCCceEEEEchhhcc
Confidence 345556666544332 25789999999999999999888885 455555543113468999998644
No 367
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.01 E-value=9.5e-10 Score=140.00 Aligned_cols=128 Identities=15% Similarity=0.183 Sum_probs=86.8
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH---H--hhc---C-----------ccccCCceeeecc----
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF---L--SHI---G-----------SFVPADAATVGLT---- 595 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~---l--aq~---g-----------~~vpa~~~~~~~~---- 595 (792)
+.+.+++++... |++++|+|||||||||||+.+++..- . +++ | .|||.+...++..
T Consensus 776 ~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E 855 (1394)
T TIGR00956 776 RVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRE 855 (1394)
T ss_pred cEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHH
Confidence 568899999988 99999999999999999999987642 1 110 1 2444432111000
Q ss_pred --------------c-cc----------------chhhccc----hhHH-HHHHHHHHHHhCCCCe-EEEEeCCCCCCCH
Q 043119 596 --------------D-SK----------------HMTAEQS----SFMI-DLHQVGMMLRQATSQS-LCLLDEFGKGTLT 638 (792)
Q Consensus 596 --------------~-~~----------------~~~~~~s----~f~~-e~~~~~~~l~~~~~~s-lvllDE~~~gt~~ 638 (792)
+ .+ ......+ .++. |.++++.+...+.+|+ +++||||++|+|+
T Consensus 856 ~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~ 935 (1394)
T TIGR00956 856 SLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDS 935 (1394)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCH
Confidence 0 00 0000011 3444 4455666666778885 9999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEccChhh
Q 043119 639 EDGIGLLGGTINYFVTCDVPPKVLVCTHLTEL 670 (792)
Q Consensus 639 ~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l 670 (792)
.....+. .+++.+++. +.++|++||+++.
T Consensus 936 ~~~~~i~-~~L~~la~~--g~tvI~t~H~~~~ 964 (1394)
T TIGR00956 936 QTAWSIC-KLMRKLADH--GQAILCTIHQPSA 964 (1394)
T ss_pred HHHHHHH-HHHHHHHHc--CCEEEEEecCCCH
Confidence 8888885 577777664 6799999999874
No 368
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.01 E-value=6.1e-09 Score=125.55 Aligned_cols=141 Identities=16% Similarity=0.147 Sum_probs=92.0
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH---------------------hh
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL---------------------SH 580 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l---------------------aq 580 (792)
.|.+++...-+ . .+..+.+|++++.+ |+.++|+|||||||||++|.+++..-. .+
T Consensus 473 ~I~~~~vsf~y-~--~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 549 (708)
T TIGR01193 473 DIVINDVSYSY-G--YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQF 549 (708)
T ss_pred cEEEEEEEEEc-C--CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHh
Confidence 46666554333 1 23468899999998 999999999999999999999765311 12
Q ss_pred cCccccCCcee----------ee---ccc-c------------c-----------chhhccchhH-HHHHHHHHHHHhCC
Q 043119 581 IGSFVPADAAT----------VG---LTD-S------------K-----------HMTAEQSSFM-IDLHQVGMMLRQAT 622 (792)
Q Consensus 581 ~g~~vpa~~~~----------~~---~~~-~------------~-----------~~~~~~s~f~-~e~~~~~~~l~~~~ 622 (792)
+ .|||.+..- ++ -.+ . + .+..+-..++ +|.++++.+-....
T Consensus 550 i-~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~ 628 (708)
T TIGR01193 550 I-NYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT 628 (708)
T ss_pred e-EEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh
Confidence 2 356655321 11 001 0 0 0111112333 34555665555679
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 623 SQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 623 ~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+|+++|+|||+++.|+.....+...+ ..+ + ++|+|++||.++...
T Consensus 629 ~p~iliLDE~Ts~LD~~te~~i~~~L-~~~--~--~~T~IiitHr~~~~~ 673 (708)
T TIGR01193 629 DSKVLILDESTSNLDTITEKKIVNNL-LNL--Q--DKTIIFVAHRLSVAK 673 (708)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHH-HHh--c--CCEEEEEecchHHHH
Confidence 99999999999999998777765444 333 2 469999999998765
No 369
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.00 E-value=1.4e-08 Score=110.50 Aligned_cols=131 Identities=20% Similarity=0.168 Sum_probs=89.5
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH--------------------HhhcCccccCCce-------
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF--------------------LSHIGSFVPADAA------- 590 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~--------------------laq~g~~vpa~~~------- 590 (792)
++.+.++++|... |+.++|+||.||||||+.|.+.++-. ++..-.|.|.+=.
T Consensus 348 ~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIa 427 (580)
T COG4618 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIA 427 (580)
T ss_pred CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHH
Confidence 5789999999998 99999999999999999999866542 2222235665411
Q ss_pred ----eee-ccc------------------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHH
Q 043119 591 ----TVG-LTD------------------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTED 640 (792)
Q Consensus 591 ----~~~-~~~------------------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~ 640 (792)
+++ -.| .-.+..+-++.+++. ++++-+-....+|-||+||||-+++|..-
T Consensus 428 eNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~G 507 (580)
T COG4618 428 ENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEG 507 (580)
T ss_pred HHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhH
Confidence 111 011 001222334555444 55555555579999999999999999854
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 641 GIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 641 ~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
-.+++. .+..+..+ +++++++||-+.+..
T Consensus 508 E~AL~~-Ai~~~k~r--G~~vvviaHRPs~L~ 536 (580)
T COG4618 508 EAALAA-AILAAKAR--GGTVVVIAHRPSALA 536 (580)
T ss_pred HHHHHH-HHHHHHHc--CCEEEEEecCHHHHh
Confidence 455544 55566665 789999999999875
No 370
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.99 E-value=5.1e-09 Score=125.87 Aligned_cols=143 Identities=17% Similarity=0.147 Sum_probs=89.6
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhc
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------------------SHI 581 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------------------aq~ 581 (792)
.+.+++..--+= ...+..+.+|++++.+ |+.++|+|||||||||++|.+++..-. .+.
T Consensus 478 ~I~~~nVsf~Y~-~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 556 (711)
T TIGR00958 478 LIEFQDVSFSYP-NRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ 556 (711)
T ss_pred eEEEEEEEEECC-CCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhh
Confidence 466665532220 1123578999999998 999999999999999999999765421 111
Q ss_pred CccccCCcee----------eeccc---------------cc-----------chhhccchhH-HHHHHHHHHHHhCCCC
Q 043119 582 GSFVPADAAT----------VGLTD---------------SK-----------HMTAEQSSFM-IDLHQVGMMLRQATSQ 624 (792)
Q Consensus 582 g~~vpa~~~~----------~~~~~---------------~~-----------~~~~~~s~f~-~e~~~~~~~l~~~~~~ 624 (792)
-.+||.+..- ++.-+ .+ .+..+-..++ +|.++++.+-....++
T Consensus 557 i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p 636 (711)
T TIGR00958 557 VALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKP 636 (711)
T ss_pred ceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 2345554321 11000 00 0011112233 4556666666667999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 625 SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 625 slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+++|+|||+++.|+.....+.. .... .++|+|++||.++...
T Consensus 637 ~ILILDEpTSaLD~~te~~i~~-----~~~~-~~~TvIiItHrl~~i~ 678 (711)
T TIGR00958 637 RVLILDEATSALDAECEQLLQE-----SRSR-ASRTVLLIAHRLSTVE 678 (711)
T ss_pred CEEEEEccccccCHHHHHHHHH-----hhcc-CCCeEEEEeccHHHHH
Confidence 9999999999999966554432 2222 2579999999998765
No 371
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=1e-09 Score=119.17 Aligned_cols=123 Identities=21% Similarity=0.246 Sum_probs=78.4
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhc----------CccccCCceee----eccc----c--
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHI----------GSFVPADAATV----GLTD----S-- 597 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~----------g~~vpa~~~~~----~~~~----~-- 597 (792)
.+...|..++... |+=++|+||||+|||||||+|+- +|+ |+++|+..... ...| .
T Consensus 92 ~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~----~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~ 167 (582)
T KOG0062|consen 92 GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN----GQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKE 167 (582)
T ss_pred chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh----cCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhh
Confidence 4556667777766 89999999999999999999986 443 44444432211 0111 0
Q ss_pred ---c----chh----hccchhHHHHH-------------HHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 043119 598 ---K----HMT----AEQSSFMIDLH-------------QVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFV 653 (792)
Q Consensus 598 ---~----~~~----~~~s~f~~e~~-------------~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~ 653 (792)
. .+. .+. .|..||+ +++.+-+...+|+|+|||||++-+|. .+++| +-+||.
T Consensus 168 l~~~~~l~ei~~~~L~gl-GFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv---~av~W-Le~yL~ 242 (582)
T KOG0062|consen 168 LLAGLTLEEIYDKILAGL-GFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDV---VAVAW-LENYLQ 242 (582)
T ss_pred hhccchHHHHHHHHHHhC-CCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchh---HHHHH-HHHHHh
Confidence 0 000 011 2444443 23333333589999999998766554 56666 567777
Q ss_pred hCCCCcEEEEEccChhhhh
Q 043119 654 TCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 654 ~~~~~~~~l~~TH~~~l~~ 672 (792)
.. +.|+|+++||-..++
T Consensus 243 t~--~~T~liVSHDr~FLn 259 (582)
T KOG0062|consen 243 TW--KITSLIVSHDRNFLN 259 (582)
T ss_pred hC--CceEEEEeccHHHHH
Confidence 64 469999999987764
No 372
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.97 E-value=9.3e-10 Score=120.24 Aligned_cols=126 Identities=19% Similarity=0.144 Sum_probs=81.1
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeeccc-----------------------
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD----------------------- 596 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~----------------------- 596 (792)
.+-++++|+.+ +.-+.++||||+||||+||.+.+-. .-..|.-.|.....++.+.
T Consensus 404 ~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl-~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~ 482 (614)
T KOG0927|consen 404 MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDL-QPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPD 482 (614)
T ss_pred hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcc-ccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccc
Confidence 36677778877 7788999999999999999875432 1223332332222222111
Q ss_pred -----------------ccchhhccchhHHHHH-HHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Q 043119 597 -----------------SKHMTAEQSSFMIDLH-QVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVP 658 (792)
Q Consensus 597 -----------------~~~~~~~~s~f~~e~~-~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~ 658 (792)
.+......|+.+.+++ ++..+....+.|.+++|||||+|.|...-.+++.+ +.+. .
T Consensus 483 ~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laea----iNe~--~ 556 (614)
T KOG0927|consen 483 EKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEA----INEF--P 556 (614)
T ss_pred cchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHH----Hhcc--C
Confidence 0111222455555554 44555555699999999999999999877776543 3343 2
Q ss_pred cEEEEEccChhhhhc
Q 043119 659 PKVLVCTHLTELLNE 673 (792)
Q Consensus 659 ~~~l~~TH~~~l~~~ 673 (792)
.+++++||+..++..
T Consensus 557 Ggvv~vSHDfrlI~q 571 (614)
T KOG0927|consen 557 GGVVLVSHDFRLISQ 571 (614)
T ss_pred CceeeeechhhHHHH
Confidence 368999999998763
No 373
>PF05188 MutS_II: MutS domain II; InterPro: IPR007860 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the connector domain (domain 2) found in proteins of the MutS family. The structure of the MutS connector domain consists of a parallel beta-sheet surrounded by four alpha helices, which is similar to the structure of the Holliday junction resolvase ruvC.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 2WTU_A ....
Probab=98.96 E-value=9e-09 Score=97.16 Aligned_cols=123 Identities=24% Similarity=0.282 Sum_probs=75.6
Q ss_pred eEEEEE-E--cCCeEEEEEEEcccccEEEEEEeCCCCCCccHHHHHhhcCCc-eEEeCCCCChhHHHHHhhhcCCCCCCc
Q 043119 3 VYMACI-L--HGHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQP-QIIYTSTKSEESFLSALKRSDGTTEAP 78 (792)
Q Consensus 3 v~l~~i-~--~~~~iGiA~~D~stg~l~i~e~~d~~~~~~~~~~~~~~q~~P-~iIi~~~~~~~~~~~~l~~~~~~~~~~ 78 (792)
+|||+| . .++.+|+||+|++||+|+++++.| +......+.++ +| ++|+.++..+............ ...
T Consensus 1 Nyl~aI~~~~~~~~~gla~~D~sTGe~~~~~~~d---~~~L~~~L~~~--~P~EIi~~~~~~~~~~~~~~~~~~~--~~~ 73 (137)
T PF05188_consen 1 NYLAAIYEKNDEDSYGLAYIDLSTGEFYVTEFED---YSELKSELARL--SPREIIIPEGFSSSDISALLSSLKN--SFF 73 (137)
T ss_dssp -EEEEEEEETCSSEEEEEEEETTTTEEEEEEEEC---HHHHHHHHHHH---ESEEEEETTCSHHHHHHHHHCCTT--TCC
T ss_pred CEEEEEEEecCCCEEEEEEEECCCCEEEEEEeCC---HHHHHHHHHhc--CCeEEEEcCCCcccccchhhhhhcc--ccc
Confidence 477777 4 478899999999999999999986 22233334544 56 5666555543322111111111 122
Q ss_pred eeeeccCCCCCHHHHHHHHH-hhhcccCCCCCchhhHHhhhhccccCCchHHHHHHHHHHHHHhhcc
Q 043119 79 TVKLVKSSIFSYEQAWHRLI-YLRVTGMDDGLSIKERICYLNSMMDMGSEVQVRASGGLLAVLENER 144 (792)
Q Consensus 79 ~v~~~~~~~F~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~l~s~~~~~~~~~i~Algall~yl~~~~ 144 (792)
.++..+...|+.+.+...+. .+..... ++.+. ...+..+++|+|++++||+.++
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~-----------~~~~~~~~~Al~all~Yl~~t~ 128 (137)
T PF05188_consen 74 KVTETPSWYFDSEFASEDIEEQFGVADL-DGFGL-----------EEDKELALSALGALLKYLEETQ 128 (137)
T ss_dssp EEEEETCGGGSHHHHHHHHHHHCTSSST-CCCTT-----------GGGGHHHHHHHHHHHHHHHHTT
T ss_pred eeeecchhhhhhHHHHHHHHHhhccccc-cccCc-----------cCCCHHHHHHHHHHHHHHHHHC
Confidence 45666777888888877776 4433322 23222 1245789999999999998764
No 374
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.95 E-value=2.4e-09 Score=109.32 Aligned_cols=130 Identities=12% Similarity=0.054 Sum_probs=86.6
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccc--------cCCce---------eeecccccchhh
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFV--------PADAA---------TVGLTDSKHMTA 602 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~v--------pa~~~---------~~~~~~~~~~~~ 602 (792)
...+||+|+.. |++++|+|.+||||||+-|++..+.-....-.+. ..+.. .+++- .+...+
T Consensus 27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~-~~~~~r 105 (268)
T COG4608 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLP-EEFLYR 105 (268)
T ss_pred EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCC-HHHhhc
Confidence 56789999998 9999999999999999999886554211100000 00000 01100 111111
Q ss_pred ccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 603 EQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 603 ~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
--..|++ +.+++..+-+.+.+|++++.|||.+.+|.-....+. .++..+.+. .+.+.+|+|||+..+..
T Consensus 106 yPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIl-nLL~dlq~~-~~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 106 YPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQIL-NLLKDLQEE-LGLTYLFISHDLSVVRY 175 (268)
T ss_pred CCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHH-HHHHHHHHH-hCCeEEEEEEEHHhhhh
Confidence 1223333 345555555558999999999999999998887775 577888765 37899999999999863
No 375
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=98.94 E-value=5.3e-09 Score=112.41 Aligned_cols=153 Identities=16% Similarity=0.170 Sum_probs=104.7
Q ss_pred CCCCCceecCCCcEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHH---------------
Q 043119 511 NNYMRPILTLEPLLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVAL--------------- 574 (792)
Q Consensus 511 ~~~~~P~~~~~~~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~--------------- 574 (792)
.+.+-|--...+.+.+++....+ ..++.|..|++|... |+.++++||.||||||.||.+--
T Consensus 525 ~P~a~pl~~~~G~i~fsnvtF~Y---~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqd 601 (790)
T KOG0056|consen 525 LPGAPPLKVTQGKIEFSNVTFAY---DPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQD 601 (790)
T ss_pred CCCCCCccccCCeEEEEEeEEec---CCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCch
Confidence 35566665555666666654433 356889999999998 99999999999999999996631
Q ss_pred ------HHHHhhcCccccCCceee-------------eccc------------------------ccchhhccchhHHHH
Q 043119 575 ------IVFLSHIGSFVPADAATV-------------GLTD------------------------SKHMTAEQSSFMIDL 611 (792)
Q Consensus 575 ------~~~laq~g~~vpa~~~~~-------------~~~~------------------------~~~~~~~~s~f~~e~ 611 (792)
...-.++| -||.+..-+ +..| ++.-.+|+.--.+|.
T Consensus 602 Irnvt~~SLRs~IG-VVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEK 680 (790)
T KOG0056|consen 602 IRNVTQSSLRSSIG-VVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEK 680 (790)
T ss_pred HHHHHHHHHHHhcC-cccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcch
Confidence 22345677 478764311 1111 111122222223567
Q ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhh
Q 043119 612 HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELL 671 (792)
Q Consensus 612 ~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~ 671 (792)
++.+.+-.-...|+++++||.++..|+..-.+| .+.++.++.. .|.|++-|-+...
T Consensus 681 QRVAiARtiLK~P~iIlLDEATSALDT~tER~I-QaaL~rlca~---RTtIVvAHRLSTi 736 (790)
T KOG0056|consen 681 QRVAIARTILKAPSIILLDEATSALDTNTERAI-QAALARLCAN---RTTIVVAHRLSTI 736 (790)
T ss_pred hhHHHHHHHhcCCcEEEEcchhhhcCCccHHHH-HHHHHHHhcC---CceEEEeeeehhe
Confidence 777766666799999999999999999888888 5677788763 4678888876653
No 376
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.94 E-value=2.1e-08 Score=105.74 Aligned_cols=143 Identities=16% Similarity=0.180 Sum_probs=101.8
Q ss_pred CcEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh-----cCccccCCcee----
Q 043119 522 PLLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH-----IGSFVPADAAT---- 591 (792)
Q Consensus 522 ~~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq-----~g~~vpa~~~~---- 591 (792)
..+++++.|..+.+ ..|-.+.|+++.. |+++.|+|.||||||||++.+.++.-.-. -|-+|.++.-.
T Consensus 321 ~~lelrnvrfay~~---~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~ 397 (546)
T COG4615 321 KTLELRNVRFAYQD---NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRK 397 (546)
T ss_pred cceeeeeeeeccCc---ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHH
Confidence 46888888877753 3477888888888 99999999999999999997755432211 23344444311
Q ss_pred --------eeccc----cc---------------------------chhhccchhHHHHHHHHHHHHhCCCCeEEEEeCC
Q 043119 592 --------VGLTD----SK---------------------------HMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEF 632 (792)
Q Consensus 592 --------~~~~~----~~---------------------------~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~ 632 (792)
+.++| .+ .....+|| ++.++++.+++...+++++++||.
T Consensus 398 LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLSt--GQkKRlAll~AllEeR~Ilv~DEW 475 (546)
T COG4615 398 LFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLST--GQKKRLALLLALLEERDILVLDEW 475 (546)
T ss_pred HHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCccccccccc--chHHHHHHHHHHHhhCCeEEeehh
Confidence 11222 00 00011333 466889999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhh
Q 043119 633 GKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELL 671 (792)
Q Consensus 633 ~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~ 671 (792)
.+.-||.-+...-...+-.+.+. |+|++.+|||..-.
T Consensus 476 AADQDPaFRR~FY~~lLp~LK~q--GKTI~aIsHDd~YF 512 (546)
T COG4615 476 AADQDPAFRREFYQVLLPLLKEQ--GKTIFAISHDDHYF 512 (546)
T ss_pred hccCChHHHHHHHHHHhHHHHHh--CCeEEEEecCchhh
Confidence 99999999988877777777775 67999999996543
No 377
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.94 E-value=2.5e-09 Score=137.40 Aligned_cols=129 Identities=17% Similarity=0.161 Sum_probs=87.8
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------hcCccccCCcee----------eec-cc---
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------HIGSFVPADAAT----------VGL-TD--- 596 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------q~g~~vpa~~~~----------~~~-~~--- 596 (792)
..+.+|++++.+ |++++|+|||||||||||+++++..-.. .+ .|||.+..- ++. .+
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~i-ayv~Q~~~l~~~Ti~eNI~~g~~~~~~~ 517 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRI-SFSPQTSWIMPGTIKDNIIFGLSYDEYR 517 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE-EEEeCCCccCCccHHHHHHhccccchHH
Confidence 357889999998 9999999999999999999998764221 11 245443211 010 11
Q ss_pred ----------ccc-----------hhhccchhHHHHH-HHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 043119 597 ----------SKH-----------MTAEQSSFMIDLH-QVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVT 654 (792)
Q Consensus 597 ----------~~~-----------~~~~~s~f~~e~~-~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~ 654 (792)
.+. +...-.+++++++ +++.+.+...+++++|||||++|.|+..+..+...++..+.+
T Consensus 518 ~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~ 597 (1490)
T TIGR01271 518 YTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMS 597 (1490)
T ss_pred HHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc
Confidence 000 0111234555544 444444556899999999999999999999987655555543
Q ss_pred CCCCcEEEEEccChhhhh
Q 043119 655 CDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 655 ~~~~~~~l~~TH~~~l~~ 672 (792)
++++|++||+++.+.
T Consensus 598 ---~~tvilvtH~~~~~~ 612 (1490)
T TIGR01271 598 ---NKTRILVTSKLEHLK 612 (1490)
T ss_pred ---CCeEEEEeCChHHHH
Confidence 579999999998764
No 378
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.92 E-value=2.6e-09 Score=107.84 Aligned_cols=126 Identities=17% Similarity=0.164 Sum_probs=92.1
Q ss_pred ceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------------hhcCccccCCceeeeccc--c---------c
Q 043119 545 DTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------------SHIGSFVPADAATVGLTD--S---------K 598 (792)
Q Consensus 545 ~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------------aq~g~~vpa~~~~~~~~~--~---------~ 598 (792)
++++..+ ..++.|.|+.||||||++++|+++.-. +.-|.++|..+-++|++- . .
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 5666666 489999999999999999999988632 345788898887776654 0 0
Q ss_pred ch-------------------------hhccchhH-HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 043119 599 HM-------------------------TAEQSSFM-IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYF 652 (792)
Q Consensus 599 ~~-------------------------~~~~s~f~-~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l 652 (792)
++ .+.-++.+ +|.++.+.--+..+.|.|+|||||.+.+|......|. -.+|.|
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Eil-pylERL 174 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREIL-PYLERL 174 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHH-HHHHHH
Confidence 00 11122333 4666666656668999999999999999998887775 578888
Q ss_pred HhCCCCcEEEEEccChhhhh
Q 043119 653 VTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 653 ~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+.. ..-++++||-++.+.
T Consensus 175 ~~e~-~IPIlYVSHS~~Ev~ 193 (352)
T COG4148 175 RDEI-NIPILYVSHSLDEVL 193 (352)
T ss_pred HHhc-CCCEEEEecCHHHHH
Confidence 8753 345899999986643
No 379
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.91 E-value=4.1e-09 Score=123.33 Aligned_cols=126 Identities=18% Similarity=0.194 Sum_probs=94.5
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hcCccccCCceeeeccc-
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------------------HIGSFVPADAATVGLTD- 596 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------------------q~g~~vpa~~~~~~~~~- 596 (792)
.+.+.|+++.... |++++|.||.||||||+|+.+++-.--+ .+-.||+.+..-++-..
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV 121 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTV 121 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccH
Confidence 3688999999888 9999999999999999999998655311 12235555443222111
Q ss_pred ------------c-------------------------cc-h----hhccchhHHHHHHHHHHHHhCCCCeEEEEeCCCC
Q 043119 597 ------------S-------------------------KH-M----TAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGK 634 (792)
Q Consensus 597 ------------~-------------------------~~-~----~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~~~ 634 (792)
. +. + .++.| .+|.+|++.++...++|+++++||||+
T Consensus 122 ~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiS--GGErkRvsia~Ell~~P~iLflDEPTS 199 (613)
T KOG0061|consen 122 RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLS--GGERKRVSIALELLTDPSILFLDEPTS 199 (613)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccc--cchhhHHHHHHHHHcCCCEEEecCCCC
Confidence 0 00 0 01222 258999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChh
Q 043119 635 GTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTE 669 (792)
Q Consensus 635 gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~ 669 (792)
|.|...+..+. .+++.+++. |++||++=|.+.
T Consensus 200 GLDS~sA~~vv-~~Lk~lA~~--grtVi~tIHQPs 231 (613)
T KOG0061|consen 200 GLDSFSALQVV-QLLKRLARS--GRTVICTIHQPS 231 (613)
T ss_pred CcchhhHHHHH-HHHHHHHhC--CCEEEEEEeCCc
Confidence 99999999985 588888886 789999999973
No 380
>PTZ00243 ABC transporter; Provisional
Probab=98.90 E-value=3.3e-09 Score=136.45 Aligned_cols=131 Identities=15% Similarity=0.178 Sum_probs=86.5
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh-------hcCccccCCceee--e---------cccc-c
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS-------HIGSFVPADAATV--G---------LTDS-K 598 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la-------q~g~~vpa~~~~~--~---------~~~~-~ 598 (792)
++.+.+|++|+.+ |++++|+|||||||||||+++++..-.. ..-.|||.+..-+ + ..+. +
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~ 751 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAAR 751 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHH
Confidence 3568889999998 9999999999999999999998653211 1112555542110 0 0000 0
Q ss_pred -----------------------chhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 043119 599 -----------------------HMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVT 654 (792)
Q Consensus 599 -----------------------~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~ 654 (792)
.+......+++++ ++++.+...+.+++++|||||+++.|+..+..+...++....+
T Consensus 752 ~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~ 831 (1560)
T PTZ00243 752 LADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALA 831 (1560)
T ss_pred HHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhC
Confidence 0011123344444 4455455557899999999999999998888876555433322
Q ss_pred CCCCcEEEEEccChhhhh
Q 043119 655 CDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 655 ~~~~~~~l~~TH~~~l~~ 672 (792)
+.++|++||+++.+.
T Consensus 832 ---~~TvIlvTH~~~~~~ 846 (1560)
T PTZ00243 832 ---GKTRVLATHQVHVVP 846 (1560)
T ss_pred ---CCEEEEEeCCHHHHH
Confidence 579999999998875
No 381
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.90 E-value=1.3e-08 Score=111.34 Aligned_cols=49 Identities=22% Similarity=0.209 Sum_probs=36.7
Q ss_pred hCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 620 QATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 620 ~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
...+|+|+|||||+.|+|+.... | +-++|.+.+ .++.++++|+.+..+.
T Consensus 236 Lf~kP~LLLLDEPtnhLDleA~~---w-Lee~L~k~d-~~~lVi~sh~QDfln~ 284 (614)
T KOG0927|consen 236 LFQKPDLLLLDEPTNHLDLEAIV---W-LEEYLAKYD-RIILVIVSHSQDFLNG 284 (614)
T ss_pred HhcCCCEEEecCCccCCCHHHHH---H-HHHHHHhcc-CceEEEEecchhhhhh
Confidence 36899999999999999985433 2 446666654 3378899999988653
No 382
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.90 E-value=2.8e-09 Score=135.79 Aligned_cols=127 Identities=12% Similarity=0.036 Sum_probs=83.7
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH---H---hhc-----------------CccccCCceeeec-
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF---L---SHI-----------------GSFVPADAATVGL- 594 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~---l---aq~-----------------g~~vpa~~~~~~~- 594 (792)
+.+.+|+++... |++++|+||||||||||||++++..- . +.+ -.|||.+...++.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 346678888887 99999999999999999999987531 0 000 1233333211100
Q ss_pred ---------------------cc-----c---cchhh--cc-------------chhH-HHHHHHHHHHHhCCCCeEEEE
Q 043119 595 ---------------------TD-----S---KHMTA--EQ-------------SSFM-IDLHQVGMMLRQATSQSLCLL 629 (792)
Q Consensus 595 ---------------------~~-----~---~~~~~--~~-------------s~f~-~e~~~~~~~l~~~~~~slvll 629 (792)
.+ . +.+.. ++ ..++ +|.++++.+...+++|+++++
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlll 233 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCW 233 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEE
Confidence 00 0 00000 00 1122 345666666667899999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccCh
Q 043119 630 DEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLT 668 (792)
Q Consensus 630 DE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~ 668 (792)
|||++|+|+.....+. .+++.+.+.. +.++|++||++
T Consensus 234 DEPTsgLD~~~~~~i~-~~L~~la~~~-g~tvii~~Hq~ 270 (1394)
T TIGR00956 234 DNATRGLDSATALEFI-RALKTSANIL-DTTPLVAIYQC 270 (1394)
T ss_pred eCCCCCcCHHHHHHHH-HHHHHHHHhc-CCEEEEEecCC
Confidence 9999999999999985 5777777532 57899999996
No 383
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.90 E-value=5.2e-09 Score=133.57 Aligned_cols=65 Identities=11% Similarity=0.060 Sum_probs=48.1
Q ss_pred hhHHH-HHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 606 SFMID-LHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 606 ~f~~e-~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.++++ .++++.+.+.+.+|+++|||||+++.|+.....+. ..++.+.+. .+.|+|++||+++.+.
T Consensus 579 ~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~-~~L~~~~~~-~g~TvIiIsHrls~i~ 644 (1466)
T PTZ00265 579 KLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQ-KTINNLKGN-ENRITIIIAHRLSTIR 644 (1466)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH-HHHHHHhhc-CCCEEEEEeCCHHHHH
Confidence 34444 45555555667999999999999999998877774 456666532 1579999999998764
No 384
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.87 E-value=1.4e-08 Score=106.50 Aligned_cols=47 Identities=13% Similarity=0.154 Sum_probs=38.3
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 622 TSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 622 ~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.++.++|+|||++|+|+.....+.. ++..+.+ +.++|++||..++.+
T Consensus 187 ~~~~illlDEPt~~ld~~~~~~~~~-~l~~~~~---g~~ii~iSH~~~~~~ 233 (251)
T cd03273 187 KPAPMYILDEVDAALDLSHTQNIGR-MIKTHFK---GSQFIVVSLKEGMFN 233 (251)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHcC---CCEEEEEECCHHHHH
Confidence 5779999999999999998888754 5555543 568999999988765
No 385
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.87 E-value=6.1e-09 Score=111.56 Aligned_cols=119 Identities=23% Similarity=0.257 Sum_probs=82.5
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC------ccccCC-----ceee----------------------eccc-c
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIG------SFVPAD-----AATV----------------------GLTD-S 597 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g------~~vpa~-----~~~~----------------------~~~~-~ 597 (792)
|+++++.||||-|||||.|.+|+..-.-..+ +|-|.- ..++ .++. .
T Consensus 367 gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~ 446 (591)
T COG1245 367 GEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLE 446 (591)
T ss_pred ceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccchH
Confidence 7899999999999999999988654321110 111110 0000 0000 1
Q ss_pred cchhhccchh-HHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 598 KHMTAEQSSF-MIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 598 ~~~~~~~s~f-~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+.+......+ .+|+|+++.++..+.+.+|.|||||.+-+|...+...+. +++++.+.+ +++.+++-||.-+.+
T Consensus 447 ~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vak-vIRR~~e~~-~kta~vVdHDi~~~d 520 (591)
T COG1245 447 DLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAK-VIRRFIENN-EKTALVVDHDIYMID 520 (591)
T ss_pred HHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHH-HHHHHHhhc-CceEEEEecceehhh
Confidence 1112222222 269999999999999999999999999999999998876 667777654 689999999998875
No 386
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.87 E-value=1.1e-08 Score=108.16 Aligned_cols=131 Identities=16% Similarity=0.231 Sum_probs=92.8
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCcc-----------------ccCCc-eeee------
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSF-----------------VPADA-ATVG------ 593 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~-----------------vpa~~-~~~~------ 593 (792)
..++..|++|... |.+.+|+|+.|+||||+||+|.+.+.-----.| +|.+. ..++
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tile 474 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILE 474 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHH
Confidence 3578889999988 999999999999999999999876532111011 11110 0111
Q ss_pred --------------------ccc---ccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHH
Q 043119 594 --------------------LTD---SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTIN 650 (792)
Q Consensus 594 --------------------~~~---~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~ 650 (792)
+.| -+....++|+...|-..++.++ +..+.++++||+++-+|+..+..+|..+-+
T Consensus 475 hl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkll--aerpn~~~iDEF~AhLD~~TA~rVArkise 552 (593)
T COG2401 475 HLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLL--AERPNVLLIDEFAAHLDELTAVRVARKISE 552 (593)
T ss_pred HHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHH--hcCCCcEEhhhhhhhcCHHHHHHHHHHHHH
Confidence 111 1112234677777777777776 678899999999999999999999876655
Q ss_pred HHHhCCCCcEEEEEccChhhhhc
Q 043119 651 YFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 651 ~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
.-.+. +.|.+++||..++.+.
T Consensus 553 laRe~--giTlivvThrpEv~~A 573 (593)
T COG2401 553 LAREA--GITLIVVTHRPEVGNA 573 (593)
T ss_pred HHHHh--CCeEEEEecCHHHHhc
Confidence 44343 7899999999999864
No 387
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.86 E-value=3.3e-08 Score=127.50 Aligned_cols=144 Identities=13% Similarity=0.119 Sum_probs=93.7
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------hhcCccccCCceee-
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------SHIGSFVPADAATV- 592 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------aq~g~~vpa~~~~~- 592 (792)
.+.+++...-+- ..+..+.+|++++.+ |++++|+|||||||||+||.+++..-. +++ .|||.+..-.
T Consensus 636 ~i~~~~~~~~~~--~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i-~yv~Q~~~l~~ 712 (1522)
T TIGR00957 636 SITVHNATFTWA--RDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSV-AYVPQQAWIQN 712 (1522)
T ss_pred cEEEEEeEEEcC--CCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEE-EEEcCCccccC
Confidence 466666554331 112468899999998 999999999999999999999875422 112 2555542210
Q ss_pred ---------e-cccc-------------c-----------chhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCC
Q 043119 593 ---------G-LTDS-------------K-----------HMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTL 637 (792)
Q Consensus 593 ---------~-~~~~-------------~-----------~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~ 637 (792)
+ ..|. + .+...-..+++++ ++++.+.+...+++++|+|||+++.|
T Consensus 713 ~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD 792 (1522)
T TIGR00957 713 DSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 792 (1522)
T ss_pred CcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 0 0110 0 0111123444444 44554445578999999999999999
Q ss_pred HHHHHHHHHHHHHH--HHhCCCCcEEEEEccChhhhh
Q 043119 638 TEDGIGLLGGTINY--FVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 638 ~~~~~~l~~~~~~~--l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+..+..+...+.+. +. + +.++|++||+.+.+.
T Consensus 793 ~~~~~~i~~~l~~~~~~~-~--~~tvIlvTH~~~~l~ 826 (1522)
T TIGR00957 793 AHVGKHIFEHVIGPEGVL-K--NKTRILVTHGISYLP 826 (1522)
T ss_pred HHHHHHHHHHHhhhhhhh-c--CCEEEEEeCChhhhh
Confidence 99988887655532 22 2 579999999998764
No 388
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.86 E-value=6e-09 Score=97.62 Aligned_cols=130 Identities=18% Similarity=0.202 Sum_probs=83.8
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH-------HhhcCcccc---CC--------ceeee-------
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF-------LSHIGSFVP---AD--------AATVG------- 593 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~-------laq~g~~vp---a~--------~~~~~------- 593 (792)
-.|.++++|+.. |+++++-||.|+||||+||++-.... .-|.|..+. |+ .-++|
T Consensus 24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLR 103 (235)
T COG4778 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLR 103 (235)
T ss_pred eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHH
Confidence 356779999998 99999999999999999998743221 111121110 00 00011
Q ss_pred ------ccc------------------------------ccchhhccchhHHHHHHHHHHHH-hCCCCeEEEEeCCCCCC
Q 043119 594 ------LTD------------------------------SKHMTAEQSSFMIDLHQVGMMLR-QATSQSLCLLDEFGKGT 636 (792)
Q Consensus 594 ------~~~------------------------------~~~~~~~~s~f~~e~~~~~~~l~-~~~~~slvllDE~~~gt 636 (792)
..| .+.-.-.-+||+++-+|..+|.+ .+.+.++++||||++.+
T Consensus 104 viPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasL 183 (235)
T COG4778 104 VIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASL 183 (235)
T ss_pred hccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccc
Confidence 111 00011125799876666555554 46899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 637 LTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 637 ~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|...+..+. .++..-..+ |+.++=+-||.+.-+
T Consensus 184 Da~Nr~vVv-eli~e~Ka~--GaAlvGIFHDeevre 216 (235)
T COG4778 184 DATNRAVVV-ELIREAKAR--GAALVGIFHDEEVRE 216 (235)
T ss_pred cccchHHHH-HHHHHHHhc--CceEEEeeccHHHHH
Confidence 998776663 455554443 677777889987754
No 389
>PLN03232 ABC transporter C family member; Provisional
Probab=98.85 E-value=4.1e-08 Score=126.47 Aligned_cols=146 Identities=12% Similarity=0.114 Sum_probs=94.1
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh--------cCccccCCceee-
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH--------IGSFVPADAATV- 592 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq--------~g~~vpa~~~~~- 592 (792)
.+.++++.--+- ...+.++.+|++++.+ |+.++|+||+||||||+++.+.+..-... .-.|||.+..-+
T Consensus 614 ~I~~~~vsF~y~-~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~ 692 (1495)
T PLN03232 614 AISIKNGYFSWD-SKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFN 692 (1495)
T ss_pred cEEEEeeEEEcC-CCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCcccccc
Confidence 466665542220 0113578899999998 99999999999999999999875443211 113555543210
Q ss_pred ---------e-ccc-------------cc-----------chhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCC
Q 043119 593 ---------G-LTD-------------SK-----------HMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTL 637 (792)
Q Consensus 593 ---------~-~~~-------------~~-----------~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~ 637 (792)
+ ..| .+ .+..+-..+++ +.+|++.+-+...+++++|||||+++.|
T Consensus 693 gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD 772 (1495)
T PLN03232 693 ATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALD 772 (1495)
T ss_pred ccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 0 011 00 01111123443 4455555555578999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 638 TEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 638 ~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+..+..+...++....+ +.|+|++||.++...
T Consensus 773 ~~t~~~I~~~~l~~~l~---~kT~IlvTH~~~~l~ 804 (1495)
T PLN03232 773 AHVAHQVFDSCMKDELK---GKTRVLVTNQLHFLP 804 (1495)
T ss_pred HHHHHHHHHHHhhhhhc---CCEEEEEECChhhHH
Confidence 99888887666654433 569999999987754
No 390
>PLN03130 ABC transporter C family member; Provisional
Probab=98.85 E-value=5.5e-08 Score=125.53 Aligned_cols=146 Identities=14% Similarity=0.142 Sum_probs=95.3
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh--------cCccccCCcee--
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH--------IGSFVPADAAT-- 591 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq--------~g~~vpa~~~~-- 591 (792)
.+.++++.--+- ...+.++.+|++++.+ |+.++|+||+|||||||++.+.+..-... .-.|||.+..-
T Consensus 614 ~I~~~nvsf~y~-~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~Lfn 692 (1622)
T PLN03130 614 AISIKNGYFSWD-SKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFN 692 (1622)
T ss_pred ceEEEeeEEEcc-CCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCC
Confidence 466666543221 0113568899999998 99999999999999999999876653322 11356554321
Q ss_pred --------ee-ccc-------------cc-----------chhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCC
Q 043119 592 --------VG-LTD-------------SK-----------HMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTL 637 (792)
Q Consensus 592 --------~~-~~~-------------~~-----------~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~ 637 (792)
++ ..| .+ .+..+-..+++ +.+|++.+-+...+++++|||||+++.|
T Consensus 693 gTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD 772 (1622)
T PLN03130 693 ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772 (1622)
T ss_pred CCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccC
Confidence 00 111 00 01111123443 4455555555578999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 638 TEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 638 ~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+..+..+...++..+.+ ++|+|++||..+...
T Consensus 773 ~~~~~~I~~~~l~~~l~---~kTvIlVTH~l~~l~ 804 (1622)
T PLN03130 773 AHVGRQVFDKCIKDELR---GKTRVLVTNQLHFLS 804 (1622)
T ss_pred HHHHHHHHHHHhhHHhc---CCEEEEEECCHhHHH
Confidence 99888886666654433 579999999987764
No 391
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.84 E-value=8.1e-09 Score=115.54 Aligned_cols=130 Identities=16% Similarity=0.089 Sum_probs=89.0
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCc------cccCCce---------eeeccc--------
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGS------FVPADAA---------TVGLTD-------- 596 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~------~vpa~~~---------~~~~~~-------- 596 (792)
..-+|++|+.. |++++|+|+.||||||+.|+++++.-. ..|. .++.... .+..-|
T Consensus 305 ~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P-~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr 383 (539)
T COG1123 305 KAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP-SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPR 383 (539)
T ss_pred eeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCcc
Confidence 45789999998 999999999999999999999877643 1111 1111100 010001
Q ss_pred -----------------------------------cc-chhhccchhH-HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHH
Q 043119 597 -----------------------------------SK-HMTAEQSSFM-IDLHQVGMMLRQATSQSLCLLDEFGKGTLTE 639 (792)
Q Consensus 597 -----------------------------------~~-~~~~~~s~f~-~e~~~~~~~l~~~~~~slvllDE~~~gt~~~ 639 (792)
.+ ...+--..|+ ++.++++.+.+.+.+|.++++|||++.+|+.
T Consensus 384 ~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvs 463 (539)
T COG1123 384 MTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVS 463 (539)
T ss_pred ccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHH
Confidence 00 0000011223 3556777777779999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 640 DGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 640 ~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
-...+.. ++..+.++ .+.+.||+|||+..+..
T Consensus 464 vqa~Vln-Ll~~lq~e-~g~t~lfISHDl~vV~~ 495 (539)
T COG1123 464 VQAQVLN-LLKDLQEE-LGLTYLFISHDLAVVRY 495 (539)
T ss_pred HHHHHHH-HHHHHHHH-hCCEEEEEeCCHHHHHh
Confidence 8888864 55666554 37899999999999874
No 392
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.84 E-value=2.2e-09 Score=101.34 Aligned_cols=33 Identities=36% Similarity=0.564 Sum_probs=29.0
Q ss_pred cceeecCC-CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 544 NDTRIDND-GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 544 n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
++++++.. |++++|+||||||||||+|.+++..
T Consensus 2 ~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 2 KNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CceEEEEcCCCEEEEEccCCCccccceeeecccc
Confidence 57788877 9999999999999999999987654
No 393
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.84 E-value=1.1e-08 Score=96.25 Aligned_cols=46 Identities=15% Similarity=0.085 Sum_probs=39.4
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhh
Q 043119 623 SQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELL 671 (792)
Q Consensus 623 ~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~ 671 (792)
...|+|+|||.++.|.....++ ..++++++.. |-++|++.||+.-+
T Consensus 150 ~~~LLllDEP~~~LDvAQ~~aL-drll~~~c~~--G~~vims~HDLNhT 195 (248)
T COG4138 150 AGQLLLLDEPMNSLDVAQQSAL-DRLLSALCQQ--GLAIVMSSHDLNHT 195 (248)
T ss_pred cceeEEecCCCcchhHHHHHHH-HHHHHHHHhC--CcEEEEeccchhhH
Confidence 4479999999999999877777 7899999986 67999999998654
No 394
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=4.1e-08 Score=107.90 Aligned_cols=144 Identities=18% Similarity=0.119 Sum_probs=90.0
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh-----cCc-------------
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH-----IGS------------- 583 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq-----~g~------------- 583 (792)
.+.+++..--+- .....+.+|++|+.. |+=+.|+|+.||||||++..++..--.-| -|.
T Consensus 336 ~l~~~~vsF~y~--~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~ 413 (573)
T COG4987 336 ALELRNVSFTYP--GQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRET 413 (573)
T ss_pred eeeeccceeecC--CCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHH
Confidence 355555443331 134578999999998 99999999999999999998874321111 011
Q ss_pred --cccCCce-----------------e----------eeccc-ccc--------hhhccchh-HHHHHHHHHHHHhCCCC
Q 043119 584 --FVPADAA-----------------T----------VGLTD-SKH--------MTAEQSSF-MIDLHQVGMMLRQATSQ 624 (792)
Q Consensus 584 --~vpa~~~-----------------~----------~~~~~-~~~--------~~~~~s~f-~~e~~~~~~~l~~~~~~ 624 (792)
.++.+.- + +++-+ -+. +..+--.| .+|.+|++.+-....+.
T Consensus 414 i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~da 493 (573)
T COG4987 414 ISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDA 493 (573)
T ss_pred HhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCC
Confidence 1111100 0 00000 000 00111122 24667766665557899
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 625 SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 625 slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+++|+|||+-|.|+..-..+..-+.+++. ++++|++||...-++
T Consensus 494 pl~lLDEPTegLD~~TE~~vL~ll~~~~~----~kTll~vTHrL~~le 537 (573)
T COG4987 494 PLWLLDEPTEGLDPITERQVLALLFEHAE----GKTLLMVTHRLRGLE 537 (573)
T ss_pred CeEEecCCcccCChhhHHHHHHHHHHHhc----CCeEEEEecccccHh
Confidence 99999999999999988888665555543 468999999987665
No 395
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.82 E-value=1e-07 Score=112.08 Aligned_cols=141 Identities=18% Similarity=0.203 Sum_probs=93.5
Q ss_pred EEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHH---------------------HHhhc
Q 043119 524 LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIV---------------------FLSHI 581 (792)
Q Consensus 524 l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~---------------------~laq~ 581 (792)
+.+++...-+ ..++.+.+|++|..+ |+.++|+||+||||||+++.+.... +..++
T Consensus 329 I~f~~vsf~y---~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I 405 (567)
T COG1132 329 IEFENVSFSY---PGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRI 405 (567)
T ss_pred EEEEEEEEEc---CCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhc
Confidence 5555544333 114678899999998 9999999999999999999886442 23455
Q ss_pred CccccCCceee----------ecc---c-------------------cc----chhhccchhH-HHHHHHHHHHHhCCCC
Q 043119 582 GSFVPADAATV----------GLT---D-------------------SK----HMTAEQSSFM-IDLHQVGMMLRQATSQ 624 (792)
Q Consensus 582 g~~vpa~~~~~----------~~~---~-------------------~~----~~~~~~s~f~-~e~~~~~~~l~~~~~~ 624 (792)
| +||.+..-+ +-- | ++ .+..+-+.++ +|.++++.+-....++
T Consensus 406 ~-~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~ 484 (567)
T COG1132 406 G-IVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNP 484 (567)
T ss_pred c-EEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 5 677553211 100 0 00 0111123344 3455566555567899
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 625 SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 625 slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+++||||+++..|+..-..+..++. .+.+ +.|+++++|.+....
T Consensus 485 ~ILILDEaTSalD~~tE~~I~~~l~-~l~~---~rT~iiIaHRlsti~ 528 (567)
T COG1132 485 PILILDEATSALDTETEALIQDALK-KLLK---GRTTLIIAHRLSTIK 528 (567)
T ss_pred CEEEEeccccccCHHhHHHHHHHHH-HHhc---CCEEEEEeccHhHHH
Confidence 9999999999999988888765544 4443 358899999987764
No 396
>PLN03140 ABC transporter G family member; Provisional
Probab=98.82 E-value=4.5e-09 Score=133.58 Aligned_cols=55 Identities=13% Similarity=0.106 Sum_probs=42.7
Q ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccCh
Q 043119 612 HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLT 668 (792)
Q Consensus 612 ~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~ 668 (792)
++++.+...+++++++++|||++|+|+.....+. ..++.+++.. +.++|++||++
T Consensus 343 kRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~-~~Lr~la~~~-g~Tviis~Hqp 397 (1470)
T PLN03140 343 KRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIV-KCLQQIVHLT-EATVLMSLLQP 397 (1470)
T ss_pred eeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHH-HHHHHHHHhc-CCEEEEEecCC
Confidence 3444444456899999999999999999999996 4667776532 67999999985
No 397
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.81 E-value=2.9e-08 Score=119.34 Aligned_cols=145 Identities=17% Similarity=0.173 Sum_probs=94.3
Q ss_pred CCcEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHH---------------------HH
Q 043119 521 EPLLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIV---------------------FL 578 (792)
Q Consensus 521 ~~~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~---------------------~l 578 (792)
.+.+++++..--+-. .++..|.++++|..+ |+.++|+||+||||||+++.+.... +.
T Consensus 348 ~g~ief~nV~FsYPs-Rpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr 426 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPS-RPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLR 426 (1228)
T ss_pred ccceEEEEEEecCCC-CCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHH
Confidence 345677666544322 235689999999999 9999999999999999999876432 23
Q ss_pred hhcCccccCCc----------eeeeccc---------------------------ccchhhccchhHHHH-HHHHHHHHh
Q 043119 579 SHIGSFVPADA----------ATVGLTD---------------------------SKHMTAEQSSFMIDL-HQVGMMLRQ 620 (792)
Q Consensus 579 aq~g~~vpa~~----------~~~~~~~---------------------------~~~~~~~~s~f~~e~-~~~~~~l~~ 620 (792)
.|+|. |.++. -.+|.-| +.....+ -..++++ +|++.+-+.
T Consensus 427 ~~igl-V~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g-~qLSGGQKQRIAIARal 504 (1228)
T KOG0055|consen 427 SQIGL-VSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERG-VQLSGGQKQRIAIARAL 504 (1228)
T ss_pred hhcCe-eeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCC-CCCChHHHHHHHHHHHH
Confidence 34543 22211 0111111 0000111 1133344 556655566
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 621 ATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 621 ~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+.+|.++||||+++++|+..-.-+ ...+++..+ |.|+|+++|.+....
T Consensus 505 v~~P~ILLLDEaTSaLD~~se~~V-q~ALd~~~~---grTTivVaHRLStIr 552 (1228)
T KOG0055|consen 505 VRNPKILLLDEATSALDAESERVV-QEALDKASK---GRTTIVVAHRLSTIR 552 (1228)
T ss_pred HhCCCEEEecCcccccCHHHHHHH-HHHHHHhhc---CCeEEEEeeehhhhh
Confidence 899999999999999999665555 456666654 569999999998764
No 398
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.79 E-value=4e-08 Score=93.79 Aligned_cols=56 Identities=18% Similarity=0.300 Sum_probs=47.2
Q ss_pred HHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 614 VGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 614 ~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
++.+.+..+..-+.|||||-+|++|....+++ +++..+++. |.-+|++||-+-|..
T Consensus 137 ~~i~~~rf~~~GiYiLDEPEa~LSp~RQlell-a~l~~la~s--GaQ~IiATHSPiLlA 192 (233)
T COG3910 137 LAIFHNRFNGQGIYILDEPEAALSPSRQLELL-AILRDLADS--GAQIIIATHSPILLA 192 (233)
T ss_pred HHHHHHHhccCceEEecCccccCCHHHHHHHH-HHHHHHHhc--CCeEEEEecChhhee
Confidence 44555667889999999999999999999996 689999886 578999999987753
No 399
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.77 E-value=2.4e-07 Score=105.33 Aligned_cols=127 Identities=17% Similarity=0.136 Sum_probs=82.7
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCcee--------ee----------------c
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAAT--------VG----------------L 594 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~--------~~----------------~ 594 (792)
....++.+++.+ |+-+.|+||+|+||||++|++|++=.-+....-.|++... ++ .
T Consensus 406 ~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~ 485 (604)
T COG4178 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDF 485 (604)
T ss_pred CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCC
Confidence 456667777777 9999999999999999999999875443322222222111 00 0
Q ss_pred cc----------------c-----cchhhccchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 043119 595 TD----------------S-----KHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFV 653 (792)
Q Consensus 595 ~~----------------~-----~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~ 653 (792)
-| . +.-...+| .+|.++++.+--..++|++++|||.+++.|+..-..+.. .++.-.
T Consensus 486 ~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS--~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q-~l~~~l 562 (604)
T COG4178 486 SDAELVAVLHKVGLGDLAERLDEEDRWDRVLS--GGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQ-LLKEEL 562 (604)
T ss_pred ChHHHHHHHHHcCcHHHHHHHhccCcHhhhcC--hhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHH-HHHhhC
Confidence 00 0 00001123 246677776666689999999999999999977666643 333211
Q ss_pred hCCCCcEEEEEccChhhhh
Q 043119 654 TCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 654 ~~~~~~~~l~~TH~~~l~~ 672 (792)
.++++|.+.|-..+..
T Consensus 563 ---p~~tvISV~Hr~tl~~ 578 (604)
T COG4178 563 ---PDATVISVGHRPTLWN 578 (604)
T ss_pred ---CCCEEEEeccchhhHH
Confidence 2679999999887754
No 400
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.73 E-value=3e-08 Score=95.73 Aligned_cols=143 Identities=17% Similarity=0.140 Sum_probs=84.7
Q ss_pred CcEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh----cC--------------
Q 043119 522 PLLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH----IG-------------- 582 (792)
Q Consensus 522 ~~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq----~g-------------- 582 (792)
..|++.+.+.-+-+ ..++--|++++.+ |.=.+++|+|||||||+||.+++-....- .+
T Consensus 12 ~aievsgl~f~y~~---~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKV---SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred ceEEEeccEEeccc---CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccC
Confidence 35677777655522 2355568888888 88889999999999999998865432110 00
Q ss_pred --ccccCC-------ceeeec---------------------------ccccc--hhhccchhHHHHHHHHHHHHhCCCC
Q 043119 583 --SFVPAD-------AATVGL---------------------------TDSKH--MTAEQSSFMIDLHQVGMMLRQATSQ 624 (792)
Q Consensus 583 --~~vpa~-------~~~~~~---------------------------~~~~~--~~~~~s~f~~e~~~~~~~l~~~~~~ 624 (792)
+|...+ ...+++ .|-+. -....|. ++.++....+....+-
T Consensus 89 dl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSD--GqrRRVQicMGLL~Pf 166 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSD--GQRRRVQICMGLLKPF 166 (291)
T ss_pred ceeEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccc--cchhhhHHHHhcccce
Confidence 010000 000110 00000 0001221 1223333334446788
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhh
Q 043119 625 SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELL 671 (792)
Q Consensus 625 slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~ 671 (792)
.+++|||.+-.+|...+..+.. .++.-++.+ +++++++||..+=+
T Consensus 167 kVLLLDEVTVDLDVlARadLLe-FlkeEce~R-gatIVYATHIFDGL 211 (291)
T KOG2355|consen 167 KVLLLDEVTVDLDVLARADLLE-FLKEECEQR-GATIVYATHIFDGL 211 (291)
T ss_pred eEEEeeeeEeehHHHHHHHHHH-HHHHHHhhc-CcEEEEEeeeccch
Confidence 9999999999999988888864 444444443 79999999986644
No 401
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=2.4e-08 Score=105.93 Aligned_cols=47 Identities=19% Similarity=0.149 Sum_probs=37.9
Q ss_pred hCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 620 QATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 620 ~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
....|+++|||||+.++|...--+++.+|-+| ...||++||+-.++.
T Consensus 719 al~~PDvlILDEPTNNLDIESIDALaEAIney------~GgVi~VsHDeRLi~ 765 (807)
T KOG0066|consen 719 ALGGPDVLILDEPTNNLDIESIDALAEAINEY------NGGVIMVSHDERLIV 765 (807)
T ss_pred hcCCCCEEEecCCCCCcchhhHHHHHHHHHhc------cCcEEEEecccceee
Confidence 35899999999999999998887887665544 235899999988864
No 402
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.71 E-value=4.7e-08 Score=89.81 Aligned_cols=128 Identities=13% Similarity=0.074 Sum_probs=77.2
Q ss_pred ccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh-----------hcCccccCCceeeeccc--------------
Q 043119 543 PNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS-----------HIGSFVPADAATVGLTD-------------- 596 (792)
Q Consensus 543 ~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la-----------q~g~~vpa~~~~~~~~~-------------- 596 (792)
.-+++++.. |+++-|.||.||||||++--+++..--+ |---.+||.+-.+++.-
T Consensus 18 La~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~N 97 (213)
T COG4136 18 LANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQN 97 (213)
T ss_pred EEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccc
Confidence 347888887 9999999999999999998765443110 00012454443333221
Q ss_pred ------------cc-c--------------hhhccchhHHHHH-HHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHH
Q 043119 597 ------------SK-H--------------MTAEQSSFMIDLH-QVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGT 648 (792)
Q Consensus 597 ------------~~-~--------------~~~~~s~f~~e~~-~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~ 648 (792)
.| . ....--+.+++.+ +++..-.....|.++++|||++..|..=+...-.-+
T Consensus 98 l~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wV 177 (213)
T COG4136 98 LLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWV 177 (213)
T ss_pred eEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHH
Confidence 00 0 0001112233332 333333345789999999999999987665555445
Q ss_pred HHHHHhCCCCcEEEEEccChhhhh
Q 043119 649 INYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 649 ~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
....... +.-++.+|||++-+.
T Consensus 178 Fs~~r~a--giPtv~VTHD~~Dvp 199 (213)
T COG4136 178 FSEVRAA--GIPTVQVTHDLQDVP 199 (213)
T ss_pred HHHHHhc--CCCeEEEecccccCC
Confidence 6666554 345789999987653
No 403
>PLN03232 ABC transporter C family member; Provisional
Probab=98.70 E-value=2.6e-07 Score=119.23 Aligned_cols=143 Identities=12% Similarity=0.063 Sum_probs=91.4
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH---------------------Hhh
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF---------------------LSH 580 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~---------------------laq 580 (792)
.|.+++..--+- .....|.+|++++.+ |+.++|+||+||||||+++.+..+.- ..+
T Consensus 1234 ~I~f~nVsf~Y~--~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~ 1311 (1495)
T PLN03232 1234 SIKFEDVHLRYR--PGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV 1311 (1495)
T ss_pred cEEEEEEEEEEC--CCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhh
Confidence 466665543321 112468999999998 99999999999999999998875431 112
Q ss_pred cCccccCCceee--------eccc----c------------c-----------chhhccchhHHHHH-HHHHHHHhCCCC
Q 043119 581 IGSFVPADAATV--------GLTD----S------------K-----------HMTAEQSSFMIDLH-QVGMMLRQATSQ 624 (792)
Q Consensus 581 ~g~~vpa~~~~~--------~~~~----~------------~-----------~~~~~~s~f~~e~~-~~~~~l~~~~~~ 624 (792)
+ .+||.+..-+ .+.+ . + .+..+-+.++++.+ +++.+-+...++
T Consensus 1312 i-~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~ 1390 (1495)
T PLN03232 1312 L-SIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRS 1390 (1495)
T ss_pred c-EEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 2 3566553211 1111 0 0 01112234555444 444444446899
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 625 SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 625 slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+++||||++++.|+..-..|. ..++...+ ++|+|++||.++...
T Consensus 1391 ~ILILDEATSaLD~~Te~~Iq-~~L~~~~~---~~TvI~IAHRl~ti~ 1434 (1495)
T PLN03232 1391 KILVLDEATASVDVRTDSLIQ-RTIREEFK---SCTMLVIAHRLNTII 1434 (1495)
T ss_pred CEEEEECCcccCCHHHHHHHH-HHHHHHcC---CCEEEEEeCCHHHHH
Confidence 999999999999997766664 44444332 579999999998765
No 404
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.69 E-value=1.6e-07 Score=113.55 Aligned_cols=65 Identities=18% Similarity=0.237 Sum_probs=47.5
Q ss_pred chhHHHH-HHHHHHHHhCC---CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 605 SSFMIDL-HQVGMMLRQAT---SQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 605 s~f~~e~-~~~~~~l~~~~---~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
++++.++ ++++.+...+. +++++|||||++|+|+.+...+. .++..+.+. +.++|++||+++++.
T Consensus 827 ~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~-~~L~~l~~~--G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 827 TTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLL-EVLQRLVDQ--GNTVVVIEHNLDVIK 895 (924)
T ss_pred ccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhC--CCEEEEEeCCHHHHH
Confidence 3444444 44433333343 57999999999999999999885 467777764 679999999999874
No 405
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.68 E-value=8e-08 Score=122.85 Aligned_cols=62 Identities=11% Similarity=0.043 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 609 IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 609 ~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
++.+|++.+-+...+|+++||||++++.|+.....+.. .++.+... .+.|+|++||.++...
T Consensus 1362 GQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~-~L~~~~~~-~~~TvIiIaHRlsti~ 1423 (1466)
T PTZ00265 1362 GQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEK-TIVDIKDK-ADKTIITIAHRIASIK 1423 (1466)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH-HHHHHhcc-CCCEEEEEechHHHHH
Confidence 35566666666689999999999999999987777754 44555321 1579999999998765
No 406
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.67 E-value=1.7e-07 Score=113.54 Aligned_cols=65 Identities=22% Similarity=0.233 Sum_probs=48.1
Q ss_pred chhHHHH-HHHHHHHHhCCCC---eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 605 SSFMIDL-HQVGMMLRQATSQ---SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 605 s~f~~e~-~~~~~~l~~~~~~---slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
++++.++ ++++.+...+.++ +++|||||++|+|+.+...+. .++..+.+. +.++|++||+++.+.
T Consensus 829 ~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~-~~L~~l~~~--G~TVIiitH~~~~i~ 897 (943)
T PRK00349 829 TTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLL-EVLHRLVDK--GNTVVVIEHNLDVIK 897 (943)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHH-HHHHHHHhC--CCEEEEEecCHHHHH
Confidence 4444444 4444444445555 899999999999999998885 567777664 679999999998874
No 407
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=6.7e-08 Score=110.04 Aligned_cols=145 Identities=15% Similarity=0.197 Sum_probs=89.2
Q ss_pred CcEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHH---------------------HHh
Q 043119 522 PLLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIV---------------------FLS 579 (792)
Q Consensus 522 ~~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~---------------------~la 579 (792)
+.|++++...-+= ..++..|.+|++|+.+ |++++|+||+||||||....+--.- +--
T Consensus 464 G~IeF~~VsFaYP-~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~ 542 (716)
T KOG0058|consen 464 GVIEFEDVSFAYP-TRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRR 542 (716)
T ss_pred ceEEEEEeeeecC-CCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHH
Confidence 4566666544331 1245689999999999 9999999999999999988664221 011
Q ss_pred hcCccccCCce----------eeeccc---------------------------ccchhhccchhHH-HHHHHHHHHHhC
Q 043119 580 HIGSFVPADAA----------TVGLTD---------------------------SKHMTAEQSSFMI-DLHQVGMMLRQA 621 (792)
Q Consensus 580 q~g~~vpa~~~----------~~~~~~---------------------------~~~~~~~~s~f~~-e~~~~~~~l~~~ 621 (792)
++| +|-.+-- .+|.-. +..- ..-+..++ +.+|++.+-+..
T Consensus 543 ~Ig-~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VG-EkG~qLSGGQKQRIAIARALl 620 (716)
T KOG0058|consen 543 KIG-LVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVG-EKGSQLSGGQKQRIAIARALL 620 (716)
T ss_pred Hee-eeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccC-CccccccchHHHHHHHHHHHh
Confidence 222 1211100 000000 0000 11123333 345666666668
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 622 TSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 622 ~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
.+|.++||||.++.+|...-..+ ...+..+.+ +.|||++.|-+...+.
T Consensus 621 r~P~VLILDEATSALDaeSE~lV-q~aL~~~~~---~rTVlvIAHRLSTV~~ 668 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDAESEYLV-QEALDRLMQ---GRTVLVIAHRLSTVRH 668 (716)
T ss_pred cCCCEEEEechhhhcchhhHHHH-HHHHHHhhc---CCeEEEEehhhhHhhh
Confidence 99999999999999998554444 445555554 4599999999988764
No 408
>PLN03130 ABC transporter C family member; Provisional
Probab=98.65 E-value=2.6e-07 Score=119.39 Aligned_cols=143 Identities=12% Similarity=0.094 Sum_probs=91.5
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH---------------------Hhh
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF---------------------LSH 580 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~---------------------laq 580 (792)
.|.+++..--+- .....|.+|++|+.+ |+.++|+||+||||||+++.+..+.- ..+
T Consensus 1237 ~I~f~nVsf~Y~--~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~ 1314 (1622)
T PLN03130 1237 SIKFEDVVLRYR--PELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKV 1314 (1622)
T ss_pred cEEEEEEEEEeC--CCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhc
Confidence 466665543221 112468999999998 99999999999999999999875531 122
Q ss_pred cCccccCCcee--------eeccc----c------------c-----------chhhccchhHHHHHH-HHHHHHhCCCC
Q 043119 581 IGSFVPADAAT--------VGLTD----S------------K-----------HMTAEQSSFMIDLHQ-VGMMLRQATSQ 624 (792)
Q Consensus 581 ~g~~vpa~~~~--------~~~~~----~------------~-----------~~~~~~s~f~~e~~~-~~~~l~~~~~~ 624 (792)
+ .+||.+..- +.+.+ . + .+..+-+.|+++.+| ++.+-+...++
T Consensus 1315 I-siVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p 1393 (1622)
T PLN03130 1315 L-GIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRS 1393 (1622)
T ss_pred c-EEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 2 245655321 11110 0 0 011122345555544 44444446899
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 625 SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 625 slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+++||||++++.|+..-..|. ..++...+ ++|+|+++|.++...
T Consensus 1394 ~ILILDEATSaLD~~Te~~Iq-~~I~~~~~---~~TvI~IAHRL~tI~ 1437 (1622)
T PLN03130 1394 KILVLDEATAAVDVRTDALIQ-KTIREEFK---SCTMLIIAHRLNTII 1437 (1622)
T ss_pred CEEEEECCCCCCCHHHHHHHH-HHHHHHCC---CCEEEEEeCChHHHH
Confidence 999999999999997766654 44444432 579999999998865
No 409
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.65 E-value=1.5e-07 Score=100.02 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=37.5
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 623 SQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 623 ~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+++++|+|||++|+|+.....+.. ++..+.+ +.++|++||++++..
T Consensus 192 ~p~vlllDEp~~~Ld~~~~~~l~~-~l~~~~~---~~tii~isH~~~~~~ 237 (276)
T cd03241 192 AVPTLIFDEIDTGISGEVAQAVGK-KLKELSR---SHQVLCITHLPQVAA 237 (276)
T ss_pred CCCEEEEECCccCCCHHHHHHHHH-HHHHHhC---CCEEEEEechHHHHH
Confidence 999999999999999988887754 4555543 468999999998754
No 410
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.62 E-value=3.4e-07 Score=98.49 Aligned_cols=145 Identities=21% Similarity=0.230 Sum_probs=95.6
Q ss_pred EEEecccceeeecccCceeccceeec-----CCCcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccc-cCC-c-------
Q 043119 524 LDIQNGRHVLQEMTVDTFIPNDTRID-----NDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFV-PAD-A------- 589 (792)
Q Consensus 524 l~i~~~~hp~~~~~~~~~v~n~~~~~-----~~~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~v-pa~-~------- 589 (792)
|.|.+.-.-+-+.....|=+|.+.+- .+|++++|+||||-||||.+|.+++-...- .|-+= |.. .
T Consensus 67 I~IvnLP~eLe~e~vHRYg~NgFkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PN-LG~~~~pp~wdeVi~~Fr 145 (591)
T COG1245 67 ISIVNLPEELEEEVVHRYGVNGFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPN-LGRYEDPPSWDEVIKRFR 145 (591)
T ss_pred EEEecCchhhcccceeeccCCceEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccC-CCCCCCCCCHHHHHHHhh
Confidence 55555433332222345666666653 238999999999999999999887554321 11110 000 0
Q ss_pred -----------------e----------------e----------eeccc--------ccchhhccchhH-HHHHHHHHH
Q 043119 590 -----------------A----------------T----------VGLTD--------SKHMTAEQSSFM-IDLHQVGMM 617 (792)
Q Consensus 590 -----------------~----------------~----------~~~~~--------~~~~~~~~s~f~-~e~~~~~~~ 617 (792)
+ + -+.+| ...+.++.|..+ +|+|+++.+
T Consensus 146 GtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIa 225 (591)
T COG1245 146 GTELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIA 225 (591)
T ss_pred hhHHHHHHHHHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHH
Confidence 0 0 01111 111223334443 689999999
Q ss_pred HHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 618 LRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 618 l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
...+.+.++.++|||++=+|..++...|. +++.|++. +.++|++.||+.+++
T Consensus 226 a~l~rdADvY~FDEpsSyLDi~qRl~~ar-~Irel~~~--~k~ViVVEHDLavLD 277 (591)
T COG1245 226 AALLRDADVYFFDEPSSYLDIRQRLNAAR-VIRELAED--GKYVIVVEHDLAVLD 277 (591)
T ss_pred HHHhccCCEEEEcCCcccccHHHHHHHHH-HHHHHhcc--CCeEEEEechHHHHH
Confidence 98899999999999999999999999975 66777764 468999999998876
No 411
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.61 E-value=5.4e-07 Score=116.49 Aligned_cols=143 Identities=15% Similarity=0.084 Sum_probs=90.6
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH---------------------Hhh
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF---------------------LSH 580 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~---------------------laq 580 (792)
.|.+++..--+-+ ....|.+|++|+.+ |+.++|+||+||||||+++.+..+.- ..+
T Consensus 1284 ~I~f~nVsf~Y~~--~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~ 1361 (1522)
T TIGR00957 1284 RVEFRNYCLRYRE--DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFK 1361 (1522)
T ss_pred cEEEEEEEEEeCC--CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhc
Confidence 4666654322210 12468999999998 99999999999999999998875431 112
Q ss_pred cCccccCCcee--------eeccc----c-------------------c----chhhccchhHHHH-HHHHHHHHhCCCC
Q 043119 581 IGSFVPADAAT--------VGLTD----S-------------------K----HMTAEQSSFMIDL-HQVGMMLRQATSQ 624 (792)
Q Consensus 581 ~g~~vpa~~~~--------~~~~~----~-------------------~----~~~~~~s~f~~e~-~~~~~~l~~~~~~ 624 (792)
+ .+||.+..- +.+.+ . + .+..+-+.|+++. ++++.+-....++
T Consensus 1362 i-~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1440 (1522)
T TIGR00957 1362 I-TIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKT 1440 (1522)
T ss_pred C-eEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCC
Confidence 2 245655321 11111 0 0 0111123455544 4444444456899
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 625 SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 625 slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+++||||++++.|+..-..|. ..++...+ ++|+|++||.++...
T Consensus 1441 ~ILiLDEaTSalD~~Te~~Iq-~~l~~~~~---~~TvI~IAHRl~ti~ 1484 (1522)
T TIGR00957 1441 KILVLDEATAAVDLETDNLIQ-STIRTQFE---DCTVLTIAHRLNTIM 1484 (1522)
T ss_pred CEEEEECCcccCCHHHHHHHH-HHHHHHcC---CCEEEEEecCHHHHH
Confidence 999999999999997665553 44444332 579999999998765
No 412
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.61 E-value=2.3e-07 Score=119.45 Aligned_cols=128 Identities=15% Similarity=0.105 Sum_probs=85.2
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC---------------------ccccCCcee-----
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIG---------------------SFVPADAAT----- 591 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g---------------------~~vpa~~~~----- 591 (792)
...|.+|++|+.. |+.++|+|++||||||+++++..+.- .-| ++||.+..-
T Consensus 1231 ~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~--~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTI 1308 (1490)
T TIGR01271 1231 GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS--TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTF 1308 (1490)
T ss_pred CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCH
Confidence 3578999999998 99999999999999999999987642 112 244544221
Q ss_pred ---eeccc--c--------------c---c--------hhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHH
Q 043119 592 ---VGLTD--S--------------K---H--------MTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTED 640 (792)
Q Consensus 592 ---~~~~~--~--------------~---~--------~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~ 640 (792)
+.+.+ + + . +..+-+.|+++. ++++.+-....+++++||||++++.|+..
T Consensus 1309 R~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~T 1388 (1490)
T TIGR01271 1309 RKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVT 1388 (1490)
T ss_pred HHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHH
Confidence 11110 0 0 0 011112455444 44444444578999999999999999977
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 641 GIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 641 ~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
-..|.. .+....+ ++|+|++||.++.+.
T Consensus 1389 e~~I~~-~L~~~~~---~~TvI~IaHRl~ti~ 1416 (1490)
T TIGR01271 1389 LQIIRK-TLKQSFS---NCTVILSEHRVEALL 1416 (1490)
T ss_pred HHHHHH-HHHHHcC---CCEEEEEecCHHHHH
Confidence 666643 4444332 579999999998765
No 413
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.57 E-value=5.6e-07 Score=95.54 Aligned_cols=145 Identities=17% Similarity=0.155 Sum_probs=92.8
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCc------------
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADA------------ 589 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~------------ 589 (792)
.+.+++..--+-......-+.++++|+.. |+.++|+|..|||||....+|..+. +.-+.--|..+
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LL--p~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL--PSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhc--CCCcccCccceeEEcChhhhcCC
Confidence 44555544333222234567889999998 9999999999999999988876443 11111001000
Q ss_pred ---------eeeeccc------------------------------------------------cc---chhhccchhHH
Q 043119 590 ---------ATVGLTD------------------------------------------------SK---HMTAEQSSFMI 609 (792)
Q Consensus 590 ---------~~~~~~~------------------------------------------------~~---~~~~~~s~f~~ 609 (792)
..++.+- .+ .....+|. +
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSG--G 161 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSG--G 161 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCc--c
Confidence 0111110 00 00011222 2
Q ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 610 DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 610 e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
+.+++-.+++.+++|+|+|-|||+..+|..-...|. .+++.|..+ .+..++|+|||+.+...
T Consensus 162 qRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL-~Ll~~Lq~~-~gMa~lfITHDL~iVr~ 223 (534)
T COG4172 162 QRQRVMIAMALANEPDLLIADEPTTALDVTVQAQIL-DLLKELQAE-LGMAILFITHDLGIVRK 223 (534)
T ss_pred hhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHH-HHHHHHHHH-hCcEEEEEeccHHHHHH
Confidence 445555566678999999999999999998888885 477777664 37889999999998763
No 414
>PTZ00243 ABC transporter; Provisional
Probab=98.57 E-value=3.1e-07 Score=118.54 Aligned_cols=129 Identities=16% Similarity=0.101 Sum_probs=84.7
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhcCccccCCcee-------
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------------------SHIGSFVPADAAT------- 591 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------------------aq~g~~vpa~~~~------- 591 (792)
..|.+|++|+.+ |+.++|+|++||||||+++.+..+.-. -+.-++||.+..-
T Consensus 1323 ~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIre 1402 (1560)
T PTZ00243 1323 PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQ 1402 (1560)
T ss_pred CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHH
Confidence 458999999998 999999999999999999998655311 1122356665321
Q ss_pred -eeccc----------------cc-----------chhhccchhHHHHHHHHHHH-HhCCC-CeEEEEeCCCCCCCHHHH
Q 043119 592 -VGLTD----------------SK-----------HMTAEQSSFMIDLHQVGMML-RQATS-QSLCLLDEFGKGTLTEDG 641 (792)
Q Consensus 592 -~~~~~----------------~~-----------~~~~~~s~f~~e~~~~~~~l-~~~~~-~slvllDE~~~gt~~~~~ 641 (792)
+.+.+ .+ .+..+-+.++++.+|.-.+. ....+ ++++||||++++.|+..-
T Consensus 1403 NIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te 1482 (1560)
T PTZ00243 1403 NVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALD 1482 (1560)
T ss_pred HhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHH
Confidence 11111 00 01111244555555543333 33564 799999999999999776
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 642 IGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 642 ~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..|. .+++...+ ++|+|+++|.++.+.
T Consensus 1483 ~~Iq-~~L~~~~~---~~TvI~IAHRl~ti~ 1509 (1560)
T PTZ00243 1483 RQIQ-ATVMSAFS---AYTVITIAHRLHTVA 1509 (1560)
T ss_pred HHHH-HHHHHHCC---CCEEEEEeccHHHHH
Confidence 6664 44544432 579999999998765
No 415
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.56 E-value=2.4e-07 Score=117.27 Aligned_cols=48 Identities=21% Similarity=0.242 Sum_probs=41.4
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 622 TSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 622 ~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+++++|||||++|+|+.+...+. .++..+.+. +.++|++||+++.+.
T Consensus 829 ~~P~LLILDEPTsGLD~~~~~~Ll-~lL~~L~~~--G~TVIiIsHdl~~i~ 876 (1809)
T PRK00635 829 KKPTLYVLDEPTTGLHTHDIKALI-YVLQSLTHQ--GHTVVIIEHNMHVVK 876 (1809)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhc--CCEEEEEeCCHHHHH
Confidence 689999999999999999998885 567777765 678999999998863
No 416
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=98.47 E-value=1.7e-06 Score=75.60 Aligned_cols=91 Identities=32% Similarity=0.438 Sum_probs=68.7
Q ss_pred CcChhHHHHHHHHHhhHHHHHHHHHHHHhhCcccccccccCeEEEEcccceEEEEeccccchhhhhhcCCceEEEEeecC
Q 043119 361 GFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDG 440 (792)
Q Consensus 361 g~~~eLD~lr~~~~~l~~~L~~~~~~~~~~l~~~~~~~~~~~i~~~~~~Gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (792)
|+|++||.+|+.++++.+.++++.......+.. ..+++.|.++.||+++|+... ...+|. .|...+.
T Consensus 1 g~d~~Ld~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~lk~~~~~~~gy~i~v~~~~-----~~~~p~-~~~~~~~-- 67 (92)
T PF05190_consen 1 GFDEELDELREEYEEIEEELEELLEEIRKKLGI-----PSLKLVYIPKRGYLIEVPKSD-----EKKLPK-DFIIVSS-- 67 (92)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCT------TTBEEEEETTTEEEEEEETCC-----GGGSTT-TEEEEEE--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CcEEEEEcCceEEEEEEEccc-----cccCCC-ceEEEEE--
Confidence 789999999999999999999988777665543 245789999999999998643 224454 2333332
Q ss_pred CeeEEEEeChhhHHHHHHHHHHHH
Q 043119 441 ETKRLFYHTPKTRELDNLLGDIYH 464 (792)
Q Consensus 441 ~~~~~~~~~~~~~~l~~~~~~~~~ 464 (792)
.++.++|+|+++++|+.++.++.+
T Consensus 68 ~k~~~rf~t~~l~~L~~~~~~~~e 91 (92)
T PF05190_consen 68 TKSGVRFTTPELKELNEELKEAEE 91 (92)
T ss_dssp ESSEEEEECHHHHHHHHHHHHHHH
T ss_pred EcCcEEEECHHHHHHHHHHHHHhc
Confidence 245678999999999999987764
No 417
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.43 E-value=7e-07 Score=107.76 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=39.2
Q ss_pred CCCC-eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhh
Q 043119 621 ATSQ-SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTEL 670 (792)
Q Consensus 621 ~~~~-slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l 670 (792)
+.+| ++++||||++|+|...+..+. .+++.+++. |.+++.+-|.+..
T Consensus 945 vA~P~~ilFLDEPTSGLDsqaA~~i~-~~lrkla~t--GqtIlCTIHQPS~ 992 (1391)
T KOG0065|consen 945 VANPSSILFLDEPTSGLDSQAAAIVM-RFLRKLADT--GQTILCTIHQPSI 992 (1391)
T ss_pred ecCCceeEEecCCCCCccHHHHHHHH-HHHHHHHhc--CCeEEEEecCCcH
Confidence 4566 999999999999998887775 588889886 6799999999754
No 418
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.37 E-value=5.6e-06 Score=90.66 Aligned_cols=128 Identities=18% Similarity=0.192 Sum_probs=81.0
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh---------hcCccccCCce-eee-------ccc----
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS---------HIGSFVPADAA-TVG-------LTD---- 596 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la---------q~g~~vpa~~~-~~~-------~~~---- 596 (792)
...+.+..+|..+ |.-++||||||||||.+.|.+|++-..- +.-+|+|.... ..| .-|
T Consensus 494 ~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~ 573 (728)
T KOG0064|consen 494 GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQ 573 (728)
T ss_pred cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHH
Confidence 3556667778777 8899999999999999999999875332 22234554321 111 011
Q ss_pred --------c-----------cchhhccchhH-----------HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHH
Q 043119 597 --------S-----------KHMTAEQSSFM-----------IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLG 646 (792)
Q Consensus 597 --------~-----------~~~~~~~s~f~-----------~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~ 646 (792)
. +.+....+.|. +|.++++.+--.-.+|...+|||-++..++.---.+
T Consensus 574 ~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i-- 651 (728)
T KOG0064|consen 574 MKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKI-- 651 (728)
T ss_pred HHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHH--
Confidence 0 00111122221 466676666655789999999999999988533333
Q ss_pred HHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 647 GTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 647 ~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+..... |.+.|-+||-+.+..
T Consensus 652 --~~~ak~~--gi~llsithrpslwk 673 (728)
T KOG0064|consen 652 --FQAAKDA--GISLLSITHRPSLWK 673 (728)
T ss_pred --HHHHHhc--CceEEEeecCccHHH
Confidence 3333333 667889999998875
No 419
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.34 E-value=4e-06 Score=86.05 Aligned_cols=50 Identities=14% Similarity=0.262 Sum_probs=35.2
Q ss_pred hCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 620 QATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 620 ~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
...+.+++||||+..++|..-...++ .++..+.+ ..-+|++||..++...
T Consensus 155 ~~~~~p~~ilDEvd~~LD~~~~~~l~-~~l~~~~~---~~Q~ii~Th~~~~~~~ 204 (220)
T PF02463_consen 155 RYKPSPFLILDEVDAALDEQNRKRLA-DLLKELSK---QSQFIITTHNPEMFED 204 (220)
T ss_dssp TCS--SEEEEESTTTTS-HHHHHHHH-HHHHHHTT---TSEEEEE-S-HHHHTT
T ss_pred cccccccccccccccccccccccccc-cccccccc---cccccccccccccccc
Confidence 35788999999999999998888875 45665553 3568999999998764
No 420
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.34 E-value=8.2e-06 Score=101.02 Aligned_cols=147 Identities=18% Similarity=0.198 Sum_probs=97.6
Q ss_pred CCcEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh-----hcC--ccccCCcee-
Q 043119 521 EPLLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS-----HIG--SFVPADAAT- 591 (792)
Q Consensus 521 ~~~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la-----q~g--~~vpa~~~~- 591 (792)
+..+.++++.-..-. .......+|++|+.+ |+.++|+||-|||||+||.++.+=.-+- -.| .|||++.--
T Consensus 516 ~~~i~i~~~sfsW~~-~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ 594 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDS-ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQ 594 (1381)
T ss_pred CceEEEeeeeEecCC-CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhh
Confidence 346777777655321 123458899999999 9999999999999999999764322111 112 366655321
Q ss_pred ---e-------eccc-------------------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCC
Q 043119 592 ---V-------GLTD-------------------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKG 635 (792)
Q Consensus 592 ---~-------~~~~-------------------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~g 635 (792)
+ ..+| +..-.+| -+.+++. +|++-+-+--.+.+++|||-|++.
T Consensus 595 ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErG-inLSGGQKqRIsLARAVY~~adIYLLDDplSA 673 (1381)
T KOG0054|consen 595 NGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERG-INLSGGQKQRISLARAVYQDADIYLLDDPLSA 673 (1381)
T ss_pred CCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCc-cCCcHhHHHHHHHHHHHhccCCEEEEcCcchh
Confidence 0 0111 1122222 2333344 444444434689999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 636 TLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 636 t~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.|..-|..|...++.-+.+ +.|+|++||.++...
T Consensus 674 VDahvg~~if~~ci~~~L~---~KT~ILVTHql~~L~ 707 (1381)
T KOG0054|consen 674 VDAHVGKHIFEECIRGLLR---GKTVILVTHQLQFLP 707 (1381)
T ss_pred hhHhhhHHHHHHHHHhhhc---CCEEEEEeCchhhhh
Confidence 9999999999888866654 469999999887654
No 421
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.31 E-value=3.1e-06 Score=102.31 Aligned_cols=130 Identities=16% Similarity=0.196 Sum_probs=84.8
Q ss_pred ccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHH---------------------HHHhhcCccccCCce----
Q 043119 537 TVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALI---------------------VFLSHIGSFVPADAA---- 590 (792)
Q Consensus 537 ~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~---------------------~~laq~g~~vpa~~~---- 590 (792)
.++..|.+|++++.. |+.++|+||.||||||.+-.+--. .+..|+|. |..+..
T Consensus 1000 RP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~l-VsQEP~LF~~ 1078 (1228)
T KOG0055|consen 1000 RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGL-VSQEPVLFNG 1078 (1228)
T ss_pred CCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcce-eccCchhhcc
Confidence 357899999999999 999999999999999998766211 12233332 222110
Q ss_pred ------eeec--cc-------------------------ccchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCC
Q 043119 591 ------TVGL--TD-------------------------SKHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGT 636 (792)
Q Consensus 591 ------~~~~--~~-------------------------~~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt 636 (792)
.+|. ++ ++.-.++ ..+++ +.||++.+-+...+|+++||||-++.+
T Consensus 1079 TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG-~QLSGGQKQRIAIARAilRnPkILLLDEATSAL 1157 (1228)
T KOG0055|consen 1079 TIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERG-VQLSGGQKQRIAIARAILRNPKILLLDEATSAL 1157 (1228)
T ss_pred cHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCccc-CcCCchHHHHHHHHHHHHcCCCeeeeeccchhh
Confidence 0110 00 1111111 22333 445666666667999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 637 LTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 637 ~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|+..-. +....++...+ +.|+|+++|-+...+
T Consensus 1158 DseSEr-vVQeALd~a~~---gRT~IvIAHRLSTIq 1189 (1228)
T KOG0055|consen 1158 DSESER-VVQEALDRAME---GRTTIVIAHRLSTIQ 1189 (1228)
T ss_pred hhhhHH-HHHHHHHHhhc---CCcEEEEecchhhhh
Confidence 985544 44556676665 569999999988764
No 422
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.28 E-value=6.1e-06 Score=94.94 Aligned_cols=61 Identities=23% Similarity=0.293 Sum_probs=49.9
Q ss_pred HHHHHHHHHHH---hCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 609 IDLHQVGMMLR---QATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 609 ~e~~~~~~~l~---~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+|-||++.+-. .++.+.|.|||||+.|+-+.|-..|. .++..|... |-+||++.|++++..
T Consensus 826 GEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl-~VL~rLvd~--GnTViVIEHNLdVIk 889 (935)
T COG0178 826 GEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLL-EVLHRLVDK--GNTVIVIEHNLDVIK 889 (935)
T ss_pred hHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHH-HHHHHHHhC--CCEEEEEecccceEe
Confidence 46666654443 45788999999999999999999996 588999986 569999999998864
No 423
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.25 E-value=3.1e-06 Score=89.98 Aligned_cols=66 Identities=12% Similarity=0.012 Sum_probs=50.1
Q ss_pred hhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 606 SFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 606 ~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
.|+++. ++++.+-..+-+|++|++|||++.+|-.-...+ ..+++.|.++ .+-.-||+|||+..+..
T Consensus 426 EFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQv-v~LLr~LQ~k-~~LsYLFISHDL~VvrA 492 (534)
T COG4172 426 EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQV-LDLLRDLQQK-HGLSYLFISHDLAVVRA 492 (534)
T ss_pred ccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHH-HHHHHHHHHH-hCCeEEEEeccHHHHHH
Confidence 455554 455555556789999999999999998766666 3577777765 36788999999998763
No 424
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.24 E-value=4.1e-06 Score=87.92 Aligned_cols=104 Identities=14% Similarity=0.221 Sum_probs=55.4
Q ss_pred cEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeeccc-------------ccchhhccchh-----HHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD-------------SKHMTAEQSSF-----MIDLHQV 614 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~-------------~~~~~~~~s~f-----~~e~~~~ 614 (792)
..++|.||||||||||+|.++...-...--..+.. ..+...| ...+....+-+ ...|..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g--~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~- 188 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRG--KKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMM- 188 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECC--EEeecchhHHHHHHHhcccccccccccccccccchHHHHHHH-
Confidence 47899999999999999998755432110000110 1111111 00000000000 112222
Q ss_pred HHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 615 GMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 615 ~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+-.+.+|+++|+|||++. ....++++.+. . +.++|++||+..+.+
T Consensus 189 ---~i~~~~P~villDE~~~~-------e~~~~l~~~~~-~--G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 189 ---LIRSMSPDVIVVDEIGRE-------EDVEALLEALH-A--GVSIIATAHGRDVED 233 (270)
T ss_pred ---HHHhCCCCEEEEeCCCcH-------HHHHHHHHHHh-C--CCEEEEEechhHHHH
Confidence 222358999999998742 11234555543 3 678999999877643
No 425
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.22 E-value=6.7e-06 Score=104.55 Aligned_cols=62 Identities=19% Similarity=0.180 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhCC---CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 609 IDLHQVGMMLRQAT---SQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 609 ~e~~~~~~~l~~~~---~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
+|.++++.+-.... .+.|+|||||+.|+++.|-..+. .+++.|.+. |.|+|++.|++++...
T Consensus 1703 GE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll-~~l~~L~~~--g~tvivieH~~~~i~~ 1767 (1809)
T PRK00635 1703 SEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALL-VQLRTLVSL--GHSVIYIDHDPALLKQ 1767 (1809)
T ss_pred hHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHH-HHHHHHHhc--CCeEEEEeCCHHHHHh
Confidence 46677665555443 46899999999999999999996 578889886 6799999999999763
No 426
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.21 E-value=2.4e-05 Score=87.06 Aligned_cols=128 Identities=13% Similarity=0.130 Sum_probs=84.5
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhc------------CccccCCce-eee--------c--
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHI------------GSFVPADAA-TVG--------L-- 594 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~------------g~~vpa~~~-~~~--------~-- 594 (792)
+..+-.+.++... |.-++||||||+|||.|+|.+|.+=...+. -.|||.+-. .+| +
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~ 526 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLK 526 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCc
Confidence 4455667888888 999999999999999999999877543221 135665432 111 1
Q ss_pred -cc--------cc---ch-----------hhcc---------chh-HHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHH
Q 043119 595 -TD--------SK---HM-----------TAEQ---------SSF-MIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDG 641 (792)
Q Consensus 595 -~~--------~~---~~-----------~~~~---------s~f-~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~ 641 (792)
.+ .+ .+ ..+. +.. -+|++|++.+--.-.+|.+.||||-++..+..--
T Consensus 527 ~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE 606 (659)
T KOG0060|consen 527 AEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVE 606 (659)
T ss_pred cccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHH
Confidence 00 00 00 0011 111 2688998888777799999999999998886332
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 642 IGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 642 ~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+ +-+.+.+. +.|.|-+.|-..|.+
T Consensus 607 ~~----~Yr~~r~~--giT~iSVgHRkSL~k 631 (659)
T KOG0060|consen 607 GA----LYRKCREM--GITFISVGHRKSLWK 631 (659)
T ss_pred HH----HHHHHHHc--CCeEEEeccHHHHHh
Confidence 22 33444454 678899999988865
No 427
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.19 E-value=8.4e-06 Score=77.69 Aligned_cols=60 Identities=8% Similarity=-0.029 Sum_probs=44.2
Q ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 611 LHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 611 ~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.++++.+-+..-+|+++|.||...++|..-+..|.. +.-+|.++ .|...|++|.++.+.+
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~N-L~LeLQek-~GiSyiYV~QhlG~iK 214 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLIN-LMLELQEK-QGISYIYVTQHIGMIK 214 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHH-HHHHHHHH-hCceEEEEechhhHhh
Confidence 344554444578999999999999999988888865 44455554 3677888888887764
No 428
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.16 E-value=4.8e-06 Score=86.81 Aligned_cols=48 Identities=21% Similarity=0.170 Sum_probs=34.9
Q ss_pred CCCC-eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhh
Q 043119 621 ATSQ-SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELL 671 (792)
Q Consensus 621 ~~~~-slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~ 671 (792)
+... +++++|||..+..|.-...++ .++..+.+. +.-+|+|||.+.+.
T Consensus 254 ~~~~~~illiDEpE~~LHp~~q~~l~-~~l~~~~~~--~~QviitTHSp~il 302 (303)
T PF13304_consen 254 AKKNGSILLIDEPENHLHPSWQRKLI-ELLKELSKK--NIQVIITTHSPFIL 302 (303)
T ss_dssp TTTT-SEEEEESSSTTSSHHHHHHHH-HHHHHTGGG--SSEEEEEES-GGG-
T ss_pred cCCCCeEEEecCCcCCCCHHHHHHHH-HHHHhhCcc--CCEEEEeCccchhc
Confidence 3444 999999999999998777775 455544442 46799999998875
No 429
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.11 E-value=8.2e-06 Score=84.12 Aligned_cols=115 Identities=14% Similarity=0.101 Sum_probs=59.3
Q ss_pred CcEEEEEcCCCCCchhHHHHH-HHHHHHhhcCccccCCcee---------eeccccc-----c-----hhhccchhHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQV-ALIVFLSHIGSFVPADAAT---------VGLTDSK-----H-----MTAEQSSFMIDL 611 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i-~~~~~laq~g~~vpa~~~~---------~~~~~~~-----~-----~~~~~s~f~~e~ 611 (792)
+.+++|+||||+||||+..++ +...--+.-+.|+..+... ++....+ . .....+.....-
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 103 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEKR 103 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHHHH
Confidence 789999999999999995444 4333223333444433211 1110000 0 000111111001
Q ss_pred HHHHHHHHhC--CCCeEEEEeCCCCCC----CHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhh
Q 043119 612 HQVGMMLRQA--TSQSLCLLDEFGKGT----LTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTEL 670 (792)
Q Consensus 612 ~~~~~~l~~~--~~~slvllDE~~~gt----~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l 670 (792)
..+..++... .+++++++|||+.+. |+.....+ ..+++.+.+. +.++ ++||+...
T Consensus 104 ~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l-~~~l~~l~~~--g~tv-i~t~~~~~ 164 (230)
T PRK08533 104 KFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDL-MAFFKRISSL--NKVI-ILTANPKE 164 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHH-HHHHHHHHhC--CCEE-EEEecccc
Confidence 1223333332 478999999999988 55444445 4466666554 4554 55665543
No 430
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=5.7e-06 Score=88.26 Aligned_cols=48 Identities=23% Similarity=0.187 Sum_probs=35.1
Q ss_pred hCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 620 QATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 620 ~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
..-+|.|++||||+..+|....+.+ =.||.- ...|.++++|+..+++.
T Consensus 427 LflEPTLLMLDEPTNHLDLNAVIWL----dNYLQg--WkKTLLIVSHDQgFLD~ 474 (807)
T KOG0066|consen 427 LFLEPTLLMLDEPTNHLDLNAVIWL----DNYLQG--WKKTLLIVSHDQGFLDS 474 (807)
T ss_pred HhcCceeeeecCCccccccceeeeh----hhHHhh--hhheeEEEecccchHHH
Confidence 3578999999999998887554433 345543 34689999999888753
No 431
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.00 E-value=2.3e-05 Score=75.68 Aligned_cols=114 Identities=19% Similarity=0.136 Sum_probs=60.8
Q ss_pred EEEEEcCCCCCchhHHHHHHHHHHHhhcC--ccccCCceeeec------------cc-ccchhhc-cchhHHHHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVALIVFLSHIG--SFVPADAATVGL------------TD-SKHMTAE-QSSFMIDLHQVGMM 617 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~~~~laq~g--~~vpa~~~~~~~------------~~-~~~~~~~-~s~f~~e~~~~~~~ 617 (792)
+++|+||+|+||||+++.++....- +.| .|+..+...-.. .+ ....... ......+..+....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAER 79 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHH
Confidence 3689999999999999998765533 111 122222111000 00 0000000 01111222334444
Q ss_pred HHhCCCCeEEEEeCCCCCCCHHH---------HHHHHHHHHHHHHhCCCCcEEEEEccChhh
Q 043119 618 LRQATSQSLCLLDEFGKGTLTED---------GIGLLGGTINYFVTCDVPPKVLVCTHLTEL 670 (792)
Q Consensus 618 l~~~~~~slvllDE~~~gt~~~~---------~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l 670 (792)
.....++.++++||+.+-.+... .......+.+...+. +.++++++|...-
T Consensus 80 ~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~--~~~vv~~~~~~~~ 139 (165)
T cd01120 80 LRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKG--GVTVIFTLQVPSG 139 (165)
T ss_pred HHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcC--CceEEEEEecCCc
Confidence 55567899999999995433321 123334455554433 6899999998754
No 432
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.00 E-value=2.6e-05 Score=87.24 Aligned_cols=138 Identities=19% Similarity=0.133 Sum_probs=90.3
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH---------------------Hhh
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF---------------------LSH 580 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~---------------------laq 580 (792)
.+.+++..++- ...|++|+.. |++++|.|-=|||+|-+++++.+..- +.+
T Consensus 263 ~l~v~~l~~~~--------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~ 334 (500)
T COG1129 263 VLEVRNLSGGG--------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334 (500)
T ss_pred EEEEecCCCCC--------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHc
Confidence 45566555442 2347888887 99999999999999999999976321 112
Q ss_pred cCccccCCceeeeccc-----------------------------------------ccchhhccchhHHHHHHHHHHHH
Q 043119 581 IGSFVPADAATVGLTD-----------------------------------------SKHMTAEQSSFMIDLHQVGMMLR 619 (792)
Q Consensus 581 ~g~~vpa~~~~~~~~~-----------------------------------------~~~~~~~~s~f~~e~~~~~~~l~ 619 (792)
--.|||.++..-+++- ..+.....++++++-||-.-+.+
T Consensus 335 Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlar 414 (500)
T COG1129 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLAR 414 (500)
T ss_pred CCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHH
Confidence 2247777665433222 00111123445555444333332
Q ss_pred -hCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccC-hhhh
Q 043119 620 -QATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHL-TELL 671 (792)
Q Consensus 620 -~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~-~~l~ 671 (792)
.+++|+++|||||+||.|.-....| +.++..+++. |..+|++|-+ .|+.
T Consensus 415 wL~~~p~vLilDEPTRGIDVGAK~eI-y~li~~lA~~--G~ail~iSSElpEll 465 (500)
T COG1129 415 WLATDPKVLILDEPTRGIDVGAKAEI-YRLIRELAAE--GKAILMISSELPELL 465 (500)
T ss_pred HHhcCCCEEEECCCCcCcccchHHHH-HHHHHHHHHC--CCEEEEEeCChHHHH
Confidence 3689999999999999999888888 6799999987 4566665555 4554
No 433
>PRK13695 putative NTPase; Provisional
Probab=97.99 E-value=5.2e-05 Score=74.73 Aligned_cols=64 Identities=9% Similarity=0.162 Sum_probs=37.0
Q ss_pred hCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh-cCCCCCCCceeEEEEE
Q 043119 620 QATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN-EGCLPKSERLKFYTMS 688 (792)
Q Consensus 620 ~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~-~~~~~~~~~v~~~~~~ 688 (792)
...++.++++||++ .++..+ .... ..+..+.+. +..+|+++|...... .+.+...+.+..+++.
T Consensus 93 ~l~~~~~lllDE~~-~~e~~~-~~~~-~~l~~~~~~--~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~ 157 (174)
T PRK13695 93 ALEEADVIIIDEIG-KMELKS-PKFV-KAVEEVLDS--EKPVIATLHRRSVHPFVQEIKSRPGGRVYELT 157 (174)
T ss_pred ccCCCCEEEEECCC-cchhhh-HHHH-HHHHHHHhC--CCeEEEEECchhhHHHHHHHhccCCcEEEEEc
Confidence 34689999999985 344444 2232 344445454 568999999865432 1123334455555553
No 434
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.98 E-value=3.6e-05 Score=81.56 Aligned_cols=44 Identities=16% Similarity=0.028 Sum_probs=30.4
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhh
Q 043119 621 ATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELL 671 (792)
Q Consensus 621 ~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~ 671 (792)
..+++++|+|||++++|+.....+. +.+.+. + .++++||+.+..
T Consensus 208 ~~~~~illlDEp~a~LD~~~~~~l~----~~l~~~--~-q~ii~~~~~~~~ 251 (270)
T cd03242 208 SGEYPVLLLDDVLAELDLGRQAALL----DAIEGR--V-QTFVTTTDLADF 251 (270)
T ss_pred hCCCcEEEEcCcchhcCHHHHHHHH----HHhhcC--C-CEEEEeCCchhc
Confidence 3688999999999999998877663 333332 2 356666655543
No 435
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.00021 Score=76.93 Aligned_cols=129 Identities=18% Similarity=0.155 Sum_probs=85.5
Q ss_pred cCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHH--------HHHh-------------hcCccccCCceee---
Q 043119 538 VDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALI--------VFLS-------------HIGSFVPADAATV--- 592 (792)
Q Consensus 538 ~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~--------~~la-------------q~g~~vpa~~~~~--- 592 (792)
+...+.+++++..+ |..+.++||.|+||||.+|.+--. .+.. -+| -||.+..-+
T Consensus 274 ~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg-~VPQDtvLFNDt 352 (497)
T COG5265 274 PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIG-IVPQDTVLFNDT 352 (497)
T ss_pred ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhC-cCcccceehhhh
Confidence 35788999999999 999999999999999999966311 1111 122 355543210
Q ss_pred -------eccc---------------------------ccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCH
Q 043119 593 -------GLTD---------------------------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLT 638 (792)
Q Consensus 593 -------~~~~---------------------------~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~ 638 (792)
+-.+ +..-..++---.+|.++++.+-....+|+++++||.++.+|+
T Consensus 353 i~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt 432 (497)
T COG5265 353 IAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDT 432 (497)
T ss_pred HHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhh
Confidence 0000 011111111112577777777666899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEccChhhh
Q 043119 639 EDGIGLLGGTINYFVTCDVPPKVLVCTHLTELL 671 (792)
Q Consensus 639 ~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~ 671 (792)
..-.+|- +.+..... +.|.+++-|-+...
T Consensus 433 ~te~~iq-~~l~~~~~---~rttlviahrlsti 461 (497)
T COG5265 433 HTEQAIQ-AALREVSA---GRTTLVIAHRLSTI 461 (497)
T ss_pred hHHHHHH-HHHHHHhC---CCeEEEEeehhhhc
Confidence 8888884 45666554 45888888987654
No 436
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.88 E-value=3.2e-05 Score=75.26 Aligned_cols=61 Identities=11% Similarity=0.167 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 610 DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 610 e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|.+.+-.+++.|..|.|+|-|||+...+|.....|.. ++..+.+. .+.++++++||+....
T Consensus 163 E~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifR-LLs~mNQn-~~TtILL~s~Dl~~is 223 (330)
T COG4170 163 ECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFR-LLSRLNQN-SNTTILLISHDLQMIS 223 (330)
T ss_pred cceeeeeehhhccCCceEeccCCCcccCccHHHHHHH-HHHHhhcc-CCceEEEEcccHHHHH
Confidence 3344444555688999999999999999999888864 66666654 4789999999988765
No 437
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.87 E-value=1.4e-05 Score=63.29 Aligned_cols=34 Identities=32% Similarity=0.647 Sum_probs=27.2
Q ss_pred cceeecCCCcEEEEEcCCCCCchhHHHHHHHHHH
Q 043119 544 NDTRIDNDGRINIITGPNYSGKSIYIKQVALIVF 577 (792)
Q Consensus 544 n~~~~~~~~~~~~ltGpN~~GKSt~lk~i~~~~~ 577 (792)
.++.++..|.+++|+|||||||||+|.++..+.+
T Consensus 15 ~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 15 ETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred eEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 4566665567999999999999999998865544
No 438
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.87 E-value=6e-05 Score=74.99 Aligned_cols=47 Identities=9% Similarity=0.041 Sum_probs=35.0
Q ss_pred CCCeEEEEeCCCCCCC---HHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhh
Q 043119 622 TSQSLCLLDEFGKGTL---TEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELL 671 (792)
Q Consensus 622 ~~~slvllDE~~~gt~---~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~ 671 (792)
.+++++++|||+...+ +.....+ ..++..+.+. +.++|+++|.....
T Consensus 94 ~~~~~lviD~~~~~~~~~~~~~~~~i-~~l~~~l~~~--g~tvi~v~~~~~~~ 143 (187)
T cd01124 94 FKAKRVVIDSVSGLLLMEQSTARLEI-RRLLFALKRF--GVTTLLTSEQSGLE 143 (187)
T ss_pred hCCCEEEEeCcHHHhhcChHHHHHHH-HHHHHHHHHC--CCEEEEEeccccCC
Confidence 5789999999999988 4434444 4566677664 67899999987753
No 439
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.83 E-value=0.0001 Score=68.69 Aligned_cols=113 Identities=17% Similarity=0.082 Sum_probs=55.7
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhh-cCccccCCceeeecccc---cchhh--ccchhHHHHHHHHHHHHhCCCCe
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSH-IGSFVPADAATVGLTDS---KHMTA--EQSSFMIDLHQVGMMLRQATSQS 625 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq-~g~~vpa~~~~~~~~~~---~~~~~--~~s~f~~e~~~~~~~l~~~~~~s 625 (792)
+..++|+||+|+||||+++.++....... ...++.++......... ..... ..+.-..........+ ....++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 80 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA-RKLKPD 80 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHH-HhcCCC
Confidence 46889999999999999998864443322 11122221111000000 00000 1111111222121111 122369
Q ss_pred EEEEeCCCCCCCHHHHHHHHH-----HHHHHHHhCCCCcEEEEEccC
Q 043119 626 LCLLDEFGKGTLTEDGIGLLG-----GTINYFVTCDVPPKVLVCTHL 667 (792)
Q Consensus 626 lvllDE~~~gt~~~~~~~l~~-----~~~~~l~~~~~~~~~l~~TH~ 667 (792)
++++||+.+-.+......... ........ ....+|.++|.
T Consensus 81 viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~ 125 (148)
T smart00382 81 VLILDEITSLLDAEQEALLLLLEELRLLLLLKSE--KNLTVILTTND 125 (148)
T ss_pred EEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhc--CCCEEEEEeCC
Confidence 999999999998876554422 01111122 24577888885
No 440
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.80 E-value=0.00014 Score=90.49 Aligned_cols=144 Identities=18% Similarity=0.169 Sum_probs=94.3
Q ss_pred CcEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH------------hhcC------
Q 043119 522 PLLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL------------SHIG------ 582 (792)
Q Consensus 522 ~~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l------------aq~g------ 582 (792)
+.|.+++..--+-+ .-..|.+++++... ++=++|+|.-||||||++.++--++-. +++|
T Consensus 1137 G~I~f~~~~~RYrp--~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRs 1214 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRP--NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRS 1214 (1381)
T ss_pred CeEEEEEeEEEeCC--CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHh
Confidence 44666554332211 13578999999998 999999999999999999987655432 2233
Q ss_pred --ccccCCce--------eeeccc---------------------------ccchhhccchhHHHHHHHHHHHHh-CCCC
Q 043119 583 --SFVPADAA--------TVGLTD---------------------------SKHMTAEQSSFMIDLHQVGMMLRQ-ATSQ 624 (792)
Q Consensus 583 --~~vpa~~~--------~~~~~~---------------------------~~~~~~~~s~f~~e~~~~~~~l~~-~~~~ 624 (792)
+-+|.+.. .+.+++ ...+..+-+.|+.+.+|+-.+.++ ..+.
T Consensus 1215 rlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~s 1294 (1381)
T KOG0054|consen 1215 RLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKS 1294 (1381)
T ss_pred cCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccC
Confidence 23455532 122332 001233456788888886655544 5888
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhh
Q 043119 625 SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELL 671 (792)
Q Consensus 625 slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~ 671 (792)
.+++|||.+++.|+..=.-|-..+-+.++ .||+|.+-|-+.-.
T Consensus 1295 kILvLDEATAsVD~~TD~lIQ~tIR~~F~----dcTVltIAHRl~TV 1337 (1381)
T KOG0054|consen 1295 KILVLDEATASVDPETDALIQKTIREEFK----DCTVLTIAHRLNTV 1337 (1381)
T ss_pred CEEEEecccccCChHHHHHHHHHHHHHhc----CCeEEEEeeccchh
Confidence 99999999999999654444333334343 57999999987654
No 441
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.78 E-value=9.5e-05 Score=76.62 Aligned_cols=116 Identities=12% Similarity=0.116 Sum_probs=60.9
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHH-hhcCccccCCceeeecc--------c-ccchhh-----------ccchhHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFL-SHIGSFVPADAATVGLT--------D-SKHMTA-----------EQSSFMID 610 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~l-aq~g~~vpa~~~~~~~~--------~-~~~~~~-----------~~s~f~~e 610 (792)
|.+++|+||+|+|||||..+++.-... +.-+.|+..+...-.+. | .+.... ..+.....
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~ 104 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWNSTL 104 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccCcch
Confidence 889999999999999999998644322 33344554433210000 0 000000 01111112
Q ss_pred HHHHHHHH-HhC--CCCeEEEEeCCCCCCC---HHHHHHHHHHHHHHHHhCCCCcEEEEEccChhh
Q 043119 611 LHQVGMML-RQA--TSQSLCLLDEFGKGTL---TEDGIGLLGGTINYFVTCDVPPKVLVCTHLTEL 670 (792)
Q Consensus 611 ~~~~~~~l-~~~--~~~slvllDE~~~gt~---~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l 670 (792)
+.++...+ ... .+++++++|||+...+ ..+-..+.. .+..+.+. +.++++++|....
T Consensus 105 ~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~-~l~~l~~~--g~tvllt~~~~~~ 167 (234)
T PRK06067 105 ANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLT-EAKNLVDL--GKTILITLHPYAF 167 (234)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHH-HHHHHHhC--CCEEEEEecCCcC
Confidence 22222222 222 4889999999995543 333222222 23444444 5788999997654
No 442
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.70 E-value=0.00019 Score=72.27 Aligned_cols=105 Identities=16% Similarity=0.196 Sum_probs=53.4
Q ss_pred cEEEEEcCCCCCchhHHHHHHHHHHHhhcCccc----cCCce---eeecccccchhhccchhHHHHHHHHHHHHhCCCCe
Q 043119 553 RINIITGPNYSGKSIYIKQVALIVFLSHIGSFV----PADAA---TVGLTDSKHMTAEQSSFMIDLHQVGMMLRQATSQS 625 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~v----pa~~~---~~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~~~~s 625 (792)
.+++|+||+||||||+++.+.....-...|..+ |.+.. ...++..+.......+|... ++.++ ..+|+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~---i~~aL--r~~pd 76 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENA---LKAAL--RQDPD 76 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHH---HHHHh--cCCcC
Confidence 378999999999999999764332211111111 11100 00000000111112233321 23333 24789
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 626 LCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 626 lvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
++++||+. |+.. + ..+++. +.. +..++.++|..+..+
T Consensus 77 ~ii~gEir---d~e~---~-~~~l~~-a~~--G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 77 VILVGEMR---DLET---I-RLALTA-AET--GHLVMSTLHTNSAAK 113 (198)
T ss_pred EEEEcCCC---CHHH---H-HHHHHH-HHc--CCEEEEEecCCcHHH
Confidence 99999984 4432 2 334443 343 567999999876543
No 443
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=6.5e-05 Score=82.63 Aligned_cols=58 Identities=16% Similarity=0.086 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 610 DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 610 e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
+..+++.+.....+|-|++||||++-+|...--||+.|+ ..- +..|+++||+.+++..
T Consensus 487 QKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al----~~F--~GGVv~VSHd~~fi~~ 544 (582)
T KOG0062|consen 487 QKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKAL----KNF--NGGVVLVSHDEEFISS 544 (582)
T ss_pred chhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHH----Hhc--CCcEEEEECcHHHHhh
Confidence 345667666677899999999999988876666665443 332 2358999999999874
No 444
>PRK09183 transposase/IS protein; Provisional
Probab=97.65 E-value=0.00016 Score=75.90 Aligned_cols=101 Identities=16% Similarity=0.189 Sum_probs=57.1
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCc---cccCCceeeecccccchhhccchhHHHHHHHHHHHHh-CCCCeEE
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGS---FVPADAATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQ-ATSQSLC 627 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~---~vpa~~~~~~~~~~~~~~~~~s~f~~e~~~~~~~l~~-~~~~slv 627 (792)
+..++|+||+|+|||++...+|..... .|. |+++.. +......-.. ...+..++.. ...++++
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~--~G~~v~~~~~~~----------l~~~l~~a~~-~~~~~~~~~~~~~~~dlL 168 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVR--AGIKVRFTTAAD----------LLLQLSTAQR-QGRYKTTLQRGVMAPRLL 168 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeHHH----------HHHHHHHHHH-CCcHHHHHHHHhcCCCEE
Confidence 678899999999999999999765442 342 222111 0000000000 0012233322 4677899
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccCh
Q 043119 628 LLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLT 668 (792)
Q Consensus 628 llDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~ 668 (792)
++||++...-..++..+...++....++ + .+|++|+..
T Consensus 169 iiDdlg~~~~~~~~~~~lf~li~~r~~~--~-s~iiTsn~~ 206 (259)
T PRK09183 169 IIDEIGYLPFSQEEANLFFQVIAKRYEK--G-SMILTSNLP 206 (259)
T ss_pred EEcccccCCCChHHHHHHHHHHHHHHhc--C-cEEEecCCC
Confidence 9999986543334444445666665554 3 367777764
No 445
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.61 E-value=0.00035 Score=65.66 Aligned_cols=107 Identities=15% Similarity=0.157 Sum_probs=57.4
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeeccc-ccchhhccchhHHH--HHHHHHHHHhCCCCeEEE
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD-SKHMTAEQSSFMID--LHQVGMMLRQATSQSLCL 628 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~-~~~~~~~~s~f~~e--~~~~~~~l~~~~~~slvl 628 (792)
++.++|+||.|+||||+++.++.... +-+. .+-.++ ........-....+ .............+.+++
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~-------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 89 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF--RPGA-------PFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLF 89 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh--cCCC-------CeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEE
Confidence 56899999999999999998875554 1111 111111 00000000000000 112222333456789999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEccChh
Q 043119 629 LDEFGKGTLTEDGIGLLGGTINYFVTC---DVPPKVLVCTHLTE 669 (792)
Q Consensus 629 lDE~~~gt~~~~~~~l~~~~~~~l~~~---~~~~~~l~~TH~~~ 669 (792)
+||+... .+.....+. .+++.+... ..++.+|++|+...
T Consensus 90 lDe~~~~-~~~~~~~~~-~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 90 IDEIDSL-SRGAQNALL-RVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred EeChhhh-hHHHHHHHH-HHHHhcCceeccCCCeEEEEecCccc
Confidence 9998876 333333442 344444321 13567888888765
No 446
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=97.56 E-value=0.00015 Score=77.81 Aligned_cols=62 Identities=16% Similarity=0.119 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 609 IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 609 ~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+|+++.+.++....+.++.++|||-.=.|...+...+..+-+.+... +.+.+++.|+.-++.
T Consensus 460 gelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilha--kktafvVEhdfImaT 521 (592)
T KOG0063|consen 460 GELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHA--KKTAFVVEHDFIMAT 521 (592)
T ss_pred hhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhc--cchhhhhhhHHHHHH
Confidence 68899999999899999999999999999988877765444444443 468899999987765
No 447
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.54 E-value=0.00057 Score=63.44 Aligned_cols=104 Identities=15% Similarity=0.148 Sum_probs=57.6
Q ss_pred EEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhccchhHHHHHHHHHHHHhC---CCCeEEEEeC
Q 043119 555 NIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQA---TSQSLCLLDE 631 (792)
Q Consensus 555 ~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~---~~~slvllDE 631 (792)
++|+||.|+||||+.+.++... |.+ +-.++..... .++.......+..++..+ ..++++++||
T Consensus 1 ill~G~~G~GKT~l~~~la~~l-----~~~-------~~~i~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe 66 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL-----GFP-------FIEIDGSELI--SSYAGDSEQKIRDFFKKAKKSAKPCVLFIDE 66 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT-----TSE-------EEEEETTHHH--TSSTTHHHHHHHHHHHHHHHTSTSEEEEEET
T ss_pred CEEECcCCCCeeHHHHHHHhhc-----ccc-------cccccccccc--cccccccccccccccccccccccceeeeecc
Confidence 5799999999999999887542 211 1111111111 011222223333333332 2479999999
Q ss_pred CCCCCCHH------HHHHHHHHHHHHHHhCC---CCcEEEEEccChhhhh
Q 043119 632 FGKGTLTE------DGIGLLGGTINYFVTCD---VPPKVLVCTHLTELLN 672 (792)
Q Consensus 632 ~~~gt~~~------~~~~l~~~~~~~l~~~~---~~~~~l~~TH~~~l~~ 672 (792)
+-.-.... ....+...++..+.... .+..+|++|+..+...
T Consensus 67 ~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~ 116 (132)
T PF00004_consen 67 IDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKID 116 (132)
T ss_dssp GGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSC
T ss_pred chhcccccccccccccccccceeeecccccccccccceeEEeeCChhhCC
Confidence 86544332 33444455665555432 2357888898876654
No 448
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.46 E-value=0.00065 Score=73.37 Aligned_cols=98 Identities=17% Similarity=0.210 Sum_probs=54.0
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccc--------cc---h----hhccchhHHHHHH-HH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDS--------KH---M----TAEQSSFMIDLHQ-VG 615 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~--------~~---~----~~~~s~f~~e~~~-~~ 615 (792)
+..++|+||+||||||+++.++.. +|.....+.+-|. .. . ..+.+.+ .+.+ +.
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~---------~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~--~~~~~l~ 212 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDE---------IPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKV--TPKDLLQ 212 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcc---------CCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCcc--CHHHHHH
Confidence 678999999999999999976532 2222222222120 00 0 0011111 1112 22
Q ss_pred HHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 616 MMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 616 ~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+ ...++.+++||+.. .+ + +++++.+.. + ...++.++|......
T Consensus 213 ~~L--r~~pd~ii~gE~r~----~e---~-~~~l~a~~~-g-~~~~i~T~Ha~~~~~ 257 (308)
T TIGR02788 213 SCL--RMRPDRIILGELRG----DE---A-FDFIRAVNT-G-HPGSITTLHAGSPEE 257 (308)
T ss_pred HHh--cCCCCeEEEeccCC----HH---H-HHHHHHHhc-C-CCeEEEEEeCCCHHH
Confidence 222 47899999999984 12 2 345555543 2 345689999987543
No 449
>PRK06526 transposase; Provisional
Probab=97.41 E-value=0.00084 Score=70.17 Aligned_cols=104 Identities=14% Similarity=0.147 Sum_probs=56.6
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeC
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDE 631 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE 631 (792)
++-++|+||.|+|||++...++.-.. +.|..|-...+. .+++ + +... ... ..+...+....+.+|||+||
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~--~~g~~v~f~t~~-~l~~-~-l~~~---~~~--~~~~~~l~~l~~~dlLIIDD 167 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC--QAGHRVLFATAA-QWVA-R-LAAA---HHA--GRLQAELVKLGRYPLLIVDE 167 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH--HCCCchhhhhHH-HHHH-H-HHHH---Hhc--CcHHHHHHHhccCCEEEEcc
Confidence 45689999999999999999875443 334322110000 0000 0 0000 000 01222334456689999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccCh
Q 043119 632 FGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLT 668 (792)
Q Consensus 632 ~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~ 668 (792)
+|.--...+...+...++..-.++ + .+|++|+..
T Consensus 168 ~g~~~~~~~~~~~L~~li~~r~~~--~-s~IitSn~~ 201 (254)
T PRK06526 168 VGYIPFEPEAANLFFQLVSSRYER--A-SLIVTSNKP 201 (254)
T ss_pred cccCCCCHHHHHHHHHHHHHHHhc--C-CEEEEcCCC
Confidence 987543334444445566554443 2 377888764
No 450
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.39 E-value=0.00013 Score=64.99 Aligned_cols=32 Identities=19% Similarity=0.072 Sum_probs=27.4
Q ss_pred eccceeecCC-CcEEEEEcCCCCCchhHHHHHH
Q 043119 542 IPNDTRIDND-GRINIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 542 v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~ 573 (792)
+.++++++.. +++++|+||+||||||+++++.
T Consensus 4 aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 4 SLHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 4457778777 8999999999999999999854
No 451
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.31 E-value=0.00021 Score=78.13 Aligned_cols=85 Identities=15% Similarity=0.257 Sum_probs=48.2
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhc---CccccCCceeeeccc-ccch--hhccchhHH-HHHHHHHHHHhCCCC
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHI---GSFVPADAATVGLTD-SKHM--TAEQSSFMI-DLHQVGMMLRQATSQ 624 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~---g~~vpa~~~~~~~~~-~~~~--~~~~s~f~~-e~~~~~~~l~~~~~~ 624 (792)
+.+++++||||+||||++..++......+- -.++.++..+++-.+ -+.. ..+...... .-..+...+....+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 679999999999999999998876543321 124444444433322 0000 001111000 001233445556778
Q ss_pred eEEEEeCCCCCC
Q 043119 625 SLCLLDEFGKGT 636 (792)
Q Consensus 625 slvllDE~~~gt 636 (792)
++||+|++|+.-
T Consensus 217 DlVLIDTaG~~~ 228 (374)
T PRK14722 217 HMVLIDTIGMSQ 228 (374)
T ss_pred CEEEEcCCCCCc
Confidence 999999998763
No 452
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.28 E-value=0.00028 Score=79.68 Aligned_cols=84 Identities=17% Similarity=0.295 Sum_probs=47.7
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC---ccccCCceeeecccc-cchh--hccchhH-HHHHHHHHHHHhCCCC
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIG---SFVPADAATVGLTDS-KHMT--AEQSSFM-IDLHQVGMMLRQATSQ 624 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g---~~vpa~~~~~~~~~~-~~~~--~~~s~f~-~e~~~~~~~l~~~~~~ 624 (792)
+++++++||||+||||++..++....+.+.+ ..++++..+++..+. +... .+...+. .+-.+....+....+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~ 335 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNK 335 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCC
Confidence 6799999999999999999998765443322 245555544443330 0000 0111110 0111222334445667
Q ss_pred eEEEEeCCCCC
Q 043119 625 SLCLLDEFGKG 635 (792)
Q Consensus 625 slvllDE~~~g 635 (792)
.++++|.+|++
T Consensus 336 d~VLIDTaGr~ 346 (484)
T PRK06995 336 HIVLIDTIGMS 346 (484)
T ss_pred CeEEeCCCCcC
Confidence 89999997765
No 453
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.26 E-value=0.00032 Score=77.91 Aligned_cols=86 Identities=21% Similarity=0.347 Sum_probs=52.1
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhh---cCccccCCceeeecccc-----cchhhccchhH-HHHHHHHHHHHhCC
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSH---IGSFVPADAATVGLTDS-----KHMTAEQSSFM-IDLHQVGMMLRQAT 622 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq---~g~~vpa~~~~~~~~~~-----~~~~~~~s~f~-~e~~~~~~~l~~~~ 622 (792)
+++++++||||+||||+++.++...++.+ .+..+.++..+++..+. +.+ +.+... ..-..+...+....
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~il--Gvp~~~v~~~~dl~~al~~l~ 268 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLL--GVSVRSIKDIADLQLMLHELR 268 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHc--CCceecCCCHHHHHHHHHHhc
Confidence 78999999999999999999887544432 23345566555555541 111 111110 01122345555677
Q ss_pred CCeEEEEeCCCCCCCHHHH
Q 043119 623 SQSLCLLDEFGKGTLTEDG 641 (792)
Q Consensus 623 ~~slvllDE~~~gt~~~~~ 641 (792)
+..++++|.+ |.++.+.
T Consensus 269 ~~d~VLIDTa--Grsqrd~ 285 (420)
T PRK14721 269 GKHMVLIDTV--GMSQRDQ 285 (420)
T ss_pred CCCEEEecCC--CCCcchH
Confidence 8899999986 5555443
No 454
>PRK06921 hypothetical protein; Provisional
Probab=97.25 E-value=0.0016 Score=68.65 Aligned_cols=102 Identities=19% Similarity=0.199 Sum_probs=58.4
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHh--hcCccccCCceeeecccccchhhccchhHHHHHHHHHHHHhCCCCeEEEE
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLS--HIGSFVPADAATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLL 629 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~la--q~g~~vpa~~~~~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvll 629 (792)
+..++++||.|+|||.|+.+|+--..-. .-..|+++... ++ .+ ...| ......+....+.+||||
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l----~~--~l---~~~~----~~~~~~~~~~~~~dlLiI 183 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEG----FG--DL---KDDF----DLLEAKLNRMKKVEVLFI 183 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHH----HH--HH---HHHH----HHHHHHHHHhcCCCEEEE
Confidence 4578999999999999999887654321 12224332110 00 01 1112 122334555677899999
Q ss_pred eCCCC---CCC--HHHHHHHHHHHHHHHHhCCCCcEEEEEccCh
Q 043119 630 DEFGK---GTL--TEDGIGLLGGTINYFVTCDVPPKVLVCTHLT 668 (792)
Q Consensus 630 DE~~~---gt~--~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~ 668 (792)
|+++. |+. +.........++.+.... +..+|++|+..
T Consensus 184 DDl~~~~~g~e~~t~~~~~~lf~iin~R~~~--~k~tIitsn~~ 225 (266)
T PRK06921 184 DDLFKPVNGKPRATEWQIEQMYSVLNYRYLN--HKPILISSELT 225 (266)
T ss_pred eccccccCCCccCCHHHHHHHHHHHHHHHHC--CCCEEEECCCC
Confidence 99955 543 222233335677766554 23468888863
No 455
>PRK06893 DNA replication initiation factor; Validated
Probab=97.25 E-value=0.001 Score=68.58 Aligned_cols=94 Identities=20% Similarity=0.172 Sum_probs=55.3
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC-ccccCCceeeecccccchhhccchhHHHHHHHHHHHHhCCCCeEEEEe
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIG-SFVPADAATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLD 630 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g-~~vpa~~~~~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllD 630 (792)
+..+.|.||.|+|||++++.+|.-..-.... .|+++.. ...+.. .++....+.+++++|
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~--------------~~~~~~------~~~~~~~~~dlLilD 98 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK--------------SQYFSP------AVLENLEQQDLVCLD 98 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH--------------hhhhhH------HHHhhcccCCEEEEe
Confidence 3578999999999999999998654332111 1222210 011111 234445677999999
Q ss_pred CCCCCC-CHHHHHHHHHHHHHHHHhCCCCcEEEEEccCh
Q 043119 631 EFGKGT-LTEDGIGLLGGTINYFVTCDVPPKVLVCTHLT 668 (792)
Q Consensus 631 E~~~gt-~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~ 668 (792)
|+.... +......+ ..++....+. +.+++++|++.
T Consensus 99 Di~~~~~~~~~~~~l-~~l~n~~~~~--~~~illits~~ 134 (229)
T PRK06893 99 DLQAVIGNEEWELAI-FDLFNRIKEQ--GKTLLLISADC 134 (229)
T ss_pred ChhhhcCChHHHHHH-HHHHHHHHHc--CCcEEEEeCCC
Confidence 999865 33223344 4567776664 34555555554
No 456
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.20 E-value=0.00097 Score=69.08 Aligned_cols=105 Identities=15% Similarity=0.143 Sum_probs=61.3
Q ss_pred cEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeCC
Q 043119 553 RINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEF 632 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~ 632 (792)
..+++.||.|+|||+++..++.-.. +.|..| ..+... +.+..-.++|...-.....++......+|++|||+
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~--~~g~~v----~~it~~--~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDi 171 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELL--LRGKSV----LIITVA--DIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEI 171 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH--hcCCeE----EEEEHH--HHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCC
Confidence 3678999999999999998876443 334222 111111 11111112221100112234555668899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccC
Q 043119 633 GKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHL 667 (792)
Q Consensus 633 ~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~ 667 (792)
|.-..+.....+...++.+-... ...+|++|..
T Consensus 172 g~~~~s~~~~~~l~~Ii~~Ry~~--~~~tiitSNl 204 (244)
T PRK07952 172 GVQTESRYEKVIINQIVDRRSSS--KRPTGMLTNS 204 (244)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhC--CCCEEEeCCC
Confidence 98776666666777788765442 2345677765
No 457
>PRK04296 thymidine kinase; Provisional
Probab=97.20 E-value=0.0031 Score=63.08 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=55.1
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCc--cccCCceeee---cccccchhhccchh-HHHHHHHHHHHH-hCCCC
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGS--FVPADAATVG---LTDSKHMTAEQSSF-MIDLHQVGMMLR-QATSQ 624 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~--~vpa~~~~~~---~~~~~~~~~~~s~f-~~e~~~~~~~l~-~~~~~ 624 (792)
|.+.++|||-|+||||++..++.-..-+..-+ +-|+-..+.+ +.. +. ......+ .....++...+. .....
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~-~l-g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVS-RI-GLSREAIPVSSDTDIFELIEEEGEKI 79 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEec-CC-CCcccceEeCChHHHHHHHHhhCCCC
Confidence 56899999999999999987765443322111 1122111111 111 00 0000000 000111111111 23467
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhh
Q 043119 625 SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTEL 670 (792)
Q Consensus 625 slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l 670 (792)
++|++||... .+. ..+ ..+++.+... +.+++++.++.+.
T Consensus 80 dvviIDEaq~-l~~---~~v-~~l~~~l~~~--g~~vi~tgl~~~~ 118 (190)
T PRK04296 80 DCVLIDEAQF-LDK---EQV-VQLAEVLDDL--GIPVICYGLDTDF 118 (190)
T ss_pred CEEEEEcccc-CCH---HHH-HHHHHHHHHc--CCeEEEEecCccc
Confidence 8999999832 222 123 3466776665 6789999888554
No 458
>PRK12377 putative replication protein; Provisional
Probab=97.18 E-value=0.0025 Score=66.16 Aligned_cols=104 Identities=20% Similarity=0.185 Sum_probs=60.4
Q ss_pred cEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeCC
Q 043119 553 RINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEF 632 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~ 632 (792)
..++|+||.|+|||.++.+|+.... +-|..| ..+...+ .+..-..+|... .....++......+||+|||+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~--~~g~~v----~~i~~~~--l~~~l~~~~~~~-~~~~~~l~~l~~~dLLiIDDl 172 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLL--AKGRSV----IVVTVPD--VMSRLHESYDNG-QSGEKFLQELCKVDLLVLDEI 172 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--HcCCCe----EEEEHHH--HHHHHHHHHhcc-chHHHHHHHhcCCCEEEEcCC
Confidence 3678999999999999999886554 334322 1111111 111001111100 012245666788999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccC
Q 043119 633 GKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHL 667 (792)
Q Consensus 633 ~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~ 667 (792)
|.--.+.....+...+++.-... ...+|++|.+
T Consensus 173 g~~~~s~~~~~~l~~ii~~R~~~--~~ptiitSNl 205 (248)
T PRK12377 173 GIQRETKNEQVVLNQIIDRRTAS--MRSVGMLTNL 205 (248)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhc--CCCEEEEcCC
Confidence 77654445556666777765543 2235777765
No 459
>PF13173 AAA_14: AAA domain
Probab=97.15 E-value=0.0022 Score=59.70 Aligned_cols=99 Identities=21% Similarity=0.328 Sum_probs=55.1
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCc-eeeecccccchhhccchhHHHHHHHHHHHHhC-CCCeEEEE
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADA-ATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQA-TSQSLCLL 629 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~-~~~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~-~~~slvll 629 (792)
+++++|+||-|+||||++++++.-.. +... ..+..-|.+. .....+ +. ...+++.. ..+.+|++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~--------~~~~~~yi~~~~~~~--~~~~~~--~~--~~~~~~~~~~~~~~i~i 67 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL--------PPENILYINFDDPRD--RRLADP--DL--LEYFLELIKPGKKYIFI 67 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc--------ccccceeeccCCHHH--HHHhhh--hh--HHHHHHhhccCCcEEEE
Confidence 47899999999999999998864333 1111 1122222111 111100 00 11122221 36899999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhh
Q 043119 630 DEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELL 671 (792)
Q Consensus 630 DE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~ 671 (792)
||+-.=-+. ...++.+.+......+++++......
T Consensus 68 DEiq~~~~~-------~~~lk~l~d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 68 DEIQYLPDW-------EDALKFLVDNGPNIKIILTGSSSSLL 102 (128)
T ss_pred ehhhhhccH-------HHHHHHHHHhccCceEEEEccchHHH
Confidence 998665332 23455555543346788888876655
No 460
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=97.15 E-value=0.0049 Score=72.36 Aligned_cols=111 Identities=15% Similarity=0.144 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhCC----CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhcCCCCCCCceeEE
Q 043119 610 DLHQVGMMLRQAT----SQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFY 685 (792)
Q Consensus 610 e~~~~~~~l~~~~----~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~~~~~~~~~v~~~ 685 (792)
|.+++..++..+. +++++|+|||++|.|+..+..+. ..+..+.+ +.++|++||++.++... + ..+
T Consensus 445 e~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~-~~l~~l~~---~~~vi~iTH~~~~~~~a-----d--~~~ 513 (563)
T TIGR00634 445 ELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIA-KKLAQLSE---RHQVLCVTHLPQVAAHA-----D--AHF 513 (563)
T ss_pred HHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHhc---CCEEEEEEChHHHHHhc-----C--eEE
Confidence 4555555544443 46999999999999999888885 46666654 46899999999887521 1 223
Q ss_pred EEEEeeccCCCCCCCceEEeEEeecCCCCCcHHHHHHHHcC---CCHHHHHHHHHHHH
Q 043119 686 TMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAG---VPAEVIKRAAYVLE 740 (792)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~~A~~~g---~p~~ii~~A~~~~~ 740 (792)
.+.-... +.-+ +.-..-..+.--=-++|||.| +.+.-++.|++++.
T Consensus 514 ~l~k~~~-------~~~t--~s~i~~L~~~~r~~EiArml~G~~~t~~~~~~A~~ll~ 562 (563)
T TIGR00634 514 KVEKEGL-------DGRT--ATRVRPLSGEERVAELARMLAGLEKSDLTLAHAQELLE 562 (563)
T ss_pred EEEEccC-------CCcE--EEEEEECCccHHHHHHHHHhCCCCccHHHHHHHHHHhc
Confidence 3321110 1111 221222344566679999994 45677888888753
No 461
>COG4637 Predicted ATPase [General function prediction only]
Probab=97.13 E-value=0.0038 Score=65.07 Aligned_cols=49 Identities=27% Similarity=0.220 Sum_probs=37.5
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 621 ATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 621 ~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
-.++.++++|||-.++-|.---+++. ....-+++ .-++++||-.+++..
T Consensus 288 p~~p~ll~ldEPE~sLHP~lL~~La~-~~~sAak~---sQv~VsTHS~rLl~~ 336 (373)
T COG4637 288 PRPPPLLLLDEPETSLHPDLLPALAE-LMRSAAKR---SQVIVSTHSPRLLNA 336 (373)
T ss_pred CCCCceeEecCcccccCHhHHHHHHH-HHHHhhcc---ceEEEEeCCHHHHhh
Confidence 36889999999999999976666654 44443443 369999999999874
No 462
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.13 E-value=0.00072 Score=74.13 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+.+++|+||+||||||+|+.+..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~ 144 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID 144 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998653
No 463
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.11 E-value=0.0017 Score=75.96 Aligned_cols=25 Identities=44% Similarity=0.531 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
+++++|+||+|+||||+++.++...
T Consensus 110 ~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 110 KRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999988543
No 464
>PRK08181 transposase; Validated
Probab=97.10 E-value=0.0021 Score=67.62 Aligned_cols=103 Identities=18% Similarity=0.175 Sum_probs=58.9
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeeccc-ccchhhccchhHHHHHHHHHHHHhCCCCeEEEEe
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD-SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLD 630 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~-~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllD 630 (792)
++-++|+||.|+|||-++..+|.-+.- .|..|-. +...+ ...+....+. ......+......+|+|||
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~--~g~~v~f----~~~~~L~~~l~~a~~~-----~~~~~~l~~l~~~dLLIID 174 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIE--NGWRVLF----TRTTDLVQKLQVARRE-----LQLESAIAKLDKFDLLILD 174 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHH--cCCceee----eeHHHHHHHHHHHHhC-----CcHHHHHHHHhcCCEEEEe
Confidence 446899999999999999988865542 2432210 00000 0001000000 1122344555678999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccCh
Q 043119 631 EFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLT 668 (792)
Q Consensus 631 E~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~ 668 (792)
|+|.-........+...++....++ + .+|++|+..
T Consensus 175 Dlg~~~~~~~~~~~Lf~lin~R~~~--~-s~IiTSN~~ 209 (269)
T PRK08181 175 DLAYVTKDQAETSVLFELISARYER--R-SILITANQP 209 (269)
T ss_pred ccccccCCHHHHHHHHHHHHHHHhC--C-CEEEEcCCC
Confidence 9987655444444545677765553 3 467887764
No 465
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.10 E-value=0.0013 Score=65.59 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
++.++|+|||||||||+++.++..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999987654
No 466
>PRK10869 recombination and repair protein; Provisional
Probab=97.08 E-value=0.0054 Score=71.43 Aligned_cols=112 Identities=15% Similarity=0.143 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhC----CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhcCCCCCCCceeE
Q 043119 609 IDLHQVGMMLRQA----TSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKF 684 (792)
Q Consensus 609 ~e~~~~~~~l~~~----~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~~~~~~~~~v~~ 684 (792)
+|+++++.++..+ .+++++|+|||.+|+|+..+..++ ..+..+.+ ++++|++||++.++... .
T Consensus 434 Ge~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~-~~l~~l~~---~~qvi~iTH~~~~~~~a---------d 500 (553)
T PRK10869 434 GELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVG-KLLRQLGE---STQVMCVTHLPQVAGCG---------H 500 (553)
T ss_pred HHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHhc---CCEEEEEecCHHHHHhC---------C
Confidence 3556666555544 367999999999999998888875 46666654 46899999999987421 1
Q ss_pred EEEEEeeccCCCCCCCceEEeEEeecCCCCCcHHHHHHHHcC---CCHHHHHHHHHHHH
Q 043119 685 YTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAG---VPAEVIKRAAYVLE 740 (792)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~~A~~~g---~p~~ii~~A~~~~~ 740 (792)
.|+.+.... + +. -+|.-..-..+.--=-++|+|.| +.+.-+..|++++.
T Consensus 501 ~~~~v~k~~----~-~~--~t~s~i~~L~~~~R~~EiARMl~G~~~t~~~~~~A~eLl~ 552 (553)
T PRK10869 501 QHFFVSKET----D-GG--MTETHMQPLDKKARLQELARLLGGSEVTRNTLANAKELLA 552 (553)
T ss_pred EEEEEeccc----c-CC--eeeEEEEECChhHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Confidence 233322111 0 11 12222222345667789999994 46777889988764
No 467
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.07 E-value=0.00069 Score=80.04 Aligned_cols=85 Identities=16% Similarity=0.239 Sum_probs=52.1
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC---ccccCCceeeeccc-ccchh--hccchhH-HHHHHHHHHHHhCCCC
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIG---SFVPADAATVGLTD-SKHMT--AEQSSFM-IDLHQVGMMLRQATSQ 624 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g---~~vpa~~~~~~~~~-~~~~~--~~~s~f~-~e~~~~~~~l~~~~~~ 624 (792)
+++++++||||+||||++..++......+-+ ..+.++..+++..+ -+... .+...+. ..-..+...+....+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 7899999999999999999988765433211 24566665555444 00000 0111110 1223455666667778
Q ss_pred eEEEEeCCCCCC
Q 043119 625 SLCLLDEFGKGT 636 (792)
Q Consensus 625 slvllDE~~~gt 636 (792)
++||+|=+|+.-
T Consensus 265 D~VLIDTAGRs~ 276 (767)
T PRK14723 265 HLVLIDTVGMSQ 276 (767)
T ss_pred CEEEEeCCCCCc
Confidence 999999888653
No 468
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.04 E-value=0.006 Score=68.56 Aligned_cols=126 Identities=16% Similarity=0.049 Sum_probs=68.4
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCcccc-CCce-eee-----cccccc--------hhhcc
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVP-ADAA-TVG-----LTDSKH--------MTAEQ 604 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vp-a~~~-~~~-----~~~~~~--------~~~~~ 604 (792)
-+-+++ +... |+.++|.|+||+||||++++++...- +..|.+.- .++. .+. ..+... ...+.
T Consensus 147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~-~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~ 224 (438)
T PRK07721 147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS-ADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ 224 (438)
T ss_pred hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC-CCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence 344555 6666 99999999999999999998875431 11111100 0000 000 000000 00111
Q ss_pred chhHHHH-----HHHHHHHHhCCCCeEEEEe-----------------CC--CCCCCHHHHHHHHHHHHHHHHhCCCCc-
Q 043119 605 SSFMIDL-----HQVGMMLRQATSQSLCLLD-----------------EF--GKGTLTEDGIGLLGGTINYFVTCDVPP- 659 (792)
Q Consensus 605 s~f~~e~-----~~~~~~l~~~~~~slvllD-----------------E~--~~gt~~~~~~~l~~~~~~~l~~~~~~~- 659 (792)
|...... ..++.-++....+-|+++| || ++|.||.-...+ ..+++.+.....|.
T Consensus 225 ~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l-~~ller~~~~~~GsI 303 (438)
T PRK07721 225 PALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAIL-PKLLERTGTNASGSI 303 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHH-HHHHHHhcCCCCCCe
Confidence 1111100 1123333344677888999 53 568888665555 56888876422354
Q ss_pred ----EEEEEccChh
Q 043119 660 ----KVLVCTHLTE 669 (792)
Q Consensus 660 ----~~l~~TH~~~ 669 (792)
++++.||+++
T Consensus 304 T~~~TVlv~~hdm~ 317 (438)
T PRK07721 304 TAFYTVLVDGDDMN 317 (438)
T ss_pred eeEEEEEEECCCCC
Confidence 8899999986
No 469
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.00 E-value=0.0034 Score=65.23 Aligned_cols=27 Identities=30% Similarity=0.456 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFL 578 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~l 578 (792)
|.+.+|+||.|+|||||.-+++..+..
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~ 27 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMAL 27 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhc
Confidence 457899999999999999999877653
No 470
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.99 E-value=0.0054 Score=65.96 Aligned_cols=99 Identities=15% Similarity=0.179 Sum_probs=59.8
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhccchhHHHHH------HHHHHHHhCCCCe
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDLH------QVGMMLRQATSQS 625 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~~s~f~~e~~------~~~~~l~~~~~~s 625 (792)
++-+.|+||.|.|||.++.++|--.. +-|..|. ...+ +.|..++. .....+......+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~~v~--~~~~------------~~l~~~lk~~~~~~~~~~~l~~l~~~d 219 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELA--KKGVSST--LLHF------------PEFIRELKNSISDGSVKEKIDAVKEAP 219 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCEE--EEEH------------HHHHHHHHHHHhcCcHHHHHHHhcCCC
Confidence 45688999999999999998875544 4453221 0111 11112221 1234555677899
Q ss_pred EEEEeCCCCCCCHH-HHHHHHHHHHHHHHhCCCCcEEEEEccCh
Q 043119 626 LCLLDEFGKGTLTE-DGIGLLGGTINYFVTCDVPPKVLVCTHLT 668 (792)
Q Consensus 626 lvllDE~~~gt~~~-~~~~l~~~~~~~l~~~~~~~~~l~~TH~~ 668 (792)
|++|||+|.-.-+. .+..+...++++-... +..+||+|.+.
T Consensus 220 lLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~--~~~ti~TSNl~ 261 (306)
T PRK08939 220 VLMLDDIGAEQMSSWVRDEVLGVILQYRMQE--ELPTFFTSNFD 261 (306)
T ss_pred EEEEecCCCccccHHHHHHHHHHHHHHHHHC--CCeEEEECCCC
Confidence 99999999875443 3435656666665332 23567888763
No 471
>PRK08116 hypothetical protein; Validated
Probab=96.95 E-value=0.005 Score=64.98 Aligned_cols=107 Identities=18% Similarity=0.136 Sum_probs=57.1
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhccchhHHH-HHHHHHHHHhCCCCeEEEEe
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMID-LHQVGMMLRQATSQSLCLLD 630 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~~s~f~~e-~~~~~~~l~~~~~~slvllD 630 (792)
+..++|.||.|+|||.|+.+|+--..- + |..|- .+... +.+..-.++|... -.....++....+.+|++||
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~-~-~~~v~----~~~~~--~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviD 185 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIE-K-GVPVI----FVNFP--QLLNRIKSTYKSSGKEDENEIIRSLVNADLLILD 185 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH-c-CCeEE----EEEHH--HHHHHHHHHHhccccccHHHHHHHhcCCCEEEEe
Confidence 346899999999999999987654432 2 42221 11110 1011101111100 00122344555677899999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccCh
Q 043119 631 EFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLT 668 (792)
Q Consensus 631 E~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~ 668 (792)
++|.--.+.........++...... +..+|++|...
T Consensus 186 Dlg~e~~t~~~~~~l~~iin~r~~~--~~~~IiTsN~~ 221 (268)
T PRK08116 186 DLGAERDTEWAREKVYNIIDSRYRK--GLPTIVTTNLS 221 (268)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHC--CCCEEEECCCC
Confidence 9976433333344445677766554 33467777654
No 472
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.95 E-value=0.00099 Score=70.93 Aligned_cols=81 Identities=20% Similarity=0.326 Sum_probs=43.6
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHh---hcCccccCCceeeeccc-----ccchhhccchhHHHHHHHHHHHHhCCC
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLS---HIGSFVPADAATVGLTD-----SKHMTAEQSSFMIDLHQVGMMLRQATS 623 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~la---q~g~~vpa~~~~~~~~~-----~~~~~~~~s~f~~e~~~~~~~l~~~~~ 623 (792)
+++++|+||+|+||||++..++...... .--.+|.++..+.+..+ .+.+.-.. .....-..+...+.....
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~-~~~~~~~~l~~~l~~~~~ 272 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPV-KVARDPKELRKALDRLRD 272 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCce-eccCCHHHHHHHHHHccC
Confidence 6799999999999999998877554432 11224444443322221 00000000 000011234445555566
Q ss_pred CeEEEEeCCC
Q 043119 624 QSLCLLDEFG 633 (792)
Q Consensus 624 ~slvllDE~~ 633 (792)
.++||+|.+|
T Consensus 273 ~d~vliDt~G 282 (282)
T TIGR03499 273 KDLILIDTAG 282 (282)
T ss_pred CCEEEEeCCC
Confidence 7899999875
No 473
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.91 E-value=0.0068 Score=67.55 Aligned_cols=106 Identities=22% Similarity=0.238 Sum_probs=55.6
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhccchhHHH-HHHHHHHHHh--CCCCeEEE
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMID-LHQVGMMLRQ--ATSQSLCL 628 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~~s~f~~e-~~~~~~~l~~--~~~~slvl 628 (792)
.+-++|.||+|+|||++.|.++.- .+.. ...+ ..... .+.+..+ -..+..++.. ...|++|+
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~-----l~~~----fi~i--~~s~l----~~k~~ge~~~~lr~lf~~A~~~~P~ILf 243 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHH-----TTAT----FIRV--VGSEF----VQKYLGEGPRMVRDVFRLARENAPSIIF 243 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh-----cCCC----EEEE--ehHHH----HHHhcchhHHHHHHHHHHHHhcCCeEEE
Confidence 457889999999999999988753 1211 0111 10010 0111111 1122233322 46789999
Q ss_pred EeCCCC----------CCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEccChhhhhc
Q 043119 629 LDEFGK----------GTLTEDGIGLLGGTINYFVT--CDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 629 lDE~~~----------gt~~~~~~~l~~~~~~~l~~--~~~~~~~l~~TH~~~l~~~ 673 (792)
+||+-+ |.+.. ...+...++..+.. ...+..+|++||..+.++.
T Consensus 244 IDEID~i~~~r~~~~~~~d~~-~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDp 299 (398)
T PTZ00454 244 IDEVDSIATKRFDAQTGADRE-VQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 299 (398)
T ss_pred EECHhhhccccccccCCccHH-HHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCH
Confidence 999432 22222 22222334444322 1125678999999887664
No 474
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=96.91 E-value=0.00071 Score=67.82 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=23.0
Q ss_pred ceeecCCCcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 545 DTRIDNDGRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 545 ~~~~~~~~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
+++| +..+++|+||||+||||++.+|..+.
T Consensus 14 ~i~f--~~g~~vi~G~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 14 EIDF--SPGLNVIYGPNGSGKSTILEAIRYAL 43 (202)
T ss_dssp EEE----SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEc--CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3444 44699999999999999999886544
No 475
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]
Probab=96.90 E-value=0.00011 Score=84.16 Aligned_cols=205 Identities=6% Similarity=-0.185 Sum_probs=142.0
Q ss_pred EecccceeeecccC-ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCce--------eeecc
Q 043119 526 IQNGRHVLQEMTVD-TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAA--------TVGLT 595 (792)
Q Consensus 526 i~~~~hp~~~~~~~-~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~--------~~~~~ 595 (792)
-.+.+||++....+ .+.++++.+-.+ +----.||+|++|++|||.+||..+.+++++++||+.=. .+.-.
T Consensus 626 E~Qd~~~fIpNdv~le~~~~~~~IiTGpNMGGKSTyir~~Gvi~lmAQIGcfVPce~A~i~IvD~Il~RVGA~D~q~kG~ 705 (902)
T KOG0219|consen 626 EGQDEIPFIPNDVVLEKGKCRMLIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCESATISIVDGILTRVGAGDSQLKGI 705 (902)
T ss_pred hccccCCCCCCccccccCCceEEEEeCCCcCccchhhhhhhHHHHHHHhCCceehhhcCCchhhHHHhhhccchhhhcch
Confidence 35668999875443 577889887654 444568999999999999999999999999999886421 12222
Q ss_pred cccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhcCC
Q 043119 596 DSKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGC 675 (792)
Q Consensus 596 ~~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~~~ 675 (792)
.+.......++++.++..-..++......+....+|-|+++...++.-+++.....+... ..+-+...+|++..++...
T Consensus 706 STFM~Emleta~Ilr~at~~SliiiDELGRGTSt~DGfgiAwai~ehi~~ki~cf~lfAT-HfhElt~lae~~~~vKn~h 784 (902)
T KOG0219|consen 706 STFMAEMLETASILRRATKNSLIIIDELGRGTSTYDGFGIAWAIAEHIATKIGCFCLFAT-HFHELTKLAEQLPTVKNLH 784 (902)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEeccCCCceeccCccHHHHHHHHHHHHHhHhHHHHh-HHHHHHhhhhhhhhhhhhe
Confidence 244455556777777766655555567778899999999999999888888756665443 1445667888888876311
Q ss_pred CCCCCceeEEEEEEeeccCCCCCCCceEEeEEeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Q 043119 676 LPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNN 745 (792)
Q Consensus 676 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~~A~~~g~p~~ii~~A~~~~~~~~~~ 745 (792)
....+.+-.. --+--.|.-..|.+-.+++.++|...-.|.++.+++.+-++++...
T Consensus 785 --~~a~i~~~~~------------~llY~V~~Gv~d~SFGi~VA~~a~fp~~vie~A~~~~~ele~~~~~ 840 (902)
T KOG0219|consen 785 --VTAQIENDDI------------TLLYKVFEGVCDQSFGIHVAELVGFPEHVIEMAKQKAEELEDELVI 840 (902)
T ss_pred --eeeEecCcch------------hhHHHHhcccccCcchhhHHHHcCCChHHHHHHHHHHHHHHHHHhh
Confidence 0111111000 1122235556677788999999999999999999888877766543
No 476
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.86 E-value=0.0035 Score=70.99 Aligned_cols=84 Identities=21% Similarity=0.270 Sum_probs=48.0
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC---ccccCCceeeeccc-ccchhh--ccchhH-HHHHHHHHHHHhCCCC
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIG---SFVPADAATVGLTD-SKHMTA--EQSSFM-IDLHQVGMMLRQATSQ 624 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g---~~vpa~~~~~~~~~-~~~~~~--~~s~f~-~e~~~~~~~l~~~~~~ 624 (792)
|++++|+||+|+||||++..++.....-+.| .++.++..+++-.+ .+.... +..... ..-..+..++....+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 6799999999999999999887654443222 23444433332211 000000 000000 1122345556666778
Q ss_pred eEEEEeCCCCC
Q 043119 625 SLCLLDEFGKG 635 (792)
Q Consensus 625 slvllDE~~~g 635 (792)
++||+|.+|++
T Consensus 430 DLVLIDTaG~s 440 (559)
T PRK12727 430 KLVLIDTAGMG 440 (559)
T ss_pred CEEEecCCCcc
Confidence 99999999986
No 477
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.82 E-value=0.0032 Score=76.98 Aligned_cols=46 Identities=26% Similarity=0.289 Sum_probs=39.9
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 624 QSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 624 ~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+.++|||||++|+|+.+...+. .+++.+.+. +.++|++||+++.+.
T Consensus 508 ~~llILDEPtagLD~~~~~~L~-~~L~~L~~~--G~TVIvVeHd~~~i~ 553 (924)
T TIGR00630 508 GVLYVLDEPSIGLHQRDNERLI-NTLKRLRDL--GNTVIVVEHDEETIR 553 (924)
T ss_pred CcEEEEcCCccCCCHHHHHHHH-HHHHHHHhC--CCEEEEEECCHHHHh
Confidence 4899999999999999999985 577888775 679999999998764
No 478
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.79 E-value=0.0074 Score=67.36 Aligned_cols=113 Identities=16% Similarity=0.194 Sum_probs=58.6
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHh--hcCccccCCceeeeccc--ccchhhccchhHHHHHHHH------HHHHh-
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLS--HIGSFVPADAATVGLTD--SKHMTAEQSSFMIDLHQVG------MMLRQ- 620 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~la--q~g~~vpa~~~~~~~~~--~~~~~~~~s~f~~e~~~~~------~~l~~- 620 (792)
+++++||||.|+||||.++.++-..-.- +---+++..... .+. +.....-.++++..+.... ..+..
T Consensus 110 ~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~--~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~ 187 (634)
T KOG1970|consen 110 SRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPE--NLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMS 187 (634)
T ss_pred ceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccc--cccccchhcccchhhHHHHHHHHHHHHHhhchhhhc
Confidence 5799999999999999999766332110 111122221110 000 0001111223333322211 11211
Q ss_pred ----CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccC
Q 043119 621 ----ATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHL 667 (792)
Q Consensus 621 ----~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~ 667 (792)
.+.+.|+|+||+=.-.-..+...+ ..+++.+...+..|.|++.|--
T Consensus 188 g~~~~~~~~liLveDLPn~~~~d~~~~f-~evL~~y~s~g~~PlIf~iTd~ 237 (634)
T KOG1970|consen 188 GDDLRTDKKLILVEDLPNQFYRDDSETF-REVLRLYVSIGRCPLIFIITDS 237 (634)
T ss_pred ccccccCceEEEeeccchhhhhhhHHHH-HHHHHHHHhcCCCcEEEEEecc
Confidence 256679999998654433344444 5677766676667877777743
No 479
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.78 E-value=0.0033 Score=80.19 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+++++|+||+|.||||++|.++.
T Consensus 207 ~~vvgI~G~gGiGKTTLA~~l~~ 229 (1153)
T PLN03210 207 VRMVGIWGSSGIGKTTIARALFS 229 (1153)
T ss_pred eEEEEEEcCCCCchHHHHHHHHH
Confidence 78999999999999999999854
No 480
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.76 E-value=0.0041 Score=71.39 Aligned_cols=108 Identities=19% Similarity=0.271 Sum_probs=55.5
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccc-----cCC--ceeeecccccchhhccchhHHHHHHHHHH-HH----
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFV-----PAD--AATVGLTDSKHMTAEQSSFMIDLHQVGMM-LR---- 619 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~v-----pa~--~~~~~~~~~~~~~~~~s~f~~e~~~~~~~-l~---- 619 (792)
.++++||||.|+||||.+|.+|-- +|.-| |.. .......|........+.|...+.+.... +.
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~e-----lg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y 119 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKE-----LGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKY 119 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHH-----hCCeeEEecCCCCccccccccccccccccccccccchhhhhcccccccccc
Confidence 468999999999999999987633 23222 111 00000011000111112222222222111 11
Q ss_pred ---------hCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCC-cEEEEEcc
Q 043119 620 ---------QATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVP-PKVLVCTH 666 (792)
Q Consensus 620 ---------~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~-~~~l~~TH 666 (792)
..+++.+||++|+=.-..... .++-.++.+++.. +.. |.||++|.
T Consensus 120 ~~l~~~g~~~~~~~kvILVEDlPN~~~~~~-~~f~~~L~~~l~~-~~~~PlV~iiSe 174 (519)
T PF03215_consen 120 SSLSMSGSNSSSNKKVILVEDLPNVFHRDT-SRFREALRQYLRS-SRCLPLVFIISE 174 (519)
T ss_pred ccccccCCCcCCCceEEEeeccccccchhH-HHHHHHHHHHHHc-CCCCCEEEEEec
Confidence 124789999999875444333 5664444445544 335 89999983
No 481
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=96.76 E-value=0.0038 Score=76.50 Aligned_cols=67 Identities=16% Similarity=0.145 Sum_probs=48.3
Q ss_pred ccchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 603 EQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 603 ~~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+|........++.++.....+.++|||||++|+|+.+...+. .+++.+.+. +.++|++||+++.+.
T Consensus 489 ~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~-~~L~~L~~~--G~TVIvVeH~~~~i~ 555 (943)
T PRK00349 489 TLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLI-ETLKHLRDL--GNTLIVVEHDEDTIR 555 (943)
T ss_pred hCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHH-HHHHHHHhC--CCEEEEEeCCHHHHH
Confidence 4454444444444444322234899999999999999999985 577888765 679999999998764
No 482
>PRK08727 hypothetical protein; Validated
Probab=96.74 E-value=0.0069 Score=62.66 Aligned_cols=91 Identities=19% Similarity=0.193 Sum_probs=57.2
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCc---cccCCceeeecccccchhhccchhHHHHHHHHHHHHhCCCCeEEE
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGS---FVPADAATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQATSQSLCL 628 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~---~vpa~~~~~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvl 628 (792)
.+.++|+||-|+|||.++..++.-.. +.|. |+|+.. +. ..+..++......++|+
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~--~~~~~~~y~~~~~-----------------~~---~~~~~~~~~l~~~dlLi 98 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAE--QAGRSSAYLPLQA-----------------AA---GRLRDALEALEGRSLVA 98 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEeHHH-----------------hh---hhHHHHHHHHhcCCEEE
Confidence 34689999999999999998875432 2232 222111 11 11223455566778999
Q ss_pred EeCCCCCCC-HHHHHHHHHHHHHHHHhCCCCcEEEEEccC
Q 043119 629 LDEFGKGTL-TEDGIGLLGGTINYFVTCDVPPKVLVCTHL 667 (792)
Q Consensus 629 lDE~~~gt~-~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~ 667 (792)
+||+..-.. +.+...+. .++.+..+. +..+|++++.
T Consensus 99 IDDi~~l~~~~~~~~~lf-~l~n~~~~~--~~~vI~ts~~ 135 (233)
T PRK08727 99 LDGLESIAGQREDEVALF-DFHNRARAA--GITLLYTARQ 135 (233)
T ss_pred EeCcccccCChHHHHHHH-HHHHHHHHc--CCeEEEECCC
Confidence 999986653 33444443 466666554 4568898886
No 483
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.71 E-value=0.0086 Score=59.80 Aligned_cols=106 Identities=21% Similarity=0.328 Sum_probs=57.1
Q ss_pred CcE-EEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhc------cchhH-------HHHHH--HH
Q 043119 552 GRI-NIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAE------QSSFM-------IDLHQ--VG 615 (792)
Q Consensus 552 ~~~-~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~------~s~f~-------~e~~~--~~ 615 (792)
+.. ++|+||.++||||+||-++-+..-+.-+ +.| -+++++|+++--.+ +-.+. .+.+. +-
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~-~l~---kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmm 211 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQ-FLP---KKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMM 211 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhccccc-cCC---ceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHH
Confidence 344 7899999999999999998766543222 222 23444552211000 00000 00111 11
Q ss_pred HHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 616 MMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 616 ~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+++ ...|.++++||+|+-.|. .+ +++.+ +. |..++-+-|=-.+-+
T Consensus 212 maIr-sm~PEViIvDEIGt~~d~---~A----~~ta~-~~--GVkli~TaHG~~ied 257 (308)
T COG3854 212 MAIR-SMSPEVIIVDEIGTEEDA---LA----ILTAL-HA--GVKLITTAHGNGIED 257 (308)
T ss_pred HHHH-hcCCcEEEEeccccHHHH---HH----HHHHH-hc--CcEEEEeeccccHHH
Confidence 1222 345899999999875543 22 33333 33 567777778766544
No 484
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.66 E-value=0.0012 Score=65.89 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
|.+++|+|||||||||++|.++.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999998854
No 485
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=96.65 E-value=0.00089 Score=74.50 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=27.5
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHH
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIK 570 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk 570 (792)
.+..+++++.. |++++|+||+||||||+||
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 46678888888 9999999999999999999
No 486
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.65 E-value=0.0066 Score=66.30 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
.++++|+||||+||||++..+|..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~ 264 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQ 264 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Confidence 468999999999999999998854
No 487
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.65 E-value=0.0044 Score=68.53 Aligned_cols=84 Identities=21% Similarity=0.314 Sum_probs=47.2
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhh--cCc---cccCCceeeeccc-----ccchhhccchhHHHHHHHHHHHHhC
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSH--IGS---FVPADAATVGLTD-----SKHMTAEQSSFMIDLHQVGMMLRQA 621 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq--~g~---~vpa~~~~~~~~~-----~~~~~~~~s~f~~e~~~~~~~l~~~ 621 (792)
+.+++++||||+||||.+.-+|....+.. -|. .+.++..+.+-.+ .+.+.-....- .....+...+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~-~~~~~l~~~L~~~ 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAI-ESFKDLKEEITQS 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEee-CcHHHHHHHHHHh
Confidence 56999999999999999998875444331 122 2333332222211 00000000000 0113344555556
Q ss_pred CCCeEEEEeCCCCCC
Q 043119 622 TSQSLCLLDEFGKGT 636 (792)
Q Consensus 622 ~~~slvllDE~~~gt 636 (792)
.+.++||+|++|+..
T Consensus 253 ~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 253 KDFDLVLVDTIGKSP 267 (388)
T ss_pred CCCCEEEEcCCCCCc
Confidence 788999999999875
No 488
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.64 E-value=0.015 Score=59.81 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
|++++|+||+|+|||||..+++.-
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~ 43 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYK 43 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHH
Confidence 789999999999999999987643
No 489
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.63 E-value=0.0065 Score=65.88 Aligned_cols=103 Identities=18% Similarity=0.211 Sum_probs=59.0
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCc---cccCCceeeecccccchhhccchhHHHHHHHHHHHHhCCCCeEEE
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGS---FVPADAATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQATSQSLCL 628 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~---~vpa~~~~~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvl 628 (792)
+..++|.||.|.|||.|+.+||--.+ .-|. |+++... + +.+.........+..+ .+....+.+|+|
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~--~~g~~V~y~t~~~l----~--~~l~~~~~~~~~~~~~---~~~~l~~~DLLI 251 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL--DRGKSVIYRTADEL----I--EILREIRFNNDKELEE---VYDLLINCDLLI 251 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEEEHHHH----H--HHHHHHHhccchhHHH---HHHHhccCCEEE
Confidence 35789999999999999998886554 2232 2222111 0 0010000000111111 145556779999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccC
Q 043119 629 LDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHL 667 (792)
Q Consensus 629 lDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~ 667 (792)
||++|.--.+.........++.+....+ ..+|++|..
T Consensus 252 IDDlG~e~~t~~~~~~Lf~iin~R~~~~--k~tIiTSNl 288 (329)
T PRK06835 252 IDDLGTEKITEFSKSELFNLINKRLLRQ--KKMIISTNL 288 (329)
T ss_pred EeccCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEECCC
Confidence 9999887544444444567887776542 346777775
No 490
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.63 E-value=0.0041 Score=61.39 Aligned_cols=100 Identities=25% Similarity=0.318 Sum_probs=55.1
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCc---cccCCceeeecccccchhhccchhHHHHHHHHHHHHhCCCCeEEE
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGS---FVPADAATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQATSQSLCL 628 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~---~vpa~~~~~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvl 628 (792)
+.-++|+||.|.|||.+.-+++.-.+. -|. |+.... +++ + +....+. . .....+....+.+|+|
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~--~g~~v~f~~~~~----L~~-~-l~~~~~~--~---~~~~~~~~l~~~dlLi 113 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR--KGYSVLFITASD----LLD-E-LKQSRSD--G---SYEELLKRLKRVDLLI 113 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEEHHH----HHH-H-HHCCHCC--T---THCHHHHHHHTSSCEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc--CCcceeEeecCc----eec-c-ccccccc--c---chhhhcCccccccEec
Confidence 457899999999999998888765443 332 222111 111 0 0000000 0 0112233445679999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccC
Q 043119 629 LDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHL 667 (792)
Q Consensus 629 lDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~ 667 (792)
|||+|..........+...++..-.++ ++ +|++|..
T Consensus 114 lDDlG~~~~~~~~~~~l~~ii~~R~~~--~~-tIiTSN~ 149 (178)
T PF01695_consen 114 LDDLGYEPLSEWEAELLFEIIDERYER--KP-TIITSNL 149 (178)
T ss_dssp EETCTSS---HHHHHCTHHHHHHHHHT---E-EEEEESS
T ss_pred ccccceeeecccccccchhhhhHhhcc--cC-eEeeCCC
Confidence 999998766666666667777776553 34 5667765
No 491
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=96.62 E-value=0.0036 Score=63.84 Aligned_cols=34 Identities=6% Similarity=-0.128 Sum_probs=27.4
Q ss_pred hCCCCeEEEEeCCC-----CCCCHHHHHHHHHHHHHHHHh
Q 043119 620 QATSQSLCLLDEFG-----KGTLTEDGIGLLGGTINYFVT 654 (792)
Q Consensus 620 ~~~~~slvllDE~~-----~gt~~~~~~~l~~~~~~~l~~ 654 (792)
.+.+++++++|||+ .|.||.....+. .++..++.
T Consensus 167 l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~-~~~~~~~~ 205 (215)
T PTZ00132 167 LTNDPNLVFVGAPALAPEEIQIDPELVAQAE-KELQAAAN 205 (215)
T ss_pred HhhcccceecCCcccCCCccccCHHHHHHHH-HHHHHHhh
Confidence 35789999999999 999998888874 46666654
No 492
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.60 E-value=0.0014 Score=66.42 Aligned_cols=24 Identities=29% Similarity=0.239 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
|.+++|+|||||||||+++.++..
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999988754
No 493
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.60 E-value=0.007 Score=65.65 Aligned_cols=115 Identities=9% Similarity=0.019 Sum_probs=65.7
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhc-CccccCCcee------------eecccccc--hhhcc---chhHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHI-GSFVPADAAT------------VGLTDSKH--MTAEQ---SSFMIDLHQ 613 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~-g~~vpa~~~~------------~~~~~~~~--~~~~~---s~f~~e~~~ 613 (792)
...++++||.|.||||+.+.++....--+- +...||.... +..++... -..+. +--..++++
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~ 100 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVRE 100 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHH
Confidence 457899999999999999999876553221 1112443221 11111100 00111 112334455
Q ss_pred HHHHHHhC---CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhh
Q 043119 614 VGMMLRQA---TSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELL 671 (792)
Q Consensus 614 ~~~~l~~~---~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~ 671 (792)
+...+... .... |++||++.+.|+....++.. +++.... ++++|++||+.+.+
T Consensus 101 l~~~~~~~p~~~~~k-V~iiEp~~~Ld~~a~naLLk-~LEep~~---~~~~Ilvth~~~~l 156 (325)
T PRK08699 101 IIDNVYLTSVRGGLR-VILIHPAESMNLQAANSLLK-VLEEPPP---QVVFLLVSHAADKV 156 (325)
T ss_pred HHHHHhhCcccCCce-EEEEechhhCCHHHHHHHHH-HHHhCcC---CCEEEEEeCChHhC
Confidence 54444332 2334 45679999999988777754 5555432 46889999998743
No 494
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.60 E-value=0.0038 Score=70.75 Aligned_cols=105 Identities=15% Similarity=0.155 Sum_probs=56.2
Q ss_pred EEEEEcCCCCCchhHHHHHHHHHHHhhcC---ccccCCceeeecccccchhhccchhHHHHHHHHHHHHhCCCCeEEEEe
Q 043119 554 INIITGPNYSGKSIYIKQVALIVFLSHIG---SFVPADAATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLD 630 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~~~~laq~g---~~vpa~~~~~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllD 630 (792)
-++|+||.|+|||.|++.+|--..-.+-| .|++++...-.+.+ .+.. + .+.+..... ....+++++|
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~--~~~~--~----~~~~f~~~~--~~~~dvLlID 201 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVD--SMKE--G----KLNEFREKY--RKKVDVLLID 201 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHH--HHhc--c----cHHHHHHHH--HhcCCEEEEe
Confidence 47899999999999999988654322222 23333221100000 0000 0 111111111 1357899999
Q ss_pred CCCCCCCHHHH-HHHHHHHHHHHHhCCCCcEEEEEc-cChhhh
Q 043119 631 EFGKGTLTEDG-IGLLGGTINYFVTCDVPPKVLVCT-HLTELL 671 (792)
Q Consensus 631 E~~~gt~~~~~-~~l~~~~~~~l~~~~~~~~~l~~T-H~~~l~ 671 (792)
|+....+.... ..+ ..++..+.+. +..+|++| |.+...
T Consensus 202 Di~~l~~~~~~q~el-f~~~n~l~~~--~k~iIitsd~~p~~l 241 (440)
T PRK14088 202 DVQFLIGKTGVQTEL-FHTFNELHDS--GKQIVICSDREPQKL 241 (440)
T ss_pred chhhhcCcHHHHHHH-HHHHHHHHHc--CCeEEEECCCCHHHH
Confidence 99987654322 334 3466777665 34566665 665543
No 495
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.60 E-value=0.0053 Score=69.01 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
.+.++|.||+|+|||++.|.++..
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~e 240 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVANE 240 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 346889999999999999998763
No 496
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.60 E-value=0.0093 Score=60.49 Aligned_cols=38 Identities=24% Similarity=0.271 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHH-hhcCccccCCc
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFL-SHIGSFVPADA 589 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~l-aq~g~~vpa~~ 589 (792)
|+++.|+||+|+||||+..+++....- ..-..|+..+.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 889999999999999999988765532 23345666654
No 497
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.56 E-value=0.0089 Score=65.98 Aligned_cols=110 Identities=15% Similarity=0.203 Sum_probs=57.1
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHh-hcCccccCCcee---------eecccccchhhccchhHHHHHHHHHHHHhC
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLS-HIGSFVPADAAT---------VGLTDSKHMTAEQSSFMIDLHQVGMMLRQA 621 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~la-q~g~~vpa~~~~---------~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~ 621 (792)
|.+++|.|++|+|||||+.+++....-. .-..|+..+... +++.. +.+.--..+ .+.++...+. .
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~-~~l~l~~e~---~le~I~~~i~-~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGIST-ENLYLLAET---NLEDILASIE-E 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCc-ccEEEEccC---cHHHHHHHHH-h
Confidence 7899999999999999999998544322 122344433211 11100 000000011 1233333332 3
Q ss_pred CCCeEEEEeCCCC----CCC-----HHHHHHHHHHHHHHHHhCCCCcEEEEEccCh
Q 043119 622 TSQSLCLLDEFGK----GTL-----TEDGIGLLGGTINYFVTCDVPPKVLVCTHLT 668 (792)
Q Consensus 622 ~~~slvllDE~~~----gt~-----~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~ 668 (792)
.++++|++|++-. ..+ ...-..++..+.+...+. +.+++++.|-.
T Consensus 157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~--~itvilvghvt 210 (372)
T cd01121 157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKER--NIPIFIVGHVT 210 (372)
T ss_pred cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHc--CCeEEEEeecc
Confidence 5789999999732 111 122223333344444443 67888887853
No 498
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.53 E-value=0.0017 Score=63.95 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
|++++|+|||||||||+++.++..
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999999988764
No 499
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.53 E-value=0.0041 Score=69.93 Aligned_cols=86 Identities=19% Similarity=0.242 Sum_probs=46.1
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC---ccccCCceeeeccc-ccchh--hccchh-HHHHHHHHHHHHhCCCC
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIG---SFVPADAATVGLTD-SKHMT--AEQSSF-MIDLHQVGMMLRQATSQ 624 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g---~~vpa~~~~~~~~~-~~~~~--~~~s~f-~~e~~~~~~~l~~~~~~ 624 (792)
+++++++||+|+||||++-.+|....+.+-| .+|.++..+.+..+ .+... .+.... ...-.++...+....+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 6799999999999999998877654421222 23333332221111 00000 000000 00112344555556678
Q ss_pred eEEEEeCCCCCCC
Q 043119 625 SLCLLDEFGKGTL 637 (792)
Q Consensus 625 slvllDE~~~gt~ 637 (792)
++||+|-+|+.-.
T Consensus 301 DlVlIDt~G~~~~ 313 (424)
T PRK05703 301 DVILIDTAGRSQR 313 (424)
T ss_pred CEEEEeCCCCCCC
Confidence 9999999987543
No 500
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.51 E-value=0.013 Score=67.44 Aligned_cols=112 Identities=14% Similarity=0.168 Sum_probs=57.3
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCcee--eeccc---ccc--hhhccchhHHHHHHHHHHHH---hC
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAAT--VGLTD---SKH--MTAEQSSFMIDLHQVGMMLR---QA 621 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~--~~~~~---~~~--~~~~~s~f~~e~~~~~~~l~---~~ 621 (792)
+..++++||.|+||||+.+.++-....-. +.+.||.... ..+.+ .+. +......-..+++++..-+. ..
T Consensus 36 ~ha~Lf~GppGtGKTTlA~~lA~~l~c~~-~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~ 114 (504)
T PRK14963 36 GHAYLFSGPRGVGKTTTARLIAMAVNCSG-EDPKPCGECESCLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLR 114 (504)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccC-CCCCCCCcChhhHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhcccc
Confidence 35789999999999999998875543211 0111221110 00000 010 01110111233444433222 23
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChh
Q 043119 622 TSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTE 669 (792)
Q Consensus 622 ~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~ 669 (792)
.++.+||+||+.+=+ ..+ ..++++.+.+......+|++||..+
T Consensus 115 ~~~kVVIIDEad~ls----~~a-~naLLk~LEep~~~t~~Il~t~~~~ 157 (504)
T PRK14963 115 GGRKVYILDEAHMMS----KSA-FNALLKTLEEPPEHVIFILATTEPE 157 (504)
T ss_pred CCCeEEEEECccccC----HHH-HHHHHHHHHhCCCCEEEEEEcCChh
Confidence 578899999986432 222 2566777766433446677888754
Done!