Query 043119
Match_columns 792
No_of_seqs 332 out of 2919
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 23:02:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043119.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043119hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3thx_A DNA mismatch repair pro 100.0 1.4E-94 4.8E-99 867.1 75.2 714 3-777 145-898 (934)
2 1wb9_A DNA mismatch repair pro 100.0 2.6E-91 8.9E-96 830.7 70.1 656 2-744 130-798 (800)
3 3thx_B DNA mismatch repair pro 100.0 4.4E-91 1.5E-95 834.0 68.2 688 2-745 149-880 (918)
4 1ewq_A DNA mismatch repair pro 100.0 8.7E-87 3E-91 787.2 63.8 626 2-744 131-764 (765)
5 2o8b_B DNA mismatch repair pro 100.0 1.4E-86 4.7E-91 808.2 66.4 702 2-746 198-989 (1022)
6 4g1u_C Hemin import ATP-bindin 99.6 5.6E-16 1.9E-20 161.8 10.4 145 523-673 11-213 (266)
7 3tui_C Methionine import ATP-b 99.6 1.4E-15 4.7E-20 164.2 13.1 149 522-673 23-229 (366)
8 1vpl_A ABC transporter, ATP-bi 99.6 2.1E-15 7.2E-20 156.4 13.5 141 524-672 16-210 (256)
9 2pcj_A ABC transporter, lipopr 99.6 2.8E-15 9.6E-20 152.7 12.2 128 540-671 17-203 (224)
10 3tif_A Uncharacterized ABC tra 99.6 3.8E-15 1.3E-19 152.8 12.3 129 540-671 18-209 (235)
11 2olj_A Amino acid ABC transpor 99.6 4.3E-15 1.5E-19 154.6 12.7 142 523-672 24-223 (263)
12 3fvq_A Fe(3+) IONS import ATP- 99.6 5.9E-15 2E-19 159.2 13.2 143 524-672 5-203 (359)
13 1ji0_A ABC transporter; ATP bi 99.6 7.4E-15 2.5E-19 151.2 11.8 129 540-672 19-203 (240)
14 3gfo_A Cobalt import ATP-bindi 99.6 7E-15 2.4E-19 153.9 11.4 144 523-673 7-209 (275)
15 1b0u_A Histidine permease; ABC 99.6 1.2E-14 4.1E-19 151.5 11.9 141 524-672 7-217 (262)
16 3rlf_A Maltose/maltodextrin im 99.5 1E-14 3.5E-19 158.4 11.3 143 524-672 4-198 (381)
17 2nq2_C Hypothetical ABC transp 99.5 1.2E-14 4.2E-19 150.6 10.7 131 539-672 17-193 (253)
18 1g6h_A High-affinity branched- 99.5 1.4E-14 4.9E-19 150.7 11.2 141 524-672 8-217 (257)
19 1sgw_A Putative ABC transporte 99.5 9.2E-15 3.2E-19 147.3 9.1 140 523-672 10-197 (214)
20 2d2e_A SUFC protein; ABC-ATPas 99.5 2.3E-14 8E-19 148.4 12.0 130 540-672 16-207 (250)
21 2yyz_A Sugar ABC transporter, 99.5 2.6E-14 8.9E-19 154.7 12.4 130 540-672 16-198 (359)
22 2yz2_A Putative ABC transporte 99.5 3.7E-14 1.3E-18 148.2 12.5 129 540-672 20-202 (266)
23 2it1_A 362AA long hypothetical 99.5 3.2E-14 1.1E-18 154.1 10.9 130 540-672 16-198 (362)
24 3d31_A Sulfate/molybdate ABC t 99.5 5E-14 1.7E-18 152.0 12.2 128 542-672 15-192 (348)
25 1z47_A CYSA, putative ABC-tran 99.5 3.4E-14 1.2E-18 153.4 10.7 130 540-672 28-210 (355)
26 1g29_1 MALK, maltose transport 99.5 4.2E-14 1.5E-18 154.1 10.9 131 540-672 16-204 (372)
27 1v43_A Sugar-binding transport 99.5 6.1E-14 2.1E-18 152.5 11.9 142 524-672 12-206 (372)
28 2qi9_C Vitamin B12 import ATP- 99.5 2.3E-14 7.7E-19 148.0 8.0 128 541-672 14-197 (249)
29 2ixe_A Antigen peptide transpo 99.5 8.9E-14 3.1E-18 145.6 12.6 146 523-672 16-221 (271)
30 2ff7_A Alpha-hemolysin translo 99.5 5.8E-14 2E-18 145.0 10.6 128 540-672 22-208 (247)
31 1oxx_K GLCV, glucose, ABC tran 99.5 3.1E-14 1.1E-18 154.2 8.9 129 542-672 20-205 (353)
32 2onk_A Molybdate/tungstate ABC 99.5 5.2E-14 1.8E-18 144.6 9.8 127 543-672 15-191 (240)
33 2pze_A Cystic fibrosis transme 99.5 1.6E-14 5.6E-19 147.5 5.4 129 540-672 21-194 (229)
34 2zu0_C Probable ATP-dependent 99.5 1.2E-13 4.2E-18 144.3 12.1 143 523-672 20-228 (267)
35 2ihy_A ABC transporter, ATP-bi 99.5 4.3E-14 1.5E-18 148.4 8.6 142 523-672 21-227 (279)
36 2pjz_A Hypothetical protein ST 99.5 7.3E-14 2.5E-18 145.3 9.9 126 540-672 18-189 (263)
37 2cbz_A Multidrug resistance-as 99.5 3.4E-14 1.2E-18 145.9 5.5 131 540-672 18-193 (237)
38 1mv5_A LMRA, multidrug resista 99.4 8E-14 2.7E-18 143.8 6.9 128 540-672 15-202 (243)
39 2bbs_A Cystic fibrosis transme 99.4 4.9E-14 1.7E-18 148.6 5.0 128 541-672 52-223 (290)
40 2ghi_A Transport protein; mult 99.4 2.2E-13 7.7E-18 141.7 9.2 144 523-672 17-218 (260)
41 3nh6_A ATP-binding cassette SU 99.4 5.6E-13 1.9E-17 141.3 10.2 143 522-672 52-253 (306)
42 4gp7_A Metallophosphoesterase; 99.3 2.6E-13 9E-18 132.2 3.8 118 545-672 1-163 (171)
43 3gd7_A Fusion complex of cysti 99.3 1.1E-12 3.6E-17 143.7 8.0 144 522-672 18-218 (390)
44 3ozx_A RNAse L inhibitor; ATP 99.3 5.1E-12 1.8E-16 144.5 11.7 125 547-673 288-451 (538)
45 3bk7_A ABC transporter ATP-bin 99.3 5.3E-12 1.8E-16 146.4 11.5 127 545-673 374-537 (607)
46 3j16_B RLI1P; ribosome recycli 99.3 4.2E-12 1.4E-16 146.9 10.4 129 542-673 362-533 (608)
47 1yqt_A RNAse L inhibitor; ATP- 99.3 5.5E-12 1.9E-16 144.7 11.1 128 541-672 36-222 (538)
48 3bk7_A ABC transporter ATP-bin 99.3 9.5E-12 3.3E-16 144.2 12.4 128 541-672 106-292 (607)
49 1yqt_A RNAse L inhibitor; ATP- 99.3 1E-11 3.5E-16 142.4 11.7 126 545-673 304-467 (538)
50 3qf4_A ABC transporter, ATP-bi 99.3 1.8E-11 6.2E-16 142.3 13.5 143 523-672 341-542 (587)
51 4a82_A Cystic fibrosis transme 99.3 1.5E-11 5.1E-16 142.9 12.5 144 522-672 338-540 (578)
52 3b5x_A Lipid A export ATP-bind 99.2 6.2E-11 2.1E-15 137.9 17.1 143 523-672 341-543 (582)
53 3b60_A Lipid A export ATP-bind 99.2 9.6E-11 3.3E-15 136.2 17.9 143 523-672 341-543 (582)
54 3j16_B RLI1P; ribosome recycli 99.2 2.9E-11 9.9E-16 139.9 12.8 66 604-672 219-285 (608)
55 3qf4_B Uncharacterized ABC tra 99.2 9.8E-11 3.3E-15 136.5 16.4 143 523-673 354-555 (598)
56 3ux8_A Excinuclease ABC, A sub 99.2 3.1E-11 1.1E-15 142.8 12.1 66 604-672 200-268 (670)
57 2yl4_A ATP-binding cassette SU 99.2 7.5E-11 2.6E-15 137.5 14.4 143 524-672 342-546 (595)
58 3ozx_A RNAse L inhibitor; ATP 99.2 7E-11 2.4E-15 135.2 13.5 65 604-672 136-201 (538)
59 2iw3_A Elongation factor 3A; a 99.2 1.4E-10 5E-15 139.1 16.4 128 539-672 447-609 (986)
60 3ux8_A Excinuclease ABC, A sub 99.2 7E-11 2.4E-15 139.8 12.9 65 605-672 542-610 (670)
61 1ye8_A Protein THEP1, hypothet 99.1 7.6E-11 2.6E-15 115.3 8.4 113 554-672 2-147 (178)
62 4aby_A DNA repair protein RECN 99.1 5.9E-10 2E-14 124.3 13.9 111 609-739 299-413 (415)
63 3pih_A Uvrabc system protein A 99.1 5E-10 1.7E-14 134.4 13.0 65 605-672 804-872 (916)
64 3b85_A Phosphate starvation-in 99.1 2.6E-11 9E-16 121.6 1.7 111 552-673 22-163 (208)
65 2vf7_A UVRA2, excinuclease ABC 99.0 7.4E-10 2.5E-14 131.8 10.9 65 605-672 729-797 (842)
66 2iw3_A Elongation factor 3A; a 99.0 4.5E-10 1.5E-14 134.9 8.4 62 605-672 900-962 (986)
67 3qf7_A RAD50; ABC-ATPase, ATPa 99.0 2.1E-09 7.3E-14 117.3 12.6 48 622-672 302-349 (365)
68 2ehv_A Hypothetical protein PH 99.0 3.3E-10 1.1E-14 116.8 5.6 49 621-671 133-185 (251)
69 2ygr_A Uvrabc system protein A 99.0 2.6E-09 9E-14 127.7 13.4 65 605-672 862-930 (993)
70 2r6f_A Excinuclease ABC subuni 98.9 2.4E-09 8.1E-14 127.6 12.7 65 605-672 844-912 (972)
71 3g5u_A MCG1178, multidrug resi 98.9 1.3E-09 4.4E-14 137.3 9.5 144 523-672 387-589 (1284)
72 1e69_A Chromosome segregation 98.9 1.1E-08 3.8E-13 109.9 14.3 63 606-672 219-286 (322)
73 3qkt_A DNA double-strand break 98.9 6.5E-09 2.2E-13 112.5 12.1 55 615-672 264-318 (339)
74 3g5u_A MCG1178, multidrug resi 98.9 2E-09 6.9E-14 135.6 9.0 127 541-672 1047-1234(1284)
75 3ec2_A DNA replication protein 98.9 1.5E-09 5.3E-14 106.1 5.9 105 552-668 38-143 (180)
76 4f4c_A Multidrug resistance pr 98.8 3.5E-08 1.2E-12 124.6 17.9 145 522-672 414-617 (1321)
77 2npi_A Protein CLP1; CLP1-PCF1 98.8 2.1E-09 7.2E-14 120.4 5.2 117 545-669 130-299 (460)
78 1znw_A Guanylate kinase, GMP k 98.8 4.1E-10 1.4E-14 113.0 -0.8 36 539-576 8-44 (207)
79 4a74_A DNA repair and recombin 98.7 8.6E-09 2.9E-13 104.6 6.6 27 552-578 25-51 (231)
80 2eyu_A Twitching motility prot 98.7 3.4E-08 1.2E-12 102.5 10.1 112 542-671 16-136 (261)
81 4f4c_A Multidrug resistance pr 98.7 2.7E-08 9.3E-13 125.6 11.2 145 522-672 1075-1280(1321)
82 2pt7_A CAG-ALFA; ATPase, prote 98.7 5.2E-09 1.8E-13 112.6 3.7 111 542-671 160-278 (330)
83 1nlf_A Regulatory protein REPA 98.7 2.4E-08 8.1E-13 105.0 7.6 116 552-671 30-184 (279)
84 2w0m_A SSO2452; RECA, SSPF, un 98.7 3.8E-08 1.3E-12 99.9 8.5 114 552-669 23-169 (235)
85 1cr0_A DNA primase/helicase; R 98.6 4.2E-08 1.4E-12 104.0 8.7 124 542-668 24-197 (296)
86 2kjq_A DNAA-related protein; s 98.6 7.2E-08 2.5E-12 91.1 8.6 86 551-667 35-124 (149)
87 1tq4_A IIGP1, interferon-induc 98.6 2.3E-09 7.9E-14 118.0 -2.2 130 540-670 36-237 (413)
88 2cvh_A DNA repair and recombin 98.6 8.8E-08 3E-12 96.4 8.5 114 552-669 20-157 (220)
89 3jvv_A Twitching mobility prot 98.5 1.9E-07 6.4E-12 101.1 10.3 107 551-672 122-235 (356)
90 1tf7_A KAIC; homohexamer, hexa 98.5 1.5E-07 5E-12 108.0 8.2 128 540-671 25-188 (525)
91 3b9q_A Chloroplast SRP recepto 98.4 2.8E-07 9.5E-12 97.7 7.8 31 546-576 93-124 (302)
92 1tf7_A KAIC; homohexamer, hexa 98.4 4.6E-07 1.6E-11 103.8 8.5 111 552-668 281-417 (525)
93 2jeo_A Uridine-cytidine kinase 98.3 1.6E-06 5.4E-11 89.1 10.5 39 538-576 10-49 (245)
94 2og2_A Putative signal recogni 98.3 5.8E-07 2E-11 97.1 7.4 32 545-576 149-181 (359)
95 3szr_A Interferon-induced GTP- 98.3 4.8E-07 1.6E-11 105.3 7.1 49 622-671 145-199 (608)
96 1n0w_A DNA repair protein RAD5 98.3 6.6E-07 2.3E-11 91.4 7.4 27 552-578 24-50 (243)
97 1pzn_A RAD51, DNA repair and r 98.3 5.3E-07 1.8E-11 97.6 6.4 117 552-670 131-288 (349)
98 2i3b_A HCR-ntpase, human cance 98.3 4E-07 1.4E-11 89.5 4.6 26 552-577 1-26 (189)
99 3sop_A Neuronal-specific septi 98.3 3.4E-06 1.2E-10 87.9 11.0 25 554-578 4-28 (270)
100 1s96_A Guanylate kinase, GMP k 98.2 2.1E-06 7.1E-11 86.5 8.6 25 552-576 16-40 (219)
101 2ewv_A Twitching motility prot 98.2 3E-06 1E-10 92.5 9.4 104 552-670 136-246 (372)
102 2obl_A ESCN; ATPase, hydrolase 98.0 1.7E-06 5.6E-11 93.4 2.2 36 540-576 59-95 (347)
103 1sxj_E Activator 1 40 kDa subu 98.0 1.3E-05 4.3E-10 86.9 8.9 45 621-670 132-176 (354)
104 1htw_A HI0065; nucleotide-bind 97.9 2.6E-06 8.9E-11 81.1 1.8 37 540-576 20-57 (158)
105 1f2t_B RAD50 ABC-ATPase; DNA d 97.9 2.1E-05 7.3E-10 73.8 7.9 49 620-671 78-126 (148)
106 2dr3_A UPF0273 protein PH0284; 97.9 4.3E-05 1.5E-09 77.9 10.5 47 622-670 127-175 (247)
107 3lda_A DNA repair protein RAD5 97.8 1.6E-05 5.6E-10 87.1 6.8 27 552-578 178-204 (400)
108 2qnr_A Septin-2, protein NEDD5 97.8 2.9E-05 9.8E-10 82.2 8.3 38 626-669 130-168 (301)
109 1rj9_A FTSY, signal recognitio 97.8 2.5E-05 8.5E-10 82.6 6.8 25 552-576 102-126 (304)
110 2dpy_A FLII, flagellum-specifi 97.8 9.7E-06 3.3E-10 90.2 3.7 36 540-576 145-181 (438)
111 3e70_C DPA, signal recognition 97.8 6.3E-05 2.1E-09 80.3 9.7 25 552-576 129-153 (328)
112 2zr9_A Protein RECA, recombina 97.8 7.6E-05 2.6E-09 80.5 10.3 114 552-669 61-199 (349)
113 1z6g_A Guanylate kinase; struc 97.7 1.3E-05 4.5E-10 80.6 3.0 36 541-576 11-47 (218)
114 2yhs_A FTSY, cell division pro 97.7 4.8E-05 1.7E-09 84.7 6.9 33 544-576 284-317 (503)
115 2qag_C Septin-7; cell cycle, c 97.6 6.5E-06 2.2E-10 90.9 -0.2 32 540-576 24-55 (418)
116 1lw7_A Transcriptional regulat 97.6 1.4E-05 4.9E-10 87.0 2.2 25 552-576 170-194 (365)
117 2px0_A Flagellar biosynthesis 97.6 9.7E-05 3.3E-09 77.8 8.1 115 551-671 104-229 (296)
118 2v9p_A Replication protein E1; 97.6 1.8E-05 6.1E-10 83.4 2.1 47 541-588 114-161 (305)
119 2gza_A Type IV secretion syste 97.5 3.9E-05 1.3E-09 83.3 3.5 32 543-574 165-197 (361)
120 3lnc_A Guanylate kinase, GMP k 97.5 3.3E-05 1.1E-09 78.3 2.2 36 541-576 15-52 (231)
121 3tr0_A Guanylate kinase, GMP k 97.5 5.3E-05 1.8E-09 75.0 3.6 24 552-575 7-30 (205)
122 2z4s_A Chromosomal replication 97.5 0.00027 9.3E-09 78.8 9.7 104 552-668 130-237 (440)
123 3hr8_A Protein RECA; alpha and 97.3 0.00098 3.4E-08 71.7 12.0 113 552-667 61-197 (356)
124 3kta_A Chromosome segregation 97.3 0.00011 3.8E-09 71.2 4.1 32 544-575 18-49 (182)
125 2ce7_A Cell division protein F 97.3 0.00069 2.4E-08 75.9 10.5 105 554-673 51-169 (476)
126 3a00_A Guanylate kinase, GMP k 97.3 9.5E-05 3.3E-09 72.2 2.9 25 552-576 1-25 (186)
127 1ls1_A Signal recognition part 97.2 0.00052 1.8E-08 72.2 8.3 31 545-576 92-122 (295)
128 4ad8_A DNA repair protein RECN 97.2 0.00083 2.8E-08 76.6 10.6 110 610-739 402-515 (517)
129 1ixz_A ATP-dependent metallopr 97.2 0.00096 3.3E-08 68.3 9.5 105 555-673 52-169 (254)
130 1vma_A Cell division protein F 97.2 0.00066 2.3E-08 71.6 8.3 25 552-576 104-128 (306)
131 3c8u_A Fructokinase; YP_612366 97.2 0.00019 6.5E-09 71.4 3.8 26 552-577 22-47 (208)
132 3asz_A Uridine kinase; cytidin 97.2 0.00017 5.7E-09 71.7 3.2 25 552-576 6-30 (211)
133 3bos_A Putative DNA replicatio 97.1 0.00056 1.9E-08 68.9 7.0 96 552-667 52-147 (242)
134 1fnn_A CDC6P, cell division co 97.1 0.0008 2.7E-08 73.3 8.7 116 554-672 46-173 (389)
135 2x8a_A Nuclear valosin-contain 97.1 0.0011 3.6E-08 69.0 9.0 114 544-673 37-161 (274)
136 1lvg_A Guanylate kinase, GMP k 97.1 0.00018 6E-09 71.1 2.8 25 552-576 4-28 (198)
137 2w58_A DNAI, primosome compone 97.1 0.00035 1.2E-08 68.8 4.8 24 553-576 55-78 (202)
138 3euj_A Chromosome partition pr 97.1 0.00024 8.2E-09 79.4 3.9 35 543-577 20-54 (483)
139 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.0004 1.4E-08 65.2 4.5 26 551-576 22-47 (149)
140 1zp6_A Hypothetical protein AT 97.0 0.00023 7.9E-09 69.4 2.9 24 552-575 9-32 (191)
141 3pih_A Uvrabc system protein A 97.0 0.0011 3.6E-08 79.9 9.0 67 603-672 464-530 (916)
142 3aez_A Pantothenate kinase; tr 97.0 0.00032 1.1E-08 74.4 3.9 26 552-577 90-115 (312)
143 2r6f_A Excinuclease ABC subuni 97.0 0.0015 5.1E-08 78.2 9.5 46 624-672 525-570 (972)
144 2qag_B Septin-6, protein NEDD5 97.0 0.00022 7.4E-09 78.4 2.1 34 543-576 30-66 (427)
145 3b9p_A CG5977-PA, isoform A; A 97.0 0.0023 7.8E-08 67.1 10.0 23 552-574 54-76 (297)
146 2qby_A CDC6 homolog 1, cell di 97.0 0.0003 1E-08 76.5 3.2 119 552-672 45-177 (386)
147 1iy2_A ATP-dependent metallopr 96.9 0.0014 4.9E-08 68.1 8.1 21 555-575 76-96 (278)
148 2ius_A DNA translocase FTSK; n 96.9 0.00095 3.2E-08 75.1 7.0 25 552-576 167-191 (512)
149 2ygr_A Uvrabc system protein A 96.9 0.0018 6.3E-08 77.7 9.8 65 603-672 521-587 (993)
150 3kta_B Chromosome segregation 96.9 0.0026 8.8E-08 61.1 9.0 66 603-672 64-131 (173)
151 2bdt_A BH3686; alpha-beta prot 96.9 0.0003 1E-08 68.6 2.4 23 552-574 2-24 (189)
152 1kgd_A CASK, peripheral plasma 96.9 0.00041 1.4E-08 67.2 3.4 24 552-575 5-28 (180)
153 2vf7_A UVRA2, excinuclease ABC 96.9 0.0016 5.6E-08 77.5 9.1 50 620-672 394-445 (842)
154 1l8q_A Chromosomal replication 96.9 0.0022 7.5E-08 68.3 9.1 25 552-576 37-61 (324)
155 2r6a_A DNAB helicase, replicat 96.9 0.0018 6.1E-08 72.5 8.5 27 552-578 203-229 (454)
156 4eun_A Thermoresistant glucoki 96.8 0.0005 1.7E-08 67.8 3.4 25 552-576 29-53 (200)
157 1lv7_A FTSH; alpha/beta domain 96.8 0.0043 1.5E-07 63.5 10.6 22 554-575 47-68 (257)
158 1udx_A The GTP-binding protein 96.8 0.00035 1.2E-08 76.9 2.2 32 544-575 148-180 (416)
159 2j41_A Guanylate kinase; GMP, 96.8 0.00055 1.9E-08 67.5 3.4 24 552-575 6-29 (207)
160 3h4m_A Proteasome-activating n 96.8 0.0031 1.1E-07 65.5 9.3 108 552-672 51-170 (285)
161 3vaa_A Shikimate kinase, SK; s 96.8 0.00055 1.9E-08 67.4 3.1 38 538-575 10-48 (199)
162 2qm8_A GTPase/ATPase; G protei 96.8 0.00044 1.5E-08 74.2 2.3 35 543-577 45-80 (337)
163 1jbk_A CLPB protein; beta barr 96.7 0.0023 7.9E-08 61.5 7.1 115 552-670 43-163 (195)
164 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.0073 2.5E-07 63.5 11.2 24 552-575 123-146 (331)
165 2o5v_A DNA replication and rep 96.7 0.00091 3.1E-08 72.2 4.5 52 610-667 270-330 (359)
166 1njg_A DNA polymerase III subu 96.7 0.0055 1.9E-07 61.2 10.1 24 553-576 46-69 (250)
167 1sq5_A Pantothenate kinase; P- 96.7 0.00072 2.4E-08 71.6 3.3 25 552-576 80-104 (308)
168 3qks_A DNA double-strand break 96.7 0.0011 3.7E-08 65.7 4.4 25 552-576 23-47 (203)
169 3tau_A Guanylate kinase, GMP k 96.7 0.00085 2.9E-08 66.6 3.4 24 551-574 7-30 (208)
170 1kag_A SKI, shikimate kinase I 96.6 0.00085 2.9E-08 64.1 3.0 24 552-575 4-27 (173)
171 2p65_A Hypothetical protein PF 96.6 0.0025 8.6E-08 61.1 6.0 115 552-670 43-164 (187)
172 2dhr_A FTSH; AAA+ protein, hex 96.6 0.0055 1.9E-07 69.0 9.6 105 555-674 67-185 (499)
173 2bbw_A Adenylate kinase 4, AK4 96.5 0.00095 3.2E-08 68.1 3.0 22 552-573 27-48 (246)
174 1p9r_A General secretion pathw 96.5 0.0011 3.8E-08 73.0 3.5 33 543-576 159-191 (418)
175 3t15_A Ribulose bisphosphate c 96.5 0.0071 2.4E-07 63.4 9.5 25 552-576 36-60 (293)
176 1knq_A Gluconate kinase; ALFA/ 96.5 0.0012 4.2E-08 63.2 3.3 24 552-575 8-31 (175)
177 1u94_A RECA protein, recombina 96.5 0.009 3.1E-07 64.3 10.3 114 552-669 63-201 (356)
178 2qgz_A Helicase loader, putati 96.5 0.0011 3.9E-08 70.0 3.1 25 553-577 153-177 (308)
179 3kl4_A SRP54, signal recogniti 96.4 0.0046 1.6E-07 68.2 7.8 25 552-576 97-121 (433)
180 2xau_A PRE-mRNA-splicing facto 96.4 0.0016 5.5E-08 77.7 4.5 50 620-672 205-256 (773)
181 2qz4_A Paraplegin; AAA+, SPG7, 96.4 0.017 5.8E-07 58.9 11.5 23 552-574 39-61 (262)
182 3uie_A Adenylyl-sulfate kinase 96.4 0.0015 5E-08 64.4 3.3 32 546-577 18-50 (200)
183 1in4_A RUVB, holliday junction 96.4 0.0031 1E-07 67.5 5.8 24 553-576 52-75 (334)
184 1v5w_A DMC1, meiotic recombina 96.3 0.0051 1.7E-07 66.1 7.3 27 552-578 122-148 (343)
185 1ypw_A Transitional endoplasmi 96.3 0.0089 3E-07 71.7 10.0 107 552-672 238-354 (806)
186 3cf0_A Transitional endoplasmi 96.3 0.0057 2E-07 64.3 7.4 24 552-575 49-72 (301)
187 1nij_A Hypothetical protein YJ 96.3 0.0016 5.5E-08 69.2 3.1 23 553-575 5-27 (318)
188 3m6a_A ATP-dependent protease 96.2 0.0038 1.3E-07 71.5 5.8 26 551-576 107-132 (543)
189 4b4t_L 26S protease subunit RP 96.2 0.028 9.7E-07 61.9 12.5 108 552-674 215-336 (437)
190 1w1w_A Structural maintenance 96.2 0.0026 8.9E-08 70.6 4.0 25 552-576 26-50 (430)
191 4e22_A Cytidylate kinase; P-lo 96.1 0.0022 7.4E-08 65.8 3.0 22 552-573 27-48 (252)
192 1svm_A Large T antigen; AAA+ f 96.1 0.0015 5.1E-08 70.9 1.8 34 542-575 158-192 (377)
193 3auy_A DNA double-strand break 96.1 0.0029 9.9E-08 68.8 4.1 46 622-671 303-349 (371)
194 2vp4_A Deoxynucleoside kinase; 96.1 0.0015 5E-08 66.0 1.6 24 552-575 20-43 (230)
195 3d8b_A Fidgetin-like protein 1 96.1 0.022 7.4E-07 61.5 11.0 23 552-574 117-139 (357)
196 3ney_A 55 kDa erythrocyte memb 96.1 0.0026 9E-08 62.3 3.3 23 552-574 19-41 (197)
197 2v1u_A Cell division control p 96.1 0.0055 1.9E-07 66.4 6.2 25 552-576 44-68 (387)
198 1rz3_A Hypothetical protein rb 96.1 0.0027 9.3E-08 62.5 3.3 25 552-576 22-46 (201)
199 4b4t_K 26S protease regulatory 96.1 0.029 9.8E-07 61.7 11.6 106 552-673 206-326 (428)
200 2oap_1 GSPE-2, type II secreti 96.0 0.00074 2.5E-08 76.5 -1.2 31 544-574 251-282 (511)
201 3llm_A ATP-dependent RNA helic 96.0 0.0053 1.8E-07 62.0 5.3 26 552-577 76-101 (235)
202 1w1w_A Structural maintenance 96.0 0.02 7E-07 63.4 10.4 48 622-672 354-401 (430)
203 1xwi_A SKD1 protein; VPS4B, AA 96.0 0.024 8.1E-07 60.2 10.4 110 552-672 45-163 (322)
204 1jjv_A Dephospho-COA kinase; P 96.0 0.0027 9.3E-08 62.6 2.9 21 554-574 4-24 (206)
205 3tqc_A Pantothenate kinase; bi 96.0 0.0029 9.9E-08 67.0 3.1 22 554-575 94-115 (321)
206 1qhl_A Protein (cell division 96.0 0.00052 1.8E-08 69.1 -2.5 30 545-576 22-51 (227)
207 1sxj_C Activator 1 40 kDa subu 96.0 0.014 4.9E-07 62.3 8.5 23 555-577 49-71 (340)
208 2e87_A Hypothetical protein PH 95.9 0.012 4.2E-07 63.4 7.8 108 553-668 168-292 (357)
209 2yv5_A YJEQ protein; hydrolase 95.9 0.0032 1.1E-07 66.4 3.0 22 552-573 165-186 (302)
210 2rcn_A Probable GTPase ENGC; Y 95.9 0.0023 8E-08 68.7 2.0 23 551-573 214-236 (358)
211 2chg_A Replication factor C sm 95.9 0.039 1.3E-06 54.0 10.9 22 554-575 40-61 (226)
212 2if2_A Dephospho-COA kinase; a 95.9 0.0032 1.1E-07 61.9 2.7 21 554-574 3-23 (204)
213 3auy_A DNA double-strand break 95.9 0.012 4.1E-07 63.9 7.5 7 590-596 306-312 (371)
214 3syl_A Protein CBBX; photosynt 95.9 0.023 8E-07 59.5 9.6 25 552-576 67-91 (309)
215 2z43_A DNA repair and recombin 95.9 0.0056 1.9E-07 65.2 4.7 26 552-577 107-132 (324)
216 3lxx_A GTPase IMAP family memb 95.8 0.014 4.8E-07 58.9 7.2 21 554-574 31-51 (239)
217 1sxj_D Activator 1 41 kDa subu 95.8 0.021 7.3E-07 61.0 9.0 23 555-577 61-83 (353)
218 2b8t_A Thymidine kinase; deoxy 95.7 0.018 6E-07 57.7 7.4 106 552-670 12-128 (223)
219 1zu4_A FTSY; GTPase, signal re 95.7 0.0057 1.9E-07 64.9 3.9 32 545-576 97-129 (320)
220 1u0l_A Probable GTPase ENGC; p 95.7 0.0032 1.1E-07 66.3 1.8 22 552-573 169-190 (301)
221 4b4t_M 26S protease regulatory 95.6 0.057 2E-06 59.4 11.8 108 552-674 215-336 (434)
222 1cke_A CK, MSSA, protein (cyti 95.6 0.0049 1.7E-07 61.6 3.0 22 553-574 6-27 (227)
223 3eie_A Vacuolar protein sortin 95.6 0.038 1.3E-06 58.5 10.1 24 552-575 51-74 (322)
224 1jr3_A DNA polymerase III subu 95.6 0.027 9.3E-07 60.7 8.8 25 552-576 38-62 (373)
225 2pez_A Bifunctional 3'-phospho 95.5 0.0056 1.9E-07 58.8 2.9 24 552-575 5-28 (179)
226 2qp9_X Vacuolar protein sortin 95.5 0.032 1.1E-06 60.1 9.2 23 553-575 85-107 (355)
227 2qt1_A Nicotinamide riboside k 95.5 0.006 2.1E-07 60.1 2.9 23 552-574 21-43 (207)
228 4fcw_A Chaperone protein CLPB; 95.4 0.0086 2.9E-07 62.9 4.2 25 553-577 48-72 (311)
229 1xp8_A RECA protein, recombina 95.4 0.069 2.4E-06 57.6 11.3 116 552-669 74-212 (366)
230 4ad8_A DNA repair protein RECN 95.4 0.0033 1.1E-07 71.6 0.9 31 545-575 53-83 (517)
231 4b4t_J 26S protease regulatory 95.3 0.058 2E-06 58.6 10.3 106 553-673 183-302 (405)
232 1pui_A ENGB, probable GTP-bind 95.3 0.0046 1.6E-07 60.9 1.4 27 548-574 21-48 (210)
233 3hu3_A Transitional endoplasmi 95.3 0.059 2E-06 60.5 10.7 105 553-672 239-354 (489)
234 1y63_A LMAJ004144AAA protein; 95.3 0.0087 3E-07 57.9 3.4 29 546-574 3-32 (184)
235 4a1f_A DNAB helicase, replicat 95.3 0.031 1.1E-06 59.5 7.8 27 552-578 46-72 (338)
236 1oix_A RAS-related protein RAB 95.3 0.0071 2.4E-07 58.8 2.6 22 554-575 31-52 (191)
237 3t61_A Gluconokinase; PSI-biol 95.2 0.007 2.4E-07 59.4 2.5 24 552-575 18-41 (202)
238 3nwj_A ATSK2; P loop, shikimat 95.2 0.0037 1.3E-07 63.8 0.5 35 540-574 32-70 (250)
239 2f1r_A Molybdopterin-guanine d 95.2 0.0047 1.6E-07 59.2 1.1 24 553-576 3-26 (171)
240 1d2n_A N-ethylmaleimide-sensit 95.2 0.045 1.5E-06 56.3 8.7 23 553-575 65-87 (272)
241 2qor_A Guanylate kinase; phosp 95.2 0.0076 2.6E-07 59.3 2.7 23 552-574 12-34 (204)
242 2f9l_A RAB11B, member RAS onco 95.2 0.0081 2.8E-07 58.7 2.8 22 554-575 7-28 (199)
243 1qvr_A CLPB protein; coiled co 95.1 0.042 1.4E-06 66.4 9.4 111 554-670 193-311 (854)
244 2i1q_A DNA repair and recombin 95.0 0.034 1.1E-06 59.0 7.3 27 552-578 98-124 (322)
245 4b4t_I 26S protease regulatory 95.0 0.1 3.4E-06 57.0 11.0 109 552-675 216-338 (437)
246 2zan_A Vacuolar protein sortin 95.0 0.028 9.4E-07 62.6 6.8 24 552-575 167-190 (444)
247 3dm5_A SRP54, signal recogniti 95.0 0.031 1.1E-06 61.6 7.0 30 552-583 100-129 (443)
248 1t9h_A YLOQ, probable GTPase E 95.0 0.0041 1.4E-07 65.4 0.0 23 552-574 173-195 (307)
249 4b4t_H 26S protease regulatory 94.9 0.13 4.4E-06 56.7 11.6 107 552-673 243-363 (467)
250 1a5t_A Delta prime, HOLB; zinc 94.9 0.1 3.5E-06 55.5 10.6 111 552-669 24-149 (334)
251 3cm0_A Adenylate kinase; ATP-b 94.8 0.011 3.7E-07 57.0 2.5 22 552-573 4-25 (186)
252 2yvu_A Probable adenylyl-sulfa 94.8 0.014 4.8E-07 56.3 3.2 24 552-575 13-36 (186)
253 3vfd_A Spastin; ATPase, microt 94.8 0.12 4.1E-06 56.2 11.0 23 552-574 148-170 (389)
254 3pfi_A Holliday junction ATP-d 94.7 0.069 2.4E-06 56.7 8.8 63 554-636 57-119 (338)
255 3cr8_A Sulfate adenylyltranfer 94.7 0.01 3.4E-07 67.7 2.0 25 552-576 369-393 (552)
256 3n70_A Transport activator; si 94.6 0.026 9E-07 52.1 4.5 23 552-574 24-46 (145)
257 4eaq_A DTMP kinase, thymidylat 94.5 0.018 6.2E-07 57.9 3.3 24 552-575 26-49 (229)
258 3kb2_A SPBC2 prophage-derived 94.5 0.017 5.8E-07 54.7 2.8 20 554-573 3-22 (173)
259 3u61_B DNA polymerase accessor 94.4 0.054 1.9E-06 57.2 7.0 96 552-669 48-147 (324)
260 1iqp_A RFCS; clamp loader, ext 94.3 0.055 1.9E-06 56.9 6.8 23 554-576 48-70 (327)
261 3pvs_A Replication-associated 94.3 0.095 3.2E-06 58.2 9.0 92 553-666 51-142 (447)
262 2bjv_A PSP operon transcriptio 94.3 0.015 5.2E-07 59.6 2.3 22 553-574 30-51 (265)
263 2o5v_A DNA replication and rep 94.3 0.038 1.3E-06 59.4 5.5 6 591-596 294-299 (359)
264 2dy1_A Elongation factor G; tr 94.3 0.055 1.9E-06 63.4 7.2 104 552-671 9-139 (665)
265 2r8r_A Sensor protein; KDPD, P 94.3 0.022 7.4E-07 56.8 3.2 45 622-668 83-127 (228)
266 2ze6_A Isopentenyl transferase 94.2 0.019 6.5E-07 58.7 2.8 22 553-574 2-23 (253)
267 3co5_A Putative two-component 94.1 0.062 2.1E-06 49.4 5.8 88 553-667 28-115 (143)
268 3io5_A Recombination and repai 94.1 0.15 5.2E-06 53.3 9.3 114 552-669 29-173 (333)
269 1m7g_A Adenylylsulfate kinase; 94.1 0.023 7.9E-07 56.1 3.0 24 552-575 25-48 (211)
270 1ypw_A Transitional endoplasmi 94.0 0.03 1E-06 67.1 4.3 25 552-576 511-535 (806)
271 2p67_A LAO/AO transport system 94.0 0.018 6.2E-07 61.7 2.2 25 552-576 56-80 (341)
272 1np6_A Molybdopterin-guanine d 94.0 0.025 8.6E-07 54.2 2.9 23 553-575 7-29 (174)
273 1qhx_A CPT, protein (chloramph 94.0 0.026 8.9E-07 53.8 3.0 22 552-573 3-24 (178)
274 1q3t_A Cytidylate kinase; nucl 94.0 0.025 8.7E-07 57.0 3.1 23 552-574 16-38 (236)
275 1hqc_A RUVB; extended AAA-ATPa 93.9 0.14 4.8E-06 53.8 9.0 22 553-574 39-60 (324)
276 2q6t_A DNAB replication FORK h 93.9 0.09 3.1E-06 58.4 7.7 27 552-578 200-226 (444)
277 1vht_A Dephospho-COA kinase; s 93.8 0.027 9.4E-07 55.8 3.0 23 552-574 4-26 (218)
278 1via_A Shikimate kinase; struc 93.8 0.024 8.3E-07 54.0 2.5 21 554-574 6-26 (175)
279 1ly1_A Polynucleotide kinase; 93.8 0.027 9.1E-07 53.7 2.8 22 553-574 3-24 (181)
280 1kht_A Adenylate kinase; phosp 93.8 0.03 1E-06 54.0 3.1 23 552-574 3-25 (192)
281 1ojl_A Transcriptional regulat 93.8 0.025 8.4E-07 59.6 2.6 23 552-574 25-47 (304)
282 1gvn_B Zeta; postsegregational 93.7 0.031 1E-06 58.3 3.3 22 552-573 33-54 (287)
283 2p5t_B PEZT; postsegregational 93.7 0.024 8.2E-07 57.9 2.3 23 552-574 32-54 (253)
284 1odf_A YGR205W, hypothetical 3 93.7 0.032 1.1E-06 58.3 3.3 25 552-576 31-55 (290)
285 2www_A Methylmalonic aciduria 93.6 0.03 1E-06 60.1 3.1 24 552-575 74-97 (349)
286 2rhm_A Putative kinase; P-loop 93.6 0.031 1.1E-06 53.9 2.9 23 552-574 5-27 (193)
287 3cmw_A Protein RECA, recombina 93.6 0.21 7.2E-06 63.7 10.9 84 552-636 732-823 (1706)
288 1ni3_A YCHF GTPase, YCHF GTP-b 93.5 0.032 1.1E-06 60.7 3.0 24 552-575 20-43 (392)
289 3cf2_A TER ATPase, transitiona 93.5 0.21 7.3E-06 59.1 10.3 105 553-674 239-356 (806)
290 1ex7_A Guanylate kinase; subst 93.5 0.031 1.1E-06 54.1 2.6 20 553-572 2-21 (186)
291 2gno_A DNA polymerase III, gam 93.5 0.13 4.5E-06 53.9 7.7 102 553-669 19-123 (305)
292 2zts_A Putative uncharacterize 93.5 0.21 7.2E-06 50.1 9.0 27 552-578 30-56 (251)
293 3lw7_A Adenylate kinase relate 93.5 0.032 1.1E-06 52.6 2.7 20 553-572 2-21 (179)
294 1j8m_F SRP54, signal recogniti 93.4 0.046 1.6E-06 57.2 4.0 26 551-576 97-122 (297)
295 2vli_A Antibiotic resistance p 93.1 0.04 1.4E-06 52.7 2.8 22 552-573 5-26 (183)
296 2chq_A Replication factor C sm 93.1 0.055 1.9E-06 56.7 4.1 22 555-576 41-62 (319)
297 1tev_A UMP-CMP kinase; ploop, 93.0 0.045 1.5E-06 52.8 2.9 22 552-573 3-24 (196)
298 3iij_A Coilin-interacting nucl 93.0 0.041 1.4E-06 52.6 2.6 22 552-573 11-32 (180)
299 2wji_A Ferrous iron transport 93.0 0.042 1.4E-06 51.7 2.6 21 554-574 5-25 (165)
300 2jaq_A Deoxyguanosine kinase; 93.0 0.045 1.5E-06 53.3 2.9 21 554-574 2-22 (205)
301 1sxj_B Activator 1 37 kDa subu 92.9 0.21 7.1E-06 52.2 8.3 22 555-576 45-66 (323)
302 1uf9_A TT1252 protein; P-loop, 92.9 0.051 1.8E-06 52.8 3.2 23 552-574 8-30 (203)
303 1qvr_A CLPB protein; coiled co 92.8 0.14 4.6E-06 62.0 7.4 25 553-577 589-613 (854)
304 3pxg_A Negative regulator of g 92.7 0.091 3.1E-06 58.8 5.3 99 553-669 202-302 (468)
305 3r20_A Cytidylate kinase; stru 92.7 0.05 1.7E-06 54.7 2.8 23 552-574 9-31 (233)
306 1xx6_A Thymidine kinase; NESG, 92.6 0.35 1.2E-05 46.9 8.7 103 552-669 8-119 (191)
307 3cmw_A Protein RECA, recombina 92.6 0.38 1.3E-05 61.3 11.2 114 552-667 34-170 (1706)
308 2ffh_A Protein (FFH); SRP54, s 92.6 0.063 2.2E-06 59.0 3.7 26 551-576 97-122 (425)
309 3bh0_A DNAB-like replicative h 92.5 0.16 5.3E-06 53.6 6.5 27 552-578 68-94 (315)
310 2wjg_A FEOB, ferrous iron tran 92.4 0.055 1.9E-06 51.8 2.6 21 554-574 9-29 (188)
311 2c95_A Adenylate kinase 1; tra 92.4 0.06 2.1E-06 52.0 2.9 23 552-574 9-31 (196)
312 2plr_A DTMP kinase, probable t 92.3 0.061 2.1E-06 52.6 2.9 23 552-574 4-26 (213)
313 1r6b_X CLPA protein; AAA+, N-t 92.3 0.18 6.1E-06 60.0 7.5 112 552-670 207-327 (758)
314 1qf9_A UMP/CMP kinase, protein 92.3 0.068 2.3E-06 51.4 3.2 23 552-574 6-28 (194)
315 1gtv_A TMK, thymidylate kinase 92.3 0.03 1E-06 55.1 0.6 21 554-574 2-22 (214)
316 1ega_A Protein (GTP-binding pr 92.3 0.054 1.8E-06 56.8 2.6 23 552-574 8-30 (301)
317 2v54_A DTMP kinase, thymidylat 92.3 0.065 2.2E-06 52.2 3.0 23 552-574 4-26 (204)
318 2z0h_A DTMP kinase, thymidylat 92.3 0.061 2.1E-06 52.0 2.8 21 554-574 2-22 (197)
319 1ofh_A ATP-dependent HSL prote 92.3 0.09 3.1E-06 54.8 4.3 23 553-575 51-73 (310)
320 3ake_A Cytidylate kinase; CMP 92.3 0.062 2.1E-06 52.5 2.8 21 554-574 4-24 (208)
321 3trf_A Shikimate kinase, SK; a 92.2 0.068 2.3E-06 51.2 3.1 23 552-574 5-27 (185)
322 1xjc_A MOBB protein homolog; s 92.2 0.067 2.3E-06 50.9 2.9 22 553-574 5-26 (169)
323 2qby_B CDC6 homolog 3, cell di 92.2 0.17 5.8E-06 54.5 6.5 25 552-576 45-69 (384)
324 3te6_A Regulatory protein SIR3 92.2 0.48 1.6E-05 49.8 9.7 25 552-576 45-69 (318)
325 1nks_A Adenylate kinase; therm 92.1 0.066 2.3E-06 51.5 2.7 21 554-574 3-23 (194)
326 2wwf_A Thymidilate kinase, put 92.1 0.069 2.4E-06 52.4 2.9 23 552-574 10-32 (212)
327 2iut_A DNA translocase FTSK; n 92.0 0.21 7.2E-06 56.6 7.1 25 553-577 215-239 (574)
328 3t34_A Dynamin-related protein 92.0 0.51 1.8E-05 50.6 10.0 29 544-574 28-56 (360)
329 2orv_A Thymidine kinase; TP4A 91.9 0.087 3E-06 52.5 3.4 102 552-670 19-128 (234)
330 1um8_A ATP-dependent CLP prote 91.8 0.21 7.1E-06 54.0 6.7 24 552-575 72-95 (376)
331 2gj8_A MNME, tRNA modification 91.8 0.078 2.7E-06 50.3 2.9 23 552-574 4-26 (172)
332 1nn5_A Similar to deoxythymidy 91.7 0.08 2.7E-06 52.0 3.0 23 552-574 9-31 (215)
333 2zej_A Dardarin, leucine-rich 91.7 0.063 2.2E-06 51.4 2.1 21 554-574 4-24 (184)
334 2bwj_A Adenylate kinase 5; pho 91.6 0.083 2.8E-06 51.2 2.9 23 552-574 12-34 (199)
335 3cmu_A Protein RECA, recombina 91.6 0.45 1.5E-05 61.5 10.2 84 552-635 1081-1171(2050)
336 3bgw_A DNAB-like replicative h 91.6 0.53 1.8E-05 52.1 9.7 28 552-579 197-224 (444)
337 2orw_A Thymidine kinase; TMTK, 91.5 0.088 3E-06 50.8 3.0 25 552-576 3-27 (184)
338 1e6c_A Shikimate kinase; phosp 91.5 0.077 2.6E-06 50.1 2.5 22 553-574 3-24 (173)
339 3a4m_A L-seryl-tRNA(SEC) kinas 91.4 0.087 3E-06 53.9 2.9 23 552-574 4-26 (260)
340 2pbr_A DTMP kinase, thymidylat 91.3 0.093 3.2E-06 50.5 2.9 21 554-574 2-22 (195)
341 1a7j_A Phosphoribulokinase; tr 91.2 0.097 3.3E-06 54.5 3.0 23 552-574 5-27 (290)
342 3cmu_A Protein RECA, recombina 91.1 0.76 2.6E-05 59.5 11.5 115 552-670 383-522 (2050)
343 2xb4_A Adenylate kinase; ATP-b 91.0 0.1 3.4E-06 52.0 2.9 21 554-574 2-22 (223)
344 1zd8_A GTP:AMP phosphotransfer 91.0 0.1 3.5E-06 52.0 2.9 22 552-573 7-28 (227)
345 2iyv_A Shikimate kinase, SK; t 91.0 0.093 3.2E-06 50.3 2.5 22 553-574 3-24 (184)
346 2pt5_A Shikimate kinase, SK; a 91.0 0.11 3.7E-06 48.9 2.9 21 554-574 2-22 (168)
347 1ukz_A Uridylate kinase; trans 90.9 0.1 3.5E-06 50.8 2.8 22 552-573 15-36 (203)
348 3fb4_A Adenylate kinase; psych 90.9 0.1 3.5E-06 51.4 2.8 20 554-573 2-21 (216)
349 2c9o_A RUVB-like 1; hexameric 90.9 0.18 6.1E-06 56.1 5.1 67 553-632 64-135 (456)
350 1aky_A Adenylate kinase; ATP:A 90.9 0.11 3.9E-06 51.4 3.0 23 552-574 4-26 (220)
351 3hws_A ATP-dependent CLP prote 90.8 0.13 4.3E-06 55.4 3.6 23 553-575 52-74 (363)
352 2cdn_A Adenylate kinase; phosp 90.8 0.12 4E-06 50.4 3.0 23 552-574 20-42 (201)
353 3k1j_A LON protease, ATP-depen 90.7 0.097 3.3E-06 60.6 2.7 25 552-576 60-84 (604)
354 1m2o_B GTP-binding protein SAR 90.7 0.11 3.9E-06 50.0 2.8 31 544-574 15-45 (190)
355 2ga8_A Hypothetical 39.9 kDa p 90.6 0.079 2.7E-06 56.5 1.7 23 554-576 26-48 (359)
356 3umf_A Adenylate kinase; rossm 90.6 0.13 4.5E-06 51.0 3.2 33 541-573 14-50 (217)
357 3dl0_A Adenylate kinase; phosp 90.5 0.12 4E-06 51.0 2.8 20 554-573 2-21 (216)
358 1zak_A Adenylate kinase; ATP:A 90.4 0.11 3.8E-06 51.5 2.5 23 552-574 5-27 (222)
359 4ag6_A VIRB4 ATPase, type IV s 90.3 0.13 4.6E-06 55.9 3.3 26 552-577 35-60 (392)
360 3zvl_A Bifunctional polynucleo 90.3 0.12 4.2E-06 56.8 2.9 31 543-573 248-279 (416)
361 2grj_A Dephospho-COA kinase; T 90.1 0.14 4.7E-06 49.9 2.8 23 552-574 12-34 (192)
362 1zuh_A Shikimate kinase; alpha 90.1 0.14 4.9E-06 48.1 2.9 21 553-573 8-28 (168)
363 1q57_A DNA primase/helicase; d 90.0 0.46 1.6E-05 53.5 7.5 27 552-578 242-268 (503)
364 3ice_A Transcription terminati 89.9 0.17 5.8E-06 54.4 3.5 34 545-578 166-200 (422)
365 1ltq_A Polynucleotide kinase; 89.8 0.14 4.7E-06 53.4 2.8 22 553-574 3-24 (301)
366 1sky_E F1-ATPase, F1-ATP synth 89.7 0.31 1.1E-05 53.9 5.6 27 552-578 151-177 (473)
367 1g5t_A COB(I)alamin adenosyltr 89.6 1.1 3.9E-05 43.3 8.8 41 622-668 119-163 (196)
368 2f6r_A COA synthase, bifunctio 89.4 0.16 5.4E-06 52.6 2.8 22 552-573 75-96 (281)
369 1uj2_A Uridine-cytidine kinase 89.2 0.18 6E-06 51.2 3.0 23 552-574 22-44 (252)
370 1e4v_A Adenylate kinase; trans 89.1 0.18 6E-06 49.7 2.7 21 554-574 2-22 (214)
371 2qtf_A Protein HFLX, GTP-bindi 89.0 0.17 5.8E-06 54.5 2.8 22 554-575 181-202 (364)
372 3pxi_A Negative regulator of g 89.0 0.66 2.3E-05 55.1 8.2 23 554-576 523-545 (758)
373 4edh_A DTMP kinase, thymidylat 89.0 0.19 6.7E-06 49.6 3.0 30 552-583 6-35 (213)
374 1f6b_A SAR1; gtpases, N-termin 88.9 0.12 4E-06 50.2 1.3 31 544-574 17-47 (198)
375 2qmh_A HPR kinase/phosphorylas 88.9 0.27 9.4E-06 47.8 3.9 28 545-572 27-54 (205)
376 1r6b_X CLPA protein; AAA+, N-t 88.8 0.76 2.6E-05 54.6 8.5 23 554-576 490-512 (758)
377 3tlx_A Adenylate kinase 2; str 88.8 0.2 6.8E-06 50.6 2.9 22 552-573 29-50 (243)
378 3v9p_A DTMP kinase, thymidylat 88.8 0.21 7.1E-06 50.0 3.0 23 552-574 25-47 (227)
379 1w5s_A Origin recognition comp 88.7 0.46 1.6E-05 51.5 6.1 24 552-575 50-75 (412)
380 2j9r_A Thymidine kinase; TK1, 88.7 0.11 3.9E-06 51.1 1.0 104 552-670 28-140 (214)
381 3lv8_A DTMP kinase, thymidylat 88.5 0.22 7.6E-06 50.1 3.0 23 552-574 27-49 (236)
382 2ged_A SR-beta, signal recogni 88.2 0.22 7.5E-06 47.7 2.7 21 554-574 50-70 (193)
383 3k53_A Ferrous iron transport 88.2 0.18 6.3E-06 51.7 2.3 22 554-575 5-26 (271)
384 3pxi_A Negative regulator of g 88.1 0.36 1.2E-05 57.4 5.0 101 553-669 202-302 (758)
385 4tmk_A Protein (thymidylate ki 88.0 0.25 8.6E-06 48.8 3.0 30 552-583 3-32 (213)
386 3be4_A Adenylate kinase; malar 87.9 0.25 8.4E-06 48.8 2.9 23 552-574 5-27 (217)
387 1mky_A Probable GTP-binding pr 87.9 0.2 6.8E-06 55.5 2.4 22 554-575 182-203 (439)
388 3d3q_A TRNA delta(2)-isopenten 87.9 0.23 8E-06 52.6 2.8 22 553-574 8-29 (340)
389 3exa_A TRNA delta(2)-isopenten 87.8 0.25 8.6E-06 51.6 3.0 23 552-574 3-25 (322)
390 3crm_A TRNA delta(2)-isopenten 87.7 0.25 8.7E-06 52.0 3.0 22 553-574 6-27 (323)
391 1fzq_A ADP-ribosylation factor 87.5 0.23 7.8E-06 47.3 2.3 21 553-573 17-37 (181)
392 2dyk_A GTP-binding protein; GT 87.3 0.28 9.4E-06 45.2 2.7 21 554-574 3-23 (161)
393 3foz_A TRNA delta(2)-isopenten 87.2 0.29 9.8E-06 51.1 3.0 23 552-574 10-32 (316)
394 1moz_A ARL1, ADP-ribosylation 87.2 0.19 6.4E-06 47.6 1.5 22 552-573 18-39 (183)
395 2qag_A Septin-2, protein NEDD5 87.1 0.21 7.2E-06 53.7 2.0 29 540-573 30-58 (361)
396 3sr0_A Adenylate kinase; phosp 87.0 0.29 1E-05 48.1 2.8 21 554-574 2-22 (206)
397 1z2a_A RAS-related protein RAB 87.0 0.28 9.6E-06 45.4 2.6 21 554-574 7-27 (168)
398 2ce2_X GTPase HRAS; signaling 86.8 0.3 1E-05 44.9 2.7 20 555-574 6-25 (166)
399 1w4r_A Thymidine kinase; type 86.8 0.26 9E-06 47.7 2.3 110 540-671 10-130 (195)
400 1ak2_A Adenylate kinase isoenz 86.8 0.32 1.1E-05 48.6 3.0 23 552-574 16-38 (233)
401 2h92_A Cytidylate kinase; ross 86.5 0.3 1E-05 48.1 2.6 21 553-573 4-24 (219)
402 2ocp_A DGK, deoxyguanosine kin 86.5 0.32 1.1E-05 48.8 2.8 23 552-574 2-24 (241)
403 1z0j_A RAB-22, RAS-related pro 86.3 0.33 1.1E-05 45.0 2.7 20 554-573 8-27 (170)
404 1ek0_A Protein (GTP-binding pr 86.3 0.34 1.2E-05 44.9 2.8 20 555-574 6-25 (170)
405 1z08_A RAS-related protein RAB 86.1 0.34 1.2E-05 45.0 2.6 20 554-573 8-27 (170)
406 4dcu_A GTP-binding protein ENG 86.1 2.3 7.9E-05 47.0 9.9 32 540-573 13-44 (456)
407 1u8z_A RAS-related protein RAL 86.1 0.34 1.2E-05 44.7 2.6 21 554-574 6-26 (168)
408 3e2i_A Thymidine kinase; Zn-bi 86.1 0.35 1.2E-05 47.6 2.7 21 552-572 28-49 (219)
409 3ld9_A DTMP kinase, thymidylat 86.0 0.37 1.3E-05 48.0 3.0 23 552-574 21-43 (223)
410 1kao_A RAP2A; GTP-binding prot 86.0 0.34 1.2E-05 44.7 2.6 21 554-574 5-25 (167)
411 1ky3_A GTP-binding protein YPT 86.0 0.34 1.1E-05 45.6 2.6 21 554-574 10-30 (182)
412 2erx_A GTP-binding protein DI- 85.9 0.34 1.2E-05 45.0 2.6 19 555-573 6-24 (172)
413 1g16_A RAS-related protein SEC 85.9 0.35 1.2E-05 44.8 2.7 20 555-574 6-25 (170)
414 1svi_A GTP-binding protein YSX 85.6 0.34 1.2E-05 46.4 2.4 22 553-574 24-45 (195)
415 1wms_A RAB-9, RAB9, RAS-relate 85.6 0.36 1.2E-05 45.2 2.6 20 554-573 9-28 (177)
416 2lkc_A Translation initiation 85.5 0.37 1.3E-05 45.1 2.6 23 552-574 8-30 (178)
417 3q85_A GTP-binding protein REM 85.4 0.38 1.3E-05 44.7 2.6 19 555-573 5-23 (169)
418 1c1y_A RAS-related protein RAP 85.3 0.39 1.3E-05 44.4 2.6 20 555-574 6-25 (167)
419 3tmk_A Thymidylate kinase; pho 85.2 0.41 1.4E-05 47.4 2.9 23 552-574 5-27 (216)
420 3q72_A GTP-binding protein RAD 85.2 0.36 1.2E-05 44.6 2.3 19 555-573 5-23 (166)
421 2nzj_A GTP-binding protein REM 85.2 0.39 1.3E-05 44.8 2.6 20 554-573 6-25 (175)
422 2cxx_A Probable GTP-binding pr 85.1 0.37 1.3E-05 45.7 2.4 19 555-573 4-22 (190)
423 1upt_A ARL1, ADP-ribosylation 85.1 0.42 1.4E-05 44.4 2.8 20 554-573 9-28 (171)
424 2r2a_A Uncharacterized protein 85.1 0.44 1.5E-05 46.5 3.0 20 553-572 6-25 (199)
425 3tw8_B RAS-related protein RAB 85.1 0.38 1.3E-05 45.1 2.5 20 554-573 11-30 (181)
426 3cf2_A TER ATPase, transitiona 85.0 0.86 2.9E-05 54.0 5.9 105 552-673 511-631 (806)
427 3pqc_A Probable GTP-binding pr 84.7 0.4 1.4E-05 45.7 2.4 21 553-573 24-44 (195)
428 3ihw_A Centg3; RAS, centaurin, 84.7 0.43 1.5E-05 45.6 2.6 20 554-573 22-41 (184)
429 1zcb_A G alpha I/13; GTP-bindi 84.6 0.44 1.5E-05 51.2 2.9 20 554-573 35-54 (362)
430 2fn4_A P23, RAS-related protei 84.6 0.44 1.5E-05 44.7 2.6 21 554-574 11-31 (181)
431 2ohf_A Protein OLA1, GTP-bindi 84.5 0.39 1.3E-05 52.0 2.5 24 552-575 22-45 (396)
432 2r62_A Cell division protease 84.5 0.22 7.6E-06 50.8 0.5 22 554-575 46-67 (268)
433 2y8e_A RAB-protein 6, GH09086P 84.5 0.43 1.5E-05 44.7 2.5 20 554-573 16-35 (179)
434 1tue_A Replication protein E1; 84.4 0.39 1.3E-05 47.0 2.2 24 552-575 58-81 (212)
435 1nrj_B SR-beta, signal recogni 84.4 0.46 1.6E-05 46.5 2.8 22 553-574 13-34 (218)
436 1r2q_A RAS-related protein RAB 84.3 0.48 1.6E-05 43.8 2.8 21 554-574 8-28 (170)
437 1z0f_A RAB14, member RAS oncog 84.3 0.47 1.6E-05 44.3 2.8 21 554-574 17-37 (179)
438 4dsu_A GTPase KRAS, isoform 2B 84.3 0.45 1.5E-05 45.0 2.6 19 555-573 7-25 (189)
439 2oil_A CATX-8, RAS-related pro 84.3 0.47 1.6E-05 45.3 2.8 21 554-574 27-47 (193)
440 2a9k_A RAS-related protein RAL 84.2 0.46 1.6E-05 44.8 2.6 21 554-574 20-40 (187)
441 3uk6_A RUVB-like 2; hexameric 84.2 0.46 1.6E-05 50.8 2.9 25 552-576 70-94 (368)
442 3f9v_A Minichromosome maintena 84.1 0.26 8.9E-06 56.7 0.9 22 554-575 329-350 (595)
443 3con_A GTPase NRAS; structural 84.1 0.49 1.7E-05 45.1 2.8 21 554-574 23-43 (190)
444 1m7b_A RND3/RHOE small GTP-bin 84.0 0.46 1.6E-05 45.1 2.5 21 554-574 9-29 (184)
445 2wsm_A Hydrogenase expression/ 83.9 0.49 1.7E-05 46.4 2.7 22 553-574 31-52 (221)
446 2xtz_A Guanine nucleotide-bind 83.9 0.49 1.7E-05 50.6 2.9 21 555-575 12-32 (354)
447 2bme_A RAB4A, RAS-related prot 83.8 0.47 1.6E-05 44.9 2.5 20 554-573 12-31 (186)
448 3bc1_A RAS-related protein RAB 83.8 0.48 1.6E-05 44.9 2.6 21 554-574 13-33 (195)
449 3def_A T7I23.11 protein; chlor 83.8 2.8 9.4E-05 42.5 8.5 21 554-574 38-58 (262)
450 1c9k_A COBU, adenosylcobinamid 83.8 0.45 1.5E-05 45.6 2.3 20 554-573 1-20 (180)
451 1r8s_A ADP-ribosylation factor 83.7 0.52 1.8E-05 43.4 2.8 20 555-574 3-22 (164)
452 4hlc_A DTMP kinase, thymidylat 83.7 0.55 1.9E-05 46.0 3.0 23 552-574 2-24 (205)
453 2efe_B Small GTP-binding prote 83.6 0.51 1.7E-05 44.3 2.6 21 554-574 14-34 (181)
454 3b1v_A Ferrous iron uptake tra 83.5 0.48 1.7E-05 48.7 2.6 21 554-574 5-25 (272)
455 2hxs_A RAB-26, RAS-related pro 83.5 0.51 1.7E-05 44.2 2.6 21 554-574 8-28 (178)
456 3kkq_A RAS-related protein M-R 83.4 0.52 1.8E-05 44.5 2.6 20 554-573 20-39 (183)
457 1vg8_A RAS-related protein RAB 83.2 0.55 1.9E-05 45.3 2.7 21 554-574 10-30 (207)
458 3tqf_A HPR(Ser) kinase; transf 83.1 0.75 2.6E-05 43.6 3.5 25 548-572 12-36 (181)
459 2bov_A RAla, RAS-related prote 83.0 0.54 1.8E-05 45.3 2.6 21 554-574 16-36 (206)
460 3clv_A RAB5 protein, putative; 83.0 0.57 1.9E-05 44.8 2.7 21 554-574 9-29 (208)
461 3a8t_A Adenylate isopentenyltr 83.0 0.58 2E-05 49.4 3.0 23 552-574 40-62 (339)
462 2g6b_A RAS-related protein RAB 82.8 0.6 2E-05 43.8 2.8 20 554-573 12-31 (180)
463 3t5g_A GTP-binding protein RHE 82.7 0.56 1.9E-05 44.2 2.5 20 554-573 8-27 (181)
464 3e1s_A Exodeoxyribonuclease V, 82.7 0.58 2E-05 53.5 3.1 23 552-574 204-226 (574)
465 3tkl_A RAS-related protein RAB 82.6 0.58 2E-05 44.7 2.6 20 554-573 18-37 (196)
466 2fv8_A H6, RHO-related GTP-bin 82.5 0.54 1.8E-05 45.7 2.4 35 540-574 12-47 (207)
467 2fg5_A RAB-22B, RAS-related pr 82.4 0.6 2.1E-05 44.7 2.6 21 554-574 25-45 (192)
468 1mh1_A RAC1; GTP-binding, GTPa 82.4 0.6 2E-05 44.0 2.6 21 554-574 7-27 (186)
469 3t1o_A Gliding protein MGLA; G 82.4 0.63 2.1E-05 44.3 2.8 20 554-573 16-35 (198)
470 2gf9_A RAS-related protein RAB 82.3 0.63 2.1E-05 44.3 2.8 21 554-574 24-44 (189)
471 3cbq_A GTP-binding protein REM 82.3 0.48 1.7E-05 45.7 1.9 19 554-572 25-43 (195)
472 2ew1_A RAS-related protein RAB 82.1 0.59 2E-05 45.4 2.5 21 554-574 28-48 (201)
473 2gf0_A GTP-binding protein DI- 82.0 0.63 2.2E-05 44.5 2.6 21 554-574 10-30 (199)
474 1ksh_A ARF-like protein 2; sma 82.0 0.6 2E-05 44.2 2.4 21 553-573 19-39 (186)
475 2o52_A RAS-related protein RAB 82.0 0.61 2.1E-05 45.0 2.5 21 554-574 27-47 (200)
476 4i1u_A Dephospho-COA kinase; s 81.8 0.65 2.2E-05 45.7 2.6 20 554-573 11-30 (210)
477 3dz8_A RAS-related protein RAB 81.6 0.64 2.2E-05 44.4 2.5 21 554-574 25-45 (191)
478 2a5j_A RAS-related protein RAB 81.6 0.66 2.3E-05 44.3 2.6 21 554-574 23-43 (191)
479 1p5z_B DCK, deoxycytidine kina 81.5 0.39 1.3E-05 48.9 1.0 22 552-573 24-45 (263)
480 2v3c_C SRP54, signal recogniti 81.5 0.69 2.3E-05 50.9 3.0 25 552-576 99-123 (432)
481 1zj6_A ADP-ribosylation factor 81.4 0.66 2.2E-05 44.1 2.5 22 552-573 16-37 (187)
482 2hf9_A Probable hydrogenase ni 81.3 0.7 2.4E-05 45.5 2.7 22 553-574 39-60 (226)
483 3oes_A GTPase rhebl1; small GT 81.1 0.68 2.3E-05 44.6 2.5 21 554-574 26-46 (201)
484 2il1_A RAB12; G-protein, GDP, 81.1 0.67 2.3E-05 44.4 2.4 21 554-574 28-48 (192)
485 1zd9_A ADP-ribosylation factor 81.1 0.71 2.4E-05 44.0 2.6 21 554-574 24-44 (188)
486 3reg_A RHO-like small GTPase; 81.1 0.74 2.5E-05 44.0 2.8 21 554-574 25-45 (194)
487 2qen_A Walker-type ATPase; unk 81.0 0.75 2.6E-05 48.4 3.0 23 552-574 31-53 (350)
488 2bcg_Y Protein YP2, GTP-bindin 81.0 0.72 2.5E-05 44.6 2.7 21 554-574 10-30 (206)
489 3eph_A TRNA isopentenyltransfe 81.0 0.71 2.4E-05 50.0 2.8 22 553-574 3-24 (409)
490 3bwd_D RAC-like GTP-binding pr 80.9 0.73 2.5E-05 43.3 2.6 20 554-573 10-29 (182)
491 2h17_A ADP-ribosylation factor 80.9 0.64 2.2E-05 43.9 2.2 21 554-574 23-43 (181)
492 1gwn_A RHO-related GTP-binding 80.9 0.73 2.5E-05 44.8 2.7 21 554-574 30-50 (205)
493 1z06_A RAS-related protein RAB 80.7 0.77 2.6E-05 43.6 2.7 20 554-573 22-41 (189)
494 2atv_A RERG, RAS-like estrogen 80.7 0.77 2.6E-05 44.0 2.7 21 554-574 30-50 (196)
495 2p5s_A RAS and EF-hand domain 80.6 0.78 2.7E-05 44.1 2.8 22 553-574 29-50 (199)
496 1zbd_A Rabphilin-3A; G protein 80.5 0.75 2.6E-05 44.3 2.6 20 554-573 10-29 (203)
497 1x3s_A RAS-related protein RAB 80.4 0.8 2.7E-05 43.5 2.8 20 554-573 17-36 (195)
498 2cjw_A GTP-binding protein GEM 80.4 0.77 2.6E-05 44.1 2.6 20 554-573 8-27 (192)
499 3gmt_A Adenylate kinase; ssgci 80.2 0.79 2.7E-05 45.7 2.6 21 554-574 10-30 (230)
500 2b6h_A ADP-ribosylation factor 80.0 0.74 2.5E-05 44.1 2.3 21 553-573 30-50 (192)
No 1
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=100.00 E-value=1.4e-94 Score=867.06 Aligned_cols=714 Identities=23% Similarity=0.352 Sum_probs=541.6
Q ss_pred eEEEEEEc-----CCeEEEEEEEcccccEEEEEEeCCCCCCccHHHHHhhcCCc-eEEeCCCCChhH---HHHHhhhcCC
Q 043119 3 VYMACILH-----GHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQP-QIIYTSTKSEES---FLSALKRSDG 73 (792)
Q Consensus 3 v~l~~i~~-----~~~iGiA~~D~stg~l~i~e~~d~~~~~~~~~~~~~~q~~P-~iIi~~~~~~~~---~~~~l~~~~~ 73 (792)
.|++++.. ++.+|+||+|++||+|.++++.|+..+......+.++ +| ++|++++..... +...+.. .+
T Consensus 145 ~~l~AIk~~~~~~~~~~Gla~~D~stge~~~~~~~d~~~~~~l~~~l~~~--~P~Eil~~~~~~~~~~~~l~~~~~~-~~ 221 (934)
T 3thx_A 145 IGVVGVKMSAVDGQRQVGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQI--GPKECVLPGGETAGDMGKLRQIIQR-GG 221 (934)
T ss_dssp CCEEEEEECCSSSSCEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHH--CCSEEEEESSCCCHHHHHHHHHHHH-HT
T ss_pred ceEEEEEEeecCCCcEEEEEEEECCCCeEEEEecCCchHHHHHHHHHHhC--CCeEEEeeCCCCcccHHHHHHHHhh-cC
Confidence 56777733 5689999999999999999999885443333445544 56 566555433211 2222332 11
Q ss_pred CCCCceeeeccCCCCCHHHHHHHHHhh-hcccCCCCCchhhHHhhhhccccCCchHHHHHHHHHHHHHhhcccchhhhhh
Q 043119 74 TTEAPTVKLVKSSIFSYEQAWHRLIYL-RVTGMDDGLSIKERICYLNSMMDMGSEVQVRASGGLLAVLENERIVDTLEQK 152 (792)
Q Consensus 74 ~~~~~~v~~~~~~~F~~~~~~~~l~~l-~~~~~~~~~~~~~~~~~l~s~~~~~~~~~i~Algall~yl~~~~~~~~l~~~ 152 (792)
..++..++++|+.+.+...+..+ ..... .... ..++...+..++++|+|||++||+.++..
T Consensus 222 ----~~~~~~~~~~f~~~~~~~~l~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~a~gall~Yl~~~~~~------ 283 (934)
T 3thx_A 222 ----ILITERKKADFSTKDIYQDLNRLLKGKKG-EQMN-------SAVLPEMENQVAVSSLSAVIKFLELLSDD------ 283 (934)
T ss_dssp ----CEEEEECGGGGCCSSHHHHHHHHBCCCTT-SCCC-------GGGCGGGGCHHHHHHHHHHHHHHTGGGCG------
T ss_pred ----ceEEecchhhcCHHHHHHHHHHHhccccc-cccc-------cccccccccHHHHHHHHHHHHHHHHhcCc------
Confidence 24666778889877776666532 21111 0000 01111234578999999999999865321
Q ss_pred ccCCccccccceEEEccCCcEEecHHHHHhccCccCCCCCCCCCCCCcCccccHhhhccccCCchhhHHHHHHhhccCCC
Q 043119 153 ESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILD 232 (792)
Q Consensus 153 ~~~~~~~~i~~~~~~~~~~~m~iD~~Tl~~LeI~~~~~~~s~~~~g~~k~~~SLf~lLN~t~T~~G~RLLr~wL~~Pl~d 232 (792)
..+++..+..+..+++|.||++|++||||+++..++ ...++|||++||||+||||+|+||+||++|++|
T Consensus 284 ----~~~~~~~~~~~~~~~~m~lD~~t~~nLEl~~~~~~~-------~~~~~SL~~~ld~t~T~~G~RlLr~wl~~Pl~d 352 (934)
T 3thx_A 284 ----SNFGQFELTTFDFSQYMKLDIAAVRALNLFQGSVED-------TTGSQSLAALLNKCKTPQGQRLVNQWIKQPLMD 352 (934)
T ss_dssp ----GGTTCBEEEECCGGGBCEECHHHHHHTTSCC----------------CCHHHHHCCCSSHHHHHHHHHHHHSCBCC
T ss_pred ----cccccccceEEcCCCeEEeCHHHHhhccccccCCCC-------CCCCCcHHHHhccCCCHHHHHHHHHHHhCcCCC
Confidence 123445678889999999999999999999886531 112359999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCHHHHHHHHH-hcccCCChhHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcC---ch
Q 043119 233 LENLNSRLNAISFFLCSEELMASLHE-TLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGI---SE 308 (792)
Q Consensus 233 ~~~I~~R~daVe~l~~~~~l~~~l~~-~Lk~i~Dieril~ri~~~~~~~~~~d~~~l~~~i~~l~~l~~~l~~~~---~~ 308 (792)
+++|+.|||+|++|+++.+++..++. .|++++|++|+++|+..++ ++++|+..+++++..+..+.+.+.... .+
T Consensus 353 ~~~I~~R~d~Ve~l~~~~~~~~~l~~~~L~~i~DleRl~~ri~~~~--~~~~dl~~l~~~l~~~~~l~~~l~~~~~~~~~ 430 (934)
T 3thx_A 353 KNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQA--ANLQDCYRLYQGINQLPNVIQALEKHEGKHQK 430 (934)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHTTTGGGCCCHHHHHHHHHTTC--CCHHHHHHHHHHHTTHHHHHHHHHHTCCSSST
T ss_pred HHHHHHHHHHHHHHhhChHHHHHHHHHHhcCCCCHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHHHHhcccccch
Confidence 99999999999999999999999998 6999999999999999864 689999999999888888777765321 11
Q ss_pred HHHHHHHhhchhHHHHHHHhhhHhHHHHHHHHHhhhccCcccccccCcccccCcChhHHHHHHHHHhhHHHHHHHHHHHH
Q 043119 309 SLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLEL 388 (792)
Q Consensus 309 ~l~~~l~~~~~~l~~~~~~~i~~~l~~i~~~i~~~Id~~~~~~~~~~~~Ik~g~~~eLD~lr~~~~~l~~~L~~~~~~~~ 388 (792)
.+.. . ++..+.+ ....+..+.++|..+|+.+... .+ .++|++|++++||++|+.++++.+++.++..++.
T Consensus 431 ~l~~----~---~~~~l~~-~~~~l~~~~~~i~~~i~~~~~~-~g-~~~i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~ 500 (934)
T 3thx_A 431 LLLA----V---FVTPLTD-LRSDFSKFQEMIETTLDMDQVE-NH-EFLVKPSFDPNLSELREIMNDLEKKMQSTLISAA 500 (934)
T ss_dssp TGGG----G---THHHHHH-HHHHHHHHHHHHHTTBCTTGGG-TT-CCCBCTTSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH----H---HHHHHHH-HHhhHHHHHHHHHHHhCcchhh-cC-CceeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1100 0 1111111 1245677788888999887643 22 3689999999999999999999999988777666
Q ss_pred hhCcccccccccCeEEEEcccceEEEEeccccchhhhhhcCCceEEEEeecCCeeEEEEeChhhHHHHHHHHHHHHHHHH
Q 043119 389 VQLPHLCKEMFVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILD 468 (792)
Q Consensus 389 ~~l~~~~~~~~~~~i~~~~~~Gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~ 468 (792)
+++... ..+++++.|++..||+++++... ........+| ...++.++ ..+|+|++++++++++.++..++.+
T Consensus 501 ~~~~~~--~~~~lk~~~~~~~Gy~i~v~~~~--~~~~~~~~~~--~~~~t~~~--~~rf~t~el~~l~~~~~~~~~~~~~ 572 (934)
T 3thx_A 501 RDLGLD--PGKQIKLDSSAQFGYYFRVTCKE--EKVLRNNKNF--STVDIQKN--GVKFTNSKLTSLNEEYTKNKTEYEE 572 (934)
T ss_dssp HHSCCC--BTTTBEEEECC--CEEEEECHHH--HTTTTTCSSC--EEEEEC----CEEEECTTHHHHHHHHTTTTHHHHH
T ss_pred HHhCCC--ccceEEEEEeccceEEEEEEech--hhccCCCCCc--EEEEcccC--eEEEECHHHHHHHHHHHHHHHHHHH
Confidence 554321 12356889999999999996421 1111111234 33444444 3578999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh--CCCCCceecC--CCcEEEecccceeeecc-cCceec
Q 043119 469 MERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQ--NNYMRPILTL--EPLLDIQNGRHVLQEMT-VDTFIP 543 (792)
Q Consensus 469 ~~~~i~~~l~~~~~~~~~~l~~~~~~i~~lD~~~s~a~~a~~--~~~~~P~~~~--~~~l~i~~~~hp~~~~~-~~~~v~ 543 (792)
++.+++.+|.+.+..+.+.|.++.+++++|||++|+|.+|.. ++||||++.+ +..+.++++|||+++.. ...|||
T Consensus 573 ~e~~i~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~rP~~~~~~~~~i~i~~~rHP~le~~~~~~~v~ 652 (934)
T 3thx_A 573 AQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPAILEKGQGRIILKASRHACVEVQDEIAFIP 652 (934)
T ss_dssp HHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCBCCEEECTTSCEEEEEEECCTTTTTC--CCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCeeccCCCcceEeecCccchhhhcCCceeec
Confidence 999999999999999999999999999999999999999987 7899999987 66799999999999854 357999
Q ss_pred cceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeeccc--------ccchhhccchhHHHHHHH
Q 043119 544 NDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQV 614 (792)
Q Consensus 544 n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~--------~~~~~~~~s~f~~e~~~~ 614 (792)
||++|+.+ |++++||||||||||||||++|++++|+|+|+|||++.+.++++| .+.+..+.|+|+.||.++
T Consensus 653 ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~ 732 (934)
T 3thx_A 653 NDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLET 732 (934)
T ss_dssp EEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHH
T ss_pred ccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHH
Confidence 99999988 899999999999999999999999999999999999999988887 345677899999999999
Q ss_pred HHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhcCCCCCCCceeEEEEEEeeccC
Q 043119 615 GMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPEN 694 (792)
Q Consensus 615 ~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~~~~~~~~~v~~~~~~~~~~~~ 694 (792)
+.+++.+++++||||||||+||||.+|.++++++++++.+.. ++++||+|||++++... ...+.+.++||.+....
T Consensus 733 a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~-g~~vl~aTH~~el~~la--d~~~~v~ng~v~~~~~~- 808 (934)
T 3thx_A 733 ASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKI-GAFCMFATHFHELTALA--NQIPTVNNLHVTALTTE- 808 (934)
T ss_dssp HHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTT-CCEEEEEESCGGGGGGG--GTCTTEEEEEEEEEEET-
T ss_pred HHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC-CCEEEEEcCcHHHHHHh--cccceeEeeEEEEEecC-
Confidence 999999999999999999999999999999999999998642 68999999999998642 34567889999876432
Q ss_pred CCCCCCceEEeEEeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcChhhhhhh-------h-hc-chH---HHHH
Q 043119 695 NSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERWS-------H-EN-ISA---QDQQ 762 (792)
Q Consensus 695 ~~~~~~~~~~~y~l~~G~~~~s~gi~~A~~~g~p~~ii~~A~~~~~~~~~~~~~~~~~-------~-~~-~~~---~~~~ 762 (792)
++++|+|++.+|+++.|||++||+++|+|++||+||+++++++++........ . .. ..+ .+..
T Consensus 809 -----~~l~~~y~l~~G~~~~S~gi~vA~~~glp~~vi~~A~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 883 (934)
T 3thx_A 809 -----ETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEEFQYIGESQGYDIMEPAAKKCYLEREQGEKI 883 (934)
T ss_dssp -----TEEEEEEEEEESCCCCCCHHHHHHHTTCCHHHHHHHHHHHHHTTTTTC---------------CCSHHHHHHHHH
T ss_pred -----CcEEEEEEEeeCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccchH
Confidence 68999999999999999999999999999999999999999999765321100 0 00 001 1123
Q ss_pred HHHHHHHHHhCCCCc
Q 043119 763 YKNAVEKMLAFDVLK 777 (792)
Q Consensus 763 ~~~~~~~~~~~d~~~ 777 (792)
.+++.+.++++|+++
T Consensus 884 ~~~~~~~~~~l~~~~ 898 (934)
T 3thx_A 884 IQEFLSKVKQMPFTE 898 (934)
T ss_dssp HHHHHHHHHTCCGGG
T ss_pred HHHHHHHHHcCCccc
Confidence 457888999999864
No 2
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=100.00 E-value=2.6e-91 Score=830.68 Aligned_cols=656 Identities=25% Similarity=0.328 Sum_probs=526.9
Q ss_pred ceEEEEEE-cCCeEEEEEEEcccccEEEEEEeCCCCCCccHHHHHhhcCCc-eEEeCCCCChhHHHHHhhhcCCCCCCce
Q 043119 2 QVYMACIL-HGHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQP-QIIYTSTKSEESFLSALKRSDGTTEAPT 79 (792)
Q Consensus 2 ~v~l~~i~-~~~~iGiA~~D~stg~l~i~e~~d~~~~~~~~~~~~~~q~~P-~iIi~~~~~~~~~~~~l~~~~~~~~~~~ 79 (792)
++||+++. .++.+|+||+|++||+|+++++.|. ......+.++ +| ++|+.++..+ .. +... ...
T Consensus 130 ~n~l~ai~~~~~~~Gla~~D~stg~~~~~~~~d~---~~l~~~l~~~--~P~Eil~~~~~~~-~~---l~~~-----~~~ 195 (800)
T 1wb9_A 130 DNLLAAIWQDSKGFGYATLDISSGRFRLSEPADR---ETMAAELQRT--NPAELLYAEDFAE-MS---LIEG-----RRG 195 (800)
T ss_dssp CCCEEEEEECSSCEEEEEECTTTCCEEEECCCSH---HHHHHHHHHH--CCSEEEEETTCCC-GG---GTTT-----CSS
T ss_pred CcEEEEEEEcCCEEEEEEEECCCCEEEEEEecCH---HHHHHHHHhc--CCeEEEEcCCCCh-HH---Hhhc-----ccc
Confidence 67888885 5678999999999999999998642 1122334444 56 4555544322 11 2211 123
Q ss_pred eeeccCCCCCHHHHHHHHH-hhhcccCCCCCchhhHHhhhhccccCCchHHHHHHHHHHHHHhhcccchhhhhhccCCcc
Q 043119 80 VKLVKSSIFSYEQAWHRLI-YLRVTGMDDGLSIKERICYLNSMMDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNAS 158 (792)
Q Consensus 80 v~~~~~~~F~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~l~s~~~~~~~~~i~Algall~yl~~~~~~~~l~~~~~~~~~ 158 (792)
++..+.++|+...+...|. .+....+ .++...+...+++|+|||++||+.++.. ..
T Consensus 196 ~~~~~~~~f~~~~~~~~l~~~~~~~~l-------------~~~~~~~~~~~~~a~gall~Yl~~~~~~----------~~ 252 (800)
T 1wb9_A 196 LRRRPLWEFEIDTARQQLNLQFGTRDL-------------VGFGVENAPRGLCAAGCLLQYAKDTQRT----------TL 252 (800)
T ss_dssp EEEECGGGGCHHHHHHHHHHHHTCSCS-------------GGGTCTTCHHHHHHHHHHHHHHHHHHCS----------CC
T ss_pred eEEccccccChhHHHHHHHHHhCccch-------------hhccccCcHHHHHHHHHHHHHHHHhhhh----------cc
Confidence 5566778899988887776 3332211 1121224577899999999999876431 23
Q ss_pred ccccceEEEccCCcEEecHHHHHhccCccCCCCCCCCCCCCcCccccHhhhccccCCchhhHHHHHHhhccCCChHHHHH
Q 043119 159 ITIDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNS 238 (792)
Q Consensus 159 ~~i~~~~~~~~~~~m~iD~~Tl~~LeI~~~~~~~s~~~~g~~k~~~SLf~lLN~t~T~~G~RLLr~wL~~Pl~d~~~I~~ 238 (792)
.++..+..+..+++|.||.+|+++|||+++.+. .++ +|||+++|+|+|+||+|+||+||++|++|.++|+.
T Consensus 253 ~~~~~~~~~~~~~~m~ld~~t~~~LEl~~~~~~--------~~~-gSL~~ll~~t~T~~G~RlL~~wl~~Pl~d~~~I~~ 323 (800)
T 1wb9_A 253 PHIRSITMEREQDSIIMDAATRRNLEITQNLAG--------GAE-NTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLE 323 (800)
T ss_dssp TTCCCCEECCGGGBCEECHHHHHHTTSSSCTTS--------CST-TSHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHH
T ss_pred ccccccEEEccCCEEEecHHHHHhccCcccCCC--------Ccc-ccHHHHhCCCcCHHHHHHHHHHhhCCCCCHHHHHH
Confidence 567788999999999999999999999987541 233 49999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCHHHHHHHHHhcccCCChhHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhhc
Q 043119 239 RLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLN 318 (792)
Q Consensus 239 R~daVe~l~~~~~l~~~l~~~Lk~i~Dieril~ri~~~~~~~~~~d~~~l~~~i~~l~~l~~~l~~~~~~~l~~~l~~~~ 318 (792)
||++|++|.+ ++..++..|++++|++|+++|+..+ ..+++|+..+.+++..+..+.+.+.....+.+.
T Consensus 324 R~~~v~~~~~---~~~~l~~~L~~~~Dler~l~r~~~~--~~~~~dl~~l~~~l~~~~~l~~~l~~~~~~~L~------- 391 (800)
T 1wb9_A 324 RQQTIGALQD---FTAGLQPVLRQVGDLERILARLALR--TARPRDLARMRHAFQQLPELRAQLETVDSAPVQ------- 391 (800)
T ss_dssp HHHHHHHTGG---GHHHHHHHHHTTCSHHHHHHHHHHT--CCCHHHHHHHHHHHTTHHHHHHHHHSCCCHHHH-------
T ss_pred HHHHHHHHHH---HHHHHHHHhcCCccHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH-------
Confidence 9999999997 7889999999999999999999875 478999999999998888888777543222222
Q ss_pred hhHHHHHHHhhhHhHHHHHHHHHhhhccCcccccccCcccccCcChhHHHHHHHHHhhHHHHHHHHHHHHhhCccccccc
Q 043119 319 FDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEM 398 (792)
Q Consensus 319 ~~l~~~~~~~i~~~l~~i~~~i~~~Id~~~~~~~~~~~~Ik~g~~~eLD~lr~~~~~l~~~L~~~~~~~~~~l~~~~~~~ 398 (792)
.+...+ ..+..+.+.|.++|+.+++.....++.|++|++++||++|+.+++..+++.++...+.+.+. .
T Consensus 392 -----~l~~~l-~~~~~l~~~i~~~i~~~~~~~~~~~~~I~~g~~~eLd~lr~~~~~~~~~l~~~~~~~~~~~~-----~ 460 (800)
T 1wb9_A 392 -----ALREKM-GEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERERTG-----L 460 (800)
T ss_dssp -----HHHHHH-CCCHHHHHHHHHHBCSSCCSCSTTCCCBCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----C
T ss_pred -----HHHHhc-ccHHHHHHHHHHHhCcCchhhhhcCCeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----C
Confidence 222222 24566777788899987654333456799999999999999999999999887765543322 1
Q ss_pred ccCeEEEEcccceEEEEeccccchhhhhhcC-CceEEEEeecCCeeEEEEeChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043119 399 FVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQ-GFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDL 477 (792)
Q Consensus 399 ~~~~i~~~~~~Gy~i~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~i~~~l 477 (792)
..+++.|++..||+++|+.. ....+| +|.. .++.+ +..+|.+++++++++++.++..++.+++.+++.+|
T Consensus 461 ~~l~i~~~~~~gy~i~V~~~-----~~~~vp~~~i~--~~s~~--~~~~f~tp~l~~l~~~i~~~~~~~~~~e~~i~~~l 531 (800)
T 1wb9_A 461 DTLKVGFNAVHGYYIQISRG-----QSHLAPINYMR--RQTLK--NAERYIIPELKEYEDKVLTSKGKALALEKQLYEEL 531 (800)
T ss_dssp TTCEEEEETTTEEEEEEEHH-----HHTTSCTTCEE--EEECS--SEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEecCcceEEEEEecc-----ccccCCcceEE--eeecc--CCCEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24578999999999999642 334567 4532 22222 34578999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCceecCCCcEEEecccceeeecc-cCceeccceeecCCCcEEE
Q 043119 478 VSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMT-VDTFIPNDTRIDNDGRINI 556 (792)
Q Consensus 478 ~~~~~~~~~~l~~~~~~i~~lD~~~s~a~~a~~~~~~~P~~~~~~~l~i~~~~hp~~~~~-~~~~v~n~~~~~~~~~~~~ 556 (792)
.+.+..+.+.|..+.+.+++|||++|+|.+|..++||||++++++.+.++++|||+++.. .+.+||||++|+.+|++++
T Consensus 532 ~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~~~i~i~~~rHP~le~~~~~~~vlndisl~~~g~i~~ 611 (800)
T 1wb9_A 532 FDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKPGIRITEGRHPVVEQVLNEPFIANPLNLSPQRRMLI 611 (800)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCEECSSSCEEEEEECCTTHHHHCSSCCCCEEEEECSSSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccEECCCCCEEEEeccccEEEccCCCceeeecccccCCCcEEE
Confidence 999999999999999999999999999999999999999999888899999999999753 4689999999994499999
Q ss_pred EEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeeccc--------ccchhhccchhHHHHHHHHHHHHhCCCCeEEE
Q 043119 557 ITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCL 628 (792)
Q Consensus 557 ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~--------~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvl 628 (792)
||||||||||||||+++++.+++|+|++||+..+.+++++ .+++..+.|+|+.||.+++.++..+++++|+|
T Consensus 612 ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~~e~~~~~~il~~a~~psLlL 691 (800)
T 1wb9_A 612 ITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVL 691 (800)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCTTEEEE
T ss_pred EECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHHHHhhCCHHHHHHhhhhhhhHHHHHHHHHHHhccCCCEEE
Confidence 9999999999999999999999999999999998888877 34566678999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhcCCCCCCCceeEEEEEEeeccCCCCCCCceEEeEEe
Q 043119 629 LDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRL 708 (792)
Q Consensus 629 lDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~y~l 708 (792)
|||||+|||+.|+.++++++++++.+.. ++++|++||+++++... ...+.+.++||.+.... ++++|+|++
T Consensus 692 LDEp~~Gtd~~d~~~i~~~ll~~l~~~~-g~~vl~~TH~~el~~l~--d~~~~v~n~~~~~~~~~------~~l~~~ykl 762 (800)
T 1wb9_A 692 MDEIGRGTSTYDGLSLAWACAENLANKI-KALTLFATHYFELTQLP--EKMEGVANVHLDALEHG------DTIAFMHSV 762 (800)
T ss_dssp EESCCCCSSSSHHHHHHHHHHHHHHHTT-CCEEEEECSCGGGGGHH--HHSTTEEEEEEEEEEET------TEEEEEEEE
T ss_pred EECCCCCCChhHHHHHHHHHHHHHHhcc-CCeEEEEeCCHHHHHHh--hhhhceEEEEEEEEEcC------CcEEEEEEE
Confidence 9999999999999999899999998742 68999999999987631 23467999999986543 679999999
Q ss_pred ecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Q 043119 709 VPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQN 744 (792)
Q Consensus 709 ~~G~~~~s~gi~~A~~~g~p~~ii~~A~~~~~~~~~ 744 (792)
.+|++++|||++||+++|+|++||+||+++++.+++
T Consensus 763 ~~G~~~~S~gi~vA~~~GlP~~vi~rA~~~l~~le~ 798 (800)
T 1wb9_A 763 QDGAASKSYGLAVAALAGVPKEVIKRARQKLRELES 798 (800)
T ss_dssp EESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred EECCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999875
No 3
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=100.00 E-value=4.4e-91 Score=834.04 Aligned_cols=688 Identities=24% Similarity=0.363 Sum_probs=494.3
Q ss_pred ceEEEEEEcC-----------CeEEEEEEEcccccEEEEEEeCCCCCCccHHHHHhhcCCceEEeCCCCChhHHHHHhhh
Q 043119 2 QVYMACILHG-----------HRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSEESFLSALKR 70 (792)
Q Consensus 2 ~v~l~~i~~~-----------~~iGiA~~D~stg~l~i~e~~d~~~~~~~~~~~~~~q~~P~iIi~~~~~~~~~~~~l~~ 70 (792)
++||++++.. ..+|+||+|+|||+|.++++.|+..+......+.+++|+ ++|+.++. .....+.++.
T Consensus 149 ~nyL~ai~~~~~~~~~~~~~~~~~Gla~~D~sTGef~~~~f~d~~~~~~L~~~L~~~~P~-Eil~~~~~-~~~~~~~~~~ 226 (918)
T 3thx_B 149 TSYLLCISENKENVRDKKKGNIFIGIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPV-ELLLPSAL-SEQTEALIHR 226 (918)
T ss_dssp CCCEEEEEEEC---------CEEEEEEEEETTTTEEEEEEEEECTTCHHHHHHHHHHCCS-EEEEESSC-CHHHHHHHHH
T ss_pred CcEEEEEEecccccccccccCceEEEEEEEccCCeEEEEEecCchhHHHHHHHHHhcCCe-EEEecCCc-chHHHHHHHh
Confidence 6899998532 159999999999999999998875443333445555443 55555543 2222222221
Q ss_pred c---CCCCCCceeeeccCCCCCHHHHHHHHHhhhcccCCCCCchhhHHhhhhccccCCchHHHHHHHHHHHHHhhcccch
Q 043119 71 S---DGTTEAPTVKLVKSSIFSYEQAWHRLIYLRVTGMDDGLSIKERICYLNSMMDMGSEVQVRASGGLLAVLENERIVD 147 (792)
Q Consensus 71 ~---~~~~~~~~v~~~~~~~F~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~s~~~~~~~~~i~Algall~yl~~~~~~~ 147 (792)
. ........++..+.+.|++..+...|..+......++.+.. .+..+.+ ....+++|+||+++||+.++...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~f~~~~a~~~l~~~f~~~~l~~~g~~----~~~~~~~-~~~~~~~A~gall~Yl~~~~~~~ 301 (918)
T 3thx_B 227 ATSVSVQDDRIRVERMDNIYFEYSHAFQAVTEFYAKDTVDIKGSQ----IISGIVN-LEKPVICSLAAIIKYLKEFNLEK 301 (918)
T ss_dssp HHHSSCSSSCCEEEEECGGGTSHHHHHHHHHHHCC------------------CCC-CCHHHHHHHHHHHHHHHHTTCGG
T ss_pred hhcccccccceeEEeccccccChhHHHHHHHHHhCccccccccch----hhhhhhc-ccHHHHHHHHHHHHHHHHhcccc
Confidence 1 10011124566778899999988888733221111222221 1122222 23568999999999998765421
Q ss_pred hhhhhccCCccccccceEEE-ccCCcEEecHHHHHhccCccCCCCCCCCCCCCcCccccHhhhccccCCchhhHHHHHHh
Q 043119 148 TLEQKESGNASITIDSVIEV-SLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWF 226 (792)
Q Consensus 148 ~l~~~~~~~~~~~i~~~~~~-~~~~~m~iD~~Tl~~LeI~~~~~~~s~~~~g~~k~~~SLf~lLN~t~T~~G~RLLr~wL 226 (792)
. ..++..+..+ ..+++|.||++|++||||++|..++ .+. +|||++||||+||||+||||+||
T Consensus 302 ~---------l~~~~~~~~~~~~~~~m~LD~~T~rnLEL~~~~~~~-------~~~-gSLl~~Ld~t~T~mG~RlLr~Wl 364 (918)
T 3thx_B 302 M---------LSKPENFKQLSSKMEFMTINGTTLRNLEILQNQTDM-------KTK-GSLLWVLDHTKTSFGRRKLKKWV 364 (918)
T ss_dssp G---------GSCGGGEEESCCTTTBCEECHHHHHHTTSSSCTTTC-------SST-TSHHHHHCCCSSHHHHHHHHHHH
T ss_pred c---------ccccccceeecCCCCEEEECHHHHHhcCCcccCCCC-------CCC-CcHHHHHhhCCChHHHHHHHHHH
Confidence 1 1334555555 6789999999999999999987532 223 49999999999999999999999
Q ss_pred hccCCChHHHHHHHHHHHHHH-cCHHHHHHHHHhcccCCChhHHHHhhcCCCCccCHHHHHHHHHHHHHHH-HHHHHHhh
Q 043119 227 LRPILDLENLNSRLNAISFFL-CSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLL-HVNKIFEV 304 (792)
Q Consensus 227 ~~Pl~d~~~I~~R~daVe~l~-~~~~l~~~l~~~Lk~i~Dieril~ri~~~~~~~~~~d~~~l~~~i~~l~-~l~~~l~~ 304 (792)
++||+|+++|+.|||+|++|. ++..++..++..|++++|+||+++|+..++ ++++|+..+.+++..+. .+...+..
T Consensus 365 ~~PL~d~~~I~~R~daVe~l~~~~~~~~~~l~~~L~~i~DleRll~ri~~~~--~~~~dl~~l~~~l~~l~~~l~~~l~~ 442 (918)
T 3thx_B 365 TQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIERGLCSIYHKK--CSTQEFFLIVKTLYHLKSEFQAIIPA 442 (918)
T ss_dssp HSCBCCHHHHHHHHHHHHHHHSCCCTHHHHHHHTTTTCCCHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcCCCHHHHHHHHHHHHHHHhCCcHHHHHHHHHHccCccHHHHHHHhccCc--CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999997 456789999999999999999999999864 78999998888877655 33332211
Q ss_pred cCchHHHHHHHhhchhHHHHHHHhhhH---hHHHHHHHHHhhhccCcccccccCcccccC-cChhHHHHHHHHHhhHHHH
Q 043119 305 GISESLREQLRLLNFDIVEKAASCITT---ELAYVYELVIGIIDVNRSKEKGYGTLVREG-FCDELDELRQIYEELPEFL 380 (792)
Q Consensus 305 ~~~~~l~~~l~~~~~~l~~~~~~~i~~---~l~~i~~~i~~~Id~~~~~~~~~~~~Ik~g-~~~eLD~lr~~~~~l~~~L 380 (792)
+ .......++..+...+++ .+.. +.+.|+.+.....+...+++.+ -.++|+.+++.+.++.+.+
T Consensus 443 -----~---~~~~~~~lL~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 510 (918)
T 3thx_B 443 -----V---NSHIQSDLLRTVILEIPELLSPVEH----YLKILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQGVIDEI 510 (918)
T ss_dssp -----H---HHTCCCHHHHHHHTHHHHHTGGGHH----HHTTSCHHHHHHTCSTTSCSCGGGCHHHHHHHHHHHHHHHHH
T ss_pred -----h---hhhccCHHHHHHHHhhhhhHHHHHH----HHHHHHHhhhhcCCccccccccccCHHHHHHHHHHHHHHHHH
Confidence 0 000111222222211111 1111 1223332111111111122222 2356666666666655555
Q ss_pred HHHHHHHHhhCcccccccccCeEEEEcccc--eEEEEeccccchhhhhhcCCceEEEEeecCCeeEEEEeChhhHHHHHH
Q 043119 381 EEVASLELVQLPHLCKEMFVPCIVYIHQIG--YLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNL 458 (792)
Q Consensus 381 ~~~~~~~~~~l~~~~~~~~~~~i~~~~~~G--y~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (792)
++........+ +.+++.|+...| |+++|+.. ....+|+. +...+ ..++..+|.|+++++++++
T Consensus 511 ~~~l~~~~~~i-------~~~~~~~~~~~g~~y~iev~~~-----~~~~vp~~-~~~~~--~~~~~~rf~tpel~~~~~~ 575 (918)
T 3thx_B 511 RMHLQEIRKIL-------KNPSAQYVTVSGQEFMIEIKNS-----AVSCIPTD-WVKVG--STKAVSRFHSPFIVENYRH 575 (918)
T ss_dssp HHHHHHHHHHH-------TCTTCCCEEETTEEEEEEEETT-----SGGGSCSS-CEEEE--ECSSEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHh-------CcccceeEeecCCEEEEEEcHH-----HHhhCCCe-EEEEE--ecCCeeEEECHHHHHHHHH
Confidence 54443222222 123456777777 99998643 23456763 22222 2344568999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCceecCCCcEEEecccceeeecc-
Q 043119 459 LGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMT- 537 (792)
Q Consensus 459 ~~~~~~~i~~~~~~i~~~l~~~~~~~~~~l~~~~~~i~~lD~~~s~a~~a~~~~~~~P~~~~~~~l~i~~~~hp~~~~~- 537 (792)
+..+.+++...+.+.+.++...+.++.+.|..+++.+|+|||++|+|.+|...+||||+++++..+.++++|||+++..
T Consensus 576 ~~~~~e~~~~~e~~~~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~~~i~i~~~rHP~le~~~ 655 (918)
T 3thx_B 576 LNQLREQLVLDCSAEWLDFLEKFSEHYHSLCKAVHHLATVDCIFSLAKVAKQGDYCRPTVQEERKIVIKNGRHPVIDVLL 655 (918)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHTSSSCBCCEEESSCEEEEEEECCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCcccCCCcEEEEeccchhhhhhh
Confidence 9999988888899999999999999999999999999999999999999999999999999888999999999999842
Q ss_pred --cCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeeccc--------ccchhhccch
Q 043119 538 --VDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSS 606 (792)
Q Consensus 538 --~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~--------~~~~~~~~s~ 606 (792)
.+.+||||++|+.+ |++++||||||||||||||++|++++|+|+|++||+..+.+++++ .+.+..+.|+
T Consensus 656 ~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~st 735 (918)
T 3thx_B 656 GEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRST 735 (918)
T ss_dssp CSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CC
T ss_pred ccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHH
Confidence 35899999999987 999999999999999999999999999999999999999988887 3456678999
Q ss_pred hHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhcCCCCCCC-ceeEE
Q 043119 607 FMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSE-RLKFY 685 (792)
Q Consensus 607 f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~~~~~~~~-~v~~~ 685 (792)
|+.||++++.++..+++|+||||||||+||||.++.++++++++++.+. .++++|++|||+++++.. ...+ +|.++
T Consensus 736 fs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~-~g~tvl~vTH~~el~~l~--~~~~~~v~n~ 812 (918)
T 3thx_B 736 FMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRD-VKSLTLFVTHYPPVCELE--KNYSHQVGNY 812 (918)
T ss_dssp HHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHT-TCCEEEEECSCGGGGGHH--HHTTTTEEEE
T ss_pred hhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHh-cCCeEEEEeCcHHHHHHH--hhcccceEEE
Confidence 9999999999999999999999999999999999999999999999763 268999999999998632 1123 59999
Q ss_pred EEEEeeccCCC--------CCCCceEEeEEeecCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Q 043119 686 TMSVLRPENNS--------TDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNN 745 (792)
Q Consensus 686 ~~~~~~~~~~~--------~~~~~~~~~y~l~~G~~~~s~gi~~A~~~g~p~~ii~~A~~~~~~~~~~ 745 (792)
||.+...++.. .+.+.++|+|||.+|+|++|||++||+++|+|++||+||+++++++++.
T Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~l~flykl~~G~~~~S~gi~vA~~aGlp~~vi~rA~~~~~~LE~~ 880 (918)
T 3thx_B 813 HMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAAHKSKELEGL 880 (918)
T ss_dssp EEEEECC-----------------CCEEEEEEESCCCTTTTHHHHTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcccccccccccccCCCCceeEeeeeccCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHHHHHH
Confidence 99986432210 0135799999999999999999999999999999999999999998753
No 4
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=100.00 E-value=8.7e-87 Score=787.22 Aligned_cols=626 Identities=26% Similarity=0.381 Sum_probs=502.9
Q ss_pred ceEEEEEEcCCeEEEEEEEcccccEEEEEEeCCCCCCccHHHHHhhcCCceEEeCCCCChhHHHHHhhhcCCCCCCceee
Q 043119 2 QVYMACILHGHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSEESFLSALKRSDGTTEAPTVK 81 (792)
Q Consensus 2 ~v~l~~i~~~~~iGiA~~D~stg~l~i~e~~d~~~~~~~~~~~~~~q~~P~iIi~~~~~~~~~~~~l~~~~~~~~~~~v~ 81 (792)
++||++++.++.+|+||+|+|||+|+++++.|++ .....+.+ .+|..|+.+..... +.. .++
T Consensus 131 ~n~l~ai~~~~~~Gla~~D~stg~~~~~~~~d~~---~l~~~l~~--~~P~Eil~~~~~~~-----~~~--------~~~ 192 (765)
T 1ewq_A 131 ANYLAAIATGDGWGLAFLDVSTGEFKGTVLKSKS---ALYDELFR--HRPAEVLLAPELLE-----NGA--------FLD 192 (765)
T ss_dssp CCCEEEEEESSSEEEEEEETTTTEEEEEEESSHH---HHHHHHHH--HCCSEEEECHHHHH-----CHH--------HHH
T ss_pred CcEEEEEEeCCEEEEEEEECCCCEEEEEEecCHH---HHHHHHHh--cCCeEEEecCChHH-----HHH--------Hhh
Confidence 6789999877789999999999999999987641 12233444 46644443322111 111 011
Q ss_pred eccCCCCCHHHHHHHHHhhhcccCCCCCchhhHHhhhhccccCCchHHHHHHHHHHHHHhhcccchhhhhhccCCccccc
Q 043119 82 LVKSSIFSYEQAWHRLIYLRVTGMDDGLSIKERICYLNSMMDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASITI 161 (792)
Q Consensus 82 ~~~~~~F~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~s~~~~~~~~~i~Algall~yl~~~~~~~~l~~~~~~~~~~~i 161 (792)
..+.+ |+. ..|. ..++.. + .....+++|+|||++|++.++. ... . +
T Consensus 193 ~~~~~-f~~----~~l~--------~~~~~~-------~---~~~~~~~~a~g~ll~Yl~~~~~---------~~~-~-~ 238 (765)
T 1ewq_A 193 EFRKR-FPV----MLSE--------APFEPE-------G---EGPLALRRARGALLAYAQRTQG---------GAL-S-L 238 (765)
T ss_dssp HHHHH-CCS----EEEC--------CCCCCC-------S---SSCHHHHHHHHHHHHHHHHHHT---------SCC-C-C
T ss_pred hcccc-cCH----HHHH--------HHhccc-------c---cCCHHHHHHHHHHHHHHHHhhh---------ccc-c-c
Confidence 11122 322 1110 000000 0 1126789999999999987642 112 3 6
Q ss_pred cceEEEccCCcEEecHHHHHhccCccCCCCCCCCCCCCcCccccHhhhccccCCchhhHHHHHHhhccCCChHHHHHHHH
Q 043119 162 DSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLN 241 (792)
Q Consensus 162 ~~~~~~~~~~~m~iD~~Tl~~LeI~~~~~~~s~~~~g~~k~~~SLf~lLN~t~T~~G~RLLr~wL~~Pl~d~~~I~~R~d 241 (792)
..+..+..+++|.||.+|+++|||+++.+ | + +|||+++|+|+|+||+|+||+||++|++|.++|+.||+
T Consensus 239 ~~~~~~~~~~~m~lD~~t~~~LEl~~~~~-------~---~-gsL~~~ld~t~T~~G~RlL~~wl~~Pl~d~~~I~~R~~ 307 (765)
T 1ewq_A 239 QPFRFYDPGAFMRLPEATLRALEVFEPLR-------G---Q-DTLFSVLDETRTAPGRRLLQSWLRHPLLDRGPLEARLD 307 (765)
T ss_dssp CCCEECCGGGSCBCCHHHHHHTTSSSCSS-------S---C-CCHHHHHCCCSSHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred CCcEEECCCCeEEecHHHHHhCcCccCCC-------c---c-chHHHHhCCCCCHHHHHHHHHHhhCcCCCHHHHHHHHH
Confidence 77889999999999999999999998753 1 2 49999999999999999999999999999999999999
Q ss_pred HHHHHHcCHHHHHHHHHhcccCCChhHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhhchhH
Q 043119 242 AISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDI 321 (792)
Q Consensus 242 aVe~l~~~~~l~~~l~~~Lk~i~Dieril~ri~~~~~~~~~~d~~~l~~~i~~l~~l~~~l~~~~~~~l~~~l~~~~~~l 321 (792)
+|++|.+++.++..++..|++++|++|++.|+..+ ..+++||..+.+++..+..+.+.+.. .
T Consensus 308 ~V~~l~~~~~~~~~l~~~L~~~~Dler~l~r~~~~--~~~~~dl~~l~~~l~~~~~l~~~l~l--~-------------- 369 (765)
T 1ewq_A 308 RVEGFVREGALREGVRRLLYRLADLERLATRLELG--RASPKDLGALRRSLQILPELRALLGE--E-------------- 369 (765)
T ss_dssp HHHHHHHCHHHHHHHHHHHTTCCCHHHHHHHHHTT--CCCHHHHHHHHHHHHHHHHHHHHHCT--T--------------
T ss_pred HHHHHHhCHHHHHHHHHHHhcCCCHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHHHH--H--------------
Confidence 99999999999999999999999999999999875 47899999998888877776665530 0
Q ss_pred HHHHHHhhhHhHHHHHHHHHhhhccCcccccccCcccccCcChhHHHHHHHHHhhHHHHHHHHHHHHhhCcccccccccC
Q 043119 322 VEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVP 401 (792)
Q Consensus 322 ~~~~~~~i~~~l~~i~~~i~~~Id~~~~~~~~~~~~Ik~g~~~eLD~lr~~~~~l~~~L~~~~~~~~~~l~~~~~~~~~~ 401 (792)
..+ ..+..+.+.|..+|+.+.......+..|++|++++||++|+.+++..+++.++...+.++.. ...+
T Consensus 370 -----~~l-~~~~~l~~~i~~~i~~~~~~~~~~~~~i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~-----~~~l 438 (765)
T 1ewq_A 370 -----VGL-PDLSPLKEELEAALVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVAYFLELEERERERTG-----IPTL 438 (765)
T ss_dssp -----SCC-CCCHHHHHHHHHHBCSSCCSCTTSSCCBCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CTTC
T ss_pred -----hcc-ccHHHHHHHHHHHhcccchhhhccCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCce
Confidence 001 13445556677788876544333356799999999999999999999999888766554432 1245
Q ss_pred eEEEEcccceEEEEeccccchhhhhhcCCceEEEEeecCCeeEEEEeChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043119 402 CIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHI 481 (792)
Q Consensus 402 ~i~~~~~~Gy~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~i~~~l~~~~ 481 (792)
++.|++..||+++++.. ....+|+. +...+..+ +..+|.+++++++++++.++..++.+++.+++.+|.+.+
T Consensus 439 ~i~~~~~~gy~i~v~~~-----~~~~vp~~-~i~~~s~~--~~~rf~tp~l~el~~~i~~~~~~~~~~e~~i~~~L~~~i 510 (765)
T 1ewq_A 439 KVGYNAVFGYYLEVTRP-----YYERVPKE-YRPVQTLK--DRQRYTLPEMKEKEREVYRLEALIRRREEEVFLEVRERA 510 (765)
T ss_dssp EEEEETTTEEEEEEEGG-----GGGGSCTT-CEEEEECS--SEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeccceeEEEEeehH-----hhhcCCcc-eEEEEecc--CCcEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999753 23456763 22222222 345789999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCceecCCCcEEEecccceeeecccCceeccceeecCCCcEEEEEcCC
Q 043119 482 CLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTVDTFIPNDTRIDNDGRINIITGPN 561 (792)
Q Consensus 482 ~~~~~~l~~~~~~i~~lD~~~s~a~~a~~~~~~~P~~~~~~~l~i~~~~hp~~~~~~~~~v~n~~~~~~~~~~~~ltGpN 561 (792)
..+.+.|..+.+++++||+++|+|.+|...+||+|++ ++.+.++++|||+++. .+.+||||++|+ |++++|||||
T Consensus 511 ~~~~~~l~~~~~~la~LD~l~s~a~~a~~~~~~~P~~--~~~i~i~~~rHP~le~-~~~~vl~disl~--g~i~~I~GpN 585 (765)
T 1ewq_A 511 KRQAEALREAARILAELDVYAALAEVAVRYGYVRPRF--GDRLQIRAGRHPVVER-RTEFVPNDLEMA--HELVLITGPN 585 (765)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBCCEE--SSSEEEEEECCTTGGG-TSCCCCEEEEES--SCEEEEESCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhCCceeecc--CCcEEEEEeECceEcc-CCceEeeeccCC--CcEEEEECCC
Confidence 9999999999999999999999999999999999999 5679999999999986 568999999999 8999999999
Q ss_pred CCCchhHHHHHHHHHHHhhcCccccCCceeeeccc--------ccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeCCC
Q 043119 562 YSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFG 633 (792)
Q Consensus 562 ~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~--------~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~~ 633 (792)
|||||||||+++++.+++|.|+++|+..+.+++++ .+++..+.|+|+.||.+++.++..+++++|+||||||
T Consensus 586 GsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~~~~~~~d~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpg 665 (765)
T 1ewq_A 586 MAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVG 665 (765)
T ss_dssp SSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTT
T ss_pred CCChHHHHHHHHhhhhhcccCceeehhccceeeHHHhhccCCHHHHHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCC
Confidence 99999999999999999999999999988888877 3456678999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhcCCCCCCCceeEEEEEEeeccCCCCCCCceEEeEEeecCCC
Q 043119 634 KGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHA 713 (792)
Q Consensus 634 ~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~ 713 (792)
+||++.|+.++++++++++.+. ++++|++||+++++.. . .+.+.++||.+.... ++++|+|+|.+|++
T Consensus 666 rGTs~lD~~~~~~~i~~~L~~~--g~~vl~~TH~~~l~~~---~-~~~v~n~~~~~~~~~------~~l~f~ykl~~G~~ 733 (765)
T 1ewq_A 666 RGTSSLDGVAIATAVAEALHER--RAYTLFATHYFELTAL---G-LPRLKNLHVAAREEA------GGLVFYHQVLPGPA 733 (765)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHH--TCEEEEECCCHHHHTC---C-CTTEEEEEEEEECCS------SSCEEEEEEEESCC
T ss_pred CCCCCcCHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHh---h-hhcceEEEEEEEEcC------CeEEEEEEEEECCC
Confidence 9999999999988999999874 6899999999999863 2 578999999986432 67999999999999
Q ss_pred CCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Q 043119 714 LLSYGLHCALLAGVPAEVIKRAAYVLEAAQN 744 (792)
Q Consensus 714 ~~s~gi~~A~~~g~p~~ii~~A~~~~~~~~~ 744 (792)
++|||++||+++|+|++||+||+++++++++
T Consensus 734 ~~Sygi~vA~~aGlP~~VI~rA~~~l~~le~ 764 (765)
T 1ewq_A 734 SKSYGVEVAAMAGLPKEVVARARALLQAMAA 764 (765)
T ss_dssp SSCCHHHHHHHTTCCHHHHHHHHHHHHHHTT
T ss_pred CCchHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998874
No 5
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=100.00 E-value=1.4e-86 Score=808.17 Aligned_cols=702 Identities=23% Similarity=0.323 Sum_probs=488.7
Q ss_pred ceEEEEEEc------C--CeEEEEEEEcccccEEEEEEeCCCCCCccHHHHHhhcCCce-EEeCCCCChhHHHHHhhhcC
Q 043119 2 QVYMACILH------G--HRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQ-IIYTSTKSEESFLSALKRSD 72 (792)
Q Consensus 2 ~v~l~~i~~------~--~~iGiA~~D~stg~l~i~e~~d~~~~~~~~~~~~~~q~~P~-iIi~~~~~~~~~~~~l~~~~ 72 (792)
++||++|.. + ..+|+||+|+|||+|+++|+.|+..+ ..+...+.+.+|. +|+.++..+....+.++...
T Consensus 198 ~n~l~ai~~~~~~~~~~~~~~Gla~~D~sTGe~~~~e~~d~~~~--~~L~~~L~~~~P~Eil~~~~~~~~~~~~~~~~~~ 275 (1022)
T 2o8b_B 198 SKYLLSLKEKEEDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHC--SRFRTLVAHYPPVQVLFEKGNLSKETKTILKSSL 275 (1022)
T ss_dssp CCEEEEEEEEECSCC-CCEEEEEEEECTTTCCEEEEEEEECSSC--HHHHHHHHHSCEEEEEEETTTCCHHHHHHHTTTT
T ss_pred CcEEEEEEEccccccCCCcEEEEEEEECCCCEEEEEEecCchHH--HHHHHHHHhcCCcEEEecCCccchHHHHHHHhhh
Confidence 678999863 1 27999999999999999999877433 3334344556775 55544434444444444321
Q ss_pred CCCCCceeee-ccC-CCCCHHHHHHHHH---hhhcccCC-CCCchhhHHhh----hhcccc---CCchHHHHHHHHHHHH
Q 043119 73 GTTEAPTVKL-VKS-SIFSYEQAWHRLI---YLRVTGMD-DGLSIKERICY----LNSMMD---MGSEVQVRASGGLLAV 139 (792)
Q Consensus 73 ~~~~~~~v~~-~~~-~~F~~~~~~~~l~---~l~~~~~~-~~~~~~~~~~~----l~s~~~---~~~~~~i~Algall~y 139 (792)
. ...... .+. .+|+...+...+. ++...... ++......+.. +.++.. .+...+++|+|||++|
T Consensus 276 ~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~A~gall~Y 352 (1022)
T 2o8b_B 276 S---CSLQEGLIPGSQFWDASKTLRTLLEEEYFREKLSDGIGVMLPQVLKGMTSESDSIGLTPGEKSELALSALGGCVFY 352 (1022)
T ss_dssp T---TSEEEEECBTTTBCCHHHHHHHHHHTTTTSSSSCCCC-CCCCHHHHHTEECCSTTCSEECGGGHHHHHHHHHHHHH
T ss_pred h---hhhhhhcccchhhcchhhHHhhhhhhhhcccccccccchhhHHHHHHhhcchhhcccccccccHHHHHHHHHHHHH
Confidence 1 111111 133 3466666655543 22211100 00011111111 011100 1246789999999999
Q ss_pred HhhcccchhhhhhccCCccccccc------------eEEEccCCcEEecHHHHHhccCccCCCCCCCCCCCCcCccccHh
Q 043119 140 LENERIVDTLEQKESGNASITIDS------------VIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVF 207 (792)
Q Consensus 140 l~~~~~~~~l~~~~~~~~~~~i~~------------~~~~~~~~~m~iD~~Tl~~LeI~~~~~~~s~~~~g~~k~~~SLf 207 (792)
|+.++....+.+. .++ .++.. ..++..+++|.||++|++||||+++..++ .++ +|||
T Consensus 353 l~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~m~LD~~T~~nLEl~~~~~~g-------~~~-gSLl 421 (1022)
T 2o8b_B 353 LKKCLIDQELLSM--ANF-EEYIPLDSDTVSTTRSGAIFTKAYQRMVLDAVTLNNLEIFLNGTNG-------STE-GTLL 421 (1022)
T ss_dssp HHHHTCHHHHHTT--CCE-EECCCGGGGTCC---------CCCCBCBCCHHHHHHTTCSSCCSSS-------SCC-CSHH
T ss_pred HHHhCcchhhhcc--ccc-cccccccccccccccccccccCCCCeEEeCHHHHHhhcCCccCCCC-------CCC-CcHH
Confidence 9987653222111 111 11111 12367799999999999999999986532 233 4999
Q ss_pred hhccccCCchhhHHHHHHhhccCCChHHHHHHHHHHHHHHcCHHHHHHHHHhcccCCChhHHHHhhcC-CCCc-------
Q 043119 208 GMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNS-PSFI------- 279 (792)
Q Consensus 208 ~lLN~t~T~~G~RLLr~wL~~Pl~d~~~I~~R~daVe~l~~~~~l~~~l~~~Lk~i~Dieril~ri~~-~~~~------- 279 (792)
++||||+||||+||||+||++||+|+++|+.|||+|++|+++++++..+++.|++++|+||+++|+.. ++..
T Consensus 422 ~~Ld~t~T~mG~RLLr~WL~~PL~d~~~I~~RldaVe~l~~~~~~~~~l~~~L~~i~DlERll~Ri~~~~~~~~~~~~~~ 501 (1022)
T 2o8b_B 422 ERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKIHNVGSPLKSQNHPD 501 (1022)
T ss_dssp HHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHCHHHHHHCGG
T ss_pred HHhCcCCCchhHHHHHHHHhCccCCHHHHHHHHHHHHHHHhChHHHHHHHHHHhcCccHHHHHHHHHhcCCcccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999976 2200
Q ss_pred ----------cCHH---HHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHhhchhHHHHHHHhh-------hHhHHHHHHH
Q 043119 280 ----------YTAS---DWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCI-------TTELAYVYEL 339 (792)
Q Consensus 280 ----------~~~~---d~~~l~~~i~~l~~l~~~l~~~~~~~l~~~l~~~~~~l~~~~~~~i-------~~~l~~i~~~ 339 (792)
.+++ ++...+..+..+..+...+... .......++..+.... -+.+......
T Consensus 502 ~~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~i~~~l~~~--------~~~~~s~lL~~~~~~~~~~~~~~~~~l~~~~~~ 573 (1022)
T 2o8b_B 502 SRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEV--------ADGFKSKILKQVISLQTKNPEGRFPDLTVELNR 573 (1022)
T ss_dssp GGCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HTTCCCHHHHHHTSBTTTSSSSCBCCCHHHHHH
T ss_pred hhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhh--------hcccCcHHHHHHHHhhccccccchHHHHHHHHH
Confidence 1233 3333333344444444444210 0001112222221110 0233344445
Q ss_pred HHhhhccCcccccccCcccccCcChhHHHHHHHHHhhHHHHHHHHHHHHhhCcccccccccCeEEEE--cccceEEEEec
Q 043119 340 VIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYI--HQIGYLMCIFE 417 (792)
Q Consensus 340 i~~~Id~~~~~~~~~~~~Ik~g~~~eLD~lr~~~~~l~~~L~~~~~~~~~~l~~~~~~~~~~~i~~~--~~~Gy~i~v~~ 417 (792)
+..+||.+.....+ ...+++|++++||++|+.+.+..+++.++...+...+. ..++.|. ...+|+++++.
T Consensus 574 ~~~~id~~~~~~~g-~i~~~~g~~~~ld~~r~~~~~~~~~l~~~~~~~~~~~~-------~~~l~~~~~~~~~y~i~v~~ 645 (1022)
T 2o8b_B 574 WDTAFDHEKARKTG-LITPKAGFDSDYDQALADIRENEQSLLEYLEKQRNRIG-------CRTIVYWGIGRNRYQLEIPE 645 (1022)
T ss_dssp HHTTSCHHHHHHSC-CCCCTTCC-CHHHHHHHHHHHHHHHHHHHHTSSGGGSS-------CSCCEEECCGGGCCEEEECT
T ss_pred HHHHhCchhhhcCC-cEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCceeEEEecCceEEEEEeh
Confidence 56777765333222 23459999999999999999998888766543332221 1134454 35679999864
Q ss_pred cccchhhhhh-cCCceEEEEeecCCeeEEEEeChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 043119 418 EKLDDTTLEQ-LQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAA 496 (792)
Q Consensus 418 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~i~~~l~~~~~~~~~~l~~~~~~i~ 496 (792)
.. ... +|+. +...++.+ ...+|.|++++++..++..+++++..++.+++.++...+.++.+.|..+.++++
T Consensus 646 ~~-----~~~~vp~~-~~~~~t~~--~~~rf~t~el~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~la 717 (1022)
T 2o8b_B 646 NF-----TTRNLPEE-YELKSTKK--GCKRYWTKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIA 717 (1022)
T ss_dssp TT-----TSSCCCC--CEEEEETT--EEEECCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred hh-----hcccCCCc-eEEeeecc--CccEEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 223 5653 22222222 345789999999999999888888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh--hCCCCCceec----CCCcEEEecccceeeecc--cCceeccceeecCC--------CcEEEEEcC
Q 043119 497 ELDCFLSLALVAH--QNNYMRPILT----LEPLLDIQNGRHVLQEMT--VDTFIPNDTRIDND--------GRINIITGP 560 (792)
Q Consensus 497 ~lD~~~s~a~~a~--~~~~~~P~~~----~~~~l~i~~~~hp~~~~~--~~~~v~n~~~~~~~--------~~~~~ltGp 560 (792)
+||+++|+|.+|. ..+||+|++. +++.|.++++|||+++.. .+.+||||++|+.+ |++++||||
T Consensus 718 ~lD~l~s~A~~a~~~~~~~~~P~~~~~~~~~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGp 797 (1022)
T 2o8b_B 718 VLDVLLCLANYSRGGDGPMCRPVILLPEDTPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGP 797 (1022)
T ss_dssp HHHHHHHHHHHTTCSSSCEECCEECCTTTSCCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECC
T ss_pred HHHHHHhHHHHHhhccCCccCCccccCCCCCceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECC
Confidence 9999999999999 7899999998 556799999999998753 35799999999864 599999999
Q ss_pred CCCCchhHHHHHHHHHHHhhcCccccCCceeeeccc--------ccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeCC
Q 043119 561 NYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD--------SKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEF 632 (792)
Q Consensus 561 N~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~--------~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~ 632 (792)
||||||||||++|++.+|||+|+|||++.+.++++| .+.+..+.|+|+.||.+++.++..+++++|||||||
T Consensus 798 NgsGKSTlLr~iGl~~~~aqiG~~Vpq~~~~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~al~la~~~sLlLLDEp 877 (1022)
T 2o8b_B 798 NMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDEL 877 (1022)
T ss_dssp TTSSHHHHHHHHHHHHHHHTTTCCEESSEEEECCCSBEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEECT
T ss_pred CCCChHHHHHHHHHHHHHhheeEEeccCcCCCCHHHHHHHHcCCHHHHhhchhhhHHHHHHHHHHHHhCCCCcEEEEECC
Confidence 999999999999999999999999999999888887 344556789999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhcCCCCCCCceeEEEEEEeeccCCC-CCCCceEEeEEeecC
Q 043119 633 GKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNS-TDVEDIVFLYRLVPG 711 (792)
Q Consensus 633 ~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~y~l~~G 711 (792)
|+|||+.+|.++++++++++.+.. ++++||+|||++++.. +.....+.+.||.+....... .+.+.++|+|++.+|
T Consensus 878 ~~Gtd~~dg~~~~~~il~~L~~~~-g~~vl~~TH~~el~~~--~~d~~~v~~g~~~~~~~~~~~~~~~~~l~~ly~l~~G 954 (1022)
T 2o8b_B 878 GRGTATFDGTAIANAVVKELAETI-KCRTLFSTHYHSLVED--YSQNVAVRLGHMACMVENECEDPSQETITFLYKFIKG 954 (1022)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHTS-CCEEEEECCCHHHHHH--TSSCSSEEEEEEEEC-------------CEEEEEESS
T ss_pred CCCCChHHHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHHH--hCCcceeecCeEEEEEecCcccCCCCceEEEeeecCC
Confidence 999999999999999999998752 6799999999999874 234456778888754322111 123679999999999
Q ss_pred CCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCh
Q 043119 712 HALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNK 746 (792)
Q Consensus 712 ~~~~s~gi~~A~~~g~p~~ii~~A~~~~~~~~~~~ 746 (792)
++++|||++||+++|+|++||+||+++++.+++..
T Consensus 955 ~~~~Sygi~vA~l~Glp~~vi~rA~~~~~~le~~~ 989 (1022)
T 2o8b_B 955 ACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMN 989 (1022)
T ss_dssp CCCCCHHHHHHHHTTCCHHHHHHHHHHHHHTTSST
T ss_pred CCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998754
No 6
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.63 E-value=5.6e-16 Score=161.80 Aligned_cols=145 Identities=16% Similarity=0.115 Sum_probs=95.3
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhc
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------------------SHI 581 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------------------aq~ 581 (792)
.+.+++....+ .+..+.++++|+.. |++++|+||||||||||+|+++++.-. ++.
T Consensus 11 ~l~~~~l~~~~----~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 86 (266)
T 4g1u_C 11 LLEASHLHYHV----QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86 (266)
T ss_dssp EEEEEEEEEEE----TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHH
T ss_pred eEEEEeEEEEe----CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhhe
Confidence 46666665554 34667889999988 999999999999999999999865411 111
Q ss_pred CccccCCceee---eccc---------------------------ccchhhccchhHHHHHH-HHHHHHhCC------CC
Q 043119 582 GSFVPADAATV---GLTD---------------------------SKHMTAEQSSFMIDLHQ-VGMMLRQAT------SQ 624 (792)
Q Consensus 582 g~~vpa~~~~~---~~~~---------------------------~~~~~~~~s~f~~e~~~-~~~~l~~~~------~~ 624 (792)
..++|...... .+.+ ........+.++.+++| ++.+...+. +|
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p 166 (266)
T 4g1u_C 87 RAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTP 166 (266)
T ss_dssp EEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCC
T ss_pred EEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCC
Confidence 22344332110 0000 00111123445544444 333333455 99
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 625 SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 625 slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
+++|+|||++|.|+.....+. .+++.+.+.+ +.++|++||+++.+..
T Consensus 167 ~lLllDEPts~LD~~~~~~i~-~~l~~l~~~~-~~tvi~vtHdl~~~~~ 213 (266)
T 4g1u_C 167 RWLFLDEPTSALDLYHQQHTL-RLLRQLTRQE-PLAVCCVLHDLNLAAL 213 (266)
T ss_dssp EEEEECCCCSSCCHHHHHHHH-HHHHHHHHHS-SEEEEEECSCHHHHHH
T ss_pred CEEEEeCccccCCHHHHHHHH-HHHHHHHHcC-CCEEEEEEcCHHHHHH
Confidence 999999999999999988885 5777776542 5699999999998753
No 7
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.62 E-value=1.4e-15 Score=164.22 Aligned_cols=149 Identities=16% Similarity=0.168 Sum_probs=99.9
Q ss_pred CcEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH----------------------
Q 043119 522 PLLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL---------------------- 578 (792)
Q Consensus 522 ~~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l---------------------- 578 (792)
+.|.+++...-+-.......+.+|++|+.. |++++|+||||||||||+|+++++.-.
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 457777766544211112357899999998 999999999999999999999876411
Q ss_pred --hhcCccccCCceeeec---cc-----------------------------ccchhhccchhHHHHH-HHHHHHHhCCC
Q 043119 579 --SHIGSFVPADAATVGL---TD-----------------------------SKHMTAEQSSFMIDLH-QVGMMLRQATS 623 (792)
Q Consensus 579 --aq~g~~vpa~~~~~~~---~~-----------------------------~~~~~~~~s~f~~e~~-~~~~~l~~~~~ 623 (792)
.++| +||....-++. .+ .+......+.++.+++ +++.+.+.+.+
T Consensus 103 ~r~~Ig-~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~ 181 (366)
T 3tui_C 103 ARRQIG-MIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASN 181 (366)
T ss_dssp HHTTEE-EECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTC
T ss_pred HhCcEE-EEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 1222 45544321110 00 0001112345555554 44555556799
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 624 QSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 624 ~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
|+++|+|||++|+|+.....+. .+++.+.+. .+.++|++||+++.+..
T Consensus 182 P~lLLlDEPTs~LD~~~~~~i~-~lL~~l~~~-~g~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 182 PKVLLCDQATSALDPATTRSIL-ELLKDINRR-LGLTILLITHEMDVVKR 229 (366)
T ss_dssp CSEEEEESTTTTSCHHHHHHHH-HHHHHHHHH-SCCEEEEEESCHHHHHH
T ss_pred CCEEEEECCCccCCHHHHHHHH-HHHHHHHHh-CCCEEEEEecCHHHHHH
Confidence 9999999999999999998885 577777643 26799999999998753
No 8
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.62 E-value=2.1e-15 Score=156.42 Aligned_cols=141 Identities=15% Similarity=0.200 Sum_probs=94.4
Q ss_pred EEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhcC
Q 043119 524 LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------------------SHIG 582 (792)
Q Consensus 524 l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------------------aq~g 582 (792)
|.+++...-+ .+..+.++++|+.. |++++|+||||||||||||+++++.-. .++|
T Consensus 16 l~i~~l~~~y----~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~ 91 (256)
T 1vpl_A 16 VVVKDLRKRI----GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS 91 (256)
T ss_dssp EEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEE
T ss_pred EEEEEEEEEE----CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEE
Confidence 4555544332 23457889999988 999999999999999999999865411 1122
Q ss_pred ccccCCceeee---ccc-----------------------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEE
Q 043119 583 SFVPADAATVG---LTD-----------------------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLL 629 (792)
Q Consensus 583 ~~vpa~~~~~~---~~~-----------------------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvll 629 (792)
|||.....++ +.+ .+......++++.++ ++++.+...+.+|+++||
T Consensus 92 -~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllL 170 (256)
T 1vpl_A 92 -YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAIL 170 (256)
T ss_dssp -EECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred -EEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 4444322110 000 000111233455444 445555566899999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 630 DEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 630 DE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|||++|.|+.....+. .++..+.+. +.++|++||+++.+.
T Consensus 171 DEPts~LD~~~~~~l~-~~l~~l~~~--g~tiiivtHd~~~~~ 210 (256)
T 1vpl_A 171 DEPTSGLDVLNAREVR-KILKQASQE--GLTILVSSHNMLEVE 210 (256)
T ss_dssp ESTTTTCCHHHHHHHH-HHHHHHHHT--TCEEEEEECCHHHHT
T ss_pred eCCccccCHHHHHHHH-HHHHHHHhC--CCEEEEEcCCHHHHH
Confidence 9999999998888885 567777654 679999999998875
No 9
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.60 E-value=2.8e-15 Score=152.66 Aligned_cols=128 Identities=16% Similarity=0.129 Sum_probs=88.0
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH-------------------------hhcCccccCCceeee
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL-------------------------SHIGSFVPADAATVG 593 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l-------------------------aq~g~~vpa~~~~~~ 593 (792)
..+.++++|+.. |++++|+||||||||||||+++++.-. .++| |||.....++
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~-~v~q~~~l~~ 95 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLG-FVFQFHYLIP 95 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEE-EECSSCCCCT
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEE-EEecCcccCC
Confidence 457789999988 999999999999999999999765311 1122 4444321110
Q ss_pred ---ccc-----------------------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHH
Q 043119 594 ---LTD-----------------------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTED 640 (792)
Q Consensus 594 ---~~~-----------------------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~ 640 (792)
+.+ .+......++++.++ ++++.+...+.+|+++|+|||++|.|+..
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 175 (224)
T 2pcj_A 96 ELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSAN 175 (224)
T ss_dssp TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHH
T ss_pred CCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHH
Confidence 000 000111133455444 44555556679999999999999999988
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEccChhhh
Q 043119 641 GIGLLGGTINYFVTCDVPPKVLVCTHLTELL 671 (792)
Q Consensus 641 ~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~ 671 (792)
...+. .++..+.+. +.++|++||+.+.+
T Consensus 176 ~~~~~-~~l~~l~~~--g~tvi~vtHd~~~~ 203 (224)
T 2pcj_A 176 TKRVM-DIFLKINEG--GTSIVMVTHERELA 203 (224)
T ss_dssp HHHHH-HHHHHHHHT--TCEEEEECSCHHHH
T ss_pred HHHHH-HHHHHHHHC--CCEEEEEcCCHHHH
Confidence 88885 567777654 57999999998876
No 10
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.59 E-value=3.8e-15 Score=152.77 Aligned_cols=129 Identities=16% Similarity=0.192 Sum_probs=88.2
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH------------------------h-hcCccccCCceeee
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL------------------------S-HIGSFVPADAATVG 593 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l------------------------a-q~g~~vpa~~~~~~ 593 (792)
..+.++++|+.. |++++|+||||||||||||+++++.-. . ++| |||....-++
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~-~v~Q~~~l~~ 96 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIG-FVFQQFNLIP 96 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEE-EECTTCCCCT
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEE-EEecCCccCC
Confidence 357789999998 999999999999999999999765310 1 122 4444322110
Q ss_pred ---c---------------cc-----------------ccch-hhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCC
Q 043119 594 ---L---------------TD-----------------SKHM-TAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGT 636 (792)
Q Consensus 594 ---~---------------~~-----------------~~~~-~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt 636 (792)
+ .. .+.. ....+.++.++ ++++.+...+.+|+++|+|||++|.
T Consensus 97 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~L 176 (235)
T 3tif_A 97 LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWAL 176 (235)
T ss_dssp TSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTS
T ss_pred CCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 0 00 0000 11234445444 4555555668999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhh
Q 043119 637 LTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELL 671 (792)
Q Consensus 637 ~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~ 671 (792)
|+.....+. .++..+.+. .+.++|++||+++++
T Consensus 177 D~~~~~~i~-~~l~~l~~~-~g~tvi~vtHd~~~~ 209 (235)
T 3tif_A 177 DSKTGEKIM-QLLKKLNEE-DGKTVVVVTHDINVA 209 (235)
T ss_dssp CHHHHHHHH-HHHHHHHHH-HCCEEEEECSCHHHH
T ss_pred CHHHHHHHH-HHHHHHHHH-cCCEEEEEcCCHHHH
Confidence 999988885 566777542 157999999999965
No 11
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.59 E-value=4.3e-15 Score=154.59 Aligned_cols=142 Identities=16% Similarity=0.192 Sum_probs=95.8
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH-----------------------
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL----------------------- 578 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l----------------------- 578 (792)
.|.+++...-+ .+..+.++++|+.. |++++|+||||||||||||+++++.-.
T Consensus 24 ~l~i~~l~~~y----~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 99 (263)
T 2olj_A 24 MIDVHQLKKSF----GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVR 99 (263)
T ss_dssp SEEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHH
T ss_pred eEEEEeEEEEE----CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHh
Confidence 46776665444 23467889999988 999999999999999999999765411
Q ss_pred hhcCccccCCceeeec---cc------------------------------ccchhhccchhHHHH-HHHHHHHHhCCCC
Q 043119 579 SHIGSFVPADAATVGL---TD------------------------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQ 624 (792)
Q Consensus 579 aq~g~~vpa~~~~~~~---~~------------------------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~ 624 (792)
.++| |||.....++. .+ .+......++++.++ ++++.+...+.+|
T Consensus 100 ~~i~-~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p 178 (263)
T 2olj_A 100 EEVG-MVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEP 178 (263)
T ss_dssp HHEE-EECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CcEE-EEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCC
Confidence 0122 44443211100 00 000011123444444 4555555668999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 625 SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 625 slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+++|+|||++|.|+.....+. .+++.+.+. +.++|++||+++.+.
T Consensus 179 ~lllLDEPts~LD~~~~~~~~-~~l~~l~~~--g~tvi~vtHd~~~~~ 223 (263)
T 2olj_A 179 KIMLFDEPTSALDPEMVGEVL-SVMKQLANE--GMTMVVVTHEMGFAR 223 (263)
T ss_dssp SEEEEESTTTTSCHHHHHHHH-HHHHHHHHT--TCEEEEECSCHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHH-HHHHHHHhC--CCEEEEEcCCHHHHH
Confidence 999999999999998888885 577777664 579999999998875
No 12
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.58 E-value=5.9e-15 Score=159.24 Aligned_cols=143 Identities=17% Similarity=0.103 Sum_probs=94.8
Q ss_pred EEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh-----cC---------------
Q 043119 524 LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH-----IG--------------- 582 (792)
Q Consensus 524 l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq-----~g--------------- 582 (792)
|.+++...-+ .+..+.+|++|+.. |++++|+|||||||||+||+|+++.-... .|
T Consensus 5 l~i~~ls~~y----~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 5 LHIGHLSKSF----QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp EEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEeEEEEE----CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 5566555444 34567889999998 99999999999999999999987652110 01
Q ss_pred --ccccCCceeeeccc--------------------------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEE
Q 043119 583 --SFVPADAATVGLTD--------------------------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLC 627 (792)
Q Consensus 583 --~~vpa~~~~~~~~~--------------------------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slv 627 (792)
.+||...+-++-.. ........+.++.++ ++++.+...+.+|+++
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lL 160 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELI 160 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 13333322111000 000111123444444 4555555568999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 628 LLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 628 llDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|||||++|+|+.....+...+.+...+. +.++|++||+.+.+.
T Consensus 161 LLDEPts~LD~~~r~~l~~~l~~~~~~~--g~tvi~vTHd~~ea~ 203 (359)
T 3fvq_A 161 LLDEPFSALDEQLRRQIREDMIAALRAN--GKSAVFVSHDREEAL 203 (359)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHT--TCEEEEECCCHHHHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHH
Confidence 9999999999999988865455554554 679999999998765
No 13
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.57 E-value=7.4e-15 Score=151.21 Aligned_cols=129 Identities=15% Similarity=0.116 Sum_probs=87.5
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH---------------------h-hcCccccCCceee----
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL---------------------S-HIGSFVPADAATV---- 592 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l---------------------a-q~g~~vpa~~~~~---- 592 (792)
..+.++++|+.+ |++++|+||||||||||||.++++.-. . ++| |||.....+
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~-~v~q~~~l~~~lt 97 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIA-LVPEGRRIFPELT 97 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEE-EECSSCCCCTTSB
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEE-EEecCCccCCCCc
Confidence 457789999987 999999999999999999999865311 0 122 455432111
Q ss_pred -------ec---cccc--------c------h----hhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHH
Q 043119 593 -------GL---TDSK--------H------M----TAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIG 643 (792)
Q Consensus 593 -------~~---~~~~--------~------~----~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~ 643 (792)
+. .+.+ . + ....++++.++ ++++.+...+.+|+++|+|||++|.|+.....
T Consensus 98 v~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~ 177 (240)
T 1ji0_A 98 VYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSE 177 (240)
T ss_dssp HHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHH
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHH
Confidence 00 0000 0 0 01123444444 45555556689999999999999999988888
Q ss_pred HHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 644 LLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 644 l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+. .+++.+.+. +.++|++||+++.+.
T Consensus 178 l~-~~l~~~~~~--g~tvi~vtHd~~~~~ 203 (240)
T 1ji0_A 178 VF-EVIQKINQE--GTTILLVEQNALGAL 203 (240)
T ss_dssp HH-HHHHHHHHT--TCCEEEEESCHHHHH
T ss_pred HH-HHHHHHHHC--CCEEEEEecCHHHHH
Confidence 85 566777654 578999999997654
No 14
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.56 E-value=7e-15 Score=153.95 Aligned_cols=144 Identities=15% Similarity=0.147 Sum_probs=95.4
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH-----------------------
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL----------------------- 578 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l----------------------- 578 (792)
.|.+++...-+ .....+.++++|+.. |++++|+||||||||||+|+++++.-.
T Consensus 7 ~l~i~~ls~~y---~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~ 83 (275)
T 3gfo_A 7 ILKVEELNYNY---SDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83 (275)
T ss_dssp EEEEEEEEEEC---TTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHH
T ss_pred EEEEEEEEEEE---CCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHh
Confidence 35555554333 112347889999988 999999999999999999999765311
Q ss_pred hhcCccccCCce----eeeccc-----------------------------ccchhhccchhHHHH-HHHHHHHHhCCCC
Q 043119 579 SHIGSFVPADAA----TVGLTD-----------------------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQ 624 (792)
Q Consensus 579 aq~g~~vpa~~~----~~~~~~-----------------------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~ 624 (792)
.++| |||.... ...+.+ .+......++++.++ ++++.+...+.+|
T Consensus 84 ~~ig-~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P 162 (275)
T 3gfo_A 84 ESIG-IVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP 162 (275)
T ss_dssp HSEE-EECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CcEE-EEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 1122 4554321 011111 000111234455444 4455555568999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hCCCCcEEEEEccChhhhhc
Q 043119 625 SLCLLDEFGKGTLTEDGIGLLGGTINYFV-TCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 625 slvllDE~~~gt~~~~~~~l~~~~~~~l~-~~~~~~~~l~~TH~~~l~~~ 673 (792)
+++|+|||++|.|+.....+. .++..+. +. +.++|++||+++.+..
T Consensus 163 ~lLlLDEPts~LD~~~~~~i~-~~l~~l~~~~--g~tvi~vtHdl~~~~~ 209 (275)
T 3gfo_A 163 KVLILDEPTAGLDPMGVSEIM-KLLVEMQKEL--GITIIIATHDIDIVPL 209 (275)
T ss_dssp SEEEEECTTTTCCHHHHHHHH-HHHHHHHHHH--CCEEEEEESCCSSGGG
T ss_pred CEEEEECccccCCHHHHHHHH-HHHHHHHhhC--CCEEEEEecCHHHHHH
Confidence 999999999999999888885 5777776 43 5799999999988753
No 15
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.55 E-value=1.2e-14 Score=151.53 Aligned_cols=141 Identities=13% Similarity=0.100 Sum_probs=93.4
Q ss_pred EEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH------------------------
Q 043119 524 LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL------------------------ 578 (792)
Q Consensus 524 l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l------------------------ 578 (792)
|.+++...-+ .+..+.++++|+.. |++++|+||||||||||||+++++.-.
T Consensus 7 l~i~~l~~~y----~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 7 LHVIDLHKRY----GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp EEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEeeEEEEE----CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 5555544333 23457789999988 999999999999999999999765311
Q ss_pred ----------hhcCccccCCceeee---cc-------------c-----------------ccc-hhhccchhHHHH-HH
Q 043119 579 ----------SHIGSFVPADAATVG---LT-------------D-----------------SKH-MTAEQSSFMIDL-HQ 613 (792)
Q Consensus 579 ----------aq~g~~vpa~~~~~~---~~-------------~-----------------~~~-~~~~~s~f~~e~-~~ 613 (792)
.++| |||.....++ +. + .+. .....++++.++ ++
T Consensus 83 ~~~~~~~~~~~~i~-~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qR 161 (262)
T 1b0u_A 83 ADKNQLRLLRTRLT-MVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQR 161 (262)
T ss_dssp SCHHHHHHHHHHEE-EECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHH
T ss_pred cChhhHHHHhcceE-EEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHH
Confidence 0122 3443321100 00 0 001 111223444444 44
Q ss_pred HHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 614 VGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 614 ~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
++.+...+.+|+++|+|||++|.|+.....+. .++..+.+. +.++|++||+++.+.
T Consensus 162 v~lAraL~~~p~lllLDEPts~LD~~~~~~~~-~~l~~l~~~--g~tvi~vtHd~~~~~ 217 (262)
T 1b0u_A 162 VSIARALAMEPDVLLFDEPTSALDPELVGEVL-RIMQQLAEE--GKTMVVVTHEMGFAR 217 (262)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTSCHHHHHHHH-HHHHHHHHT--TCCEEEECSCHHHHH
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHhC--CCEEEEEeCCHHHHH
Confidence 55555567999999999999999998888885 567777664 578999999998875
No 16
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.55 E-value=1e-14 Score=158.44 Aligned_cols=143 Identities=15% Similarity=0.127 Sum_probs=93.4
Q ss_pred EEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh-----cC-------------cc
Q 043119 524 LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH-----IG-------------SF 584 (792)
Q Consensus 524 l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq-----~g-------------~~ 584 (792)
|.+++...-+ .+..+.+|++|+.. |++++|+|||||||||+||+|+++.-... .| .+
T Consensus 4 l~~~~l~~~y----g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~ 79 (381)
T 3rlf_A 4 VQLQNVTKAW----GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGM 79 (381)
T ss_dssp EEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEE
T ss_pred EEEEeEEEEE----CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEE
Confidence 5555555444 34567889999998 99999999999999999999987752110 01 13
Q ss_pred ccCCceeeeccc--------------------------------ccchhhccchhHHHHH-HHHHHHHhCCCCeEEEEeC
Q 043119 585 VPADAATVGLTD--------------------------------SKHMTAEQSSFMIDLH-QVGMMLRQATSQSLCLLDE 631 (792)
Q Consensus 585 vpa~~~~~~~~~--------------------------------~~~~~~~~s~f~~e~~-~~~~~l~~~~~~slvllDE 631 (792)
|+.+.+-++-.. ........+.++.+++ +++.+...+.+|+++||||
T Consensus 80 VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDE 159 (381)
T 3rlf_A 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE 159 (381)
T ss_dssp ECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred EecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 333322111100 0001111234444443 4444444578999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 632 FGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 632 ~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|++|+|+.....+. ..++.+.+. .+.++|++||+++.+.
T Consensus 160 Pts~LD~~~~~~l~-~~l~~l~~~-~g~tii~vTHd~~ea~ 198 (381)
T 3rlf_A 160 PLSNLDAALRVQMR-IEISRLHKR-LGRTMIYVTHDQVEAM 198 (381)
T ss_dssp TTTTSCHHHHHHHH-HHHHHHHHH-HCCEEEEECSCHHHHH
T ss_pred CCcCCCHHHHHHHH-HHHHHHHHh-CCCEEEEEECCHHHHH
Confidence 99999999988885 466666543 1579999999998764
No 17
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.54 E-value=1.2e-14 Score=150.56 Aligned_cols=131 Identities=20% Similarity=0.154 Sum_probs=89.0
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------hhcCccccCCceee---ecc-----------
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------SHIGSFVPADAATV---GLT----------- 595 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------aq~g~~vpa~~~~~---~~~----------- 595 (792)
+..+.++++|+.. |++++|+||||||||||||.++++.-. .++ .|||...... .+.
T Consensus 17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i-~~v~q~~~~~~~~tv~enl~~~~~~~~ 95 (253)
T 2nq2_C 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSI-GFVPQFFSSPFAYSVLDIVLMGRSTHI 95 (253)
T ss_dssp TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCE-EEECSCCCCSSCCBHHHHHHGGGGGGS
T ss_pred CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccE-EEEcCCCccCCCCCHHHHHHHhhhhhc
Confidence 3457789999988 999999999999999999999876421 112 2455432110 000
Q ss_pred ------c----------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 043119 596 ------D----------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYF 652 (792)
Q Consensus 596 ------~----------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l 652 (792)
. .+......++++.++ ++++.+...+.+|+++|+|||++|.|+.....+. .++..+
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~-~~l~~l 174 (253)
T 2nq2_C 96 NTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVL-SLLIDL 174 (253)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHH-HHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence 0 000111233444444 4455555567999999999999999998888885 466666
Q ss_pred HhCCCCcEEEEEccChhhhh
Q 043119 653 VTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 653 ~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+. .+.++|++||+++.+.
T Consensus 175 ~~~-~g~tvi~vtHd~~~~~ 193 (253)
T 2nq2_C 175 AQS-QNMTVVFTTHQPNQVV 193 (253)
T ss_dssp HHT-SCCEEEEEESCHHHHH
T ss_pred HHh-cCCEEEEEecCHHHHH
Confidence 653 1579999999998874
No 18
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.54 E-value=1.4e-14 Score=150.66 Aligned_cols=141 Identities=16% Similarity=0.116 Sum_probs=92.8
Q ss_pred EEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH----------------------hh
Q 043119 524 LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL----------------------SH 580 (792)
Q Consensus 524 l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l----------------------aq 580 (792)
+.+++...-+ .+..+.++++|+.+ |++++|+||||||||||||+++++.-. .+
T Consensus 8 l~i~~l~~~y----~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 8 LRTENIVKYF----GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEE----TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEeeeEEEE----CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4555544333 23457789999988 999999999999999999999765311 11
Q ss_pred cCccccCCceeee---c-------------------------cc-----------------ccchhhccchhHHHH-HHH
Q 043119 581 IGSFVPADAATVG---L-------------------------TD-----------------SKHMTAEQSSFMIDL-HQV 614 (792)
Q Consensus 581 ~g~~vpa~~~~~~---~-------------------------~~-----------------~~~~~~~~s~f~~e~-~~~ 614 (792)
+| |||....-++ + .+ .+......++++.++ +++
T Consensus 84 i~-~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv 162 (257)
T 1g6h_A 84 IV-RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLV 162 (257)
T ss_dssp EE-ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH
T ss_pred EE-EEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHH
Confidence 22 4444321100 0 00 000111123444444 444
Q ss_pred HHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 615 GMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 615 ~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+.+...+.+|+++|+|||++|.|+.....+. .+++.+.+. +.++|++||+++.+.
T Consensus 163 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~-~~l~~l~~~--g~tvi~vtHd~~~~~ 217 (257)
T 1g6h_A 163 EIGRALMTNPKMIVMDEPIAGVAPGLAHDIF-NHVLELKAK--GITFLIIEHRLDIVL 217 (257)
T ss_dssp HHHHHHHTCCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHT--TCEEEEECSCCSTTG
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHC--CCEEEEEecCHHHHH
Confidence 5555557999999999999999998888885 567777664 679999999988764
No 19
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.54 E-value=9.2e-15 Score=147.31 Aligned_cols=140 Identities=13% Similarity=0.123 Sum_probs=93.4
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH----------------hhcCccc
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL----------------SHIGSFV 585 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l----------------aq~g~~v 585 (792)
.|.+++...-+ .+ .+.++++|+.. |++++|+||||||||||||+++++.-. .++ .||
T Consensus 10 ~l~~~~ls~~y----~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i-~~v 83 (214)
T 1sgw_A 10 KLEIRDLSVGY----DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKI-FFL 83 (214)
T ss_dssp EEEEEEEEEES----SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGE-EEE
T ss_pred eEEEEEEEEEe----CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcE-EEE
Confidence 35555544333 23 57889999987 999999999999999999999766411 112 245
Q ss_pred cCCceeee---cc------------c---------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCC
Q 043119 586 PADAATVG---LT------------D---------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGK 634 (792)
Q Consensus 586 pa~~~~~~---~~------------~---------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~ 634 (792)
|.....++ +. . ... ....++++.++ ++++.+...+.+|+++|||||++
T Consensus 84 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts 162 (214)
T 1sgw_A 84 PEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVV 162 (214)
T ss_dssp CSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTT
T ss_pred eCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 54322110 00 0 000 12233455544 45555556689999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 635 GTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 635 gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|.|+.....+. .+++.+.+. +.++|++||+++.+.
T Consensus 163 ~LD~~~~~~l~-~~l~~~~~~--g~tiiivtHd~~~~~ 197 (214)
T 1sgw_A 163 AIDEDSKHKVL-KSILEILKE--KGIVIISSREELSYC 197 (214)
T ss_dssp TSCTTTHHHHH-HHHHHHHHH--HSEEEEEESSCCTTS
T ss_pred CCCHHHHHHHH-HHHHHHHhC--CCEEEEEeCCHHHHH
Confidence 99998888885 466666643 568999999988754
No 20
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.53 E-value=2.3e-14 Score=148.38 Aligned_cols=130 Identities=18% Similarity=0.145 Sum_probs=85.4
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHH-H---------------------HhhcC-ccccCCceeee--
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIV-F---------------------LSHIG-SFVPADAATVG-- 593 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~-~---------------------laq~g-~~vpa~~~~~~-- 593 (792)
..+.++++|+.. |++++|+||||||||||+|.++++. + ..+.+ .+||.....++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 95 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGV 95 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSC
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCC
Confidence 457789999988 9999999999999999999999861 0 01111 24544322110
Q ss_pred -c---------------cc-----------------c-cchhhccch-hHHHHHH-HHHHHHhCCCCeEEEEeCCCCCCC
Q 043119 594 -L---------------TD-----------------S-KHMTAEQSS-FMIDLHQ-VGMMLRQATSQSLCLLDEFGKGTL 637 (792)
Q Consensus 594 -~---------------~~-----------------~-~~~~~~~s~-f~~e~~~-~~~~l~~~~~~slvllDE~~~gt~ 637 (792)
+ .. . +......++ ++.+++| ++.+...+.+|+++|+|||++|.|
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD 175 (250)
T 2d2e_A 96 TIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD 175 (250)
T ss_dssp BHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTC
T ss_pred CHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCC
Confidence 0 00 0 001111234 6655544 444445578999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 638 TEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 638 ~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+.....+. .+++.+.+. +.++|++||+++.+.
T Consensus 176 ~~~~~~l~-~~l~~l~~~--g~tvi~vtHd~~~~~ 207 (250)
T 2d2e_A 176 IDALKVVA-RGVNAMRGP--NFGALVITHYQRILN 207 (250)
T ss_dssp HHHHHHHH-HHHHHHCST--TCEEEEECSSSGGGG
T ss_pred HHHHHHHH-HHHHHHHhc--CCEEEEEecCHHHHH
Confidence 98888885 566776543 679999999998765
No 21
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.53 E-value=2.6e-14 Score=154.71 Aligned_cols=130 Identities=13% Similarity=0.070 Sum_probs=87.9
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh-------------------hcCccccCCceeeeccc---
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS-------------------HIGSFVPADAATVGLTD--- 596 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la-------------------q~g~~vpa~~~~~~~~~--- 596 (792)
..+.++++|+.+ |++++|+|||||||||+||+|+++.-.. ++| |||...+-++-..
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig-~v~Q~~~l~~~ltv~e 94 (359)
T 2yyz_A 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVG-MVFQNYALYPHMTVFE 94 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEE-EECSSCCCCTTSCHHH
T ss_pred EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEE-EEecCcccCCCCCHHH
Confidence 457789999988 9999999999999999999998764210 111 3443322111000
Q ss_pred -----------------------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHH
Q 043119 597 -----------------------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLG 646 (792)
Q Consensus 597 -----------------------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~ 646 (792)
........++++.++ ++++.+...+.+|+++|||||++|+|+.....+.
T Consensus 95 ni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~- 173 (359)
T 2yyz_A 95 NIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMR- 173 (359)
T ss_dssp HHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHH-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH-
Confidence 000111123444444 5555556668999999999999999999888885
Q ss_pred HHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 647 GTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 647 ~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+..+.+. .+.++|++||+.+.+.
T Consensus 174 ~~l~~l~~~-~g~tvi~vTHd~~~~~ 198 (359)
T 2yyz_A 174 AEIKHLQQE-LGITSVYVTHDQAEAM 198 (359)
T ss_dssp HHHHHHHHH-HCCEEEEEESCHHHHH
T ss_pred HHHHHHHHh-cCCEEEEEcCCHHHHH
Confidence 456666542 1579999999988764
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.52 E-value=3.7e-14 Score=148.19 Aligned_cols=129 Identities=16% Similarity=0.107 Sum_probs=88.9
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH------------------HhhcCccccCCc-ee--------
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF------------------LSHIGSFVPADA-AT-------- 591 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~------------------laq~g~~vpa~~-~~-------- 591 (792)
..+.++++|+.. |++++|+||||||||||||+++++.- ..++ .|||... ..
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i-~~v~q~~~~~~~~~tv~e 98 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNI-GIAFQYPEDQFFAERVFD 98 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGE-EEECSSGGGGCCCSSHHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhE-EEEeccchhhcCCCcHHH
Confidence 356789999988 99999999999999999999976531 1122 2555542 11
Q ss_pred ---eec---cc-----------------c--cchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHH
Q 043119 592 ---VGL---TD-----------------S--KHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLL 645 (792)
Q Consensus 592 ---~~~---~~-----------------~--~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~ 645 (792)
++. .+ . +......++++.++ ++++.+...+.+|+++|+|||++|.|+.....+.
T Consensus 99 nl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~ 178 (266)
T 2yz2_A 99 EVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLL 178 (266)
T ss_dssp HHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHH
Confidence 000 01 0 00111123445444 4555556668999999999999999998888885
Q ss_pred HHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 646 GGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 646 ~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.++..+.+. +.++|++||+++.+.
T Consensus 179 -~~l~~l~~~--g~tii~vtHd~~~~~ 202 (266)
T 2yz2_A 179 -RIVEKWKTL--GKTVILISHDIETVI 202 (266)
T ss_dssp -HHHHHHHHT--TCEEEEECSCCTTTG
T ss_pred -HHHHHHHHc--CCEEEEEeCCHHHHH
Confidence 567777654 579999999988765
No 23
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.51 E-value=3.2e-14 Score=154.14 Aligned_cols=130 Identities=16% Similarity=0.077 Sum_probs=87.9
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh-------------------hcCccccCCceeeeccc---
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS-------------------HIGSFVPADAATVGLTD--- 596 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la-------------------q~g~~vpa~~~~~~~~~--- 596 (792)
..+.++++|+.+ |++++|+|||||||||+||+|+++.-.. ++| +||...+-++-..
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig-~v~Q~~~l~~~ltv~e 94 (362)
T 2it1_A 16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVG-LVFQNWALYPHMTVYK 94 (362)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEE-EECTTCCCCTTSCHHH
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEE-EEecCcccCCCCCHHH
Confidence 456789999988 9999999999999999999998764211 111 3443322111000
Q ss_pred -----------------------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHH
Q 043119 597 -----------------------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLG 646 (792)
Q Consensus 597 -----------------------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~ 646 (792)
.+......++++.++ ++++.+...+.+|+++|||||++|+|+.....+.
T Consensus 95 ni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~- 173 (362)
T 2it1_A 95 NIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVR- 173 (362)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHH-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHH-
Confidence 000011123444444 4555555668999999999999999999888885
Q ss_pred HHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 647 GTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 647 ~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..++.+.+. .+.++|++||+.+.+.
T Consensus 174 ~~l~~l~~~-~g~tvi~vTHd~~~a~ 198 (362)
T 2it1_A 174 AELKRLQKE-LGITTVYVTHDQAEAL 198 (362)
T ss_dssp HHHHHHHHH-HTCEEEEEESCHHHHH
T ss_pred HHHHHHHHh-CCCEEEEECCCHHHHH
Confidence 466666542 1579999999998764
No 24
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.50 E-value=5e-14 Score=151.96 Aligned_cols=128 Identities=16% Similarity=0.137 Sum_probs=88.0
Q ss_pred eccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH-------------------hhcCccccCCceeeeccc-----
Q 043119 542 IPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL-------------------SHIGSFVPADAATVGLTD----- 596 (792)
Q Consensus 542 v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l-------------------aq~g~~vpa~~~~~~~~~----- 596 (792)
+.++++|+.. |++++|+|||||||||+||+|+++.-. .++| |||...+-++-..
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig-~v~Q~~~l~~~ltv~enl 93 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA-FVYQNYSLFPHMNVKKNL 93 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCE-EECTTCCCCTTSCHHHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEE-EEecCcccCCCCCHHHHH
Confidence 7889999988 999999999999999999999876421 0122 4544432211100
Q ss_pred ------------------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 043119 597 ------------------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINY 651 (792)
Q Consensus 597 ------------------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~ 651 (792)
........+.++.++ ++++.+...+.+|+++|||||++|+|+.....+. ..++.
T Consensus 94 ~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~-~~l~~ 172 (348)
T 3d31_A 94 EFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAR-EMLSV 172 (348)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHH-HHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHH-HHHHH
Confidence 000111123444444 4555555668999999999999999998888885 46666
Q ss_pred HHhCCCCcEEEEEccChhhhh
Q 043119 652 FVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 652 l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+.+. .+.++|++||+.+.+.
T Consensus 173 l~~~-~g~tii~vTHd~~~~~ 192 (348)
T 3d31_A 173 LHKK-NKLTVLHITHDQTEAR 192 (348)
T ss_dssp HHHH-TTCEEEEEESCHHHHH
T ss_pred HHHh-cCCEEEEEeCCHHHHH
Confidence 6543 2579999999988754
No 25
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.50 E-value=3.4e-14 Score=153.44 Aligned_cols=130 Identities=15% Similarity=0.053 Sum_probs=87.4
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh-------------------hcCccccCCceeeeccc---
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS-------------------HIGSFVPADAATVGLTD--- 596 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la-------------------q~g~~vpa~~~~~~~~~--- 596 (792)
..+.++++|+.+ |++++|+|||||||||+||+|+++.-.. ++| |||...+-++-..
T Consensus 28 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig-~v~Q~~~l~~~ltv~e 106 (355)
T 1z47_A 28 ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVG-LVFQNYALFQHMTVYD 106 (355)
T ss_dssp TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEE-EECGGGCCCTTSCHHH
T ss_pred CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEE-EEecCcccCCCCCHHH
Confidence 346789999987 9999999999999999999998764211 111 3333322111000
Q ss_pred -----------------------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHH
Q 043119 597 -----------------------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLG 646 (792)
Q Consensus 597 -----------------------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~ 646 (792)
........++++.++ ++++.+...+.+|+++|||||++|+|+.....+.
T Consensus 107 ni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~- 185 (355)
T 1z47_A 107 NVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELR- 185 (355)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHH-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH-
Confidence 000011123444444 4555555668999999999999999999888885
Q ss_pred HHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 647 GTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 647 ~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..++.+.+. .+.++|++||+.+.+.
T Consensus 186 ~~l~~l~~~-~g~tvi~vTHd~~~a~ 210 (355)
T 1z47_A 186 TFVRQVHDE-MGVTSVFVTHDQEEAL 210 (355)
T ss_dssp HHHHHHHHH-HTCEEEEECSCHHHHH
T ss_pred HHHHHHHHh-cCCEEEEECCCHHHHH
Confidence 456666542 1579999999998764
No 26
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.50 E-value=4.2e-14 Score=154.08 Aligned_cols=131 Identities=12% Similarity=0.071 Sum_probs=86.9
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhh-----cC-------------------ccccCCceeeec
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSH-----IG-------------------SFVPADAATVGL 594 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq-----~g-------------------~~vpa~~~~~~~ 594 (792)
..+.++++|+.. |++++|+||||||||||||+|+++.-... .| .|||...+-++-
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ 95 (372)
T 1g29_1 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPH 95 (372)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTT
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCC
Confidence 457789999987 99999999999999999999987742110 01 123332211110
Q ss_pred cc--------------------------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHH
Q 043119 595 TD--------------------------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDG 641 (792)
Q Consensus 595 ~~--------------------------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~ 641 (792)
.. ........++++.++ ++++.+...+.+|+++|||||++|+|+...
T Consensus 96 ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r 175 (372)
T 1g29_1 96 MTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR 175 (372)
T ss_dssp SCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHH
Confidence 00 000011123444444 455555556899999999999999999988
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 642 IGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 642 ~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+. ..++.+.+. .+.++|++||+.+.+.
T Consensus 176 ~~l~-~~l~~l~~~-~g~tvi~vTHd~~~a~ 204 (372)
T 1g29_1 176 VRMR-AELKKLQRQ-LGVTTIYVTHDQVEAM 204 (372)
T ss_dssp HHHH-HHHHHHHHH-HTCEEEEEESCHHHHH
T ss_pred HHHH-HHHHHHHHh-cCCEEEEECCCHHHHH
Confidence 8885 456666542 1579999999998764
No 27
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.49 E-value=6.1e-14 Score=152.55 Aligned_cols=142 Identities=13% Similarity=0.084 Sum_probs=91.6
Q ss_pred EEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh-------------------hcCc
Q 043119 524 LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS-------------------HIGS 583 (792)
Q Consensus 524 l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la-------------------q~g~ 583 (792)
|.+++...-+ .+..+.++++|+.. |++++|+||||||||||||+|+++.-.. ++|
T Consensus 12 l~~~~l~~~y----~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig- 86 (372)
T 1v43_A 12 VKLENLTKRF----GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS- 86 (372)
T ss_dssp EEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEE-
T ss_pred EEEEEEEEEE----CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEE-
Confidence 5565554443 23457889999988 9999999999999999999998764211 111
Q ss_pred cccCCceeeeccc--------------------------------ccchhhccchhHH-HHHHHHHHHHhCCCCeEEEEe
Q 043119 584 FVPADAATVGLTD--------------------------------SKHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLD 630 (792)
Q Consensus 584 ~vpa~~~~~~~~~--------------------------------~~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllD 630 (792)
|||...+-++-.. .....+..++++. |.++++.+...+.+|+++|||
T Consensus 87 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD 166 (372)
T 1v43_A 87 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMD 166 (372)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEE
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 3333322111000 0000011122332 345555555668999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 631 EFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 631 E~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
||++|+|+.....+. ..++.+.+. .+.++|++||+.+.+.
T Consensus 167 EP~s~LD~~~r~~l~-~~l~~l~~~-~g~tvi~vTHd~~~a~ 206 (372)
T 1v43_A 167 EPLSNLDAKLRVAMR-AEIKKLQQK-LKVTTIYVTHDQVEAM 206 (372)
T ss_dssp STTTTSCHHHHHHHH-HHHHHHHHH-HTCEEEEEESCHHHHH
T ss_pred CCCccCCHHHHHHHH-HHHHHHHHh-CCCEEEEEeCCHHHHH
Confidence 999999999888885 456666542 1579999999988764
No 28
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.49 E-value=2.3e-14 Score=148.03 Aligned_cols=128 Identities=14% Similarity=0.082 Sum_probs=85.6
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH-h-------------------hcCccccCCceee---eccc
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL-S-------------------HIGSFVPADAATV---GLTD 596 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l-a-------------------q~g~~vpa~~~~~---~~~~ 596 (792)
.+.++++|+.. |++++|+||||||||||||+++++.-. + ++ .|||.....+ .+.+
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i-~~v~q~~~~~~~~tv~e 92 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHR-AYLSQQQTPPFATPVWH 92 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHE-EEECSCCCCCTTCBHHH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceE-EEECCCCccCCCCcHHH
Confidence 36778999987 999999999999999999999876421 1 11 2344332111 0000
Q ss_pred ------------------------ccchhhccchhHHHH-HHHHHHHHhCCCCe-------EEEEeCCCCCCCHHHHHHH
Q 043119 597 ------------------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQS-------LCLLDEFGKGTLTEDGIGL 644 (792)
Q Consensus 597 ------------------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~s-------lvllDE~~~gt~~~~~~~l 644 (792)
.+......++++.++ ++++.+...+.+|+ ++|||||++|.|+.....+
T Consensus 93 ~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l 172 (249)
T 2qi9_C 93 YLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSAL 172 (249)
T ss_dssp HHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHH
T ss_pred HHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHH
Confidence 000111123444444 44444444567788 9999999999999888888
Q ss_pred HHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 645 LGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 645 ~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
. .+++.+.+. +.++|++||+++.+.
T Consensus 173 ~-~~l~~l~~~--g~tviivtHd~~~~~ 197 (249)
T 2qi9_C 173 D-KILSALSQQ--GLAIVMSSHDLNHTL 197 (249)
T ss_dssp H-HHHHHHHHT--TCEEEEECSCHHHHH
T ss_pred H-HHHHHHHhC--CCEEEEEeCCHHHHH
Confidence 5 566777654 579999999998874
No 29
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.49 E-value=8.9e-14 Score=145.58 Aligned_cols=146 Identities=14% Similarity=0.153 Sum_probs=95.0
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH---------------------hh
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL---------------------SH 580 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l---------------------aq 580 (792)
.|.+++...-+-. .....+.++++|+.. |++++|+||||||||||||.++++.-. .+
T Consensus 16 ~l~~~~l~~~y~~-~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 16 LVKFQDVSFAYPN-HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CEEEEEEEECCTT-CTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred eEEEEEEEEEeCC-CCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 4677666543300 001467889999988 999999999999999999999765311 12
Q ss_pred cCccccCCceeee--ccc----------c-cc------------------------hhhccchhHHHH-HHHHHHHHhCC
Q 043119 581 IGSFVPADAATVG--LTD----------S-KH------------------------MTAEQSSFMIDL-HQVGMMLRQAT 622 (792)
Q Consensus 581 ~g~~vpa~~~~~~--~~~----------~-~~------------------------~~~~~s~f~~e~-~~~~~~l~~~~ 622 (792)
+| |||.....++ +.+ . +. .....++++.++ ++++.+...+.
T Consensus 95 i~-~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 95 VA-AVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp EE-EECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred EE-EEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 22 4554321110 000 0 00 011123444444 55555666689
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 623 SQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 623 ~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+|+++|||||++|+|+.....+. .++..+.+. .+.++|++||+++.+.
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~-~~l~~~~~~-~g~tviivtHd~~~~~ 221 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQ-RLLYESPEW-ASRTVLLITQQLSLAE 221 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHH-HHHHHCTTT-TTSEEEEECSCHHHHT
T ss_pred CCCEEEEECCccCCCHHHHHHHH-HHHHHHHhh-cCCEEEEEeCCHHHHH
Confidence 99999999999999998888874 466665432 2679999999998764
No 30
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.49 E-value=5.8e-14 Score=145.03 Aligned_cols=128 Identities=15% Similarity=0.213 Sum_probs=87.0
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH---------------------hhcCccccCCceeee--cc
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL---------------------SHIGSFVPADAATVG--LT 595 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l---------------------aq~g~~vpa~~~~~~--~~ 595 (792)
..+.++++|+.. |++++|+||||||||||||+++++.-. .++| |||.....+. +.
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~-~v~Q~~~l~~~tv~ 100 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG-VVLQDNVLLNRSII 100 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE-EECSSCCCTTSBHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE-EEeCCCccccccHH
Confidence 457889999988 999999999999999999999765311 1222 4554321110 00
Q ss_pred c---------c-c-------------chh-----------hccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHH
Q 043119 596 D---------S-K-------------HMT-----------AEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTED 640 (792)
Q Consensus 596 ~---------~-~-------------~~~-----------~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~ 640 (792)
+ . + ... ...+.++.++ ++++.+...+.+|+++|||||++|.|+..
T Consensus 101 enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~ 180 (247)
T 2ff7_A 101 DNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES 180 (247)
T ss_dssp HHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHH
T ss_pred HHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 0 0 0 000 0113455544 44555555689999999999999999988
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 641 GIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 641 ~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
...+. .++..+. . +.++|++||+++.+.
T Consensus 181 ~~~i~-~~l~~~~-~--g~tviivtH~~~~~~ 208 (247)
T 2ff7_A 181 EHVIM-RNMHKIC-K--GRTVIIIAHRLSTVK 208 (247)
T ss_dssp HHHHH-HHHHHHH-T--TSEEEEECSSGGGGT
T ss_pred HHHHH-HHHHHHc-C--CCEEEEEeCCHHHHH
Confidence 88885 4666664 3 579999999998764
No 31
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.49 E-value=3.1e-14 Score=154.16 Aligned_cols=129 Identities=16% Similarity=0.072 Sum_probs=86.3
Q ss_pred eccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--h---cC------------------ccccCCceeeeccc-
Q 043119 542 IPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--H---IG------------------SFVPADAATVGLTD- 596 (792)
Q Consensus 542 v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--q---~g------------------~~vpa~~~~~~~~~- 596 (792)
+.+|++|+.. |++++|+||||||||||||+|+++.-.. + .| .|||...+-++-..
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv 99 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTA 99 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCH
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCH
Confidence 6789999988 9999999999999999999998764211 0 01 12333221111000
Q ss_pred -------------------------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHH
Q 043119 597 -------------------------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGL 644 (792)
Q Consensus 597 -------------------------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l 644 (792)
.+......++++.++ ++++.+...+.+|+++|||||++|+|+.....+
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l 179 (353)
T 1oxx_K 100 FENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSA 179 (353)
T ss_dssp HHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence 000011123444444 455555666899999999999999999998888
Q ss_pred HHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 645 LGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 645 ~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
. ..++.+.+. .+.++|++||+.+.+.
T Consensus 180 ~-~~l~~l~~~-~g~tvi~vTHd~~~~~ 205 (353)
T 1oxx_K 180 R-ALVKEVQSR-LGVTLLVVSHDPADIF 205 (353)
T ss_dssp H-HHHHHHHHH-HCCEEEEEESCHHHHH
T ss_pred H-HHHHHHHHh-cCCEEEEEeCCHHHHH
Confidence 5 456666542 1579999999998764
No 32
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.48 E-value=5.2e-14 Score=144.56 Aligned_cols=127 Identities=19% Similarity=0.158 Sum_probs=83.9
Q ss_pred ccceeecCCCcEEEEEcCCCCCchhHHHHHHHHHHHh-------------------hcCccccCCceeeec---cc----
Q 043119 543 PNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLS-------------------HIGSFVPADAATVGL---TD---- 596 (792)
Q Consensus 543 ~n~~~~~~~~~~~~ltGpN~~GKSt~lk~i~~~~~la-------------------q~g~~vpa~~~~~~~---~~---- 596 (792)
.++++|+.+.++++|+||||||||||||+++++.-.. ++ .|||....-++. .+
T Consensus 15 l~~isl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i-~~v~q~~~l~~~ltv~enl~~ 93 (240)
T 2onk_A 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGI-GFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEEECSSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCC-BCCCSSCCCCTTSCHHHHHHT
T ss_pred EeeeEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcE-EEEcCCCccCCCCcHHHHHHH
Confidence 6788887654899999999999999999998764210 11 244443211110 00
Q ss_pred -----------------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 043119 597 -----------------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYF 652 (792)
Q Consensus 597 -----------------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l 652 (792)
.+......++++.++ ++++.+...+.+|+++|+|||++|.|+.....+. .++..+
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~-~~l~~l 172 (240)
T 2onk_A 94 GLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLM-EELRFV 172 (240)
T ss_dssp TCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHH-HHHHHH
T ss_pred HHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHH
Confidence 000011123444444 4455555668999999999999999998888885 566666
Q ss_pred HhCCCCcEEEEEccChhhhh
Q 043119 653 VTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 653 ~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+.. +.++|++||+.+.+.
T Consensus 173 ~~~~-g~tvi~vtHd~~~~~ 191 (240)
T 2onk_A 173 QREF-DVPILHVTHDLIEAA 191 (240)
T ss_dssp HHHH-TCCEEEEESCHHHHH
T ss_pred HHhc-CCEEEEEeCCHHHHH
Confidence 5421 568999999998764
No 33
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.48 E-value=1.6e-14 Score=147.52 Aligned_cols=129 Identities=12% Similarity=0.100 Sum_probs=84.4
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------hhcCccccCCceeee--cc---------c---
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------SHIGSFVPADAATVG--LT---------D--- 596 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------aq~g~~vpa~~~~~~--~~---------~--- 596 (792)
..+.++++|+.. |++++|+||||||||||||.++++.-. +++| |||.....++ +. +
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~-~v~q~~~~~~~tv~enl~~~~~~~~~~ 99 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRIS-FCSQFSWIMPGTIKENIIFGVSYDEYR 99 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEE-EECSSCCCCSBCHHHHHHTTSCCCHHH
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEE-EEecCCcccCCCHHHHhhccCCcChHH
Confidence 457889999988 999999999999999999999866421 1122 4554321110 00 0
Q ss_pred ----------ccch-----------hhccchhHHHHH-HHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 043119 597 ----------SKHM-----------TAEQSSFMIDLH-QVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVT 654 (792)
Q Consensus 597 ----------~~~~-----------~~~~s~f~~e~~-~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~ 654 (792)
.+.+ ....++++.+++ +++.+...+.+|+++|+|||++|.|+.....+...+++.+.+
T Consensus 100 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~ 179 (229)
T 2pze_A 100 YRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 179 (229)
T ss_dssp HHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTT
T ss_pred HHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhC
Confidence 0000 001145555554 444455557999999999999999998877764322332222
Q ss_pred CCCCcEEEEEccChhhhh
Q 043119 655 CDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 655 ~~~~~~~l~~TH~~~l~~ 672 (792)
+.++|++||+.+.+.
T Consensus 180 ---~~tvi~vtH~~~~~~ 194 (229)
T 2pze_A 180 ---NKTRILVTSKMEHLK 194 (229)
T ss_dssp ---TSEEEEECCCHHHHH
T ss_pred ---CCEEEEEcCChHHHH
Confidence 579999999998764
No 34
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.48 E-value=1.2e-13 Score=144.31 Aligned_cols=143 Identities=21% Similarity=0.260 Sum_probs=93.0
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHH-HH---------------------h
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIV-FL---------------------S 579 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~-~l---------------------a 579 (792)
.+.+++...-+ .+..+.++++|+.. |++++|+||||||||||||.++++. +- .
T Consensus 20 ~l~~~~l~~~y----~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 95 (267)
T 2zu0_C 20 MLSIKDLHVSV----EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRA 95 (267)
T ss_dssp CEEEEEEEEEE----TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHH
T ss_pred eEEEEeEEEEE----CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHh
Confidence 35666554333 23567889999988 9999999999999999999998862 00 0
Q ss_pred hcC-ccccCCceee--------------------ec--cc-----------------c-cchhhccc-hhHHHHHH-HHH
Q 043119 580 HIG-SFVPADAATV--------------------GL--TD-----------------S-KHMTAEQS-SFMIDLHQ-VGM 616 (792)
Q Consensus 580 q~g-~~vpa~~~~~--------------------~~--~~-----------------~-~~~~~~~s-~f~~e~~~-~~~ 616 (792)
+.+ .|||.....+ +. .+ . .......+ +++.+++| ++.
T Consensus 96 ~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~i 175 (267)
T 2zu0_C 96 GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDI 175 (267)
T ss_dssp HHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHH
T ss_pred hCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHH
Confidence 111 2444432100 00 00 0 00011112 36555544 444
Q ss_pred HHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 617 MLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 617 ~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+...+.+|+++|||||++|.|+.....+. .+++.+.+. +.++|++||+++.+.
T Consensus 176 AraL~~~p~lLlLDEPts~LD~~~~~~l~-~~l~~l~~~--g~tviivtHd~~~~~ 228 (267)
T 2zu0_C 176 LQMAVLEPELCILDESDSGLDIDALKVVA-DGVNSLRDG--KRSFIIVTHYQRILD 228 (267)
T ss_dssp HHHHHHCCSEEEEESTTTTCCHHHHHHHH-HHHHTTCCS--SCEEEEECSSGGGGG
T ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhc--CCEEEEEeeCHHHHH
Confidence 55557899999999999999998888874 466666443 679999999998764
No 35
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.48 E-value=4.3e-14 Score=148.45 Aligned_cols=142 Identities=18% Similarity=0.182 Sum_probs=92.3
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH-----------------------
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL----------------------- 578 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l----------------------- 578 (792)
.+.+++...-+ .+..+.++++|+.. |++++|+||||||||||||+++++.-.
T Consensus 21 ~l~~~~l~~~y----~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 21 LIQLDQIGRMK----QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp EEEEEEEEEEE----TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred eEEEEeEEEEE----CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 36666654433 23467889999988 999999999999999999999765411
Q ss_pred hhcCccccCCcee-e----ecc-----------------c----------------ccchhhccchhHHHH-HHHHHHHH
Q 043119 579 SHIGSFVPADAAT-V----GLT-----------------D----------------SKHMTAEQSSFMIDL-HQVGMMLR 619 (792)
Q Consensus 579 aq~g~~vpa~~~~-~----~~~-----------------~----------------~~~~~~~~s~f~~e~-~~~~~~l~ 619 (792)
.++| |||..... . .+. . .+......++++.++ ++++.+..
T Consensus 97 ~~i~-~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAra 175 (279)
T 2ihy_A 97 QHIG-FVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARA 175 (279)
T ss_dssp TTEE-EECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred CcEE-EEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 0121 33322100 0 000 0 000111123444444 44555555
Q ss_pred hCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEE--EEEccChhhhh
Q 043119 620 QATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKV--LVCTHLTELLN 672 (792)
Q Consensus 620 ~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~--l~~TH~~~l~~ 672 (792)
.+.+|+++|||||++|.|+.....+. .++..+.+. +.++ |++||+++.+.
T Consensus 176 L~~~p~lLlLDEPts~LD~~~~~~l~-~~l~~l~~~--g~tv~~iivtHd~~~~~ 227 (279)
T 2ihy_A 176 LMGQPQVLILDEPAAGLDFIARESLL-SILDSLSDS--YPTLAMIYVTHFIEEIT 227 (279)
T ss_dssp HHTCCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHH--CTTCEEEEEESCGGGCC
T ss_pred HhCCCCEEEEeCCccccCHHHHHHHH-HHHHHHHHC--CCEEEEEEEecCHHHHH
Confidence 57999999999999999998888885 566666654 4578 99999998764
No 36
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.47 E-value=7.3e-14 Score=145.33 Aligned_cols=126 Identities=18% Similarity=0.206 Sum_probs=83.2
Q ss_pred ceeccceeecCCCcEEEEEcCCCCCchhHHHHHHHHHHHh------------------hcCccccCCcee-eecc-----
Q 043119 540 TFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLS------------------HIGSFVPADAAT-VGLT----- 595 (792)
Q Consensus 540 ~~v~n~~~~~~~~~~~~ltGpN~~GKSt~lk~i~~~~~la------------------q~g~~vpa~~~~-~~~~----- 595 (792)
..+.++++|+..|++++|+||||||||||||+++++. .. ++|.|||..... .++.
T Consensus 18 ~~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~ 96 (263)
T 2pjz_A 18 RFSLENINLEVNGEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYL 96 (263)
T ss_dssp EEEEEEEEEEECSSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHH
T ss_pred ceeEEeeeEEECCEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHH
Confidence 3466788887668899999999999999999998775 31 122155543211 0000
Q ss_pred -----c---------------c-cchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 043119 596 -----D---------------S-KHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFV 653 (792)
Q Consensus 596 -----~---------------~-~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~ 653 (792)
+ . +......++++.++ ++++.+...+.+|+++|||||++|.|+.....+. .++..+.
T Consensus 97 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~-~~L~~~~ 175 (263)
T 2pjz_A 97 YEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVIS-RYIKEYG 175 (263)
T ss_dssp HHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHH-HHHHHSC
T ss_pred hhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHH-HHHHHhc
Confidence 0 1 11112234455444 4455555567999999999999999998877764 3444332
Q ss_pred hCCCCcEEEEEccChhhhh
Q 043119 654 TCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 654 ~~~~~~~~l~~TH~~~l~~ 672 (792)
. ++|++||+++.+.
T Consensus 176 ----~-tviivtHd~~~~~ 189 (263)
T 2pjz_A 176 ----K-EGILVTHELDMLN 189 (263)
T ss_dssp ----S-EEEEEESCGGGGG
T ss_pred ----C-cEEEEEcCHHHHH
Confidence 2 8999999988764
No 37
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.45 E-value=3.4e-14 Score=145.91 Aligned_cols=131 Identities=13% Similarity=0.092 Sum_probs=84.3
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------hhcCccccCCcee--eeccc---------cc-
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------SHIGSFVPADAAT--VGLTD---------SK- 598 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------aq~g~~vpa~~~~--~~~~~---------~~- 598 (792)
..+.++++|+.. |++++|+||||||||||||.++++.-. +++| |||..... ..+.+ .+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~-~v~Q~~~~~~~tv~enl~~~~~~~~~~ 96 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVA-YVPQQAWIQNDSLRENILFGCQLEEPY 96 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEE-EECSSCCCCSEEHHHHHHTTSCCCTTH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEE-EEcCCCcCCCcCHHHHhhCccccCHHH
Confidence 457789999988 999999999999999999999766421 1122 45543210 00000 00
Q ss_pred ------------c-----------hhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 043119 599 ------------H-----------MTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVT 654 (792)
Q Consensus 599 ------------~-----------~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~ 654 (792)
. .....+.++.++ ++++.+...+.+|+++|||||++|.|+.....+.. .+..+.+
T Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~-~l~~~~~ 175 (237)
T 2cbz_A 97 YRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE-NVIGPKG 175 (237)
T ss_dssp HHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHH-HTTSTTS
T ss_pred HHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH-HHHHHHh
Confidence 0 011124555555 44555555578999999999999999988777743 3311011
Q ss_pred CCCCcEEEEEccChhhhh
Q 043119 655 CDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 655 ~~~~~~~l~~TH~~~l~~ 672 (792)
...+.++|++||+.+.+.
T Consensus 176 ~~~~~tviivtH~~~~~~ 193 (237)
T 2cbz_A 176 MLKNKTRILVTHSMSYLP 193 (237)
T ss_dssp TTTTSEEEEECSCSTTGG
T ss_pred hcCCCEEEEEecChHHHH
Confidence 112679999999988754
No 38
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.43 E-value=8e-14 Score=143.77 Aligned_cols=128 Identities=18% Similarity=0.186 Sum_probs=86.2
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH---------------------hhcCccccCCcee------
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL---------------------SHIGSFVPADAAT------ 591 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l---------------------aq~g~~vpa~~~~------ 591 (792)
..+.++++|+.. |++++|+||||||||||||.++++.-. .++ .|||.....
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i-~~v~q~~~l~~~tv~ 93 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQI-GFVSQDSAIMAGTIR 93 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTC-CEECCSSCCCCEEHH
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhE-EEEcCCCccccccHH
Confidence 456789999988 999999999999999999999876411 012 244443211
Q ss_pred ----eec---cc-c------------cch-----------hhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHH
Q 043119 592 ----VGL---TD-S------------KHM-----------TAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTE 639 (792)
Q Consensus 592 ----~~~---~~-~------------~~~-----------~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~ 639 (792)
++. .+ . +.. ....++++.++ ++++.+...+.+|+++|+|||++|.|+.
T Consensus 94 enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~ 173 (243)
T 1mv5_A 94 ENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSE 173 (243)
T ss_dssp HHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSS
T ss_pred HHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence 010 00 0 000 00113455444 4455555557899999999999999998
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 640 DGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 640 ~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
....+. .++..+. . +.++|++||+++.+.
T Consensus 174 ~~~~i~-~~l~~~~-~--~~tvi~vtH~~~~~~ 202 (243)
T 1mv5_A 174 SESMVQ-KALDSLM-K--GRTTLVIAHRLSTIV 202 (243)
T ss_dssp SCCHHH-HHHHHHH-T--TSEEEEECCSHHHHH
T ss_pred HHHHHH-HHHHHhc-C--CCEEEEEeCChHHHH
Confidence 888885 4666665 3 579999999998764
No 39
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.43 E-value=4.9e-14 Score=148.64 Aligned_cols=128 Identities=12% Similarity=0.102 Sum_probs=83.0
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------hhcCccccCCceeee---------c-cc-----
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------SHIGSFVPADAATVG---------L-TD----- 596 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------aq~g~~vpa~~~~~~---------~-~~----- 596 (792)
.+.++++|+.. |++++|+||||||||||||+++++.-. +++| |||.....++ . .+
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~-~v~Q~~~l~~~tv~enl~~~~~~~~~~~ 130 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRIS-FCSQNSWIMPGTIKENIIGVSYDEYRYR 130 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEE-EECSSCCCCSSBHHHHHHTTCCCHHHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEE-EEeCCCccCcccHHHHhhCcccchHHHH
Confidence 46779999988 999999999999999999999776421 1222 4554322110 0 00
Q ss_pred --------ccch-----------hhccchhHHHHH-HHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 043119 597 --------SKHM-----------TAEQSSFMIDLH-QVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCD 656 (792)
Q Consensus 597 --------~~~~-----------~~~~s~f~~e~~-~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~ 656 (792)
.+.+ ....+.++.+++ +++.+...+.+|+++|||||++|.|+.....+...+++.+.
T Consensus 131 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--- 207 (290)
T 2bbs_A 131 SVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--- 207 (290)
T ss_dssp HHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT---
T ss_pred HHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh---
Confidence 0000 000135555554 44445555799999999999999999887776432222222
Q ss_pred CCcEEEEEccChhhhh
Q 043119 657 VPPKVLVCTHLTELLN 672 (792)
Q Consensus 657 ~~~~~l~~TH~~~l~~ 672 (792)
.+.++|++||+++.+.
T Consensus 208 ~~~tviivtHd~~~~~ 223 (290)
T 2bbs_A 208 ANKTRILVTSKMEHLK 223 (290)
T ss_dssp TTSEEEEECCCHHHHH
T ss_pred CCCEEEEEecCHHHHH
Confidence 2579999999998764
No 40
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.42 E-value=2.2e-13 Score=141.72 Aligned_cols=144 Identities=10% Similarity=0.094 Sum_probs=92.1
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhc
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL--------------------SHI 581 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l--------------------aq~ 581 (792)
.+.+++...-+-. .....+.++++|+.. |++++|+||||||||||||+++++.-. .++
T Consensus 17 ~l~i~~l~~~y~~-~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i 95 (260)
T 2ghi_A 17 NIEFSDVNFSYPK-QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSII 95 (260)
T ss_dssp CEEEEEEEECCTT-CCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTE
T ss_pred eEEEEEEEEEeCC-CCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccE
Confidence 4666665543310 001357889999998 999999999999999999999875311 112
Q ss_pred CccccCCceee--eccc---------c--c--------c-------h--------hhccchhHHHH-HHHHHHHHhCCCC
Q 043119 582 GSFVPADAATV--GLTD---------S--K--------H-------M--------TAEQSSFMIDL-HQVGMMLRQATSQ 624 (792)
Q Consensus 582 g~~vpa~~~~~--~~~~---------~--~--------~-------~--------~~~~s~f~~e~-~~~~~~l~~~~~~ 624 (792)
.|||....-+ .+.+ . + . + ....+.++.++ ++++.+...+.+|
T Consensus 96 -~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 96 -GIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp -EEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred -EEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 2444432111 0000 0 0 0 0 00113455444 4455555557899
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 625 SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 625 slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+++|+|||++|.|+.....+. .++..+.+ +.++|++||+++.+.
T Consensus 175 ~lllLDEPts~LD~~~~~~i~-~~l~~l~~---~~tviivtH~~~~~~ 218 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQ-KAVEDLRK---NRTLIIIAHRLSTIS 218 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHH-HHHHHHTT---TSEEEEECSSGGGST
T ss_pred CEEEEECccccCCHHHHHHHH-HHHHHhcC---CCEEEEEcCCHHHHH
Confidence 999999999999998887774 56666643 569999999988753
No 41
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.39 E-value=5.6e-13 Score=141.33 Aligned_cols=143 Identities=17% Similarity=0.189 Sum_probs=94.4
Q ss_pred CcEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH---------------------Hh
Q 043119 522 PLLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF---------------------LS 579 (792)
Q Consensus 522 ~~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~---------------------la 579 (792)
..|.+++...-+ .....+.++++|+.. |++++|+|||||||||++|.++++.- ..
T Consensus 52 ~~i~~~~vs~~y---~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~ 128 (306)
T 3nh6_A 52 GRIEFENVHFSY---ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRS 128 (306)
T ss_dssp CCEEEEEEEEES---STTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHH
T ss_pred CeEEEEEEEEEc---CCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhc
Confidence 347776654433 123568889999998 99999999999999999999876531 11
Q ss_pred hcCccccCCceee--eccc-----------c------------cch-----------hhccchhHHHH-HHHHHHHHhCC
Q 043119 580 HIGSFVPADAATV--GLTD-----------S------------KHM-----------TAEQSSFMIDL-HQVGMMLRQAT 622 (792)
Q Consensus 580 q~g~~vpa~~~~~--~~~~-----------~------------~~~-----------~~~~s~f~~e~-~~~~~~l~~~~ 622 (792)
++| |||.+..-+ .+.+ . +.+ ...-+.++.++ ++++.+...+.
T Consensus 129 ~i~-~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~ 207 (306)
T 3nh6_A 129 HIG-VVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK 207 (306)
T ss_dssp TEE-EECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred ceE-EEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh
Confidence 232 455543211 0000 0 000 00113444444 44555555578
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 623 SQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 623 ~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+|+++|||||++|+|+.....+.. .+..+.+ +.++|++||+++.+.
T Consensus 208 ~p~iLlLDEPts~LD~~~~~~i~~-~l~~l~~---~~Tvi~itH~l~~~~ 253 (306)
T 3nh6_A 208 APGIILLDEATSALDTSNERAIQA-SLAKVCA---NRTTIVVAHRLSTVV 253 (306)
T ss_dssp CCSEEEEECCSSCCCHHHHHHHHH-HHHHHHT---TSEEEEECCSHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHH-HHHHHcC---CCEEEEEEcChHHHH
Confidence 999999999999999988888854 5556654 469999999999875
No 42
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.35 E-value=2.6e-13 Score=132.16 Aligned_cols=118 Identities=14% Similarity=0.055 Sum_probs=71.0
Q ss_pred ceeecCC-CcEEEEEcCCCCCchhHHHHHH----------HHHHHhhcCccccCCceeeecc----c------cc-----
Q 043119 545 DTRIDND-GRINIITGPNYSGKSIYIKQVA----------LIVFLSHIGSFVPADAATVGLT----D------SK----- 598 (792)
Q Consensus 545 ~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~----------~~~~laq~g~~vpa~~~~~~~~----~------~~----- 598 (792)
+++|+.+ |++++|+||||||||||+|++. +..++.| ......+. + ..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~g 73 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSD-------DENDQTVTGAAFDVLHYIVSKRLQLG 73 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCS-------STTCGGGHHHHHHHHHHHHHHHHHTT
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcC-------cccchhhHHHHHHHHHHHHHHHHhCC
Confidence 4667766 9999999999999999999521 0011111 11100000 0 00
Q ss_pred --chhhccchhHHH-HHHHHHHHHhCCCCeEEEEeCCCCCCCHHH----------------HHHHHHHHHHHHHhCCCCc
Q 043119 599 --HMTAEQSSFMID-LHQVGMMLRQATSQSLCLLDEFGKGTLTED----------------GIGLLGGTINYFVTCDVPP 659 (792)
Q Consensus 599 --~~~~~~s~f~~e-~~~~~~~l~~~~~~slvllDE~~~gt~~~~----------------~~~l~~~~~~~l~~~~~~~ 659 (792)
.........+.+ .++++.+...+.++.++++|||++|.|+.. ...+ ..++..+.+. +.
T Consensus 74 ~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l-~~~l~~l~~~--g~ 150 (171)
T 4gp7_A 74 KLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQM-KKSIKGLQRE--GF 150 (171)
T ss_dssp CCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHH-HHHSTTHHHH--TC
T ss_pred CeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHh-hhhhhhHHhc--CC
Confidence 000001111333 444555555678999999999999999983 2444 3445555544 57
Q ss_pred EEEEEccChhhhh
Q 043119 660 KVLVCTHLTELLN 672 (792)
Q Consensus 660 ~~l~~TH~~~l~~ 672 (792)
++|++||+++.+.
T Consensus 151 tvi~vtH~~~~~~ 163 (171)
T 4gp7_A 151 RYVYILNSPEEVE 163 (171)
T ss_dssp SEEEEECSHHHHH
T ss_pred cEEEEeCCHHHhh
Confidence 8999999999875
No 43
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.33 E-value=1.1e-12 Score=143.68 Aligned_cols=144 Identities=12% Similarity=0.077 Sum_probs=91.9
Q ss_pred CcEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhh
Q 043119 522 PLLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF--------------------LSH 580 (792)
Q Consensus 522 ~~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~--------------------laq 580 (792)
..|.+++...-+- ..+..+.++++|+.. |++++|+|||||||||+||+|+++.- ..+
T Consensus 18 ~~i~~~~l~~~y~--~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 18 GQMTVKDLTAKYT--EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp CCEEEEEEEEESS--SSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHT
T ss_pred CeEEEEEEEEEec--CCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCC
Confidence 3477777655441 123567889999998 99999999999999999999987631 011
Q ss_pred cCccccCCceeee--ccc----------------------ccchhhccch-----------hHHHH-HHHHHHHHhCCCC
Q 043119 581 IGSFVPADAATVG--LTD----------------------SKHMTAEQSS-----------FMIDL-HQVGMMLRQATSQ 624 (792)
Q Consensus 581 ~g~~vpa~~~~~~--~~~----------------------~~~~~~~~s~-----------f~~e~-~~~~~~l~~~~~~ 624 (792)
+| +||...+-++ +.+ ......-.+. ++.++ ++++.+...+.+|
T Consensus 96 ig-~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P 174 (390)
T 3gd7_A 96 FG-VIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 174 (390)
T ss_dssp EE-EESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTC
T ss_pred EE-EEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCC
Confidence 22 3444332111 000 0000000111 44444 4455555557999
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 625 SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 625 slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+++|||||++|+|+.....+. ..++.+. .+.++|++||+.+...
T Consensus 175 ~lLLLDEPts~LD~~~~~~l~-~~l~~~~---~~~tvi~vtHd~e~~~ 218 (390)
T 3gd7_A 175 KILLLDEPSAHLDPVTYQIIR-RTLKQAF---ADCTVILCEARIEAML 218 (390)
T ss_dssp CEEEEESHHHHSCHHHHHHHH-HHHHTTT---TTSCEEEECSSSGGGT
T ss_pred CEEEEeCCccCCCHHHHHHHH-HHHHHHh---CCCEEEEEEcCHHHHH
Confidence 999999999999998877774 3444432 2578999999987653
No 44
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.30 E-value=5.1e-12 Score=144.54 Aligned_cols=125 Identities=14% Similarity=0.119 Sum_probs=81.5
Q ss_pred eecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------hcCccccCCcee---eeccc------------------
Q 043119 547 RIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------HIGSFVPADAAT---VGLTD------------------ 596 (792)
Q Consensus 547 ~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------q~g~~vpa~~~~---~~~~~------------------ 596 (792)
+++.. |++++|+||||||||||+|+++++.-.. ..-.++|..... ..+.+
T Consensus 288 ~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~ 367 (538)
T 3ozx_A 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFE 367 (538)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHH
T ss_pred cceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHH
Confidence 34444 8999999999999999999998754211 111233432110 00000
Q ss_pred --------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccC
Q 043119 597 --------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHL 667 (792)
Q Consensus 597 --------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~ 667 (792)
.+......++++.++ ++++.+...+.+|+++|+|||++|.|+.....+. .+++.+.+.. +.++|++||+
T Consensus 368 ~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~-~~l~~l~~~~-g~tvi~vsHd 445 (538)
T 3ozx_A 368 EVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVA-KAIKRVTRER-KAVTFIIDHD 445 (538)
T ss_dssp HTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHHT-TCEEEEECSC
T ss_pred HHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhC-CCEEEEEeCC
Confidence 001112234455444 4555555567999999999999999999888885 5666765432 6799999999
Q ss_pred hhhhhc
Q 043119 668 TELLNE 673 (792)
Q Consensus 668 ~~l~~~ 673 (792)
++++..
T Consensus 446 l~~~~~ 451 (538)
T 3ozx_A 446 LSIHDY 451 (538)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998763
No 45
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.30 E-value=5.3e-12 Score=146.39 Aligned_cols=127 Identities=17% Similarity=0.147 Sum_probs=82.8
Q ss_pred ceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh-------hcCccccCCcee---eeccc-----------------
Q 043119 545 DTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS-------HIGSFVPADAAT---VGLTD----------------- 596 (792)
Q Consensus 545 ~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la-------q~g~~vpa~~~~---~~~~~----------------- 596 (792)
.++++.. |++++|+||||||||||||+++++.-.. ..-.|||..... ..+.+
T Consensus 374 ~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~ 453 (607)
T 3bk7_A 374 VEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKT 453 (607)
T ss_dssp ECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHH
T ss_pred ecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHH
Confidence 3334344 8999999999999999999998764211 111245544211 00000
Q ss_pred --------ccchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccC
Q 043119 597 --------SKHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHL 667 (792)
Q Consensus 597 --------~~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~ 667 (792)
.+......++++. |.++++.+...+.+++++|||||++|+|+.....+. .+++.+.+. .+.++|++||+
T Consensus 454 ~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~~-~g~tvi~vsHd 531 (607)
T 3bk7_A 454 ELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS-RAIRHLMEK-NEKTALVVEHD 531 (607)
T ss_dssp HTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHH-HHHHHHHHH-TTCEEEEECSC
T ss_pred HHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHh-CCCEEEEEeCC
Confidence 0001111334444 445555556668999999999999999999888885 566666532 15799999999
Q ss_pred hhhhhc
Q 043119 668 TELLNE 673 (792)
Q Consensus 668 ~~l~~~ 673 (792)
.+++..
T Consensus 532 ~~~~~~ 537 (607)
T 3bk7_A 532 VLMIDY 537 (607)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998763
No 46
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.29 E-value=4.2e-12 Score=146.91 Aligned_cols=129 Identities=19% Similarity=0.200 Sum_probs=85.1
Q ss_pred eccceeecCC-C-----cEEEEEcCCCCCchhHHHHHHHHHHHhhcC--------ccccCCceee---ecc---------
Q 043119 542 IPNDTRIDND-G-----RINIITGPNYSGKSIYIKQVALIVFLSHIG--------SFVPADAATV---GLT--------- 595 (792)
Q Consensus 542 v~n~~~~~~~-~-----~~~~ltGpN~~GKSt~lk~i~~~~~laq~g--------~~vpa~~~~~---~~~--------- 595 (792)
+.++++|+.. | ++++|+||||||||||+|+++++.-.. -| .++|...... .+.
T Consensus 362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~-~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~ 440 (608)
T 3j16_B 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD-EGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRG 440 (608)
T ss_dssp ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS-BCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSS
T ss_pred ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC-CCcCccCCcEEEecccccccCCccHHHHHHHHhhc
Confidence 4567777765 4 789999999999999999998764321 12 2333321100 000
Q ss_pred ---c-------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Q 043119 596 ---D-------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVP 658 (792)
Q Consensus 596 ---~-------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~ 658 (792)
+ .+......++++.++ ++++.+...+.+|+++|+|||++|.|+.....+. .+++.+... .+
T Consensus 441 ~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~-~ll~~l~~~-~g 518 (608)
T 3j16_B 441 QFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICS-KVIRRFILH-NK 518 (608)
T ss_dssp TTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHH-HHHHHHHHH-HT
T ss_pred ccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHh-CC
Confidence 0 000111234555544 4555555668999999999999999999888885 466666432 15
Q ss_pred cEEEEEccChhhhhc
Q 043119 659 PKVLVCTHLTELLNE 673 (792)
Q Consensus 659 ~~~l~~TH~~~l~~~ 673 (792)
.++|++||+++++..
T Consensus 519 ~tviivtHdl~~~~~ 533 (608)
T 3j16_B 519 KTAFIVEHDFIMATY 533 (608)
T ss_dssp CEEEEECSCHHHHHH
T ss_pred CEEEEEeCCHHHHHH
Confidence 799999999998763
No 47
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.29 E-value=5.5e-12 Score=144.69 Aligned_cols=128 Identities=20% Similarity=0.170 Sum_probs=82.3
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--h------------cCc-----------------cccCC
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--H------------IGS-----------------FVPAD 588 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--q------------~g~-----------------~vpa~ 588 (792)
++..+++ ... |++++|+||||||||||||+++++.... . .|. +++..
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~ 114 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQY 114 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSC
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhh
Confidence 3556777 655 9999999999999999999998753110 0 010 11110
Q ss_pred ceeee------cc------c--------------ccchhhccchhHHHHHH-HHHHHHhCCCCeEEEEeCCCCCCCHHHH
Q 043119 589 AATVG------LT------D--------------SKHMTAEQSSFMIDLHQ-VGMMLRQATSQSLCLLDEFGKGTLTEDG 641 (792)
Q Consensus 589 ~~~~~------~~------~--------------~~~~~~~~s~f~~e~~~-~~~~l~~~~~~slvllDE~~~gt~~~~~ 641 (792)
-...+ +. + ........++++.++++ ++.+...+.+|+++|||||++|+|+...
T Consensus 115 ~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~ 194 (538)
T 1yqt_A 115 VDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQR 194 (538)
T ss_dssp GGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHH
T ss_pred hhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHH
Confidence 00000 00 0 01111223455554444 4444445789999999999999999888
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 642 IGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 642 ~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+. .+++.+.+. +.++|++||+.+++.
T Consensus 195 ~~l~-~~L~~l~~~--g~tvi~vsHd~~~~~ 222 (538)
T 1yqt_A 195 LNAA-RAIRRLSEE--GKSVLVVEHDLAVLD 222 (538)
T ss_dssp HHHH-HHHHHHHHT--TCEEEEECSCHHHHH
T ss_pred HHHH-HHHHHHHhc--CCEEEEEeCCHHHHH
Confidence 8885 577777764 679999999988764
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.28 E-value=9.5e-12 Score=144.23 Aligned_cols=128 Identities=18% Similarity=0.175 Sum_probs=83.1
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--h------------cCc-----------------cccCC
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--H------------IGS-----------------FVPAD 588 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--q------------~g~-----------------~vpa~ 588 (792)
++..+++ ... |++++|+||||||||||||.++++.... . .|. ++|..
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~ 184 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQY 184 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSC
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeech
Confidence 4677777 655 9999999999999999999997643110 0 010 11110
Q ss_pred ceee------ec------cc--------------ccchhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHH
Q 043119 589 AATV------GL------TD--------------SKHMTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDG 641 (792)
Q Consensus 589 ~~~~------~~------~~--------------~~~~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~ 641 (792)
-... .+ .+ ........++++.++ ++++.+...+.+|+++|||||++|+|+...
T Consensus 185 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~ 264 (607)
T 3bk7_A 185 VDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQR 264 (607)
T ss_dssp GGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHH
T ss_pred hhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHH
Confidence 0000 00 00 011122234455444 444444555799999999999999999988
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 642 IGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 642 ~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+. .+++.+.+. +.++|++||+++++.
T Consensus 265 ~~l~-~~L~~l~~~--g~tvIivsHdl~~~~ 292 (607)
T 3bk7_A 265 LKVA-RVIRRLANE--GKAVLVVEHDLAVLD 292 (607)
T ss_dssp HHHH-HHHHHHHHT--TCEEEEECSCHHHHH
T ss_pred HHHH-HHHHHHHhc--CCEEEEEecChHHHH
Confidence 8885 577777664 679999999998764
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.27 E-value=1e-11 Score=142.39 Aligned_cols=126 Identities=17% Similarity=0.181 Sum_probs=82.2
Q ss_pred ceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh--------hcCccccCCcee---eeccc----------------
Q 043119 545 DTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS--------HIGSFVPADAAT---VGLTD---------------- 596 (792)
Q Consensus 545 ~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la--------q~g~~vpa~~~~---~~~~~---------------- 596 (792)
.++++.. |++++|+||||||||||+|+++++.-.. .+ .|||..... ..+.+
T Consensus 304 ~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i-~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~ 382 (538)
T 1yqt_A 304 VEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTV-AYKPQYIKADYEGTVYELLSKIDASKLNSNFYK 382 (538)
T ss_dssp ECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCE-EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHH
T ss_pred eCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceE-EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHH
Confidence 3334344 8999999999999999999998764221 12 245544321 00000
Q ss_pred ---------ccchhhccchhHH-HHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEcc
Q 043119 597 ---------SKHMTAEQSSFMI-DLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTH 666 (792)
Q Consensus 597 ---------~~~~~~~~s~f~~-e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH 666 (792)
........++++. |.++++.+...+.+|.++|||||++|.|+.....+. .+++.+.+. .+.++|++||
T Consensus 383 ~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~-~~l~~l~~~-~g~tvi~vsH 460 (538)
T 1yqt_A 383 TELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS-RAIRHLMEK-NEKTALVVEH 460 (538)
T ss_dssp HHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHH-HHHHHHHHH-HTCEEEEECS
T ss_pred HHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHh-CCCEEEEEeC
Confidence 0001111234444 445555555568999999999999999999888885 566666532 1569999999
Q ss_pred Chhhhhc
Q 043119 667 LTELLNE 673 (792)
Q Consensus 667 ~~~l~~~ 673 (792)
+.+++..
T Consensus 461 d~~~~~~ 467 (538)
T 1yqt_A 461 DVLMIDY 467 (538)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 9998763
No 50
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.26 E-value=1.8e-11 Score=142.25 Aligned_cols=143 Identities=11% Similarity=0.145 Sum_probs=93.7
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH---------------------Hhh
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF---------------------LSH 580 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~---------------------laq 580 (792)
.+.+++...-+- ..+..+.+|++|+.+ |++++|+|||||||||++|.+++..- ..+
T Consensus 341 ~i~~~~v~~~y~--~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 418 (587)
T 3qf4_A 341 SVSFENVEFRYF--ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGH 418 (587)
T ss_dssp CEEEEEEEECSS--SSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHH
T ss_pred cEEEEEEEEEcC--CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhh
Confidence 466666543321 123567889999998 99999999999999999998875431 122
Q ss_pred cCccccCCceee--eccc---------c--------------c-----------chhhccchhHHHH-HHHHHHHHhCCC
Q 043119 581 IGSFVPADAATV--GLTD---------S--------------K-----------HMTAEQSSFMIDL-HQVGMMLRQATS 623 (792)
Q Consensus 581 ~g~~vpa~~~~~--~~~~---------~--------------~-----------~~~~~~s~f~~e~-~~~~~~l~~~~~ 623 (792)
+| |||.+..-+ ++.+ . + .....-..+++++ ++++.+...+.+
T Consensus 419 i~-~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~ 497 (587)
T 3qf4_A 419 IS-AVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKK 497 (587)
T ss_dssp EE-EECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTC
T ss_pred eE-EECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcC
Confidence 33 455543211 0000 0 0 0011123444444 445555555799
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 624 QSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 624 ~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|+++|+|||++|.|+.....+.. .++.+.+ +.|+|++||+++.+.
T Consensus 498 p~illlDEpts~LD~~~~~~i~~-~l~~~~~---~~tvi~itH~l~~~~ 542 (587)
T 3qf4_A 498 PKVLILDDCTSSVDPITEKRILD-GLKRYTK---GCTTFIITQKIPTAL 542 (587)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHH-HHHHHST---TCEEEEEESCHHHHT
T ss_pred CCEEEEECCcccCCHHHHHHHHH-HHHHhCC---CCEEEEEecChHHHH
Confidence 99999999999999998888865 4555532 579999999998864
No 51
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.26 E-value=1.5e-11 Score=142.89 Aligned_cols=144 Identities=15% Similarity=0.162 Sum_probs=92.4
Q ss_pred CcEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH---------------------Hh
Q 043119 522 PLLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF---------------------LS 579 (792)
Q Consensus 522 ~~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~---------------------la 579 (792)
+.+.+++...-+- ..+..+.+|++++.+ |++++|+|||||||||++|.+++..- ..
T Consensus 338 ~~i~~~~v~~~y~--~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~ 415 (578)
T 4a82_A 338 GRIDIDHVSFQYN--DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 415 (578)
T ss_dssp CCEEEEEEEECSC--SSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CeEEEEEEEEEcC--CCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhh
Confidence 3466666543331 123468899999998 99999999999999999998865431 11
Q ss_pred hcCccccCCceee----------eccc-c--------------c-----------chhhccchhHHHH-HHHHHHHHhCC
Q 043119 580 HIGSFVPADAATV----------GLTD-S--------------K-----------HMTAEQSSFMIDL-HQVGMMLRQAT 622 (792)
Q Consensus 580 q~g~~vpa~~~~~----------~~~~-~--------------~-----------~~~~~~s~f~~e~-~~~~~~l~~~~ 622 (792)
++| +||.+..-+ +..+ . + .+...-+.+++++ ++++.+...+.
T Consensus 416 ~i~-~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~ 494 (578)
T 4a82_A 416 QIG-LVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 494 (578)
T ss_dssp TEE-EECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred heE-EEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc
Confidence 222 455543211 0000 0 0 0001113444444 44554555578
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 623 SQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 623 ~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+|+++|+|||++|.|+.....+. ..++.+.+ +.++|++||+++.+.
T Consensus 495 ~p~illlDEpts~LD~~~~~~i~-~~l~~~~~---~~t~i~itH~l~~~~ 540 (578)
T 4a82_A 495 NPPILILDEATSALDLESESIIQ-EALDVLSK---DRTTLIVAHRLSTIT 540 (578)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHH-HHHHHHTT---TSEEEEECSSGGGTT
T ss_pred CCCEEEEECccccCCHHHHHHHH-HHHHHHcC---CCEEEEEecCHHHHH
Confidence 99999999999999998776664 45665543 569999999998764
No 52
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.25 E-value=6.2e-11 Score=137.87 Aligned_cols=143 Identities=15% Similarity=0.153 Sum_probs=93.5
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH---------------------hh
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL---------------------SH 580 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l---------------------aq 580 (792)
.+.+++...-+- ..+..+.+|++++.+ |++++|+|||||||||++|.+++..-. .+
T Consensus 341 ~i~~~~v~~~y~--~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b5x_A 341 EVDVKDVTFTYQ--GKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418 (582)
T ss_pred eEEEEEEEEEcC--CCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcC
Confidence 466666544331 012568899999998 999999999999999999999765311 12
Q ss_pred cCccccCCcee----------eec---cc-cc------------c-----------hhhccchhHHHH-HHHHHHHHhCC
Q 043119 581 IGSFVPADAAT----------VGL---TD-SK------------H-----------MTAEQSSFMIDL-HQVGMMLRQAT 622 (792)
Q Consensus 581 ~g~~vpa~~~~----------~~~---~~-~~------------~-----------~~~~~s~f~~e~-~~~~~~l~~~~ 622 (792)
+ .+||.+..- ++. .+ .+ . +...-+.+++++ ++++.+...+.
T Consensus 419 i-~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~ 497 (582)
T 3b5x_A 419 F-ALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLR 497 (582)
T ss_pred e-EEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHc
Confidence 2 245544211 111 00 00 0 000113455444 45555555579
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 623 SQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 623 ~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+|+++|+|||++|.|+.....+. ..++.+.+ +.++|++||+++.+.
T Consensus 498 ~p~illlDEpts~LD~~~~~~i~-~~l~~~~~---~~tvi~itH~~~~~~ 543 (582)
T 3b5x_A 498 DAPVLILDEATSALDTESERAIQ-AALDELQK---NKTVLVIAHRLSTIE 543 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHH-HHHHHHcC---CCEEEEEecCHHHHH
Confidence 99999999999999998888875 45555543 579999999998764
No 53
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.24 E-value=9.6e-11 Score=136.24 Aligned_cols=143 Identities=12% Similarity=0.115 Sum_probs=93.3
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH---------------------Hhh
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF---------------------LSH 580 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~---------------------laq 580 (792)
.+.+++...-+- ..+..+.+|++++.+ |++++|+|||||||||++|.++++.- ..+
T Consensus 341 ~i~~~~v~~~y~--~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b60_A 341 DLEFRNVTFTYP--GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 418 (582)
T ss_dssp CEEEEEEEECSS--SSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred cEEEEEEEEEcC--CCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhh
Confidence 467766554331 011467889999998 99999999999999999999876531 112
Q ss_pred cCccccCCceee----------ec---cc-c------------cch-----------hhccchhHHHH-HHHHHHHHhCC
Q 043119 581 IGSFVPADAATV----------GL---TD-S------------KHM-----------TAEQSSFMIDL-HQVGMMLRQAT 622 (792)
Q Consensus 581 ~g~~vpa~~~~~----------~~---~~-~------------~~~-----------~~~~s~f~~e~-~~~~~~l~~~~ 622 (792)
+| +||.+..-+ +. .+ . +.+ ...-+.+++++ ++++.+...+.
T Consensus 419 i~-~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~ 497 (582)
T 3b60_A 419 VA-LVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_dssp EE-EECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred Ce-EEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh
Confidence 22 455542211 10 00 0 000 00113455444 44555555578
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 623 SQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 623 ~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+|+++|+|||++|.|+.....+. ..++.+.+ +.++|++||+++.+.
T Consensus 498 ~p~illlDEpts~LD~~~~~~i~-~~l~~~~~---~~tvi~itH~~~~~~ 543 (582)
T 3b60_A 498 DSPILILDEATSALDTESERAIQ-AALDELQK---NRTSLVIAHRLSTIE 543 (582)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHH-HHHHHHHT---TSEEEEECSCGGGTT
T ss_pred CCCEEEEECccccCCHHHHHHHH-HHHHHHhC---CCEEEEEeccHHHHH
Confidence 99999999999999998888875 45666654 579999999998754
No 54
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.23 E-value=2.9e-11 Score=139.93 Aligned_cols=66 Identities=11% Similarity=0.059 Sum_probs=50.2
Q ss_pred cchhHHHHHH-HHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 604 QSSFMIDLHQ-VGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 604 ~s~f~~e~~~-~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.++++.+++| ++.+...+.+|+++|||||++|+|+.....+. .+++.+.+. +.++|++||+++.+.
T Consensus 219 ~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~-~~l~~l~~~--g~tvi~vtHdl~~~~ 285 (608)
T 3j16_B 219 IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAA-QIIRSLLAP--TKYVICVEHDLSVLD 285 (608)
T ss_dssp TTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHH-HHHHGGGTT--TCEEEEECSCHHHHH
T ss_pred hHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHH-HHHHHHHhC--CCEEEEEeCCHHHHH
Confidence 4455554444 44444457899999999999999999988885 577777664 579999999998765
No 55
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.22 E-value=9.8e-11 Score=136.47 Aligned_cols=143 Identities=14% Similarity=0.180 Sum_probs=94.2
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH---------------------Hhh
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF---------------------LSH 580 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~---------------------laq 580 (792)
.+.+++...-+ ..+..+.+|++++.+ |++++|+|||||||||++|.++++.- ..+
T Consensus 354 ~i~~~~v~~~y---~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~ 430 (598)
T 3qf4_B 354 EIEFKNVWFSY---DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSS 430 (598)
T ss_dssp CEEEEEEECCS---SSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred eEEEEEEEEEC---CCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhc
Confidence 46776654433 123568899999998 99999999999999999999875431 112
Q ss_pred cCccccCCceee----------ec--cc-cc---------------chh--------hccchhHHHH-HHHHHHHHhCCC
Q 043119 581 IGSFVPADAATV----------GL--TD-SK---------------HMT--------AEQSSFMIDL-HQVGMMLRQATS 623 (792)
Q Consensus 581 ~g~~vpa~~~~~----------~~--~~-~~---------------~~~--------~~~s~f~~e~-~~~~~~l~~~~~ 623 (792)
+| +||.+..-+ +. .+ .+ ... ..-..+++++ ++++.+...+.+
T Consensus 431 i~-~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~ 509 (598)
T 3qf4_B 431 IG-IVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLAN 509 (598)
T ss_dssp EE-EECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTC
T ss_pred eE-EEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 32 455443211 00 00 00 000 0113444444 445555555789
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 624 QSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 624 ~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
|+++|+|||++|.|+.....+.. .+..+.+ +.|+|++||+++.+..
T Consensus 510 p~illlDEpts~LD~~~~~~i~~-~l~~~~~---~~t~i~itH~l~~~~~ 555 (598)
T 3qf4_B 510 PKILILDEATSNVDTKTEKSIQA-AMWKLME---GKTSIIIAHRLNTIKN 555 (598)
T ss_dssp CSEEEECCCCTTCCHHHHHHHHH-HHHHHHT---TSEEEEESCCTTHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHH-HHHHHcC---CCEEEEEecCHHHHHc
Confidence 99999999999999998888854 5555543 5799999999988753
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.21 E-value=3.1e-11 Score=142.83 Aligned_cols=66 Identities=17% Similarity=0.133 Sum_probs=48.8
Q ss_pred cchhHHHHHHHHHH-HHhCCCCe--EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 604 QSSFMIDLHQVGMM-LRQATSQS--LCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 604 ~s~f~~e~~~~~~~-l~~~~~~s--lvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.++++.+++|...+ ...+.+|+ ++|+|||++|.|+.....+. .+++.+.+. +.++|++||+++++.
T Consensus 200 ~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~-~~l~~l~~~--g~tvi~vtHd~~~~~ 268 (670)
T 3ux8_A 200 AGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLI-ATLKSMRDL--GNTLIVVEHDEDTML 268 (670)
T ss_dssp GGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHHT--TCEEEEECCCHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHH-HHHHHHHHc--CCEEEEEeCCHHHHh
Confidence 34555555443333 33356666 99999999999999999985 577778765 679999999998764
No 57
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.20 E-value=7.5e-11 Score=137.52 Aligned_cols=143 Identities=17% Similarity=0.210 Sum_probs=92.7
Q ss_pred EEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH---------------------Hhhc
Q 043119 524 LDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF---------------------LSHI 581 (792)
Q Consensus 524 l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~---------------------laq~ 581 (792)
+.+++...-+-. ..+..+.+|++++.+ |++++|+|||||||||++|.++++.- ..++
T Consensus 342 i~~~~v~~~y~~-~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i 420 (595)
T 2yl4_A 342 LEFKNVHFAYPA-RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKI 420 (595)
T ss_dssp EEEEEEEEECSS-CTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSE
T ss_pred EEEEEEEEEeCC-CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhce
Confidence 677665543310 012468899999998 99999999999999999999876531 1122
Q ss_pred CccccCCceee----------ec-----cc-cc---------------c--------hhhccchhHHHH-HHHHHHHHhC
Q 043119 582 GSFVPADAATV----------GL-----TD-SK---------------H--------MTAEQSSFMIDL-HQVGMMLRQA 621 (792)
Q Consensus 582 g~~vpa~~~~~----------~~-----~~-~~---------------~--------~~~~~s~f~~e~-~~~~~~l~~~ 621 (792)
| +||.+..-+ +. .+ .+ . +...-+.+++++ ++++.+...+
T Consensus 421 ~-~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~ 499 (595)
T 2yl4_A 421 G-TVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALL 499 (595)
T ss_dssp E-EECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHH
T ss_pred E-EEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHH
Confidence 2 455442110 00 11 00 0 000014455444 4455555557
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 622 TSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 622 ~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+|+++|+|||++|.|+.....+. ..++.+.+ +.++|++||+++.+.
T Consensus 500 ~~p~illlDEpts~LD~~~~~~i~-~~l~~~~~---~~tvi~itH~~~~~~ 546 (595)
T 2yl4_A 500 KNPKILLLDEATSALDAENEYLVQ-EALDRLMD---GRTVLVIAHRLSTIK 546 (595)
T ss_dssp HCCSEEEEECCCSSCCHHHHHHHH-HHHHHHHT---TSEEEEECCCHHHHH
T ss_pred cCCCEEEEECcccCCCHHHHHHHH-HHHHHHhc---CCEEEEEecCHHHHH
Confidence 899999999999999998777774 45666654 469999999998765
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.19 E-value=7e-11 Score=135.17 Aligned_cols=65 Identities=11% Similarity=0.051 Sum_probs=49.0
Q ss_pred cchhHHHHHH-HHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 604 QSSFMIDLHQ-VGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 604 ~s~f~~e~~~-~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.++++.+++| ++.+...+.+|+++|||||++|+|+.....+. .+++.+.+ +.++|++||+++.+.
T Consensus 136 ~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~-~~l~~l~~---g~tii~vsHdl~~~~ 201 (538)
T 3ozx_A 136 ANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMA-KAIRELLK---NKYVIVVDHDLIVLD 201 (538)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHH-HHHHHHCT---TSEEEEECSCHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH-HHHHHHhC---CCEEEEEEeChHHHH
Confidence 4455554444 44444447899999999999999999988885 57777754 579999999998764
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.19 E-value=1.4e-10 Score=139.11 Aligned_cols=128 Identities=19% Similarity=0.193 Sum_probs=81.9
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh-----hcC-ccccCCc-e---eeecc----------c-
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS-----HIG-SFVPADA-A---TVGLT----------D- 596 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la-----q~g-~~vpa~~-~---~~~~~----------~- 596 (792)
+..+.++++|+.. |++++|+||||||||||||+++.-.+.+ ..+ .|+|... . .+.+. .
T Consensus 447 ~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~ 526 (986)
T 2iw3_A 447 AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKE 526 (986)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHH
T ss_pred CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHH
Confidence 4567889999988 9999999999999999999997411100 000 1333211 0 00000 0
Q ss_pred -----------c-cchhhccchhHHHHHH-HHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEE
Q 043119 597 -----------S-KHMTAEQSSFMIDLHQ-VGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLV 663 (792)
Q Consensus 597 -----------~-~~~~~~~s~f~~e~~~-~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~ 663 (792)
. .......++++.++++ ++.+...+.+|+++|||||++|+|+.....+. .++.. . +.++|+
T Consensus 527 ~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~-~~L~~---~--g~tvIi 600 (986)
T 2iw3_A 527 AIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLV-NYLNT---C--GITSIT 600 (986)
T ss_dssp HHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHH-HHHHH---S--CSEEEE
T ss_pred HHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHH-HHHHh---C--CCEEEE
Confidence 0 0011123445555444 44444457899999999999999998877764 34443 3 679999
Q ss_pred EccChhhhh
Q 043119 664 CTHLTELLN 672 (792)
Q Consensus 664 ~TH~~~l~~ 672 (792)
+||+.+.+.
T Consensus 601 vSHdl~~l~ 609 (986)
T 2iw3_A 601 ISHDSVFLD 609 (986)
T ss_dssp ECSCHHHHH
T ss_pred EECCHHHHH
Confidence 999988764
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.18 E-value=7e-11 Score=139.78 Aligned_cols=65 Identities=22% Similarity=0.226 Sum_probs=47.5
Q ss_pred chhHHHHHHHHHHH-HhCC---CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 605 SSFMIDLHQVGMML-RQAT---SQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 605 s~f~~e~~~~~~~l-~~~~---~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
++++.+++|...+. ..+. +|+++|+|||++|.|+.....+. .+++.+.+. +.++|++||+++++.
T Consensus 542 ~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~-~~l~~l~~~--g~tvi~vtHd~~~~~ 610 (670)
T 3ux8_A 542 TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDN--GDTVLVIEHNLDVIK 610 (670)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHH-HHHHHHHHT--TCEEEEECCCHHHHT
T ss_pred hhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHC--CCEEEEEeCCHHHHH
Confidence 44555554433333 2333 35799999999999999999885 577777765 679999999999864
No 61
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.13 E-value=7.6e-11 Score=115.27 Aligned_cols=113 Identities=14% Similarity=0.040 Sum_probs=67.6
Q ss_pred EEEEEcCCCCCchhHHHHHHHHHHHhhcCcccc-----CCceeeecccc-----------------cchhhccchhHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVALIVFLSHIGSFVP-----ADAATVGLTDS-----------------KHMTAEQSSFMIDL 611 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vp-----a~~~~~~~~~~-----------------~~~~~~~s~f~~e~ 611 (792)
.++|+|||||||||++|.++...-..-.|.... .....++.... .......+.++.++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~ 81 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE 81 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHHH
Confidence 578999999999999999987763222232211 00111111100 01122234566666
Q ss_pred HHHHHHHH------hCCCCeEEEEeC--CCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEcc---Chhhhh
Q 043119 612 HQVGMMLR------QATSQSLCLLDE--FGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTH---LTELLN 672 (792)
Q Consensus 612 ~~~~~~l~------~~~~~slvllDE--~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH---~~~l~~ 672 (792)
++...++. .+.+++++|+|| |+.|.|+.....+ .+.+.+. ++++|++|| +.++++
T Consensus 82 ~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l----~~~l~~~--~~~~i~~~H~~h~~~~~~ 147 (178)
T 1ye8_A 82 ELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLV----RQIMHDP--NVNVVATIPIRDVHPLVK 147 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHH----HHHHTCT--TSEEEEECCSSCCSHHHH
T ss_pred HHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHH----HHHHhcC--CCeEEEEEccCCCchHHH
Confidence 55444444 478999999999 9999998665444 3333332 567888886 666665
No 62
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.08 E-value=5.9e-10 Score=124.28 Aligned_cols=111 Identities=18% Similarity=0.199 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHhCCCC--eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhcCCCCCCCceeEEE
Q 043119 609 IDLHQVGMMLRQATSQ--SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYT 686 (792)
Q Consensus 609 ~e~~~~~~~l~~~~~~--slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~~~~~~~~~v~~~~ 686 (792)
+|.+++..++..+.++ +++|||||++|+|+.....+. ..++.+.+ +.++|++||+++++.. .+. .+.
T Consensus 299 Ge~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~-~~L~~l~~---~~~vi~itH~~~~~~~-----~d~--i~~ 367 (415)
T 4aby_A 299 GELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVA-EQLSRLAD---TRQVLVVTHLAQIAAR-----AHH--HYK 367 (415)
T ss_dssp HHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHH-HHHHHHTT---TSEEEEECSCHHHHTT-----CSE--EEE
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHhC---CCEEEEEeCcHHHHhh-----cCe--EEE
Confidence 3445555555556777 999999999999999888885 46666653 5799999999988742 122 223
Q ss_pred EEEeeccCCCCCCCceEEeEEeecCCCCCcHHHHHHHHc-C-CCHHHHHHHHHHH
Q 043119 687 MSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLA-G-VPAEVIKRAAYVL 739 (792)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~~A~~~-g-~p~~ii~~A~~~~ 739 (792)
|.-...+ +.+.-..+. ....----++|+++ | +.++.++.|++++
T Consensus 368 l~k~~~~------G~~~~~~~~---l~~~~~~~ei~~~~~g~~~~~~~~~a~~~~ 413 (415)
T 4aby_A 368 VEKQVED------GRTVSHVRL---LTGDERLEEIARMLSGNTSEAALEHARELL 413 (415)
T ss_dssp EEEEEET------TEEEEEEEE---CCSHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred EEEeccC------CceEEEEEE---CCchhhHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 3211111 333322221 11122235678876 4 6788888888765
No 63
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.06 E-value=5e-10 Score=134.38 Aligned_cols=65 Identities=20% Similarity=0.222 Sum_probs=48.2
Q ss_pred chhHHHHHH-HHHHHHhCC---CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 605 SSFMIDLHQ-VGMMLRQAT---SQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 605 s~f~~e~~~-~~~~l~~~~---~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
++++++++| ++.+...+. ++.|+|||||++|+|+.+...+. .+++.+.+. +.++|++||+++++.
T Consensus 804 ~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~-~lL~~L~~~--G~TVIvI~HdL~~i~ 872 (916)
T 3pih_A 804 TTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLV-EVLHRLVDR--GNTVIVIEHNLDVIK 872 (916)
T ss_dssp TTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHH-HHHHHHHHT--TCEEEEECCCHHHHT
T ss_pred cCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhc--CCEEEEEeCCHHHHH
Confidence 455555444 333333343 46899999999999999998885 577788775 679999999999874
No 64
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.06 E-value=2.6e-11 Score=121.57 Aligned_cols=111 Identities=14% Similarity=0.179 Sum_probs=58.1
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccc------c--CCceeeeccccc---ch-hh------ccch-----hH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFV------P--ADAATVGLTDSK---HM-TA------EQSS-----FM 608 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~v------p--a~~~~~~~~~~~---~~-~~------~~s~-----f~ 608 (792)
|++++|+||||||||||||+++++ -. .-|... | .....++++..+ .+ .. .... -.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl-~p-~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~~~~~~~ 99 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ-AL-QSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDMVEPEVI 99 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH-HH-HTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHHHHTTTSCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC-CC-cCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 889999999999999999999988 43 223210 0 001123332211 11 00 0000 00
Q ss_pred --------HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhc
Q 043119 609 --------IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 609 --------~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~ 673 (792)
+|.++++.+...+.+|+++|||||++| ....+ ..++..+ +. +.++| +||+++.++.
T Consensus 100 ~~~l~~glGq~qrv~lAraL~~~p~lllLDEPts~----~~~~l-~~~l~~l-~~--g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 100 PKLMEAGIVEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQM-KMFLTRL-GF--GSKMV-VTGDITQVDL 163 (208)
T ss_dssp HHHHHTTSEEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHH-HHHHTTB-CT--TCEEE-EEEC------
T ss_pred HHHHHhCCchHHHHHHHHHHhcCCCEEEEeCCccc----cHHHH-HHHHHHh-cC--CCEEE-EECCHHHHhC
Confidence 111112223334679999999999999 22333 2344444 32 57888 9999988763
No 65
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.00 E-value=7.4e-10 Score=131.76 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=49.0
Q ss_pred chhHHHHH-HHHHHHHhCCC---CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 605 SSFMIDLH-QVGMMLRQATS---QSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 605 s~f~~e~~-~~~~~l~~~~~---~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
++++.+++ +++.+...+.+ +.++|||||++|.|+.+...+. .++..+.+. +.++|++||+++++.
T Consensus 729 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~--G~tVIvisHdl~~i~ 797 (842)
T 2vf7_A 729 TELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQ-RQLVKLVDA--GNTVIAVEHKMQVVA 797 (842)
T ss_dssp GGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHH-HHHHHHHHT--TCEEEEECCCHHHHT
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhC--CCEEEEEcCCHHHHH
Confidence 44554444 44444444553 7999999999999999998885 577788765 679999999999873
No 66
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.98 E-value=4.5e-10 Score=134.91 Aligned_cols=62 Identities=15% Similarity=0.024 Sum_probs=44.9
Q ss_pred chhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 605 SSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 605 s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+++++++ ++++.+...+.+|.++|||||++|.|+.....+ .+.+.+. +.++|++||+.+.+.
T Consensus 900 ~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L----~~~L~~~--g~tVIiISHD~e~v~ 962 (986)
T 2iw3_A 900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGAL----SKALKEF--EGGVIIITHSAEFTK 962 (986)
T ss_dssp GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHH----HHHHHSC--SSEEEEECSCHHHHT
T ss_pred cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHH----HHHHHHh--CCEEEEEECCHHHHH
Confidence 3444444 455555556899999999999999999775554 3444443 458999999999875
No 67
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.97 E-value=2.1e-09 Score=117.34 Aligned_cols=48 Identities=15% Similarity=0.055 Sum_probs=40.7
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 622 TSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 622 ~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+|+++|||||++|.|+.....+. .++..+.+. +.++|++||++++..
T Consensus 302 ~~p~~lllDEpt~~LD~~~~~~~~-~~l~~l~~~--g~tvi~itH~~~~~~ 349 (365)
T 3qf7_A 302 GRLDAFFIDEGFSSLDTENKEKIA-SVLKELERL--NKVIVFITHDREFSE 349 (365)
T ss_dssp TTCCEEEEESCCTTSCHHHHHHHH-HHHHGGGGS--SSEEEEEESCHHHHT
T ss_pred CCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHhC--CCEEEEEecchHHHH
Confidence 689999999999999999888885 567777654 679999999998853
No 68
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.97 E-value=3.3e-10 Score=116.80 Aligned_cols=49 Identities=10% Similarity=0.011 Sum_probs=35.8
Q ss_pred CCCCeEEEEeCCCCCCC----HHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhh
Q 043119 621 ATSQSLCLLDEFGKGTL----TEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELL 671 (792)
Q Consensus 621 ~~~~slvllDE~~~gt~----~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~ 671 (792)
..+++++++|||+++.| +.........+++.+.+. ++++|++||+.+.+
T Consensus 133 ~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~--g~tii~vtH~~~~~ 185 (251)
T 2ehv_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEM--GVTTILTTEAPDPQ 185 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHH--CCEEEEEECCC---
T ss_pred hhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHC--CCeEEEEECCCCCC
Confidence 46899999999999975 344444346688888765 67999999998765
No 69
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.95 E-value=2.6e-09 Score=127.72 Aligned_cols=65 Identities=22% Similarity=0.234 Sum_probs=48.3
Q ss_pred chhHHHH-HHHHHHHHhCC---CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 605 SSFMIDL-HQVGMMLRQAT---SQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 605 s~f~~e~-~~~~~~l~~~~---~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
++++.++ ++++.+...+. .+.++|||||++|+|+.+...+. .++..+.+. +.++|++||+++++.
T Consensus 862 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~--G~TVIvisHdl~~i~ 930 (993)
T 2ygr_A 862 PTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLL-NVINGLVDK--GNTVIVIEHNLDVIK 930 (993)
T ss_dssp GGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHH-HHHHHHHHT--TCEEEEECCCHHHHT
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhC--CCEEEEEcCCHHHHH
Confidence 3444444 44444444454 36999999999999999988885 577777765 679999999999863
No 70
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.95 E-value=2.4e-09 Score=127.65 Aligned_cols=65 Identities=22% Similarity=0.273 Sum_probs=48.3
Q ss_pred chhHHHH-HHHHHHHHhCC---CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 605 SSFMIDL-HQVGMMLRQAT---SQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 605 s~f~~e~-~~~~~~l~~~~---~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
++++.++ ++++.+...+. .++++|||||++|.|+.+...+. .++..+.+. +.++|++||+++++.
T Consensus 844 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~--G~TVIvisHdl~~i~ 912 (972)
T 2r6f_A 844 TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDN--GDTVLVIEHNLDVIK 912 (972)
T ss_dssp GGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHH-HHHHHHHHT--TCEEEEECCCHHHHT
T ss_pred hhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhC--CCEEEEEcCCHHHHH
Confidence 3444444 44444444454 36999999999999999988885 577778765 679999999999863
No 71
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.92 E-value=1.3e-09 Score=137.33 Aligned_cols=144 Identities=14% Similarity=0.132 Sum_probs=90.8
Q ss_pred cEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH---------------------Hhh
Q 043119 523 LLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF---------------------LSH 580 (792)
Q Consensus 523 ~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~---------------------laq 580 (792)
.+.+++...-+-. ..+..+.+|++|+.+ |++++|+|||||||||+++.++...- ..+
T Consensus 387 ~i~~~~v~~~y~~-~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 465 (1284)
T 3g5u_A 387 NLEFKNIHFSYPS-RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465 (1284)
T ss_dssp CEEEEEEEECCSS-TTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred eEEEEEEEEEcCC-CCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence 4666665433310 112468899999998 99999999999999999998865421 112
Q ss_pred cCccccCCceee----------ecc--c-------------cc-----------chhhccchhHHHHH-HHHHHHHhCCC
Q 043119 581 IGSFVPADAATV----------GLT--D-------------SK-----------HMTAEQSSFMIDLH-QVGMMLRQATS 623 (792)
Q Consensus 581 ~g~~vpa~~~~~----------~~~--~-------------~~-----------~~~~~~s~f~~e~~-~~~~~l~~~~~ 623 (792)
+| +||.+..-+ +.. + .+ .+...-+.++++.+ +++.+-....+
T Consensus 466 i~-~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~ 544 (1284)
T 3g5u_A 466 IG-VVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRN 544 (1284)
T ss_dssp EE-EECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHC
T ss_pred eE-EEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcC
Confidence 33 455543110 000 0 00 00111234555444 44444444689
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 624 QSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 624 ~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|+++|||||+++.|+.....+ ...++.+.+ ++|+|++||+++.+.
T Consensus 545 p~iliLDEpts~LD~~~~~~i-~~~l~~~~~---~~t~i~itH~l~~i~ 589 (1284)
T 3g5u_A 545 PKILLLDEATSALDTESEAVV-QAALDKARE---GRTTIVIAHRLSTVR 589 (1284)
T ss_dssp CSEEEEESTTCSSCHHHHHHH-HHHHHHHHT---TSEEEEECSCHHHHT
T ss_pred CCEEEEECCCCCCCHHHHHHH-HHHHHHHcC---CCEEEEEecCHHHHH
Confidence 999999999999999766555 445555443 579999999998764
No 72
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.89 E-value=1.1e-08 Score=109.88 Aligned_cols=63 Identities=11% Similarity=0.013 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHHHh-C----CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 606 SFMIDLHQVGMMLRQ-A----TSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 606 ~f~~e~~~~~~~l~~-~----~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.++.++++...+... + .+++++|||||++|+|+.....+. .+++.+.+ +.++|++||+.++.+
T Consensus 219 ~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~-~~l~~~~~---~~~vi~~tH~~~~~~ 286 (322)
T 1e69_A 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFK-RLLKENSK---HTQFIVITHNKIVME 286 (322)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHH-HHHHHHTT---TSEEEEECCCTTGGG
T ss_pred hCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhcC---CCeEEEEECCHHHHh
Confidence 445555444333332 2 678999999999999999888885 46666642 568999999977654
No 73
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.88 E-value=6.5e-09 Score=112.51 Aligned_cols=55 Identities=27% Similarity=0.267 Sum_probs=42.4
Q ss_pred HHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 615 GMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 615 ~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+.+...+.+|+++|+|||++|.|+.....+. .+++.+... +.++|++||+.++.+
T Consensus 264 ~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~-~~l~~~~~~--~~~vi~~sH~~~~~~ 318 (339)
T 3qkt_A 264 AMSLYLAGEISLLILDEPTPYLDEERRRKLI-TIMERYLKK--IPQVILVSHDEELKD 318 (339)
T ss_dssp HHHHHTTTTTCEEEEECCCTTCCHHHHHHHH-HHHHHTGGG--SSEEEEEESCGGGGG
T ss_pred HHHHHhcCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhc--CCEEEEEEChHHHHH
Confidence 3334446789999999999999998888885 466666554 568999999987643
No 74
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.88 E-value=2e-09 Score=135.55 Aligned_cols=127 Identities=12% Similarity=0.131 Sum_probs=84.8
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH---------------------HhhcCccccCCceee------
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF---------------------LSHIGSFVPADAATV------ 592 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~---------------------laq~g~~vpa~~~~~------ 592 (792)
.+.+|++|+.. |++++|+|||||||||+++.++.+.- ..++ .+||.+..-+
T Consensus 1047 ~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i-~~v~Q~~~l~~~ti~e 1125 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQL-GIVSQEPILFDCSIAE 1125 (1284)
T ss_dssp CSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSC-EEEESSCCCCSSBHHH
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhce-EEECCCCccccccHHH
Confidence 57889999998 99999999999999999999875431 1122 2566553211
Q ss_pred ----ec----cc-c------------c---c--------hhhccchhHHHH-HHHHHHHHhCCCCeEEEEeCCCCCCCHH
Q 043119 593 ----GL----TD-S------------K---H--------MTAEQSSFMIDL-HQVGMMLRQATSQSLCLLDEFGKGTLTE 639 (792)
Q Consensus 593 ----~~----~~-~------------~---~--------~~~~~s~f~~e~-~~~~~~l~~~~~~slvllDE~~~gt~~~ 639 (792)
+. .+ . + . +..+-+.++++. ++++.+...+.+|+++|||||++|.|+.
T Consensus 1126 Ni~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~ 1205 (1284)
T 3g5u_A 1126 NIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTE 1205 (1284)
T ss_dssp HHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHH
T ss_pred HHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 00 00 0 0 0 001113455444 4444444456899999999999999998
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 640 DGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 640 ~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
....+. ..++.+.+ ++++|++||+++.+.
T Consensus 1206 ~~~~i~-~~l~~~~~---~~tvi~isH~l~~i~ 1234 (1284)
T 3g5u_A 1206 SEKVVQ-EALDKARE---GRTCIVIAHRLSTIQ 1234 (1284)
T ss_dssp HHHHHH-HHHHHHSS---SSCEEEECSCTTGGG
T ss_pred HHHHHH-HHHHHhCC---CCEEEEEecCHHHHH
Confidence 777664 45554432 679999999998764
No 75
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.87 E-value=1.5e-09 Score=106.09 Aligned_cols=105 Identities=12% Similarity=0.056 Sum_probs=63.0
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeC
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDE 631 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE 631 (792)
++.++|+||||+||||++++++..... ..|..+- .+...+ ....-...+.... ...++....++++++|||
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~-~~g~~~~----~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~llilDE 108 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYE-KKGIRGY----FFDTKD--LIFRLKHLMDEGK--DTKFLKTVLNSPVLVLDD 108 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHH-HSCCCCC----EEEHHH--HHHHHHHHHHHTC--CSHHHHHHHTCSEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH-HcCCeEE----EEEHHH--HHHHHHHHhcCch--HHHHHHHhcCCCEEEEeC
Confidence 789999999999999999998876542 2232110 011111 0000000000000 002233344789999999
Q ss_pred CCC-CCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccCh
Q 043119 632 FGK-GTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLT 668 (792)
Q Consensus 632 ~~~-gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~ 668 (792)
|+. |.|+.....+ ..+++...+. +.++|++||+.
T Consensus 109 ~~~~~~~~~~~~~l-~~ll~~~~~~--~~~ii~tsn~~ 143 (180)
T 3ec2_A 109 LGSERLSDWQRELI-SYIITYRYNN--LKSTIITTNYS 143 (180)
T ss_dssp CSSSCCCHHHHHHH-HHHHHHHHHT--TCEEEEECCCC
T ss_pred CCCCcCCHHHHHHH-HHHHHHHHHc--CCCEEEEcCCC
Confidence 996 8888766655 5677777654 56899999986
No 76
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.83 E-value=3.5e-08 Score=124.60 Aligned_cols=145 Identities=13% Similarity=0.139 Sum_probs=94.3
Q ss_pred CcEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHH---------------------HHh
Q 043119 522 PLLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIV---------------------FLS 579 (792)
Q Consensus 522 ~~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~---------------------~la 579 (792)
+.|.+++...-+- ...+.++.+|++|+.+ |+.++|+||+||||||+++.+.... +..
T Consensus 414 g~I~~~nvsF~Y~-~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~ 492 (1321)
T 4f4c_A 414 GDITVENVHFTYP-SRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRK 492 (1321)
T ss_dssp CCEEEEEEEECCS-SSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHH
T ss_pred CcEEEEEeeeeCC-CCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhh
Confidence 3577777654331 1135689999999999 9999999999999999999885432 122
Q ss_pred hcCccccCCcee----------eecc--c-------------cc-----------chhhccchhH-HHHHHHHHHHHhCC
Q 043119 580 HIGSFVPADAAT----------VGLT--D-------------SK-----------HMTAEQSSFM-IDLHQVGMMLRQAT 622 (792)
Q Consensus 580 q~g~~vpa~~~~----------~~~~--~-------------~~-----------~~~~~~s~f~-~e~~~~~~~l~~~~ 622 (792)
++| |||.+..- ++-- + .+ .+..+-..++ ++.+|++.+-+...
T Consensus 493 ~i~-~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~ 571 (1321)
T 4f4c_A 493 NVA-VVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVR 571 (1321)
T ss_dssp HEE-EECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTT
T ss_pred ccc-ccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHcc
Confidence 333 56554321 1100 0 00 0011112333 34555665555679
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 623 SQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 623 ~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+++++|||||+++.|+.....+ ...++.+.+ +.|+|++||.+..+.
T Consensus 572 ~~~IliLDE~tSaLD~~te~~i-~~~l~~~~~---~~T~iiiaHrls~i~ 617 (1321)
T 4f4c_A 572 NPKILLLDEATSALDAESEGIV-QQALDKAAK---GRTTIIIAHRLSTIR 617 (1321)
T ss_dssp CCSEEEEESTTTTSCTTTHHHH-HHHHHHHHT---TSEEEEECSCTTTTT
T ss_pred CCCEEEEecccccCCHHHHHHH-HHHHHHHhC---CCEEEEEcccHHHHH
Confidence 9999999999999999865555 445555554 579999999988654
No 77
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.81 E-value=2.1e-09 Score=120.43 Aligned_cols=117 Identities=14% Similarity=0.187 Sum_probs=73.0
Q ss_pred ceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHh---h----------cCccccCCceeeecc---c-c---------
Q 043119 545 DTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLS---H----------IGSFVPADAATVGLT---D-S--------- 597 (792)
Q Consensus 545 ~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~la---q----------~g~~vpa~~~~~~~~---~-~--------- 597 (792)
+++++.. |++++|+||||||||||+|+++++.... + .-.+||.....+... + .
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~ 209 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLT 209 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTTCSCBCB
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhhcccccc
Confidence 4666666 8999999999999999999998775321 1 112455443211100 0 0
Q ss_pred ------c------------chhhccchhHH-HHHHHHHHHH--hCCCCeE----EEEeC-CCCCCCHHHHHHHHHHHHHH
Q 043119 598 ------K------------HMTAEQSSFMI-DLHQVGMMLR--QATSQSL----CLLDE-FGKGTLTEDGIGLLGGTINY 651 (792)
Q Consensus 598 ------~------------~~~~~~s~f~~-e~~~~~~~l~--~~~~~sl----vllDE-~~~gt~~~~~~~l~~~~~~~ 651 (792)
+ .... ...++. +.++++.+.. .+.++++ +|||| |++|.|+. ......++
T Consensus 210 ~~~~~~~~~~~ll~~~gl~~~~~-~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~--~~~l~~l~-- 284 (460)
T 2npi_A 210 SGATLLHNKQPMVKNFGLERINE-NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN--LAELHHII-- 284 (460)
T ss_dssp SSCCSSCCBCCEECCCCSSSGGG-CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS--CHHHHHHH--
T ss_pred cCcchHHHHHHHHHHhCCCcccc-hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh--HHHHHHHH--
Confidence 0 0000 223443 4455666665 6789999 99999 99999997 22222222
Q ss_pred HHhCCCCcEEEEEccChh
Q 043119 652 FVTCDVPPKVLVCTHLTE 669 (792)
Q Consensus 652 l~~~~~~~~~l~~TH~~~ 669 (792)
.+. +.+++++||+++
T Consensus 285 -~~~--~~tviiVth~~~ 299 (460)
T 2npi_A 285 -EKL--NVNIMLVLCSET 299 (460)
T ss_dssp -HHT--TCCEEEEECCSS
T ss_pred -HHh--CCCEEEEEccCc
Confidence 232 457999999987
No 78
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.80 E-value=4.1e-10 Score=112.99 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=23.5
Q ss_pred CceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 539 DTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 539 ~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
..+|+|+- +.. |++++|+|||||||||++|.++++.
T Consensus 8 ~~~~~~~~--~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 8 TKPTARGQ--PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcCCCCC--CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 46888883 444 8999999999999999999998765
No 79
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.74 E-value=8.6e-09 Score=104.65 Aligned_cols=27 Identities=30% Similarity=0.308 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFL 578 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~l 578 (792)
|++++|+||||||||||+++++.....
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 789999999999999999999876543
No 80
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.71 E-value=3.4e-08 Score=102.53 Aligned_cols=112 Identities=15% Similarity=0.135 Sum_probs=64.7
Q ss_pred eccceeecCCCcEEEEEcCCCCCchhHHHHHHHHHHHhhcCc---------cccCCceeeecccccchhhccchhHHHHH
Q 043119 542 IPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGS---------FVPADAATVGLTDSKHMTAEQSSFMIDLH 612 (792)
Q Consensus 542 v~n~~~~~~~~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~---------~vpa~~~~~~~~~~~~~~~~~s~f~~e~~ 612 (792)
+.+++++ .+|++++|+|||||||||+++.++...-...-|. +++... ..++..+.......+|. .
T Consensus 16 vl~~i~i-~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~--~~~v~q~~~gl~~~~l~---~ 89 (261)
T 2eyu_A 16 KVLELCH-RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHK--KSIVNQREVGEDTKSFA---D 89 (261)
T ss_dssp HHHHGGG-CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCS--SSEEEEEEBTTTBSCHH---H
T ss_pred HHHHHhh-CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCc--ceeeeHHHhCCCHHHHH---H
Confidence 4456662 2389999999999999999999887654321231 111110 00111100111123442 2
Q ss_pred HHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhh
Q 043119 613 QVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELL 671 (792)
Q Consensus 613 ~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~ 671 (792)
.++.++. .+|+++++|||+ |+.... .+++.. +. +.+++++||+.+..
T Consensus 90 ~la~aL~--~~p~illlDEp~---D~~~~~----~~l~~~-~~--g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 90 ALRAALR--EDPDVIFVGEMR---DLETVE----TALRAA-ET--GHLVFGTLHTNTAI 136 (261)
T ss_dssp HHHHHHH--HCCSEEEESCCC---SHHHHH----HHHHHH-HT--TCEEEEEECCSSHH
T ss_pred HHHHHHh--hCCCEEEeCCCC---CHHHHH----HHHHHH-cc--CCEEEEEeCcchHH
Confidence 3444443 489999999998 665533 234433 33 56899999997753
No 81
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.71 E-value=2.7e-08 Score=125.64 Aligned_cols=145 Identities=15% Similarity=0.151 Sum_probs=90.8
Q ss_pred CcEEEecccceeeecccCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHH---------------------HHh
Q 043119 522 PLLDIQNGRHVLQEMTVDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIV---------------------FLS 579 (792)
Q Consensus 522 ~~l~i~~~~hp~~~~~~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~---------------------~la 579 (792)
+.|.+++...-+- ...+..|.+|++|+.+ |+.++|+||+||||||+++.+..+. +..
T Consensus 1075 g~I~f~nVsf~Y~-~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~ 1153 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYP-ERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRS 1153 (1321)
T ss_dssp CCEEEEEEEECCT-TSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHT
T ss_pred CeEEEEEEEEeCC-CCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHh
Confidence 3577776543221 0123468999999998 9999999999999999999885432 223
Q ss_pred hcCccccCCcee----------eec--cc-c--------------c-----------chhhccchhHHHH-HHHHHHHHh
Q 043119 580 HIGSFVPADAAT----------VGL--TD-S--------------K-----------HMTAEQSSFMIDL-HQVGMMLRQ 620 (792)
Q Consensus 580 q~g~~vpa~~~~----------~~~--~~-~--------------~-----------~~~~~~s~f~~e~-~~~~~~l~~ 620 (792)
++| +||.+..- ++. .+ + + .+..+-+.++++. |+++.+-+.
T Consensus 1154 ~i~-~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAl 1232 (1321)
T 4f4c_A 1154 QIA-IVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARAL 1232 (1321)
T ss_dssp TEE-EECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHH
T ss_pred heE-EECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHH
Confidence 333 56665321 111 00 0 0 0111123455444 444444444
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 621 ATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 621 ~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
..+++++||||++++.|+..-..|. ..++.+. .++|+|++||-+..+.
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq-~~l~~~~---~~~TvI~IAHRLsTi~ 1280 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQ-EALDRAR---EGRTCIVIAHRLNTVM 1280 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHH-HHHTTTS---SSSEEEEECSSSSTTT
T ss_pred HhCCCEEEEeCccccCCHHHHHHHH-HHHHHHc---CCCEEEEeccCHHHHH
Confidence 6899999999999999997655543 3333322 3689999999887653
No 82
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.70 E-value=5.2e-09 Score=112.55 Aligned_cols=111 Identities=15% Similarity=0.141 Sum_probs=67.7
Q ss_pred eccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccc-----hhhccchh--HHHHHH
Q 043119 542 IPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKH-----MTAEQSSF--MIDLHQ 613 (792)
Q Consensus 542 v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~-----~~~~~s~f--~~e~~~ 613 (792)
+++++++... |++++|+|||||||||+++.++.. +|.....+.+-+.+. .....+.+ ..+-++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~---------~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r 230 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEF---------IPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSA 230 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGG---------SCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHH
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCC---------CcCCCcEEEECCeeccccccchhEEEEEeCCChhHH
Confidence 5677777777 899999999999999999987543 232333333222110 00111111 122334
Q ss_pred HHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhh
Q 043119 614 VGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELL 671 (792)
Q Consensus 614 ~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~ 671 (792)
.+.+.....+|+++|+|||++. + + ...++.+.. + +.+++++||..+..
T Consensus 231 ~~la~aL~~~p~ilildE~~~~----e---~-~~~l~~~~~-g-~~tvi~t~H~~~~~ 278 (330)
T 2pt7_A 231 DCLKSCLRMRPDRIILGELRSS----E---A-YDFYNVLCS-G-HKGTLTTLHAGSSE 278 (330)
T ss_dssp HHHHHHTTSCCSEEEECCCCST----H---H-HHHHHHHHT-T-CCCEEEEEECSSHH
T ss_pred HHHHHHhhhCCCEEEEcCCChH----H---H-HHHHHHHhc-C-CCEEEEEEcccHHH
Confidence 4444444689999999999871 2 2 335555543 2 35689999998754
No 83
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.67 E-value=2.4e-08 Score=104.95 Aligned_cols=116 Identities=15% Similarity=0.206 Sum_probs=63.0
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHh----------h-cCccccCCcee---------eec-cc-------------c
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLS----------H-IGSFVPADAAT---------VGL-TD-------------S 597 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~la----------q-~g~~vpa~~~~---------~~~-~~-------------~ 597 (792)
|++++|+||||+|||||+++++....-+ + ...|+..+... ++. ++ .
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~l~l~ 109 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGLLIQ 109 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHHEEEC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCceEEe
Confidence 8899999999999999999998754321 0 01133322211 000 00 0
Q ss_pred cchhhccchhHHHHHHHHHHHHhCCCCeEEEEeCCCC--CCCHHHH---HHHHHHHHHHHHhCCCCcEEEEEccChhhh
Q 043119 598 KHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGK--GTLTEDG---IGLLGGTINYFVTCDVPPKVLVCTHLTELL 671 (792)
Q Consensus 598 ~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~~~--gt~~~~~---~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~ 671 (792)
+........++.++.+. +...+.++++||+|||++ +.|+.+. ..+. ..+..+++. .++++|++||.....
T Consensus 110 ~~~~~~~~~ls~g~~~~--i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~-~~L~~l~~~-~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 110 PLIGSLPNIMAPEWFDG--LKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVI-GRMEAIAAD-TGCSIVFLHHASKGA 184 (279)
T ss_dssp CCTTSCCCTTSHHHHHH--HHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHH-HHHHHHHHH-HCCEEEEEEEC----
T ss_pred ecCCCCcccCCHHHHHH--HHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHH-HHHHHHHHH-cCCEEEEEecCCCcc
Confidence 00000112222333222 223345789999999999 8876433 4443 344455432 268999999998764
No 84
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.65 E-value=3.8e-08 Score=99.90 Aligned_cols=114 Identities=11% Similarity=0.047 Sum_probs=61.8
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC-ccccCCce---------eee------------cccc--cc-----hhh
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIG-SFVPADAA---------TVG------------LTDS--KH-----MTA 602 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g-~~vpa~~~---------~~~------------~~~~--~~-----~~~ 602 (792)
|++++|+||||+|||||+++++......... .|+..+.. .++ .++. .. ...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQWSLV 102 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CTTBCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCceeeec
Confidence 7899999999999999999998665432111 12211110 000 0010 00 000
Q ss_pred ccchhHHHHHHHHHHHHhCCCCe--EEEEeCCCCCC--CHHHHHHHHHHHHHHHHhCCCCcEEEEEccChh
Q 043119 603 EQSSFMIDLHQVGMMLRQATSQS--LCLLDEFGKGT--LTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTE 669 (792)
Q Consensus 603 ~~s~f~~e~~~~~~~l~~~~~~s--lvllDE~~~gt--~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~ 669 (792)
..| ..++.+....+....+++ ++++|||+.+. |+.....+.. .+..+++. .++++|++||+..
T Consensus 103 ~~~--~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~-~l~~~~~~-~~~~vi~~~h~~~ 169 (235)
T 2w0m_A 103 NLT--PEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISY-YLKRVLNK-WNFTIYATSQYAI 169 (235)
T ss_dssp SCC--HHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHH-HHHHHHHH-TTEEEEEEEC---
T ss_pred CCC--HHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHH-HHHHHHHh-CCCeEEEEeccCc
Confidence 001 123322222222224677 99999999776 8876666654 44444432 2689999999983
No 85
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.64 E-value=4.2e-08 Score=103.99 Aligned_cols=124 Identities=17% Similarity=0.160 Sum_probs=70.7
Q ss_pred eccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC--c-cccCCce------e-------ee--cc-------
Q 043119 542 IPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIG--S-FVPADAA------T-------VG--LT------- 595 (792)
Q Consensus 542 v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g--~-~vpa~~~------~-------~~--~~------- 595 (792)
+.++++++.. |++++|+||||+|||||+++++......+ | . ++..+.. . .. ..
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~ 102 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREI 102 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCC
Confidence 3456777766 99999999999999999999988765432 2 1 2211100 0 00 00
Q ss_pred -c-c------c------c--hhhc-cchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCC------H-HHHHHHHHHHHHH
Q 043119 596 -D-S------K------H--MTAE-QSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTL------T-EDGIGLLGGTINY 651 (792)
Q Consensus 596 -~-~------~------~--~~~~-~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~------~-~~~~~l~~~~~~~ 651 (792)
+ . + . +... ...-..++++...++..+.++++||+|||+...+ . .....+. ..++.
T Consensus 103 ~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~-~~L~~ 181 (296)
T 1cr0_A 103 IENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLM-TKLKG 181 (296)
T ss_dssp HHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHH-HHHHH
Confidence 0 0 0 0 0000 0122345555555655678999999999999432 2 2223343 34555
Q ss_pred HHhCCCCcEEEEEccCh
Q 043119 652 FVTCDVPPKVLVCTHLT 668 (792)
Q Consensus 652 l~~~~~~~~~l~~TH~~ 668 (792)
+++. .++++|++||+.
T Consensus 182 la~~-~~~~vi~vsh~~ 197 (296)
T 1cr0_A 182 FAKS-TGVVLVVICHLK 197 (296)
T ss_dssp HHHH-HCCEEEEEEECC
T ss_pred HHHH-hCCeEEEEEecC
Confidence 5442 267999999995
No 86
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.62 E-value=7.2e-08 Score=91.13 Aligned_cols=86 Identities=16% Similarity=0.144 Sum_probs=56.7
Q ss_pred CCcEEEEEcCCCCCchhHHHHHHHHHHHhhcCc---cccCCceeeecccccchhhccchhHHHHHHHHHHHHhCCCCeEE
Q 043119 551 DGRINIITGPNYSGKSIYIKQVALIVFLSHIGS---FVPADAATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQATSQSLC 627 (792)
Q Consensus 551 ~~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~---~vpa~~~~~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~~~~slv 627 (792)
.++.++|+||||+||||+++.++..... .|. |+++.. .... ....+++++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~g~~~~~~~~~~---------~~~~----------------~~~~~~~lL 87 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE--AGKNAAYIDAAS---------MPLT----------------DAAFEAEYL 87 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT--TTCCEEEEETTT---------SCCC----------------GGGGGCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEcHHH---------hhHH----------------HHHhCCCEE
Confidence 4789999999999999999999876543 231 222111 1100 113468999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcE-EEEEccC
Q 043119 628 LLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPK-VLVCTHL 667 (792)
Q Consensus 628 llDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~-~l~~TH~ 667 (792)
++|||+...+. +...+ ..+++.+.+. +.+ +|++||.
T Consensus 88 ilDE~~~~~~~-~~~~l-~~li~~~~~~--g~~~iiits~~ 124 (149)
T 2kjq_A 88 AVDQVEKLGNE-EQALL-FSIFNRFRNS--GKGFLLLGSEY 124 (149)
T ss_dssp EEESTTCCCSH-HHHHH-HHHHHHHHHH--TCCEEEEEESS
T ss_pred EEeCccccChH-HHHHH-HHHHHHHHHc--CCcEEEEECCC
Confidence 99999985443 44444 5677777765 344 7888885
No 87
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.61 E-value=2.3e-09 Score=118.02 Aligned_cols=130 Identities=18% Similarity=0.043 Sum_probs=78.3
Q ss_pred ceeccceeecCC-Cc--------------------EEEEEcCCCCCchhHHHHHHHHHHHhhc-----C------ccccC
Q 043119 540 TFIPNDTRIDND-GR--------------------INIITGPNYSGKSIYIKQVALIVFLSHI-----G------SFVPA 587 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~--------------------~~~ltGpN~~GKSt~lk~i~~~~~laq~-----g------~~vpa 587 (792)
..+.++++++.. |+ +++|+||||||||||+|+++++.-.... | .++|.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 456677888776 77 9999999999999999998874322110 0 12222
Q ss_pred Cc--eeeeccc------cc-----c-----hhh-----ccchh--HHHHHHHHHHHHh--------CCCCeEEEEeCCCC
Q 043119 588 DA--ATVGLTD------SK-----H-----MTA-----EQSSF--MIDLHQVGMMLRQ--------ATSQSLCLLDEFGK 634 (792)
Q Consensus 588 ~~--~~~~~~~------~~-----~-----~~~-----~~s~f--~~e~~~~~~~l~~--------~~~~slvllDE~~~ 634 (792)
.. ..+.+.| .+ . +.. ..|.. +.....++.++.. .++++++++|||++
T Consensus 116 ~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPts 195 (413)
T 1tq4_A 116 HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADG 195 (413)
T ss_dssp CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTT
T ss_pred ccccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccc
Confidence 11 0111111 00 0 000 02222 4444555666654 24789999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH-----hCC--CCcEEEEEccChhh
Q 043119 635 GTLTEDGIGLLGGTINYFV-----TCD--VPPKVLVCTHLTEL 670 (792)
Q Consensus 635 gt~~~~~~~l~~~~~~~l~-----~~~--~~~~~l~~TH~~~l 670 (792)
|.|+.....+.. .++.+. +.+ ...+++++||+.+-
T Consensus 196 gLD~~~~~~l~~-~l~~l~~~~l~~~g~~~~~iiliSsh~l~~ 237 (413)
T 1tq4_A 196 EPQTFDKEKVLQ-DIRLNCVNTFRENGIAEPPIFLLSNKNVCH 237 (413)
T ss_dssp CCTTCCHHHHHH-HHHHHHHHHHHHTTCSSCCEEECCTTCTTS
T ss_pred cCCHHHHHHHHH-HHHHHHHHHHHhcCCCCCcEEEEecCcCCc
Confidence 999998888754 455553 221 23568899998763
No 88
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.58 E-value=8.8e-08 Score=96.37 Aligned_cols=114 Identities=18% Similarity=0.255 Sum_probs=63.1
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCce--e--e-------eccccc----chhhccchhHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAA--T--V-------GLTDSK----HMTAEQSSFMIDLHQVGM 616 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~--~--~-------~~~~~~----~~~~~~s~f~~e~~~~~~ 616 (792)
|++++|+||||+|||||+++++. ....-..|+..+.. . + ++...+ ......+......+.++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGS 97 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHHHHHHH
Confidence 88999999999999999999987 11111223333320 0 0 000000 000112333222223444
Q ss_pred HHHhCC-CCeEEEEeCCCCCCCHHHH--------HHHHHHHHHHHHhCCCCcEEEEEccChh
Q 043119 617 MLRQAT-SQSLCLLDEFGKGTLTEDG--------IGLLGGTINYFVTCDVPPKVLVCTHLTE 669 (792)
Q Consensus 617 ~l~~~~-~~slvllDE~~~gt~~~~~--------~~l~~~~~~~l~~~~~~~~~l~~TH~~~ 669 (792)
+...+. ++++|++|||+.+.++... ..+.. .+..+++. .++++|+++|...
T Consensus 98 ~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~-~L~~l~~~-~~~~vi~~~h~~~ 157 (220)
T 2cvh_A 98 LKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQ-VLLWIARK-HNIPVIVINQVHF 157 (220)
T ss_dssp HHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHH-HHHHHHHH-HTCCEEEEECSSS
T ss_pred HHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHH-HHHHHHHH-cCCEEEEEeeEEE
Confidence 334444 4899999999999987421 22322 24444432 1568999999865
No 89
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.54 E-value=1.9e-07 Score=101.14 Aligned_cols=107 Identities=16% Similarity=0.173 Sum_probs=59.9
Q ss_pred CCcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccc----cCCcee---eecccccchhhccchhHHHHHHHHHHHHhCCC
Q 043119 551 DGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFV----PADAAT---VGLTDSKHMTAEQSSFMIDLHQVGMMLRQATS 623 (792)
Q Consensus 551 ~~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~v----pa~~~~---~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~~~ 623 (792)
++.+++|+|||||||||+|++++...-...-|..+ |.+... .+.+.........-+|.. .++.+| ..+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~---~La~aL--~~~ 196 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSE---ALRSAL--RED 196 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHH---HHHHHT--TSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHH---HHHHHh--hhC
Confidence 36699999999999999999987655432222111 111100 001111111111123332 333333 589
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 624 QSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 624 ~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
|+++++|||+ |+.. +..+++ +.+. |.++|++||..+.+.
T Consensus 197 PdvillDEp~---d~e~----~~~~~~-~~~~--G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 197 PDIILVGEMR---DLET----IRLALT-AAET--GHLVFGTLHTTSAAK 235 (356)
T ss_dssp CSEEEESCCC---SHHH----HHHHHH-HHHT--TCEEEEEESCSSHHH
T ss_pred cCEEecCCCC---CHHH----HHHHHH-HHhc--CCEEEEEEccChHHH
Confidence 9999999997 4322 122233 3444 568999999987754
No 90
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.49 E-value=1.5e-07 Score=108.01 Aligned_cols=128 Identities=14% Similarity=0.131 Sum_probs=74.5
Q ss_pred ceeccceee-cCC-CcEEEEEcCCCCCchhHHHHHH--HHHHHhhcCccccCCc---------eeeeccccc--------
Q 043119 540 TFIPNDTRI-DND-GRINIITGPNYSGKSIYIKQVA--LIVFLSHIGSFVPADA---------ATVGLTDSK-------- 598 (792)
Q Consensus 540 ~~v~n~~~~-~~~-~~~~~ltGpN~~GKSt~lk~i~--~~~~laq~g~~vpa~~---------~~~~~~~~~-------- 598 (792)
..+.+++++ +.. |++++|+||||||||||+++++ ++.-...-..++..+. ..++++..+
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~ 104 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLF 104 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEE
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEE
Confidence 345678888 666 9999999999999999999953 3332222122222111 011111100
Q ss_pred --------chhhccchhHHH--HHHHHHHHHhCCCCeEEEEeCCCCC-----CCHHHHHHHHHHHHHHHHhCCCCcEEEE
Q 043119 599 --------HMTAEQSSFMID--LHQVGMMLRQATSQSLCLLDEFGKG-----TLTEDGIGLLGGTINYFVTCDVPPKVLV 663 (792)
Q Consensus 599 --------~~~~~~s~f~~e--~~~~~~~l~~~~~~slvllDE~~~g-----t~~~~~~~l~~~~~~~l~~~~~~~~~l~ 663 (792)
....-...+..+ +.+....+. ..++.+|+||||+.. .|+.....+ ..+++.+.+. +.++|+
T Consensus 105 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS-~g~~~~lilDe~t~~~~~~~lD~~~~~~l-~~ll~~l~~~--g~tvl~ 180 (525)
T 1tf7_A 105 ILDASPDPEGQEVVGGFDLSALIERINYAIQ-KYRARRVSIDSVTSVFQQYDASSVVRREL-FRLVARLKQI--GATTVM 180 (525)
T ss_dssp EEECCCCSSCCSCCSSHHHHHHHHHHHHHHH-HHTCSEEEEECSTTTSTTTCCHHHHHHHH-HHHHHHHHHH--TCEEEE
T ss_pred EEecCcccchhhhhcccCHHHHHHHHHHHHH-HcCCCEEEECCHHHHHHhcCCHHHHHHHH-HHHHHHHHHC--CCEEEE
Confidence 000001122111 122222222 247899999999874 466666666 5688888775 689999
Q ss_pred EccChhhh
Q 043119 664 CTHLTELL 671 (792)
Q Consensus 664 ~TH~~~l~ 671 (792)
+||+.+.+
T Consensus 181 itH~~~~~ 188 (525)
T 1tf7_A 181 TTERIEEY 188 (525)
T ss_dssp EEECSSSS
T ss_pred EecCCCCc
Confidence 99998763
No 91
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.43 E-value=2.8e-07 Score=97.65 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=26.0
Q ss_pred eeecCC-CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 546 TRIDND-GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 546 ~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
++++.. |++++|+|||||||||+++.++...
T Consensus 93 l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 93 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 444444 8899999999999999999998765
No 92
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.37 E-value=4.6e-07 Score=103.85 Aligned_cols=111 Identities=14% Similarity=-0.007 Sum_probs=71.7
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCc---cc-cCCcee--------eecccc--------cchhhccchhH-HH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGS---FV-PADAAT--------VGLTDS--------KHMTAEQSSFM-ID 610 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~---~v-pa~~~~--------~~~~~~--------~~~~~~~s~f~-~e 610 (792)
|.+++|+||||+|||||+++++..... + |. |+ +.+... +++--. .........++ .+
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~-~-G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~ 358 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACA-N-KERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLED 358 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHT-T-TCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHh-C-CCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHH
Confidence 889999999999999999999876543 2 32 22 322110 110000 00000111223 34
Q ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCCHH-----HHHHHHHHHHHHHHhCCCCcEEEEEccCh
Q 043119 611 LHQVGMMLRQATSQSLCLLDEFGKGTLTE-----DGIGLLGGTINYFVTCDVPPKVLVCTHLT 668 (792)
Q Consensus 611 ~~~~~~~l~~~~~~slvllDE~~~gt~~~-----~~~~l~~~~~~~l~~~~~~~~~l~~TH~~ 668 (792)
.+++..+.....+++++|+| |++|.|+. ....+ ..++..+.+. +.++|++||+.
T Consensus 359 ~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i-~~ll~~l~~~--g~tvilvsh~~ 417 (525)
T 1tf7_A 359 HLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFV-IGVTGYAKQE--EITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHH-HHHHHHHHHT--TCEEEEEEECS
T ss_pred HHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHH-HHHHHHHHhC--CCEEEEEECcc
Confidence 45555555557899999999 99999987 55555 5677887765 67999999998
No 93
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.33 E-value=1.6e-06 Score=89.09 Aligned_cols=39 Identities=13% Similarity=0.071 Sum_probs=23.7
Q ss_pred cCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 538 VDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 538 ~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
.+..+.++++|+.. +.+++|+|||||||||++|.++...
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567889999988 8999999999999999999987653
No 94
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.32 E-value=5.8e-07 Score=97.12 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=26.7
Q ss_pred ceeecCC-CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 545 DTRIDND-GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 545 ~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
+++++.. +++++|+|||||||||+++.++...
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 3455555 8999999999999999999998765
No 95
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.32 E-value=4.8e-07 Score=105.26 Aligned_cols=49 Identities=12% Similarity=0.121 Sum_probs=36.0
Q ss_pred CCCeEEEEeCC------CCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhh
Q 043119 622 TSQSLCLLDEF------GKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELL 671 (792)
Q Consensus 622 ~~~slvllDE~------~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~ 671 (792)
..|.|+|+||| ++|.|+.....+. .++..+.....+.+++++||+.+++
T Consensus 145 ~~p~LlLlDePGi~~~~t~~LD~~~~~~i~-~li~~~l~~~~~iil~vvt~~~d~a 199 (608)
T 3szr_A 145 DVPDLTLIDLPGITRVAVGNQPADIGYKIK-TLIKKYIQRQETISLVVVPSNVDIA 199 (608)
T ss_dssp SSCCEEEEECCC------CCSSCSHHHHHH-HHHHHHTTSSSCCEEEEEESSSCTT
T ss_pred CCCceeEeeCCCccccccCCCCHHHHHHHH-HHHHHHHhcCCCCceEEEeccchhc
Confidence 35789999999 8899987776764 5666655443467788999998754
No 96
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.32 E-value=6.6e-07 Score=91.36 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFL 578 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~l 578 (792)
|++++|+||||+||||++++++..+.+
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~ 50 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQL 50 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhC
Confidence 789999999999999999999876544
No 97
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.30 E-value=5.3e-07 Score=97.61 Aligned_cols=117 Identities=16% Similarity=0.162 Sum_probs=62.2
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHh-hc----C--ccccCCce----eeecc------cc----cchhhccchhHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLS-HI----G--SFVPADAA----TVGLT------DS----KHMTAEQSSFMID 610 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~la-q~----g--~~vpa~~~----~~~~~------~~----~~~~~~~s~f~~e 610 (792)
|+++.|+||||||||||+++++...... .. | .|+..+.. .+..+ +. +.+.-....-..+
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~~~~~ 210 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNH 210 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECCSHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecCChHH
Confidence 8999999999999999999998765221 11 2 34433321 01000 00 0000000000112
Q ss_pred HHH-H---HHHHHhC----CCCeEEEEeCCCCCCCHHH------------HHHHHHHHHHHHHhCCCCcEEEEEccChhh
Q 043119 611 LHQ-V---GMMLRQA----TSQSLCLLDEFGKGTLTED------------GIGLLGGTINYFVTCDVPPKVLVCTHLTEL 670 (792)
Q Consensus 611 ~~~-~---~~~l~~~----~~~slvllDE~~~gt~~~~------------~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l 670 (792)
..+ + ...+... .++++||+|||+++.|+.. ...+. ..+..+++. .++++|+++|...-
T Consensus 211 ~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l-~~L~~la~~-~~~tvii~~h~~~~ 288 (349)
T 1pzn_A 211 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHL-ADLHRLANL-YDIAVFVTNQVQAR 288 (349)
T ss_dssp HHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHH-HHHHHHHHH-TTCEEEEEEECC--
T ss_pred HHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHH-HHHHHHHHH-cCcEEEEEcccccc
Confidence 222 2 2222222 6899999999999998741 12222 223334332 26799999998653
No 98
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.28 E-value=4e-07 Score=89.54 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVF 577 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~ 577 (792)
|++++|+|||||||||+++.++...-
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 46899999999999999999988764
No 99
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.25 E-value=3.4e-06 Score=87.85 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCchhHHHHHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVALIVFL 578 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~~~~l 578 (792)
.++|+||||||||||+|++++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999887643
No 100
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.23 E-value=2.1e-06 Score=86.53 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
|++++|+|||||||||++|.++...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 8899999999999999999987764
No 101
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.19 E-value=3e-06 Score=92.49 Aligned_cols=104 Identities=15% Similarity=0.161 Sum_probs=58.9
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccc----cCCc---eeeecccccchhhccchhHHHHHHHHHHHHhCCCC
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFV----PADA---ATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQATSQ 624 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~v----pa~~---~~~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~~~~ 624 (792)
|.+++|+|||||||||+++.++...-...-|..+ |.+. ..++++...........|.. .++.++ ..+|
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~---~l~~~L--~~~p 210 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFAD---ALRAAL--REDP 210 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHH---HHHHHT--TSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHH---HHHHHh--hhCc
Confidence 7899999999999999999988765432122211 1110 01111111111112234532 233333 3589
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhh
Q 043119 625 SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTEL 670 (792)
Q Consensus 625 slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l 670 (792)
+++++|||+ |+... ..+++.. .. +.+++.++|..+.
T Consensus 211 d~illdE~~---d~e~~----~~~l~~~-~~--g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 211 DVIFVGEMR---DLETV----ETALRAA-ET--GHLVFGTLHTNTA 246 (372)
T ss_dssp SEEEESCCC---SHHHH----HHHHHHH-TT--TCEEEECCCCCSH
T ss_pred CEEEECCCC---CHHHH----HHHHHHH-hc--CCEEEEEECcchH
Confidence 999999997 55432 2234433 33 5688999998764
No 102
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.99 E-value=1.7e-06 Score=93.44 Aligned_cols=36 Identities=14% Similarity=-0.009 Sum_probs=30.6
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
..+.+++ +... |++++|+||||+||||++|+|+...
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456677 7777 9999999999999999999998764
No 103
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.97 E-value=1.3e-05 Score=86.86 Aligned_cols=45 Identities=9% Similarity=0.121 Sum_probs=30.3
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhh
Q 043119 621 ATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTEL 670 (792)
Q Consensus 621 ~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l 670 (792)
..++.++|+||+.+ .|+....++. .+++.. ..++++|++||+.+-
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~-~~le~~---~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALR-RTMEKY---SKNIRLIMVCDSMSP 176 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHH-HHHHHS---TTTEEEEEEESCSCS
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHH-HHHHhh---cCCCEEEEEeCCHHH
Confidence 34788999999999 8876555443 334332 235789999998753
No 104
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.91 E-value=2.6e-06 Score=81.11 Aligned_cols=37 Identities=11% Similarity=0.155 Sum_probs=32.4
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
..+.++++|+.. |++++|+||||||||||+|.++...
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 356778888887 9999999999999999999998765
No 105
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=97.90 E-value=2.1e-05 Score=73.79 Aligned_cols=49 Identities=27% Similarity=0.247 Sum_probs=39.4
Q ss_pred hCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhh
Q 043119 620 QATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELL 671 (792)
Q Consensus 620 ~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~ 671 (792)
.+.+|+++|+|||++|.|+.....+. .++..+.+. +.++|++||+.++.
T Consensus 78 l~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~--~~tiiivsH~~~~~ 126 (148)
T 1f2t_B 78 LAGEISLLILDEPTPYLDEERRRKLI-TIMERYLKK--IPQVILVSHDEELK 126 (148)
T ss_dssp HHSSCSEEEEESCSCTTCHHHHHHHH-HHHHHTGGG--SSEEEEEESCGGGG
T ss_pred HcCCCCEEEEECCCccCCHHHHHHHH-HHHHHHHcc--CCEEEEEEChHHHH
Confidence 35789999999999999998888775 466666543 57899999998654
No 106
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.88 E-value=4.3e-05 Score=77.88 Aligned_cols=47 Identities=2% Similarity=-0.094 Sum_probs=32.3
Q ss_pred CCCeEEEEeCCCCCC--CHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhh
Q 043119 622 TSQSLCLLDEFGKGT--LTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTEL 670 (792)
Q Consensus 622 ~~~slvllDE~~~gt--~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l 670 (792)
.+++++++|+++... |+.........+.+.+.+. ++++++++|....
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~--~~~vi~~~h~~~~ 175 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGT--GCTSIFVSQVSVG 175 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHT--TCEEEEEEECC--
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHC--CCeEEEEecCCCC
Confidence 357899999999876 4444455555566555554 6799999998754
No 107
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.84 E-value=1.6e-05 Score=87.15 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFL 578 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~l 578 (792)
|++++|+||||+|||||+++++....+
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~ 204 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQI 204 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhcc
Confidence 789999999999999999988765543
No 108
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.83 E-value=2.9e-05 Score=82.19 Aligned_cols=38 Identities=11% Similarity=-0.165 Sum_probs=27.7
Q ss_pred EEEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChh
Q 043119 626 LCLLDEFGK-GTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTE 669 (792)
Q Consensus 626 lvllDE~~~-gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~ 669 (792)
++++|||++ |.|+.+. .+++.+... .+.++++++||+.
T Consensus 130 ll~ldePt~~~Ld~~~~-----~~l~~l~~~-~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 130 CFYFISPFGHGLKPLDV-----AFMKAIHNK-VNIVPVIAKADTL 168 (301)
T ss_dssp EEEEECSSSSSCCHHHH-----HHHHHHTTT-SCEEEEECCGGGS
T ss_pred eeeeecCcccCCCHHHH-----HHHHHHHhc-CCEEEEEEeCCCC
Confidence 999999987 5999772 355666543 3567888899963
No 109
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.78 E-value=2.5e-05 Score=82.62 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
+++++|+|||||||||+++.++...
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 7899999999999999999998765
No 110
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.77 E-value=9.7e-06 Score=90.18 Aligned_cols=36 Identities=17% Similarity=0.073 Sum_probs=31.3
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
..+.+++ +... |++++|+||||+||||+|++|+...
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3467788 8887 9999999999999999999998764
No 111
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.77 E-value=6.3e-05 Score=80.35 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
+.+++|+|||||||||+++.++...
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998764
No 112
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.75 E-value=7.6e-05 Score=80.53 Aligned_cols=114 Identities=16% Similarity=0.231 Sum_probs=62.4
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHh-hcCccccCCcee-------eecccccchhhccchhHHHHHHHHHHHHhCCC
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLS-HIGSFVPADAAT-------VGLTDSKHMTAEQSSFMIDLHQVGMMLRQATS 623 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~la-q~g~~vpa~~~~-------~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~~~ 623 (792)
|++++|.||||+|||||+.+++...... ....|+..+... +++...+.......+ ..+..++...+.....
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~-~e~~l~~~~~l~~~~~ 139 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDT-GEQALEIADMLVRSGA 139 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSS-HHHHHHHHHHHHTTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCC-HHHHHHHHHHHHhcCC
Confidence 8899999999999999999887655432 112344333211 110000000001111 2334444444434456
Q ss_pred CeEEEEeCCCCCCCHHH-------------HHHHHHHHHHHH----HhCCCCcEEEEEccChh
Q 043119 624 QSLCLLDEFGKGTLTED-------------GIGLLGGTINYF----VTCDVPPKVLVCTHLTE 669 (792)
Q Consensus 624 ~slvllDE~~~gt~~~~-------------~~~l~~~~~~~l----~~~~~~~~~l~~TH~~~ 669 (792)
+++|++||++......+ ...+ ...+..| .+. ++++|+++|...
T Consensus 140 ~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~-~~~l~~L~~~a~~~--~~tVI~inh~~~ 199 (349)
T 2zr9_A 140 LDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLM-SQALRKMTGALNNS--GTTAIFINELRE 199 (349)
T ss_dssp CSEEEEECGGGCCCHHHHTTC----CCCHHHHHH-HHHHHHHHHHHHHH--TCEEEEEEECC-
T ss_pred CCEEEEcChHhhcchhhhccccccchhhHHHHHH-HHHHHHHHHHHHHh--CCEEEEEecccc
Confidence 89999999999873111 1112 2233333 343 679999999764
No 113
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.69 E-value=1.3e-05 Score=80.59 Aligned_cols=36 Identities=22% Similarity=0.065 Sum_probs=23.4
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
.-.++++|+.. |++++|+|||||||||++|.++...
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34568888888 9999999999999999999998755
No 114
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.65 E-value=4.8e-05 Score=84.74 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=28.4
Q ss_pred cceeecCC-CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 544 NDTRIDND-GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 544 n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
++++|+.. |.+++|+|||||||||+++.++...
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 46667666 8999999999999999999998765
No 115
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.65 E-value=6.5e-06 Score=90.85 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=24.9
Q ss_pred ceeccceeecCCCcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 540 TFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 540 ~~v~n~~~~~~~~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
..+.++++|. ++|+||||+|||||++++++..
T Consensus 24 ~~vl~~vsf~-----I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 24 KSVKRGFEFT-----LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp TTCC-CCCEE-----EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEecCCCEE-----EEEECCCCCcHHHHHHHHhCCC
Confidence 4566777775 3999999999999999987554
No 116
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.63 E-value=1.4e-05 Score=87.04 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
++.++|+||||||||||+|.++++.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999998764
No 117
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.60 E-value=9.7e-05 Score=77.82 Aligned_cols=115 Identities=12% Similarity=0.150 Sum_probs=59.1
Q ss_pred CCcEEEEEcCCCCCchhHHHHHHHHHHHhhcC---ccccCCceeeeccc-ccchh--hccc---hhHHHHHHHHHHHHhC
Q 043119 551 DGRINIITGPNYSGKSIYIKQVALIVFLSHIG---SFVPADAATVGLTD-SKHMT--AEQS---SFMIDLHQVGMMLRQA 621 (792)
Q Consensus 551 ~~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g---~~vpa~~~~~~~~~-~~~~~--~~~s---~f~~e~~~~~~~l~~~ 621 (792)
.+++++++||||+||||+++.++..... .-| .+++++.......+ -.... .+.. ... -.++..++..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~-~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~--~~~l~~al~~~ 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML-EKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYT--KEEFQQAKELF 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSS--HHHHHHHHHHG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCC--HHHHHHHHHHh
Confidence 4789999999999999999998865543 134 23333322111111 00000 0000 000 12234444456
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhC-CCCcEEEE-EccChhhh
Q 043119 622 TSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTC-DVPPKVLV-CTHLTELL 671 (792)
Q Consensus 622 ~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~-~~~~~~l~-~TH~~~l~ 671 (792)
.++++||+| +.|.++.+...+ ..+.+.+... ..+..+++ +||..+.+
T Consensus 181 ~~~dlvIiD--T~G~~~~~~~~~-~el~~~l~~~~~~~~~lVl~at~~~~~~ 229 (296)
T 2px0_A 181 SEYDHVFVD--TAGRNFKDPQYI-DELKETIPFESSIQSFLVLSATAKYEDM 229 (296)
T ss_dssp GGSSEEEEE--CCCCCTTSHHHH-HHHHHHSCCCTTEEEEEEEETTBCHHHH
T ss_pred cCCCEEEEe--CCCCChhhHHHH-HHHHHHHhhcCCCeEEEEEECCCCHHHH
Confidence 788999999 667777654333 3343333211 11223344 58986544
No 118
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.58 E-value=1.8e-05 Score=83.40 Aligned_cols=47 Identities=15% Similarity=0.048 Sum_probs=37.0
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCC
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPAD 588 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~ 588 (792)
.+.++++++.+ |++++|+||||||||||+|.++.+. -+.+-.++|..
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~~v~q~ 161 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLSFANHK 161 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-TCEEECGGGTT
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-CceEEEEecCc
Confidence 36778999988 9999999999999999999998876 33333345543
No 119
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.50 E-value=3.9e-05 Score=83.31 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=27.7
Q ss_pred ccceeecCC-CcEEEEEcCCCCCchhHHHHHHH
Q 043119 543 PNDTRIDND-GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 543 ~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
++++++... |++++|+|||||||||+++.++.
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHT
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHh
Confidence 467777776 89999999999999999998764
No 120
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.46 E-value=3.3e-05 Score=78.28 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=20.0
Q ss_pred eeccceeecCC-CcEEEEEcCCCCCchhHHHHHH-HHH
Q 043119 541 FIPNDTRIDND-GRINIITGPNYSGKSIYIKQVA-LIV 576 (792)
Q Consensus 541 ~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~-~~~ 576 (792)
-...+++|+.. |++++|+|||||||||++|.++ ...
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34456677766 8999999999999999999987 653
No 121
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.46 E-value=5.3e-05 Score=74.95 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
|++++|+|||||||||++|.++..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 789999999999999999998765
No 122
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.46 E-value=0.00027 Score=78.83 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=57.5
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhccchhHHHHHH--HHHHHHhCC-CCeEEE
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDLHQ--VGMMLRQAT-SQSLCL 628 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~~s~f~~e~~~--~~~~l~~~~-~~slvl 628 (792)
...++|+||+|+||||+++.++....-...|..+ -.++..... ..+...+.. ......... .+++++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v-------~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vL~ 199 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRV-------MYITSEKFL---NDLVDSMKEGKLNEFREKYRKKVDILL 199 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCE-------EEEEHHHHH---HHHHHHHHTTCHHHHHHHHTTTCSEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeE-------EEeeHHHHH---HHHHHHHHcccHHHHHHHhcCCCCEEE
Confidence 3578999999999999999988654322112111 111100000 001111100 111222224 789999
Q ss_pred EeCCCCCCCHH-HHHHHHHHHHHHHHhCCCCcEEEEEccCh
Q 043119 629 LDEFGKGTLTE-DGIGLLGGTINYFVTCDVPPKVLVCTHLT 668 (792)
Q Consensus 629 lDE~~~gt~~~-~~~~l~~~~~~~l~~~~~~~~~l~~TH~~ 668 (792)
|||+.+-.+.. ....+ ..+++.+.+. +..+|++||..
T Consensus 200 IDEi~~l~~~~~~q~~l-~~~l~~l~~~--~~~iIitt~~~ 237 (440)
T 2z4s_A 200 IDDVQFLIGKTGVQTEL-FHTFNELHDS--GKQIVICSDRE 237 (440)
T ss_dssp EECGGGGSSCHHHHHHH-HHHHHHHHTT--TCEEEEEESSC
T ss_pred EeCcccccCChHHHHHH-HHHHHHHHHC--CCeEEEEECCC
Confidence 99998776542 33334 3566666664 56788899874
No 123
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.35 E-value=0.00098 Score=71.68 Aligned_cols=113 Identities=15% Similarity=0.115 Sum_probs=59.9
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhh-cCccccCCcee-------eecccccchhhccchhHHHHHHHHHHHHhCCC
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSH-IGSFVPADAAT-------VGLTDSKHMTAEQSSFMIDLHQVGMMLRQATS 623 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq-~g~~vpa~~~~-------~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~~~ 623 (792)
|+++.|+||||+|||||+.+++....... .-.|+.++... +++...+.......+ ..++.++...+.....
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~-~e~~l~~~~~l~~~~~ 139 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDH-GEQALEIVDELVRSGV 139 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSS-HHHHHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccC-HHHHHHHHHHHhhhcC
Confidence 78999999999999999999886544311 11244333211 111100100001111 2233333333333467
Q ss_pred CeEEEEeCCCCCCCH--HH-----------HHHHHHHHH---HHHHhCCCCcEEEEEccC
Q 043119 624 QSLCLLDEFGKGTLT--ED-----------GIGLLGGTI---NYFVTCDVPPKVLVCTHL 667 (792)
Q Consensus 624 ~slvllDE~~~gt~~--~~-----------~~~l~~~~~---~~l~~~~~~~~~l~~TH~ 667 (792)
++++++|++..=... .+ ...++ .++ ..+++. .++++|++.|-
T Consensus 140 ~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la-~~L~~L~~lak~-~~~tVI~inqv 197 (356)
T 3hr8_A 140 VDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMS-QALRKIAGSVNK-SKAVVIFTNQI 197 (356)
T ss_dssp CSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHH-HHHHHHHHHHHT-SSCEEEEEEES
T ss_pred CCeEEehHhhhhcChhhhcccchhhHHHHHHHHHH-HHHHHHHHHHHh-cCCEEEEEeee
Confidence 899999998765531 11 12232 233 334443 36788998887
No 124
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.34 E-value=0.00011 Score=71.18 Aligned_cols=32 Identities=25% Similarity=0.239 Sum_probs=25.8
Q ss_pred cceeecCCCcEEEEEcCCCCCchhHHHHHHHH
Q 043119 544 NDTRIDNDGRINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 544 n~~~~~~~~~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
.+++++....+++|+|||||||||++++|..+
T Consensus 18 ~~~~~~~~~g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 18 KKVVIPFSKGFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SCEEEECCSSEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccEEEecCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 35566665349999999999999999988754
No 125
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.30 E-value=0.00069 Score=75.86 Aligned_cols=105 Identities=17% Similarity=0.173 Sum_probs=55.4
Q ss_pred EEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhccchhHHHHHHHHHHHHh--CCCCeEEEEeC
Q 043119 554 INIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQ--ATSQSLCLLDE 631 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~~s~f~~e~~~~~~~l~~--~~~~slvllDE 631 (792)
-++|+||+|+||||++|.++.- .|.++ ..+...+ ... .. +...-.++..++.. ...|++++|||
T Consensus 51 gvLL~GppGtGKT~Laraia~~-----~~~~f----~~is~~~--~~~-~~--~g~~~~~~r~lf~~A~~~~p~ILfIDE 116 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE-----ANVPF----FHISGSD--FVE-LF--VGVGAARVRDLFAQAKAHAPCIVFIDE 116 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH-----HTCCE----EEEEGGG--TTT-CC--TTHHHHHHHHHHHHHHHTCSEEEEEET
T ss_pred eEEEECCCCCCHHHHHHHHHHH-----cCCCe----eeCCHHH--HHH-HH--hcccHHHHHHHHHHHHhcCCCEEEEec
Confidence 4789999999999999998763 23211 1111111 000 00 00011222233333 25789999999
Q ss_pred CCC----------CCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEccChhhhhc
Q 043119 632 FGK----------GTLTEDGIGLLGGTINYFVT--CDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 632 ~~~----------gt~~~~~~~l~~~~~~~l~~--~~~~~~~l~~TH~~~l~~~ 673 (792)
+.. |.++.. ......++..+-. ...+..+|.+||..+.++.
T Consensus 117 id~l~~~r~~~~~g~~~~~-~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~ 169 (476)
T 2ce7_A 117 IDAVGRHRGAGLGGGHDER-EQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDP 169 (476)
T ss_dssp GGGTCCC---------CHH-HHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCG
T ss_pred hhhhhhhcccccCcCcHHH-HHHHHHHHHHHhccCCCCCEEEEEecCChhhhch
Confidence 943 333322 2233445555431 1125688899999887653
No 126
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.28 E-value=9.5e-05 Score=72.18 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
+++++|+|||||||||++|.++...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999887653
No 127
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.24 E-value=0.00052 Score=72.20 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=25.6
Q ss_pred ceeecCCCcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 545 DTRIDNDGRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 545 ~~~~~~~~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
+++++ .+++++++||||+||||+++.++...
T Consensus 92 ~i~~~-~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 92 LPVLK-DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp CCCCC-SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred eeecC-CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444 57899999999999999999998664
No 128
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.24 E-value=0.00083 Score=76.56 Aligned_cols=110 Identities=15% Similarity=0.159 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhCCCC--eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhhcCCCCCCCceeEEEE
Q 043119 610 DLHQVGMMLRQATSQ--SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTM 687 (792)
Q Consensus 610 e~~~~~~~l~~~~~~--slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~~~~~~~~~~v~~~~~ 687 (792)
|.++++.+...+.++ +++|+|||++|.|+.....+. .++..+.+ +.++|++||+++++... +.+ +.|
T Consensus 402 ~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~-~~l~~~~~---~~~vi~itH~~~~~~~~-----d~~--~~~ 470 (517)
T 4ad8_A 402 ELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVA-EQLSRLAD---TRQVLVVTHLAQIAARA-----HHH--YKV 470 (517)
T ss_dssp HHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHH-HHHHHHHH---HSEEEEECCCHHHHHHS-----SEE--EEE
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHH-HHHHHHhC---CCEEEEEecCHHHHHhC-----CEE--EEE
Confidence 344444444445666 999999999999999888885 56777765 46899999999987531 222 223
Q ss_pred EEeeccCCCCCCCceEEeEEeecCCCCCcHHHHHHHHcC--CCHHHHHHHHHHH
Q 043119 688 SVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAG--VPAEVIKRAAYVL 739 (792)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~~A~~~g--~p~~ii~~A~~~~ 739 (792)
.-.... +...- .+. ......---++|+++| +.+..++.|++++
T Consensus 471 ~~~~~~------~~~~~--~~~-~l~~~~~~~ei~~~~~g~~~~~~~~~a~~ll 515 (517)
T 4ad8_A 471 EKQVED------GRTVS--HVR-LLTGDERLEEIARMLSGNTSEAALEHARELL 515 (517)
T ss_dssp ECCEET------TEECC--EEE-ECCSHHHHHHHHHHSSSSCCHHHHHHHHHHH
T ss_pred eccccC------Cceee--eee-eCCcchHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 211000 11100 111 1122233468888875 6788888888775
No 129
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.19 E-value=0.00096 Score=68.34 Aligned_cols=105 Identities=16% Similarity=0.202 Sum_probs=54.6
Q ss_pred EEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhccchhHHHHHHHHHHHHhC--CCCeEEEEeCC
Q 043119 555 NIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQA--TSQSLCLLDEF 632 (792)
Q Consensus 555 ~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~--~~~slvllDE~ 632 (792)
++|+||||+||||++|.++... ..|. ..+ +...+.... .......+..+++.+ ..++++++||+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~---~~~~------i~~---~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~i~~~Dei 117 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA---RVPF------ITA---SGSDFVEMF--VGVGAARVRDLFETAKRHAPCIVFIDEI 117 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT---TCCE------EEE---EHHHHHHSC--TTHHHHHHHHHHHHHTTSSSEEEEEETH
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCCE------EEe---eHHHHHHHH--hhHHHHHHHHHHHHHHhcCCeEEEehhh
Confidence 8999999999999999987542 1111 111 100011000 001112344455544 35789999998
Q ss_pred CC-----CC----CHHHHHHHHHHHHHHHHh--CCCCcEEEEEccChhhhhc
Q 043119 633 GK-----GT----LTEDGIGLLGGTINYFVT--CDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 633 ~~-----gt----~~~~~~~l~~~~~~~l~~--~~~~~~~l~~TH~~~l~~~ 673 (792)
-. +. ...+.......++..+.. ......++.+|+.++..+.
T Consensus 118 d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~ 169 (254)
T 1ixz_A 118 DAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 169 (254)
T ss_dssp HHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCG
T ss_pred hhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCH
Confidence 21 11 112233333455555542 1123456678888887654
No 130
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.18 E-value=0.00066 Score=71.63 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
+++++|+||||+||||+++.++...
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHH
Confidence 7899999999999999999988654
No 131
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.17 E-value=0.00019 Score=71.39 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVF 577 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~ 577 (792)
|.+++|+||||||||||+|.++...-
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 78999999999999999999887654
No 132
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.15 E-value=0.00017 Score=71.75 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
+.+++|+|||||||||++|.++...
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988753
No 133
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.14 E-value=0.00056 Score=68.92 Aligned_cols=96 Identities=10% Similarity=-0.063 Sum_probs=52.8
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeC
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDE 631 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE 631 (792)
++.++|+||.|+||||+++.++....-. |..+ ..++........ ..++.....+.++++||
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~-------~~~~~~~~~~~~----------~~~~~~~~~~~vliiDe 112 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANEL--ERRS-------FYIPLGIHASIS----------TALLEGLEQFDLICIDD 112 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCE-------EEEEGGGGGGSC----------GGGGTTGGGSSEEEEET
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeE-------EEEEHHHHHHHH----------HHHHHhccCCCEEEEec
Confidence 5689999999999999999887544322 2111 111100010000 01112235679999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccC
Q 043119 632 FGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHL 667 (792)
Q Consensus 632 ~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~ 667 (792)
+..-............+++.+.+.+ ...+|++|+.
T Consensus 113 ~~~~~~~~~~~~~l~~~l~~~~~~~-~~~ii~~~~~ 147 (242)
T 3bos_A 113 VDAVAGHPLWEEAIFDLYNRVAEQK-RGSLIVSASA 147 (242)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHC-SCEEEEEESS
T ss_pred cccccCCHHHHHHHHHHHHHHHHcC-CCeEEEEcCC
Confidence 8765543322333345666665542 2347777764
No 134
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.13 E-value=0.0008 Score=73.28 Aligned_cols=116 Identities=10% Similarity=-0.006 Sum_probs=58.4
Q ss_pred EEEEEcCCCCCchhHHHHHHHHHHHhh-cC-ccccCCceee--eccc--ccch-----hhccchhHHHHHHHHHHHHhCC
Q 043119 554 INIITGPNYSGKSIYIKQVALIVFLSH-IG-SFVPADAATV--GLTD--SKHM-----TAEQSSFMIDLHQVGMMLRQAT 622 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~~~~laq-~g-~~vpa~~~~~--~~~~--~~~~-----~~~~s~f~~e~~~~~~~l~~~~ 622 (792)
.++|+||+|+||||+++.++....-.. .. .++.|....- .++. ...+ ..+. ....-...+...+....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~l~~~l~~~~ 124 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGL-SRDEFLALLVEHLRERD 124 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCC-CHHHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCC-CHHHHHHHHHHHHhhcC
Confidence 899999999999999998875432110 00 1222211100 0000 0000 0011 11111233444555556
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEccChhhhh
Q 043119 623 SQSLCLLDEFGKGTLTEDGIGLLGGTINYFVT-CDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 623 ~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~-~~~~~~~l~~TH~~~l~~ 672 (792)
.+.++++||+... ++.....+. .+++.+.. ...+..+|++||..++..
T Consensus 125 ~~~vlilDE~~~l-~~~~~~~L~-~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 125 LYMFLVLDDAFNL-APDILSTFI-RLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp CCEEEEEETGGGS-CHHHHHHHH-HHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred CeEEEEEECcccc-chHHHHHHH-HHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 7889999999877 433322222 22322222 002567888999986543
No 135
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.12 E-value=0.0011 Score=69.05 Aligned_cols=114 Identities=12% Similarity=0.201 Sum_probs=60.2
Q ss_pred cceeecCCCcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhccchhHHHH-HHHHHHHHhC-
Q 043119 544 NDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDL-HQVGMMLRQA- 621 (792)
Q Consensus 544 n~~~~~~~~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~~s~f~~e~-~~~~~~l~~~- 621 (792)
+++++..+. -++|+||||+||||++|+++... |. ....+. ..+.. +.+..+. ..+..+.+.+
T Consensus 37 ~~~~l~~~~-GvlL~Gp~GtGKTtLakala~~~-----~~----~~i~i~--g~~l~----~~~~~~~~~~i~~vf~~a~ 100 (274)
T 2x8a_A 37 KALGLVTPA-GVLLAGPPGCGKTLLAKAVANES-----GL----NFISVK--GPELL----NMYVGESERAVRQVFQRAK 100 (274)
T ss_dssp HHTTCCCCS-EEEEESSTTSCHHHHHHHHHHHT-----TC----EEEEEE--TTTTC----SSTTHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCC-eEEEECCCCCcHHHHHHHHHHHc-----CC----CEEEEE--cHHHH----hhhhhHHHHHHHHHHHHHH
Confidence 344455442 28999999999999999987642 21 111111 11111 1111121 2344455443
Q ss_pred -CCCeEEEEeCCCCCCCHHHH------HHHHHHHHHHHHh--CCCCcEEEEEccChhhhhc
Q 043119 622 -TSQSLCLLDEFGKGTLTEDG------IGLLGGTINYFVT--CDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 622 -~~~slvllDE~~~gt~~~~~------~~l~~~~~~~l~~--~~~~~~~l~~TH~~~l~~~ 673 (792)
..++++++||+-........ ..+....+..+.. +.....++.+|+.+++.+.
T Consensus 101 ~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~ 161 (274)
T 2x8a_A 101 NSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDP 161 (274)
T ss_dssp HTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCH
T ss_pred hcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCH
Confidence 46789999999764322110 1122334444431 1124567788999988764
No 136
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.11 E-value=0.00018 Score=71.10 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
|++++|+|||||||||++|.++...
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 6789999999999999999987654
No 137
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.09 E-value=0.00035 Score=68.83 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCchhHHHHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
..++|+||+|+||||+++.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999887544
No 138
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.09 E-value=0.00024 Score=79.38 Aligned_cols=35 Identities=20% Similarity=0.206 Sum_probs=29.3
Q ss_pred ccceeecCCCcEEEEEcCCCCCchhHHHHHHHHHH
Q 043119 543 PNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVF 577 (792)
Q Consensus 543 ~n~~~~~~~~~~~~ltGpN~~GKSt~lk~i~~~~~ 577 (792)
.++++|+...++++|+|||||||||+||+++++..
T Consensus 20 l~~vsl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 20 FFARTFDFDELVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp EEEEEEECCSSEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ccceEEEEccceEEEECCCCCcHHHHHHHHhcCCC
Confidence 34777776558999999999999999999988763
No 139
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.05 E-value=0.0004 Score=65.20 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 551 DGRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 551 ~~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
+..+.+|+|||||||||+|.+|..+.
T Consensus 22 ~~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 22 KEGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999887643
No 140
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.04 E-value=0.00023 Score=69.40 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
|++++|+|||||||||++|.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999988653
No 141
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.03 E-value=0.0011 Score=79.88 Aligned_cols=67 Identities=18% Similarity=0.152 Sum_probs=47.9
Q ss_pred ccchhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 603 EQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 603 ~~s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+|.......+++.+|..-..+.++|||||++|+|+.+...+. .+++.+.+. +.++|++||+++++.
T Consensus 464 ~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~-~~L~~L~~~--G~TvivVtHd~~~~~ 530 (916)
T 3pih_A 464 TLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLI-KTLKKLRDL--GNTVIVVEHDEEVIR 530 (916)
T ss_dssp GCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHH-HHHHHTTTT--TCEEEEECCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHH-HHHHHHHhc--CCEEEEEeCCHHHHH
Confidence 3444333333444444332344599999999999999999985 577777664 679999999998864
No 142
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.01 E-value=0.00032 Score=74.36 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVF 577 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~ 577 (792)
|.+++|+|||||||||++|.++.+.-
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhcc
Confidence 78999999999999999999987653
No 143
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.97 E-value=0.0015 Score=78.25 Aligned_cols=46 Identities=22% Similarity=0.237 Sum_probs=40.3
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 624 QSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 624 ~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
+.++|||||++|+||.+...+. .+++.|.+. |.++|++||+.+.+.
T Consensus 525 ~~llILDEPTagLdp~~~~~L~-~~L~~Lr~~--G~TVIvVeHdl~~i~ 570 (972)
T 2r6f_A 525 GVLYVLDEPSIGLHQRDNDRLI-ATLKSMRDL--GNTLIVVEHDEDTML 570 (972)
T ss_dssp SCEEEEECTTTTCCGGGHHHHH-HHHHHHHTT--TCEEEEECCCHHHHH
T ss_pred CCEEEEeCcccCCCHHHHHHHH-HHHHHHHhC--CCEEEEEecCHHHHH
Confidence 5899999999999999999985 688888765 679999999998764
No 144
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.97 E-value=0.00022 Score=78.40 Aligned_cols=34 Identities=15% Similarity=0.035 Sum_probs=30.4
Q ss_pred ccceeecCC-CcE--EEEEcCCCCCchhHHHHHHHHH
Q 043119 543 PNDTRIDND-GRI--NIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 543 ~n~~~~~~~-~~~--~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
.++++++.. |.+ ++|+|||||||||||+++++..
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 568888888 999 9999999999999999998763
No 145
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.97 E-value=0.0023 Score=67.10 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
++.++|+||+|+||||++|.++.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 46789999999999999998875
No 146
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.96 E-value=0.0003 Score=76.46 Aligned_cols=119 Identities=13% Similarity=0.036 Sum_probs=60.1
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhc-Cc---cccCCceee--eccc--ccch-----hhccchhHHHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHI-GS---FVPADAATV--GLTD--SKHM-----TAEQSSFMIDLHQVGMML 618 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~-g~---~vpa~~~~~--~~~~--~~~~-----~~~~s~f~~e~~~~~~~l 618 (792)
++.++|+||+|+||||+++.++....-... +. ++.+....- .+.. .+.+ ..+. +...-...+...+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~l~~~l 123 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGL-SIAELYRRLVKAV 123 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSC-CHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHHHH
Confidence 678999999999999999988764322110 11 222111000 0000 0000 0011 1111134455555
Q ss_pred HhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEccChhhhh
Q 043119 619 RQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVT-CDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 619 ~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~-~~~~~~~l~~TH~~~l~~ 672 (792)
.....+.++++||+....+..+ ..+...+++.+.. ...+..+|++||..++..
T Consensus 124 ~~~~~~~vlilDE~~~l~~~~~-~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 124 RDYGSQVVIVLDEIDAFVKKYN-DDILYKLSRINSEVNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp HTCCSCEEEEEETHHHHHHSSC-STHHHHHHHHHHSCCC--EEEEEEESCGGGGG
T ss_pred hccCCeEEEEEcChhhhhccCc-CHHHHHHhhchhhcCCCeEEEEEEECCCChHh
Confidence 5555689999999876442211 1222344444421 122567889999886543
No 147
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.94 E-value=0.0014 Score=68.06 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=19.3
Q ss_pred EEEEcCCCCCchhHHHHHHHH
Q 043119 555 NIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 555 ~~ltGpN~~GKSt~lk~i~~~ 575 (792)
++|+||||+||||++|.++..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 889999999999999998754
No 148
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.93 E-value=0.00095 Score=75.12 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
+..++|.|++||||||+|+++..-.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sL 191 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSM 191 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 5688999999999999999876543
No 149
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.93 E-value=0.0018 Score=77.73 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=47.8
Q ss_pred ccchhHHHHHHHHHHHHhCCC--CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 603 EQSSFMIDLHQVGMMLRQATS--QSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 603 ~~s~f~~e~~~~~~~l~~~~~--~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+|.......+++.++ +.+ +.++|||||++|+|+.+...|. .+++.|.+. |.++|+++|+.+...
T Consensus 521 tLSGGEkQRV~LA~aL--~~~~~~~llILDEPTagLdp~~~~~L~-~~L~~Lr~~--G~TVIvVeHdl~~i~ 587 (993)
T 2ygr_A 521 TLSGGEAQRIRLATQI--GSGLVGVLYVLDEPSIGLHQRDNRRLI-ETLTRLRDL--GNTLIVVEHDEDTIE 587 (993)
T ss_dssp GCCHHHHHHHHHHHHH--TTCCCSCEEEEECTTTTCCHHHHHHHH-HHHHHHHHT--TCEEEEECCCHHHHH
T ss_pred cCCHHHHHHHHHHHHH--hhCCCCcEEEEeCcccCCCHHHHHHHH-HHHHHHHHc--CCEEEEECCCHHHHH
Confidence 3443333333344433 444 5899999999999999999985 688888775 679999999998764
No 150
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=96.92 E-value=0.0026 Score=61.15 Aligned_cols=66 Identities=12% Similarity=0.056 Sum_probs=45.1
Q ss_pred ccchhHHHHHHHHHHHHh--CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 603 EQSSFMIDLHQVGMMLRQ--ATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 603 ~~s~f~~e~~~~~~~l~~--~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+|.....+..++.++.. ..+++++|||||++|.|+.....+. .+++.+.. +.++|++||+..+..
T Consensus 64 ~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~-~~l~~~~~---~~~~ivith~~~~~~ 131 (173)
T 3kta_B 64 AMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVA-DLIKESSK---ESQFIVITLRDVMMA 131 (173)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHH-HHHHHHTT---TSEEEEECSCHHHHT
T ss_pred cCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHH-HHHHHhcc---CCEEEEEEecHHHHH
Confidence 345433333444444432 3667999999999999998888875 46666554 357899999987653
No 151
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.91 E-value=0.0003 Score=68.57 Aligned_cols=23 Identities=43% Similarity=0.559 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
|++++|+|||||||||++|.++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999864
No 152
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.91 E-value=0.00041 Score=67.22 Aligned_cols=24 Identities=8% Similarity=0.117 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
|++++|+|||||||||+++.++..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999987653
No 153
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.91 E-value=0.0016 Score=77.53 Aligned_cols=50 Identities=18% Similarity=0.234 Sum_probs=42.0
Q ss_pred hCCCC--eEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 620 QATSQ--SLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 620 ~~~~~--slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+.++ .++|||||++|+|+.+...+. .+++.|.+. +.++|+++|++++..
T Consensus 394 L~~~p~~~llILDEPT~~Ld~~~~~~L~-~~l~~L~~~--G~TVIvVeHdl~~l~ 445 (842)
T 2vf7_A 394 LYSNLFGVVYVLDEPSAGLHPADTEALL-SALENLKRG--GNSLFVVEHDLDVIR 445 (842)
T ss_dssp TTTCCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHTT--TCEEEEECCCHHHHT
T ss_pred HhhCCCCeEEEeeCccccCCHHHHHHHH-HHHHHHHHc--CCEEEEEcCCHHHHH
Confidence 34555 599999999999999999995 588888775 679999999998764
No 154
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.89 E-value=0.0022 Score=68.26 Aligned_cols=25 Identities=16% Similarity=0.062 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
+..++|+||+|+||||+++.++...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4578999999999999999887544
No 155
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.86 E-value=0.0018 Score=72.54 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFL 578 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~l 578 (792)
|.+++|+||+|+|||||+.+++.....
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 889999999999999999999887655
No 156
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.85 E-value=0.0005 Score=67.81 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
+.+++|+|||||||||++|.++...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 7899999999999999999987543
No 157
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.85 E-value=0.0043 Score=63.54 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCchhHHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
-++|+||+|+||||++|.++..
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999999998754
No 158
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.81 E-value=0.00035 Score=76.92 Aligned_cols=32 Identities=16% Similarity=0.044 Sum_probs=27.5
Q ss_pred cceeecCC-CcEEEEEcCCCCCchhHHHHHHHH
Q 043119 544 NDTRIDND-GRINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 544 n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
++++++.. +..++|+|+|||||||||++++..
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 46777777 789999999999999999988654
No 159
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.81 E-value=0.00055 Score=67.51 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
|.+++|+|||||||||+++.++..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999988654
No 160
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.80 E-value=0.0031 Score=65.53 Aligned_cols=108 Identities=14% Similarity=0.069 Sum_probs=54.5
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeC
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDE 631 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE 631 (792)
.+.++|+||.|+||||+++.++.. .|..+ ..+... .............+.++-... ....+++++|||
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~-----~~~~~----~~v~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~vl~iDE 118 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE-----TNATF----IRVVGS--ELVKKFIGEGASLVKDIFKLA-KEKAPSIIFIDE 118 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH-----TTCEE----EEEEGG--GGCCCSTTHHHHHHHHHHHHH-HHTCSEEEEEET
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH-----hCCCE----EEEehH--HHHHhccchHHHHHHHHHHHH-HHcCCeEEEEEC
Confidence 346899999999999999988643 22211 111111 111111111111122221111 234678999999
Q ss_pred CCCC----------CCHHHHHHHHHHHHHHHHh--CCCCcEEEEEccChhhhh
Q 043119 632 FGKG----------TLTEDGIGLLGGTINYFVT--CDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 632 ~~~g----------t~~~~~~~l~~~~~~~l~~--~~~~~~~l~~TH~~~l~~ 672 (792)
+.+- .+. +.......+++.+.. ...+..+|.+|+..+..+
T Consensus 119 id~l~~~~~~~~~~~~~-~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~ 170 (285)
T 3h4m_A 119 IDAIAAKRTDALTGGDR-EVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILD 170 (285)
T ss_dssp THHHHBCCSSSCCGGGG-HHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBC
T ss_pred HHHhcccCccccCCccH-HHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcC
Confidence 8441 122 222233445555432 122467788898876654
No 161
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.78 E-value=0.00055 Score=67.42 Aligned_cols=38 Identities=16% Similarity=-0.017 Sum_probs=21.8
Q ss_pred cCceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHHH
Q 043119 538 VDTFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 538 ~~~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
...+..++++|+.. +.+++|+||+||||||+.|.++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 35788899999987 889999999999999999988743
No 162
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.75 E-value=0.00044 Score=74.21 Aligned_cols=35 Identities=20% Similarity=0.067 Sum_probs=29.0
Q ss_pred ccceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH
Q 043119 543 PNDTRIDND-GRINIITGPNYSGKSIYIKQVALIVF 577 (792)
Q Consensus 543 ~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~ 577 (792)
.++++++.. +.+++|+||||||||||++.++....
T Consensus 45 l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 45 IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 446666666 88999999999999999999887653
No 163
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.72 E-value=0.0023 Score=61.54 Aligned_cols=115 Identities=15% Similarity=0.106 Sum_probs=56.0
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhc---cchhHHHHHHHHHHHHhCCCCeEEE
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAE---QSSFMIDLHQVGMMLRQATSQSLCL 628 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~---~s~f~~e~~~~~~~l~~~~~~slvl 628 (792)
...++|+||.|+||||+++.++-...-.. ...+.....+..++......+ ...+...+.++...+.....+.+++
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ 120 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIINGE--VPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILF 120 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHHTC--SCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEE
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCC--CchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEE
Confidence 45789999999999999998875433211 111111112222221111111 1112223333333333456788999
Q ss_pred EeCCCCCCCHH---HHHHHHHHHHHHHHhCCCCcEEEEEccChhh
Q 043119 629 LDEFGKGTLTE---DGIGLLGGTINYFVTCDVPPKVLVCTHLTEL 670 (792)
Q Consensus 629 lDE~~~gt~~~---~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l 670 (792)
+||+-.-.... ....+ ...+..+.+.+ +..+|++|...+.
T Consensus 121 iDe~~~l~~~~~~~~~~~~-~~~l~~~~~~~-~~~~i~~~~~~~~ 163 (195)
T 1jbk_A 121 IDELHTMVGAGKADGAMDA-GNMLKPALARG-ELHCVGATTLDEY 163 (195)
T ss_dssp EETGGGGTT------CCCC-HHHHHHHHHTT-SCCEEEEECHHHH
T ss_pred EeCHHHHhccCcccchHHH-HHHHHHhhccC-CeEEEEeCCHHHH
Confidence 99986543211 00111 12333344432 4567778876654
No 164
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.72 E-value=0.0073 Score=63.48 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
+++++|+||.|+|||||..+++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 678899999999999999998765
No 165
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.72 E-value=0.00091 Score=72.17 Aligned_cols=52 Identities=25% Similarity=0.303 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhC---------CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccC
Q 043119 610 DLHQVGMMLRQA---------TSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHL 667 (792)
Q Consensus 610 e~~~~~~~l~~~---------~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~ 667 (792)
|.++++.++..+ .+++++|||||++|+|+.....+.. .+..+ ..++|++||.
T Consensus 270 qqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~-~l~~~-----~qt~i~~th~ 330 (359)
T 2o5v_A 270 EGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLD-LAASV-----PQAIVTGTEL 330 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHH-HHHHS-----SEEEEEESSC
T ss_pred HHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHH-HHHhc-----CcEEEEEEec
Confidence 334455555556 7899999999999999988777643 33332 1478899994
No 166
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.71 E-value=0.0055 Score=61.18 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCchhHHHHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
..++|+||.|+||||+++.++-..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 488999999999999999887543
No 167
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.69 E-value=0.00072 Score=71.64 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
+.+++|+|||||||||+++.++...
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999887653
No 168
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.68 E-value=0.0011 Score=65.71 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
..+.+|+|||||||||++.+|..+.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4699999999999999999886544
No 169
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.65 E-value=0.00085 Score=66.64 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCCchhHHHHHHH
Q 043119 551 DGRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 551 ~~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
.|++++|+|||||||||+++.++.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 488999999999999999998764
No 170
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.61 E-value=0.00085 Score=64.14 Aligned_cols=24 Identities=33% Similarity=0.324 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
+.+++|+|||||||||++|.++..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988654
No 171
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.56 E-value=0.0025 Score=61.12 Aligned_cols=115 Identities=14% Similarity=0.138 Sum_probs=55.3
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhc---cchhHHHHHHHHHHHHhCCCCeEEE
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAE---QSSFMIDLHQVGMMLRQATSQSLCL 628 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~---~s~f~~e~~~~~~~l~~~~~~slvl 628 (792)
...++|+||.|+||||+++.++....-. +.+.......+-.++......+ .......+.++...+.....+.+++
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ 120 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQG--DVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMF 120 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHTT--CSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhc--CCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEE
Confidence 4567999999999999999887543221 1111101111111221111111 1111222333333444455678999
Q ss_pred EeCCCCCCC----HHHHHHHHHHHHHHHHhCCCCcEEEEEccChhh
Q 043119 629 LDEFGKGTL----TEDGIGLLGGTINYFVTCDVPPKVLVCTHLTEL 670 (792)
Q Consensus 629 lDE~~~gt~----~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l 670 (792)
+||+..=.. ......+.. .+..+.+.. ...+|.+|+..+.
T Consensus 121 iDe~~~l~~~~~~~~~~~~~~~-~l~~~~~~~-~~~ii~~~~~~~~ 164 (187)
T 2p65_A 121 IDEIHTVVGAGAVAEGALDAGN-ILKPMLARG-ELRCIGATTVSEY 164 (187)
T ss_dssp ETTGGGGSSSSSSCTTSCCTHH-HHHHHHHTT-CSCEEEEECHHHH
T ss_pred EeCHHHhcccccccccchHHHH-HHHHHHhcC-CeeEEEecCHHHH
Confidence 999854320 111122222 233333432 4567777776653
No 172
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.55 E-value=0.0055 Score=68.98 Aligned_cols=105 Identities=18% Similarity=0.221 Sum_probs=57.3
Q ss_pred EEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhccchhHH-HHHHHHHHHHhCC--CCeEEEEeC
Q 043119 555 NIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMI-DLHQVGMMLRQAT--SQSLCLLDE 631 (792)
Q Consensus 555 ~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~~s~f~~-e~~~~~~~l~~~~--~~slvllDE 631 (792)
++|+||||+||||++|.++... ..++ ..+.. .+ +. +.|.. .-.++..+++.+. .++++++||
T Consensus 67 vLL~GppGtGKTtLaraIa~~~---~~~~------i~i~g--~~-~~---~~~~g~~~~~v~~lfq~a~~~~p~il~IDE 131 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEA---RVPF------ITASG--SD-FV---EMFVGVGAARVRDLFETAKRHAPCIVFIDE 131 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHT---TCCE------EEEEG--GG-GT---SSCTTHHHHHHHHHTTTSSSSSSCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCCE------EEEeh--hH-HH---HhhhhhHHHHHHHHHHHHHhcCCCEEEEeh
Confidence 8999999999999999988542 1111 11111 11 10 01111 1234555666553 468999999
Q ss_pred CCC-----CC----CHHHHHHHHHHHHHHHHh--CCCCcEEEEEccChhhhhcC
Q 043119 632 FGK-----GT----LTEDGIGLLGGTINYFVT--CDVPPKVLVCTHLTELLNEG 674 (792)
Q Consensus 632 ~~~-----gt----~~~~~~~l~~~~~~~l~~--~~~~~~~l~~TH~~~l~~~~ 674 (792)
+-. +. ...+.......++..+.. ......++.+|+.++.++..
T Consensus 132 Id~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~a 185 (499)
T 2dhr_A 132 IDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 185 (499)
T ss_dssp GGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTT
T ss_pred HHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcc
Confidence 821 11 122333333445554432 11245677789998876543
No 173
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.55 E-value=0.00095 Score=68.11 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCCchhHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~ 573 (792)
+.+++|+|||||||||++|.++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4699999999999999999887
No 174
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.51 E-value=0.0011 Score=73.03 Aligned_cols=33 Identities=27% Similarity=0.225 Sum_probs=25.7
Q ss_pred ccceeecCCCcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 543 PNDTRIDNDGRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 543 ~n~~~~~~~~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
.+++ +...+.+++|+|||||||||+|++++...
T Consensus 159 L~~l-~~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 159 FRRL-IKRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp HHHH-HTSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHH-HHhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 3444 44347899999999999999999886543
No 175
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.49 E-value=0.0071 Score=63.37 Aligned_cols=25 Identities=28% Similarity=0.048 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
...++|.||.|+|||++.|.+|--.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999887543
No 176
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.49 E-value=0.0012 Score=63.22 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
+.+++|+|||||||||++|.++..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 679999999999999999988754
No 177
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.48 E-value=0.009 Score=64.34 Aligned_cols=114 Identities=16% Similarity=0.188 Sum_probs=58.6
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHh-hcCccccCCceeeec------ccccch-hhccchhHHHHHHHHHHHHhCCC
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLS-HIGSFVPADAATVGL------TDSKHM-TAEQSSFMIDLHQVGMMLRQATS 623 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~la-q~g~~vpa~~~~~~~------~~~~~~-~~~~s~f~~e~~~~~~~l~~~~~ 623 (792)
+++++|+||+|+|||||..+++...... ....|+.++...-.. .+.+.+ .....+ ..++.++...+.....
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~-~e~~~~~~~~l~~~~~ 141 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT-GEQALEICDALARSGA 141 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSS-HHHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCC-HHHHHHHHHHHHhccC
Confidence 7899999999999999999887655432 122344443211000 000000 000111 2233333333333467
Q ss_pred CeEEEEeCCCCCCCHHH------------H-HHHHHHHHHHH----HhCCCCcEEEEEccChh
Q 043119 624 QSLCLLDEFGKGTLTED------------G-IGLLGGTINYF----VTCDVPPKVLVCTHLTE 669 (792)
Q Consensus 624 ~slvllDE~~~gt~~~~------------~-~~l~~~~~~~l----~~~~~~~~~l~~TH~~~ 669 (792)
.++|++|.++.=....+ . ..+ ...+..| .+. ++++|++.|...
T Consensus 142 ~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~-~~~l~~L~~~a~~~--~~~VI~~nq~~~ 201 (356)
T 1u94_A 142 VDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMM-SQAMRKLAGNLKQS--NTLLIFINQIRM 201 (356)
T ss_dssp CSEEEEECGGGCCCHHHHTTC------CHHHHHH-HHHHHHHHHHHHHH--TCEEEEEEC---
T ss_pred CCEEEEcCHHHhcchhhhccccccchhHHHHHHH-HHHHHHHHHHHHHh--CCEEEEEecccc
Confidence 89999999987664211 0 112 2233333 343 678888888654
No 178
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.46 E-value=0.0011 Score=70.03 Aligned_cols=25 Identities=20% Similarity=0.072 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCchhHHHHHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVALIVF 577 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~~~~ 577 (792)
..++|+||.|+|||++++.++....
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999998876443
No 179
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.44 E-value=0.0046 Score=68.18 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
+.+++++||||+||||++..++...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999887543
No 180
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.44 E-value=0.0016 Score=77.67 Aligned_cols=50 Identities=20% Similarity=0.149 Sum_probs=30.9
Q ss_pred hCCCCeEEEEeCCC-CCCCHHHHHHHHHHHHHHHHhCCCCcEEEE-EccChhhhh
Q 043119 620 QATSQSLCLLDEFG-KGTLTEDGIGLLGGTINYFVTCDVPPKVLV-CTHLTELLN 672 (792)
Q Consensus 620 ~~~~~slvllDE~~-~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~-~TH~~~l~~ 672 (792)
...+.++||+||+- ++.++.....+...+... .....++++ |||+.+.+.
T Consensus 205 ~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~---~~~~~iIl~SAT~~~~~l~ 256 (773)
T 2xau_A 205 DLSRYSCIILDEAHERTLATDILMGLLKQVVKR---RPDLKIIIMSATLDAEKFQ 256 (773)
T ss_dssp TCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHH---CTTCEEEEEESCSCCHHHH
T ss_pred cccCCCEEEecCccccccchHHHHHHHHHHHHh---CCCceEEEEeccccHHHHH
Confidence 35788999999998 588765544444333322 111345556 599876544
No 181
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.41 E-value=0.017 Score=58.94 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
.+.++|+||.|+||||+.+.++.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999998875
No 182
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.40 E-value=0.0015 Score=64.36 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=25.7
Q ss_pred eeecCC-CcEEEEEcCCCCCchhHHHHHHHHHH
Q 043119 546 TRIDND-GRINIITGPNYSGKSIYIKQVALIVF 577 (792)
Q Consensus 546 ~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~ 577 (792)
..+... +.+++|+|||||||||++|.++...-
T Consensus 18 ~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 18 QRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp HHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 334334 88999999999999999999876543
No 183
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.36 E-value=0.0031 Score=67.54 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCchhHHHHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
..++|+||||+||||++|.++...
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 578999999999999999988653
No 184
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.33 E-value=0.0051 Score=66.06 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFL 578 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~l 578 (792)
|+++.|+||+|+|||||+.+++..+.+
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~ 148 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQL 148 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 889999999999999999998876543
No 185
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.32 E-value=0.0089 Score=71.67 Aligned_cols=107 Identities=15% Similarity=0.171 Sum_probs=55.9
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhccchhHHHHHHHHHHHHhC--CCCeEEEE
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQA--TSQSLCLL 629 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~--~~~slvll 629 (792)
++.++|+||+|+||||++|.++.. .|.++ ..+.. .+........+.. .+..++..+ ..+.++++
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~-----l~~~~----i~v~~--~~l~~~~~g~~~~---~l~~vf~~a~~~~p~il~i 303 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANE-----TGAFF----FLING--PEIMSKLAGESES---NLRKAFEEAEKNAPAIIFI 303 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHT-----TTCEE----EEEEH--HHHSSSSTTHHHH---HHHHHHHHHHHHCSEEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH-----cCCcE----EEEEc--hHhhhhhhhhHHH---HHHHHHHHHHhcCCcEEEe
Confidence 568999999999999999988643 22111 11110 1111111111111 223333322 46799999
Q ss_pred eCCCCCCC------HHHHHHHHHHHHHHHHhC--CCCcEEEEEccChhhhh
Q 043119 630 DEFGKGTL------TEDGIGLLGGTINYFVTC--DVPPKVLVCTHLTELLN 672 (792)
Q Consensus 630 DE~~~gt~------~~~~~~l~~~~~~~l~~~--~~~~~~l~~TH~~~l~~ 672 (792)
||+-.... ......+...++..+-.. .....++.+||..+..+
T Consensus 304 DEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld 354 (806)
T 1ypw_A 304 DELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp ESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSC
T ss_pred ccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcC
Confidence 99943321 111223333444444321 12567888999886554
No 186
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.30 E-value=0.0057 Score=64.35 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
++.++|+||+|+||||+.|.++..
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 467899999999999999988753
No 187
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.30 E-value=0.0016 Score=69.23 Aligned_cols=23 Identities=17% Similarity=0.314 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCchhHHHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
.+++|||||||||||+||.+...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 48999999999999999998754
No 188
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.21 E-value=0.0038 Score=71.47 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 551 DGRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 551 ~~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
.+.+++|+||||+||||++|+++...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 36689999999999999999998765
No 189
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.20 E-value=0.028 Score=61.87 Aligned_cols=108 Identities=18% Similarity=0.196 Sum_probs=59.0
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhccchhHHHH-HHHHHHHH--hCCCCeEEE
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDL-HQVGMMLR--QATSQSLCL 628 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~~s~f~~e~-~~~~~~l~--~~~~~slvl 628 (792)
.+-+++.||.|+|||++.|++|. +.|+++- .+.. +. -.|.+.+|- ..+..+.. ....|++|+
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~-----e~~~~~~----~v~~--s~----l~sk~~Gese~~ir~~F~~A~~~~P~Iif 279 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAA-----TIGANFI----FSPA--SG----IVDKYIGESARIIREMFAYAKEHEPCIIF 279 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH-----HHTCEEE----EEEG--GG----TCCSSSSHHHHHHHHHHHHHHHSCSEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHH-----HhCCCEE----EEeh--hh----hccccchHHHHHHHHHHHHHHhcCCceee
Confidence 35789999999999999998874 3343211 1111 11 112222221 11222222 346799999
Q ss_pred EeCCCC--------CCCH-HHHHHHHHHHHHHHHhC--CCCcEEEEEccChhhhhcC
Q 043119 629 LDEFGK--------GTLT-EDGIGLLGGTINYFVTC--DVPPKVLVCTHLTELLNEG 674 (792)
Q Consensus 629 lDE~~~--------gt~~-~~~~~l~~~~~~~l~~~--~~~~~~l~~TH~~~l~~~~ 674 (792)
+||+-+ |.+. .+.......++..+-.. ..+..+|.||..++.++..
T Consensus 280 iDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpA 336 (437)
T 4b4t_L 280 MDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPA 336 (437)
T ss_dssp EECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTT
T ss_pred eecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHH
Confidence 999853 2211 12222333455554321 1256889999999887654
No 190
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.15 E-value=0.0026 Score=70.65 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
+++++|+|||||||||+|++|+.+.
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhh
Confidence 6899999999999999999998765
No 191
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.14 E-value=0.0022 Score=65.75 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCCchhHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~ 573 (792)
+.+++|+|||||||||++|.++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 7899999999999999999887
No 192
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.13 E-value=0.0015 Score=70.92 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=28.5
Q ss_pred eccceeecCC-CcEEEEEcCCCCCchhHHHHHHHH
Q 043119 542 IPNDTRIDND-GRINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 542 v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
+.++++++.+ +++++|+||||+||||+++.++..
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3456677777 899999999999999999998853
No 193
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.13 E-value=0.0029 Score=68.80 Aligned_cols=46 Identities=20% Similarity=0.128 Sum_probs=34.6
Q ss_pred CC-CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhh
Q 043119 622 TS-QSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELL 671 (792)
Q Consensus 622 ~~-~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~ 671 (792)
.+ ++++|+|||++|.|+.....+.. .+..+.+ +.++|++||+.++.
T Consensus 303 ~~~~~~lllDEp~~~LD~~~~~~l~~-~l~~~~~---~~~vi~~th~~~~~ 349 (371)
T 3auy_A 303 GNRVECIILDEPTVYLDENRRAKLAE-IFRKVKS---IPQMIIITHHRELE 349 (371)
T ss_dssp SSCCSEEEEESTTTTCCHHHHHHHHH-HHHHCCS---CSEEEEEESCGGGG
T ss_pred cCCCCeEEEeCCCCcCCHHHHHHHHH-HHHHhcc---CCeEEEEEChHHHH
Confidence 56 89999999999999988777754 4444422 34789999998754
No 194
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.12 E-value=0.0015 Score=66.03 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
|.+++|.|||||||||++|.++..
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 889999999999999999987664
No 195
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.12 E-value=0.022 Score=61.46 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
.+.++|+||.|+||||+.|.++.
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998864
No 196
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.11 E-value=0.0026 Score=62.35 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
|++++|+||+|+||||+++.+..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHh
Confidence 78999999999999999997754
No 197
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.11 E-value=0.0055 Score=66.36 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
+..++|+||.|+||||+++.++-..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999887543
No 198
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.09 E-value=0.0027 Score=62.53 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
+.+++|+|||||||||+++.++...
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999887543
No 199
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.029 Score=61.70 Aligned_cols=106 Identities=20% Similarity=0.213 Sum_probs=58.1
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhccchhHHHH-HHHHHHHHh--CCCCeEEE
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDL-HQVGMMLRQ--ATSQSLCL 628 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~~s~f~~e~-~~~~~~l~~--~~~~slvl 628 (792)
.+-+++.||.|+|||++.|++|.- .|+++ ..+.. ++ -.|.+.+|. ..+..++.. ...|++++
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~-----~~~~~----~~v~~--~~----l~~~~~Ge~e~~ir~lF~~A~~~aP~Iif 270 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS-----TKAAF----IRVNG--SE----FVHKYLGEGPRMVRDVFRLARENAPSIIF 270 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH-----HTCEE----EEEEG--GG----TCCSSCSHHHHHHHHHHHHHHHTCSEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHH-----hCCCe----EEEec--ch----hhccccchhHHHHHHHHHHHHHcCCCeee
Confidence 357899999999999999988743 33321 11111 11 112222221 223333332 35789999
Q ss_pred EeCCCC----------CCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEccChhhhhc
Q 043119 629 LDEFGK----------GTLTEDGIGLLGGTINYFVT--CDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 629 lDE~~~----------gt~~~~~~~l~~~~~~~l~~--~~~~~~~l~~TH~~~l~~~ 673 (792)
+||+-+ +.+. +...+...++..+-. ...+..+|.||+.++.++.
T Consensus 271 iDEiD~i~~~R~~~~~~~~~-~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~ 326 (428)
T 4b4t_K 271 IDEVDSIATKRFDAQTGSDR-EVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDP 326 (428)
T ss_dssp EECTHHHHCSCSSSCSCCCC-HHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCH
T ss_pred chhhhhhhccccCCCCCCCh-HHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcCh
Confidence 999831 1121 222333445555432 1235678889998887654
No 200
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.05 E-value=0.00074 Score=76.45 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=24.2
Q ss_pred cceeecCC-CcEEEEEcCCCCCchhHHHHHHH
Q 043119 544 NDTRIDND-GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 544 n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+++++... |.+++|+|||||||||+|++++.
T Consensus 251 ~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 251 AYLWLAIEHKFSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp HHHHHHHHTTCCEEEEESTTSSHHHHHHHHGG
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHh
Confidence 34444444 77899999999999999997653
No 201
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.03 E-value=0.0053 Score=61.99 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVF 577 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~ 577 (792)
|+.+++.||+||||||++....+-..
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~~~~ 101 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFILDDF 101 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHHhcch
Confidence 57899999999999999987655433
No 202
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.02 E-value=0.02 Score=63.37 Aligned_cols=48 Identities=10% Similarity=0.085 Sum_probs=38.2
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhhh
Q 043119 622 TSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 622 ~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~~ 672 (792)
.+++++|||||++|+|+.....++. .+..+... +.++|++||+.++..
T Consensus 354 ~~~~~lllDEp~~~LD~~~~~~l~~-~l~~~~~~--~~~~ii~th~~~~~~ 401 (430)
T 1w1w_A 354 QPSPFFVLDEVDAALDITNVQRIAA-YIRRHRNP--DLQFIVISLKNTMFE 401 (430)
T ss_dssp SCCSEEEESSTTTTCCHHHHHHHHH-HHHHHCBT--TBEEEEECSCHHHHT
T ss_pred CCCCEEEeCCCcccCCHHHHHHHHH-HHHHHhcC--CCEEEEEECCHHHHH
Confidence 6889999999999999988887754 55555432 568999999977654
No 203
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.01 E-value=0.024 Score=60.23 Aligned_cols=110 Identities=16% Similarity=0.069 Sum_probs=54.3
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeC
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDE 631 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE 631 (792)
.+-++|+||.|+|||++.|.++.-. .|..+ ..+... +............+.++-... ....+++|++||
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~----~~~~~----~~i~~~--~l~~~~~g~~~~~~~~lf~~a-~~~~~~vl~iDE 113 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA----NNSTF----FSISSS--DLVSKWLGESEKLVKNLFQLA-RENKPSIIFIDE 113 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT----TSCEE----EEEECC--SSCCSSCCSCHHHHHHHHHHH-HHTSSEEEEEET
T ss_pred CceEEEECCCCccHHHHHHHHHHHc----CCCcE----EEEEhH--HHHhhhhhHHHHHHHHHHHHH-HhcCCcEEEeec
Confidence 3578999999999999999887532 01110 011111 111110111111122222222 125689999999
Q ss_pred CCCC-----C-CHHHHHHHHHHHHHHHHh---CCCCcEEEEEccChhhhh
Q 043119 632 FGKG-----T-LTEDGIGLLGGTINYFVT---CDVPPKVLVCTHLTELLN 672 (792)
Q Consensus 632 ~~~g-----t-~~~~~~~l~~~~~~~l~~---~~~~~~~l~~TH~~~l~~ 672 (792)
+-+- . .......+...++..+-. ...+..+|.+|...+..+
T Consensus 114 id~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld 163 (322)
T 1xwi_A 114 IDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLD 163 (322)
T ss_dssp TTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSC
T ss_pred HHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCC
Confidence 8642 1 111222333444544432 122456777888776544
No 204
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.01 E-value=0.0027 Score=62.62 Aligned_cols=21 Identities=29% Similarity=0.131 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+++|+|||||||||+.|.++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 205
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.99 E-value=0.0029 Score=67.04 Aligned_cols=22 Identities=27% Similarity=0.226 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCchhHHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
+++|+|||||||||+++.++.+
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 8899999999999999987654
No 206
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.98 E-value=0.00052 Score=69.11 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=24.7
Q ss_pred ceeecCCCcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 545 DTRIDNDGRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 545 ~~~~~~~~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
+++|.. .+++|+|||||||||+|++|+.+.
T Consensus 22 ~~~~~~--~~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 22 TFDLDE--LVTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp EECHHH--HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEcC--cEEEEECCCCCCHHHHHHHHhccc
Confidence 455543 688999999999999999998764
No 207
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.95 E-value=0.014 Score=62.32 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.5
Q ss_pred EEEEcCCCCCchhHHHHHHHHHH
Q 043119 555 NIITGPNYSGKSIYIKQVALIVF 577 (792)
Q Consensus 555 ~~ltGpN~~GKSt~lk~i~~~~~ 577 (792)
++++||+|+||||+++.++....
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999999886643
No 208
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.92 E-value=0.012 Score=63.39 Aligned_cols=108 Identities=20% Similarity=0.244 Sum_probs=55.1
Q ss_pred cEEEEEcCCCCCchhHHHHHHHHHHHhhcCcc-ccCCc----------eeeecccccchh----hccchhHHHHHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVALIVFLSHIGSF-VPADA----------ATVGLTDSKHMT----AEQSSFMIDLHQVGMM 617 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~-vpa~~----------~~~~~~~~~~~~----~~~s~f~~e~~~~~~~ 617 (792)
..++++|+||+||||+++.++... ...|.+ ..... ..+.+.|+.-.. ...+. .+.+.+. .
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~--~~~~~~~-~ 242 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK--PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNE--IEKQAIL-A 242 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC--CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCH--HHHHHHH-G
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhH--HHHHHHH-H
Confidence 378999999999999999875432 111111 11111 112333311110 01111 2222222 3
Q ss_pred HHhCCCCeEEEEe-CCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEc-cCh
Q 043119 618 LRQATSQSLCLLD-EFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCT-HLT 668 (792)
Q Consensus 618 l~~~~~~slvllD-E~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~T-H~~ 668 (792)
+....+.-++++| +...|.+..+...+...+.+.. . + .+.+++.+ ||.
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~-~-~piilV~NK~Dl 292 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-K-D-LPFLVVINKIDV 292 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-T-T-SCEEEEECCTTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-C-C-CCEEEEEECccc
Confidence 3334566788999 8888888877666544333322 1 2 34444444 654
No 209
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.91 E-value=0.0032 Score=66.37 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCCchhHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~ 573 (792)
+++++|+||||+||||++++++
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 6799999999999999999876
No 210
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.90 E-value=0.0023 Score=68.71 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCCCchhHHHHHH
Q 043119 551 DGRINIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 551 ~~~~~~ltGpN~~GKSt~lk~i~ 573 (792)
.|++++|+||||+|||||++.++
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHh
Confidence 47899999999999999999876
No 211
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.89 E-value=0.039 Score=54.05 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCchhHHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
.++|+||.|+||||+++.++-.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988754
No 212
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.88 E-value=0.0032 Score=61.93 Aligned_cols=21 Identities=24% Similarity=0.023 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+++|+|||||||||+.|.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999998875
No 213
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.87 E-value=0.012 Score=63.89 Aligned_cols=7 Identities=14% Similarity=0.083 Sum_probs=3.2
Q ss_pred eeeeccc
Q 043119 590 ATVGLTD 596 (792)
Q Consensus 590 ~~~~~~~ 596 (792)
..+-++|
T Consensus 306 ~~~lllD 312 (371)
T 3auy_A 306 VECIILD 312 (371)
T ss_dssp CSEEEEE
T ss_pred CCeEEEe
Confidence 3444455
No 214
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.86 E-value=0.023 Score=59.53 Aligned_cols=25 Identities=20% Similarity=0.118 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
+..++|+||.|+|||++.+.++-..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999887654
No 215
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.86 E-value=0.0056 Score=65.19 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVF 577 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~ 577 (792)
|+++.|+||+|+|||||+.+++..+.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHh
Confidence 78999999999999999999886643
No 216
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.79 E-value=0.014 Score=58.91 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|++|+||||+++.+..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 578999999999999998764
No 217
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.78 E-value=0.021 Score=60.96 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=20.3
Q ss_pred EEEEcCCCCCchhHHHHHHHHHH
Q 043119 555 NIITGPNYSGKSIYIKQVALIVF 577 (792)
Q Consensus 555 ~~ltGpN~~GKSt~lk~i~~~~~ 577 (792)
++|+||+|+||||+++.++....
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999886543
No 218
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.73 E-value=0.018 Score=57.66 Aligned_cols=106 Identities=16% Similarity=0.178 Sum_probs=55.4
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcC--ccccCCceeeeccc--ccc-hh---hccchhHHHHHHHHHHHHh---
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIG--SFVPADAATVGLTD--SKH-MT---AEQSSFMIDLHQVGMMLRQ--- 620 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g--~~vpa~~~~~~~~~--~~~-~~---~~~s~f~~e~~~~~~~l~~--- 620 (792)
|.++++|||-|+||||.+.+.+.-..-+..- .+-|....+ +.-. ++. +. ...... .++...+..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r-~~~~i~srlG~~~~~~~~~~~----~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-SIRNIQSRTGTSLPSVEVESA----PEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG-GCSSCCCCCCCSSCCEEESST----HHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch-HHHHHHHhcCCCccccccCCH----HHHHHHHHHHhh
Confidence 7899999999999999988776544322111 111232222 1101 110 00 001111 122222222
Q ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhh
Q 043119 621 ATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTEL 670 (792)
Q Consensus 621 ~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l 670 (792)
..+.++|++||.-- .+. + + ...+..+.+. +..+|++-|..+.
T Consensus 87 ~~~~dvViIDEaQ~-l~~-~---~-ve~l~~L~~~--gi~Vil~Gl~~df 128 (223)
T 2b8t_A 87 NDETKVIGIDEVQF-FDD-R---I-CEVANILAEN--GFVVIISGLDKNF 128 (223)
T ss_dssp CTTCCEEEECSGGG-SCT-H---H-HHHHHHHHHT--TCEEEEECCSBCT
T ss_pred CCCCCEEEEecCcc-CcH-H---H-HHHHHHHHhC--CCeEEEEeccccc
Confidence 13579999999743 222 2 2 1245666664 5789999996554
No 219
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.70 E-value=0.0057 Score=64.93 Aligned_cols=32 Identities=19% Similarity=0.246 Sum_probs=26.2
Q ss_pred ceeecCC-CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 545 DTRIDND-GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 545 ~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
++++... +++++|+||||+||||++..++...
T Consensus 97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4555544 7899999999999999999888654
No 220
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.66 E-value=0.0032 Score=66.34 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCCchhHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~ 573 (792)
+++++|+||||+||||+|++++
T Consensus 169 geiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHS
T ss_pred CCeEEEECCCCCcHHHHHHHhc
Confidence 6799999999999999999875
No 221
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.057 Score=59.39 Aligned_cols=108 Identities=14% Similarity=0.173 Sum_probs=56.3
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhccchhHHHH-HHHHHHH--HhCCCCeEEE
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDL-HQVGMML--RQATSQSLCL 628 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~~s~f~~e~-~~~~~~l--~~~~~~slvl 628 (792)
.+-+++.||.|+|||++.|++|. +.|+++- .+.. +.. .|.+.+|- ..+..+. +....|++++
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~-----e~~~~f~----~v~~--s~l----~~~~vGese~~ir~lF~~A~~~aP~Iif 279 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAA-----QTNATFL----KLAA--PQL----VQMYIGEGAKLVRDAFALAKEKAPTIIF 279 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH-----HHTCEEE----EEEG--GGG----CSSCSSHHHHHHHHHHHHHHHHCSEEEE
T ss_pred CCeeEEECcCCCCHHHHHHHHHH-----HhCCCEE----EEeh--hhh----hhcccchHHHHHHHHHHHHHhcCCeEEe
Confidence 35789999999999999998874 3343211 1111 111 11121111 1222222 2235789999
Q ss_pred EeCCC-----CCCCHHH----HHHHHHHHHHHHHhC--CCCcEEEEEccChhhhhcC
Q 043119 629 LDEFG-----KGTLTED----GIGLLGGTINYFVTC--DVPPKVLVCTHLTELLNEG 674 (792)
Q Consensus 629 lDE~~-----~gt~~~~----~~~l~~~~~~~l~~~--~~~~~~l~~TH~~~l~~~~ 674 (792)
+||+- |+.+... .......++..+-.. ..+..+|.||..++.++..
T Consensus 280 iDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~A 336 (434)
T 4b4t_M 280 IDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPA 336 (434)
T ss_dssp EECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTT
T ss_pred ecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHh
Confidence 99963 2221111 122223344444221 1245788899998877643
No 222
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.63 E-value=0.0049 Score=61.64 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCchhHHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
.+++|+||+||||||+.+.++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998764
No 223
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.61 E-value=0.038 Score=58.51 Aligned_cols=24 Identities=33% Similarity=0.296 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
.+-++|+||.|+|||++.|.++.-
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346899999999999999988653
No 224
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.55 E-value=0.027 Score=60.67 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
...++|+||.|+||||+++.++-..
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999886543
No 225
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.55 E-value=0.0056 Score=58.84 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
|.+++|+|++||||||+.|.++..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 779999999999999999988764
No 226
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.54 E-value=0.032 Score=60.10 Aligned_cols=23 Identities=35% Similarity=0.325 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCchhHHHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
+-++|+||.|+|||++.|.++..
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 45789999999999999988754
No 227
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.45 E-value=0.006 Score=60.14 Aligned_cols=23 Identities=30% Similarity=0.252 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+.+++|+||+||||||+.+.++.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999998764
No 228
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.44 E-value=0.0086 Score=62.95 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCchhHHHHHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVALIVF 577 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~~~~ 577 (792)
..++|+||+|+||||+.|.++....
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc
Confidence 3689999999999999999887553
No 229
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.43 E-value=0.069 Score=57.57 Aligned_cols=116 Identities=14% Similarity=0.197 Sum_probs=59.1
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHh-hcCccccCCceeeec------cccc-chhhccchhHHHHHHHHHHHHhCCC
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLS-HIGSFVPADAATVGL------TDSK-HMTAEQSSFMIDLHQVGMMLRQATS 623 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~la-q~g~~vpa~~~~~~~------~~~~-~~~~~~s~f~~e~~~~~~~l~~~~~ 623 (792)
|++++|.||.|+|||||..+++...... ....|+..+...-.. ++.+ .......++ .++.+....+.....
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~-e~~l~~l~~l~~~~~ 152 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNG-EQALEIMELLVRSGA 152 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSH-HHHHHHHHHHHTTTC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcH-HHHHHHHHHHHhcCC
Confidence 7899999999999999999887655332 122344333211000 0000 000011122 233333333333456
Q ss_pred CeEEEEeCCCCCCC-H-HH----------HHHHHHHHHHHH---HhCCCCcEEEEEccChh
Q 043119 624 QSLCLLDEFGKGTL-T-ED----------GIGLLGGTINYF---VTCDVPPKVLVCTHLTE 669 (792)
Q Consensus 624 ~slvllDE~~~gt~-~-~~----------~~~l~~~~~~~l---~~~~~~~~~l~~TH~~~ 669 (792)
.++|++|.++.=.. . .+ .......++..| ++. .++++|++.|...
T Consensus 153 ~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~-~~~~VI~~nq~~~ 212 (366)
T 1xp8_A 153 IDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSK-TGTAAIFINQVRE 212 (366)
T ss_dssp CSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTT-TCCEEEEEEEC--
T ss_pred CCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHH-cCCEEEEEEeccc
Confidence 89999999986442 1 01 111122344444 333 3678888888654
No 230
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.42 E-value=0.0033 Score=71.55 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=25.7
Q ss_pred ceeecCCCcEEEEEcCCCCCchhHHHHHHHH
Q 043119 545 DTRIDNDGRINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 545 ~~~~~~~~~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
+++++....+++|||+|||||||+|.+|.++
T Consensus 53 ~~~l~f~~g~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 53 QLELELGGGFCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp CEEEECCCSEEEEEESHHHHHHHHTHHHHHH
T ss_pred eEEEecCCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 4556655349999999999999999998776
No 231
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.33 E-value=0.058 Score=58.56 Aligned_cols=106 Identities=16% Similarity=0.175 Sum_probs=57.8
Q ss_pred cEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhccchhHHHH-HHHHHHHHh--CCCCeEEEE
Q 043119 553 RINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDL-HQVGMMLRQ--ATSQSLCLL 629 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~~s~f~~e~-~~~~~~l~~--~~~~slvll 629 (792)
+-+++.||.|+|||.+.|++|. +.|+++ ..+.. ++ -.|.+.+|- ..+..+... ...|++|++
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~-----e~~~~f----~~v~~--s~----l~sk~vGese~~vr~lF~~Ar~~aP~IIFi 247 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAH-----HTDCKF----IRVSG--AE----LVQKYIGEGSRMVRELFVMAREHAPSIIFM 247 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHH-----HHTCEE----EEEEG--GG----GSCSSTTHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CceEEeCCCCCCHHHHHHHHHH-----hhCCCc----eEEEh--HH----hhccccchHHHHHHHHHHHHHHhCCceEee
Confidence 4678999999999999998874 333321 11111 11 112222221 223333333 357899999
Q ss_pred eCCCCC-------CCHH--HHHHHHHHHHHHHHh--CCCCcEEEEEccChhhhhc
Q 043119 630 DEFGKG-------TLTE--DGIGLLGGTINYFVT--CDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 630 DE~~~g-------t~~~--~~~~l~~~~~~~l~~--~~~~~~~l~~TH~~~l~~~ 673 (792)
||+-+- .+.. +.......++..+-. ...+..+|.||..++.++.
T Consensus 248 DEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDp 302 (405)
T 4b4t_J 248 DEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDP 302 (405)
T ss_dssp ESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCH
T ss_pred ecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCH
Confidence 997532 1111 222233345544432 2235578889999888764
No 232
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.32 E-value=0.0046 Score=60.87 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=22.6
Q ss_pred ecCC-CcEEEEEcCCCCCchhHHHHHHH
Q 043119 548 IDND-GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 548 ~~~~-~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+... +..++|+|+||+|||||++.++.
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4444 78899999999999999997653
No 233
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.32 E-value=0.059 Score=60.52 Aligned_cols=105 Identities=16% Similarity=0.232 Sum_probs=53.0
Q ss_pred cEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhccchhHHHH-HHHHHHHHh--CCCCeEEEE
Q 043119 553 RINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDL-HQVGMMLRQ--ATSQSLCLL 629 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~~s~f~~e~-~~~~~~l~~--~~~~slvll 629 (792)
.-++|+||.|+|||++.|.++.- .|.++ -.++...+. +.+..+. ..+..++.. ...+++++|
T Consensus 239 ~~vLL~GppGtGKT~lAraia~~-----~~~~f-------v~vn~~~l~---~~~~g~~~~~~~~~f~~A~~~~p~iLfL 303 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVANE-----TGAFF-------FLINGPEIM---SKLAGESESNLRKAFEEAEKNAPAIIFI 303 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH-----CSSEE-------EEEEHHHHH---TSCTTHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CcEEEECcCCCCHHHHHHHHHHH-----hCCCE-------EEEEchHhh---hhhcchhHHHHHHHHHHHHhcCCcEEEe
Confidence 35789999999999999988642 23211 111100010 1111111 122223322 245789999
Q ss_pred eCCC-----C-CCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEccChhhhh
Q 043119 630 DEFG-----K-GTLTEDGIGLLGGTINYFVTC--DVPPKVLVCTHLTELLN 672 (792)
Q Consensus 630 DE~~-----~-gt~~~~~~~l~~~~~~~l~~~--~~~~~~l~~TH~~~l~~ 672 (792)
||+- + +........+...++..+-.. .....+|.+|+..+..+
T Consensus 304 DEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld 354 (489)
T 3hu3_A 304 DELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (489)
T ss_dssp ESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBC
T ss_pred cchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccC
Confidence 9981 1 111122233334455544421 22456777898876544
No 234
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.29 E-value=0.0087 Score=57.88 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=22.2
Q ss_pred eeecCC-CcEEEEEcCCCCCchhHHHHHHH
Q 043119 546 TRIDND-GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 546 ~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+++... +..++|+|+.||||||+.+.++-
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 455555 77899999999999999997653
No 235
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.28 E-value=0.031 Score=59.53 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFL 578 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~l 578 (792)
|.+++|.|++|+|||||+.+++..+..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~ 72 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN 72 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999877655
No 236
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.28 E-value=0.0071 Score=58.80 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCchhHHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
.++|+||||+|||||++.++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6799999999999999987643
No 237
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.24 E-value=0.007 Score=59.40 Aligned_cols=24 Identities=25% Similarity=0.138 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
..+++|+||+||||||+.+.++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999987644
No 238
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.23 E-value=0.0037 Score=63.84 Aligned_cols=35 Identities=26% Similarity=0.154 Sum_probs=29.4
Q ss_pred ceeccceeecCC----CcEEEEEcCCCCCchhHHHHHHH
Q 043119 540 TFIPNDTRIDND----GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 540 ~~v~n~~~~~~~----~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
..+.+++++... +++++|+||+||||||+.|.++.
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 346678888764 78999999999999999998875
No 239
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.22 E-value=0.0047 Score=59.22 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCchhHHHHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
++++|+||+||||||+++.++...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999887554
No 240
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.21 E-value=0.045 Score=56.31 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCchhHHHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
..++|+||.|+||||+.+.++..
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 36789999999999999988764
No 241
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.20 E-value=0.0076 Score=59.35 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+.+++|+||+||||||+.+.++-
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999998753
No 242
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.18 E-value=0.0081 Score=58.67 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCchhHHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
-++|+||||+|||||++.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999988653
No 243
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.13 E-value=0.042 Score=66.44 Aligned_cols=111 Identities=15% Similarity=0.152 Sum_probs=51.6
Q ss_pred EEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCC--ceeeecccccchhh---ccchhHHHHHHHHHHHHhCCCCeEEE
Q 043119 554 INIITGPNYSGKSIYIKQVALIVFLSHIGSFVPAD--AATVGLTDSKHMTA---EQSSFMIDLHQVGMMLRQATSQSLCL 628 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~--~~~~~~~~~~~~~~---~~s~f~~e~~~~~~~l~~~~~~slvl 628 (792)
.++|+||+|+||||+++.++....-. .+|.. ...+-.++...+.. ....|...+.++...+.....+.+++
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l~~~----~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 268 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRIVKG----DVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILF 268 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHHT----CSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEE
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhcC----CCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEE
Confidence 46899999999999999988654322 12221 22222222111111 12233333444433343345678999
Q ss_pred EeCCCCCC---CHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhh
Q 043119 629 LDEFGKGT---LTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTEL 670 (792)
Q Consensus 629 lDE~~~gt---~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l 670 (792)
+||+-.=. +...+..+. .++..+.+.+ ...+|.+|...+.
T Consensus 269 IDEi~~l~~~~~~~g~~~~~-~~L~~~l~~~-~i~~I~at~~~~~ 311 (854)
T 1qvr_A 269 IDELHTVVGAGKAEGAVDAG-NMLKPALARG-ELRLIGATTLDEY 311 (854)
T ss_dssp ECCC--------------------HHHHHTT-CCCEEEEECHHHH
T ss_pred EecHHHHhccCCccchHHHH-HHHHHHHhCC-CeEEEEecCchHH
Confidence 99985422 111123332 2344444443 4567777776654
No 244
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.03 E-value=0.034 Score=58.95 Aligned_cols=27 Identities=19% Similarity=0.131 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFL 578 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~l 578 (792)
|+++.|+||+|+|||||..+++..+.+
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l 124 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQN 124 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 789999999999999999999876544
No 245
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.03 E-value=0.1 Score=57.02 Aligned_cols=109 Identities=17% Similarity=0.112 Sum_probs=58.3
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhccchhHHHH-HHHHHHHH--hCCCCeEEE
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDL-HQVGMMLR--QATSQSLCL 628 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~~s~f~~e~-~~~~~~l~--~~~~~slvl 628 (792)
.+-+++.||.|+|||.+.|++|.- .|.++ ..+.. ++. .|.+.+|- ..+..+.. ....|++|+
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e-----~~~~f----i~v~~--s~l----~sk~vGesek~ir~lF~~Ar~~aP~IIf 280 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQ-----TSATF----LRIVG--SEL----IQKYLGDGPRLCRQIFKVAGENAPSIVF 280 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHH-----HTCEE----EEEES--GGG----CCSSSSHHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCCceECCCCchHHHHHHHHHHH-----hCCCE----EEEEH--HHh----hhccCchHHHHHHHHHHHHHhcCCcEEE
Confidence 357899999999999999988743 33221 11111 111 12222222 12222222 236789999
Q ss_pred EeCCCCCC-------C--HHHHHHHHHHHHHHHHh--CCCCcEEEEEccChhhhhcCC
Q 043119 629 LDEFGKGT-------L--TEDGIGLLGGTINYFVT--CDVPPKVLVCTHLTELLNEGC 675 (792)
Q Consensus 629 lDE~~~gt-------~--~~~~~~l~~~~~~~l~~--~~~~~~~l~~TH~~~l~~~~~ 675 (792)
+||+-+-. + ..+.......++..+-. ...+..+|.||..++.++...
T Consensus 281 iDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpAL 338 (437)
T 4b4t_I 281 IDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPAL 338 (437)
T ss_dssp EEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTS
T ss_pred EehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHH
Confidence 99975311 1 11222222344444432 122557888999999877543
No 246
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.03 E-value=0.028 Score=62.56 Aligned_cols=24 Identities=38% Similarity=0.319 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
.+-++|+||.|+|||++.+.++.-
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999988753
No 247
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.00 E-value=0.031 Score=61.55 Aligned_cols=30 Identities=23% Similarity=0.363 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCc
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGS 583 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~ 583 (792)
..+++++||+|+||||++..++. .+++-|.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~--~l~~~G~ 129 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLAR--YFQKRGY 129 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH--HHHTTTC
T ss_pred CeEEEEECcCCCCHHHHHHHHHH--HHHHCCC
Confidence 46899999999999999987774 3444453
No 248
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.00 E-value=0.0041 Score=65.43 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
|++++|+||||+|||||++.++.
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHhcc
Confidence 78999999999999999998753
No 249
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.94 E-value=0.13 Score=56.71 Aligned_cols=107 Identities=15% Similarity=0.101 Sum_probs=56.9
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhccchhHHHH-HHHHHHHH--hCCCCeEEE
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDL-HQVGMMLR--QATSQSLCL 628 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~~s~f~~e~-~~~~~~l~--~~~~~slvl 628 (792)
.+-++|.||.|+|||++.|++|. ..|+++ ..+.. ++ -.|.+.+|- +.+..+.. ....|++++
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~-----e~~~~f----i~vs~--s~----L~sk~vGesek~ir~lF~~Ar~~aP~IIf 307 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVAN-----RTDATF----IRVIG--SE----LVQKYVGEGARMVRELFEMARTKKACIIF 307 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHH-----HHTCEE----EEEEG--GG----GCCCSSSHHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCceEeeCCCCCcHHHHHHHHHh-----ccCCCe----EEEEh--HH----hhcccCCHHHHHHHHHHHHHHhcCCceEe
Confidence 35789999999999999998874 333321 11111 11 112222221 12222322 236789999
Q ss_pred EeCCCCCCC-------HH--HHHHHHHHHHHHHHhC--CCCcEEEEEccChhhhhc
Q 043119 629 LDEFGKGTL-------TE--DGIGLLGGTINYFVTC--DVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 629 lDE~~~gt~-------~~--~~~~l~~~~~~~l~~~--~~~~~~l~~TH~~~l~~~ 673 (792)
+||+-.-.. .. ........++..+-.. ..+..+|.||..++.++.
T Consensus 308 iDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDp 363 (467)
T 4b4t_H 308 FDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDP 363 (467)
T ss_dssp EECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCH
T ss_pred ecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCCh
Confidence 999864321 11 1122222344444221 124577889998887764
No 250
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.87 E-value=0.1 Score=55.48 Aligned_cols=111 Identities=7% Similarity=-0.015 Sum_probs=58.9
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCcee------------eecccccchhhccchhHHHHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAAT------------VGLTDSKHMTAEQSSFMIDLHQVGMMLR 619 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~------------~~~~~~~~~~~~~s~f~~e~~~~~~~l~ 619 (792)
...++++||.|.||||+.+.++-...-.......||.... +..++... .+...-..+++++..-+.
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~--~~~~~~i~~ir~l~~~~~ 101 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK--GKNTLGVDAVREVTEKLN 101 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT--TCSSBCHHHHHHHHHHTT
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc--cCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999887544321111112322210 11111100 011122234444433332
Q ss_pred h---CCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChh
Q 043119 620 Q---ATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTE 669 (792)
Q Consensus 620 ~---~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~ 669 (792)
. ..++.++|+||.-+=+. . + +.++++.+-+...++.+|++|++.+
T Consensus 102 ~~~~~~~~kvviIdead~l~~-~---a-~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 102 EHARLGGAKVVWVTDAALLTD-A---A-ANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SCCTTSSCEEEEESCGGGBCH-H---H-HHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred hccccCCcEEEEECchhhcCH-H---H-HHHHHHHhcCCCCCeEEEEEeCChH
Confidence 2 13679999999765432 1 1 2456666655333466778888865
No 251
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.82 E-value=0.011 Score=57.01 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.9
Q ss_pred CcEEEEEcCCCCCchhHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~ 573 (792)
|.+++|+||+||||||+.+.++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999999876
No 252
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.79 E-value=0.014 Score=56.34 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
+.+++|+|++||||||+.+.++..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999988754
No 253
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.77 E-value=0.12 Score=56.25 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
.+-++|+||.|+|||++.+.++-
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998853
No 254
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.72 E-value=0.069 Score=56.73 Aligned_cols=63 Identities=14% Similarity=0.258 Sum_probs=38.4
Q ss_pred EEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeCCC
Q 043119 554 INIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFG 633 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~~ 633 (792)
.++|+||.|+||||+.+.++-. .|..+. . ++.... . ....+..++.....+.+++|||+.
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~-----~~~~~~----~---~~~~~~-~-------~~~~~~~~~~~~~~~~vl~lDEi~ 116 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYE-----MSANIK----T---TAAPMI-E-------KSGDLAAILTNLSEGDILFIDEIH 116 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH-----TTCCEE----E---EEGGGC-C-------SHHHHHHHHHTCCTTCEEEEETGG
T ss_pred eEEEECcCCCCHHHHHHHHHHH-----hCCCeE----E---ecchhc-c-------chhHHHHHHHhccCCCEEEEechh
Confidence 5789999999999999988533 222110 0 000000 0 112334455556788999999988
Q ss_pred CCC
Q 043119 634 KGT 636 (792)
Q Consensus 634 ~gt 636 (792)
.-.
T Consensus 117 ~l~ 119 (338)
T 3pfi_A 117 RLS 119 (338)
T ss_dssp GCC
T ss_pred hcC
Confidence 654
No 255
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.66 E-value=0.01 Score=67.73 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
|.+++|+|+|||||||++|.++...
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhh
Confidence 6799999999999999999987654
No 256
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.63 E-value=0.026 Score=52.12 Aligned_cols=23 Identities=9% Similarity=0.005 Sum_probs=19.3
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+.-++|+||.|+|||++.|.++.
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999998753
No 257
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.51 E-value=0.018 Score=57.88 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
|.+++|.||+||||||+++.++..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999988753
No 258
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.46 E-value=0.017 Score=54.66 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCchhHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~ 573 (792)
+++|+||.||||||+.+.++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999765
No 259
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.41 E-value=0.054 Score=57.21 Aligned_cols=96 Identities=16% Similarity=0.178 Sum_probs=50.6
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhccchhHHHHHH-HHHHHHhC---CCCeEE
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDLHQ-VGMMLRQA---TSQSLC 627 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~~s~f~~e~~~-~~~~l~~~---~~~slv 627 (792)
...+++.||.|+||||+.+.++--. |..+ ..+...+ .+ ...+.+ +....... .++.++
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l-----~~~~----~~i~~~~-----~~----~~~i~~~~~~~~~~~~~~~~~~vl 109 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDV-----NADM----MFVNGSD-----CK----IDFVRGPLTNFASAASFDGRQKVI 109 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHT-----TEEE----EEEETTT-----CC----HHHHHTHHHHHHHBCCCSSCEEEE
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHh-----CCCE----EEEcccc-----cC----HHHHHHHHHHHHhhcccCCCCeEE
Confidence 3578899999999999999886332 2111 1111000 00 112222 11222222 378999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChh
Q 043119 628 LLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTE 669 (792)
Q Consensus 628 llDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~ 669 (792)
++||+..=+......++ ..+++.... +..+|++|....
T Consensus 110 iiDEi~~l~~~~~~~~L-~~~le~~~~---~~~iI~~~n~~~ 147 (324)
T 3u61_B 110 VIDEFDRSGLAESQRHL-RSFMEAYSS---NCSIIITANNID 147 (324)
T ss_dssp EEESCCCGGGHHHHHHH-HHHHHHHGG---GCEEEEEESSGG
T ss_pred EEECCcccCcHHHHHHH-HHHHHhCCC---CcEEEEEeCCcc
Confidence 99998765422222222 234443322 356788887765
No 260
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.33 E-value=0.055 Score=56.94 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCchhHHHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
.++|+||.|+||||+.+.++-..
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999887543
No 261
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.33 E-value=0.095 Score=58.18 Aligned_cols=92 Identities=12% Similarity=0.100 Sum_probs=46.6
Q ss_pred cEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeCC
Q 043119 553 RINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEF 632 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~ 632 (792)
..++|+||.|+||||+.+.++... +.. ...+.... .+.... .+....+.-......+.++++||+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~-----~~~----f~~l~a~~-----~~~~~i-r~~~~~a~~~~~~~~~~iLfIDEI 115 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA-----NAD----VERISAVT-----SGVKEI-REAIERARQNRNAGRRTILFVDEV 115 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT-----TCE----EEEEETTT-----CCHHHH-HHHHHHHHHHHHTTCCEEEEEETT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh-----CCC----eEEEEecc-----CCHHHH-HHHHHHHHHhhhcCCCcEEEEeCh
Confidence 368999999999999999887532 211 11111111 011111 111111111122457899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEcc
Q 043119 633 GKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTH 666 (792)
Q Consensus 633 ~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH 666 (792)
.+=+.. . ..+++..+-+. ..++|.+|.
T Consensus 116 ~~l~~~-~----q~~LL~~le~~--~v~lI~att 142 (447)
T 3pvs_A 116 HRFNKS-Q----QDAFLPHIEDG--TITFIGATT 142 (447)
T ss_dssp TCC-----------CCHHHHHTT--SCEEEEEES
T ss_pred hhhCHH-H----HHHHHHHHhcC--ceEEEecCC
Confidence 765432 1 12345555442 456666664
No 262
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.30 E-value=0.015 Score=59.61 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCCchhHHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
..++|+||.|+|||++.|.++.
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHY 51 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHHHH
Confidence 4678999999999999998864
No 263
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=94.30 E-value=0.038 Score=59.41 Aligned_cols=6 Identities=50% Similarity=0.362 Sum_probs=2.9
Q ss_pred eeeccc
Q 043119 591 TVGLTD 596 (792)
Q Consensus 591 ~~~~~~ 596 (792)
.+-++|
T Consensus 294 ~iLLLD 299 (359)
T 2o5v_A 294 PVLLLD 299 (359)
T ss_dssp CEEEEC
T ss_pred CEEEEe
Confidence 344555
No 264
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=94.29 E-value=0.055 Score=63.35 Aligned_cols=104 Identities=15% Similarity=0.072 Sum_probs=57.6
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHH-hhcCc-----ccc--------------CCce-------eeecccccchhhcc
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFL-SHIGS-----FVP--------------ADAA-------TVGLTDSKHMTAEQ 604 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~l-aq~g~-----~vp--------------a~~~-------~~~~~~~~~~~~~~ 604 (792)
++.++|+|+||+|||||++.+...... ...|. .+. .... .+.+.| +.+.
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliD----TpG~ 84 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLD----APGY 84 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEE----CCCS
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEe----CCCc
Confidence 678999999999999999988744321 11111 110 0000 011111 1244
Q ss_pred chhHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhh
Q 043119 605 SSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELL 671 (792)
Q Consensus 605 s~f~~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~ 671 (792)
..|..++.+. +. ..+.-++++| +..|.++.... +++.+... +..++++.|-.++.
T Consensus 85 ~~f~~~~~~~---l~-~ad~~ilVvD-~~~g~~~qt~~-----~~~~~~~~--~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 85 GDFVGEIRGA---LE-AADAALVAVS-AEAGVQVGTER-----AWTVAERL--GLPRMVVVTKLDKG 139 (665)
T ss_dssp GGGHHHHHHH---HH-HCSEEEEEEE-TTTCSCHHHHH-----HHHHHHHT--TCCEEEEEECGGGC
T ss_pred cchHHHHHHH---Hh-hcCcEEEEEc-CCcccchhHHH-----HHHHHHHc--cCCEEEEecCCchh
Confidence 5566554433 32 2446788889 99998876542 23333333 23456667777764
No 265
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.28 E-value=0.022 Score=56.81 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=29.8
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccCh
Q 043119 622 TSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLT 668 (792)
Q Consensus 622 ~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~ 668 (792)
..++++|+||+|.-..+..+.++.++.+..+... +.-++.++|..
T Consensus 83 ~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~s--gidVitT~Nlq 127 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAA--GIDVYTTVNVQ 127 (228)
T ss_dssp HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHT--TCEEEEEEEGG
T ss_pred cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcC--CCCEEEEcccc
Confidence 3689999999997545544445555556566664 45677777743
No 266
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.23 E-value=0.019 Score=58.69 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCchhHHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
.+++|+||+||||||+-+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 3689999999999999998864
No 267
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.09 E-value=0.062 Score=49.44 Aligned_cols=88 Identities=10% Similarity=-0.003 Sum_probs=46.2
Q ss_pred cEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeCC
Q 043119 553 RINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEF 632 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~ 632 (792)
.-++|+||.|+|||++.|.++.. .. .+-.++........ ....+..+. +..+++||+
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~------~~-------~~~~~~~~~~~~~~---------~~~~~~~a~-~~~l~lDei 84 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN------GT-------PWVSPARVEYLIDM---------PMELLQKAE-GGVLYVGDI 84 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT------TS-------CEECCSSTTHHHHC---------HHHHHHHTT-TSEEEEEEC
T ss_pred CcEEEECCCCccHHHHHHHHHHh------CC-------CeEEechhhCChHh---------hhhHHHhCC-CCeEEEeCh
Confidence 35789999999999999965421 11 11112211111110 223333343 578999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccC
Q 043119 633 GKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHL 667 (792)
Q Consensus 633 ~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~ 667 (792)
..= ++.....+. .+++.-.. .+..+|++|..
T Consensus 85 ~~l-~~~~q~~Ll-~~l~~~~~--~~~~iI~~tn~ 115 (143)
T 3co5_A 85 AQY-SRNIQTGIT-FIIGKAER--CRVRVIASCSY 115 (143)
T ss_dssp TTC-CHHHHHHHH-HHHHHHTT--TTCEEEEEEEE
T ss_pred HHC-CHHHHHHHH-HHHHhCCC--CCEEEEEecCC
Confidence 865 333333443 23333221 24567777763
No 268
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.09 E-value=0.15 Score=53.33 Aligned_cols=114 Identities=14% Similarity=0.189 Sum_probs=57.8
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHh---hcCccccCCcee-------eecccccchhhccchhHHHH-HHHHHHHH-
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLS---HIGSFVPADAAT-------VGLTDSKHMTAEQSSFMIDL-HQVGMMLR- 619 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~la---q~g~~vpa~~~~-------~~~~~~~~~~~~~s~f~~e~-~~~~~~l~- 619 (792)
| ++.|.||.|+|||||+-+++...... ....|+.++... +++-..+.......+ ..++ .++...+.
T Consensus 29 G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~-~E~~~l~i~~~l~~ 106 (333)
T 3io5_A 29 G-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQS-LEQLRIDMVNQLDA 106 (333)
T ss_dssp E-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSB-HHHHHHHHHHHHHT
T ss_pred C-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCC-HHHHHHHHHHHHHH
Confidence 6 88999999999999988776544332 122355444321 111001111111111 2233 34444442
Q ss_pred -hCCCCeEEEEeCCCCCCCH--H-------------HHHHHHHHHHHH---HHhCCCCcEEEEEccChh
Q 043119 620 -QATSQSLCLLDEFGKGTLT--E-------------DGIGLLGGTINY---FVTCDVPPKVLVCTHLTE 669 (792)
Q Consensus 620 -~~~~~slvllDE~~~gt~~--~-------------~~~~l~~~~~~~---l~~~~~~~~~l~~TH~~~ 669 (792)
....+++|++|-+..=... . ....++ ..+.. ++++ .++++|++-|-..
T Consensus 107 i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s-~~LrkL~~~ak~-~~i~vi~tNQV~k 173 (333)
T 3io5_A 107 IERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMK-SLFRIVTPYFST-KNIPCIAINHTYE 173 (333)
T ss_dssp CCTTCCEEEEEECSTTCBCC--------------CTHHHHHH-HHHHHHHHHHHH-TTCEEEEEEEC--
T ss_pred hhccCceEEEEecccccccchhccCccccccccHHHHHHHHH-HHHHHHHHHHHH-hCCEEEEECCeee
Confidence 2357899999988765421 1 111222 22222 2333 2689999998866
No 269
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.06 E-value=0.023 Score=56.12 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
+.+++|+|++||||||+.+.++..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 779999999999999999988654
No 270
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.01 E-value=0.03 Score=67.09 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
++.++|+||+|+||||+.|.++...
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred CceeEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999999998654
No 271
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.00 E-value=0.018 Score=61.65 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
+.+++|+|+||+||||+++.++...
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999887554
No 272
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.99 E-value=0.025 Score=54.22 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCchhHHHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
.+++|+||+||||||+++.+...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 58899999999999999987643
No 273
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.97 E-value=0.026 Score=53.84 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.7
Q ss_pred CcEEEEEcCCCCCchhHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~ 573 (792)
+.+++|+||.||||||+.|.++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La 24 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQ 24 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999875
No 274
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.95 E-value=0.025 Score=56.96 Aligned_cols=23 Identities=39% Similarity=0.340 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+.+++|+|++||||||+.+.++.
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999997764
No 275
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.93 E-value=0.14 Score=53.82 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCchhHHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
..++|+||.|+||||+++.++-
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999998875
No 276
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.92 E-value=0.09 Score=58.37 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFL 578 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~l 578 (792)
|.+++|+|+.|+|||||+.+++..+..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999887654
No 277
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.82 E-value=0.027 Score=55.80 Aligned_cols=23 Identities=35% Similarity=0.183 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+.+++|+|+.||||||+.+.++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998764
No 278
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.82 E-value=0.024 Score=54.03 Aligned_cols=21 Identities=29% Similarity=0.191 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
.++|+||+||||||+.|.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999998863
No 279
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.82 E-value=0.027 Score=53.71 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCchhHHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
.+++|+||.||||||+.+.++-
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999998764
No 280
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.79 E-value=0.03 Score=53.97 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+.+++|+||.||||||+.+.++-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998764
No 281
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=93.75 E-value=0.025 Score=59.57 Aligned_cols=23 Identities=17% Similarity=0.301 Sum_probs=19.8
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
...++|+||.|+|||++.|.++-
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEEEECCCCchHHHHHHHHHH
Confidence 34678999999999999998864
No 282
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.73 E-value=0.031 Score=58.31 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=19.8
Q ss_pred CcEEEEEcCCCCCchhHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~ 573 (792)
+.+++|+||+||||||+.+.++
T Consensus 33 ~~livl~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999999775
No 283
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.70 E-value=0.024 Score=57.89 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+.+++|+||+||||||+.+.++.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998764
No 284
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.69 E-value=0.032 Score=58.27 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
+.+++|+||.||||||+.+.++...
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999886544
No 285
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.65 E-value=0.03 Score=60.14 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
+.+++|+||+|+|||||++.++..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 358899999999999999988764
No 286
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.59 E-value=0.031 Score=53.94 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+.+++|+|+.||||||+.+.++-
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998763
No 287
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.56 E-value=0.21 Score=63.66 Aligned_cols=84 Identities=21% Similarity=0.250 Sum_probs=45.6
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhh-cCccccCCcee-------eecccccchhhccchhHHHHHHHHHHHHhCCC
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSH-IGSFVPADAAT-------VGLTDSKHMTAEQSSFMIDLHQVGMMLRQATS 623 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq-~g~~vpa~~~~-------~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~~~ 623 (792)
|++++|.||+|+|||||+.+++..+.... .-.|+..+... +++-..+.......+ ..++.+...-+.....
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~-leei~~~l~~lv~~~~ 810 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT-GEQALEICDALARSGA 810 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSS-HHHHHHHHHHHHHHTC
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCc-HHHHHHHHHHHHHccC
Confidence 78999999999999999999987654321 11233333221 110000000001112 1233333322222357
Q ss_pred CeEEEEeCCCCCC
Q 043119 624 QSLCLLDEFGKGT 636 (792)
Q Consensus 624 ~slvllDE~~~gt 636 (792)
+++|++|++..=.
T Consensus 811 ~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 811 VDVIVVDSVAALT 823 (1706)
T ss_dssp CSEEEESCSTTCC
T ss_pred CCEEEEechhhhc
Confidence 8999999998654
No 288
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=93.53 E-value=0.032 Score=60.71 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
+..++|+|+||+||||+++++...
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 678999999999999999998763
No 289
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.52 E-value=0.21 Score=59.13 Aligned_cols=105 Identities=16% Similarity=0.212 Sum_probs=56.9
Q ss_pred cEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeeccc-ccchhhccchhHHHH-HHHHHHHHh--CCCCeEEE
Q 043119 553 RINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD-SKHMTAEQSSFMIDL-HQVGMMLRQ--ATSQSLCL 628 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~-~~~~~~~~s~f~~e~-~~~~~~l~~--~~~~slvl 628 (792)
+-++|.||.|+|||++.|++|. ..|.++ -.++ .+. .|.+..|- ..+..++.. ...|++++
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~-----elg~~~-------~~v~~~~l----~sk~~gese~~lr~lF~~A~~~~PsIIf 302 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVAN-----ETGAFF-------FLINGPEI----MSKLAGESESNLRKAFEEAEKNAPAIIF 302 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHT-----TTTCEE-------EEEEHHHH----HSSCTTHHHHHHHHHHHHHTTSCSEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHH-----HhCCeE-------EEEEhHHh----hcccchHHHHHHHHHHHHHHHcCCeEEE
Confidence 5689999999999999998872 344321 1112 111 12222221 223334433 36789999
Q ss_pred EeCCCCC------CCHHHHHHHHHHHHHHHH---hCCCCcEEEEEccChhhhhcC
Q 043119 629 LDEFGKG------TLTEDGIGLLGGTINYFV---TCDVPPKVLVCTHLTELLNEG 674 (792)
Q Consensus 629 lDE~~~g------t~~~~~~~l~~~~~~~l~---~~~~~~~~l~~TH~~~l~~~~ 674 (792)
+||+-.= ++......+...++..+- +. .+..+|.+|...+.++..
T Consensus 303 IDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~-~~V~VIaaTN~~d~LD~A 356 (806)
T 3cf2_A 303 IDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR-AHVIVMAATNRPNSIDPA 356 (806)
T ss_dssp EESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGG-GCEEEEEECSSTTTSCTT
T ss_pred EehhcccccccCCCCChHHHHHHHHHHHHHhccccc-CCEEEEEecCChhhcCHH
Confidence 9997431 111112223333443332 22 245778899988876543
No 290
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.47 E-value=0.031 Score=54.15 Aligned_cols=20 Identities=40% Similarity=0.687 Sum_probs=17.9
Q ss_pred cEEEEEcCCCCCchhHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQV 572 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i 572 (792)
|.++|+||.|+||||+++.+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L 21 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKL 21 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 56899999999999999964
No 291
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.47 E-value=0.13 Score=53.91 Aligned_cols=102 Identities=11% Similarity=0.064 Sum_probs=57.9
Q ss_pred cEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhccchhHHHHHHHHHHHHhC---CCCeEEEE
Q 043119 553 RINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQA---TSQSLCLL 629 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~---~~~slvll 629 (792)
..++++||.|.||||+.+.++-- +|. .......+-.++. .+.+.-..+++++..-+... .+..++|+
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~-----~~~-~~~~~~d~~~l~~----~~~~~~id~ir~li~~~~~~p~~~~~kvviI 88 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEY-----VEK-FPPKASDVLEIDP----EGENIGIDDIRTIKDFLNYSPELYTRKYVIV 88 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH-----HHT-SCCCTTTEEEECC----SSSCBCHHHHHHHHHHHTSCCSSSSSEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHh-----Cch-hhccCCCEEEEcC----CcCCCCHHHHHHHHHHHhhccccCCceEEEe
Confidence 47899999999999999987642 110 0011111111221 01122233455544444322 35789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChh
Q 043119 630 DEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTE 669 (792)
Q Consensus 630 DE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~ 669 (792)
||.-+=|.. + +.++++++-+-...+.+|++|++..
T Consensus 89 dead~lt~~----a-~naLLk~LEep~~~t~fIl~t~~~~ 123 (305)
T 2gno_A 89 HDCERMTQQ----A-ANAFLKALEEPPEYAVIVLNTRRWH 123 (305)
T ss_dssp TTGGGBCHH----H-HHHTHHHHHSCCTTEEEEEEESCGG
T ss_pred ccHHHhCHH----H-HHHHHHHHhCCCCCeEEEEEECChH
Confidence 998765432 1 3556777665433567788888864
No 292
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.47 E-value=0.21 Score=50.07 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFL 578 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~l 578 (792)
|.+++|.|+.|+|||||.-+++.....
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~ 56 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAE 56 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999998765443
No 293
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.46 E-value=0.032 Score=52.60 Aligned_cols=20 Identities=40% Similarity=0.514 Sum_probs=18.1
Q ss_pred cEEEEEcCCCCCchhHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQV 572 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i 572 (792)
.+++|+||.||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999976
No 294
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.43 E-value=0.046 Score=57.22 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 551 DGRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 551 ~~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
.+++++++||||+||||++..++...
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999887554
No 295
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.13 E-value=0.04 Score=52.67 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=15.7
Q ss_pred CcEEEEEcCCCCCchhHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~ 573 (792)
+.+++|+|+.||||||+.+.++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999775
No 296
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.12 E-value=0.055 Score=56.71 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.6
Q ss_pred EEEEcCCCCCchhHHHHHHHHH
Q 043119 555 NIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 555 ~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
++|+||.|+||||+.+.++-..
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHh
Confidence 8999999999999999887543
No 297
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.01 E-value=0.045 Score=52.80 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=19.5
Q ss_pred CcEEEEEcCCCCCchhHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~ 573 (792)
+.+++|+|+.||||||+.+.++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3588999999999999999765
No 298
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.00 E-value=0.041 Score=52.64 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=19.7
Q ss_pred CcEEEEEcCCCCCchhHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~ 573 (792)
+.+++|+||.||||||+.+.++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 5678999999999999999776
No 299
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.98 E-value=0.042 Score=51.66 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
.++|+|++|+||||+++.+..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999998764
No 300
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.96 E-value=0.045 Score=53.29 Aligned_cols=21 Identities=24% Similarity=0.161 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+++|+|+.||||||+.+.++-
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 679999999999999998764
No 301
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.94 E-value=0.21 Score=52.25 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=19.5
Q ss_pred EEEEcCCCCCchhHHHHHHHHH
Q 043119 555 NIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 555 ~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
++|+||.|+||||+.+.++-..
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8999999999999999887543
No 302
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.86 E-value=0.051 Score=52.85 Aligned_cols=23 Identities=35% Similarity=0.102 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
..+++|+|+.||||||+.+.++-
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999997764
No 303
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.82 E-value=0.14 Score=61.97 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCchhHHHHHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVALIVF 577 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~~~~ 577 (792)
..++|+||+|+|||++.|.++....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4789999999999999999886553
No 304
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=92.70 E-value=0.091 Score=58.77 Aligned_cols=99 Identities=19% Similarity=0.179 Sum_probs=47.4
Q ss_pred cEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCcee--eecccccchhhccchhHHHHHHHHHHHHhCCCCeEEEEe
Q 043119 553 RINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAAT--VGLTDSKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLD 630 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~--~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllD 630 (792)
.-++|+||+|+||||+.+.++....-+ .+|..-.. +-.+|.. ......|...+..+-..+.. ..+.++++|
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l~~~----~~p~~l~~~~~~~l~~~--~~~~g~~e~~~~~~~~~~~~-~~~~iLfiD 274 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQIINN----EVPEILRDKRVMTLDMG--TKYRGEFEDRLKKVMDEIRQ-AGNIILFID 274 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHHSS----CSCTTTSSCCEECC------------CTTHHHHHHHHHT-CCCCEEEEC
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHhC----CCChhhcCCeEEEeeCC--ccccchHHHHHHHHHHHHHh-cCCeEEEEe
Confidence 346899999999999999888654322 34533221 2112211 11111122222233222222 467899999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChh
Q 043119 631 EFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTE 669 (792)
Q Consensus 631 E~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~ 669 (792)
|+. +. . ..+....+.+ ...+|.+|...+
T Consensus 275 ----~~~--~a---~-~~L~~~L~~g-~v~vI~at~~~e 302 (468)
T 3pxg_A 275 ----AAI--DA---S-NILKPSLARG-ELQCIGATTLDE 302 (468)
T ss_dssp ----C--------------CCCTTSS-SCEEEEECCTTT
T ss_pred ----Cch--hH---H-HHHHHhhcCC-CEEEEecCCHHH
Confidence 221 21 1 2222223333 467888888766
No 305
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.69 E-value=0.05 Score=54.69 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
..+++|+||+||||||+.+.++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999998763
No 306
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.63 E-value=0.35 Score=46.85 Aligned_cols=103 Identities=18% Similarity=0.176 Sum_probs=53.4
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCc--cccCCceeeeccc--ccc-h---hhccchhHHHHHHHHHHHHhCC-
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGS--FVPADAATVGLTD--SKH-M---TAEQSSFMIDLHQVGMMLRQAT- 622 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~--~vpa~~~~~~~~~--~~~-~---~~~~s~f~~e~~~~~~~l~~~~- 622 (792)
|++.+++||-|+||||.+-.++.-..-+..-. +-|+...+.+... ++. + ....+.. ..++..+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~-------~~i~~~~~~ 80 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNS-------REILKYFEE 80 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSS-------THHHHHCCT
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCH-------HHHHHHHhc
Confidence 78999999999999998887665543332211 1122221111000 110 0 0011111 13333333
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChh
Q 043119 623 SQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTE 669 (792)
Q Consensus 623 ~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~ 669 (792)
+.++|++||.-- .++.. + ..++.+... +..+|++.++.+
T Consensus 81 ~~dvViIDEaqf-l~~~~---v--~~l~~l~~~--~~~Vi~~Gl~~d 119 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDEI---V--EIVNKIAES--GRRVICAGLDMD 119 (191)
T ss_dssp TCSEEEECSGGG-SCTHH---H--HHHHHHHHT--TCEEEEEECSBC
T ss_pred cCCEEEEECCCC-CCHHH---H--HHHHHHHhC--CCEEEEEecccc
Confidence 469999999544 44322 2 245666654 567888888553
No 307
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.61 E-value=0.38 Score=61.34 Aligned_cols=114 Identities=17% Similarity=0.156 Sum_probs=61.9
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHh-hcCccccCCceeeecc------cccchhhccchhHHHHHHHHHHHHhCCCC
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLS-HIGSFVPADAATVGLT------DSKHMTAEQSSFMIDLHQVGMMLRQATSQ 624 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~la-q~g~~vpa~~~~~~~~------~~~~~~~~~s~f~~e~~~~~~~l~~~~~~ 624 (792)
++++.|+||.|+|||+|..+++...... .-..|+..+...-... |.+.+..-......++.++...+....+.
T Consensus 34 G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L~~~~~~ 113 (1706)
T 3cmw_A 34 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 113 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHHHhccCC
Confidence 7899999999999999999998765543 2233444433210000 00000000001123344444444334678
Q ss_pred eEEEEeCCCCCCCHHH----------------HHHHHHHHHHHHHhCCCCcEEEEEccC
Q 043119 625 SLCLLDEFGKGTLTED----------------GIGLLGGTINYFVTCDVPPKVLVCTHL 667 (792)
Q Consensus 625 slvllDE~~~gt~~~~----------------~~~l~~~~~~~l~~~~~~~~~l~~TH~ 667 (792)
++|++|+++.=....+ ...+...+...+.+. ++++|++.|-
T Consensus 114 ~LVVIDSLt~L~~~~e~e~~~~~~~~~~~~r~~~~ll~~L~~~ake~--~~tVIvTNqv 170 (1706)
T 3cmw_A 114 DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS--NTLLIFINQI 170 (1706)
T ss_dssp SEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHH--TCEEEEEECE
T ss_pred CEEEEcchhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHc--CCEEEEEeec
Confidence 9999999987655431 123334444545454 5677777664
No 308
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.60 E-value=0.063 Score=58.97 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 551 DGRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 551 ~~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
.+++++++||||+||||++..++...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999887554
No 309
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.49 E-value=0.16 Score=53.63 Aligned_cols=27 Identities=15% Similarity=0.075 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFL 578 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~l 578 (792)
|.+++|.|+.|+|||||+.+++..+..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~ 94 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSD 94 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 889999999999999999999876544
No 310
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.40 E-value=0.055 Score=51.77 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|++|+||||+++.+..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999998754
No 311
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.36 E-value=0.06 Score=52.01 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+.+++|+||.||||||+.+.++-
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998763
No 312
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.35 E-value=0.061 Score=52.65 Aligned_cols=23 Identities=26% Similarity=0.186 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+.+++|+||.||||||+.+.++-
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999998764
No 313
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.35 E-value=0.18 Score=60.04 Aligned_cols=112 Identities=17% Similarity=0.189 Sum_probs=56.5
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCC--ceeeeccc-ccch--hhccchhHHHHHHHHHHHHhCCCCeE
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPAD--AATVGLTD-SKHM--TAEQSSFMIDLHQVGMMLRQATSQSL 626 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~--~~~~~~~~-~~~~--~~~~s~f~~e~~~~~~~l~~~~~~sl 626 (792)
+.-++|+||.|+||||+.+.++....-. .+|.. ...+-..+ .... ......|...+..+...+.. ..+.+
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~l~~~----~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~-~~~~i 281 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWRIVQG----DVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ-DTNSI 281 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHHHT----CSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSS-SSCEE
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHhC----CCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHh-cCCeE
Confidence 4567899999999999999888654322 13321 11221122 1111 11123344444433333322 24799
Q ss_pred EEEeCCCCC----CCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhh
Q 043119 627 CLLDEFGKG----TLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTEL 670 (792)
Q Consensus 627 vllDE~~~g----t~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l 670 (792)
+++||+-.= .......... .++..+.+.+ ...+|.+|...+.
T Consensus 282 L~IDEi~~l~~~~~~~~~~~~~~-~~L~~~l~~~-~~~~I~at~~~~~ 327 (758)
T 1r6b_X 282 LFIDEIHTIIGAGAASGGQVDAA-NLIKPLLSSG-KIRVIGSTTYQEF 327 (758)
T ss_dssp EEETTTTTTTTSCCSSSCHHHHH-HHHSSCSSSC-CCEEEEEECHHHH
T ss_pred EEEechHHHhhcCCCCcchHHHH-HHHHHHHhCC-CeEEEEEeCchHH
Confidence 999997531 1111122222 2343444443 5677888876654
No 314
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.35 E-value=0.068 Score=51.40 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=19.9
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
..+++|+|+.||||||+.+.++-
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999997753
No 315
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.31 E-value=0.03 Score=55.14 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+++|.||.||||||+++.++-
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999998764
No 316
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=92.30 E-value=0.054 Score=56.84 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+.+++|+|++|+|||||++.+..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 45899999999999999998764
No 317
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.30 E-value=0.065 Score=52.22 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+.+++|+||-||||||+.+.++-
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999997753
No 318
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.29 E-value=0.061 Score=52.01 Aligned_cols=21 Identities=33% Similarity=0.305 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+++|+||.||||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998764
No 319
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.29 E-value=0.09 Score=54.81 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCchhHHHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
..++|+||.|+|||++.|.++-.
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999988754
No 320
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.26 E-value=0.062 Score=52.49 Aligned_cols=21 Identities=48% Similarity=0.594 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+++|+|+.||||||+.+.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998764
No 321
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.23 E-value=0.068 Score=51.23 Aligned_cols=23 Identities=22% Similarity=-0.008 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
...++|+||.||||||+.+.++-
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998763
No 322
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.22 E-value=0.067 Score=50.89 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCCchhHHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
.+++|+|+.||||||++..++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999987654
No 323
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.18 E-value=0.17 Score=54.53 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
.+.++|+||.|+||||+++.++--.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999887543
No 324
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=92.16 E-value=0.48 Score=49.81 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
+..+.|+||.|.|||++.|.++--.
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3477899999999999999887433
No 325
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.07 E-value=0.066 Score=51.48 Aligned_cols=21 Identities=38% Similarity=0.422 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+++|+||.||||||+.+.++-
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998764
No 326
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.06 E-value=0.069 Score=52.38 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+.+++|+|+-||||||+.+.++-
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 67999999999999999998764
No 327
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=92.03 E-value=0.21 Score=56.57 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCchhHHHHHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVALIVF 577 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~~~~ 577 (792)
.-++|.|..|||||++|+++..-..
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl 239 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSIL 239 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999998765444
No 328
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=92.02 E-value=0.51 Score=50.57 Aligned_cols=29 Identities=17% Similarity=0.071 Sum_probs=21.6
Q ss_pred cceeecCCCcEEEEEcCCCCCchhHHHHHHH
Q 043119 544 NDTRIDNDGRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 544 n~~~~~~~~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
.+++++.+ .++|+|++|+||||+|+.+.+
T Consensus 28 ~~i~~~lp--~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 28 PTLWDSLP--AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp ----CCCC--EEEEECBTTSSHHHHHHHHHT
T ss_pred ccccccCC--EEEEECCCCCcHHHHHHHHhC
Confidence 34555554 889999999999999998865
No 329
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.88 E-value=0.087 Score=52.53 Aligned_cols=102 Identities=16% Similarity=0.134 Sum_probs=57.0
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCcc--ccCCceeeeccc--ccc-h---hhccchhHHHHHHHHHHHHhCCC
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSF--VPADAATVGLTD--SKH-M---TAEQSSFMIDLHQVGMMLRQATS 623 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~--vpa~~~~~~~~~--~~~-~---~~~~s~f~~e~~~~~~~l~~~~~ 623 (792)
|.+.+++||=||||||.|-..+.....+..-.. -|+...+.+ .. ++. . ....+.. .+ ++..+.+
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg-~~i~sr~G~~~~a~~i~~~-~d------i~~~~~~ 90 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNTMEALPACLL-RD------VAQEALG 90 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSG-GG------GHHHHTT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch-HHHHhhcCCeeEEEecCCH-HH------HHHHhcc
Confidence 789999999999999988766655544432221 233332222 11 111 0 0001111 11 2222366
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhh
Q 043119 624 QSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTEL 670 (792)
Q Consensus 624 ~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l 670 (792)
-++|++||.-=-++ + ..+++.+.+. +..+|++-++.+.
T Consensus 91 ~dvViIDEaQF~~~------v-~el~~~l~~~--gi~VI~~GL~~DF 128 (234)
T 2orv_A 91 VAVIGIDEGQFFPD------I-VEFCEAMANA--GKTVIVAALDGTF 128 (234)
T ss_dssp CSEEEESSGGGCTT------H-HHHHHHHHHT--TCEEEEECCSBCT
T ss_pred CCEEEEEchhhhhh------H-HHHHHHHHhC--CCEEEEEeccccc
Confidence 79999999654432 2 4566666664 5689999998544
No 330
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=91.84 E-value=0.21 Score=53.98 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
...++|+||.|+||||+.|.++-.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999988753
No 331
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.81 E-value=0.078 Score=50.27 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=19.8
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+.-++|+|++|+|||||++.+..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45689999999999999998753
No 332
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.72 E-value=0.08 Score=51.97 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+.+++|+|+-||||||+.+.++-
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999998764
No 333
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.66 E-value=0.063 Score=51.40 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|++|+|||||++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 368999999999999998764
No 334
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.61 E-value=0.083 Score=51.15 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+.+++|+||.||||||+.+.++-
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999997764
No 335
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.60 E-value=0.45 Score=61.54 Aligned_cols=84 Identities=21% Similarity=0.217 Sum_probs=49.9
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHH-hhcCccccCCceeeecc------cccchhhccchhHHHHHHHHHHHHhCCCC
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFL-SHIGSFVPADAATVGLT------DSKHMTAEQSSFMIDLHQVGMMLRQATSQ 624 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~l-aq~g~~vpa~~~~~~~~------~~~~~~~~~s~f~~e~~~~~~~l~~~~~~ 624 (792)
++.++|+||.|+|||||..+++.-... +..+.|+.++...-.+. |.+.+............++...+.....+
T Consensus 1081 g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~~~~~ 1160 (2050)
T 3cmu_A 1081 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 1160 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHHhCCC
Confidence 889999999999999999998866553 34455666654321111 00000000001112234455555556789
Q ss_pred eEEEEeCCCCC
Q 043119 625 SLCLLDEFGKG 635 (792)
Q Consensus 625 slvllDE~~~g 635 (792)
++|++||++.=
T Consensus 1161 dlvVIDsl~~L 1171 (2050)
T 3cmu_A 1161 DVIVVDSVAAL 1171 (2050)
T ss_dssp SEEEESCGGGC
T ss_pred CEEEECCcccc
Confidence 99999997643
No 336
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.56 E-value=0.53 Score=52.07 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHh
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLS 579 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~la 579 (792)
|.+++|.|+.|+|||||+-+++..+...
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~ 224 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN 224 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc
Confidence 7899999999999999999998776543
No 337
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.55 E-value=0.088 Score=50.83 Aligned_cols=25 Identities=40% Similarity=0.712 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
|.+.+++||.|+||||++-.++.-.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999986555433
No 338
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.51 E-value=0.077 Score=50.15 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCCchhHHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
.+++|+|+.||||||+.+.++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999997763
No 339
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.43 E-value=0.087 Score=53.88 Aligned_cols=23 Identities=35% Similarity=0.323 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
..+++|+|+.||||||+.+.++-
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999998764
No 340
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.32 E-value=0.093 Score=50.50 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+++|+|+-||||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998764
No 341
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.17 E-value=0.097 Score=54.54 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=17.3
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
..+++|+||-||||||+.+.++-
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998764
No 342
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.09 E-value=0.76 Score=59.48 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=61.8
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhh-cCccccCCcee-------eeccc-ccchhhccchhHHHHHHHHHHHHhCC
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSH-IGSFVPADAAT-------VGLTD-SKHMTAEQSSFMIDLHQVGMMLRQAT 622 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq-~g~~vpa~~~~-------~~~~~-~~~~~~~~s~f~~e~~~~~~~l~~~~ 622 (792)
|++++|.||.|+|||||..+++..+.... ...|+..+... +++ | .+..-....+ ..++.+....+....
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~~~a~~lGv-d~~~L~I~~~~~-~e~il~~~~~lv~~~ 460 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGV-DIDNLLCSQPDT-GEQALEICDALARSG 460 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTC-CTTTCEEECCSS-HHHHHHHHHHHHHHT
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHcCC-CHHHeEEeCCCC-HHHHHHHHHHHHHhc
Confidence 88999999999999999999876554321 11233333211 111 1 0000001112 233444333333346
Q ss_pred CCeEEEEeCCCCCCCHH-------------HHHHHHHHHHHHH---HhCCCCcEEEEEccChhh
Q 043119 623 SQSLCLLDEFGKGTLTE-------------DGIGLLGGTINYF---VTCDVPPKVLVCTHLTEL 670 (792)
Q Consensus 623 ~~slvllDE~~~gt~~~-------------~~~~l~~~~~~~l---~~~~~~~~~l~~TH~~~l 670 (792)
.+++|++|.+..=.... ....++ ..+..| ++. .++.+|++.|-..-
T Consensus 461 ~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is-~~Lr~L~~lake-~~i~VIlinQl~~~ 522 (2050)
T 3cmu_A 461 AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMS-QAMRKLAGNLKQ-SNTLLIFINQIRMK 522 (2050)
T ss_dssp CCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHH-HHHHHHHHHHHT-TTCEEEEEECCEEC
T ss_pred CCcEEEECCHHHhhcccccccccccchhhHHHHHHH-HHHHHHHHHHHH-cCCeEEEEeecccc
Confidence 78999999987654211 112232 344444 333 36889999887544
No 343
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.03 E-value=0.1 Score=52.00 Aligned_cols=21 Identities=38% Similarity=0.268 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+++|+||.||||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998763
No 344
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.02 E-value=0.1 Score=51.99 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=19.7
Q ss_pred CcEEEEEcCCCCCchhHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~ 573 (792)
..+++|+||.||||||+.+.++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999876
No 345
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.99 E-value=0.093 Score=50.26 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCCchhHHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
.+++|+|+.||||||+-+.++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998764
No 346
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.97 E-value=0.11 Score=48.88 Aligned_cols=21 Identities=24% Similarity=0.059 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
.++|+|+.||||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999997764
No 347
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.95 E-value=0.1 Score=50.82 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=19.6
Q ss_pred CcEEEEEcCCCCCchhHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~ 573 (792)
..+++|+|+.||||||+.+.++
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999765
No 348
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.94 E-value=0.1 Score=51.39 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCchhHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~ 573 (792)
.++|+||.||||||+.+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999775
No 349
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=90.89 E-value=0.18 Score=56.14 Aligned_cols=67 Identities=22% Similarity=0.196 Sum_probs=39.2
Q ss_pred cEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhccchhHHHHHHHHHHHHhC-----CCCeEE
Q 043119 553 RINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQA-----TSQSLC 627 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~-----~~~slv 627 (792)
+-+++.||.|+|||++.+.++... |..+|- ..+.. +.. .+.+..+...+..++..+ ..+++|
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l-----~~~~~~--~~~~~--~~~----~~~~~~~~~~~~~~f~~a~~~~~~~~~il 130 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQEL-----GSKVPF--CPMVG--SEV----YSTEIKKTEVLMENFRRAIGLRIKETKEV 130 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH-----CTTSCE--EEEEG--GGG----CCSSSCHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CeEEEECCCcCCHHHHHHHHHHHh-----CCCceE--EEEeH--HHH----HHHhhhhhHHHHHHHHHHHhhhhcCCcEE
Confidence 467899999999999999887542 211110 11111 111 122222333355556555 578999
Q ss_pred EEeCC
Q 043119 628 LLDEF 632 (792)
Q Consensus 628 llDE~ 632 (792)
++||+
T Consensus 131 ~iDEi 135 (456)
T 2c9o_A 131 YEGEV 135 (456)
T ss_dssp EEEEE
T ss_pred EEech
Confidence 99998
No 350
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.85 E-value=0.11 Score=51.38 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+.+++|+||.||||||+.+.++-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999998764
No 351
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=90.83 E-value=0.13 Score=55.44 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCchhHHHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
..++|+||.|+|||++.|.++-.
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999998754
No 352
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.78 E-value=0.12 Score=50.41 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+.+++|+||.||||||+.+.++-
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999997763
No 353
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.70 E-value=0.097 Score=60.57 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
++.++|+||||+||||++|.++...
T Consensus 60 g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccC
Confidence 5688999999999999999998754
No 354
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.69 E-value=0.11 Score=49.96 Aligned_cols=31 Identities=13% Similarity=0.137 Sum_probs=19.2
Q ss_pred cceeecCCCcEEEEEcCCCCCchhHHHHHHH
Q 043119 544 NDTRIDNDGRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 544 n~~~~~~~~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+++++....--++++|++|+||||+++.+..
T Consensus 15 ~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 15 ASLGLWNKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ---------CEEEEEESTTSSHHHHHHHHHH
T ss_pred HHhhccCCccEEEEECCCCCCHHHHHHHHhc
Confidence 4566655544678999999999999998763
No 355
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.60 E-value=0.079 Score=56.48 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCchhHHHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
.++|+||+|+||||+.|.++...
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 38999999999999999887654
No 356
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.59 E-value=0.13 Score=51.03 Aligned_cols=33 Identities=15% Similarity=0.413 Sum_probs=20.2
Q ss_pred eeccceeecCC----CcEEEEEcCCCCCchhHHHHHH
Q 043119 541 FIPNDTRIDND----GRINIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 541 ~v~n~~~~~~~----~~~~~ltGpN~~GKSt~lk~i~ 573 (792)
.+|-...+... .++++|.||.||||||..+.++
T Consensus 14 ~~p~~~~~~~~~~~k~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 14 LVPRGSHMTDQKLAKAKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp ----------CCTTSCEEEEEECCTTCCHHHHHHHHH
T ss_pred cCCCCccccchhccCCcEEEEECCCCCCHHHHHHHHH
Confidence 44444444332 6799999999999999998775
No 357
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.55 E-value=0.12 Score=51.00 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCchhHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~ 573 (792)
.++|+||.||||||+.+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999999999765
No 358
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.39 E-value=0.11 Score=51.53 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=19.9
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
..+++|+||.||||||+.+.++-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998763
No 359
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.32 E-value=0.13 Score=55.89 Aligned_cols=26 Identities=23% Similarity=0.129 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVF 577 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~ 577 (792)
+..++|+||+||||||+++.++....
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~ 60 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREY 60 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999998876543
No 360
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.27 E-value=0.12 Score=56.78 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=23.7
Q ss_pred ccceeecCC-CcEEEEEcCCCCCchhHHHHHH
Q 043119 543 PNDTRIDND-GRINIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 543 ~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~ 573 (792)
|....+... ..+++|+||.||||||+.+.++
T Consensus 248 p~~~~~~~~~~~lIil~G~pGSGKSTla~~L~ 279 (416)
T 3zvl_A 248 PESSSLLSPNPEVVVAVGFPGAGKSTFIQEHL 279 (416)
T ss_dssp STTSCSCCSSCCEEEEESCTTSSHHHHHHHHT
T ss_pred CCccccCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 334344444 7899999999999999999764
No 361
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.14 E-value=0.14 Score=49.86 Aligned_cols=23 Identities=22% Similarity=0.088 Sum_probs=19.9
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
..+++|||+-||||||+.+.++-
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35889999999999999997764
No 362
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=90.11 E-value=0.14 Score=48.15 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCCchhHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~ 573 (792)
++++|+|+-||||||.-|.++
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 588999999999999999765
No 363
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.05 E-value=0.46 Score=53.53 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFL 578 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~l 578 (792)
|.+++|.|+.|+|||||+-+++..+..
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~ 268 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGT 268 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTT
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHH
Confidence 789999999999999999998876554
No 364
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=89.89 E-value=0.17 Score=54.41 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=28.0
Q ss_pred ceeecCC-CcEEEEEcCCCCCchhHHHHHHHHHHH
Q 043119 545 DTRIDND-GRINIITGPNYSGKSIYIKQVALIVFL 578 (792)
Q Consensus 545 ~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~~~~l 578 (792)
|+.+... |+-++|+||.|+||||++++|+..+--
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 5666666 899999999999999999998765543
No 365
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.84 E-value=0.14 Score=53.40 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCchhHHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
.+++|+||.||||||+.+.++-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998764
No 366
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=89.74 E-value=0.31 Score=53.85 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFL 578 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~l 578 (792)
|+..+|.||+|.||||+++.++.....
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 678999999999999999988766554
No 367
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=89.58 E-value=1.1 Score=43.28 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=27.9
Q ss_pred CCCeEEEEeCCCC----CCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccCh
Q 043119 622 TSQSLCLLDEFGK----GTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLT 668 (792)
Q Consensus 622 ~~~slvllDE~~~----gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~ 668 (792)
..-+||||||++- |.-+.+ .+++.+.++.....+|+++.+.
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~------ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLE------EVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHH------HHHHHHHTSCTTCEEEEECSSC
T ss_pred CCCCEEEEeCCCccccCCCCCHH------HHHHHHHhCcCCCEEEEECCCC
Confidence 5689999999865 333222 3566666655466889998884
No 368
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.39 E-value=0.16 Score=52.63 Aligned_cols=22 Identities=27% Similarity=0.161 Sum_probs=19.9
Q ss_pred CcEEEEEcCCCCCchhHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~ 573 (792)
..+++|+|+-||||||+.+.++
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999887
No 369
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=89.22 E-value=0.18 Score=51.22 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=19.6
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
..+++|+||-||||||+.+.++-
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999996653
No 370
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.06 E-value=0.18 Score=49.73 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
.++|+||.||||||+.+.++-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999998764
No 371
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=89.02 E-value=0.17 Score=54.51 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCchhHHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
.++|+|++|+|||||++.+...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6889999999999999987643
No 372
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=88.99 E-value=0.66 Score=55.08 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCchhHHHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
.++++||.|+|||++.|.++-..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999988665
No 373
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.96 E-value=0.19 Score=49.64 Aligned_cols=30 Identities=30% Similarity=0.320 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCc
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGS 583 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~ 583 (792)
|.+++|.||.||||||.++.++- .+...|.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~--~l~~~~~ 35 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE--RLRERGI 35 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH--HHHTTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH--HHHHcCC
Confidence 67999999999999999998753 3444454
No 374
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=88.91 E-value=0.12 Score=50.24 Aligned_cols=31 Identities=10% Similarity=0.083 Sum_probs=22.9
Q ss_pred cceeecCCCcEEEEEcCCCCCchhHHHHHHH
Q 043119 544 NDTRIDNDGRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 544 n~~~~~~~~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
.++++.....-++|+|++|+||||+++.+..
T Consensus 17 ~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 17 QFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3444544434578999999999999998753
No 375
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.91 E-value=0.27 Score=47.78 Aligned_cols=28 Identities=29% Similarity=0.203 Sum_probs=22.0
Q ss_pred ceeecCCCcEEEEEcCCCCCchhHHHHH
Q 043119 545 DTRIDNDGRINIITGPNYSGKSIYIKQV 572 (792)
Q Consensus 545 ~~~~~~~~~~~~ltGpN~~GKSt~lk~i 572 (792)
...+...++.++|+||.|+||||+...+
T Consensus 27 a~~v~~~g~~ilI~GpsGsGKStLA~~L 54 (205)
T 2qmh_A 27 GVLVDIYGLGVLITGDSGVGKSETALEL 54 (205)
T ss_dssp SEEEEETTEEEEEECCCTTTTHHHHHHH
T ss_pred EEEEEECCEEEEEECCCCCCHHHHHHHH
Confidence 3344455789999999999999988754
No 376
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=88.81 E-value=0.76 Score=54.58 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCchhHHHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
.++|+||.|+|||++.|.++-..
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 68999999999999999887654
No 377
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=88.78 E-value=0.2 Score=50.62 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=19.5
Q ss_pred CcEEEEEcCCCCCchhHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~ 573 (792)
+..++|+||-||||||+.+.++
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999876
No 378
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=88.76 E-value=0.21 Score=49.96 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=17.9
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
|.+++|.||.||||||..+.++-
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999998764
No 379
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=88.71 E-value=0.46 Score=51.55 Aligned_cols=24 Identities=21% Similarity=-0.003 Sum_probs=20.5
Q ss_pred CcEEEE--EcCCCCCchhHHHHHHHH
Q 043119 552 GRINII--TGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 552 ~~~~~l--tGpN~~GKSt~lk~i~~~ 575 (792)
+..++| +||.|.||||+++.++--
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHH
Confidence 457788 999999999999988754
No 380
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=88.67 E-value=0.11 Score=51.14 Aligned_cols=104 Identities=17% Similarity=0.176 Sum_probs=55.0
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccc--cCCceeeeccc--ccc----hhhccchhHHHHHHHHHHHHhCC-
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFV--PADAATVGLTD--SKH----MTAEQSSFMIDLHQVGMMLRQAT- 622 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~v--pa~~~~~~~~~--~~~----~~~~~s~f~~e~~~~~~~l~~~~- 622 (792)
|.+.++|||=|+||||.+-..+....-+..-..+ |+...+.+-.. ++. .....+.. ..++..+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~-------~~~~~~~~~ 100 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSAS-------KDIFKHITE 100 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSG-------GGGGGGCCS
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCH-------HHHHHHHhc
Confidence 8899999999999999988877665544332222 33222211000 110 00001111 13333333
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhh
Q 043119 623 SQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTEL 670 (792)
Q Consensus 623 ~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l 670 (792)
+.++|++||.-- .++.. . ..++.+... +..+|++-++.+.
T Consensus 101 ~~dvViIDEaQF-~~~~~----V-~~l~~l~~~--~~~Vi~~Gl~~DF 140 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGDI----V-EVVQVLANR--GYRVIVAGLDQDF 140 (214)
T ss_dssp SCCEEEECCGGG-SCTTH----H-HHHHHHHHT--TCEEEEEECSBCT
T ss_pred CCCEEEEECccc-CCHHH----H-HHHHHHhhC--CCEEEEEeccccc
Confidence 478999999643 33322 1 345565554 5688999886554
No 381
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.48 E-value=0.22 Score=50.07 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
|.+++|.||.||||||.++.++-
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999998764
No 382
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.21 E-value=0.22 Score=47.68 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|+.|+||||+++.+..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 678999999999999998764
No 383
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=88.17 E-value=0.18 Score=51.69 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCchhHHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
-++|+|++|+||||+++.+...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999987543
No 384
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=88.07 E-value=0.36 Score=57.44 Aligned_cols=101 Identities=17% Similarity=0.108 Sum_probs=48.1
Q ss_pred cEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeecccccchhhccchhHHHHHHHHHHHHhCCCCeEEEEeCC
Q 043119 553 RINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEF 632 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~~~~~~~~~s~f~~e~~~~~~~l~~~~~~slvllDE~ 632 (792)
.-++|+||.|+||||+.+.++....-+ .+|..-....++..+....-...|...+..+-..+.. ..+.++++|
T Consensus 202 ~~vLL~G~pGtGKT~la~~la~~l~~~----~~p~~l~~~~~~~~~~g~~~~G~~e~~l~~~~~~~~~-~~~~iLfiD-- 274 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIAEGLAQQIINN----EVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIRQ-AGNIILFID-- 274 (758)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHHSS----CSCTTTSSCCEECC----------CTTHHHHHHHHHT-CCCCEEEEC--
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHhcC----CCChhhcCCeEEEecccccccchHHHHHHHHHHHHHh-cCCEEEEEc--
Confidence 357899999999999999887664321 2343222111111011000111222233333333322 567899999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChh
Q 043119 633 GKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTE 669 (792)
Q Consensus 633 ~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~ 669 (792)
|. .+.. ..+... .+.+ ...+|.+|...+
T Consensus 275 --~~--~~~~---~~L~~~-l~~~-~v~~I~at~~~~ 302 (758)
T 3pxi_A 275 --AA--IDAS---NILKPS-LARG-ELQCIGATTLDE 302 (758)
T ss_dssp --C-------------CCC-TTSS-SCEEEEECCTTT
T ss_pred --Cc--hhHH---HHHHHH-HhcC-CEEEEeCCChHH
Confidence 22 1211 112222 3333 567888887766
No 385
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=87.96 E-value=0.25 Score=48.84 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCc
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGS 583 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~ 583 (792)
|.++++.|+.||||||.++.++- .+...|.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~--~l~~~~~ 32 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVE--TLEQLGI 32 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHH--HHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHcCC
Confidence 57999999999999999997753 3444453
No 386
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=87.92 E-value=0.25 Score=48.83 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+..++|+|+.||||||+.+.++-
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998764
No 387
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=87.87 E-value=0.2 Score=55.47 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCchhHHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
-++|+|+||+|||||++.+...
T Consensus 182 kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999987643
No 388
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=87.87 E-value=0.23 Score=52.62 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCchhHHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
.+++|+||.||||||+.+.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4889999999999999998764
No 389
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=87.81 E-value=0.25 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=19.8
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+.+++|+||.||||||+.+.++-
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 35889999999999999987763
No 390
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=87.69 E-value=0.25 Score=51.96 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCchhHHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
.+++|+||.||||||+-+.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999997764
No 391
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=87.51 E-value=0.23 Score=47.29 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=18.4
Q ss_pred cEEEEEcCCCCCchhHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~ 573 (792)
--++|+|++|+||||+++.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~ 37 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLA 37 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 357899999999999999764
No 392
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.33 E-value=0.28 Score=45.16 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++++|+.|+||||+++.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 368999999999999998763
No 393
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.22 E-value=0.29 Score=51.12 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
..+++|+||.||||||+.+.++-
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 46889999999999999998764
No 394
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.17 E-value=0.19 Score=47.58 Aligned_cols=22 Identities=18% Similarity=0.224 Sum_probs=18.5
Q ss_pred CcEEEEEcCCCCCchhHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~ 573 (792)
.--++|+|++|+|||||++.+.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 3467899999999999998764
No 395
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=87.12 E-value=0.21 Score=53.70 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=22.3
Q ss_pred ceeccceeecCCCcEEEEEcCCCCCchhHHHHHH
Q 043119 540 TFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 540 ~~v~n~~~~~~~~~~~~ltGpN~~GKSt~lk~i~ 573 (792)
..+..++.+. ++|+|++|+|||||++++.
T Consensus 30 k~~~~~~~~~-----I~vvG~~g~GKSTLln~L~ 58 (361)
T 2qag_A 30 KSVKKGFEFT-----LMVVGESGLGKSTLINSLF 58 (361)
T ss_dssp HHHHHCCEEC-----EEECCCTTSCHHHHHHHHT
T ss_pred eeecCCCCEE-----EEEEcCCCCCHHHHHHHHh
Confidence 3455566553 4899999999999999864
No 396
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=87.01 E-value=0.29 Score=48.05 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+++|.||.||||+|.-+.++-
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999997763
No 397
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=86.99 E-value=0.28 Score=45.41 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|+.|+|||||++.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 368999999999999998753
No 398
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=86.84 E-value=0.3 Score=44.94 Aligned_cols=20 Identities=25% Similarity=0.270 Sum_probs=17.8
Q ss_pred EEEEcCCCCCchhHHHHHHH
Q 043119 555 NIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 555 ~~ltGpN~~GKSt~lk~i~~ 574 (792)
++++|+.|+||||+++.+..
T Consensus 6 i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999998753
No 399
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=86.80 E-value=0.26 Score=47.74 Aligned_cols=110 Identities=15% Similarity=0.172 Sum_probs=53.2
Q ss_pred ceeccceeecCCCcEEEEEcCCCCCchhHHHHHHHHHHHhhcC-ccc-cCCceeee--cccccc-------hhhccchhH
Q 043119 540 TFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIG-SFV-PADAATVG--LTDSKH-------MTAEQSSFM 608 (792)
Q Consensus 540 ~~v~n~~~~~~~~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g-~~v-pa~~~~~~--~~~~~~-------~~~~~s~f~ 608 (792)
..||..... .+++..|+||=||||||.|-+.......+..- .++ |+-..+.+ ++. +. .......|.
T Consensus 10 ~~~~~~~~~--~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S-~~g~~~~A~~~~~~~d~~ 86 (195)
T 1w4r_A 10 HLVPRGSKT--RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCT-HDRNTMEALPACLLRDVA 86 (195)
T ss_dssp -----------CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCH-HHHHHSEEEEESSGGGGH
T ss_pred cccccCCCC--ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhh-ccCCcccceecCCHHHHH
Confidence 345544432 37899999999999996555444444444322 222 33111111 111 10 001112222
Q ss_pred HHHHHHHHHHHhCCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEccChhhh
Q 043119 609 IDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELL 671 (792)
Q Consensus 609 ~e~~~~~~~l~~~~~~slvllDE~~~gt~~~~~~~l~~~~~~~l~~~~~~~~~l~~TH~~~l~ 671 (792)
. ...+-++|++||.== . .+ + ...++.+.+. +..||++.++.+.-
T Consensus 87 ~----------~~~~~DvIlIDEaQF-f--k~---~-ve~~~~L~~~--gk~VI~~GL~~DF~ 130 (195)
T 1w4r_A 87 Q----------EALGVAVIGIDEGQF-F--PD---I-VEFCEAMANA--GKTVIVAALDGTFQ 130 (195)
T ss_dssp H----------HHHTCSEEEESSGGG-C--TT---H-HHHHHHHHHT--TCEEEEEEESBCTT
T ss_pred H----------hccCCCEEEEEchhh-h--HH---H-HHHHHHHHHC--CCeEEEEecccccc
Confidence 1 123468999999311 1 12 2 2345677765 56899998887764
No 400
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=86.78 E-value=0.32 Score=48.59 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+..++|+|+-||||||+.+.++-
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998764
No 401
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=86.48 E-value=0.3 Score=48.08 Aligned_cols=21 Identities=38% Similarity=0.433 Sum_probs=18.6
Q ss_pred cEEEEEcCCCCCchhHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~ 573 (792)
.+++|+|+.||||||+.+.++
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~ 24 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVA 24 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999765
No 402
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=86.45 E-value=0.32 Score=48.83 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+.+++|.|+-||||||+.+.++-
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45889999999999999998763
No 403
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=86.35 E-value=0.33 Score=44.99 Aligned_cols=20 Identities=20% Similarity=0.131 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCchhHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~ 573 (792)
-++++|+.|+|||||++.+.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~ 27 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFV 27 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 36899999999999999875
No 404
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.28 E-value=0.34 Score=44.87 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=17.7
Q ss_pred EEEEcCCCCCchhHHHHHHH
Q 043119 555 NIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 555 ~~ltGpN~~GKSt~lk~i~~ 574 (792)
++++|+.|+|||||++.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999998753
No 405
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=86.10 E-value=0.34 Score=45.02 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCchhHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~ 573 (792)
-++++|+.|+|||||++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 46899999999999999865
No 406
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=86.09 E-value=2.3 Score=47.02 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=19.5
Q ss_pred ceeccceeecCCCcEEEEEcCCCCCchhHHHHHH
Q 043119 540 TFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 540 ~~v~n~~~~~~~~~~~~ltGpN~~GKSt~lk~i~ 573 (792)
..+|..-.+.. ..++|+|+.|+|||||++.+.
T Consensus 13 ~~~~~~~~m~~--~~V~lvG~~nvGKSTL~n~l~ 44 (456)
T 4dcu_A 13 GLVPRGSHMGK--PVVAIVGRPNVGKSTIFNRIA 44 (456)
T ss_dssp ----------C--CEEEEECSSSSSHHHHHHHHE
T ss_pred CCCCChhhcCC--CEEEEECCCCCcHHHHHHHHh
Confidence 35555555543 489999999999999999874
No 407
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=86.07 E-value=0.34 Score=44.72 Aligned_cols=21 Identities=29% Similarity=0.243 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++++|+.|+|||||++.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 368999999999999998763
No 408
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=86.06 E-value=0.35 Score=47.64 Aligned_cols=21 Identities=48% Similarity=0.741 Sum_probs=18.9
Q ss_pred CcEEEEEcCCCCCchh-HHHHH
Q 043119 552 GRINIITGPNYSGKSI-YIKQV 572 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt-~lk~i 572 (792)
|.+.+||||-+||||| +|+.+
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~ 49 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRL 49 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 8999999999999999 66764
No 409
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=86.02 E-value=0.37 Score=47.96 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
|.++++.|+.||||||..+.++-
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999998764
No 410
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=86.00 E-value=0.34 Score=44.65 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|+.|+|||||++.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 368999999999999997653
No 411
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=85.98 E-value=0.34 Score=45.55 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|+.|+|||||++.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 468999999999999997753
No 412
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=85.95 E-value=0.34 Score=44.96 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=17.3
Q ss_pred EEEEcCCCCCchhHHHHHH
Q 043119 555 NIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 555 ~~ltGpN~~GKSt~lk~i~ 573 (792)
++++|+.|+|||||++.+.
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999875
No 413
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=85.93 E-value=0.35 Score=44.82 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=17.7
Q ss_pred EEEEcCCCCCchhHHHHHHH
Q 043119 555 NIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 555 ~~ltGpN~~GKSt~lk~i~~ 574 (792)
++|+|+.|+|||||++.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 68999999999999998753
No 414
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=85.65 E-value=0.34 Score=46.36 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCCchhHHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
.-++|+|+.|+|||||++.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999998764
No 415
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=85.64 E-value=0.36 Score=45.23 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCchhHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~ 573 (792)
-++|+|+.|+|||||++.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999875
No 416
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=85.48 E-value=0.37 Score=45.14 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=19.7
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
..-++|+|+.|+|||||++.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45688999999999999998753
No 417
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=85.45 E-value=0.38 Score=44.69 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=17.2
Q ss_pred EEEEcCCCCCchhHHHHHH
Q 043119 555 NIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 555 ~~ltGpN~~GKSt~lk~i~ 573 (792)
++|+|+.|+|||||++.+.
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999874
No 418
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=85.28 E-value=0.39 Score=44.37 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=17.7
Q ss_pred EEEEcCCCCCchhHHHHHHH
Q 043119 555 NIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 555 ~~ltGpN~~GKSt~lk~i~~ 574 (792)
++++|+.|+|||||++.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999998753
No 419
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=85.25 E-value=0.41 Score=47.35 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
|.++++.||.||||||..+.++-
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~ 27 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYK 27 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999997754
No 420
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=85.18 E-value=0.36 Score=44.65 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=17.0
Q ss_pred EEEEcCCCCCchhHHHHHH
Q 043119 555 NIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 555 ~~ltGpN~~GKSt~lk~i~ 573 (792)
++|+|+.|+|||||++.+.
T Consensus 5 i~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEESTTSSHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 6899999999999999763
No 421
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=85.15 E-value=0.39 Score=44.81 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCchhHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~ 573 (792)
-++|+|+.|+|||||++.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHh
Confidence 36899999999999999875
No 422
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=85.13 E-value=0.37 Score=45.73 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=17.2
Q ss_pred EEEEcCCCCCchhHHHHHH
Q 043119 555 NIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 555 ~~ltGpN~~GKSt~lk~i~ 573 (792)
++|+|+.|+|||||++.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~ 22 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6899999999999999765
No 423
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=85.13 E-value=0.42 Score=44.41 Aligned_cols=20 Identities=20% Similarity=0.296 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCchhHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~ 573 (792)
-++++|+.|+|||||++.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~ 28 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQ 28 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999874
No 424
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=85.12 E-value=0.44 Score=46.51 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=16.9
Q ss_pred cEEEEEcCCCCCchhHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQV 572 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i 572 (792)
-++++||+.|||||++....
T Consensus 6 mi~l~tG~pGsGKT~~a~~~ 25 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSM 25 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHH
Confidence 37899999999999997543
No 425
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=85.11 E-value=0.38 Score=45.14 Aligned_cols=20 Identities=30% Similarity=0.298 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCchhHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~ 573 (792)
-++|+|+.|+|||||++.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36899999999999999764
No 426
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=85.03 E-value=0.86 Score=53.97 Aligned_cols=105 Identities=13% Similarity=0.207 Sum_probs=53.8
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHhhcCccccCCceeeeccc-ccchh--hccchhHHHHHHHHHHHHh--CCCCeE
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTD-SKHMT--AEQSSFMIDLHQVGMMLRQ--ATSQSL 626 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~~laq~g~~vpa~~~~~~~~~-~~~~~--~~~s~f~~e~~~~~~~l~~--~~~~sl 626 (792)
.+-+++.||.|+|||.+.|.+|. ..|.+. + .++ ++.+. .+.| | +.+..+... ...|++
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~-----e~~~~f------~-~v~~~~l~s~~vGes----e-~~vr~lF~~Ar~~~P~I 573 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIAN-----ECQANF------I-SIKGPELLTMWFGES----E-ANVREIFDKARQAAPCV 573 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHH-----TTTCEE------E-ECCHHHHHTTTCSSC----H-HHHHHHHHHHHTTCSEE
T ss_pred CceEEEecCCCCCchHHHHHHHH-----HhCCce------E-EeccchhhccccchH----H-HHHHHHHHHHHHcCCce
Confidence 45678999999999999998763 233211 1 111 11111 1222 1 223444443 357899
Q ss_pred EEEeCCCC-----CCCHHH----HHHHHHHHHHHHHh--CCCCcEEEEEccChhhhhc
Q 043119 627 CLLDEFGK-----GTLTED----GIGLLGGTINYFVT--CDVPPKVLVCTHLTELLNE 673 (792)
Q Consensus 627 vllDE~~~-----gt~~~~----~~~l~~~~~~~l~~--~~~~~~~l~~TH~~~l~~~ 673 (792)
+++||+-+ |.+..+ ...+...++..+-. ...+..+|.+|..++.++.
T Consensus 574 ifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~ 631 (806)
T 3cf2_A 574 LFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDP 631 (806)
T ss_dssp EECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCH
T ss_pred eechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCH
Confidence 99999864 222111 11233344444432 1124466778988887664
No 427
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=84.70 E-value=0.4 Score=45.68 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=18.3
Q ss_pred cEEEEEcCCCCCchhHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~ 573 (792)
.-++|+|+.|+|||||++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALF 44 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999764
No 428
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=84.69 E-value=0.43 Score=45.56 Aligned_cols=20 Identities=30% Similarity=0.207 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCchhHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~ 573 (792)
-++|+|+.|+|||||++.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~ 41 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYL 41 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 46899999999999998764
No 429
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=84.63 E-value=0.44 Score=51.19 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCchhHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~ 573 (792)
=++|+|+.||||||++|++-
T Consensus 35 killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 35 KILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 46899999999999999984
No 430
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=84.57 E-value=0.44 Score=44.68 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|+.|+|||||++.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~ 31 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQ 31 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998754
No 431
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=84.53 E-value=0.39 Score=52.01 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
+.-++|+|+|++|||||++.+...
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 456899999999999999988754
No 432
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=84.52 E-value=0.22 Score=50.77 Aligned_cols=22 Identities=32% Similarity=0.375 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCchhHHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
-++|+||.|+||||+.+.++.-
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3679999999999999988754
No 433
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=84.47 E-value=0.43 Score=44.67 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCchhHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~ 573 (792)
-++|+|+.|+|||||++.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFM 35 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46889999999999999775
No 434
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=84.43 E-value=0.39 Score=46.97 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
.+.+++.||.|+||||+..+++-.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999877654
No 435
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.37 E-value=0.46 Score=46.50 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.0
Q ss_pred cEEEEEcCCCCCchhHHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
.-++|+|+.|+||||+++.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3678999999999999998753
No 436
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=84.34 E-value=0.48 Score=43.82 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|+.|+|||||++.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 368999999999999998753
No 437
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=84.31 E-value=0.47 Score=44.34 Aligned_cols=21 Identities=33% Similarity=0.279 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|+.|+|||||++.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998753
No 438
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=84.25 E-value=0.45 Score=45.03 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=17.4
Q ss_pred EEEEcCCCCCchhHHHHHH
Q 043119 555 NIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 555 ~~ltGpN~~GKSt~lk~i~ 573 (792)
++|+|+.|+|||||++.+.
T Consensus 7 i~v~G~~~~GKSsli~~l~ 25 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLI 25 (189)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999875
No 439
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=84.25 E-value=0.47 Score=45.32 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|+.|+|||||++.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 468999999999999997754
No 440
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=84.22 E-value=0.46 Score=44.83 Aligned_cols=21 Identities=29% Similarity=0.243 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|+.|+|||||++.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 478999999999999998763
No 441
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=84.21 E-value=0.46 Score=50.81 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
++.++|+||.|+||||+.+.++...
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999887543
No 442
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=84.12 E-value=0.26 Score=56.75 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCchhHHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~~ 575 (792)
-++|+||.|.|||+++|.++..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTT
T ss_pred ceEEECCCchHHHHHHHHHHHh
Confidence 4789999999999999977643
No 443
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=84.10 E-value=0.49 Score=45.05 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++++|+.|+|||||++.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 568999999999999998763
No 444
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=83.99 E-value=0.46 Score=45.12 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|+.|+|||||++.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 368999999999999998753
No 445
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=83.90 E-value=0.49 Score=46.44 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCCchhHHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
..++|+|+.|+||||++..++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4789999999999999997764
No 446
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=83.88 E-value=0.49 Score=50.59 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=18.6
Q ss_pred EEEEcCCCCCchhHHHHHHHH
Q 043119 555 NIITGPNYSGKSIYIKQVALI 575 (792)
Q Consensus 555 ~~ltGpN~~GKSt~lk~i~~~ 575 (792)
++|.|+.+|||||++|++.++
T Consensus 12 ~lllG~~~sGKsT~~kq~~~~ 32 (354)
T 2xtz_A 12 LLLLGAGESGKSTIFKQIKLL 32 (354)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 689999999999999998743
No 447
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=83.83 E-value=0.47 Score=44.87 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCchhHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~ 573 (792)
-++|+|+.|+|||||++.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~ 31 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFI 31 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999875
No 448
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=83.81 E-value=0.48 Score=44.94 Aligned_cols=21 Identities=19% Similarity=0.075 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|+.|+|||||++.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 468999999999999998753
No 449
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=83.79 E-value=2.8 Score=42.47 Aligned_cols=21 Identities=19% Similarity=0.195 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|+-|+|||||++.+..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999997753
No 450
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=83.75 E-value=0.45 Score=45.56 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCchhHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~ 573 (792)
+++|+|+-|||||||-.+++
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la 20 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALI 20 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHH
T ss_pred CEEEECCCCCcHHHHHHHHH
Confidence 36899999999999999876
No 451
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=83.75 E-value=0.52 Score=43.41 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=17.9
Q ss_pred EEEEcCCCCCchhHHHHHHH
Q 043119 555 NIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 555 ~~ltGpN~~GKSt~lk~i~~ 574 (792)
++++|+.|+|||||++.+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 58999999999999998754
No 452
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=83.69 E-value=0.55 Score=46.01 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=19.9
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
|.+++|=|+-||||||.++.++-
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~ 24 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYH 24 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHH
Confidence 46889999999999999997764
No 453
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=83.59 E-value=0.51 Score=44.34 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|+.|+|||||++.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 468999999999999998753
No 454
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=83.48 E-value=0.48 Score=48.66 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
.++|+|++|+||||+++.+..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 578999999999999998764
No 455
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=83.45 E-value=0.51 Score=44.18 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|+.|+|||||++.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 368999999999999998764
No 456
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=83.37 E-value=0.52 Score=44.47 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCchhHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~ 573 (792)
-++|+|+.|+|||||++.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFF 39 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999876
No 457
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=83.19 E-value=0.55 Score=45.34 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|+.|+|||||++.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVN 30 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 468999999999999998753
No 458
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=83.13 E-value=0.75 Score=43.62 Aligned_cols=25 Identities=28% Similarity=0.151 Sum_probs=20.7
Q ss_pred ecCCCcEEEEEcCCCCCchhHHHHH
Q 043119 548 IDNDGRINIITGPNYSGKSIYIKQV 572 (792)
Q Consensus 548 ~~~~~~~~~ltGpN~~GKSt~lk~i 572 (792)
+...|+-++|+|+.|+||||+.-.+
T Consensus 12 v~v~G~gvli~G~SGaGKStlal~L 36 (181)
T 3tqf_A 12 LVIDKMGVLITGEANIGKSELSLAL 36 (181)
T ss_dssp EEETTEEEEEEESSSSSHHHHHHHH
T ss_pred EEECCEEEEEEcCCCCCHHHHHHHH
Confidence 4445889999999999999987754
No 459
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=83.03 E-value=0.54 Score=45.30 Aligned_cols=21 Identities=29% Similarity=0.243 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|+.|+|||||++.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 468999999999999998753
No 460
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=82.97 E-value=0.57 Score=44.78 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|+.|+|||||++.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~ 29 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTK 29 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999998754
No 461
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=82.96 E-value=0.58 Score=49.44 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+.+++|+||-|+||||+-+.++-
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999987763
No 462
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=82.77 E-value=0.6 Score=43.79 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCchhHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~ 573 (792)
-++|+|+.|+|||||++.+.
T Consensus 12 ~i~v~G~~~~GKssli~~l~ 31 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFK 31 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 46899999999999999864
No 463
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=82.67 E-value=0.56 Score=44.16 Aligned_cols=20 Identities=30% Similarity=0.140 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCchhHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~ 573 (792)
-++|+|+.|+|||||++.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 46899999999999999875
No 464
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=82.66 E-value=0.58 Score=53.53 Aligned_cols=23 Identities=39% Similarity=0.401 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+++++|+||+|+||||+++.++.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~ 226 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVAD 226 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 56999999999999999987754
No 465
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=82.56 E-value=0.58 Score=44.65 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCchhHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~ 573 (792)
-++|+|+.|+|||||++.+.
T Consensus 18 ki~v~G~~~~GKSsli~~l~ 37 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFA 37 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 46899999999999999875
No 466
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=82.53 E-value=0.54 Score=45.66 Aligned_cols=35 Identities=9% Similarity=0.125 Sum_probs=22.1
Q ss_pred ceeccceeecCC-CcEEEEEcCCCCCchhHHHHHHH
Q 043119 540 TFIPNDTRIDND-GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 540 ~~v~n~~~~~~~-~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
..+|.+..+... ..-++|+|+.|+|||||++.+..
T Consensus 12 ~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 12 DLGTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp -------CGGGSEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cccccccccccccCcEEEEECcCCCCHHHHHHHHhc
Confidence 345556655544 34578999999999999998754
No 467
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=82.37 E-value=0.6 Score=44.65 Aligned_cols=21 Identities=19% Similarity=0.120 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|+.|+|||||++.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 468999999999999998753
No 468
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=82.36 E-value=0.6 Score=43.99 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++++|+.|+|||||++.+..
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 368999999999999998753
No 469
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=82.35 E-value=0.63 Score=44.31 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=17.2
Q ss_pred EEEEEcCCCCCchhHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~ 573 (792)
=++|+|+.|+|||||++.+.
T Consensus 16 ki~vvG~~~~GKssL~~~l~ 35 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIY 35 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46899999999999998654
No 470
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=82.35 E-value=0.63 Score=44.30 Aligned_cols=21 Identities=19% Similarity=0.263 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|+.|+|||||++.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 468999999999999998753
No 471
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=82.26 E-value=0.48 Score=45.68 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=17.3
Q ss_pred EEEEEcCCCCCchhHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQV 572 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i 572 (792)
-++|+|+.|+|||||++.+
T Consensus 25 ki~vvG~~~vGKSsLi~~l 43 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTF 43 (195)
T ss_dssp EEEEECSTTSSHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999975
No 472
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=82.15 E-value=0.59 Score=45.39 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|+.|+|||||++.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 468999999999999998653
No 473
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=81.99 E-value=0.63 Score=44.49 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|+.|+|||||++.+..
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 478999999999999998754
No 474
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=81.96 E-value=0.6 Score=44.22 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=18.3
Q ss_pred cEEEEEcCCCCCchhHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~ 573 (792)
--++++|+.|+||||+++.+.
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~ 39 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFN 39 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 357899999999999999865
No 475
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=81.95 E-value=0.61 Score=45.05 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|+.|+|||||++.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 468999999999999998753
No 476
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=81.84 E-value=0.65 Score=45.66 Aligned_cols=20 Identities=30% Similarity=0.132 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCchhHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~ 573 (792)
.++|||.-||||||..+.++
T Consensus 11 ~iglTGgigsGKStv~~~l~ 30 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFA 30 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999654
No 477
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=81.65 E-value=0.64 Score=44.39 Aligned_cols=21 Identities=24% Similarity=0.282 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
=++|+|+.|+|||||++.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~ 45 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYAD 45 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 468999999999999998764
No 478
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=81.57 E-value=0.66 Score=44.26 Aligned_cols=21 Identities=33% Similarity=0.260 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|+.|+|||||++.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 468999999999999998753
No 479
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=81.54 E-value=0.39 Score=48.91 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=19.7
Q ss_pred CcEEEEEcCCCCCchhHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~ 573 (792)
+.+++|.|+-||||||+.+.++
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTG
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 6789999999999999999664
No 480
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=81.48 E-value=0.69 Score=50.91 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCCchhHHHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVALIV 576 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~~~ 576 (792)
..+++++||+|+||||+...++...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3588999999999999999887544
No 481
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=81.45 E-value=0.66 Score=44.08 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=18.9
Q ss_pred CcEEEEEcCCCCCchhHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~ 573 (792)
.--++|+|+.|+|||||++.+.
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~ 37 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFS 37 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 3457899999999999999875
No 482
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=81.34 E-value=0.7 Score=45.47 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=18.8
Q ss_pred cEEEEEcCCCCCchhHHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
..++|+|+.|+||||++..++.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 3678889999999999998764
No 483
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=81.08 E-value=0.68 Score=44.64 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|+.|+|||||++.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 468999999999999998763
No 484
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=81.07 E-value=0.67 Score=44.37 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|+.|+|||||++.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 368999999999999998753
No 485
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=81.06 E-value=0.71 Score=43.97 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|+.|+|||||++.+..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 468999999999999998753
No 486
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=81.05 E-value=0.74 Score=43.98 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|+.|+|||||++.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 468999999999999998753
No 487
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=80.99 E-value=0.75 Score=48.40 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCCchhHHHHHHH
Q 043119 552 GRINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 552 ~~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
+++++|+||-|.||||+++.++-
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHH
Confidence 36999999999999999998753
No 488
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=80.98 E-value=0.72 Score=44.56 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|+.|+|||||++.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 468999999999999998753
No 489
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=80.95 E-value=0.71 Score=49.96 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCchhHHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
.+++|+||.|+||||+.+.++-
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 4789999999999999987764
No 490
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=80.92 E-value=0.73 Score=43.27 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCchhHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~ 573 (792)
-++|+|+.|+|||||++.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~ 29 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYT 29 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 46899999999999999775
No 491
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=80.89 E-value=0.64 Score=43.93 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|+.|+|||||++.+..
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999998764
No 492
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=80.87 E-value=0.73 Score=44.84 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|+.|+|||||++.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998764
No 493
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=80.71 E-value=0.77 Score=43.65 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCchhHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~ 573 (792)
-++|+|+.|+|||||++.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~ 41 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFC 41 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999864
No 494
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=80.68 E-value=0.77 Score=44.00 Aligned_cols=21 Identities=24% Similarity=0.129 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+|+.|+|||||++.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998754
No 495
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=80.61 E-value=0.78 Score=44.12 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCCchhHHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~~ 574 (792)
--++|+|+.|+|||||++.+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 3578999999999999998753
No 496
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=80.52 E-value=0.75 Score=44.27 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCchhHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~ 573 (792)
-++|+|+.|+|||||++.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~ 29 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYA 29 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36899999999999999764
No 497
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=80.44 E-value=0.8 Score=43.52 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCchhHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~ 573 (792)
-++|+|+.|+|||||++.+.
T Consensus 17 ~i~v~G~~~~GKssli~~l~ 36 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFT 36 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999875
No 498
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=80.37 E-value=0.77 Score=44.08 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCchhHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~ 573 (792)
-++|+|+.|+||||+++.+.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~ 27 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFA 27 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37899999999999999765
No 499
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=80.21 E-value=0.79 Score=45.70 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCchhHHHHHHH
Q 043119 554 INIITGPNYSGKSIYIKQVAL 574 (792)
Q Consensus 554 ~~~ltGpN~~GKSt~lk~i~~ 574 (792)
-++|+||.||||||..+.++-
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHH
Confidence 468999999999999997753
No 500
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=79.99 E-value=0.74 Score=44.13 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=18.3
Q ss_pred cEEEEEcCCCCCchhHHHHHH
Q 043119 553 RINIITGPNYSGKSIYIKQVA 573 (792)
Q Consensus 553 ~~~~ltGpN~~GKSt~lk~i~ 573 (792)
--++|+|+.|+|||||++.+.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 357999999999999999763
Done!