Citrus Sinensis ID: 043119

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790--
MQVYMACILHGHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSEESFLSALKRSDGTTEAPTVKLVKSSIFSYEQAWHRLIYLRVTGMDDGLSIKERICYLNSMMDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTVDTFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERWSHENISAQDQQYKNAVEKMLAFDVLKGDLRLFFQDLLPSKL
ccEEEEEEEcccEEEEEEEEcccccEEEEEEcccccccHHHHHHHHHccccEEECcccccHHHHHHHHHcccccccccCEEEcccccccHHHHHHHHHHHccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEcccccEEEEHHHHHHcccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHHHccccHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccEEEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEECccccccEEccccccccccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHHHHHHccccccEEEEEccccccccccccccccccEEEEEEEEEccccccccccEEEEEEcccccccccHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccc
MQVYMACILHGHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSEESFLSALKRSDGTTEAPTVKLVKSSIFSYEQAWHRLIYLRVTGMDDGLSIKERICYLNSMMDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTVDTFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERWSHENISAQDQQYKNAVEKMLAFDVLKGDLRLFFQDLLPS**
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MQVYMACILHGHRVGVSYYDSSIRQLHVLEVWEDSNSDFPLIDIVKYQAQPQIIYTSTKSEESFLSALKRSDGTTEAPTVKLVKSSIFSYEQAWHRLIYLRVTGMDDGLSIKERICYLNSMMDMGSEVQVRASGGLLAVLENERIVDTLEQKESGNASITIDSVIEVSLNKFLKLDATAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELMASLHETLKYVKDIPHILKKFNSPSFIYTASDWTAFLKSICSLLHVNKIFEVGISESLREQLRLLNFDIVEKAASCITTELAYVYELVIGIIDVNRSKEKGYGTLVREGFCDELDELRQIYEELPEFLEEVASLELVQLPHLCKEMFVPCIVYIHQIGYLMCIFEEKLDDTTLEQLQGFEFAFSDMDGETKRLFYHTPKTRELDNLLGDIYHKILDMERAITRDLVSHICLFSDHLLKAVNFAAELDCFLSLALVAHQNNYMRPILTLEPLLDIQNGRHVLQEMTVDTFIPNDTRIDNDGRINIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDSKHMTAEQSSFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINYFVTCDVPPKVLVCTHLTELLNEGCLPKSERLKFYTMSVLRPENNSTDVEDIVFLYRLVPGHALLSYGLHCALLAGVPAEVIKRAAYVLEAAQNNKHVERWSHENISAQDQQYKNAVEKMLAFDVLKGDLRLFFQDLLPSKL

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
DNA mismatch repair protein MSH5 Involved in meiotic recombination in association with MSH4. Required for reciprocal recombination and proper segregation of homologous chromosomes at meiosis. Promotes homologous recombination through facilitating chiasma formation during prophase I. Involved in the control of class I crossovers formation.confidentF4JEP5
MutS protein homolog 5 Involved in meiotic recombination. Facilitate crossovers between homologs during meiosis.probableQ6MG62
MutS protein homolog 5 Involved in meiotic recombination. Facilitate crossovers between homologs during meiosis.probableQ9QUM7

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1WB9, chain A
Confidence level:very confident
Coverage over the Query: 2-105,119-146,157-311,324-596,607-744
View the alignment between query and template
View the model in PyMOL
Template: 2O8B, chain B
Confidence level:very confident
Coverage over the Query: 2-690,703-746
View the alignment between query and template
View the model in PyMOL
Template: 3THX, chain A
Confidence level:very confident
Coverage over the Query: 3-146,157-187,204-777
View the alignment between query and template
View the model in PyMOL