BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043121
(169 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A7ZE19|RF2_CAMC1 Peptide chain release factor 2 OS=Campylobacter concisus (strain
13826) GN=prfB PE=3 SV=1
Length = 366
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 26 RECEMDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVN-LDAYSP 84
++ ++DTY+ SG G QH NK ESA+R+ H+PTG++ DRSQHKN A+++ L +
Sbjct: 236 KDLKIDTYRASGAGGQHVNKTESAIRITHIPTGIVVQCQNDRSQHKNRATAMKMLKSRLY 295
Query: 85 PPQLLQILPPKSTITSSEVG 104
+L++ +++ SE+G
Sbjct: 296 ELELMKQQEASNSVEKSEIG 315
>sp|A0RQM7|RF2_CAMFF Peptide chain release factor 2 OS=Campylobacter fetus subsp. fetus
(strain 82-40) GN=prfB PE=3 SV=1
Length = 369
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
Query: 20 TDDELLRECE-----MDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHA 74
DD++ E E +D Y+ SG G QH NK ESAVR+ H+PTG++ DRSQHKN A
Sbjct: 225 VDDDIAIEIEEKDLRLDYYRASGAGGQHVNKTESAVRITHIPTGIVVQCQNDRSQHKNKA 284
Query: 75 SSVN-LDAYSPPPQLLQILPPKSTITSSEVG 104
+++ L + +L++ + I SE+G
Sbjct: 285 TAMKMLKSRLYEFELMKQQEANNAIEKSEIG 315
>sp|Q7MAP4|RF2_WOLSU Peptide chain release factor 2 OS=Wolinella succinogenes (strain
ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC
602W) GN=prfB PE=3 SV=1
Length = 368
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 26 RECEMDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
++ +DTY+ SG G QH NK ESA+R+ H+PTG++ DRSQHKN A++ +
Sbjct: 236 KDLRLDTYRASGAGGQHVNKTESAIRITHIPTGIVVQCQNDRSQHKNKATAFKM 289
>sp|A6SUF6|RF1_JANMA Peptide chain release factor 1 OS=Janthinobacterium sp. (strain
Marseille) GN=prfA PE=3 SV=1
Length = 360
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 39/53 (73%)
Query: 27 ECEMDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
+ +DTY+ SG G QH NK +SAVR+ H+PTG++ +DRSQHKN AS++ +
Sbjct: 221 DLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVECQDDRSQHKNKASALKV 273
>sp|Q30TP0|RF2_SULDN Peptide chain release factor 2 OS=Sulfurimonas denitrificans
(strain ATCC 33889 / DSM 1251) GN=prfB PE=3 SV=1
Length = 365
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 38/54 (70%)
Query: 26 RECEMDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
R+ +DTY+ SG G QH NK ESA+R+ H+ TGV+ DRSQHKN A+++ +
Sbjct: 236 RDIRVDTYRSSGAGGQHVNKTESAIRITHIATGVVVQCQNDRSQHKNRATAMKM 289
>sp|A8EWG5|RF2_ARCB4 Peptide chain release factor 2 OS=Arcobacter butzleri (strain
RM4018) GN=prfB PE=3 SV=1
Length = 365
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 26 RECEMDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
++ +DTY+ SG G QH NK ESA+R+ H+PTG++ DRSQHKN S+ +
Sbjct: 236 KDIRIDTYRASGAGGQHVNKTESAIRITHIPTGIVVQCQNDRSQHKNKDSAFKM 289
>sp|Q7VIE6|RF2_HELHP Peptide chain release factor 2 OS=Helicobacter hepaticus (strain
ATCC 51449 / 3B1) GN=prfB PE=3 SV=1
Length = 366
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 26 RECEMDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
++ +DTY+ SG G QH NK ESA+R+ H PTG++ DRSQHKN A+++ +
Sbjct: 236 KDIRIDTYRASGAGGQHVNKTESAIRITHFPTGIVVQCQNDRSQHKNKATAMKM 289
>sp|A6Q582|RF2_NITSB Peptide chain release factor 2 OS=Nitratiruptor sp. (strain
SB155-2) GN=prfB PE=3 SV=1
Length = 368
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 39/54 (72%)
Query: 26 RECEMDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
++ +DTY+ SG G QH NK +SA+R+ H+PTG++ DRSQHKN A+++ +
Sbjct: 236 KDIRVDTYRASGAGGQHVNKTDSAIRITHIPTGIVVQCQNDRSQHKNRATAMKM 289
>sp|Q12F86|RF1_POLSJ Peptide chain release factor 1 OS=Polaromonas sp. (strain JS666 /
ATCC BAA-500) GN=prfA PE=3 SV=1
Length = 373
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 39/53 (73%)
Query: 27 ECEMDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
+ +DTY+ SG G QH NK +SAVR+ H+PTG++A +DRSQH+N A ++ +
Sbjct: 231 DLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVAECQDDRSQHRNKAKALQV 283
>sp|A6W1C2|RF1_MARMS Peptide chain release factor 1 OS=Marinomonas sp. (strain MWYL1)
GN=prfA PE=3 SV=1
Length = 362
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 38/50 (76%)
Query: 30 MDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
+DT++ SG G QH NK +SA+RL H+PTGV+ E+RSQHKN A +++L
Sbjct: 226 IDTFRASGAGGQHVNKTDSAIRLTHIPTGVVVECQEERSQHKNRAKAMSL 275
>sp|Q6F9S2|RF1_ACIAD Peptide chain release factor 1 OS=Acinetobacter sp. (strain ADP1)
GN=prfA PE=3 SV=2
Length = 362
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 37/50 (74%)
Query: 30 MDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
+DTY+ SG G QH NK +SAVR+ HVPTGV+ E+RSQHKN A ++ L
Sbjct: 224 IDTYRASGAGGQHINKTDSAVRITHVPTGVVVECQEERSQHKNKAKAMAL 273
>sp|Q89AC4|RF2_BUCBP Peptide chain release factor 2 OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=prfB PE=3 SV=2
Length = 366
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 35/47 (74%)
Query: 26 RECEMDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKN 72
R+ ++D Y+ SG G QH NK ESAVR++H+PTG++ DRSQHKN
Sbjct: 238 RDLKIDVYRASGAGGQHVNKTESAVRIRHLPTGIVVQCQNDRSQHKN 284
>sp|C5CXW3|RF1_VARPS Peptide chain release factor 1 OS=Variovorax paradoxus (strain
S110) GN=prfA PE=3 SV=1
Length = 362
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 30 MDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
+DTY+ SG G QH NK +SAVR+ H+PTG++A +DRSQH+N A ++ +
Sbjct: 224 IDTYRASGAGGQHINKTDSAVRITHIPTGIVAECQDDRSQHRNKAKALQV 273
>sp|Q82TH4|RF1_NITEU Peptide chain release factor 1 OS=Nitrosomonas europaea (strain
ATCC 19718 / NBRC 14298) GN=prfA PE=3 SV=1
Length = 359
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 30 MDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVN------LDAYS 83
+DT++ SG G QH NK +SAVR+ H+PTG++A E RSQHKN A +++ LD
Sbjct: 224 IDTFRASGAGGQHINKTDSAVRITHLPTGIVAECQEGRSQHKNKAQAMSVLIARILDKQV 283
Query: 84 PPPQLLQILPPKSTITSSEVGPQIGPNN 111
Q Q KS + S E +I N
Sbjct: 284 RAQQAEQAATRKSLVGSGERSERIRTYN 311
>sp|A5WFG1|RF1_PSYWF Peptide chain release factor 1 OS=Psychrobacter sp. (strain PRwf-1)
GN=prfA PE=3 SV=1
Length = 364
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 38/53 (71%)
Query: 27 ECEMDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
+ MDT++ SG G QH N +SAVRL H+PTGV+A ++RSQHKN A ++ +
Sbjct: 224 DIRMDTFRSSGAGGQHVNTTDSAVRLTHIPTGVVAECQQERSQHKNRAKAMQM 276
>sp|B2U8V1|RF2_RALPJ Peptide chain release factor 2 OS=Ralstonia pickettii (strain 12J)
GN=prfB PE=3 SV=1
Length = 367
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 30 MDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
+DTY+ SG G QH NK +SAVR+ H+PTG++ DRSQH+N A ++ +
Sbjct: 243 VDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHRNRAEAMTM 292
>sp|Q21FM3|RF1_SACD2 Peptide chain release factor 1 OS=Saccharophagus degradans (strain
2-40 / ATCC 43961 / DSM 17024) GN=prfA PE=3 SV=1
Length = 360
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 30 MDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
+DT++ SG G QH NK +SA+RL H+PTGV+ ++RSQHKN A +++L
Sbjct: 226 IDTFRASGAGGQHVNKTDSAIRLTHIPTGVVVECQDERSQHKNRAKAMSL 275
>sp|B3PJP4|RF1_CELJU Peptide chain release factor 1 OS=Cellvibrio japonicus (strain
Ueda107) GN=prfA PE=3 SV=1
Length = 360
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 38/50 (76%)
Query: 30 MDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
+DTY+ SG G QH NK +SA+R+ H+PTG++ ++RSQHKN A +++L
Sbjct: 226 IDTYRASGAGGQHVNKTDSAIRITHIPTGIVVECQDERSQHKNRARAMSL 275
>sp|Q5QUZ8|RF1_IDILO Peptide chain release factor 1 OS=Idiomarina loihiensis (strain
ATCC BAA-735 / DSM 15497 / L2-TR) GN=prfA PE=3 SV=1
Length = 364
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 30 MDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
+DTY+ SG G QH N+ +SA+RL H+PTGV+ E+RSQHKN A ++++
Sbjct: 227 VDTYRASGAGGQHVNRTDSAIRLTHIPTGVVVECQEERSQHKNRAKAMSV 276
>sp|Q9ZMR1|RF2_HELPJ Peptide chain release factor 2 OS=Helicobacter pylori (strain J99)
GN=prfB PE=3 SV=1
Length = 363
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 34/49 (69%)
Query: 31 DTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
D Y+ SG G QH NK ESAVR+ H PTG++ DRSQHKN AS++ +
Sbjct: 241 DYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASALKM 289
>sp|Q5WUB1|RF1_LEGPL Peptide chain release factor 1 OS=Legionella pneumophila (strain
Lens) GN=prfA PE=3 SV=1
Length = 362
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 30 MDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
+DTY+ SG G QH NK +SA+R+ H+PTGV+ ++RSQHKN A +++L
Sbjct: 226 IDTYRSSGAGGQHVNKTDSAIRITHIPTGVVVECQDERSQHKNRAKAMSL 275
>sp|Q5ZT29|RF1_LEGPH Peptide chain release factor 1 OS=Legionella pneumophila subsp.
pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM
7513) GN=prfA PE=3 SV=1
Length = 362
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 30 MDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
+DTY+ SG G QH NK +SA+R+ H+PTGV+ ++RSQHKN A +++L
Sbjct: 226 IDTYRSSGAGGQHVNKTDSAIRITHIPTGVVVECQDERSQHKNRAKAMSL 275
>sp|Q5X2V3|RF1_LEGPA Peptide chain release factor 1 OS=Legionella pneumophila (strain
Paris) GN=prfA PE=3 SV=1
Length = 362
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 30 MDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
+DTY+ SG G QH NK +SA+R+ H+PTGV+ ++RSQHKN A +++L
Sbjct: 226 IDTYRSSGAGGQHVNKTDSAIRITHIPTGVVVECQDERSQHKNRAKAMSL 275
>sp|A1W163|RF2_CAMJJ Peptide chain release factor 2 OS=Campylobacter jejuni subsp.
jejuni serotype O:23/36 (strain 81-176) GN=prfB PE=3
SV=1
Length = 365
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 30 MDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVN-LDAYSPPPQL 88
+D Y+ SG G QH NK ESAVR+ H PTG++ DRSQHKN A++ L + +L
Sbjct: 240 IDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKATAFKMLKSRLYELEL 299
Query: 89 LQILPPKSTITSSEVG 104
++ +T SE+G
Sbjct: 300 MKQQDSANTGEKSEIG 315
>sp|A5IED7|RF1_LEGPC Peptide chain release factor 1 OS=Legionella pneumophila (strain
Corby) GN=prfA PE=3 SV=1
Length = 362
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 30 MDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
+DTY+ SG G QH NK +SA+R+ H+PTGV+ ++RSQHKN A +++L
Sbjct: 226 IDTYRSSGAGGQHVNKTDSAIRITHIPTGVVVECQDERSQHKNRAKAMSL 275
>sp|B6JPR7|RF2_HELP2 Peptide chain release factor 2 OS=Helicobacter pylori (strain P12)
GN=prfB PE=3 SV=1
Length = 363
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 34/49 (69%)
Query: 31 DTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
D Y+ SG G QH NK ESAVR+ H PTG++ DRSQHKN AS++ +
Sbjct: 241 DYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASALKM 289
>sp|B2US00|RF2_HELPS Peptide chain release factor 2 OS=Helicobacter pylori (strain
Shi470) GN=prfB PE=3 SV=1
Length = 363
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 34/49 (69%)
Query: 31 DTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
D Y+ SG G QH NK ESAVR+ H PTG++ DRSQHKN AS++ +
Sbjct: 241 DYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASALKM 289
>sp|B5Z9U4|RF2_HELPG Peptide chain release factor 2 OS=Helicobacter pylori (strain G27)
GN=prfB PE=3 SV=1
Length = 363
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 34/49 (69%)
Query: 31 DTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
D Y+ SG G QH NK ESAVR+ H PTG++ DRSQHKN AS++ +
Sbjct: 241 DYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASALKM 289
>sp|Q1CUY8|RF2_HELPH Peptide chain release factor 2 OS=Helicobacter pylori (strain
HPAG1) GN=prfB PE=3 SV=1
Length = 363
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 34/49 (69%)
Query: 31 DTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
D Y+ SG G QH NK ESAVR+ H PTG++ DRSQHKN AS++ +
Sbjct: 241 DYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASALKM 289
>sp|Q2W3F8|RF2_MAGSA Peptide chain release factor 2 OS=Magnetospirillum magneticum
(strain AMB-1 / ATCC 700264) GN=prfB PE=3 SV=1
Length = 371
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 37/53 (69%)
Query: 27 ECEMDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
EC +DTY+ SG G QH NK +SAVR+ H+PTG+ +RSQH+N A + ++
Sbjct: 236 ECRIDTYRASGAGGQHINKTDSAVRITHIPTGIAVACQMERSQHQNRARAWDM 288
>sp|Q5HSX6|RF2_CAMJR Peptide chain release factor 2 OS=Campylobacter jejuni (strain
RM1221) GN=prfB PE=3 SV=1
Length = 365
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 30 MDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
+D Y+ SG G QH NK ESAVR+ H PTG++ DRSQHKN A++ +
Sbjct: 240 IDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKATAFKM 289
>sp|Q17YT5|RF2_HELAH Peptide chain release factor 2 OS=Helicobacter acinonychis (strain
Sheeba) GN=prfB PE=3 SV=1
Length = 363
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 34/49 (69%)
Query: 31 DTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
D Y+ SG G QH NK ESAVR+ H PTG++ DRSQHKN AS++ +
Sbjct: 241 DYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASALKM 289
>sp|Q9PMK5|RF2_CAMJE Peptide chain release factor 2 OS=Campylobacter jejuni subsp.
jejuni serotype O:2 (strain NCTC 11168) GN=prfB PE=3
SV=1
Length = 365
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 30 MDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
+D Y+ SG G QH NK ESAVR+ H PTG++ DRSQHKN A++ +
Sbjct: 240 IDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKATAFKM 289
>sp|A8FNC2|RF2_CAMJ8 Peptide chain release factor 2 OS=Campylobacter jejuni subsp.
jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=prfB
PE=3 SV=1
Length = 365
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 30 MDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
+D Y+ SG G QH NK ESAVR+ H PTG++ DRSQHKN A++ +
Sbjct: 240 IDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKATAFKM 289
>sp|A7H5G4|RF2_CAMJD Peptide chain release factor 2 OS=Campylobacter jejuni subsp.
doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=prfB
PE=3 SV=1
Length = 365
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 30 MDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
+D Y+ SG G QH NK ESAVR+ H PTG++ DRSQHKN A++ +
Sbjct: 240 IDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKATAFKM 289
>sp|A4VPB9|RF1_PSEU5 Peptide chain release factor 1 OS=Pseudomonas stutzeri (strain
A1501) GN=prfA PE=3 SV=1
Length = 360
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 37/51 (72%)
Query: 27 ECEMDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSV 77
E +DTY+ SG G QH NK +SA+R+ H+PTG++ E+RSQHKN A ++
Sbjct: 223 ELRIDTYRSSGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQHKNRAKAM 273
>sp|A4SV43|RF1_POLSQ Peptide chain release factor 1 OS=Polynucleobacter necessarius
subsp. asymbioticus (strain DSM 18221 / CIP 109841 /
QLW-P1DMWA-1) GN=prfA PE=3 SV=1
Length = 359
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 27 ECEMDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVN------LD 80
E +DT++ SG G QH NK +SAVR+ H+PTG + +DRSQH+N ++ +D
Sbjct: 221 ELRIDTFRASGAGGQHINKTDSAVRITHIPTGTVVECQDDRSQHRNREQAMKVLVSRIMD 280
Query: 81 AYSPPPQLLQILPPKSTITSSEVGPQIGPNN 111
A L+ KS I S + +I N
Sbjct: 281 AREREKHQLEAQTRKSLIGSGDRSDRIRTYN 311
>sp|B0V7E0|RF1_ACIBY Peptide chain release factor 1 OS=Acinetobacter baumannii (strain
AYE) GN=prfA PE=3 SV=1
Length = 362
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 36/50 (72%)
Query: 30 MDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
+DTY+ SG G QH NK +SAVR+ H+PTG + E+RSQHKN A ++ L
Sbjct: 224 IDTYRASGAGGQHINKTDSAVRITHIPTGTVVECQEERSQHKNKAKAMAL 273
>sp|B7IBA1|RF1_ACIB5 Peptide chain release factor 1 OS=Acinetobacter baumannii (strain
AB0057) GN=prfA PE=3 SV=1
Length = 362
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 36/50 (72%)
Query: 30 MDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
+DTY+ SG G QH NK +SAVR+ H+PTG + E+RSQHKN A ++ L
Sbjct: 224 IDTYRASGAGGQHINKTDSAVRITHIPTGTVVECQEERSQHKNKAKAMAL 273
>sp|B7H0L9|RF1_ACIB3 Peptide chain release factor 1 OS=Acinetobacter baumannii (strain
AB307-0294) GN=prfA PE=3 SV=1
Length = 362
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 36/50 (72%)
Query: 30 MDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
+DTY+ SG G QH NK +SAVR+ H+PTG + E+RSQHKN A ++ L
Sbjct: 224 IDTYRASGAGGQHINKTDSAVRITHIPTGTVVECQEERSQHKNKAKAMAL 273
>sp|A3M6N7|RF1_ACIBT Peptide chain release factor 1 OS=Acinetobacter baumannii (strain
ATCC 17978 / NCDC KC 755) GN=prfA PE=3 SV=2
Length = 362
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 36/50 (72%)
Query: 30 MDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
+DTY+ SG G QH NK +SAVR+ H+PTG + E+RSQHKN A ++ L
Sbjct: 224 IDTYRASGAGGQHINKTDSAVRITHIPTGTVVECQEERSQHKNKAKAMAL 273
>sp|B0VM26|RF1_ACIBS Peptide chain release factor 1 OS=Acinetobacter baumannii (strain
SDF) GN=prfA PE=3 SV=1
Length = 362
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 36/50 (72%)
Query: 30 MDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
+DTY+ SG G QH NK +SAVR+ H+PTG + E+RSQHKN A ++ L
Sbjct: 224 IDTYRASGAGGQHINKTDSAVRITHIPTGTVVECQEERSQHKNKAKAMAL 273
>sp|B2HU82|RF1_ACIBC Peptide chain release factor 1 OS=Acinetobacter baumannii (strain
ACICU) GN=prfA PE=3 SV=1
Length = 362
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 36/50 (72%)
Query: 30 MDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
+DTY+ SG G QH NK +SAVR+ H+PTG + E+RSQHKN A ++ L
Sbjct: 224 IDTYRASGAGGQHINKTDSAVRITHIPTGTVVECQEERSQHKNKAKAMAL 273
>sp|P55999|RF2_HELPY Peptide chain release factor 2 OS=Helicobacter pylori (strain ATCC
700392 / 26695) GN=prfB PE=3 SV=1
Length = 363
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 34/49 (69%)
Query: 31 DTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
D Y+ SG G QH NK ESAVR+ H PTG++ DRSQHKN AS++ +
Sbjct: 241 DYYRSSGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASALKM 289
>sp|A6Q718|RF2_SULNB Peptide chain release factor 2 OS=Sulfurovum sp. (strain NBC37-1)
GN=prfB PE=3 SV=1
Length = 364
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%)
Query: 26 RECEMDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
++ +DTY+ SG G QH NK ESA+R+ H PTG++ DRSQHKN ++++ +
Sbjct: 236 KDLRIDTYRASGAGGQHVNKTESAIRITHEPTGIVVQCQNDRSQHKNKSAAMKM 289
>sp|A9W1A4|RF1_METEP Peptide chain release factor 1 OS=Methylobacterium extorquens
(strain PA1) GN=prfA PE=3 SV=1
Length = 361
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 38/53 (71%)
Query: 27 ECEMDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
+ ++DT + G G QH NK ESA+R+ H+PTGV+ E+RSQHKN A +++L
Sbjct: 222 DLKIDTMRAQGAGGQHVNKTESAIRITHIPTGVVVFVQEERSQHKNRARAMSL 274
>sp|B7L246|RF1_METC4 Peptide chain release factor 1 OS=Methylobacterium chloromethanicum
(strain CM4 / NCIMB 13688) GN=prfA PE=3 SV=1
Length = 361
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 38/53 (71%)
Query: 27 ECEMDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
+ ++DT + G G QH NK ESA+R+ H+PTGV+ E+RSQHKN A +++L
Sbjct: 222 DLKIDTMRAQGAGGQHVNKTESAIRITHIPTGVVVFVQEERSQHKNRARAMSL 274
>sp|A2SD46|RF1_METPP Peptide chain release factor 1 OS=Methylibium petroleiphilum
(strain PM1) GN=prfA PE=3 SV=1
Length = 359
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 38/51 (74%)
Query: 27 ECEMDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSV 77
+ +DTY+ SG G QH NK +SAVR+ H+PTG++A +DRSQH+N A ++
Sbjct: 221 DLRIDTYRASGAGGQHVNKTDSAVRITHLPTGLVAECQDDRSQHRNKAKAM 271
>sp|Q5NZU2|RF2_AROAE Peptide chain release factor 2 OS=Aromatoleum aromaticum (strain
EbN1) GN=prfB PE=3 SV=1
Length = 367
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 36/50 (72%)
Query: 30 MDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
+DTY+ SG G QH NK +SAVR+ H PTGV+ DRSQHKN A ++++
Sbjct: 243 IDTYRASGAGGQHINKTDSAVRITHEPTGVVVQCQNDRSQHKNKAEAMSM 292
>sp|B4EDB1|RF2_BURCJ Peptide chain release factor 2 OS=Burkholderia cepacia (strain
J2315 / LMG 16656) GN=prfB PE=3 SV=1
Length = 367
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 30 MDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
+DTY+ SG G QH NK +SAVR+ H+PTG++ DRSQH+N A ++ +
Sbjct: 243 IDTYRASGAGGQHINKTDSAVRITHMPTGIVVQCQNDRSQHRNRAEAMAM 292
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.126 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,876,502
Number of Sequences: 539616
Number of extensions: 2294139
Number of successful extensions: 5882
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 4918
Number of HSP's gapped (non-prelim): 978
length of query: 169
length of database: 191,569,459
effective HSP length: 109
effective length of query: 60
effective length of database: 132,751,315
effective search space: 7965078900
effective search space used: 7965078900
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)