Query 043121
Match_columns 169
No_of_seqs 201 out of 1200
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 23:04:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043121.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043121hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zbt_A RF-1, peptide chain rel 100.0 1.7E-31 5.8E-36 236.8 5.5 94 17-114 228-327 (371)
2 1rq0_A RF-1, peptide chain rel 100.0 2.6E-31 8.8E-36 233.6 4.9 94 17-114 191-290 (342)
3 2b3t_B RF-1, peptide chain rel 100.0 2.9E-31 1E-35 234.6 4.7 94 17-114 215-314 (360)
4 3d5a_X RF1, peptide chain rele 100.0 1.2E-31 4.1E-36 236.6 0.9 94 17-114 210-309 (354)
5 1gqe_A Release factor 2, RF2; 100.0 7.5E-31 2.6E-35 232.3 4.3 93 17-113 232-329 (365)
6 2ihr_1 Peptide chain release f 100.0 1.1E-30 3.7E-35 231.3 4.9 94 17-114 220-318 (365)
7 2rsm_A Probable peptide chain 100.0 3.5E-29 1.2E-33 191.1 7.6 71 14-88 38-109 (115)
8 1j26_A Immature colon carcinom 99.9 7.2E-26 2.5E-30 172.0 7.4 61 17-81 15-100 (112)
9 2jva_A Peptidyl-tRNA hydrolase 99.9 7.3E-26 2.5E-30 171.0 6.5 63 16-82 7-93 (108)
10 4dh9_Y YAEJ; ribosome, YAEJ, r 99.9 4.5E-24 1.5E-28 167.5 4.8 64 15-82 6-93 (140)
11 3e7l_A Transcriptional regulat 93.5 0.11 3.8E-06 33.9 4.6 35 119-153 22-56 (63)
12 1umq_A Photosynthetic apparatu 92.3 0.2 6.9E-06 35.1 4.7 35 119-153 44-78 (81)
13 1g2h_A Transcriptional regulat 91.4 0.3 1E-05 31.8 4.5 34 119-153 24-57 (61)
14 1ntc_A Protein (nitrogen regul 90.7 0.26 8.9E-06 34.4 3.9 35 119-153 54-88 (91)
15 3oou_A LIN2118 protein; protei 90.3 0.37 1.3E-05 33.6 4.5 51 117-167 6-61 (108)
16 1eto_A FIS, factor for inversi 90.2 0.4 1.4E-05 34.5 4.6 34 120-153 62-95 (98)
17 3mn2_A Probable ARAC family tr 88.4 0.95 3.3E-05 31.4 5.4 50 118-167 4-58 (108)
18 3oio_A Transcriptional regulat 87.9 0.87 3E-05 31.9 5.0 53 115-167 6-63 (113)
19 2k9s_A Arabinose operon regula 87.2 1.2 4.2E-05 30.8 5.4 51 117-167 4-60 (107)
20 3lsg_A Two-component response 85.5 1.7 5.8E-05 29.8 5.4 39 129-167 19-59 (103)
21 1bl0_A Protein (multiple antib 84.6 1.5 5.1E-05 31.5 4.9 53 115-167 10-67 (129)
22 2pij_A Prophage PFL 6 CRO; tra 82.0 1.9 6.6E-05 27.1 4.1 31 121-152 6-36 (67)
23 3mkl_A HTH-type transcriptiona 81.6 2.4 8.3E-05 29.9 5.0 53 115-167 6-62 (120)
24 2glo_A Brinker CG9653-PA; prot 76.3 7.8 0.00027 24.2 5.7 38 122-160 15-56 (59)
25 1u8b_A ADA polyprotein; protei 75.1 2.1 7E-05 30.9 2.9 51 115-165 78-131 (133)
26 1ojl_A Transcriptional regulat 74.9 2.8 9.6E-05 34.5 4.1 33 119-151 271-303 (304)
27 2elh_A CG11849-PA, LD40883P; s 74.1 3.5 0.00012 27.9 3.8 38 119-157 29-66 (87)
28 1tc3_C Protein (TC3 transposas 73.6 9.8 0.00034 21.4 5.5 33 120-153 13-45 (51)
29 2zcm_A Biofilm operon icaabcd 71.0 7.2 0.00025 28.1 5.1 53 111-163 6-61 (192)
30 2x48_A CAG38821; archeal virus 69.8 10 0.00036 22.8 5.0 34 117-151 20-53 (55)
31 2heo_A Z-DNA binding protein 1 69.2 5 0.00017 26.2 3.5 33 119-151 13-47 (67)
32 1jko_C HIN recombinase, DNA-in 69.0 7.1 0.00024 22.5 3.9 35 119-154 12-46 (52)
33 2o8x_A Probable RNA polymerase 66.9 11 0.00038 23.4 4.8 38 114-151 16-53 (70)
34 2a6c_A Helix-turn-helix motif; 66.3 17 0.00058 23.7 5.8 36 118-153 20-55 (83)
35 3oou_A LIN2118 protein; protei 66.1 9.1 0.00031 26.3 4.6 38 116-153 57-95 (108)
36 2xi8_A Putative transcription 65.1 11 0.00039 22.7 4.4 33 121-153 6-38 (66)
37 2l0k_A Stage III sporulation p 64.4 10 0.00035 26.9 4.6 36 118-153 9-44 (93)
38 3hhg_A Transcriptional regulat 64.3 4.7 0.00016 31.0 3.1 26 127-152 15-40 (306)
39 1uxc_A FRUR (1-57), fructose r 64.0 11 0.00038 24.7 4.5 24 131-154 2-25 (65)
40 2esn_A Probable transcriptiona 63.4 4.5 0.00015 31.4 2.8 25 128-152 23-47 (310)
41 4fe7_A Xylose operon regulator 63.2 9.3 0.00032 32.0 4.9 53 115-167 304-361 (412)
42 2lkp_A Transcriptional regulat 62.9 9.7 0.00033 26.4 4.3 32 121-152 37-68 (119)
43 2r1j_L Repressor protein C2; p 62.7 14 0.00048 22.3 4.6 34 119-152 8-41 (68)
44 1r69_A Repressor protein CI; g 62.3 16 0.00054 22.3 4.8 34 120-153 5-38 (69)
45 1zug_A Phage 434 CRO protein; 61.7 15 0.00051 22.5 4.6 34 120-153 7-40 (71)
46 1hlv_A CENP-B, major centromer 60.9 10 0.00036 26.7 4.2 39 120-158 15-54 (131)
47 1adr_A P22 C2 repressor; trans 60.0 16 0.00055 22.6 4.6 34 119-152 8-41 (76)
48 1y7y_A C.AHDI; helix-turn-heli 59.6 18 0.00061 22.3 4.7 35 119-153 16-50 (74)
49 3fzv_A Probable transcriptiona 59.6 4.5 0.00015 31.2 2.1 26 127-152 16-41 (306)
50 3b7h_A Prophage LP1 protein 11 59.2 17 0.00058 22.7 4.6 35 119-153 10-44 (78)
51 3bd1_A CRO protein; transcript 59.1 7.9 0.00027 25.0 3.0 32 121-153 4-35 (79)
52 2b5a_A C.BCLI; helix-turn-heli 58.9 17 0.00058 22.7 4.6 35 119-153 13-47 (77)
53 3ppb_A Putative TETR family tr 58.8 16 0.00054 25.8 4.9 47 115-161 12-61 (195)
54 3lsg_A Two-component response 58.7 15 0.00052 24.8 4.6 36 117-152 56-92 (103)
55 2ijl_A AGR_C_4647P, molybdenum 58.6 6.5 0.00022 29.6 2.9 23 130-152 39-61 (135)
56 3bqz_B HTH-type transcriptiona 58.4 17 0.00059 25.7 5.1 47 116-162 6-55 (194)
57 3f3x_A Transcriptional regulat 58.2 8.2 0.00028 27.1 3.2 33 119-151 40-72 (144)
58 3bs3_A Putative DNA-binding pr 57.7 17 0.00058 22.6 4.4 33 121-153 15-47 (76)
59 3qq6_A HTH-type transcriptiona 57.7 32 0.0011 22.2 5.9 34 119-152 13-46 (78)
60 3omt_A Uncharacterized protein 57.4 17 0.00059 22.8 4.4 33 121-153 13-45 (73)
61 3isp_A HTH-type transcriptiona 57.0 6.5 0.00022 30.5 2.7 26 127-152 18-43 (303)
62 2ovg_A Phage lambda CRO; trans 57.0 12 0.00041 24.7 3.6 21 131-151 15-35 (66)
63 3kz9_A SMCR; transcriptional r 57.0 17 0.00058 25.9 4.8 48 115-162 20-70 (206)
64 2jpc_A SSRB; DNA binding prote 56.8 15 0.00053 22.3 4.0 31 120-151 5-35 (61)
65 2jn6_A Protein CGL2762, transp 56.3 14 0.00049 24.9 4.1 34 119-152 12-46 (97)
66 1pb6_A Hypothetical transcript 55.5 19 0.00066 25.9 4.9 49 115-163 21-72 (212)
67 2qtq_A Transcriptional regulat 55.2 22 0.00076 25.5 5.2 48 115-162 19-69 (213)
68 3qkx_A Uncharacterized HTH-typ 55.2 19 0.00066 25.2 4.8 47 116-162 12-61 (188)
69 2htj_A P fimbrial regulatory p 54.9 20 0.00068 23.5 4.5 32 120-151 4-36 (81)
70 3dpj_A Transcription regulator 54.7 20 0.00068 25.5 4.9 47 116-162 12-61 (194)
71 3lhq_A Acrab operon repressor 54.6 20 0.00067 25.7 4.8 47 116-162 18-67 (220)
72 3dcf_A Transcriptional regulat 54.1 20 0.0007 25.8 4.9 49 115-163 34-85 (218)
73 3f1b_A TETR-like transcription 53.9 21 0.00072 25.4 4.9 47 115-161 17-66 (203)
74 1r1u_A CZRA, repressor protein 53.6 16 0.00056 25.0 4.1 32 120-151 30-61 (106)
75 2d6y_A Putative TETR family re 53.6 24 0.00081 25.9 5.3 48 115-162 11-61 (202)
76 2i10_A Putative TETR transcrip 53.4 28 0.00096 25.4 5.6 49 113-161 12-63 (202)
77 3f0c_A TETR-molecule A, transc 53.2 21 0.00071 25.9 4.8 48 115-162 14-64 (216)
78 2g7s_A Transcriptional regulat 53.1 17 0.00059 25.5 4.3 47 116-162 12-61 (194)
79 1fse_A GERE; helix-turn-helix 53.0 32 0.0011 21.4 5.2 38 113-151 11-48 (74)
80 3knw_A Putative transcriptiona 53.0 22 0.00074 25.6 4.8 49 115-163 17-68 (212)
81 3bni_A Putative TETR-family tr 52.9 20 0.0007 26.8 4.9 47 116-162 47-96 (229)
82 1y6u_A XIS, excisionase from t 52.9 10 0.00035 25.5 2.8 23 131-153 18-40 (70)
83 2k9q_A Uncharacterized protein 52.9 24 0.00082 22.3 4.6 34 120-153 6-39 (77)
84 3tgn_A ADC operon repressor AD 52.5 20 0.00068 25.0 4.5 39 113-151 35-73 (146)
85 3oio_A Transcriptional regulat 52.5 21 0.00073 24.5 4.6 38 116-153 59-97 (113)
86 3kz3_A Repressor protein CI; f 52.4 31 0.001 22.1 5.1 33 121-153 17-49 (80)
87 1y0u_A Arsenical resistance op 52.4 19 0.00066 24.1 4.3 32 119-151 34-65 (96)
88 2ef8_A C.ECOT38IS, putative tr 52.4 20 0.00069 22.7 4.2 37 117-153 11-47 (84)
89 3hug_A RNA polymerase sigma fa 52.3 25 0.00086 23.5 4.8 36 116-151 40-75 (92)
90 2wiu_B HTH-type transcriptiona 52.3 24 0.00083 22.6 4.6 36 117-152 13-48 (88)
91 3b81_A Transcriptional regulat 52.1 15 0.00051 26.3 3.8 48 115-162 14-64 (203)
92 2hyt_A TETR-family transcripti 52.1 24 0.00081 25.6 5.0 47 116-162 16-65 (197)
93 2o3f_A Putative HTH-type trans 51.8 7.1 0.00024 28.0 2.0 46 107-152 12-62 (111)
94 3lwj_A Putative TETR-family tr 51.7 24 0.00082 25.2 4.9 48 116-163 16-66 (202)
95 3cwr_A Transcriptional regulat 51.6 18 0.00063 25.7 4.2 49 115-163 20-71 (208)
96 3gzi_A Transcriptional regulat 51.0 24 0.00083 25.5 4.9 48 115-162 20-70 (218)
97 3bru_A Regulatory protein, TET 50.7 24 0.00081 25.6 4.8 48 115-162 33-83 (222)
98 3on4_A Transcriptional regulat 50.7 20 0.00067 25.2 4.2 48 115-162 13-63 (191)
99 3anp_C Transcriptional repress 50.7 31 0.0011 24.9 5.5 46 116-161 13-61 (204)
100 2eh3_A Transcriptional regulat 50.5 25 0.00086 24.9 4.8 46 116-161 6-54 (179)
101 2jt1_A PEFI protein; solution 50.3 27 0.00093 23.7 4.7 30 118-147 6-42 (77)
102 2ibd_A Possible transcriptiona 50.0 25 0.00087 25.5 4.9 46 115-160 17-65 (204)
103 1on2_A Transcriptional regulat 49.9 26 0.00087 24.8 4.8 35 117-151 9-44 (142)
104 2q24_A Putative TETR family tr 49.8 26 0.00089 25.1 4.9 48 115-162 18-67 (194)
105 2gen_A Probable transcriptiona 49.6 28 0.00095 25.3 5.0 48 115-162 10-60 (197)
106 3g7r_A Putative transcriptiona 49.6 25 0.00085 26.1 4.8 49 115-163 38-89 (221)
107 3q0w_A HTH-type transcriptiona 49.5 22 0.00074 26.7 4.5 48 116-163 48-98 (236)
108 3c2b_A Transcriptional regulat 49.4 24 0.00081 25.7 4.6 49 115-163 18-69 (221)
109 2id3_A Putative transcriptiona 49.4 23 0.00078 26.4 4.6 48 116-163 44-94 (225)
110 2cw1_A SN4M; lambda CRO fold, 49.3 21 0.00072 23.6 3.9 23 131-153 15-37 (65)
111 3gbg_A TCP pilus virulence reg 49.2 17 0.00059 28.5 4.0 51 117-167 170-224 (276)
112 3egq_A TETR family transcripti 49.0 16 0.00054 25.7 3.5 47 116-162 8-57 (170)
113 2zb9_A Putative transcriptiona 48.9 21 0.00072 26.0 4.3 47 115-161 26-75 (214)
114 3v6g_A Probable transcriptiona 48.8 26 0.0009 26.1 4.9 48 115-162 17-67 (208)
115 3bhq_A Transcriptional regulat 48.8 31 0.0011 25.2 5.2 47 116-162 16-65 (211)
116 3vib_A MTRR; helix-turn-helix 48.7 27 0.00094 25.4 4.9 46 116-161 14-62 (210)
117 3hta_A EBRA repressor; TETR fa 48.6 23 0.0008 26.3 4.6 49 115-163 31-82 (217)
118 2xdn_A HTH-type transcriptiona 48.6 24 0.00083 25.7 4.6 47 116-162 15-64 (210)
119 1qgp_A Protein (double strande 48.4 18 0.0006 24.3 3.5 33 119-151 17-53 (77)
120 3cuo_A Uncharacterized HTH-typ 48.3 11 0.00039 24.7 2.5 32 120-151 28-60 (99)
121 3f6w_A XRE-family like protein 48.3 34 0.0011 21.8 4.8 36 118-153 16-51 (83)
122 2o7t_A Transcriptional regulat 48.2 21 0.00073 25.7 4.2 47 116-162 12-61 (199)
123 2ict_A Antitoxin HIGA; helix-t 48.0 32 0.0011 22.6 4.8 34 120-153 12-45 (94)
124 2wui_A MEXZ, transcriptional r 48.0 28 0.00094 25.5 4.8 48 115-162 14-64 (210)
125 3trb_A Virulence-associated pr 48.0 35 0.0012 23.8 5.2 31 123-153 21-51 (104)
126 1qbj_A Protein (double-strande 48.0 25 0.00084 24.1 4.2 33 119-151 13-49 (81)
127 2yve_A Transcriptional regulat 47.9 28 0.00096 25.1 4.8 47 116-162 8-57 (185)
128 3frq_A Repressor protein MPHR( 47.9 22 0.00077 25.4 4.2 50 114-163 10-62 (195)
129 1r1t_A Transcriptional repress 47.8 16 0.00054 26.2 3.4 31 121-151 51-81 (122)
130 3s5r_A Transcriptional regulat 47.8 26 0.00088 25.2 4.6 49 115-163 13-64 (216)
131 2nx4_A Transcriptional regulat 47.8 29 0.00099 25.1 4.9 46 116-161 14-62 (194)
132 1ui5_A A-factor receptor homol 47.7 28 0.00095 25.8 4.9 46 115-160 12-60 (215)
133 2dg8_A Putative TETR-family tr 47.7 22 0.00075 25.6 4.2 48 115-162 12-62 (193)
134 3t76_A VANU, transcriptional r 47.6 36 0.0012 23.2 5.0 34 120-153 28-61 (88)
135 3gbg_A TCP pilus virulence reg 47.3 25 0.00084 27.5 4.7 37 117-153 221-258 (276)
136 2k9s_A Arabinose operon regula 47.1 30 0.001 23.5 4.6 36 117-152 57-93 (107)
137 3col_A Putative transcription 47.0 16 0.00054 25.8 3.2 48 115-162 13-63 (196)
138 3he0_A Transcriptional regulat 46.8 21 0.00071 25.3 3.9 48 115-162 14-64 (196)
139 3vp5_A Transcriptional regulat 46.7 30 0.001 25.1 4.8 45 116-160 16-63 (189)
140 3dew_A Transcriptional regulat 46.7 23 0.00079 25.0 4.1 49 115-163 11-62 (206)
141 3bro_A Transcriptional regulat 46.6 35 0.0012 23.5 4.9 35 117-151 35-72 (141)
142 2fq4_A Transcriptional regulat 46.5 31 0.0011 24.8 4.9 45 115-159 15-62 (192)
143 1b0n_A Protein (SINR protein); 46.2 47 0.0016 22.2 5.5 32 121-152 6-37 (111)
144 2oqg_A Possible transcriptiona 46.2 25 0.00086 23.8 4.1 32 120-151 25-56 (114)
145 1s7o_A Hypothetical UPF0122 pr 46.2 34 0.0012 24.4 5.0 39 114-152 23-61 (113)
146 2np5_A Transcriptional regulat 46.1 24 0.00083 25.8 4.2 48 115-162 12-62 (203)
147 2f07_A YVDT; helix-turn-helix, 46.1 41 0.0014 24.3 5.5 47 115-161 13-62 (197)
148 3mnl_A KSTR, transcriptional r 46.0 16 0.00054 26.1 3.1 48 116-163 24-74 (203)
149 2hku_A A putative transcriptio 45.8 36 0.0012 24.8 5.1 47 115-161 23-71 (215)
150 1je8_A Nitrate/nitrite respons 45.3 28 0.00097 23.0 4.1 37 114-151 22-58 (82)
151 2jj7_A Hemolysin II regulatory 45.1 20 0.00069 25.4 3.6 47 116-162 11-60 (186)
152 1neq_A DNA-binding protein NER 45.0 42 0.0015 22.1 5.0 34 119-152 12-45 (74)
153 3mzy_A RNA polymerase sigma-H 44.8 32 0.0011 24.0 4.6 32 120-152 116-147 (164)
154 1zoq_C CREB-binding protein, i 44.8 17 0.00058 23.3 2.7 25 144-168 20-44 (47)
155 2h09_A Transcriptional regulat 44.7 33 0.0011 24.6 4.7 34 118-151 42-76 (155)
156 3mvp_A TETR/ACRR transcription 44.6 27 0.00094 25.0 4.3 48 116-163 30-80 (217)
157 3s8q_A R-M controller protein; 44.3 42 0.0014 21.3 4.7 35 119-153 14-48 (82)
158 3cec_A Putative antidote prote 44.2 46 0.0016 22.3 5.2 34 120-153 22-55 (104)
159 3rd3_A Probable transcriptiona 44.2 19 0.00065 25.5 3.3 48 115-162 13-63 (197)
160 2zcx_A SCO7815, TETR-family tr 44.2 33 0.0011 26.0 4.9 48 115-162 26-76 (231)
161 3c57_A Two component transcrip 44.1 31 0.0011 23.4 4.3 38 113-151 27-64 (95)
162 2kpj_A SOS-response transcript 44.0 25 0.00087 23.3 3.7 35 119-153 12-46 (94)
163 3ni7_A Bacterial regulatory pr 44.0 33 0.0011 25.8 4.8 47 115-161 10-59 (213)
164 3ljl_A Transcriptional regulat 44.0 23 0.00079 25.0 3.7 47 116-162 18-67 (156)
165 2k27_A Paired box protein PAX- 44.0 88 0.003 22.5 7.1 35 118-153 31-65 (159)
166 2rek_A Putative TETR-family tr 43.9 32 0.0011 24.7 4.5 47 116-162 20-68 (199)
167 2guh_A Putative TETR-family tr 43.9 31 0.0011 25.8 4.6 47 115-161 42-91 (214)
168 1rzs_A Antirepressor, regulato 43.9 23 0.00078 22.3 3.3 31 125-155 6-36 (61)
169 1sfx_A Conserved hypothetical 43.8 43 0.0015 21.8 4.9 33 119-151 23-56 (109)
170 2ewt_A BLDD, putative DNA-bind 43.7 44 0.0015 20.4 4.6 35 119-153 11-47 (71)
171 2qko_A Possible transcriptiona 43.6 26 0.00089 25.6 4.1 49 115-163 31-82 (215)
172 3cjd_A Transcriptional regulat 43.4 28 0.00097 25.4 4.3 47 116-162 16-65 (198)
173 3mn2_A Probable ARAC family tr 43.3 31 0.0011 23.4 4.2 38 116-153 54-94 (108)
174 1vi0_A Transcriptional regulat 43.2 29 0.00098 25.5 4.3 47 115-161 11-60 (206)
175 1sgm_A Putative HTH-type trans 43.2 26 0.00089 24.6 3.9 46 115-160 9-58 (191)
176 3qbm_A TETR transcriptional re 43.1 25 0.00086 24.9 3.8 47 116-162 11-60 (199)
177 3jsj_A Putative TETR-family tr 43.1 39 0.0014 23.9 4.9 49 115-163 12-62 (190)
178 4dyq_A Gene 1 protein; GP1, oc 42.9 51 0.0017 24.2 5.6 49 117-166 17-66 (140)
179 3g1o_A Transcriptional regulat 42.5 21 0.00071 27.2 3.4 49 115-163 46-97 (255)
180 3pas_A TETR family transcripti 42.3 20 0.00069 25.2 3.2 47 116-162 12-61 (195)
181 2w53_A Repressor, SMet; antibi 42.3 26 0.00087 25.7 3.9 47 115-161 14-63 (219)
182 2l8n_A Transcriptional repress 42.3 15 0.00051 24.2 2.3 24 131-154 11-34 (67)
183 1jgs_A Multiple antibiotic res 42.2 49 0.0017 22.6 5.1 32 120-151 38-70 (138)
184 1uth_A LYSR-type regulatory pr 42.2 5.3 0.00018 31.5 0.0 25 128-152 27-51 (315)
185 4aci_A HTH-type transcriptiona 42.1 24 0.00081 25.1 3.5 49 115-163 17-68 (191)
186 3mkl_A HTH-type transcriptiona 42.0 27 0.00093 24.3 3.8 44 116-159 58-106 (120)
187 1d5y_A ROB transcription facto 41.9 16 0.00055 28.8 2.8 41 127-167 17-59 (292)
188 2ras_A Transcriptional regulat 41.8 21 0.00072 25.9 3.3 47 116-162 15-64 (212)
189 2fd5_A Transcriptional regulat 41.8 21 0.00072 25.2 3.2 47 116-162 11-60 (180)
190 3bqy_A Putative TETR family tr 41.8 30 0.001 26.2 4.3 47 116-162 6-55 (209)
191 2nnn_A Probable transcriptiona 41.7 35 0.0012 23.3 4.3 32 120-151 42-74 (140)
192 2pz9_A Putative regulatory pro 41.4 20 0.00068 26.7 3.2 49 114-162 32-83 (226)
193 3vpr_A Transcriptional regulat 41.4 59 0.002 23.1 5.7 45 116-160 7-55 (190)
194 1u2w_A CADC repressor, cadmium 41.3 20 0.00067 25.4 3.0 32 120-151 46-78 (122)
195 1pdn_C Protein (PRD paired); p 41.2 39 0.0013 22.7 4.4 33 119-152 24-56 (128)
196 2hin_A GP39, repressor protein 41.2 30 0.001 23.3 3.7 29 123-152 5-33 (71)
197 1xsv_A Hypothetical UPF0122 pr 41.1 41 0.0014 23.8 4.7 37 115-151 27-63 (113)
198 3npi_A TETR family regulatory 41.0 31 0.0011 26.1 4.2 50 114-163 20-72 (251)
199 1oyi_A Double-stranded RNA-bin 40.8 16 0.00054 25.6 2.3 37 115-151 16-52 (82)
200 3ech_A MEXR, multidrug resista 40.6 43 0.0015 23.3 4.7 33 119-151 40-73 (142)
201 1bl0_A Protein (multiple antib 40.6 41 0.0014 23.7 4.6 36 117-152 64-100 (129)
202 2dg7_A Putative transcriptiona 40.4 19 0.00064 25.9 2.8 45 115-159 10-57 (195)
203 1x3u_A Transcriptional regulat 40.4 39 0.0014 21.3 4.1 32 118-150 21-52 (79)
204 2oi8_A Putative regulatory pro 40.3 28 0.00095 26.2 3.8 48 115-162 19-69 (216)
205 3eus_A DNA-binding protein; st 40.2 34 0.0012 22.4 3.9 37 117-153 15-51 (86)
206 3pqk_A Biofilm growth-associat 40.2 29 0.00099 23.3 3.6 32 120-151 27-58 (102)
207 3cdl_A Transcriptional regulat 40.1 30 0.001 25.2 3.9 47 115-161 12-61 (203)
208 1ku9_A Hypothetical protein MJ 40.0 30 0.001 23.8 3.7 38 114-151 24-63 (152)
209 1lmb_3 Protein (lambda repress 39.9 48 0.0017 21.4 4.6 29 125-153 26-54 (92)
210 3loc_A HTH-type transcriptiona 39.9 23 0.00078 25.4 3.2 46 116-161 22-70 (212)
211 1or7_A Sigma-24, RNA polymeras 39.9 41 0.0014 24.4 4.7 33 119-151 146-178 (194)
212 1rkt_A Protein YFIR; transcrip 39.8 30 0.001 25.2 3.8 45 116-160 16-63 (205)
213 3rh2_A Hypothetical TETR-like 39.8 35 0.0012 24.7 4.2 47 116-162 7-56 (212)
214 3oop_A LIN2960 protein; protei 39.8 43 0.0015 23.2 4.6 33 119-151 40-73 (143)
215 1u78_A TC3 transposase, transp 39.6 58 0.002 22.5 5.2 32 120-152 14-45 (141)
216 1k78_A Paired box protein PAX5 39.6 37 0.0013 24.2 4.3 33 119-152 39-71 (149)
217 1ub9_A Hypothetical protein PH 39.5 24 0.00083 23.0 3.1 31 121-151 21-52 (100)
218 2w7n_A TRFB transcriptional re 39.4 50 0.0017 23.7 4.9 44 113-156 18-61 (101)
219 2jsc_A Transcriptional regulat 39.1 24 0.00083 24.8 3.2 32 120-151 25-56 (118)
220 2qwt_A Transcriptional regulat 39.0 49 0.0017 23.9 4.9 47 116-162 17-65 (196)
221 2gfn_A HTH-type transcriptiona 39.0 39 0.0013 24.8 4.5 48 115-162 12-62 (209)
222 2qib_A TETR-family transcripti 38.9 35 0.0012 25.5 4.2 47 116-162 17-66 (231)
223 1lj9_A Transcriptional regulat 38.9 36 0.0012 23.6 4.0 31 121-151 34-65 (144)
224 2zkz_A Transcriptional repress 38.8 32 0.0011 23.3 3.7 30 123-152 35-64 (99)
225 1j9i_A GPNU1 DBD;, terminase s 38.7 21 0.00072 22.8 2.5 23 131-153 4-26 (68)
226 3crj_A Transcription regulator 38.2 32 0.0011 25.0 3.8 46 116-161 18-66 (199)
227 1zk8_A Transcriptional regulat 38.2 21 0.00072 25.2 2.7 48 115-162 11-61 (183)
228 2rae_A Transcriptional regulat 38.0 24 0.00082 25.4 3.1 47 114-160 19-68 (207)
229 3e7q_A Transcriptional regulat 38.0 25 0.00086 25.1 3.1 47 116-162 18-67 (215)
230 2kko_A Possible transcriptiona 37.9 21 0.00071 24.8 2.6 31 121-151 30-60 (108)
231 2opt_A Actii protein; helical 37.8 41 0.0014 26.1 4.6 48 115-162 9-59 (234)
232 1s3j_A YUSO protein; structura 37.6 41 0.0014 23.6 4.2 32 120-151 41-73 (155)
233 3k0l_A Repressor protein; heli 37.5 54 0.0019 23.4 4.9 32 120-151 50-82 (162)
234 2xvc_A ESCRT-III, SSO0910; cel 37.4 44 0.0015 22.3 3.9 34 119-152 13-48 (59)
235 2g7l_A TETR-family transcripti 37.3 25 0.00086 27.5 3.3 50 113-162 20-72 (243)
236 3g3z_A NMB1585, transcriptiona 37.2 63 0.0022 22.4 5.1 33 119-151 34-67 (145)
237 3eco_A MEPR; mutlidrug efflux 37.1 36 0.0012 23.4 3.8 33 119-151 34-69 (139)
238 2fbi_A Probable transcriptiona 37.1 36 0.0012 23.3 3.8 32 120-151 40-72 (142)
239 3bpv_A Transcriptional regulat 37.1 52 0.0018 22.4 4.6 33 119-151 32-65 (138)
240 2rdp_A Putative transcriptiona 37.0 62 0.0021 22.4 5.1 32 120-151 46-78 (150)
241 2p7v_B Sigma-70, RNA polymeras 37.0 49 0.0017 20.6 4.1 37 115-151 7-47 (68)
242 2fbq_A Probable transcriptiona 37.0 54 0.0018 24.6 5.0 46 116-161 11-59 (235)
243 3bjb_A Probable transcriptiona 36.9 40 0.0014 24.8 4.2 47 116-162 26-75 (207)
244 1rp3_A RNA polymerase sigma fa 36.9 50 0.0017 24.6 4.8 37 115-151 189-225 (239)
245 3nrv_A Putative transcriptiona 36.9 55 0.0019 22.7 4.8 33 119-151 43-76 (148)
246 2oer_A Probable transcriptiona 36.8 29 0.00098 25.6 3.4 48 115-162 27-77 (214)
247 3fm5_A Transcriptional regulat 36.8 47 0.0016 23.3 4.4 32 120-151 43-76 (150)
248 3r0a_A Putative transcriptiona 36.6 38 0.0013 24.0 3.9 35 117-151 27-64 (123)
249 4fx0_A Probable transcriptiona 36.5 33 0.0011 24.8 3.6 32 121-152 38-75 (148)
250 2y2z_A SIM16, SIMR, putative r 36.5 32 0.0011 27.5 3.8 50 113-162 28-80 (267)
251 3fiw_A Putative TETR-family tr 36.3 26 0.00088 26.6 3.1 51 113-163 26-79 (211)
252 3aqt_A Bacterial regulatory pr 36.3 21 0.00073 27.1 2.6 46 116-161 50-98 (245)
253 4hku_A LMO2814 protein, TETR t 36.2 22 0.00077 25.5 2.6 47 115-161 10-59 (178)
254 1ku3_A Sigma factor SIGA; heli 36.0 69 0.0024 20.2 4.8 38 114-151 11-52 (73)
255 2iai_A Putative transcriptiona 36.0 29 0.001 25.8 3.3 48 115-162 33-83 (230)
256 1x57_A Endothelial differentia 35.8 56 0.0019 21.2 4.4 35 118-152 15-49 (91)
257 2d1h_A ST1889, 109AA long hypo 35.6 37 0.0013 22.2 3.5 31 121-151 27-58 (109)
258 2obp_A Putative DNA-binding pr 35.5 65 0.0022 22.8 4.9 37 115-151 15-58 (96)
259 3ivp_A Putative transposon-rel 35.4 95 0.0032 21.4 5.8 41 113-153 9-49 (126)
260 3bdd_A Regulatory protein MARR 35.3 44 0.0015 22.9 4.0 32 120-151 35-67 (142)
261 2rnj_A Response regulator prot 35.2 42 0.0015 22.3 3.8 37 114-151 30-66 (91)
262 3nrg_A TETR family transcripti 35.2 20 0.0007 25.8 2.3 47 116-162 17-66 (217)
263 2pg4_A Uncharacterized protein 35.2 34 0.0012 22.7 3.3 31 121-151 20-53 (95)
264 2ao9_A Phage protein; structur 35.2 48 0.0016 25.7 4.5 34 129-162 48-81 (155)
265 3iwf_A Transcription regulator 35.1 15 0.00052 26.2 1.5 26 127-152 33-58 (107)
266 2l49_A C protein; P2 bacteriop 35.1 57 0.0019 21.4 4.4 32 121-152 9-40 (99)
267 3cta_A Riboflavin kinase; stru 34.6 25 0.00085 27.4 2.8 23 130-152 28-50 (230)
268 2g3b_A Putative TETR-family tr 34.6 35 0.0012 25.1 3.5 46 116-161 7-55 (208)
269 2a61_A Transcriptional regulat 34.6 56 0.0019 22.4 4.5 32 120-151 37-69 (145)
270 2hxi_A Putative transcriptiona 34.4 40 0.0014 26.2 4.0 49 114-162 31-82 (241)
271 4hbl_A Transcriptional regulat 34.4 57 0.002 22.9 4.6 33 119-151 44-77 (149)
272 2gxg_A 146AA long hypothetical 34.3 52 0.0018 22.6 4.3 32 120-151 41-72 (146)
273 2o38_A Hypothetical protein; a 34.3 66 0.0023 22.9 4.9 36 118-153 42-77 (120)
274 2hr3_A Probable transcriptiona 34.2 47 0.0016 23.0 4.0 33 119-151 38-72 (147)
275 3jth_A Transcription activator 34.2 21 0.00073 23.8 2.1 31 121-151 28-58 (98)
276 3kkd_A Transcriptional regulat 34.2 28 0.00095 25.9 2.9 49 115-163 38-89 (237)
277 3ccy_A Putative TETR-family tr 34.1 30 0.001 25.0 3.0 46 115-160 17-65 (203)
278 3nnr_A Transcriptional regulat 34.0 48 0.0017 24.3 4.2 47 116-162 9-58 (228)
279 2hxo_A Putative TETR-family tr 33.9 30 0.001 26.7 3.2 49 114-162 18-69 (237)
280 1b9m_A Protein (mode); DNA-bin 33.9 25 0.00085 27.6 2.7 24 128-151 33-56 (265)
281 2x4h_A Hypothetical protein SS 33.9 49 0.0017 23.1 4.1 21 131-151 33-53 (139)
282 3kkc_A TETR family transcripti 33.9 26 0.00089 24.5 2.6 46 116-161 16-64 (177)
283 3fmy_A HTH-type transcriptiona 33.2 61 0.0021 20.5 4.2 32 121-152 16-47 (73)
284 3c07_A Putative TETR-family tr 33.2 60 0.002 25.4 4.9 47 115-161 44-93 (273)
285 2hyj_A Putative TETR-family tr 33.0 34 0.0012 24.9 3.2 45 116-160 16-63 (200)
286 1z7u_A Hypothetical protein EF 32.6 50 0.0017 22.8 3.9 31 121-151 27-58 (112)
287 3nqo_A MARR-family transcripti 32.6 53 0.0018 24.5 4.3 34 118-151 43-79 (189)
288 3eup_A Transcriptional regulat 32.3 19 0.00064 25.7 1.6 47 116-162 15-64 (204)
289 3f52_A CLP gene regulator (CLG 32.3 75 0.0026 21.6 4.8 35 119-153 31-65 (117)
290 2qvo_A Uncharacterized protein 32.2 51 0.0017 22.0 3.8 22 130-151 31-52 (95)
291 2qww_A Transcriptional regulat 32.1 49 0.0017 23.1 3.9 32 120-151 45-77 (154)
292 1z4h_A TORI, TOR inhibition pr 32.0 35 0.0012 21.8 2.8 22 131-152 12-33 (66)
293 2rn7_A IS629 ORFA; helix, all 32.0 36 0.0012 23.2 3.0 23 130-152 31-53 (108)
294 3s2w_A Transcriptional regulat 32.0 45 0.0015 23.7 3.7 31 121-151 55-86 (159)
295 2iu5_A DHAS, YCEG, HTH-type dh 32.0 28 0.00095 25.1 2.5 48 115-162 16-66 (195)
296 3vk0_A NHTF, transcriptional r 32.0 68 0.0023 22.0 4.5 36 118-153 23-58 (114)
297 3cdh_A Transcriptional regulat 31.9 54 0.0018 23.0 4.1 32 120-151 47-79 (155)
298 3op9_A PLI0006 protein; struct 31.7 78 0.0027 21.4 4.8 33 120-152 13-45 (114)
299 3him_A Probable transcriptiona 31.7 24 0.00081 25.2 2.1 47 115-161 19-68 (211)
300 3f6o_A Probable transcriptiona 31.7 28 0.00095 24.4 2.4 32 120-151 22-53 (118)
301 2eth_A Transcriptional regulat 31.7 61 0.0021 22.8 4.3 32 120-151 48-80 (154)
302 1xn7_A Hypothetical protein YH 31.7 71 0.0024 21.5 4.5 33 118-150 4-37 (78)
303 1z0x_A Transcriptional regulat 31.4 46 0.0016 25.1 3.8 49 115-163 8-60 (220)
304 3kxa_A NGO0477 protein, putati 31.2 63 0.0021 23.6 4.4 32 122-153 74-105 (141)
305 2xpw_A Tetracycline repressor 31.0 64 0.0022 24.2 4.6 48 115-162 6-56 (207)
306 2r0q_C Putative transposon TN5 30.9 75 0.0026 24.3 5.0 35 118-153 165-199 (209)
307 2fbh_A Transcriptional regulat 30.6 65 0.0022 22.0 4.3 31 121-151 42-74 (146)
308 2id6_A Transcriptional regulat 30.5 43 0.0015 24.2 3.4 47 115-161 8-57 (202)
309 3bja_A Transcriptional regulat 30.5 47 0.0016 22.6 3.5 32 120-151 37-69 (139)
310 3on2_A Probable transcriptiona 30.2 16 0.00055 25.8 0.9 48 115-162 15-65 (199)
311 1tty_A Sigma-A, RNA polymerase 30.2 91 0.0031 20.5 4.8 37 114-150 19-59 (87)
312 1gdt_A GD resolvase, protein ( 30.2 50 0.0017 24.7 3.8 32 120-152 150-181 (183)
313 3kp7_A Transcriptional regulat 30.2 51 0.0017 23.1 3.7 31 121-151 43-73 (151)
314 2cg4_A Regulatory protein ASNC 29.9 93 0.0032 22.3 5.1 35 117-151 9-44 (152)
315 1hqc_A RUVB; extended AAA-ATPa 29.6 55 0.0019 25.8 4.1 32 121-152 253-287 (324)
316 1t33_A Putative transcriptiona 29.6 98 0.0033 22.3 5.2 46 116-161 16-63 (224)
317 3geu_A Intercellular adhesion 29.4 22 0.00076 25.3 1.6 47 116-162 7-56 (189)
318 2pex_A Transcriptional regulat 29.1 79 0.0027 22.1 4.6 32 120-151 51-83 (153)
319 1y9q_A Transcriptional regulat 28.6 78 0.0027 23.4 4.6 34 119-152 14-47 (192)
320 3jw4_A Transcriptional regulat 28.3 55 0.0019 22.9 3.6 33 119-151 44-79 (148)
321 3u2r_A Regulatory protein MARR 28.1 49 0.0017 23.8 3.3 33 119-151 49-84 (168)
322 1r71_A Transcriptional repress 28.1 98 0.0034 24.0 5.3 42 121-162 44-88 (178)
323 2ppx_A AGR_C_3184P, uncharacte 28.1 74 0.0025 21.2 4.1 32 121-152 35-66 (99)
324 1vig_A Vigilin; RNA-binding pr 28.0 28 0.00097 22.7 1.8 40 37-81 21-67 (71)
325 3deu_A Transcriptional regulat 28.0 82 0.0028 22.8 4.6 33 119-151 56-90 (166)
326 2cfx_A HTH-type transcriptiona 28.0 78 0.0027 22.6 4.4 33 119-151 8-41 (144)
327 3g5g_A Regulatory protein; tra 28.0 92 0.0032 21.1 4.6 35 119-153 31-65 (99)
328 2hzt_A Putative HTH-type trans 27.9 49 0.0017 22.6 3.2 30 122-151 20-50 (107)
329 3ulq_B Transcriptional regulat 27.9 85 0.0029 21.2 4.3 37 114-151 30-66 (90)
330 2bnm_A Epoxidase; oxidoreducta 27.5 82 0.0028 23.3 4.6 34 119-152 13-46 (198)
331 1zs4_A Regulatory protein CII; 27.5 58 0.002 22.9 3.4 33 119-153 16-48 (83)
332 3bj6_A Transcriptional regulat 27.5 90 0.0031 21.6 4.6 32 120-151 44-76 (152)
333 3mlf_A Transcriptional regulat 27.4 81 0.0028 21.8 4.3 33 121-153 28-60 (111)
334 1jhg_A Trp operon repressor; c 27.0 76 0.0026 22.8 4.1 29 121-149 50-78 (101)
335 3qqa_A CMER; alpha-helical, he 26.6 22 0.00076 25.6 1.2 47 116-162 23-72 (216)
336 2w25_A Probable transcriptiona 26.5 97 0.0033 22.1 4.7 34 118-151 9-43 (150)
337 2fbk_A Transcriptional regulat 26.4 51 0.0017 24.2 3.2 33 119-151 72-108 (181)
338 1zx4_A P1 PARB, plasmid partit 26.4 77 0.0026 25.2 4.4 27 126-152 21-47 (192)
339 2frh_A SARA, staphylococcal ac 26.1 62 0.0021 22.5 3.5 32 120-151 41-75 (127)
340 2cyy_A Putative HTH-type trans 26.0 88 0.003 22.5 4.4 33 119-151 10-43 (151)
341 3rqi_A Response regulator prot 25.9 98 0.0033 22.2 4.7 37 118-154 145-181 (184)
342 2eby_A Putative HTH-type trans 25.9 53 0.0018 22.3 3.0 30 124-153 19-48 (113)
343 2fa5_A Transcriptional regulat 25.9 95 0.0033 21.8 4.5 32 120-151 53-85 (162)
344 4fe7_A Xylose operon regulator 25.9 79 0.0027 26.2 4.6 42 118-159 359-405 (412)
345 2g7g_A RHA04620, putative tran 25.7 60 0.0021 24.4 3.6 49 114-162 13-62 (213)
346 4ich_A Transcriptional regulat 25.7 74 0.0025 25.2 4.2 47 116-162 124-173 (311)
347 1vz0_A PARB, chromosome partit 25.6 1.2E+02 0.0041 24.2 5.5 38 125-162 130-170 (230)
348 2pn6_A ST1022, 150AA long hypo 25.3 68 0.0023 22.9 3.7 32 120-151 7-39 (150)
349 3cjn_A Transcriptional regulat 25.2 70 0.0024 22.6 3.7 32 120-151 56-88 (162)
350 3k2z_A LEXA repressor; winged 25.1 1.1E+02 0.0037 23.2 4.9 35 117-151 10-46 (196)
351 1kbh_B CREB-binding protein, n 25.0 53 0.0018 21.9 2.6 25 143-167 26-50 (59)
352 1p4w_A RCSB; solution structur 24.9 1E+02 0.0034 21.4 4.4 38 113-151 34-71 (99)
353 4b8x_A SCO5413, possible MARR- 24.9 57 0.0019 23.4 3.1 32 121-152 40-74 (147)
354 1z91_A Organic hydroperoxide r 24.9 80 0.0027 21.7 3.9 32 120-151 44-76 (147)
355 2of7_A Putative TETR-family tr 24.3 89 0.003 23.8 4.3 45 115-159 51-98 (260)
356 1wmg_A Netrin receptor UNC5H2; 24.3 99 0.0034 21.7 4.3 51 110-162 8-63 (103)
357 2p5v_A Transcriptional regulat 24.2 1E+02 0.0035 22.4 4.5 33 119-151 13-46 (162)
358 2lfw_A PHYR sigma-like domain; 24.2 38 0.0013 24.5 2.1 38 113-150 93-130 (157)
359 2k02_A Ferrous iron transport 24.0 79 0.0027 22.0 3.6 33 118-150 4-37 (87)
360 4ac0_A Tetracycline repressor 24.0 51 0.0017 25.0 2.8 48 115-162 6-56 (202)
361 2f2e_A PA1607; transcription f 24.0 87 0.003 22.8 4.1 31 121-151 29-59 (146)
362 2nyx_A Probable transcriptiona 23.6 89 0.0031 22.5 4.1 32 120-151 49-81 (168)
363 2dk5_A DNA-directed RNA polyme 23.5 79 0.0027 21.8 3.5 38 115-152 19-59 (91)
364 1i1g_A Transcriptional regulat 23.0 1.1E+02 0.0038 21.3 4.4 32 120-151 8-40 (141)
365 2np3_A Putative TETR-family re 22.9 25 0.00086 25.6 0.9 48 115-162 33-83 (212)
366 3nxc_A HTH-type protein SLMA; 22.6 65 0.0022 22.9 3.1 47 115-161 27-77 (212)
367 2ia0_A Putative HTH-type trans 22.4 1.1E+02 0.0037 22.9 4.4 33 119-151 20-53 (171)
368 3o9x_A Uncharacterized HTH-typ 22.4 1.1E+02 0.0037 21.4 4.2 32 121-152 76-107 (133)
369 1tw3_A COMT, carminomycin 4-O- 22.2 78 0.0027 25.6 3.8 31 121-151 44-74 (360)
370 4aik_A Transcriptional regulat 22.1 1.4E+02 0.0047 21.4 4.8 32 121-152 36-69 (151)
371 4ev0_A Transcription regulator 21.8 60 0.002 23.7 2.8 23 130-152 164-186 (216)
372 2oz6_A Virulence factor regula 21.6 61 0.0021 23.5 2.8 23 130-152 165-187 (207)
373 1mkm_A ICLR transcriptional re 21.3 97 0.0033 24.3 4.1 31 121-151 13-45 (249)
374 2dbb_A Putative HTH-type trans 21.2 1.3E+02 0.0045 21.4 4.5 33 119-151 12-45 (151)
375 2v57_A TETR family transcripti 21.2 1.1E+02 0.0036 21.5 4.0 47 116-162 18-65 (190)
376 3lfp_A CSP231I C protein; tran 21.1 1.8E+02 0.0062 19.0 5.5 32 121-152 6-41 (98)
377 3ryp_A Catabolite gene activat 21.0 63 0.0022 23.4 2.8 23 130-152 168-190 (210)
378 2e1c_A Putative HTH-type trans 20.9 1.3E+02 0.0043 22.6 4.5 34 118-151 29-63 (171)
379 2vpr_A Tetracycline resistance 20.9 68 0.0023 24.2 3.0 48 115-162 7-57 (207)
380 1d5y_A ROB transcription facto 20.9 1.2E+02 0.0042 23.5 4.6 38 116-153 55-93 (292)
381 1xmk_A Double-stranded RNA-spe 20.7 1.1E+02 0.0038 20.8 3.8 34 117-150 12-47 (79)
382 3iwz_A CAP-like, catabolite ac 20.7 64 0.0022 23.8 2.8 23 130-152 188-210 (230)
383 1qzz_A RDMB, aclacinomycin-10- 20.5 95 0.0033 25.2 4.0 31 121-151 41-71 (374)
384 1uly_A Hypothetical protein PH 20.5 81 0.0028 24.3 3.4 32 120-151 24-55 (192)
385 1i3j_A I-TEVI, intron-associat 20.5 79 0.0027 23.3 3.1 25 129-153 83-107 (116)
386 3o60_A LIN0861 protein; PSI, M 20.3 1.4E+02 0.0049 21.7 4.6 45 116-160 23-71 (185)
387 3dv8_A Transcriptional regulat 20.2 67 0.0023 23.5 2.8 24 129-152 169-192 (220)
No 1
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=99.97 E-value=1.7e-31 Score=236.80 Aligned_cols=94 Identities=28% Similarity=0.350 Sum_probs=71.0
Q ss_pred cccChhhhhcceeEEEEeecCCCCCcCCccCceEEEEeeCCceEEEEcccCCHHHHHHHHHHHH-hCCChhhhhh-----
Q 043121 17 LELTDDELLRECEMDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNLD-AYSPPPQLLQ----- 90 (169)
Q Consensus 17 ~~i~~~~l~~dl~i~~~RssGpGGQ~vNk~~saVrl~H~ptGi~v~~~~~RSq~~Nr~~Al~~L-~~L~~~el~~----- 90 (169)
+.|+++ ||+|+|+|||||||||||||+|+|||+|+||||+|+|+++|||++||+.||++| ++|++.+.++
T Consensus 228 i~I~~~----dl~i~~~RssGpGGQ~VNkt~SaVrlthlPtGivV~~q~eRSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~ 303 (371)
T 1zbt_A 228 YEIDPK----DLRVDIYHASGAGGQNVNKVATAVRIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQ 303 (371)
T ss_dssp SCCCGG----GEEEEEECC---------CCCCEEEEEETTTTEEEEECSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCcC----cEEEEEecCCCCCCCcccccceeEEEEECCCeEEEEECCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555 669999999999999999999999999999999999999999999999999999 6787776544
Q ss_pred cCCCCCcccCCCCCCCCCCCCCCc
Q 043121 91 ILPPKSTITSSEVGPQIGPNNPKF 114 (169)
Q Consensus 91 ~~~~ksqir~~~rg~qIRtYn~~f 114 (169)
...++++++.++||++||||||.-
T Consensus 304 ~~~r~~~ig~g~Rse~IRtYnf~q 327 (371)
T 1zbt_A 304 DAERKSTVGTGDRSERIRTYNFPQ 327 (371)
T ss_dssp CC----CCSCSCTTSEEEEEETTT
T ss_pred HHHHHhhccccccCCCeeeEECCC
Confidence 356688899999999999999844
No 2
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=99.96 E-value=2.6e-31 Score=233.61 Aligned_cols=94 Identities=32% Similarity=0.420 Sum_probs=70.4
Q ss_pred cccChhhhhcceeEEEEeecCCCCCcCCccCceEEEEeeCCceEEEEcccCCHHHHHHHHHHHH-hCCChhhhhh-----
Q 043121 17 LELTDDELLRECEMDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNLD-AYSPPPQLLQ----- 90 (169)
Q Consensus 17 ~~i~~~~l~~dl~i~~~RssGpGGQ~vNk~~saVrl~H~ptGi~v~~~~~RSq~~Nr~~Al~~L-~~L~~~el~~----- 90 (169)
+.|+++ ||+|+|+|||||||||||||+|+|+|+|+||||+|+|+++|||++||+.||++| ++|++.+.++
T Consensus 191 i~i~~~----dl~i~~~RssGpGGQ~VNKt~SaVrl~hlPtGivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~ 266 (342)
T 1rq0_A 191 IEIRPE----DLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQYQNKQTALRILRARLYQLQKEQKEREI 266 (342)
T ss_dssp SCCCGG----GEEEEEECCCC----CCSSSSEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccChh----HeEEEeecCCCCCCcccccccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445554 669999999999999999999999999999999999999999999999999999 6787776654
Q ss_pred cCCCCCcccCCCCCCCCCCCCCCc
Q 043121 91 ILPPKSTITSSEVGPQIGPNNPKF 114 (169)
Q Consensus 91 ~~~~ksqir~~~rg~qIRtYn~~f 114 (169)
...++++++.++||++||||||.-
T Consensus 267 ~~~r~~~i~~g~Rse~IRtYnf~~ 290 (342)
T 1rq0_A 267 SQKRKSQIGTGERSEKIRTYNFPQ 290 (342)
T ss_dssp CC----------CCCEEEEEETTT
T ss_pred HHHHHhhcccccccCCeEEEECCC
Confidence 255677888889999999999843
No 3
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=99.96 E-value=2.9e-31 Score=234.58 Aligned_cols=94 Identities=27% Similarity=0.446 Sum_probs=75.0
Q ss_pred cccChhhhhcceeEEEEeecCCCCCcCCccCceEEEEeeCCceEEEEcccCCHHHHHHHHHHHH-hCCChhhhhhc----
Q 043121 17 LELTDDELLRECEMDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNLD-AYSPPPQLLQI---- 91 (169)
Q Consensus 17 ~~i~~~~l~~dl~i~~~RssGpGGQ~vNk~~saVrl~H~ptGi~v~~~~~RSq~~Nr~~Al~~L-~~L~~~el~~~---- 91 (169)
+.|+++ ||+|+|+|||||||||||||+|+|+|+|+||||+|+|+++|||++||+.||++| ++|++.+.+++
T Consensus 215 i~i~~~----dl~i~~~RssG~GGQ~VNkt~saVrl~hlPtGivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~ 290 (360)
T 2b3t_B 215 PDVNPA----DLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAE 290 (360)
T ss_dssp CCCCSS----SEEEEECCSSCCCTTTCCCSSEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHTTTTTTSCC---
T ss_pred cccChh----heEEeeecCCCCCCCccccccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445544 679999999999999999999999999999999999999999999999999999 67777766543
Q ss_pred -CCCCCcccCCCCCCCCCCCCCCc
Q 043121 92 -LPPKSTITSSEVGPQIGPNNPKF 114 (169)
Q Consensus 92 -~~~ksqir~~~rg~qIRtYn~~f 114 (169)
..++++++.++||++||||||.-
T Consensus 291 ~~~r~~~i~~g~rse~IRtYnf~~ 314 (360)
T 2b3t_B 291 ASTRRNLLGSGDRSDRNRTYNFPQ 314 (360)
T ss_dssp ---CCC-------CCEEEEEETTT
T ss_pred HHHHHHhcccccccCCeeeEECCC
Confidence 45677888889999999999844
No 4
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=99.96 E-value=1.2e-31 Score=236.58 Aligned_cols=94 Identities=29% Similarity=0.359 Sum_probs=82.6
Q ss_pred cccChhhhhcceeEEEEeecCCCCCcCCccCceEEEEeeCCceEEEEcccCCHHHHHHHHHHHH-hCCChhhhhhc----
Q 043121 17 LELTDDELLRECEMDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNLD-AYSPPPQLLQI---- 91 (169)
Q Consensus 17 ~~i~~~~l~~dl~i~~~RssGpGGQ~vNk~~saVrl~H~ptGi~v~~~~~RSq~~Nr~~Al~~L-~~L~~~el~~~---- 91 (169)
+.|+++ ||+|+|+|||||||||||||+|+|||+|+||||+|+|+++|||++||+.||++| ++|++.+.+++
T Consensus 210 i~i~~~----dl~i~~~RssG~GGQ~VNkt~SaVrl~HlPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~ 285 (354)
T 3d5a_X 210 FALNMD----EIRIDVMRASGPGGQGVNTTDSAVRVVHLPTGIMVTCQDSRSQIKNREKALMILRSRLLEMKRAEEAERL 285 (354)
T ss_dssp CCCCGG----GEEEEEECCCSCCHHHHHHCCCEEEEEETTTTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcc----ceEEEeecCCCCCCcccccccceEEEEEcCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456655 669999999999999999999999999999999999999999999999999999 67877766542
Q ss_pred -CCCCCcccCCCCCCCCCCCCCCc
Q 043121 92 -LPPKSTITSSEVGPQIGPNNPKF 114 (169)
Q Consensus 92 -~~~ksqir~~~rg~qIRtYn~~f 114 (169)
..++++++.++||++||||||.-
T Consensus 286 ~~~r~~~i~~g~rse~IRtYnf~q 309 (354)
T 3d5a_X 286 RKTRLAQIGTGERSEKIRTYNFPQ 309 (354)
T ss_dssp HHHHHHHSCGGGGSCSSEEEETTT
T ss_pred HHHHHhhcccccccCCeeeEECCC
Confidence 44577898899999999999854
No 5
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=99.96 E-value=7.5e-31 Score=232.34 Aligned_cols=93 Identities=32% Similarity=0.496 Sum_probs=77.3
Q ss_pred cccChhhhhcceeEEEEeecCCCCCcCCccCceEEEEeeCCceEEEEcccCCHHHHHHHHHHHH-hCCChhhhhhcCCCC
Q 043121 17 LELTDDELLRECEMDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNLD-AYSPPPQLLQILPPK 95 (169)
Q Consensus 17 ~~i~~~~l~~dl~i~~~RssGpGGQ~vNk~~saVrl~H~ptGi~v~~~~~RSq~~Nr~~Al~~L-~~L~~~el~~~~~~k 95 (169)
+.|+++ ||+|+|+|||||||||||||+|+|||+|+||||+|+|+++|||++||+.||++| ++|++.+.+++....
T Consensus 232 i~i~~~----dl~~~~~RssG~GGQ~VNkt~saVrl~HiPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~ 307 (365)
T 1gqe_A 232 IEINPA----DLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEK 307 (365)
T ss_dssp CCCCGG----GEEEEEECCCCSSCCSTTSSCCEEEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCHH----HceEeeecCCCCCCCcccCccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456555 669999999999999999999999999999999999999999999999999999 688887766542222
Q ss_pred Cccc----CCCCCCCCCCCCCC
Q 043121 96 STIT----SSEVGPQIGPNNPK 113 (169)
Q Consensus 96 sqir----~~~rg~qIRtYn~~ 113 (169)
+..+ ...||+|||||||.
T Consensus 308 ~~~r~~~~~i~~G~~IRtY~f~ 329 (365)
T 1gqe_A 308 QAMEDNKSDIGWGSQIRSYVLD 329 (365)
T ss_dssp TCCSTTCCCCCSCSEEEEEEGG
T ss_pred HHHhhhhcccCccCCeEeEECC
Confidence 2222 23699999999873
No 6
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=99.96 E-value=1.1e-30 Score=231.27 Aligned_cols=94 Identities=29% Similarity=0.327 Sum_probs=78.4
Q ss_pred cccChhhhhcceeEEEEeecCCCCCcCCccCceEEEEeeCCceEEEEcccCCHHHHHHHHHHHH-hCCChhhhhhcCCCC
Q 043121 17 LELTDDELLRECEMDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNLD-AYSPPPQLLQILPPK 95 (169)
Q Consensus 17 ~~i~~~~l~~dl~i~~~RssGpGGQ~vNk~~saVrl~H~ptGi~v~~~~~RSq~~Nr~~Al~~L-~~L~~~el~~~~~~k 95 (169)
+.|++. ||+|+|+|||||||||||||+|+|||+|+||||+|+|+++|||++||+.||++| ++|++.+.+++....
T Consensus 220 i~i~~~----dl~i~~~RssG~GGQ~VNkt~saVrl~h~Ptgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~ 295 (365)
T 2ihr_1 220 VVLKPE----ELRIDVMRASGPGGQGVNTTDSAVRVVHLPTGITVTCQTTRSQIKNKELALKILKARLYELERKKREEEL 295 (365)
T ss_dssp CCCCGG----GEEEEEECCCCSSCCSGGGSCSEEEEEETTTTEEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCcc----ceEEEEeecCCCCCceecccceEEEEEEcCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456655 669999999999999999999999999999999999999999999999999999 688887776543232
Q ss_pred Cccc----CCCCCCCCCCCCCCc
Q 043121 96 STIT----SSEVGPQIGPNNPKF 114 (169)
Q Consensus 96 sqir----~~~rg~qIRtYn~~f 114 (169)
+..+ ...||++||||||.-
T Consensus 296 ~~~r~~~~~i~~G~~IRtYnf~~ 318 (365)
T 2ihr_1 296 KALRGEVRPIEWGSQIRSYVLDK 318 (365)
T ss_dssp TTTTCCSCCSCCCSCSEEEEGGG
T ss_pred HHHHhhhhccCccCCeeeEECCC
Confidence 3222 336899999998843
No 7
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus}
Probab=99.95 E-value=3.5e-29 Score=191.05 Aligned_cols=71 Identities=30% Similarity=0.361 Sum_probs=63.9
Q ss_pred CCCcccChhhhhcceeEEEEeecCCCCCcCCccCceEEEEeeCCceEEEEcccCCHHHHHHHHHHHH-hCCChhhh
Q 043121 14 KNYLELTDDELLRECEMDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNLD-AYSPPPQL 88 (169)
Q Consensus 14 ~~~~~i~~~~l~~dl~i~~~RssGpGGQ~vNk~~saVrl~H~ptGi~v~~~~~RSq~~Nr~~Al~~L-~~L~~~el 88 (169)
...+.|+++| |+|+|+|||||||||||||+|+|+|+|+||||+|+|+++|||++||+.||++| ++|++.+.
T Consensus 38 ~~~l~I~~~d----l~~~~~RssGpGGQ~VNKt~SaVrl~H~PTGivV~~q~~RSQ~~Nr~~A~~~L~~kL~e~~~ 109 (115)
T 2rsm_A 38 PALLPLNESE----LEEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQTRSVDQNRKIARKVLQEKVDVFYN 109 (115)
T ss_dssp CCSCCCCGGG----CEEEECSCCCSCSSSCCCSCCCEEEECTTTCCEEEECCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCcCHHH----eEEEEeeCCCCCccccCccceeEEEecCCCCcEEEEcCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 4457788775 59999999999999999999999999999999999999999999999999999 67766653
No 8
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=99.92 E-value=7.2e-26 Score=171.98 Aligned_cols=61 Identities=23% Similarity=0.335 Sum_probs=56.4
Q ss_pred cccChhhhhcceeEEEEeecCCCCCcCCccCceEEEE-eeCCc------------------------eEEEEcccCCHHH
Q 043121 17 LELTDDELLRECEMDTYKLSGPGSQHRNKRESAVRLK-HVPTG------------------------VIAHAAEDRSQHK 71 (169)
Q Consensus 17 ~~i~~~~l~~dl~i~~~RssGpGGQ~vNk~~saVrl~-H~ptG------------------------i~v~~~~~RSq~~ 71 (169)
+.|+++ ||+|+|+|||||||||||||+|+|+|+ |+|+| |+|+|+++|||++
T Consensus 15 i~I~~~----dl~~~~~RssGpGGQnVNKv~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~ 90 (112)
T 1j26_A 15 SYIPLD----RLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFR 90 (112)
T ss_dssp CCCCTT----TSEEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHHH
T ss_pred EecChH----HeEEEEEECCCCCCCCccCCcceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEEECCccCHHH
Confidence 446655 569999999999999999999999998 99997 9999999999999
Q ss_pred HHHHHHHHHh
Q 043121 72 NHASSVNLDA 81 (169)
Q Consensus 72 Nr~~Al~~L~ 81 (169)
||+.||++|.
T Consensus 91 Nr~~Al~rL~ 100 (112)
T 1j26_A 91 NLAECLQKIR 100 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999995
No 9
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=99.92 E-value=7.3e-26 Score=170.97 Aligned_cols=63 Identities=30% Similarity=0.462 Sum_probs=58.2
Q ss_pred CcccChhhhhcceeEEEEeecCCCCCcCCccCceEEEEe------eC-----------------Cc-eEEEEcccCCHHH
Q 043121 16 YLELTDDELLRECEMDTYKLSGPGSQHRNKRESAVRLKH------VP-----------------TG-VIAHAAEDRSQHK 71 (169)
Q Consensus 16 ~~~i~~~~l~~dl~i~~~RssGpGGQ~vNk~~saVrl~H------~p-----------------tG-i~v~~~~~RSq~~ 71 (169)
.+.|+++ ||+|+|+|||||||||||||+|+|+|+| +| +| |+|+|+++|||++
T Consensus 7 ~i~I~~~----dl~~~~~RssGpGGQnVNKv~SaV~L~~d~~~s~lP~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~ 82 (108)
T 2jva_A 7 NVHLPDA----EIELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLKAQQYRTQEQ 82 (108)
T ss_dssp SCEECGG----GEEEEECCCTTCSSSSSCCCCCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCTTCEEEEEECCSSSHHH
T ss_pred ccccChH----HEEEEEEECCCCCCCCcCCCcceEEEEEEcccccCCHHHHHHHHHHhccccccCCcEEEEECCcCCHHH
Confidence 4777776 4599999999999999999999999999 88 98 9999999999999
Q ss_pred HHHHHHHHHhC
Q 043121 72 NHASSVNLDAY 82 (169)
Q Consensus 72 Nr~~Al~~L~~ 82 (169)
||+.|+++|..
T Consensus 83 Nr~~Al~rL~~ 93 (108)
T 2jva_A 83 NRADALLRLSE 93 (108)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999953
No 10
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=99.89 E-value=4.5e-24 Score=167.50 Aligned_cols=64 Identities=30% Similarity=0.479 Sum_probs=58.1
Q ss_pred CCcccChhhhhcceeEEEEeecCCCCCcCCccCceEEEE------eeCC-----------------c-eEEEEcccCCHH
Q 043121 15 NYLELTDDELLRECEMDTYKLSGPGSQHRNKRESAVRLK------HVPT-----------------G-VIAHAAEDRSQH 70 (169)
Q Consensus 15 ~~~~i~~~~l~~dl~i~~~RssGpGGQ~vNk~~saVrl~------H~pt-----------------G-i~v~~~~~RSq~ 70 (169)
+.+.|+++ ||+|+|+|||||||||||||+|+|+|+ |+|+ | |+|+|+++|||+
T Consensus 6 ~~i~I~~~----el~~~~~RssGpGGQnVNKv~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ~ 81 (140)
T 4dh9_Y 6 RHVAIPDG----ELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQE 81 (140)
T ss_dssp SSSCCCTT----CSEEEEECCCSSSSHHHHTTCCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSHH
T ss_pred CCCccChH----HeEEEEEECCCCCCCccccccceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcCCcCHH
Confidence 35778876 459999999999999999999999999 7997 5 999999999999
Q ss_pred HHHHHHHHHHhC
Q 043121 71 KNHASSVNLDAY 82 (169)
Q Consensus 71 ~Nr~~Al~~L~~ 82 (169)
+|++.|+++|..
T Consensus 82 ~Nr~~A~~rL~~ 93 (140)
T 4dh9_Y 82 LNREAALARLVA 93 (140)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999953
No 11
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=93.50 E-value=0.11 Score=33.88 Aligned_cols=35 Identities=14% Similarity=0.036 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 119 QALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 119 ~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
..+...|..++|+++.||+.||+|.+.|.+.+++.
T Consensus 22 ~~i~~aL~~~~gn~~~aA~~LGisr~tL~rklkk~ 56 (63)
T 3e7l_A 22 IFIEEKLREYDYDLKRTAEEIGIDLSNLYRKIKSL 56 (63)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 45677888999999999999999999999988764
No 12
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=92.30 E-value=0.2 Score=35.14 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 119 QALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 119 ~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
..+...|..++|+++.||+.||+|++.|.+.|++.
T Consensus 44 ~~I~~aL~~~~GN~s~AA~~LGISR~TLyrKLkk~ 78 (81)
T 1umq_A 44 EHIQRIYEMCDRNVSETARRLNMHRRTLQRILAKR 78 (81)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHHh
Confidence 34667888999999999999999999999988764
No 13
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=91.35 E-value=0.3 Score=31.80 Aligned_cols=34 Identities=21% Similarity=0.060 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 119 QALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 119 ~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
..+.+.|..+ |+++.||+.||+|++.|-+-+++.
T Consensus 24 ~~I~~aL~~~-gn~~~aA~~LGIsr~tL~rklkk~ 57 (61)
T 1g2h_A 24 QVLKLFYAEY-PSTRKLAQRLGVSHTAIANKLKQY 57 (61)
T ss_dssp HHHHHHHHHS-CSHHHHHHHTTSCTHHHHHHHHTT
T ss_pred HHHHHHHHHh-CCHHHHHHHhCCCHHHHHHHHHHh
Confidence 3456667778 999999999999999999988764
No 14
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=90.69 E-value=0.26 Score=34.36 Aligned_cols=35 Identities=23% Similarity=0.210 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 119 QALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 119 ~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
..+...|..++|+++.||+.||+|.+.|.+.|++.
T Consensus 54 ~~i~~aL~~~~gn~~~aA~~LGIsr~tL~rklkk~ 88 (91)
T 1ntc_A 54 TLLTTALRHTQGHKQEAARLLGWGAATLTAKLKEL 88 (91)
T ss_dssp HHHHHHHHHTTTCTTHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 34567788899999999999999999999888753
No 15
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=90.34 E-value=0.37 Score=33.60 Aligned_cols=51 Identities=16% Similarity=0.135 Sum_probs=39.6
Q ss_pred HHHHHHHHHHH---hcCCHHHHHHHhcCChhHHHHHHhcC--hhHHHHHHHhhhhc
Q 043121 117 GMQALLDLIFA---VEGSVSEAAKLLWLSTGALSRLILSD--DSHQIAVNELRTSK 167 (169)
Q Consensus 117 ~l~~~lD~l~~---~~~~~~~aa~~l~~st~~L~k~l~~~--~~~~~~~n~~R~~~ 167 (169)
.+..+++.|.. ...++.+.|+.+|+|+..|.++++.. -+....+++.|..+
T Consensus 6 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~ 61 (108)
T 3oou_A 6 IIQNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKEMGEHFTDYLNRYRVNY 61 (108)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34455555554 36789999999999999999999987 67777788887654
No 16
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=90.16 E-value=0.4 Score=34.52 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 120 ALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 120 ~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
.+...|..++|+++.||+.||+|++.|-+.|++.
T Consensus 62 ~I~~aL~~~~gn~~~AA~~LGIsR~TL~rkLkk~ 95 (98)
T 1eto_A 62 LLDMVMQYTLGNQTRAALMMGINRGTLRKKLKKY 95 (98)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHHh
Confidence 3556788899999999999999999999988765
No 17
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=88.37 E-value=0.95 Score=31.36 Aligned_cols=50 Identities=12% Similarity=0.083 Sum_probs=38.4
Q ss_pred HHHHHHHHHH---hcCCHHHHHHHhcCChhHHHHHHhc--ChhHHHHHHHhhhhc
Q 043121 118 MQALLDLIFA---VEGSVSEAAKLLWLSTGALSRLILS--DDSHQIAVNELRTSK 167 (169)
Q Consensus 118 l~~~lD~l~~---~~~~~~~aa~~l~~st~~L~k~l~~--~~~~~~~~n~~R~~~ 167 (169)
+..+++.|.. ...++.+.|+.+|+|+..|.++++. .-+....+++.|..+
T Consensus 4 i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~~~G~s~~~~~~~~Rl~~ 58 (108)
T 3mn2_A 4 VRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRSRGYSPMAFAKRVRLQH 58 (108)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 4455555554 3568999999999999999999998 466777788877654
No 18
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=87.87 E-value=0.87 Score=31.91 Aligned_cols=53 Identities=21% Similarity=0.112 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHh---cCCHHHHHHHhcCChhHHHHHHhcC--hhHHHHHHHhhhhc
Q 043121 115 SLGMQALLDLIFAV---EGSVSEAAKLLWLSTGALSRLILSD--DSHQIAVNELRTSK 167 (169)
Q Consensus 115 ~~~l~~~lD~l~~~---~~~~~~aa~~l~~st~~L~k~l~~~--~~~~~~~n~~R~~~ 167 (169)
...+..+++.|... ..++.+.|+.+|+|+..|.++++.. -+....+++.|..+
T Consensus 6 ~~~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~ 63 (113)
T 3oio_A 6 QPKLTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGTVPSKYYLELRLNR 63 (113)
T ss_dssp CHHHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34567777777764 4679999999999999999999984 66677788877654
No 19
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=87.15 E-value=1.2 Score=30.79 Aligned_cols=51 Identities=20% Similarity=0.113 Sum_probs=40.0
Q ss_pred HHHHHHHHHHH----hcCCHHHHHHHhcCChhHHHHHHhc--ChhHHHHHHHhhhhc
Q 043121 117 GMQALLDLIFA----VEGSVSEAAKLLWLSTGALSRLILS--DDSHQIAVNELRTSK 167 (169)
Q Consensus 117 ~l~~~lD~l~~----~~~~~~~aa~~l~~st~~L~k~l~~--~~~~~~~~n~~R~~~ 167 (169)
.+..+++.|.. ...++++.|+.+|+|+..|.++++. .-+....+++.|..+
T Consensus 4 ~i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~ 60 (107)
T 2k9s_A 4 RVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQ 60 (107)
T ss_dssp HHHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45566676654 3567999999999999999999998 467777788887654
No 20
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=85.54 E-value=1.7 Score=29.78 Aligned_cols=39 Identities=26% Similarity=0.147 Sum_probs=32.8
Q ss_pred cCCHHHHHHHhcCChhHHHHHHhcC--hhHHHHHHHhhhhc
Q 043121 129 EGSVSEAAKLLWLSTGALSRLILSD--DSHQIAVNELRTSK 167 (169)
Q Consensus 129 ~~~~~~aa~~l~~st~~L~k~l~~~--~~~~~~~n~~R~~~ 167 (169)
..++++.|+.+|+|+..|.++++.. -+....+++.|..+
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~~g~s~~~~~~~~Rl~~ 59 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKNFGIPFQDYLLQKRMEK 59 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 6789999999999999999999985 56677777777654
No 21
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=84.59 E-value=1.5 Score=31.52 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHh---cCCHHHHHHHhcCChhHHHHHHhcC--hhHHHHHHHhhhhc
Q 043121 115 SLGMQALLDLIFAV---EGSVSEAAKLLWLSTGALSRLILSD--DSHQIAVNELRTSK 167 (169)
Q Consensus 115 ~~~l~~~lD~l~~~---~~~~~~aa~~l~~st~~L~k~l~~~--~~~~~~~n~~R~~~ 167 (169)
...+..+++.|... ..++++.|+.+|+|+..|.++++.. -+....+++.|..+
T Consensus 10 ~~~i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~~G~s~~~~l~~~Rl~~ 67 (129)
T 1bl0_A 10 AITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTE 67 (129)
T ss_dssp HHHHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34566677777654 5789999999999999999999984 66777888887654
No 22
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=82.02 E-value=1.9 Score=27.07 Aligned_cols=31 Identities=19% Similarity=0.186 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCHHHHHHHhcCChhHHHHHHhc
Q 043121 121 LLDLIFAVEGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 121 ~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
+.+.+...+ +.+.+|+.||+|.+.+++.++.
T Consensus 6 l~~~~~~~g-s~~~~A~~lgis~~~vs~~~~~ 36 (67)
T 2pij_A 6 LSKYLEEHG-TQSALAAALGVNQSAISQMVRA 36 (67)
T ss_dssp HHHHHHHTC-CHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHcC-CHHHHHHHHCcCHHHHHHHHcC
Confidence 345566666 9999999999999999999854
No 23
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=81.59 E-value=2.4 Score=29.93 Aligned_cols=53 Identities=17% Similarity=0.126 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHh---cCCHHHHHHHhcCChhHHHHHHhcC-hhHHHHHHHhhhhc
Q 043121 115 SLGMQALLDLIFAV---EGSVSEAAKLLWLSTGALSRLILSD-DSHQIAVNELRTSK 167 (169)
Q Consensus 115 ~~~l~~~lD~l~~~---~~~~~~aa~~l~~st~~L~k~l~~~-~~~~~~~n~~R~~~ 167 (169)
+..+..+++.|... ..++.+.|+.+|+|+..|.++++.. -+....++..|..+
T Consensus 6 ~~~~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~G~s~~~~~~~~Rl~~ 62 (120)
T 3mkl_A 6 PNMRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLREEETSYSQLLTECRMQR 62 (120)
T ss_dssp CCHHHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34566677776654 5679999999999999999999875 24556677777554
No 24
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=76.30 E-value=7.8 Score=24.22 Aligned_cols=38 Identities=8% Similarity=0.150 Sum_probs=30.6
Q ss_pred HHHHHHhcCC----HHHHHHHhcCChhHHHHHHhcChhHHHHH
Q 043121 122 LDLIFAVEGS----VSEAAKLLWLSTGALSRLILSDDSHQIAV 160 (169)
Q Consensus 122 lD~l~~~~~~----~~~aa~~l~~st~~L~k~l~~~~~~~~~~ 160 (169)
++.+ ..+.+ +.++|..||++++.|-+-++....+...|
T Consensus 15 ~~~~-~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~~~~~~~~~ 56 (59)
T 2glo_A 15 LESY-RNDNDCKGNQRATARKYNIHRRQIQKWLQCESNLRSSV 56 (59)
T ss_dssp HHHH-HHCTTTTTCHHHHHHHTTSCHHHHHHHHTTHHHHHHHH
T ss_pred HHHH-HcCCCcchHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 4444 34567 99999999999999999998887777665
No 25
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=75.09 E-value=2.1 Score=30.87 Aligned_cols=51 Identities=14% Similarity=0.037 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHH-HhcCCHHHHHHHhcCChhHHHHHHhcCh--hHHHHHHHhhh
Q 043121 115 SLGMQALLDLIF-AVEGSVSEAAKLLWLSTGALSRLILSDD--SHQIAVNELRT 165 (169)
Q Consensus 115 ~~~l~~~lD~l~-~~~~~~~~aa~~l~~st~~L~k~l~~~~--~~~~~~n~~R~ 165 (169)
...+..+++.|. ..+.++++.|..+|+|++.|.+++++.- +-...++++|.
T Consensus 78 ~~~l~~a~~~i~~~~~~sl~~lA~~~g~S~~~f~r~Fk~~~G~tp~~y~~~~Rl 131 (133)
T 1u8b_A 78 LDKITHACRLLEQETPVTLEALADQVAMSPFHLHRLFKATTGMTPKAWQQAWRA 131 (133)
T ss_dssp HHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHh
Confidence 346777888887 6677899999999999999999998752 33444555554
No 26
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=74.87 E-value=2.8 Score=34.51 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 119 QALLDLIFAVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 119 ~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
..+...|..++|+.+.||+.||+|++.|-+-|+
T Consensus 271 ~~i~~~l~~~~gn~~~aA~~Lgi~r~tl~~kl~ 303 (304)
T 1ojl_A 271 EVILAALEKTGGNKTEAARQLGITRKTLLAKLS 303 (304)
T ss_dssp HHHHHHHHTTTTCHHHHHHHHTSCHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 345678888999999999999999999998775
No 27
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=74.09 E-value=3.5 Score=27.94 Aligned_cols=38 Identities=13% Similarity=0.073 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcChhHH
Q 043121 119 QALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSDDSHQ 157 (169)
Q Consensus 119 ~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~~~~~ 157 (169)
..++..+ ..+.++.++|+.||+|++.|-+.++......
T Consensus 29 ~~~v~~~-~~g~s~~~iA~~~gIs~sTl~rW~k~~~~~~ 66 (87)
T 2elh_A 29 IHAIQRI-HDGESKASVARDIGVPESTLRGWCKNEDKLR 66 (87)
T ss_dssp HHHHHHH-HHTCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HCCCCHHHHHHHHCcCHHHHHHHHHHHHhcc
Confidence 3555655 4578899999999999999999887654433
No 28
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=73.58 E-value=9.8 Score=21.35 Aligned_cols=33 Identities=12% Similarity=0.040 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 120 ALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 120 ~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
.++..+ ..+.+..++|+.||+|.+.+-+.+...
T Consensus 13 ~i~~~~-~~g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 13 QLDVMK-LLNVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp HHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred HHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 444443 567899999999999999999888654
No 29
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=71.03 E-value=7.2 Score=28.09 Aligned_cols=53 Identities=8% Similarity=-0.072 Sum_probs=44.0
Q ss_pred CCCchhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHHh
Q 043121 111 NPKFSLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNEL 163 (169)
Q Consensus 111 n~~f~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~~ 163 (169)
+.+.+..+...++++...|++ +.+.|+..|+|.+.|-+-+.+-..++.+|=+.
T Consensus 6 ~~~~~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~av~~~ 61 (192)
T 2zcm_A 6 HHMKDKIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEIYRKSVEN 61 (192)
T ss_dssp --CHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHHTCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHHHH
Confidence 334567899999999999875 89999999999999999999888888776543
No 30
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=69.83 E-value=10 Score=22.81 Aligned_cols=34 Identities=18% Similarity=0.120 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 117 GMQALLDLIFAVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 117 ~l~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
-...++.+ ...+.+.+++|+.||+|.+.+.+.+.
T Consensus 20 ~~~~i~~l-~~~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 20 LVSVAHEL-AKMGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHH-HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34455554 56788999999999999999988775
No 31
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=69.19 E-value=5 Score=26.18 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=26.3
Q ss_pred HHHHHHHHHhc--CCHHHHHHHhcCChhHHHHHHh
Q 043121 119 QALLDLIFAVE--GSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 119 ~~~lD~l~~~~--~~~~~aa~~l~~st~~L~k~l~ 151 (169)
..+|+.|...+ .+.++.|+.||+|.+.+.+.|.
T Consensus 13 ~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~ 47 (67)
T 2heo_A 13 QKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLY 47 (67)
T ss_dssp HHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 45888887643 4689999999999988887764
No 32
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=68.99 E-value=7.1 Score=22.49 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcCh
Q 043121 119 QALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSDD 154 (169)
Q Consensus 119 ~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~~ 154 (169)
..++.++ ..+.++.++|+.||+|.+-+.+.+....
T Consensus 12 ~~i~~l~-~~g~s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 12 EQISRLL-EKGHPRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp HHHHHHH-HTTCCHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred HHHHHHH-HcCCCHHHHHHHHCCCHHHHHHHHHHcc
Confidence 4455554 4568899999999999999999887654
No 33
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=66.93 E-value=11 Score=23.36 Aligned_cols=38 Identities=16% Similarity=0.104 Sum_probs=31.3
Q ss_pred chhHHHHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 114 FSLGMQALLDLIFAVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 114 f~~~l~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.++--..++-.....+.+.+++|+.||+|.+.+-+.+.
T Consensus 16 L~~~~r~il~l~~~~g~s~~eIA~~lgis~~tv~~~~~ 53 (70)
T 2o8x_A 16 LTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVA 53 (70)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 45666777887778899999999999999998886554
No 34
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=66.34 E-value=17 Score=23.73 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 118 MQALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 118 l~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
-..+...+...+.+.++.|+.+|+|.+.+.++....
T Consensus 20 ~~~l~~~r~~~glsq~elA~~~gis~~~is~~e~g~ 55 (83)
T 2a6c_A 20 LIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGK 55 (83)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCC
Confidence 345667778889999999999999999999999865
No 35
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=66.10 E-value=9.1 Score=26.26 Aligned_cols=38 Identities=5% Similarity=-0.031 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHhcC-ChhHHHHHHhcC
Q 043121 116 LGMQALLDLIFAVEGSVSEAAKLLWL-STGALSRLILSD 153 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~~~~~aa~~l~~-st~~L~k~l~~~ 153 (169)
.-|..+..+|..-+.+++++|..+|+ +.+.+++.+++.
T Consensus 57 ~Rl~~A~~lL~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~ 95 (108)
T 3oou_A 57 YRVNYAKEELLQTKDNLTIIAGKSGYTDMAYFYRQFKKH 95 (108)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHcCCCChHHHHHHHHHH
Confidence 34778888888888999999999998 788888888753
No 36
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=65.05 E-value=11 Score=22.65 Aligned_cols=33 Identities=24% Similarity=0.058 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 121 LLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 121 ~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
+-..+...+.+..+.|+.+|+|++.+.++....
T Consensus 6 l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~ 38 (66)
T 2xi8_A 6 LKLIREKKKISQSELAALLEVSRQTINGIEKNK 38 (66)
T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCC
Confidence 345667788999999999999999999998753
No 37
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=64.38 E-value=10 Score=26.89 Aligned_cols=36 Identities=14% Similarity=0.093 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 118 MQALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 118 l~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
...+++.+...+-.+.+.|+.+|+|.+-+.+.|...
T Consensus 9 ~~~I~~~l~~~~~ti~dlA~~~gVS~~TVsR~L~~~ 44 (93)
T 2l0k_A 9 TIKIGKYIVETKKTVRVIAKEFGVSKSTVHKDLTER 44 (93)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHTSCHHHHHHHHTTH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcCC
Confidence 345778888878899999999999999999999875
No 38
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=64.28 E-value=4.7 Score=31.04 Aligned_cols=26 Identities=35% Similarity=0.440 Sum_probs=22.8
Q ss_pred HhcCCHHHHHHHhcCChhHHHHHHhc
Q 043121 127 AVEGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 127 ~~~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
+-.|+++.||+.|++|.+++++-|++
T Consensus 15 ~~~gs~t~AA~~L~isq~avS~~i~~ 40 (306)
T 3hhg_A 15 VESGSFSRAAEQLAMANSAVSRIVKR 40 (306)
T ss_dssp HHSSSHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHhCCCHHHHHHHHHH
Confidence 34679999999999999999998864
No 39
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=64.02 E-value=11 Score=24.68 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=21.5
Q ss_pred CHHHHHHHhcCChhHHHHHHhcCh
Q 043121 131 SVSEAAKLLWLSTGALSRLILSDD 154 (169)
Q Consensus 131 ~~~~aa~~l~~st~~L~k~l~~~~ 154 (169)
..++.|+.+|+|++.++++|...+
T Consensus 2 T~~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 2 KLDEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTCT
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 467899999999999999999876
No 40
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=63.40 E-value=4.5 Score=31.43 Aligned_cols=25 Identities=28% Similarity=0.198 Sum_probs=22.2
Q ss_pred hcCCHHHHHHHhcCChhHHHHHHhc
Q 043121 128 VEGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 128 ~~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
-.|+++.||+.|++|.+++++-|++
T Consensus 23 ~~gs~s~AA~~L~isq~avS~~I~~ 47 (310)
T 2esn_A 23 RHRNVGTAASELAISASAFSHALGR 47 (310)
T ss_dssp HHSSHHHHHHHHTCCHHHHHHHHHH
T ss_pred HcCCHHHHHHHhCCChHHHHHHHHH
Confidence 4579999999999999999998864
No 41
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=63.19 E-value=9.3 Score=31.97 Aligned_cols=53 Identities=9% Similarity=0.095 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHH---hcCCHHHHHHHhcCChhHHHHHHhcC--hhHHHHHHHhhhhc
Q 043121 115 SLGMQALLDLIFA---VEGSVSEAAKLLWLSTGALSRLILSD--DSHQIAVNELRTSK 167 (169)
Q Consensus 115 ~~~l~~~lD~l~~---~~~~~~~aa~~l~~st~~L~k~l~~~--~~~~~~~n~~R~~~ 167 (169)
.+.++.+++.+.. -..++++.|+.+|+|+..|.|++++. -+....+++.|..+
T Consensus 304 d~~~~~~~~~i~~~~~~~~~~~~~a~~~~~s~~~l~r~f~~~~g~s~~~~~~~~r~~~ 361 (412)
T 4fe7_A 304 DPAVIQAMHYIRNHACKGIKVDQVLDAVGISRSNLEKRFKEEVGETIHAMIHAEKLEK 361 (412)
T ss_dssp CHHHHHHHHHHHHHGGGTCCHHHHHHHTTCCHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhccCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3466777777765 46789999999999999999999987 56667777777554
No 42
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=62.87 E-value=9.7 Score=26.44 Aligned_cols=32 Identities=16% Similarity=0.134 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCHHHHHHHhcCChhHHHHHHhc
Q 043121 121 LLDLIFAVEGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 121 ~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
+|..|.....+++++|+.|++|.+.+++.|+.
T Consensus 37 il~~L~~~~~s~~ela~~l~is~stvsr~l~~ 68 (119)
T 2lkp_A 37 ILTQLRNGPLPVTDLAEAIGMEQSAVSHQLRV 68 (119)
T ss_dssp HHHHHHHCCCCHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 44455555688999999999999999987753
No 43
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=62.74 E-value=14 Score=22.33 Aligned_cols=34 Identities=15% Similarity=0.010 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhc
Q 043121 119 QALLDLIFAVEGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 119 ~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
..+-..+...+.+.++.|+.+|+|++.+.++...
T Consensus 8 ~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g 41 (68)
T 2r1j_L 8 ERIRARRKKLKIRQAALGKMVGVSNVAISQWERS 41 (68)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 3456677788999999999999999999999875
No 44
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=62.33 E-value=16 Score=22.25 Aligned_cols=34 Identities=9% Similarity=-0.007 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 120 ALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 120 ~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
.+-..+...+.+.++.|+.+|+|.+.+.++....
T Consensus 5 ~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~ 38 (69)
T 1r69_A 5 RVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGK 38 (69)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCC
Confidence 3556677889999999999999999999998754
No 45
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=61.69 E-value=15 Score=22.50 Aligned_cols=34 Identities=12% Similarity=-0.013 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 120 ALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 120 ~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
.+-..+...+.+..+.|+.+|+|.+.+.++....
T Consensus 7 ~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~ 40 (71)
T 1zug_A 7 RLKKRRIALKMTQTELATKAGVKQQSIQLIEAGV 40 (71)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCC
Confidence 4556777888999999999999999999998753
No 46
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=60.87 E-value=10 Score=26.65 Aligned_cols=39 Identities=10% Similarity=0.098 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCHH-HHHHHhcCChhHHHHHHhcChhHHH
Q 043121 120 ALLDLIFAVEGSVS-EAAKLLWLSTGALSRLILSDDSHQI 158 (169)
Q Consensus 120 ~~lD~l~~~~~~~~-~aa~~l~~st~~L~k~l~~~~~~~~ 158 (169)
.+++.+...+.... ++|+.||+|.+.|.+.++.......
T Consensus 15 ~iv~~~~~~g~~~~~~~A~~~gvs~stl~~~~~~~~~~~~ 54 (131)
T 1hlv_A 15 RIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILA 54 (131)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHCCCCcHHHHHHHhCCCHHHHHHHHhchhhhcc
Confidence 45555544455554 8999999999999999988766554
No 47
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=59.97 E-value=16 Score=22.65 Aligned_cols=34 Identities=15% Similarity=0.010 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhc
Q 043121 119 QALLDLIFAVEGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 119 ~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
..+-..+...+.+..+.|+.+|+|.+.+.++...
T Consensus 8 ~~l~~~r~~~gls~~~lA~~~gis~~~i~~~e~g 41 (76)
T 1adr_A 8 ERIRARRKKLKIRQAALGKMVGVSNVAISQWERS 41 (76)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3456677788999999999999999999999875
No 48
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=59.59 E-value=18 Score=22.31 Aligned_cols=35 Identities=23% Similarity=0.003 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 119 QALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 119 ~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
..+-..+...+.+..+.|+.+|+|.+.+.++....
T Consensus 16 ~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~ 50 (74)
T 1y7y_A 16 QRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQ 50 (74)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCC
Confidence 45667778889999999999999999999998753
No 49
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=59.56 E-value=4.5 Score=31.18 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=21.6
Q ss_pred HhcCCHHHHHHHhcCChhHHHHHHhc
Q 043121 127 AVEGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 127 ~~~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
+-.|+++.||+.|++|.+++++-|++
T Consensus 16 ~~~~s~s~AA~~L~isq~avS~~i~~ 41 (306)
T 3fzv_A 16 VECGSVAEASRKLYIAQPSISTAVKG 41 (306)
T ss_dssp HHSSSHHHHHHHHTCCC-CHHHHHHH
T ss_pred HHhCCHHHHHHHhCCCchHHHHHHHH
Confidence 44678999999999999999998864
No 50
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=59.22 E-value=17 Score=22.75 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 119 QALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 119 ~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
..+-..+...+.+..+.|+.+|+|.+.+.++....
T Consensus 10 ~~l~~~r~~~g~sq~~lA~~~gis~~~i~~~e~g~ 44 (78)
T 3b7h_A 10 EHLMELITQQNLTINRVATLAGLNQSTVNAMFEGR 44 (78)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCC
Confidence 44667778889999999999999999999998764
No 51
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=59.10 E-value=7.9 Score=25.04 Aligned_cols=32 Identities=25% Similarity=0.076 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 121 LLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 121 ~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
+.+.+...+ +..+.|+.+|+|.+.+.++....
T Consensus 4 l~~~r~~~g-sq~~lA~~lgvs~~~is~~e~g~ 35 (79)
T 3bd1_A 4 IDIAINKLG-SVSALAASLGVRQSAISNWRARG 35 (79)
T ss_dssp HHHHHHHHS-SHHHHHHHHTCCHHHHHHHHHHT
T ss_pred HHHHHHHhC-CHHHHHHHHCCCHHHHHHHHHCC
Confidence 456667778 99999999999999999998753
No 52
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=58.89 E-value=17 Score=22.66 Aligned_cols=35 Identities=23% Similarity=0.092 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 119 QALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 119 ~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
..+-..+...+.+..+.|+.+|+|.+.+.++....
T Consensus 13 ~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~ 47 (77)
T 2b5a_A 13 RTLKKIRTQKGVSQEELADLAGLHRTYISEVERGD 47 (77)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHCCC
Confidence 44566777889999999999999999999998753
No 53
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=58.84 E-value=16 Score=25.80 Aligned_cols=47 Identities=15% Similarity=0.060 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHH
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVN 161 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n 161 (169)
-..+...++++...+++ +.+.|+..|+|.+.|-+-+.+-..++.++=
T Consensus 12 ~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 61 (195)
T 3ppb_A 12 QAILETALQLFVSQGFHGTSTATIAREAGVATGTLFHHFPSKEQLLEQLF 61 (195)
T ss_dssp HHHHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHH
Confidence 45889999999998764 899999999999999999998888877663
No 54
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=58.71 E-value=15 Score=24.79 Aligned_cols=36 Identities=14% Similarity=0.022 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhcC-ChhHHHHHHhc
Q 043121 117 GMQALLDLIFAVEGSVSEAAKLLWL-STGALSRLILS 152 (169)
Q Consensus 117 ~l~~~lD~l~~~~~~~~~aa~~l~~-st~~L~k~l~~ 152 (169)
-|..+..+|..-+.+++++|..+|+ +.+.+.+.+++
T Consensus 56 Rl~~A~~lL~~~~~si~~iA~~~Gf~~~s~F~r~Fk~ 92 (103)
T 3lsg_A 56 RMEKAKLLLLTTELKNYEIAEQVGFEDVNYFITKFKK 92 (103)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHhCCCCHHHHHHHHHH
Confidence 4777888888888899999999998 78888888765
No 55
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=58.64 E-value=6.5 Score=29.55 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=20.8
Q ss_pred CCHHHHHHHhcCChhHHHHHHhc
Q 043121 130 GSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 130 ~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
|+++.||+.|++|.+++++.|+.
T Consensus 39 gS~s~AA~~L~iSqsavS~~I~~ 61 (135)
T 2ijl_A 39 GSISAAGRAMDMSYRRAWLLVDA 61 (135)
T ss_dssp SCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHH
Confidence 79999999999999999987753
No 56
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=58.42 E-value=17 Score=25.71 Aligned_cols=47 Identities=15% Similarity=0.052 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
..+...++++...+++ +.+.|+..|+|++.|-+-+.+-..++.++-+
T Consensus 6 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 55 (194)
T 3bqz_B 6 KILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILN 55 (194)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHHHTTCCHHHHHHHTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHhCCCchhHHHhCCCHHHHHHHHHH
Confidence 4788899999998864 9999999999999999999988888776644
No 57
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=58.21 E-value=8.2 Score=27.15 Aligned_cols=33 Identities=12% Similarity=0.093 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 119 QALLDLIFAVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 119 ~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
-.+|..|...++.+++.|+.+++|.+.+++.|.
T Consensus 40 ~~iL~~l~~~~~~~~~la~~l~~~~~tvs~~l~ 72 (144)
T 3f3x_A 40 FSILKATSEEPRSMVYLANRYFVTQSAITAAVD 72 (144)
T ss_dssp HHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCChhHHHHHHH
Confidence 346666776666999999999999999998875
No 58
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=57.75 E-value=17 Score=22.61 Aligned_cols=33 Identities=12% Similarity=0.020 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 121 LLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 121 ~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
+-..+...+.+..+.|+.+|+|.+.+.++....
T Consensus 15 l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~ 47 (76)
T 3bs3_A 15 IKVVLAEKQRTNRWLAEQMGKSENTISRWCSNK 47 (76)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTS
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCC
Confidence 445667788999999999999999999998753
No 59
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=57.70 E-value=32 Score=22.19 Aligned_cols=34 Identities=21% Similarity=0.026 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhc
Q 043121 119 QALLDLIFAVEGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 119 ~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
.-+.+.....+++.++.|+.+|+|.+.+.++...
T Consensus 13 ~~ik~~R~~~gltq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 13 QRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4578889999999999999999999999999876
No 60
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=57.39 E-value=17 Score=22.75 Aligned_cols=33 Identities=12% Similarity=-0.000 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 121 LLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 121 ~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
+-..+...+.+.++.|+.+|+|.+.+.++....
T Consensus 13 l~~~r~~~glsq~~lA~~~gis~~~is~~e~g~ 45 (73)
T 3omt_A 13 LKSVLAEKGKTNLWLTETLDKNKTTVSKWCTND 45 (73)
T ss_dssp HHHHHHHHTCCHHHHHHHTTCCHHHHHHHHTTS
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCC
Confidence 455677889999999999999999999999863
No 61
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=57.02 E-value=6.5 Score=30.46 Aligned_cols=26 Identities=35% Similarity=0.327 Sum_probs=22.7
Q ss_pred HhcCCHHHHHHHhcCChhHHHHHHhc
Q 043121 127 AVEGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 127 ~~~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
+-.|+++.||+.|++|.+++++-|++
T Consensus 18 ~~~gs~s~AA~~L~isq~avS~~i~~ 43 (303)
T 3isp_A 18 VELGSFDAAAERLHVTPSAVSQRIKS 43 (303)
T ss_dssp HHHTCHHHHHTTTTCCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHhCCChHHHHHHHHH
Confidence 34689999999999999999998864
No 62
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=57.01 E-value=12 Score=24.74 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=19.8
Q ss_pred CHHHHHHHhcCChhHHHHHHh
Q 043121 131 SVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 131 ~~~~aa~~l~~st~~L~k~l~ 151 (169)
+.+.||+.||+|.+++++-|+
T Consensus 15 s~t~aA~~L~vtQ~AVS~~ir 35 (66)
T 2ovg_A 15 GQTKTAKDLGVYPSSINQAIH 35 (66)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHH
Confidence 899999999999999999875
No 63
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=56.99 E-value=17 Score=25.87 Aligned_cols=48 Identities=10% Similarity=0.023 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
-.++...++++...+++ +.+.|+..|+|.+.|-+-+.+-..++.++=+
T Consensus 20 ~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 70 (206)
T 3kz9_A 20 QQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLN 70 (206)
T ss_dssp HHHHHHHHHHHHHSCCSSCCHHHHHHHHTSCHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 34899999999999877 9999999999999999999988888776644
No 64
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=56.81 E-value=15 Score=22.28 Aligned_cols=31 Identities=13% Similarity=0.101 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIFAVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.++.. ...+.+.+++|+.||+|.+.+-..+.
T Consensus 5 ~vl~l-~~~g~s~~eIA~~l~is~~tV~~~~~ 35 (61)
T 2jpc_A 5 QVLKL-IDEGYTNHGISEKLHISIKTVETHRM 35 (61)
T ss_dssp HHHHH-HHTSCCSHHHHHHTCSCHHHHHHHHH
T ss_pred HHHHH-HHcCCCHHHHHHHhCCCHHHHHHHHH
Confidence 45666 57788999999999999988776544
No 65
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=56.28 E-value=14 Score=24.86 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=26.5
Q ss_pred HHHHHHHHHh-cCCHHHHHHHhcCChhHHHHHHhc
Q 043121 119 QALLDLIFAV-EGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 119 ~~~lD~l~~~-~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
..+++.+... +.++.++|..||+|++.|.+.++.
T Consensus 12 ~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 12 RDAVALYENSDGASLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp HHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHH
Confidence 3455555444 789999999999999999988754
No 66
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=55.49 E-value=19 Score=25.87 Aligned_cols=49 Identities=22% Similarity=0.092 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHHh
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNEL 163 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~~ 163 (169)
-.++...++++...+++ +.+.|+..|+|++.|-+-+.+-..++.++-+.
T Consensus 21 ~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 72 (212)
T 1pb6_A 21 KAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQ 72 (212)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchhhHHHHHHHHCCChhHHHHhCCCHHHHHHHHHHH
Confidence 35889999999998864 99999999999999999999888888776543
No 67
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=55.21 E-value=22 Score=25.47 Aligned_cols=48 Identities=15% Similarity=0.036 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 115 SLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
...+...++++...++ ++.+.|+..|+|.+.|-+-+.+-..++.++-+
T Consensus 19 ~~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 69 (213)
T 2qtq_A 19 DLLLQTASNIMREGDVVDISLSELSLRSGLNSALVKYYFGNKAGLLKALLD 69 (213)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHHHHHSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccccHHHHHHHhCCChhhHhHhcCCHHHHHHHHHH
Confidence 4589999999999887 59999999999999999999998888877644
No 68
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=55.18 E-value=19 Score=25.23 Aligned_cols=47 Identities=13% Similarity=-0.027 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
..+..+++++...+++ +.+.|+..|+|++.|-+-+.+-..++.++=+
T Consensus 12 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 61 (188)
T 3qkx_A 12 QIFSATDRLMAREGLNQLSMLKLAKEANVAAGTIYLYFKNKDELLEQFAH 61 (188)
T ss_dssp HHHHHHHHHHHHSCSTTCCHHHHHHHHTCCHHHHHHHSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHHHcCCHHHHHHHHHH
Confidence 4788999999998865 8999999999999999999888887766543
No 69
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=54.85 E-value=20 Score=23.46 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=24.4
Q ss_pred HHHHHHHH-hcCCHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIFA-VEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~~-~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+++.|.. ...+.++.|+.||+|.+.+.+.|.
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~ 36 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALAVTDYQARYYLL 36 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 45666655 345789999999999998887664
No 70
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=54.67 E-value=20 Score=25.55 Aligned_cols=47 Identities=15% Similarity=0.055 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
..+...++++...++ ++.+.|+..|+|.+.|-+-+.+-..++.++=+
T Consensus 12 ~Il~aA~~l~~~~G~~~~t~~~IA~~Agvs~~tly~~F~sK~~L~~a~~~ 61 (194)
T 3dpj_A 12 QIVAAADELFYRQGFAQTSFVDISAAVGISRGNFYYHFKTKDEILAEVIR 61 (194)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHHCCChHHHHHHcCCHHHHHHHHHH
Confidence 478899999999887 48999999999999999999988888877644
No 71
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=54.58 E-value=20 Score=25.72 Aligned_cols=47 Identities=17% Similarity=0.063 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
.++...++++...+++ +.+.|+..|+|.+.|-+-+.+-..++.++=+
T Consensus 18 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~ 67 (220)
T 3lhq_A 18 HILDVALRLFSQQGVSATSLAEIANAAGVTRGAIYWHFKNKSDLFSEIWE 67 (220)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCCceeehhhcCCHHHHHHHHHH
Confidence 4788999999999875 8999999999999999999988888776644
No 72
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=54.14 E-value=20 Score=25.77 Aligned_cols=49 Identities=10% Similarity=0.034 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHHh
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNEL 163 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~~ 163 (169)
-.++...++++...+++ +.+.|+..|+|.+.|-+-+.+-..++.++-+.
T Consensus 34 ~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~ 85 (218)
T 3dcf_A 34 TQIIKVATELFREKGYYATSLDDIADRIGFTKPAIYYYFKSKEDVLFAIVNS 85 (218)
T ss_dssp HHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 45899999999999865 89999999999999999999888887766543
No 73
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=53.86 E-value=21 Score=25.37 Aligned_cols=47 Identities=19% Similarity=-0.029 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHH
Q 043121 115 SLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVN 161 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n 161 (169)
-.++...++++...++ ++.+.|+..|+|++.|-+-+.+-..++.++=
T Consensus 17 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 66 (203)
T 3f1b_A 17 QQMLDAAVDVFSDRGFHETSMDAIAAKAEISKPMLYLYYGSKDELFAACI 66 (203)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccccHHHHHHHhCCchHHHHHHhCCHHHHHHHHH
Confidence 3488999999999886 5999999999999999999988887776653
No 74
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=53.58 E-value=16 Score=25.03 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIFAVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+|..|...+..+++.|+.+|+|.+.+++.|+
T Consensus 30 ~IL~~L~~~~~~~~ela~~l~is~stvs~~L~ 61 (106)
T 1r1u_A 30 RIMELLSVSEASVGHISHQLNLSQSNVSHQLK 61 (106)
T ss_dssp HHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 45666665555899999999999999987664
No 75
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=53.58 E-value=24 Score=25.86 Aligned_cols=48 Identities=8% Similarity=-0.121 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 115 SLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
-..+...++++...++ ++.+.|+..|+|.+.|-+-+.+-..++.+|=+
T Consensus 11 ~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tiY~~F~sKe~L~~~v~~ 61 (202)
T 2d6y_A 11 ARIFEAAVAEFARHGIAGARIDRIAAEARANKQLIYAYYGNKGELFASVLE 61 (202)
T ss_dssp HHHHHHHHHHHHHHTTTSCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 4578999999999887 59999999999999999999988888877643
No 76
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=53.42 E-value=28 Score=25.45 Aligned_cols=49 Identities=12% Similarity=0.084 Sum_probs=42.4
Q ss_pred CchhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHH
Q 043121 113 KFSLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVN 161 (169)
Q Consensus 113 ~f~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n 161 (169)
..-..+...++++...+++ +.++|+..|+|.+.|-+-+.+-..++.+|=
T Consensus 12 ~r~~Il~aA~~lF~~~Gy~~ts~~~IA~~aGvsk~tlY~~F~sKe~L~~av~ 63 (202)
T 2i10_A 12 DDQVALQTAMELFWRQGYEGTSITDLTKALGINPPSLYAAFGSKRDLFEKTL 63 (202)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCChHHHHHHhCCHHHHHHHHH
Confidence 4456899999999999876 999999999999999999988888877653
No 77
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=53.22 E-value=21 Score=25.85 Aligned_cols=48 Identities=15% Similarity=0.004 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
-.++...++++...+++ +.+.|+..|+|.+.|-+-+.+-..++.++=+
T Consensus 14 ~~Il~aA~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 64 (216)
T 3f0c_A 14 ELIINAAQKRFAHYGLCKTTMNEIASDVGMGKASLYYYFPDKETLFEAVIK 64 (216)
T ss_dssp HHHHHHHHHHHHHHCSSSCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 45899999999999874 8999999999999999999988888776644
No 78
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=53.09 E-value=17 Score=25.54 Aligned_cols=47 Identities=11% Similarity=0.031 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
..+...++++...++ ++.+.|+..|+|++.|-+-+.+-..++.++=+
T Consensus 12 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 61 (194)
T 2g7s_A 12 DILQCARTLIIRGGYNSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVS 61 (194)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCCchHHHHHcCCHHHHHHHHHH
Confidence 478889999999876 48999999999999999999988888776643
No 79
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=53.02 E-value=32 Score=21.36 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=29.4
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 113 KFSLGMQALLDLIFAVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 113 ~f~~~l~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
..++--..++..+ ..+.+.+++|+.||+|.+.+.+.+.
T Consensus 11 ~L~~~e~~il~~~-~~g~s~~eIA~~l~is~~tV~~~~~ 48 (74)
T 1fse_A 11 LLTKREREVFELL-VQDKTTKEIASELFISEKTVRNHIS 48 (74)
T ss_dssp CCCHHHHHHHHHH-TTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 3455556677775 7788999999999999988876654
No 80
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=52.95 E-value=22 Score=25.59 Aligned_cols=49 Identities=10% Similarity=0.051 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHHh
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNEL 163 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~~ 163 (169)
..++...++++...+++ +.+.|+..|+|.+.|-+-+.+-..++.++=+.
T Consensus 17 ~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~ 68 (212)
T 3knw_A 17 QHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKH 68 (212)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHHHH
Confidence 45889999999999875 89999999999999999999888887776543
No 81
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=52.94 E-value=20 Score=26.80 Aligned_cols=47 Identities=17% Similarity=0.063 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
.++...++++...+++ +.+.|+..|+|++.|-+-+.+-..++.++=+
T Consensus 47 ~Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~Y~~F~sKe~Ll~~~~~ 96 (229)
T 3bni_A 47 RILDACADLLDEVGYDALSTRAVALRADVPIGSVYRFFGNKRQMADALAQ 96 (229)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChhhccHHHHHHHHCCCchhHHHHcCCHHHHHHHHHH
Confidence 4789999999998865 8999999999999999999888887776644
No 82
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=52.90 E-value=10 Score=25.47 Aligned_cols=23 Identities=26% Similarity=0.435 Sum_probs=21.1
Q ss_pred CHHHHHHHhcCChhHHHHHHhcC
Q 043121 131 SVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 131 ~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
.+++||++||++.+.|-+|+...
T Consensus 18 Ti~EaAeylgIg~~~l~~L~~~~ 40 (70)
T 1y6u_A 18 TIEEASKYFRIGENKLRRLAEEN 40 (70)
T ss_dssp EHHHHHHHTCSCHHHHHHHHHHC
T ss_pred CHHHHHHHHCcCHHHHHHHHHcC
Confidence 47899999999999999999885
No 83
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=52.86 E-value=24 Score=22.35 Aligned_cols=34 Identities=15% Similarity=0.049 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 120 ALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 120 ~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
.+-..+...+.+..+.|+.+|+|.+.+.++....
T Consensus 6 ~lk~~r~~~glsq~~lA~~~gis~~~i~~~e~g~ 39 (77)
T 2k9q_A 6 ELKVERIRLSLTAKSVAEEMGISRQQLCNIEQSE 39 (77)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTCC
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCC
Confidence 3556778889999999999999999999998764
No 84
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=52.53 E-value=20 Score=24.99 Aligned_cols=39 Identities=23% Similarity=0.185 Sum_probs=31.5
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 113 KFSLGMQALLDLIFAVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 113 ~f~~~l~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
...+.--.+|..|...+-.+++.|+.+++|++.+++.|.
T Consensus 35 ~lt~~~~~iL~~l~~~~~t~~eLa~~l~~s~~tvs~~l~ 73 (146)
T 3tgn_A 35 ALTNTQEHILMLLSEESLTNSELARRLNVSQAAVTKAIK 73 (146)
T ss_dssp CCCHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 444455567888887778899999999999999998775
No 85
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=52.50 E-value=21 Score=24.50 Aligned_cols=38 Identities=13% Similarity=0.048 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHhcC-ChhHHHHHHhcC
Q 043121 116 LGMQALLDLIFAVEGSVSEAAKLLWL-STGALSRLILSD 153 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~~~~~aa~~l~~-st~~L~k~l~~~ 153 (169)
.-|..+..+|..-+.+++++|..+|+ +.+.+++.+++.
T Consensus 59 ~Rl~~A~~lL~~~~~~i~eIA~~~Gf~~~s~F~r~Fk~~ 97 (113)
T 3oio_A 59 LRLNRARQLLQQTSKSIVQIGLACGFSSGPHFSSTYRNH 97 (113)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 34778888998889999999999998 577788877753
No 86
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=52.42 E-value=31 Score=22.07 Aligned_cols=33 Identities=12% Similarity=-0.054 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 121 LLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 121 ~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
+-..+...+.+..+.|+.+|+|.+.+.++....
T Consensus 17 l~~~r~~~gltq~~lA~~~gvs~~~is~~e~g~ 49 (80)
T 3kz3_A 17 WEKKKNELGLSYESVADKMGMGQSAVAALFNGI 49 (80)
T ss_dssp HHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTS
T ss_pred HHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCC
Confidence 445566788999999999999999999998754
No 87
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=52.40 E-value=19 Score=24.11 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 119 QALLDLIFAVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 119 ~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
..+|+.| .....+.+.|+.|++|.+.+.+.|.
T Consensus 34 ~~Il~~L-~~~~~~~eLa~~l~is~~tv~~~L~ 65 (96)
T 1y0u_A 34 RKILRML-DKGRSEEEIMQTLSLSKKQLDYHLK 65 (96)
T ss_dssp HHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3466677 6667899999999999999887664
No 88
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=52.39 E-value=20 Score=22.72 Aligned_cols=37 Identities=30% Similarity=0.143 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 117 GMQALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 117 ~l~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
+-..+-..+...+.+..+.|+.+|+|.+.+.++....
T Consensus 11 ~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~ 47 (84)
T 2ef8_A 11 LVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFE 47 (84)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCC
Confidence 3345667778889999999999999999999998753
No 89
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=52.35 E-value=25 Score=23.47 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 116 LGMQALLDLIFAVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
+--+.++-+....+.+.+++|+.||+|.+.+-+.+.
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ 75 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLH 75 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344557777778889999999999999998876554
No 90
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=52.32 E-value=24 Score=22.59 Aligned_cols=36 Identities=17% Similarity=-0.019 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhc
Q 043121 117 GMQALLDLIFAVEGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 117 ~l~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
+-..+-..+...+.+.++.|+.+|+|.+.+.++...
T Consensus 13 ~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g 48 (88)
T 2wiu_B 13 LANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN 48 (88)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 345566778888999999999999999999999974
No 91
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=52.08 E-value=15 Score=26.29 Aligned_cols=48 Identities=21% Similarity=0.117 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
...+...++++...+++ +.+.|+..|+|.+.|-+-+.+-..++.+|=+
T Consensus 14 ~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 64 (203)
T 3b81_A 14 TELANKIWDIFIANGYENTTLAFIINKLGISKGALYHYFSSKEECADAAIE 64 (203)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCcHHHHHHHhCCCchhHHHHcCCHHHHHHHHHH
Confidence 34789999999998864 8999999999999999998888888776643
No 92
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=52.07 E-value=24 Score=25.59 Aligned_cols=47 Identities=15% Similarity=0.024 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
..+....+++...+++ +.++|+..|+|++.|-+-+.+-..++.+|=+
T Consensus 16 ~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F~sKe~L~~av~~ 65 (197)
T 2hyt_A 16 TLLATARKVFSERGYADTSMDDLTAQASLTRGALYHHFGDKKGLLAAVVE 65 (197)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTCCTTHHHHHHSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 4789999999999874 9999999999999999999888888776643
No 93
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=51.85 E-value=7.1 Score=27.99 Aligned_cols=46 Identities=30% Similarity=0.310 Sum_probs=33.3
Q ss_pred CCCCCCCchhHHHHHHHHHHH-----hcCCHHHHHHHhcCChhHHHHHHhc
Q 043121 107 IGPNNPKFSLGMQALLDLIFA-----VEGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 107 IRtYn~~f~~~l~~~lD~l~~-----~~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
|+.+...+.+.-+.+.|.+.. ...++.+.|+..++|++-++||.++
T Consensus 12 i~~~~~~ls~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kk 62 (111)
T 2o3f_A 12 IQSMXHXLPPSERKLADYILAHPHXAIESTVNEISALANSSDAAVIRLCXS 62 (111)
T ss_dssp HHHHGGGSCHHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHhccCCHHHHHHHHHHHHChHHHHhcCHHHHHHHHCCCHHHHHHHHHH
Confidence 433333455555556665554 4789999999999999999999865
No 94
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=51.74 E-value=24 Score=25.21 Aligned_cols=48 Identities=15% Similarity=0.097 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHHh
Q 043121 116 LGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNEL 163 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~~ 163 (169)
..+...++++...+++ +.+.|+..|+|++.|-+-+.+-..++.++=+.
T Consensus 16 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 66 (202)
T 3lwj_A 16 KILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFYNYFVDKEDILKNLLED 66 (202)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHCSCHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCCchhHHHHcCCHHHHHHHHHHH
Confidence 4788999999999874 99999999999999999998888887766443
No 95
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=51.65 E-value=18 Score=25.71 Aligned_cols=49 Identities=12% Similarity=-0.042 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHHh
Q 043121 115 SLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNEL 163 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~~ 163 (169)
..++...++++...++ ++.+.|+..|+|.+.|-+-+.+-..++.+|=+.
T Consensus 20 ~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 71 (208)
T 3cwr_A 20 ESIVGAAQRLLSSGGAAAMTMEGVASEAGIAKKTLYRFASGRADLIGLLVES 71 (208)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHhccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 4588999999999876 489999999999999999999988888877543
No 96
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=50.98 E-value=24 Score=25.50 Aligned_cols=48 Identities=15% Similarity=0.036 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
-.++...++++...+++ +.+.|+..|+|.+.|-+-+.+-..++.++=+
T Consensus 20 ~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~ 70 (218)
T 3gzi_A 20 DKLILAARNLFIERPYAQVSIREIASLAGTDPGLIRYYFGSKEKLFSTMIH 70 (218)
T ss_dssp HHHHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHHHHHHHSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCcCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 34889999999998874 8999999999999999999888888776643
No 97
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=50.71 E-value=24 Score=25.64 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 115 SLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
-.++...++++...++ ++.+.|+..|+|.+.|-+-+.+-..++.++=+
T Consensus 33 ~~Il~aA~~l~~~~G~~~~t~~~IA~~aGvs~~t~Y~~F~sK~~L~~~~~~ 83 (222)
T 3bru_A 33 QSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYHYFRNKADFGLALIE 83 (222)
T ss_dssp HHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcCcHHHHHHHhCCCcchhhhhCCCHHHHHHHHHH
Confidence 4589999999999887 48999999999999999999888887766543
No 98
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=50.70 E-value=20 Score=25.24 Aligned_cols=48 Identities=15% Similarity=0.048 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
...+...++++...+++ +.+.|+..|+|.+.|-+-+.+-..++.++=+
T Consensus 13 ~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~ 63 (191)
T 3on4_A 13 ERILAVAEALIQKDGYNAFSFKDIATAINIKTASIHYHFPSKEDLGVAVIS 63 (191)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchhhhcCCCHHHHHHHHHH
Confidence 45889999999998765 8999999999999999999988888776644
No 99
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=50.67 E-value=31 Score=24.91 Aligned_cols=46 Identities=15% Similarity=0.087 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHH
Q 043121 116 LGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVN 161 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n 161 (169)
..+...++++...+++ +.++|+..|+|.+.|-+-+.+-..++.++=
T Consensus 13 ~Il~aA~~lf~~~G~~~~t~~~Ia~~Agvs~gt~Y~yF~sKe~L~~~~~ 61 (204)
T 3anp_C 13 RIFRAAMELFRNRGFQETTATEIAKAAHVSRGTFFNYYPYKEAVLLDYG 61 (204)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHCSSTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccHHHHHHHcCCchHHHHHHcCCHHHHHHHHH
Confidence 3788899999998875 899999999999999999988888777653
No 100
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=50.48 E-value=25 Score=24.94 Aligned_cols=46 Identities=22% Similarity=0.114 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHH
Q 043121 116 LGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVN 161 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n 161 (169)
..+....+++...|++ +.+.|+..|+|.+.|-+-+.+-..++.++=
T Consensus 6 ~Il~aA~~lf~~~Gy~~~s~~~Ia~~agvskgtlY~~F~sKe~L~~~~~ 54 (179)
T 2eh3_A 6 RILEVSKELFFEKGYQGTSVEEIVKRANLSKGAFYFHFKSKEELITEII 54 (179)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHhCCCcHHHHHHcCCHHHHHHHHH
Confidence 4678899999999875 899999999999999999988777776653
No 101
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=50.33 E-value=27 Score=23.72 Aligned_cols=30 Identities=10% Similarity=0.112 Sum_probs=23.0
Q ss_pred HHHHHHHHHHh-----cCC--HHHHHHHhcCChhHHH
Q 043121 118 MQALLDLIFAV-----EGS--VSEAAKLLWLSTGALS 147 (169)
Q Consensus 118 l~~~lD~l~~~-----~~~--~~~aa~~l~~st~~L~ 147 (169)
.+.+||.|... ++. +.++|+.||+|++..-
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVr 42 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVR 42 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHH
Confidence 46678888776 554 8899999999987643
No 102
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=50.02 E-value=25 Score=25.50 Aligned_cols=46 Identities=15% Similarity=0.028 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHH
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAV 160 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~ 160 (169)
-..+...++++...+++ +.++|+..|+|.+.|-+-+.+-..++.++
T Consensus 17 ~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY~~F~sKe~L~~~~ 65 (204)
T 2ibd_A 17 TELLDIAATLFAERGLRATTVRDIADAAGILSGSLYHHFDSKESMVDEI 65 (204)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHTTSCHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchhcCHHHHHHHhCCCchhHHHhcCCHHHHHHHH
Confidence 34789999999998876 99999999999999999998888777665
No 103
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=49.85 E-value=26 Score=24.78 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=26.2
Q ss_pred HHHHHHHHHHH-hcCCHHHHHHHhcCChhHHHHHHh
Q 043121 117 GMQALLDLIFA-VEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 117 ~l~~~lD~l~~-~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.|..++.++.. ..-.+++.|+.|++|++.+++.|.
T Consensus 9 ~L~~i~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~ 44 (142)
T 1on2_A 9 YIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQ 44 (142)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 45555665543 345799999999999999998775
No 104
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=49.80 E-value=26 Score=25.13 Aligned_cols=48 Identities=13% Similarity=0.030 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHhcC--CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 115 SLGMQALLDLIFAVEG--SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~--~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
-..+...++++...++ ++.+.|+..|+|.+.|-+-+.+-..++.+|=+
T Consensus 18 ~~Il~aA~~lf~~~G~~~s~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~ 67 (194)
T 2q24_A 18 DKILAAAVRVFSEEGLDAHLERIAREAGVGSGTLYRNFPTREALIEAAYR 67 (194)
T ss_dssp HHHHHHHHHHHHHHCTTCCHHHHHHHTTCCHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcCCCHHHHHHHhCCChHHHHHHcCCHHHHHHHHHH
Confidence 4588999999999876 57889999999999999999888888776543
No 105
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=49.63 E-value=28 Score=25.30 Aligned_cols=48 Identities=13% Similarity=-0.078 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
-..+...++++...+++ +.++|+..|+|.+.|-+-+.+-..++.+|=+
T Consensus 10 ~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvs~gtlY~~F~sKe~L~~av~~ 60 (197)
T 2gen_A 10 DEILQAALACFSEHGVDATTIEMIRDRSGASIGSLYHHFGNKERIHGELYL 60 (197)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCHHHHHHHTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHHCCChHHHHHHCCCHHHHHHHHHH
Confidence 45889999999999874 8999999999999999999888888776643
No 106
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=49.60 E-value=25 Score=26.08 Aligned_cols=49 Identities=10% Similarity=0.051 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHHh
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNEL 163 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~~ 163 (169)
-.++...++++...+++ +.+.|+..|+|.+.|-+-+.+-..++.++=+.
T Consensus 38 ~~Il~aA~~lf~~~G~~~~t~~~IA~~AGvs~~tlY~~F~sKe~L~~~~~~~ 89 (221)
T 3g7r_A 38 ARLLGTATRIFYAEGIHSVGIDRITAEAQVTRATLYRHFSGKDDLILAYLDQ 89 (221)
T ss_dssp HHHHHHHHHHHHHHCSTTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHHH
Confidence 34889999999998865 89999999999999999999888888776543
No 107
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=49.53 E-value=22 Score=26.72 Aligned_cols=48 Identities=15% Similarity=0.002 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHHh
Q 043121 116 LGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNEL 163 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~~ 163 (169)
.++...++++...++ ++.++|+..|+|.+.|-+-+.+-..++.+|-+.
T Consensus 48 ~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~~tlY~~F~sK~~L~~a~~~~ 98 (236)
T 3q0w_A 48 AILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDR 98 (236)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCcHHHHHHHCCCHHHHHHHHHHH
Confidence 488999999999887 599999999999999999999888888776443
No 108
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=49.45 E-value=24 Score=25.70 Aligned_cols=49 Identities=16% Similarity=0.078 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHHh
Q 043121 115 SLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNEL 163 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~~ 163 (169)
...+...++++...++ ++.++|+..|+|.+.|-+-+.+-..++.+|=+.
T Consensus 18 ~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~Y~~F~sKe~L~~~~~~~ 69 (221)
T 3c2b_A 18 NAVLDQALRLLVEGGEKALTTSGLARAANCSKESLYKWFGDRDGLLAAMITF 69 (221)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHHHHhCCCHHHHHHHHHHH
Confidence 3588999999999876 499999999999999999999988888776543
No 109
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=49.37 E-value=23 Score=26.45 Aligned_cols=48 Identities=13% Similarity=-0.101 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHHh
Q 043121 116 LGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNEL 163 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~~ 163 (169)
.++...++++...+++ +.++|+..|+|.+.|-+-+.+-..++.+|=+.
T Consensus 44 ~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~F~sK~~L~~~v~~~ 94 (225)
T 2id3_A 44 AVLLAAGDALAADGFDALDLGEIARRAGVGKTTVYRRWGTPGGLAADLLAD 94 (225)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHH
Confidence 4788999999998865 89999999999999999999988888776443
No 110
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=49.27 E-value=21 Score=23.56 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=20.8
Q ss_pred CHHHHHHHhcCChhHHHHHHhcC
Q 043121 131 SVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 131 ~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
+.+.+|+.||+|.+++++.++..
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~~~ 37 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLKRG 37 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHHTT
T ss_pred CHHHHHHHhCCCHHHHHHHHHhc
Confidence 89999999999999999988643
No 111
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=49.24 E-value=17 Score=28.46 Aligned_cols=51 Identities=16% Similarity=0.083 Sum_probs=37.8
Q ss_pred HHHHHHHHHHH---hcCCHHHHHHHhcCChhHHHHHHhcC-hhHHHHHHHhhhhc
Q 043121 117 GMQALLDLIFA---VEGSVSEAAKLLWLSTGALSRLILSD-DSHQIAVNELRTSK 167 (169)
Q Consensus 117 ~l~~~lD~l~~---~~~~~~~aa~~l~~st~~L~k~l~~~-~~~~~~~n~~R~~~ 167 (169)
.+..+++.|.. ...++++.|+.+|+|++.|.++++.- -+....+++.|..+
T Consensus 170 ~~~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~G~t~~~~l~~~Rl~~ 224 (276)
T 3gbg_A 170 AMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISY 224 (276)
T ss_dssp HHHHHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45556666654 35679999999999999999999741 36667777777654
No 112
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=49.02 E-value=16 Score=25.67 Aligned_cols=47 Identities=17% Similarity=0.004 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
..+...++++...++ ++.+.|+..|+|++.|-+-+.+-..++.++=+
T Consensus 8 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 57 (170)
T 3egq_A 8 RIIEAALRLYMKKPPHEVSIEEIAREAKVSKSLIFYHFESKQKLLEEAVM 57 (170)
T ss_dssp HHHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccCcHHHHHHHhCCCchhHHHHcCCHHHHHHHHHH
Confidence 467888888888876 59999999999999999999988888777644
No 113
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=48.85 E-value=21 Score=26.03 Aligned_cols=47 Identities=13% Similarity=0.097 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHH
Q 043121 115 SLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVN 161 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n 161 (169)
..++...++++...++ ++.++|+..|+|.+.|-+-+.+-..++.++=
T Consensus 26 ~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~ 75 (214)
T 2zb9_A 26 AEVLHAVGELLLTEGTAQLTFERVARVSGVSKTTLYKWWPSKGALALDGY 75 (214)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH
Confidence 3478899999999876 5999999999999999999998888876653
No 114
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=48.81 E-value=26 Score=26.12 Aligned_cols=48 Identities=13% Similarity=-0.065 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
-.+|...++++...+++ +.++|+..|+|.+.|-+-+.+-..++.+|=+
T Consensus 17 ~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~~tlY~~F~sKe~L~~av~~ 67 (208)
T 3v6g_A 17 QAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALA 67 (208)
T ss_dssp HHHHHHHHHHHHHHCTTCCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchhHHHHcCCHHHHHHHHHH
Confidence 35889999999999875 8999999999999999999998888877644
No 115
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=48.78 E-value=31 Score=25.18 Aligned_cols=47 Identities=13% Similarity=-0.076 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
..+...++++...+++ +.++|+..|+|.+.|-+-+.+-..++.+|=+
T Consensus 16 ~Il~aA~~lf~~~G~~~ts~~~IA~~aGvsk~tlY~~F~sKe~L~~~~~~ 65 (211)
T 3bhq_A 16 EIIQAATAAFISKGYDGTSMEEIATKAGASKQTVYKHFTDKETLFGEVVL 65 (211)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 4788999999998875 8999999999999999999888888776643
No 116
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=48.73 E-value=27 Score=25.37 Aligned_cols=46 Identities=17% Similarity=0.047 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHH
Q 043121 116 LGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVN 161 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n 161 (169)
..+...++++...|++ +.++|+..|+|.+.|-+-+.+-..++.+|=
T Consensus 14 ~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t~Y~~F~sKe~L~~a~~ 62 (210)
T 3vib_A 14 HLMLAALETFYRKGIARTSLNEIAQAAGVTRDALYWHFKNKEDLFDALF 62 (210)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHHHHCCCHHHHHHHHH
Confidence 4788999999999875 899999999999999999988888777653
No 117
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=48.61 E-value=23 Score=26.29 Aligned_cols=49 Identities=12% Similarity=-0.052 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHHh
Q 043121 115 SLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNEL 163 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~~ 163 (169)
-.++...++++...++ ++.+.|+..|+|.+.|-+-+.+-..++.+|=+.
T Consensus 31 ~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~~F~sK~~Ll~a~~~~ 82 (217)
T 3hta_A 31 QRIIDAAIRVVGQKGIAGLSHRTVAAEADVPLGSTTYHFATLDDLMVAALRQ 82 (217)
T ss_dssp HHHHHHHHHHHHHHTGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHcCCCcchhhhcCCCHHHHHHHHHHH
Confidence 3489999999999987 599999999999999999999888888776543
No 118
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=48.58 E-value=24 Score=25.67 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
..+...++++...|++ +.++|+..|+|.+.|-+-+.+-..++.+|=+
T Consensus 15 ~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~~F~sKe~L~~~~~~ 64 (210)
T 2xdn_A 15 QIIEAAERAFYKRGVARTTLADIAELAGVTRGAIYWHFNNKAELVQALLD 64 (210)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTCCTTHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCcHHHHHHHHCCChHHHHHHhCCHHHHHHHHHH
Confidence 4788999999998875 8999999999999999999888877766543
No 119
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=48.36 E-value=18 Score=24.30 Aligned_cols=33 Identities=12% Similarity=0.225 Sum_probs=27.0
Q ss_pred HHHHHHHHHhc----CCHHHHHHHhcCChhHHHHHHh
Q 043121 119 QALLDLIFAVE----GSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 119 ~~~lD~l~~~~----~~~~~aa~~l~~st~~L~k~l~ 151 (169)
..+|+.|...+ -.+++.|+.||+|.+.+-+.|.
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~ 53 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLY 53 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 66788888887 3679999999999998776654
No 120
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=48.33 E-value=11 Score=24.74 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=24.1
Q ss_pred HHHHHHHHh-cCCHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIFAV-EGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~~~-~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+|..|... ..++++.|+.||+|.+.+.+.|.
T Consensus 28 ~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~ 60 (99)
T 3cuo_A 28 LILCMLSGSPGTSAGELTRITGLSASATSQHLA 60 (99)
T ss_dssp HHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 456666554 34688999999999999887765
No 121
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=48.29 E-value=34 Score=21.76 Aligned_cols=36 Identities=19% Similarity=0.059 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 118 MQALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 118 l~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
-..+-......+.+..+.|+.+|+|.+.+.++....
T Consensus 16 ~~~l~~~R~~~gltq~elA~~~gis~~~is~~e~g~ 51 (83)
T 3f6w_A 16 LDLLLEARSAAGITQKELAARLGRPQSFVSKTENAE 51 (83)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCC
Confidence 345666778899999999999999999999998764
No 122
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=48.18 E-value=21 Score=25.73 Aligned_cols=47 Identities=11% Similarity=0.019 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
..+...++++...++ ++.+.|+..|+|.+.|-+-+.+-..++.+|-+
T Consensus 12 ~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~ 61 (199)
T 2o7t_A 12 HIITTTCNLYRTHHHDSLTMENIAEQAGVGVATLYRNFPDRFTLDMACAQ 61 (199)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 478889999998876 48999999999999999999988888877644
No 123
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=48.04 E-value=32 Score=22.63 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 120 ALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 120 ~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
.+-..+...+.+..+.|+.+|+|.+.+.+++...
T Consensus 12 ~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~ 45 (94)
T 2ict_A 12 IIQESLDELNVSLREFARAMEIAPSTASRLLTGK 45 (94)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHTS
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCC
Confidence 3456677889999999999999999999998764
No 124
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=48.02 E-value=28 Score=25.52 Aligned_cols=48 Identities=13% Similarity=0.014 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
...+....+++...|++ +.++|+..|+|.+.|-+-+.+-..++.+|=+
T Consensus 14 ~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~~F~sKe~L~~a~~~ 64 (210)
T 2wui_A 14 DGILDAAERVFLEKGVGTTAMADLADAAGVSRGAVYGHYKNKIEVCLAMCD 64 (210)
T ss_dssp HHHHHHHHHHHHHSCTTTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 35889999999998765 8999999999999999999887777776543
No 125
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=47.96 E-value=35 Score=23.82 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=28.2
Q ss_pred HHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 123 DLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 123 D~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
+++...+.+..+.|+.+|+|.+.+++++...
T Consensus 21 ~lr~~~gltq~eLA~~lGis~~~is~ie~G~ 51 (104)
T 3trb_A 21 ELGFLDKMSANQLAKHLAIPTNRVTAILNGA 51 (104)
T ss_dssp HHHHTTSCCHHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHcCC
Confidence 4789999999999999999999999999854
No 126
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=47.95 E-value=25 Score=24.07 Aligned_cols=33 Identities=12% Similarity=0.225 Sum_probs=25.7
Q ss_pred HHHHHHHHHhc----CCHHHHHHHhcCChhHHHHHHh
Q 043121 119 QALLDLIFAVE----GSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 119 ~~~lD~l~~~~----~~~~~aa~~l~~st~~L~k~l~ 151 (169)
..+|+.|...+ -...+.|+.||+|.+.+-+.|.
T Consensus 13 ~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~ 49 (81)
T 1qbj_A 13 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLY 49 (81)
T ss_dssp HHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 45778888777 4679999999999988766553
No 127
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=47.93 E-value=28 Score=25.08 Aligned_cols=47 Identities=17% Similarity=0.092 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
..+...++++...+++ +.+.|+..|+|.+.|-+-+.+-..++.++-+
T Consensus 8 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 57 (185)
T 2yve_A 8 MILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIYHFPSRHALLLGMHE 57 (185)
T ss_dssp HHHHHHHHHHHHSCSTTCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcChhhccHHHHHHHhCCChHHHHHhCcCHHHHHHHHHH
Confidence 4788899999998875 8999999999999999999988888876654
No 128
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=47.86 E-value=22 Score=25.45 Aligned_cols=50 Identities=20% Similarity=0.081 Sum_probs=43.3
Q ss_pred chhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHHh
Q 043121 114 FSLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNEL 163 (169)
Q Consensus 114 f~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~~ 163 (169)
.-..+...++++...++ ++.+.|+..|+|.+.|-+-+.+-..++.++-+.
T Consensus 10 r~~Il~AA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~a~~~~ 62 (195)
T 3frq_A 10 DDEVLEAATVVLKRCGPIEFTLSGVAKEVGLSRAALIQRFTNRDTLLVRMMER 62 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 45688999999999877 699999999999999999999988888776553
No 129
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=47.84 E-value=16 Score=26.20 Aligned_cols=31 Identities=29% Similarity=0.300 Sum_probs=24.0
Q ss_pred HHHHHHHhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 121 LLDLIFAVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 121 ~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
+|..|......++++|+.||+|.+.+++.|+
T Consensus 51 IL~~L~~~~~s~~ela~~lgis~stvs~~L~ 81 (122)
T 1r1t_A 51 LLSLLARSELCVGDLAQAIGVSESAVSHQLR 81 (122)
T ss_dssp HHHHHTTCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4455544456899999999999999987765
No 130
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=47.78 E-value=26 Score=25.25 Aligned_cols=49 Identities=16% Similarity=0.059 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHHh
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNEL 163 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~~ 163 (169)
-.++...++++...+++ +.+.|+..|+|.+.|-+-+.+-..++.++-+.
T Consensus 13 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 64 (216)
T 3s5r_A 13 ELLLDAATTLFAEQGIAATTMAEIAASVGVNPAMIHYYFKTRDSLLDTIIEE 64 (216)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHTTTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHHCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 45789999999998865 89999999999999999999888887776543
No 131
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=47.75 E-value=29 Score=25.13 Aligned_cols=46 Identities=22% Similarity=0.053 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHH
Q 043121 116 LGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVN 161 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n 161 (169)
..+...++++...|++ +.++|+..|+|++.|-.-+.+-..++.++=
T Consensus 14 ~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~gtlY~yF~sKe~L~~a~~ 62 (194)
T 2nx4_A 14 SITAAAWRLIAARGIEAANMRDIATEAGYTNGALSHYFAGKDEILRTSY 62 (194)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHHhCcCHHHHHHHHH
Confidence 4788899999998875 999999999999999999988888876653
No 132
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=47.73 E-value=28 Score=25.82 Aligned_cols=46 Identities=20% Similarity=0.080 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHH
Q 043121 115 SLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAV 160 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~ 160 (169)
-..+....+++...|+ ++.++|+..|+|.+.|-+-+.+-..++.++
T Consensus 12 ~~Il~aA~~lf~~~Gy~~ts~~~IA~~AGvskgtlY~~F~sKe~L~~~~ 60 (215)
T 1ui5_A 12 ATIIGAAADLFDRRGYESTTLSEIVAHAGVTKGALYFHFAAKEDLAHAI 60 (215)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchhhHhhCCCHHHHHHHH
Confidence 4588999999999987 499999999999999999998877777655
No 133
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=47.66 E-value=22 Score=25.62 Aligned_cols=48 Identities=17% Similarity=-0.003 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 115 SLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
-..+...++++...++ ++.+.|+..|+|.+.|-+-+.+-..++.++=+
T Consensus 12 ~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~ 62 (193)
T 2dg8_A 12 ERILAATLDLIAEEGIARVSHRRIAQRAGVPLGSMTYHFTGIEQLLREAFG 62 (193)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhccHHHHHHHhCCCchhhheeCCCHHHHHHHHHH
Confidence 4588999999999886 59999999999999999999888887776543
No 134
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=47.61 E-value=36 Score=23.21 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 120 ALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 120 ~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
-+...+...+++..+.|+.+|+|.+.+.++....
T Consensus 28 rLk~lR~~~glTq~eLA~~~GiS~~tis~iE~G~ 61 (88)
T 3t76_A 28 KLWKLLIDRDMKKGELREAVGVSKSTFAKLGKNE 61 (88)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCC
Confidence 4677888999999999999999999999998764
No 135
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=47.25 E-value=25 Score=27.52 Aligned_cols=37 Identities=16% Similarity=0.054 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhcC-ChhHHHHHHhcC
Q 043121 117 GMQALLDLIFAVEGSVSEAAKLLWL-STGALSRLILSD 153 (169)
Q Consensus 117 ~l~~~lD~l~~~~~~~~~aa~~l~~-st~~L~k~l~~~ 153 (169)
-|..+..+|..-+.+++++|..+|+ +++.++|.+++.
T Consensus 221 Rl~~A~~lL~~~~~si~eIA~~~Gf~~~s~F~r~Fkk~ 258 (276)
T 3gbg_A 221 RISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKST 258 (276)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4778888888888899999999998 688899888863
No 136
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=47.10 E-value=30 Score=23.50 Aligned_cols=36 Identities=8% Similarity=0.038 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhcC-ChhHHHHHHhc
Q 043121 117 GMQALLDLIFAVEGSVSEAAKLLWL-STGALSRLILS 152 (169)
Q Consensus 117 ~l~~~lD~l~~~~~~~~~aa~~l~~-st~~L~k~l~~ 152 (169)
-|..+..+|..-+.+++++|..+|+ +.+.+++.+++
T Consensus 57 Rl~~A~~lL~~~~~si~~IA~~~Gf~~~s~F~r~Fk~ 93 (107)
T 2k9s_A 57 RISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKK 93 (107)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHH
Confidence 4777888888889999999999998 46777777765
No 137
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=46.97 E-value=16 Score=25.79 Aligned_cols=48 Identities=15% Similarity=0.055 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 115 SLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
...+...++++...++ ++.+.|+..|+|.+.+-+-+.+-..++.++=+
T Consensus 13 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 63 (196)
T 3col_A 13 VKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSNVYLYFKNKQALIDSVYA 63 (196)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHHHHhCCHHHHHHHHHH
Confidence 4588999999999876 48999999999999999988887777766533
No 138
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=46.77 E-value=21 Score=25.33 Aligned_cols=48 Identities=15% Similarity=0.041 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
-.++...++++...+++ +.+.|+..|+|.+.|-+-+.+-..++.++=+
T Consensus 14 ~~il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 64 (196)
T 3he0_A 14 DQILAAAEQLIAESGFQGLSMQKLANEAGVAAGTIYRYFSDKEHLLEEVRL 64 (196)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchHHHhcCCHHHHHHHHHH
Confidence 45899999999999865 8999999999999999988888777766543
No 139
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=46.72 E-value=30 Score=25.07 Aligned_cols=45 Identities=13% Similarity=0.014 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHH
Q 043121 116 LGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAV 160 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~ 160 (169)
..+.++++++...+. ++.+.|+..|+|++.|-+-+.+-..++.++
T Consensus 16 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~~K~~L~~~~ 63 (189)
T 3vp5_A 16 RVYDACLNEFQTHSFHEAKIMHIVKALDIPRGSFYQYFEDLKDAYFYV 63 (189)
T ss_dssp HHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHCCcccccHHHHHHHhCCChHHHHHHCCCHHHHHHHH
Confidence 478899999999887 489999999999999999888777776654
No 140
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=46.68 E-value=23 Score=25.04 Aligned_cols=49 Identities=20% Similarity=0.009 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHHh
Q 043121 115 SLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNEL 163 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~~ 163 (169)
-..+...++++...++ ++.+.|+..|+|.+.|-+-+.+-..++.++=+.
T Consensus 11 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 62 (206)
T 3dew_A 11 SRLMEVATELFAQKGFYGVSIRELAQAAGASISMISYHFGGKEGLYAAVLQE 62 (206)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 3478899999999886 499999999999999999998888888776543
No 141
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=46.56 E-value=35 Score=23.46 Aligned_cols=35 Identities=6% Similarity=0.055 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhc---CCHHHHHHHhcCChhHHHHHHh
Q 043121 117 GMQALLDLIFAVE---GSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 117 ~l~~~lD~l~~~~---~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.--.+|..|...+ -.+++.|+.++++.+.++++|.
T Consensus 35 ~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~ 72 (141)
T 3bro_A 35 TQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQ 72 (141)
T ss_dssp HHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHH
Confidence 3345677777765 4799999999999999998775
No 142
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=46.46 E-value=31 Score=24.81 Aligned_cols=45 Identities=11% Similarity=0.063 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHH
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIA 159 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~ 159 (169)
-..+...++++...+++ +.+.|+..|+|.+.|-+-+.+-..++..
T Consensus 15 ~~Il~aA~~lf~e~G~~~~t~~~IA~~agvsk~tlY~~F~sKe~L~~~ 62 (192)
T 2fq4_A 15 KAILSASYELLLESGFKAVTVDKIAERAKVSKATIYKWWPNKAAVVMD 62 (192)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHHHHHCCCHHHHHHH
Confidence 45889999999998875 9999999999999999999887777754
No 143
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=46.24 E-value=47 Score=22.15 Aligned_cols=32 Identities=19% Similarity=0.006 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCHHHHHHHhcCChhHHHHHHhc
Q 043121 121 LLDLIFAVEGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 121 ~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
+-..+...+.+..+.|+.+|+|++.+.++...
T Consensus 6 l~~~r~~~gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 6 IKQYRKEKGYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 45667788899999999999999999999886
No 144
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=46.21 E-value=25 Score=23.75 Aligned_cols=32 Identities=22% Similarity=0.161 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIFAVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+|..|....-.+++.|+.||+|.+.+.+.|.
T Consensus 25 ~IL~~L~~~~~~~~ela~~l~is~~tv~~~l~ 56 (114)
T 2oqg_A 25 EILTELGRADQSASSLATRLPVSRQAIAKHLN 56 (114)
T ss_dssp HHHHHHHHSCBCHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 45666655556789999999999999988765
No 145
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=46.21 E-value=34 Score=24.40 Aligned_cols=39 Identities=21% Similarity=0.153 Sum_probs=31.2
Q ss_pred chhHHHHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhc
Q 043121 114 FSLGMQALLDLIFAVEGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 114 f~~~l~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
.|+--..++-.....+.+.+++|+.||+|.+.+-+.+..
T Consensus 23 L~~~~r~vl~l~y~~g~s~~EIA~~lgiS~~tV~~~l~r 61 (113)
T 1s7o_A 23 LTDKQMNYIELYYADDYSLAEIADEFGVSRQAVYDNIKR 61 (113)
T ss_dssp SCHHHHHHHHHHHHTCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 345556677777788999999999999999988766543
No 146
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=46.10 E-value=24 Score=25.75 Aligned_cols=48 Identities=23% Similarity=0.092 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
-.++...++++...+++ +.++|+..|+|.+.|-+-+.+-..++.++=+
T Consensus 12 ~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~gtlY~~F~sKe~L~~a~~~ 62 (203)
T 2np5_A 12 ERLAAALFDVAAESGLEGASVREVAKRAGVSIGAVQHHFSTKDEMFAFALR 62 (203)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 45889999999998865 9999999999999999999888888776543
No 147
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=46.09 E-value=41 Score=24.33 Aligned_cols=47 Identities=17% Similarity=0.103 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHH
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVN 161 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n 161 (169)
...+...++++...|++ +.++|+..|+|.+.|-+-+.+-..++.++=
T Consensus 13 ~~Il~aA~~lf~~~G~~~~s~~~Ia~~Agvskgt~Y~yF~sKe~L~~~~~ 62 (197)
T 2f07_A 13 EKILQAAIEVISEKGLDKASISDIVKKAGTAQGTFYLYFSSKNALIPAIA 62 (197)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHCSSSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchHHHHhCCCHHHHHHHHH
Confidence 45899999999998875 999999999999999999998888876653
No 148
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=46.04 E-value=16 Score=26.13 Aligned_cols=48 Identities=13% Similarity=-0.016 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHHh
Q 043121 116 LGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNEL 163 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~~ 163 (169)
.++...++++...++ ++.+.|+..|+|++.|-+-+.+-..++.++=+.
T Consensus 24 ~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~ 74 (203)
T 3mnl_A 24 RILDATMAIASKGGYEAVQMRAVADRADVAVGTLYRYFPSKVHLLVSALGR 74 (203)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHcCCChhHHHHHcCCHHHHHHHHHHH
Confidence 478889999998865 589999999999999999999888887766443
No 149
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=45.81 E-value=36 Score=24.83 Aligned_cols=47 Identities=9% Similarity=0.015 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHhc--CCHHHHHHHhcCChhHHHHHHhcChhHHHHHH
Q 043121 115 SLGMQALLDLIFAVE--GSVSEAAKLLWLSTGALSRLILSDDSHQIAVN 161 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~--~~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n 161 (169)
-..+...++++...+ -++.+.|+..|+|.+.|-+-+.+-..++.++=
T Consensus 23 ~~Il~aA~~lf~~~G~~~s~~~IA~~aGvs~~tlY~~F~sK~~L~~a~~ 71 (215)
T 2hku_A 23 DALFTAATELFLEHGEGVPITQICAAAGAHPNQVTYYYGSKERLFVEVA 71 (215)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 458999999999988 34899999999999999999998888887663
No 150
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=45.28 E-value=28 Score=22.98 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=28.3
Q ss_pred chhHHHHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 114 FSLGMQALLDLIFAVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 114 f~~~l~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+.--..++.++ ..+.+.+++|+.||+|.+.+-+.+.
T Consensus 22 Lt~~e~~vl~l~-~~g~s~~eIA~~l~is~~tV~~~l~ 58 (82)
T 1je8_A 22 LTPRERDILKLI-AQGLPNKMIARRLDITESTVKVHVK 58 (82)
T ss_dssp SCHHHHHHHHHH-TTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344456677774 7888999999999999988776553
No 151
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=45.11 E-value=20 Score=25.42 Aligned_cols=47 Identities=15% Similarity=-0.060 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
..+...++++...++ ++.+.|+..|+|++.|-+-+.+-..++.++=+
T Consensus 11 ~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~ 60 (186)
T 2jj7_A 11 NILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMASYYFNGKENLYYEVFK 60 (186)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHHSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHhCCChhhhhhhcCCHHHHHHHHHH
Confidence 467888888888774 58999999999999999999988888877644
No 152
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=45.00 E-value=42 Score=22.12 Aligned_cols=34 Identities=9% Similarity=0.034 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhc
Q 043121 119 QALLDLIFAVEGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 119 ~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
..+...+...+.+..+.|+.+|+|.+.|++.+..
T Consensus 12 ~ri~~~l~~~glT~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 12 ADVIAGLKKRKLSLSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp HHHHHHHHTTSCCHHHHHHHHSSCHHHHHHTTTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3455666788999999999999999999998875
No 153
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=44.81 E-value=32 Score=24.01 Aligned_cols=32 Identities=19% Similarity=0.119 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhc
Q 043121 120 ALLDLIFAVEGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 120 ~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
.++- +...+.+.+++|+.||+|.+.+-+.+..
T Consensus 116 ~v~~-~~~~g~s~~EIA~~lgis~~tV~~~~~r 147 (164)
T 3mzy_A 116 EVLT-YLIRGYSYREIATILSKNLKSIDNTIQR 147 (164)
T ss_dssp HHHH-HHTTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHH-HHHcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3444 5678889999999999999998766543
No 154
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=44.78 E-value=17 Score=23.27 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=22.0
Q ss_pred hHHHHHHhcChhHHHHHHHhhhhcc
Q 043121 144 GALSRLILSDDSHQIAVNELRTSKV 168 (169)
Q Consensus 144 ~~L~k~l~~~~~~~~~~n~~R~~~~ 168 (169)
-+++.+|+++|.+.+++=.+|+.|.
T Consensus 20 qqvl~ILksnPqLMAAfIkQR~~~y 44 (47)
T 1zoq_C 20 QQVLNILKSNPQLMAAFIKQRTAKY 44 (47)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHh
Confidence 4788999999999999999998763
No 155
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=44.65 E-value=33 Score=24.59 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=25.1
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHhcCChhHHHHHHh
Q 043121 118 MQALLDLIFA-VEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 118 l~~~lD~l~~-~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
+..+++.+.. .+..++++|+.|++|.+.+++.|.
T Consensus 42 ~~~i~~~l~~~~~~~~~~la~~l~vs~~tvs~~l~ 76 (155)
T 2h09_A 42 VELISDLIREVGEARQVDMAARLGVSQPTVAKMLK 76 (155)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcCHHHHHHHhCcCHHHHHHHHH
Confidence 3444445554 345789999999999999998775
No 156
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=44.55 E-value=27 Score=25.03 Aligned_cols=48 Identities=23% Similarity=0.093 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHHh
Q 043121 116 LGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNEL 163 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~~ 163 (169)
..+...++++...++ ++.+.|+..|+|.+.|-+-+.+-..++.++-+.
T Consensus 30 ~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 80 (217)
T 3mvp_A 30 KILQVAKDLFSDKTYFNVTTNEIAKKADVSVGTLYAYFASKEDILTALLKR 80 (217)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccccCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHH
Confidence 478999999999886 499999999999999999999888888776553
No 157
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=44.29 E-value=42 Score=21.31 Aligned_cols=35 Identities=9% Similarity=-0.058 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 119 QALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 119 ~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
..+-......+.+..+.|+.+|+|.+.+.++....
T Consensus 14 ~~lk~~R~~~glsq~~lA~~~gis~~~i~~~e~g~ 48 (82)
T 3s8q_A 14 FVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNS 48 (82)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCC
Confidence 44566777889999999999999999999998763
No 158
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=44.22 E-value=46 Score=22.29 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 120 ALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 120 ~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
.+-..+...+.+.++.|+.+|+|.+.++++....
T Consensus 22 ~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~ 55 (104)
T 3cec_A 22 VIADILDDLDINTANFAEILGVSNQTIQEVINGQ 55 (104)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCC
Confidence 3466677889999999999999999999999754
No 159
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=44.20 E-value=19 Score=25.47 Aligned_cols=48 Identities=13% Similarity=0.048 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
...+...++++...+++ +.+.|+..|+|.+.|-+-+.+-..++.++=+
T Consensus 13 ~~Il~aa~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~ 63 (197)
T 3rd3_A 13 QHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSFYHYFKSKEQFGQALLE 63 (197)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHTTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCcccCCHHHHHHHhCCChhhHHHHcCCHHHHHHHHHH
Confidence 45889999999998874 9999999999999999988887777766543
No 160
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=44.16 E-value=33 Score=26.01 Aligned_cols=48 Identities=13% Similarity=0.077 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 115 SLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
-..+....+++...++ ++.+.|+..|+|.+.|-+-+.+-..++.+|=+
T Consensus 26 ~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY~~F~sKe~L~~av~~ 76 (231)
T 2zcx_A 26 EAILDAARELGTERGIREITLTDIAATVGMHKSALLRYFETREQIFLKITA 76 (231)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHHHHhCCCHHHHHHHHHH
Confidence 3488999999999886 48999999999999999999988888877644
No 161
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=44.15 E-value=31 Score=23.40 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=30.0
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 113 KFSLGMQALLDLIFAVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 113 ~f~~~l~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
..+.--..++.++ ..+.+.+++|+.||+|.+.+-+.+.
T Consensus 27 ~Lt~~e~~vl~l~-~~g~s~~eIA~~l~is~~tV~~~l~ 64 (95)
T 3c57_A 27 GLTDQERTLLGLL-SEGLTNKQIADRMFLAEKTVKNYVS 64 (95)
T ss_dssp CCCHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4555566778877 8889999999999999988765543
No 162
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=44.04 E-value=25 Score=23.27 Aligned_cols=35 Identities=20% Similarity=0.077 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 119 QALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 119 ~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
..+-..+...+.+.++.|+.+|+|.+.+.++....
T Consensus 12 ~~lk~~r~~~glsq~~lA~~~gis~~~is~~e~G~ 46 (94)
T 2kpj_A 12 ENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGI 46 (94)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHTCCHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhCC
Confidence 34555666778899999999999999999998753
No 163
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=44.01 E-value=33 Score=25.79 Aligned_cols=47 Identities=13% Similarity=-0.023 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHH
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVN 161 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n 161 (169)
-.++...++++...+++ +.++|+..|+|.+.|-+.+.+-..++.++-
T Consensus 10 ~~Il~aA~~l~~~~G~~~~tv~~Ia~~agvs~~t~y~~F~~K~~L~~~~~ 59 (213)
T 3ni7_A 10 DAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWF 59 (213)
T ss_dssp HHHHHHHHHHHHHSCSTTCCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHH
Confidence 34788999999999876 899999999999999999987777766553
No 164
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=43.99 E-value=23 Score=24.99 Aligned_cols=47 Identities=15% Similarity=0.125 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
..+...++++...++ ++.+.|+..|+|.+.|-+-+.+-..++.++=+
T Consensus 18 ~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~a~~~ 67 (156)
T 3ljl_A 18 KIMDAVVDQLLRLGYDKMSYTTLSQQTGVSRTGISHHFPKKTDFTAALDG 67 (156)
T ss_dssp HHHHHHHHHHHHTHHHHCCHHHHHHHHTCCHHHHHHHCSSTHHHHHHHTT
T ss_pred HHHHHHHHHHHHhChhhcCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHH
Confidence 478899999988876 48999999999999999999998888877644
No 165
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=43.98 E-value=88 Score=22.55 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 118 MQALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 118 l~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
-..++..+ ..+.++.++|+.||+|.+.+.+.++..
T Consensus 31 r~~ii~l~-~~G~s~~~IA~~lgis~~TV~rwl~r~ 65 (159)
T 2k27_A 31 RQRIVDLA-HQGVRPCDISRQLRVSHGCVSKILGRY 65 (159)
T ss_dssp HHHHHHHH-HHTCCHHHHHHHHTCCSHHHHHHHCCS
T ss_pred HHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34455555 468899999999999999999998763
No 166
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=43.94 E-value=32 Score=24.70 Aligned_cols=47 Identities=19% Similarity=0.025 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHhcC--CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAVEG--SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~--~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
..+...++++...++ ++.++|+..|+|.+.|-+-+.+-..++.++=+
T Consensus 20 ~Il~aA~~lf~~~G~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 68 (199)
T 2rek_A 20 RIIEAAAAEVARHGADASLEEIARRAGVGSATLHRHFPSRWGLLQAVFQ 68 (199)
T ss_dssp HHHHHHHHHHHHHGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHhCCchHHHHHHCCCHHHHHHHHHH
Confidence 478888889988765 78899999999999999999888888776643
No 167
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=43.92 E-value=31 Score=25.77 Aligned_cols=47 Identities=15% Similarity=-0.044 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHH
Q 043121 115 SLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVN 161 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n 161 (169)
..++...++++...++ ++.++|+..|+|.+.|-+-+.+-..++.++-
T Consensus 42 ~~Il~AA~~lf~e~G~~~~tv~~IA~~AGvs~~tlY~~F~sKe~Ll~av~ 91 (214)
T 2guh_A 42 SLIVDAAGRAFATRPYREITLKDIAEDAGVSAPLIIKYFGSKEQLFDALV 91 (214)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHSSHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcChhhcCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 4588999999999886 4899999999999999999998888887764
No 168
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=43.92 E-value=23 Score=22.35 Aligned_cols=31 Identities=23% Similarity=0.124 Sum_probs=23.9
Q ss_pred HHHhcCCHHHHHHHhcCChhHHHHHHhcChh
Q 043121 125 IFAVEGSVSEAAKLLWLSTGALSRLILSDDS 155 (169)
Q Consensus 125 l~~~~~~~~~aa~~l~~st~~L~k~l~~~~~ 155 (169)
+....++-.+.|+.||+|.+.+++....-|.
T Consensus 6 ~i~~~~tq~~lA~~lGvs~~~Vs~we~~~p~ 36 (61)
T 1rzs_A 6 VIDHFGTQRAVAKALGISDAAVSQWKEVIPE 36 (61)
T ss_dssp HHHHHSSHHHHHHHHTCCHHHHHHCCSBCCH
T ss_pred HHHHcCCHHHHHHHhCCCHHHHHHHHhhCCH
Confidence 3345568899999999999999998744444
No 169
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=43.75 E-value=43 Score=21.76 Aligned_cols=33 Identities=24% Similarity=0.154 Sum_probs=25.3
Q ss_pred HHHHHHHHH-hcCCHHHHHHHhcCChhHHHHHHh
Q 043121 119 QALLDLIFA-VEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 119 ~~~lD~l~~-~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
..+|..|.. ..-++++.|+.+++|.+.+.+.|.
T Consensus 23 ~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~ 56 (109)
T 1sfx_A 23 VRIYSLLLERGGMRVSEIARELDLSARFVRDRLK 56 (109)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 445666654 445789999999999999998775
No 170
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=43.65 E-value=44 Score=20.37 Aligned_cols=35 Identities=9% Similarity=-0.106 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHhc--CChhHHHHHHhcC
Q 043121 119 QALLDLIFAVEGSVSEAAKLLW--LSTGALSRLILSD 153 (169)
Q Consensus 119 ~~~lD~l~~~~~~~~~aa~~l~--~st~~L~k~l~~~ 153 (169)
..+-......+.+.++.|+.+| +|++.+.++....
T Consensus 11 ~~l~~~r~~~glsq~~lA~~~g~~is~~~i~~~e~g~ 47 (71)
T 2ewt_A 11 AKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERGD 47 (71)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCcCCHHHHHHHHCCC
Confidence 3455667788999999999999 9999999998753
No 171
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=43.62 E-value=26 Score=25.61 Aligned_cols=49 Identities=12% Similarity=0.037 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHHh
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNEL 163 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~~ 163 (169)
-.++...++++...+++ +.++|+..|+|.+.|-+-+.+-..++.++=+.
T Consensus 31 ~~Il~aa~~lf~~~G~~~~tv~~IA~~agvs~~t~Y~~F~sK~~Ll~~~~~~ 82 (215)
T 2qko_A 31 AALVNAAIEVLAREGARGLTFRAVDVEANVPKGTASNYFPSRDDLFDQVGKR 82 (215)
T ss_dssp HHHHHHHHHHHHHTCTTTCCHHHHHHHSSSTTTCHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhccHHHHHHHcCCCcchHHHhCCCHHHHHHHHHHH
Confidence 44889999999998864 99999999999999999999888888776543
No 172
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=43.41 E-value=28 Score=25.40 Aligned_cols=47 Identities=17% Similarity=-0.009 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
.++....+++.+.++ ++.++|+..|+|++.+-+-+.+-..++.+|-+
T Consensus 16 ~Il~aA~~l~~e~G~~~~s~~~IA~~agvs~~t~Y~hF~~Ke~Ll~al~~ 65 (198)
T 3cjd_A 16 KLIDLAEAQIEAEGLASLRARELARQADCAVGAIYTHFQDLNALTLEVNG 65 (198)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChhhcCHHHHHHHhCCCccHHHHHhCCHHHHHHHHHH
Confidence 478889999998776 59999999999999999999888888776643
No 173
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=43.28 E-value=31 Score=23.38 Aligned_cols=38 Identities=18% Similarity=0.100 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHhc--CCHHHHHHHhcC-ChhHHHHHHhcC
Q 043121 116 LGMQALLDLIFAVE--GSVSEAAKLLWL-STGALSRLILSD 153 (169)
Q Consensus 116 ~~l~~~lD~l~~~~--~~~~~aa~~l~~-st~~L~k~l~~~ 153 (169)
.=|..+..+|...+ .+++++|..+|+ +.+.+++.+++.
T Consensus 54 ~Rl~~A~~lL~~~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~ 94 (108)
T 3mn2_A 54 VRLQHAHNLLSDGATPTTVTAAALSCGFSNLGHFARDYRDM 94 (108)
T ss_dssp HHHHHHHHHHHSSSSCCCHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34777888888877 499999999998 577888888764
No 174
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=43.25 E-value=29 Score=25.49 Aligned_cols=47 Identities=17% Similarity=0.111 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHH
Q 043121 115 SLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVN 161 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n 161 (169)
-..+...++++...++ ++.++|+..|+|.+.|-+-+.+-..++.+|=
T Consensus 11 ~~Il~aA~~lf~~~Gy~~~s~~~IA~~AGvs~gt~Y~yF~sKe~L~~~v~ 60 (206)
T 1vi0_A 11 MQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLF 60 (206)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHH
Confidence 3578999999999876 4999999999999999999988777776653
No 175
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=43.18 E-value=26 Score=24.58 Aligned_cols=46 Identities=11% Similarity=0.012 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHh-cChhHHHHH
Q 043121 115 SLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLIL-SDDSHQIAV 160 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~-~~~~~~~~~ 160 (169)
-..+...++++...++ ++.+.|+..|+|++.|-+-+. +-..++..+
T Consensus 9 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~sK~~L~~~~ 58 (191)
T 1sgm_A 9 EKILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYHFFPNGKEELAIEA 58 (191)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHHHHSTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccccCHHHHHHHHCCCchhHHHHccccHHHHHHHH
Confidence 3478899999999887 499999999999999999998 366666554
No 176
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=43.11 E-value=25 Score=24.86 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
..+...++++...+++ +.+.|+..|+|++.|-+-+.+-..++.++=+
T Consensus 11 ~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~ 60 (199)
T 3qbm_A 11 RVVAQAAALFNVSGYAGTAISDIMAATGLEKGGIYRHFESKEQLALAAFD 60 (199)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcCCHHHHHHHhCCCccHHHHhCCCHHHHHHHHHH
Confidence 3688899999998865 8999999999999999988887777766543
No 177
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=43.08 E-value=39 Score=23.90 Aligned_cols=49 Identities=18% Similarity=0.055 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHHhcC--CHHHHHHHhcCChhHHHHHHhcChhHHHHHHHh
Q 043121 115 SLGMQALLDLIFAVEG--SVSEAAKLLWLSTGALSRLILSDDSHQIAVNEL 163 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~--~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~~ 163 (169)
-..+...++++...++ ++.+.|+..|+|.+.|-+-+.+-..++.++=+.
T Consensus 12 ~~Il~aA~~lf~~~G~~~t~~~IA~~aGvs~~tly~~F~sK~~L~~~~~~~ 62 (190)
T 3jsj_A 12 ERLLEAAAALTYRDGVGIGVEALCKAAGVSKRSMYQLFESKDELLAASLKE 62 (190)
T ss_dssp HHHHHHHHHHHHHHCTTCCHHHHHHHHTCCHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 4588999999999887 578899999999999999999888888776543
No 178
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=42.91 E-value=51 Score=24.17 Aligned_cols=49 Identities=8% Similarity=0.080 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhcC-ChhHHHHHHhcChhHHHHHHHhhhh
Q 043121 117 GMQALLDLIFAVEGSVSEAAKLLWL-STGALSRLILSDDSHQIAVNELRTS 166 (169)
Q Consensus 117 ~l~~~lD~l~~~~~~~~~aa~~l~~-st~~L~k~l~~~~~~~~~~n~~R~~ 166 (169)
....+++.| +.+.++..++...|+ |.+-|-+-+..+|.....+-..|..
T Consensus 17 ~~e~I~~~i-~~G~sl~~i~~~~~~ps~~T~~~W~~~~~ef~e~~~~Ar~~ 66 (140)
T 4dyq_A 17 VADDICSLL-SSGESLLKVCKRPGMPDKSTVFRWLAKHEDFRDKYAKATEA 66 (140)
T ss_dssp HHHHHHHHH-HTTCCHHHHHTSTTCCCHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HCCCcHHHHHhcCCCCCHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 455677777 468999999999999 9999999999999998888776653
No 179
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=42.49 E-value=21 Score=27.17 Aligned_cols=49 Identities=14% Similarity=-0.012 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHHh
Q 043121 115 SLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNEL 163 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~~ 163 (169)
..++...++++...++ ++.++|+..|+|.+.|-+-+.+-..++.+|=+.
T Consensus 46 ~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~~F~sK~~L~~~v~~~ 97 (255)
T 3g1o_A 46 LAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDR 97 (255)
T ss_dssp HHHHHHHHHHHTTSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 3589999999999876 499999999999999999999888888776543
No 180
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=42.35 E-value=20 Score=25.21 Aligned_cols=47 Identities=19% Similarity=-0.002 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
..+...++++...++ ++.+.|+..|+|.+.|-+-+.+-..++.++=+
T Consensus 12 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 61 (195)
T 3pas_A 12 AFLEATVREVADHGFSATSVGKIAKAAGLSPATLYIYYEDKEQLLLATFY 61 (195)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcChHhcCHHHHHHHhCCCchHHHHHcCCHHHHHHHHHH
Confidence 367888888888775 48999999999999999999988888776643
No 181
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=42.32 E-value=26 Score=25.73 Aligned_cols=47 Identities=9% Similarity=-0.096 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHH
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVN 161 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n 161 (169)
-..+...++++...|++ +.++|+..|+|.+.|-+-+.+-..++.+|=
T Consensus 14 ~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~~F~sKe~L~~av~ 63 (219)
T 2w53_A 14 EGILDAAEACFHEHGVARTTLEMIGARAGYTRGAVYWHFKNKSEVLAAIV 63 (219)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchHHhhcCCCHHHHHHHHH
Confidence 45899999999999875 899999999999999988887777776553
No 182
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=42.31 E-value=15 Score=24.17 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.7
Q ss_pred CHHHHHHHhcCChhHHHHHHhcCh
Q 043121 131 SVSEAAKLLWLSTGALSRLILSDD 154 (169)
Q Consensus 131 ~~~~aa~~l~~st~~L~k~l~~~~ 154 (169)
.+++.|+.+|+|.+-++++|...+
T Consensus 11 t~~diA~~aGVS~sTVSr~ln~~~ 34 (67)
T 2l8n_A 11 TMKDVALKAKVSTATVSRALMNPD 34 (67)
T ss_dssp CHHHHHHHTTCCHHHHHHTTTCCC
T ss_pred CHHHHHHHHCCCHHHHHHHHcCCC
Confidence 578999999999999999998765
No 183
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=42.23 E-value=49 Score=22.65 Aligned_cols=32 Identities=28% Similarity=0.233 Sum_probs=24.8
Q ss_pred HHHHHHHHh-cCCHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIFAV-EGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~~~-~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+|..|... +-.+++.|+.+++|.+.+++.|.
T Consensus 38 ~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~ 70 (138)
T 1jgs_A 38 KVLCSIRCAACITPVELKKVLSVDLGALTRMLD 70 (138)
T ss_dssp HHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHH
Confidence 455666553 34789999999999999998775
No 184
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=42.20 E-value=5.3 Score=31.52 Aligned_cols=25 Identities=32% Similarity=0.298 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHhcCChhHHHHHHhc
Q 043121 128 VEGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 128 ~~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
-.|+++.||+.|++|.+++++-|+.
T Consensus 27 ~~gs~t~AA~~L~isq~avS~~I~~ 51 (315)
T 1uth_A 27 LDRSVSTAGEKLGLTQPAVSNSLKR 51 (315)
T ss_dssp -------------------------
T ss_pred HcCCHHHHHHHhCCCHHHHHHHHHH
Confidence 3578999999999999999988764
No 185
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=42.13 E-value=24 Score=25.08 Aligned_cols=49 Identities=10% Similarity=-0.053 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHHh
Q 043121 115 SLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNEL 163 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~~ 163 (169)
-..+...++++...++ ++.+.|+..|+|.+.|-+-+.+-..++.++-+.
T Consensus 17 ~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~ 68 (191)
T 4aci_A 17 QEILEGARRCFAEHGYEGATVRRLEEATGKSRGAIFHHFGDKENLFLALARE 68 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHHCCCchHHHHHCCCHHHHHHHHHHH
Confidence 4578899999998875 589999999999999999999888888776543
No 186
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=42.00 E-value=27 Score=24.29 Aligned_cols=44 Identities=18% Similarity=0.010 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHhcC-ChhHHHHHHhcC----hhHHHH
Q 043121 116 LGMQALLDLIFAVEGSVSEAAKLLWL-STGALSRLILSD----DSHQIA 159 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~~~~~aa~~l~~-st~~L~k~l~~~----~~~~~~ 159 (169)
.-|..+..+|..-+.+++++|..+|+ +.+.+++.+++. |..++.
T Consensus 58 ~Rl~~A~~lL~~~~~si~eIA~~~Gf~~~s~F~r~Fk~~~G~tP~~yr~ 106 (120)
T 3mkl_A 58 CRMQRALQLIVIHGFSIKRVAVSCGYHSVSYFIYVFRNYYGMTPTEYQE 106 (120)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCCCCHHHHHHHHHHHHCcCHHHHHH
Confidence 34777888887788999999999997 477888887754 555543
No 187
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=41.95 E-value=16 Score=28.80 Aligned_cols=41 Identities=20% Similarity=0.039 Sum_probs=33.1
Q ss_pred HhcCCHHHHHHHhcCChhHHHHHHhcC--hhHHHHHHHhhhhc
Q 043121 127 AVEGSVSEAAKLLWLSTGALSRLILSD--DSHQIAVNELRTSK 167 (169)
Q Consensus 127 ~~~~~~~~aa~~l~~st~~L~k~l~~~--~~~~~~~n~~R~~~ 167 (169)
....++.+.|+.+|+|+..|.++++.. -+....+++.|..+
T Consensus 17 ~~~~~~~~la~~~~~s~~~l~r~f~~~~g~s~~~~~~~~Rl~~ 59 (292)
T 1d5y_A 17 DQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 59 (292)
T ss_dssp SSSCCCHHHHTTTSSCHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456789999999999999999999875 56677777777554
No 188
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=41.83 E-value=21 Score=25.90 Aligned_cols=47 Identities=19% Similarity=0.159 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
..+...++++...++ ++.+.|+..|+|.+.|-+-+.+-..++.+|=+
T Consensus 15 ~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~Y~~F~sK~~L~~~v~~ 64 (212)
T 2ras_A 15 RLVDVAQAIVEERGGAGLTLSELAARAGISQANLSRYFETREDLMEAIAD 64 (212)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 478889999999876 49999999999999999988888877776643
No 189
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=41.79 E-value=21 Score=25.23 Aligned_cols=47 Identities=19% Similarity=0.125 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
..+...++++...++ ++.+.|+..|+|++.|-+-+.+-..++.++=+
T Consensus 11 ~Il~aA~~l~~~~G~~~~s~~~IA~~agvs~~tly~~F~sK~~L~~a~~~ 60 (180)
T 2fd5_A 11 RILGAATQALLERGAVEPSVGEVMGAAGLTVGGFYAHFQSKDALMLEAFE 60 (180)
T ss_dssp HHHHHHHHHHHHHTTTSCCHHHHHHHTTCCGGGGGGTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCCccHHHHHCCCHHHHHHHHHH
Confidence 468889999999887 59999999999999999888887777766543
No 190
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, strept coelicolor, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=41.77 E-value=30 Score=26.16 Aligned_cols=47 Identities=23% Similarity=0.239 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
..+...++++...+. ++.+.|+.+|+|++.|-+-+.+-..++.++=+
T Consensus 6 ~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~hf~~K~~Ll~~~~~ 55 (209)
T 3bqy_A 6 RTVQTALDLLNESGLDTLTMRRLAQAMDVQAGALYRYFAAKQDLLTAMAE 55 (209)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcccCCHHHHHHHhCCCcchHHhhcCCHHHHHHHHHH
Confidence 467888888888764 58999999999999999999988888877644
No 191
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=41.70 E-value=35 Score=23.35 Aligned_cols=32 Identities=9% Similarity=0.073 Sum_probs=24.7
Q ss_pred HHHHHHHHh-cCCHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIFAV-EGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~~~-~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+|..|... +..+++.|+.++++.+.+++.|.
T Consensus 42 ~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~ 74 (140)
T 2nnn_A 42 AALVRLGETGPCPQNQLGRLTAMDAATIKGVVE 74 (140)
T ss_dssp HHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 355555543 45789999999999999998875
No 192
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=41.42 E-value=20 Score=26.71 Aligned_cols=49 Identities=16% Similarity=-0.054 Sum_probs=41.9
Q ss_pred chhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 114 FSLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 114 f~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
.-.++...++++...++ ++.++|+..|+|.+.|-+-+.+-..++.++=+
T Consensus 32 r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F~sK~~L~~a~~~ 83 (226)
T 2pz9_A 32 RQRIVAAAKEEFARHGIAGARVDRIAKQARTSKERVYAYFRSKEALYAHVAE 83 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCcHHHHHHHHCCChHHHHHHcCCHHHHHHHHHH
Confidence 35689999999999865 59999999999999999999988888776644
No 193
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=41.42 E-value=59 Score=23.08 Aligned_cols=45 Identities=20% Similarity=0.033 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHH-HHH
Q 043121 116 LGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQ-IAV 160 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~-~~~ 160 (169)
..+...++++...+++ +.+.|+..|+|.+.|-+-+.+-..++ ..+
T Consensus 7 ~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~t~Y~~F~sK~~L~~~~~ 55 (190)
T 3vpr_A 7 RILEEAAKLFTEKGYEATSVQDLAQALGLSKAALYHHFGSKEEILYEIS 55 (190)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 4678899999999875 89999999999999999998888877 443
No 194
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=41.26 E-value=20 Score=25.44 Aligned_cols=32 Identities=16% Similarity=0.115 Sum_probs=24.8
Q ss_pred HHHHHHH-HhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIF-AVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~-~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+|..|. ..+..+++.|+.||+|.+.+++.|.
T Consensus 46 ~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~ 78 (122)
T 1u2w_A 46 KITYALCQDEELCVCDIANILGVTIANASHHLR 78 (122)
T ss_dssp HHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 3566665 3445789999999999999998765
No 195
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=41.25 E-value=39 Score=22.69 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhc
Q 043121 119 QALLDLIFAVEGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 119 ~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
..++..+ ..+.++.++|+.||+|.+-+.+.++.
T Consensus 24 ~~i~~~~-~~g~s~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 24 LKIVEMA-ADGIRPCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp HHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3445544 46889999999999999999988865
No 196
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=41.24 E-value=30 Score=23.25 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=22.8
Q ss_pred HHHHHhcCCHHHHHHHhcCChhHHHHHHhc
Q 043121 123 DLIFAVEGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 123 D~l~~~~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
|.+... |+.+..|++||+|++++.+-+..
T Consensus 5 ~ai~~~-G~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 5 ELVRHF-GDVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHHH-SSHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHH-CCHHHHHHHHCCCHHHHHHHHhC
Confidence 334444 45899999999999999999764
No 197
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=41.12 E-value=41 Score=23.82 Aligned_cols=37 Identities=24% Similarity=0.205 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 115 SLGMQALLDLIFAVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
|+--..++-+....+.+.+++|+.||+|.+.+-+.+.
T Consensus 27 ~~~~r~vl~l~~~~g~s~~EIA~~lgiS~~tV~~~l~ 63 (113)
T 1xsv_A 27 TNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIR 63 (113)
T ss_dssp CHHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4445567777778899999999999999998775543
No 198
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=41.00 E-value=31 Score=26.08 Aligned_cols=50 Identities=14% Similarity=-0.029 Sum_probs=43.3
Q ss_pred chhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHHh
Q 043121 114 FSLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNEL 163 (169)
Q Consensus 114 f~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~~ 163 (169)
.-.++...++++...++ ++.++|+..|+|.+.|-+-+.+-..++.+|=+.
T Consensus 20 r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~~F~sKe~Ll~av~~~ 72 (251)
T 3npi_A 20 TDTVLDIALSLFSELGFSDAKLEAIAKKSGMSKRMIHYHFGDKRGLYICCLEE 72 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCccccCHHHHHHHHCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 35689999999999876 699999999999999999999988888877554
No 199
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=40.76 E-value=16 Score=25.62 Aligned_cols=37 Identities=5% Similarity=0.039 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 115 SLGMQALLDLIFAVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
......+|+.|...+-++++.|+.||+|.+++-+.|.
T Consensus 16 ~~~~~~IL~lL~~~g~sa~eLAk~LgiSk~aVr~~L~ 52 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEGATAAQLTRQLNMEKREVNKALY 52 (82)
T ss_dssp HHHHHHHHHHHSSSTEEHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3455667788887667788999999999998876664
No 200
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=40.64 E-value=43 Score=23.28 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=22.3
Q ss_pred HHHHHHHHHh-cCCHHHHHHHhcCChhHHHHHHh
Q 043121 119 QALLDLIFAV-EGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 119 ~~~lD~l~~~-~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
-.+|..|... +-.+++.|+.+++|++.++++|.
T Consensus 40 ~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~ 73 (142)
T 3ech_A 40 VHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIR 73 (142)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHH
T ss_pred HHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHH
Confidence 3455566554 45789999999999999998775
No 201
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=40.61 E-value=41 Score=23.70 Aligned_cols=36 Identities=11% Similarity=0.073 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhcCC-hhHHHHHHhc
Q 043121 117 GMQALLDLIFAVEGSVSEAAKLLWLS-TGALSRLILS 152 (169)
Q Consensus 117 ~l~~~lD~l~~~~~~~~~aa~~l~~s-t~~L~k~l~~ 152 (169)
-|..+.++|...+.+++++|..+|++ .+.+++.+++
T Consensus 64 Rl~~A~~lL~~~~~si~~IA~~~Gf~~~s~F~r~Fk~ 100 (129)
T 1bl0_A 64 KMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKN 100 (129)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCCCCHHHHHHHHHH
Confidence 47788899988899999999999975 6777777765
No 202
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=40.40 E-value=19 Score=25.87 Aligned_cols=45 Identities=16% Similarity=0.036 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHH
Q 043121 115 SLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIA 159 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~ 159 (169)
-.++...++++...++ ++.+.|+..|+|.+.|-+-+.+-..++.+
T Consensus 10 ~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~Ll~~ 57 (195)
T 2dg7_A 10 QRLKRAALELYSEHGYDNVTVTDIAERAGLTRRSYFRYFPDKREVLFG 57 (195)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHHHHCSSTTGGGTT
T ss_pred HHHHHHHHHHHHhcCccccCHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 4578899999998875 48999999999999999999887777654
No 203
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=40.37 E-value=39 Score=21.32 Aligned_cols=32 Identities=13% Similarity=-0.042 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhcCChhHHHHHH
Q 043121 118 MQALLDLIFAVEGSVSEAAKLLWLSTGALSRLI 150 (169)
Q Consensus 118 l~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l 150 (169)
-..++..+ ..+.+.+++|+.||+|.+.+-+.+
T Consensus 21 e~~vl~l~-~~g~s~~eIA~~l~is~~tV~~~~ 52 (79)
T 1x3u_A 21 ERQVLSAV-VAGLPNKSIAYDLDISPRTVEVHR 52 (79)
T ss_dssp HHHHHHHH-TTTCCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 34455554 678899999999999998776544
No 204
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=40.35 E-value=28 Score=26.15 Aligned_cols=48 Identities=19% Similarity=0.062 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 115 SLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
..++...++++...++ ++.+.|+..|+|++.|-+-+.+-..++.+|-+
T Consensus 19 ~~il~aA~~l~~~~G~~~~s~~~IA~~agvs~~t~Y~~F~~K~~L~~a~~~ 69 (216)
T 2oi8_A 19 AEIKDHAWEQIATAGASALSLNAIAKRMGMSGPALYRYFDGRDELITELIR 69 (216)
T ss_dssp HHHHHHHHHHHHHHCTTSCCHHHHHHHTTCCHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 4578999999999876 49999999999999999999888888766543
No 205
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=40.21 E-value=34 Score=22.43 Aligned_cols=37 Identities=11% Similarity=-0.019 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 117 GMQALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 117 ~l~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
+-..+-......+++-.+.|+.+|+|.+.++++-...
T Consensus 15 ~g~~l~~~R~~~gltq~elA~~~gis~~~is~~E~G~ 51 (86)
T 3eus_A 15 LCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRE 51 (86)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCC
Confidence 4455677788899999999999999999999987654
No 206
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=40.20 E-value=29 Score=23.34 Aligned_cols=32 Identities=22% Similarity=0.131 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIFAVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+|..|....-.+.+.|+.+|+|.+.+++-|+
T Consensus 27 ~Il~~L~~~~~~~~ela~~l~is~~tvs~~L~ 58 (102)
T 3pqk_A 27 MLVCTLVEGEFSVGELEQQIGIGQPTLSQQLG 58 (102)
T ss_dssp HHHHHHHTCCBCHHHHHHHHTCCTTHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 35666655556799999999999998887654
No 207
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=40.05 E-value=30 Score=25.18 Aligned_cols=47 Identities=11% Similarity=-0.124 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHH
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVN 161 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n 161 (169)
-..+...++++...+++ +.++|+..|+|.+.|-+-+.+-..++.++=
T Consensus 12 ~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~tlY~~F~sKe~L~~a~~ 61 (203)
T 3cdl_A 12 ESIVQAAIAEFGDRGFEITSMDRIAARAEVSKRTVYNHFPSKEELFAEML 61 (203)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHTTSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHH
Confidence 34788999999998875 899999999999999998888777776653
No 208
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=39.96 E-value=30 Score=23.82 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=27.0
Q ss_pred chhHHHHHHHHHHH--hcCCHHHHHHHhcCChhHHHHHHh
Q 043121 114 FSLGMQALLDLIFA--VEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 114 f~~~l~~~lD~l~~--~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
..+....+|..|.. .+-.+++.|+.+|+|++.++++|.
T Consensus 24 l~~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~ 63 (152)
T 1ku9_A 24 LNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLK 63 (152)
T ss_dssp CCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CChhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 33444556666642 234589999999999999998775
No 209
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=39.92 E-value=48 Score=21.41 Aligned_cols=29 Identities=10% Similarity=-0.037 Sum_probs=25.9
Q ss_pred HHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 125 IFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 125 l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
....+++..+.|+.+|+|.+.+.++....
T Consensus 26 R~~~glsq~~lA~~~gis~~~is~~e~g~ 54 (92)
T 1lmb_3 26 KNELGLSQESVADKMGMGQSGVGALFNGI 54 (92)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcCC
Confidence 37889999999999999999999998753
No 210
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=39.92 E-value=23 Score=25.36 Aligned_cols=46 Identities=24% Similarity=0.106 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHH
Q 043121 116 LGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVN 161 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n 161 (169)
..+...++++...|++ +.++|+..|+|.+.|-+-+.+-..++.++=
T Consensus 22 ~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F~sKe~L~~~~~ 70 (212)
T 3loc_A 22 AILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVL 70 (212)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHhhhCCCHHHHHHHHH
Confidence 4788899999988765 899999999999999999988877777653
No 211
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=39.88 E-value=41 Score=24.40 Aligned_cols=33 Identities=18% Similarity=0.089 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 119 QALLDLIFAVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 119 ~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
..++-+....+.+++++|+.||+|.+.+-+.+.
T Consensus 146 r~vl~l~~~~g~s~~EIA~~lgis~~tV~~~l~ 178 (194)
T 1or7_A 146 RMAITLRELDGLSYEEIAAIMDCPVGTVRSRIF 178 (194)
T ss_dssp HHHHHHHHTTCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHhHHHHHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 445555566788999999999999998876554
No 212
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=39.82 E-value=30 Score=25.16 Aligned_cols=45 Identities=9% Similarity=-0.045 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHH
Q 043121 116 LGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAV 160 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~ 160 (169)
..+....+++...|++ +.++|+..|+|.+.|-+-+.+-..++.+|
T Consensus 16 ~Il~aA~~lf~~~Gy~~ts~~~IA~~agvs~gtlY~yF~sKe~L~~~v 63 (205)
T 1rkt_A 16 EILEAAKTVFKRKGFELTTMKDVVEESGFSRGGVYLYFSSTEEMFRRI 63 (205)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHHCCCcchhhhhCCCHHHHHHHH
Confidence 4788999999998875 89999999999999998887777776655
No 213
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=39.82 E-value=35 Score=24.74 Aligned_cols=47 Identities=19% Similarity=0.094 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
.++...++++...+++ +.+.|+..|+|.+.|-+-+.+-..++.++=+
T Consensus 7 ~Il~aA~~lf~~~G~~~~s~~~IA~~Agvs~~t~Y~~F~sK~~L~~a~~~ 56 (212)
T 3rh2_A 7 KIIQASLELFNEHGERTITTNHIAAHLDISPGNLYYHFRNKEDIIRCIFD 56 (212)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHH
Confidence 4678889999888754 8999999999999999999888888776643
No 214
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=39.81 E-value=43 Score=23.23 Aligned_cols=33 Identities=27% Similarity=0.098 Sum_probs=25.1
Q ss_pred HHHHHHHHHhc-CCHHHHHHHhcCChhHHHHHHh
Q 043121 119 QALLDLIFAVE-GSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 119 ~~~lD~l~~~~-~~~~~aa~~l~~st~~L~k~l~ 151 (169)
-.+|..|...+ -.+++.|+.++++++.++++|.
T Consensus 40 ~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~ 73 (143)
T 3oop_A 40 WSVLEGIEANEPISQKEIALWTKKDTPTVNRIVD 73 (143)
T ss_dssp HHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHH
Confidence 34555665544 3689999999999999998875
No 215
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=39.59 E-value=58 Score=22.47 Aligned_cols=32 Identities=13% Similarity=0.048 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhc
Q 043121 120 ALLDLIFAVEGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 120 ~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
.++.++ ..+.++.++|+.||+|.+.+.+.+..
T Consensus 14 ~i~~~~-~~G~s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 14 QLDVMK-LLNVSLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp HHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred HHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHc
Confidence 344444 56889999999999999999998875
No 216
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=39.58 E-value=37 Score=24.21 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhc
Q 043121 119 QALLDLIFAVEGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 119 ~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
..++..+ ..+.++.++|+.||+|.+.+.+.++.
T Consensus 39 ~~iv~~~-~~G~s~~~iA~~lgis~~TV~rw~~~ 71 (149)
T 1k78_A 39 QRIVELA-HQGVRPCDISRQLRVSHGCVSKILGR 71 (149)
T ss_dssp HHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4455554 46889999999999999999998875
No 217
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=39.52 E-value=24 Score=23.02 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=23.7
Q ss_pred HHHHHH-HhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 121 LLDLIF-AVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 121 ~lD~l~-~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
+|..|. .....+++.|+.+++|.+.+++.|.
T Consensus 21 iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~ 52 (100)
T 1ub9_A 21 IMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIR 52 (100)
T ss_dssp HHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 455554 3456789999999999999998775
No 218
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=39.38 E-value=50 Score=23.74 Aligned_cols=44 Identities=14% Similarity=0.031 Sum_probs=32.6
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcChhH
Q 043121 113 KFSLGMQALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSDDSH 156 (169)
Q Consensus 113 ~f~~~l~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~~~~ 156 (169)
.+...+..+--+.-.-+..-+++|+.||+|...++++|..-...
T Consensus 18 ~~~~~~~~~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~ 61 (101)
T 2w7n_A 18 EVGQQTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVHRVWAA 61 (101)
T ss_dssp CCCHHHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34444555555556667778999999999999999999865444
No 219
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=39.09 E-value=24 Score=24.78 Aligned_cols=32 Identities=16% Similarity=0.056 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIFAVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+|..|......+.+.|+.||+|.+.+++.|+
T Consensus 25 ~IL~~L~~~~~~~~eLa~~lgis~stvs~~L~ 56 (118)
T 2jsc_A 25 RILVALLDGVCYPGQLAAHLGLTRSNVSNHLS 56 (118)
T ss_dssp HHHHHHHTTCCSTTTHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 45666665566789999999999999988765
No 220
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=39.01 E-value=49 Score=23.92 Aligned_cols=47 Identities=19% Similarity=0.162 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHhcC--CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAVEG--SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~--~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
..+...++++...++ ++.+.|+..|+|.+.|-+-+.+-..++.++=+
T Consensus 17 ~Il~aA~~lf~~~G~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~ 65 (196)
T 2qwt_A 17 RVLEVAYDTFAAEGLGVPMDEIARRAGVGAGTVYRHFPTKQALVVAVAE 65 (196)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHH
Confidence 478888999988774 58889999999999999999888888776643
No 221
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=38.95 E-value=39 Score=24.84 Aligned_cols=48 Identities=23% Similarity=0.077 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 115 SLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
-..+...++++...++ ++.+.|+..|+|.+.|-.-+.+-..++.++=+
T Consensus 12 ~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~gtlY~yF~sKe~L~~a~~~ 62 (209)
T 2gfn_A 12 RALADAVLALIAREGISAVTTRAVAEESGWSTGVLNHYFGSRHELLLAALR 62 (209)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHSSCHHHHHHHTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHHCCCcchHHhcCCCHHHHHHHHHH
Confidence 3578999999999876 59999999999999999999888888766643
No 222
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=38.95 E-value=35 Score=25.51 Aligned_cols=47 Identities=19% Similarity=0.011 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
.++...++++...++ ++.+.|+..|+|.+.|-+-+.+-..++.++=+
T Consensus 17 ~Il~AA~~l~~~~G~~~~tv~~IA~~agvs~~t~Y~~F~sK~~Ll~~~~~ 66 (231)
T 2qib_A 17 QLIGVALDLFSRRSPDEVSIDEIASAAGISRPLVYHYFPGKLSLYEAALQ 66 (231)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHH
Confidence 478899999999876 58999999999999999999888877766543
No 223
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=38.91 E-value=36 Score=23.55 Aligned_cols=31 Identities=16% Similarity=0.057 Sum_probs=23.9
Q ss_pred HHHHHHHhc-CCHHHHHHHhcCChhHHHHHHh
Q 043121 121 LLDLIFAVE-GSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 121 ~lD~l~~~~-~~~~~aa~~l~~st~~L~k~l~ 151 (169)
+|..|...+ -.+++.|+.|++|.+.+++.|.
T Consensus 34 iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~ 65 (144)
T 1lj9_A 34 YLVRVCENPGIIQEKIAELIKVDRTTAARAIK 65 (144)
T ss_dssp HHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHH
Confidence 555555543 3789999999999999998775
No 224
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=38.75 E-value=32 Score=23.34 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=23.5
Q ss_pred HHHHHhcCCHHHHHHHhcCChhHHHHHHhc
Q 043121 123 DLIFAVEGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 123 D~l~~~~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
.++...+..+++.|+.||+|.+.+++-|+.
T Consensus 35 ~l~~~~~~~~~ela~~l~is~stvs~hL~~ 64 (99)
T 2zkz_A 35 ELYKHKALNVTQIIQILKLPQSTVSQHLCK 64 (99)
T ss_dssp HHHHHSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 444455567999999999999999987653
No 225
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=38.65 E-value=21 Score=22.83 Aligned_cols=23 Identities=9% Similarity=0.027 Sum_probs=19.6
Q ss_pred CHHHHHHHhcCChhHHHHHHhcC
Q 043121 131 SVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 131 ~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
..+++|++||+|+.-|-+.+..-
T Consensus 4 t~~e~a~~LgvS~~Tl~rw~~~G 26 (68)
T 1j9i_A 4 NKKQLADIFGASIRTIQNWQEQG 26 (68)
T ss_dssp EHHHHHHHTTCCHHHHHHHTTTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHCC
Confidence 46789999999999999887653
No 226
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=38.23 E-value=32 Score=25.04 Aligned_cols=46 Identities=20% Similarity=-0.029 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHH
Q 043121 116 LGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVN 161 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n 161 (169)
..+....+++...|+ ++.+.|+..|+|.+.|-+-+.+-..++.++=
T Consensus 18 ~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~tlY~yF~sKe~L~~a~~ 66 (199)
T 3crj_A 18 EIMQATYRALREHGYADLTIQRIADEYGKSTAAVHYYYDTKDDLLAAFL 66 (199)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCChhHHhhhcCCHHHHHHHHH
Confidence 478899999999886 5999999999999999988888777776653
No 227
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=38.21 E-value=21 Score=25.24 Aligned_cols=48 Identities=8% Similarity=-0.026 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 115 SLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
...+...++++...++ ++.+.|+..|+|++.|-+-+.+-..++.++=+
T Consensus 11 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 61 (183)
T 1zk8_A 11 QKIVETAAEIADANGVQEVTLASLAQTLGVRSPSLYNHVKGLQDVRKNLGI 61 (183)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccCHHHHHHHcCCCchHHHHHcCCHHHHHHHHHH
Confidence 4588999999999875 48999999999999999888877777766543
No 228
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=38.01 E-value=24 Score=25.38 Aligned_cols=47 Identities=15% Similarity=-0.012 Sum_probs=39.7
Q ss_pred chhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHH
Q 043121 114 FSLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAV 160 (169)
Q Consensus 114 f~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~ 160 (169)
.-.++...++++...+++ +.+.|+..|+|.+.|-+-+.+-..++.++
T Consensus 19 r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~ 68 (207)
T 2rae_A 19 QDRISTVGIELFTEQGFDATSVDEVAEASGIARRTLFRYFPSKNAIPWGD 68 (207)
T ss_dssp HHHHHHHHHHHHHHHCTTTSCHHHHHHHTTSCHHHHHHHCSSTTTGGGCS
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcchHhhhCCCHHHHHHHH
Confidence 355899999999998874 89999999999999999998877776443
No 229
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=38.00 E-value=25 Score=25.12 Aligned_cols=47 Identities=17% Similarity=0.012 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
.++...++++...++ ++.+.|+..|+|.+.|-+-+.+-..++.+|=+
T Consensus 18 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 67 (215)
T 3e7q_A 18 LLIEATLACLKRHGFQGASVRKICAEAGVSVGLINHHYDGKDALVAEAYL 67 (215)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 478889999988776 58999999999999999999888888776644
No 230
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=37.90 E-value=21 Score=24.75 Aligned_cols=31 Identities=23% Similarity=0.169 Sum_probs=22.9
Q ss_pred HHHHHHHhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 121 LLDLIFAVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 121 ~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
+|..|...+..+++.|+.||+|.+.+++.|+
T Consensus 30 IL~~L~~~~~s~~eLa~~lgis~stvs~~L~ 60 (108)
T 2kko_A 30 ILDLLAQGERAVEAIATATGMNLTTASANLQ 60 (108)
T ss_dssp HHHHHTTCCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHcCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 4444544445688999999999999887664
No 231
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=37.77 E-value=41 Score=26.15 Aligned_cols=48 Identities=17% Similarity=-0.019 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 115 SLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
-..+...++++...+. ++.+.|+.+|+|++.|-+-+.+-..++.++=+
T Consensus 9 ~~Il~AA~~l~~~~G~~~~S~r~IA~~aGvs~~tlY~hF~~K~~Ll~~~~~ 59 (234)
T 2opt_A 9 DRIVVTALGILDAEGLDALSMRRLAQELKTGHASLYAHVGNRDELLDLVFD 59 (234)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccccCHHHHHHHHCCChhHHHHHcCCHHHHHHHHHH
Confidence 4578889999998875 68999999999999999999988888877644
No 232
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=37.60 E-value=41 Score=23.56 Aligned_cols=32 Identities=19% Similarity=0.068 Sum_probs=24.6
Q ss_pred HHHHHHHHh-cCCHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIFAV-EGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~~~-~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+|..|... +..+++.|+.+++|.+.+++.|.
T Consensus 41 ~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~ 73 (155)
T 1s3j_A 41 FVLASLKKHGSLKVSEIAERMEVKPSAVTLMAD 73 (155)
T ss_dssp HHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 455556553 34789999999999999998775
No 233
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=37.49 E-value=54 Score=23.40 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=24.8
Q ss_pred HHHHHHHHh-cCCHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIFAV-EGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~~~-~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+|-.|... +-.+++.|+.++++++.++++|.
T Consensus 50 ~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~ 82 (162)
T 3k0l_A 50 TALSVLAAKPNLSNAKLAERSFIKPQSANKILQ 82 (162)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 455556554 34789999999999999998875
No 234
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=37.45 E-value=44 Score=22.32 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCC--HHHHHHHhcCChhHHHHHHhc
Q 043121 119 QALLDLIFAVEGS--VSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 119 ~~~lD~l~~~~~~--~~~aa~~l~~st~~L~k~l~~ 152 (169)
..+||.|-..+|- ++..|+.+|.+...+.++|++
T Consensus 13 ~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~Lrr 48 (59)
T 2xvc_A 13 RELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEA 48 (59)
T ss_dssp HHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHH
Confidence 5789999999985 899999999999999988764
No 235
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=37.35 E-value=25 Score=27.47 Aligned_cols=50 Identities=14% Similarity=0.023 Sum_probs=42.4
Q ss_pred CchhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 113 KFSLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 113 ~f~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
..-..+...++++.+.++ ++.+.|+.+|+|++.|-+-+.+-..++.+|=+
T Consensus 20 tr~~Il~AA~~l~~e~G~~~~S~~~IA~~aGvs~~tlY~hF~sK~~Ll~av~~ 72 (243)
T 2g7l_A 20 SRRWIVDTAVALMRAEGLEKVTMRRLAQELDTGPASLYVYVANTAELHAAVLD 72 (243)
T ss_dssp CHHHHHHHHHHHHHHHCSSSCCHHHHHHHTTSCHHHHTTTCCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCchhcCHHHHHHHHCCChhHHHHHcCCHHHHHHHHHH
Confidence 345689999999999886 48999999999999999999888888777654
No 236
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=37.19 E-value=63 Score=22.39 Aligned_cols=33 Identities=12% Similarity=0.002 Sum_probs=25.3
Q ss_pred HHHHHHHHHhc-CCHHHHHHHhcCChhHHHHHHh
Q 043121 119 QALLDLIFAVE-GSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 119 ~~~lD~l~~~~-~~~~~aa~~l~~st~~L~k~l~ 151 (169)
-.+|..|...+ -.+++.|+.++++.+.++++|.
T Consensus 34 ~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~ 67 (145)
T 3g3z_A 34 FAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCK 67 (145)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 34555665444 5789999999999999998875
No 237
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=37.13 E-value=36 Score=23.44 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=25.8
Q ss_pred HHHHHHHHHh---cCCHHHHHHHhcCChhHHHHHHh
Q 043121 119 QALLDLIFAV---EGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 119 ~~~lD~l~~~---~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
-.+|..|... +-.+++.|+.+++|++.++++|.
T Consensus 34 ~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~ 69 (139)
T 3eco_A 34 GHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLR 69 (139)
T ss_dssp HHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHH
Confidence 3466666665 34689999999999999998875
No 238
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=37.07 E-value=36 Score=23.32 Aligned_cols=32 Identities=3% Similarity=0.044 Sum_probs=24.4
Q ss_pred HHHHHHHHhc-CCHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIFAVE-GSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~~~~-~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+|..|...+ -.+++.|+.+++|.+.+++.|.
T Consensus 40 ~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~ 72 (142)
T 2fbi_A 40 RVIRILRQQGEMESYQLANQACILRPSMTGVLA 72 (142)
T ss_dssp HHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHH
Confidence 3555555533 4789999999999999998775
No 239
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=37.06 E-value=52 Score=22.40 Aligned_cols=33 Identities=21% Similarity=0.184 Sum_probs=25.1
Q ss_pred HHHHHHHHHh-cCCHHHHHHHhcCChhHHHHHHh
Q 043121 119 QALLDLIFAV-EGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 119 ~~~lD~l~~~-~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
-.+|..|... +..+++.|+.+++|.+.+++.|.
T Consensus 32 ~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~ 65 (138)
T 3bpv_A 32 VACLLRIHREPGIKQDELATFFHVDKGTIARTLR 65 (138)
T ss_dssp HHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 3456666553 34789999999999999998775
No 240
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=37.01 E-value=62 Score=22.42 Aligned_cols=32 Identities=16% Similarity=0.286 Sum_probs=24.5
Q ss_pred HHHHHHHHh-cCCHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIFAV-EGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~~~-~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+|..|... +-.+++.|+.|++|.+.+++.|.
T Consensus 46 ~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~ 78 (150)
T 2rdp_A 46 VALQWLLEEGDLTVGELSNKMYLACSTTTDLVD 78 (150)
T ss_dssp HHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHH
Confidence 355555543 34799999999999999998775
No 241
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=36.98 E-value=49 Score=20.64 Aligned_cols=37 Identities=11% Similarity=0.171 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHH----HhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 115 SLGMQALLDLIF----AVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 115 ~~~l~~~lD~l~----~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
|+--+.++-+.. ..+.+.+++|+.||+|.+.+-+.+.
T Consensus 7 ~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ 47 (68)
T 2p7v_B 7 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 47 (68)
T ss_dssp CHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 444556666666 4678899999999999998876543
No 242
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genom protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=36.96 E-value=54 Score=24.58 Aligned_cols=46 Identities=15% Similarity=-0.098 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHH
Q 043121 116 LGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVN 161 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n 161 (169)
.++....+++...++ ++.++|+.-|+|.+.|-+-+.+-..++.+|=
T Consensus 11 ~Il~AA~~lF~e~G~~~ts~~~IA~~AGvs~~tlY~hF~sKe~L~~av~ 59 (235)
T 2fbq_A 11 RILDAAEQLFAEKGFAETSLRLITSKAGVNLAAVNYHFGSKKALIQAVF 59 (235)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 478889999999887 4899999999999999999988777776653
No 243
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=36.94 E-value=40 Score=24.79 Aligned_cols=47 Identities=26% Similarity=0.188 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
..+...++++...+++ +.++|+.-|+|.+.|-+-+.+-..++.++=+
T Consensus 26 ~Il~AA~~lf~e~G~~~~s~~~IA~~AGVsk~tlY~~F~sKe~L~~a~~~ 75 (207)
T 3bjb_A 26 RMLEAAIELATEKELARVQMHEVAKRAGVAIGTLYRYFPSKTHLFVAVMV 75 (207)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHH
Confidence 4789999999998764 8999999999999999999888888876643
No 244
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=36.94 E-value=50 Score=24.59 Aligned_cols=37 Identities=30% Similarity=0.270 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 115 SLGMQALLDLIFAVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
|+--..++-+....+.+.+++|+.||+|.+.+-+.+.
T Consensus 189 ~~~~r~vl~l~~~~g~s~~EIA~~lgis~~~V~~~~~ 225 (239)
T 1rp3_A 189 PEREKLVIQLIFYEELPAKEVAKILETSVSRVSQLKA 225 (239)
T ss_dssp CHHHHHHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHH
Confidence 3444556666667789999999999999999876654
No 245
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=36.86 E-value=55 Score=22.73 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=25.3
Q ss_pred HHHHHHHHHhc-CCHHHHHHHhcCChhHHHHHHh
Q 043121 119 QALLDLIFAVE-GSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 119 ~~~lD~l~~~~-~~~~~aa~~l~~st~~L~k~l~ 151 (169)
-.+|..|...+ -.+++.|+.+++|++.+++.|.
T Consensus 43 ~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~ 76 (148)
T 3nrv_A 43 WRIISVLSSASDCSVQKISDILGLDKAAVSRTVK 76 (148)
T ss_dssp HHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 34566665544 4688999999999999998875
No 246
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=36.84 E-value=29 Score=25.57 Aligned_cols=48 Identities=10% Similarity=0.120 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
-..+...++++...+++ +.++|+..|+|.+.|-+-+.+-..++.+|=+
T Consensus 27 ~~Il~aA~~lf~e~G~~~~s~~~IA~~aGvskgtlY~yF~sKe~L~~a~~~ 77 (214)
T 2oer_A 27 ASILEAAVQVLASEGAQRFTTARVAERAGVSIGSLYQYFPNKAAILFRLQS 77 (214)
T ss_dssp HHHHHHHHHC------CCCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccccHHHHHHHhCCCCchHHHhCCCHHHHHHHHHH
Confidence 45888999999998875 8999999999999999999988888876643
No 247
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=36.83 E-value=47 Score=23.29 Aligned_cols=32 Identities=19% Similarity=0.191 Sum_probs=25.0
Q ss_pred HHHHHHHHhc-C-CHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIFAVE-G-SVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~~~~-~-~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+|-.|...+ + .+++.|+.++++++.++++|.
T Consensus 43 ~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~ 76 (150)
T 3fm5_A 43 SVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVD 76 (150)
T ss_dssp HHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHH
Confidence 3555665443 4 899999999999999998875
No 248
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=36.64 E-value=38 Score=24.04 Aligned_cols=35 Identities=11% Similarity=0.122 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHh
Q 043121 117 GMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 117 ~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~ 151 (169)
.-..+|..|...++ ++++.|+.+++|.+.+.+.|.
T Consensus 27 ~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~ 64 (123)
T 3r0a_A 27 ADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVK 64 (123)
T ss_dssp HHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 34567888887665 799999999999999888775
No 249
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=36.48 E-value=33 Score=24.79 Aligned_cols=32 Identities=28% Similarity=0.285 Sum_probs=23.4
Q ss_pred HHHHHHHhcC------CHHHHHHHhcCChhHHHHHHhc
Q 043121 121 LLDLIFAVEG------SVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 121 ~lD~l~~~~~------~~~~aa~~l~~st~~L~k~l~~ 152 (169)
+|-.|...++ .+++.|+.++++++.++++|..
T Consensus 38 vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~ 75 (148)
T 4fx0_A 38 TLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEV 75 (148)
T ss_dssp HHHHHHC---------CHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 4555555443 6899999999999999998753
No 250
>2y2z_A SIM16, SIMR, putative repressor simreg2; transcription, simocyclinone regulator, TETR-family; 1.95A {Streptomyces antibioticus} PDB: 2y30_A* 2y31_A* 3zql_A
Probab=36.45 E-value=32 Score=27.46 Aligned_cols=50 Identities=10% Similarity=-0.059 Sum_probs=42.3
Q ss_pred CchhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 113 KFSLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 113 ~f~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
..-..+...++++.+.+.+ +.+.|+.+|+|++.|-+-+.+-..++.+|=+
T Consensus 28 tr~~Il~AA~~L~~e~G~~~~Smr~IA~~aGVs~~tlY~hF~~K~~Ll~av~~ 80 (267)
T 2y2z_A 28 SRDQIVRAAVKVADTEGVEAASMRRVAAELGAGTMSLYYYVPTKEDLVELMVD 80 (267)
T ss_dssp CHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHTTCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 3456899999999998764 8999999999999999999888888776644
No 251
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=36.34 E-value=26 Score=26.57 Aligned_cols=51 Identities=20% Similarity=0.077 Sum_probs=42.8
Q ss_pred CchhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHHh
Q 043121 113 KFSLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNEL 163 (169)
Q Consensus 113 ~f~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~~ 163 (169)
..-.++...++++...++ ++.+.|+..|+|++.|-+-+.+-..++.+|-+.
T Consensus 26 tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~~F~~K~~L~~a~~~~ 79 (211)
T 3fiw_A 26 NRETVITEALDLLDEVGLDGVSTRRLAKRLGVEQPSLYWYFRTKRDLLTAMAQA 79 (211)
T ss_dssp CHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHTTCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHH
Confidence 345689999999999885 489999999999999999998888888776543
No 252
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=36.28 E-value=21 Score=27.07 Aligned_cols=46 Identities=13% Similarity=0.052 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHH
Q 043121 116 LGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVN 161 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n 161 (169)
.++...++++...++ ++.++|+..|+|.+.|-+-+.+-..++.+|-
T Consensus 50 ~Il~aA~~lf~~~G~~~~t~~~IA~~aGvs~~t~Y~~F~sKe~Ll~~v~ 98 (245)
T 3aqt_A 50 RLITSARTLMAERGVDNVGIAEITEGANIGTGTFYNYFPDREQLLQAVA 98 (245)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHTTSCGGGGGGTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccCcHHHHHHHhCCChHHHHHHcCCHHHHHHHHH
Confidence 478889999999875 5899999999999999988888777776654
No 253
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=36.19 E-value=22 Score=25.52 Aligned_cols=47 Identities=11% Similarity=0.079 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHH
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVN 161 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n 161 (169)
-..+....+++...|+. +.++|+..|+|.+.|-+-+.+-..++.+|=
T Consensus 10 e~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F~sKe~L~~a~~ 59 (178)
T 4hku_A 10 EIILNMAEKIIYEKGMEKTTLYDIASNLNVTHAALYKHYRNKEDLFQKLA 59 (178)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHTTSCGGGGGGTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccHHHHHHHhCcCHhHHHHHCCCHHHHHHHHH
Confidence 35788899999998874 899999999999999998888777776653
No 254
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=36.03 E-value=69 Score=20.22 Aligned_cols=38 Identities=11% Similarity=0.088 Sum_probs=30.0
Q ss_pred chhHHHHHHHHHHH----hcCCHHHHHHHhcCChhHHHHHHh
Q 043121 114 FSLGMQALLDLIFA----VEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 114 f~~~l~~~lD~l~~----~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.|+--..++-.... .+.+.+++|+.||+|.+.+-+.+.
T Consensus 11 L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ 52 (73)
T 1ku3_A 11 LSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIEN 52 (73)
T ss_dssp SCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 45566677777776 688999999999999998876543
No 255
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=36.00 E-value=29 Score=25.85 Aligned_cols=48 Identities=4% Similarity=-0.005 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
-.++...++++...+++ +.+.|+..|+|.+.|-+-+.+-..++.++-+
T Consensus 33 ~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~F~sKe~Ll~~~~~ 83 (230)
T 2iai_A 33 ETLLSVAVQVFIERGYDGTSMEHLSKAAGISKSSIYHHVTGKEELLRRAVS 83 (230)
T ss_dssp SCHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccccCHHHHHHHHCCChhHHHHhCCCHHHHHHHHHH
Confidence 44899999999999875 9999999999999999988887777776644
No 256
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=35.84 E-value=56 Score=21.25 Aligned_cols=35 Identities=3% Similarity=-0.169 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhc
Q 043121 118 MQALLDLIFAVEGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 118 l~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
-..+-..+...+.+..+.|+.+|+|.+.+.++...
T Consensus 15 ~~~l~~~r~~~glsq~~lA~~~gis~~~is~~e~g 49 (91)
T 1x57_A 15 GKVIQQGRQSKGLTQKDLATKINEKPQVIADYESG 49 (91)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 34566778888999999999999999999999874
No 257
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=35.58 E-value=37 Score=22.18 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=22.8
Q ss_pred HHHHHH-HhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 121 LLDLIF-AVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 121 ~lD~l~-~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
++.++. .....+++.|+.||+|.+.+.+.|.
T Consensus 27 l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~ 58 (109)
T 2d1h_A 27 LLKMVEIEKPITSEELADIFKLSKTTVENSLK 58 (109)
T ss_dssp HHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 334443 3345689999999999999988765
No 258
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=35.53 E-value=65 Score=22.82 Aligned_cols=37 Identities=19% Similarity=0.172 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHh-------cCCHHHHHHHhcCChhHHHHHHh
Q 043121 115 SLGMQALLDLIFAV-------EGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 115 ~~~l~~~lD~l~~~-------~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+..-.+|+.|+.+ .+++.+.|+.++++.+.|+|+|.
T Consensus 15 ~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~ 58 (96)
T 2obp_A 15 DPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLT 58 (96)
T ss_dssp CHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHH
Confidence 34445577777665 47899999999999999999875
No 259
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=35.45 E-value=95 Score=21.43 Aligned_cols=41 Identities=7% Similarity=-0.041 Sum_probs=33.5
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 113 KFSLGMQALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 113 ~f~~~l~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
++-.+-..+-......+++..+.|+.+|+|++.+.++....
T Consensus 9 ~~~~~g~~lk~~R~~~glsq~~lA~~~gis~~~is~~E~g~ 49 (126)
T 3ivp_A 9 DFRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKG 49 (126)
T ss_dssp CTHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCC
Confidence 34344456777888999999999999999999999998764
No 260
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=35.28 E-value=44 Score=22.85 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=24.5
Q ss_pred HHHHHHHH-hcCCHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIFA-VEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~~-~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+|..|.. .+..+++.|+.+++|.+.+++.|.
T Consensus 35 ~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~ 67 (142)
T 3bdd_A 35 SILQTLLKDAPLHQLALQERLQIDRAAVTRHLK 67 (142)
T ss_dssp HHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 35555554 345799999999999999998775
No 261
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=35.25 E-value=42 Score=22.29 Aligned_cols=37 Identities=19% Similarity=0.082 Sum_probs=27.7
Q ss_pred chhHHHHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 114 FSLGMQALLDLIFAVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 114 f~~~l~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.++--..++.++ ..+.+.+++|+.||+|.+.+-+.+.
T Consensus 30 Lt~~e~~vl~l~-~~g~s~~eIA~~l~is~~tV~~~l~ 66 (91)
T 2rnj_A 30 LTEREMEILLLI-AKGYSNQEIASASHITIKTVKTHVS 66 (91)
T ss_dssp CCSHHHHHHHHH-HTTCCTTHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344455667664 7889999999999999988765543
No 262
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=35.25 E-value=20 Score=25.83 Aligned_cols=47 Identities=9% Similarity=0.099 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
..+...++++...+++ +.+.|+..|+|++.|-+-+.+-..++.++-+
T Consensus 17 ~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~ 66 (217)
T 3nrg_A 17 RLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQ 66 (217)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTCCTTGGGGTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHHHHcCCHHHHHHHHHH
Confidence 4788999999998754 8999999999999999999888888776654
No 263
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=35.23 E-value=34 Score=22.71 Aligned_cols=31 Identities=19% Similarity=-0.069 Sum_probs=23.1
Q ss_pred HHHHHHHhc--CCHHHHHHHhcCChhH-HHHHHh
Q 043121 121 LLDLIFAVE--GSVSEAAKLLWLSTGA-LSRLIL 151 (169)
Q Consensus 121 ~lD~l~~~~--~~~~~aa~~l~~st~~-L~k~l~ 151 (169)
+|-.+...+ ..+++.|+.++++.+. +++.|.
T Consensus 20 ~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~ 53 (95)
T 2pg4_A 20 TLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKD 53 (95)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHH
Confidence 344444443 6899999999999999 887764
No 264
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=35.22 E-value=48 Score=25.65 Aligned_cols=34 Identities=15% Similarity=0.052 Sum_probs=28.0
Q ss_pred cCCHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 129 EGSVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 129 ~~~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
+.++.++|+.||+|.+-|-+-.+..|..-..+++
T Consensus 48 ~lTv~eIA~~LGIS~~TLyrW~k~~p~~~~~l~~ 81 (155)
T 2ao9_A 48 KRTQDEMANELGINRTTLWEWRTKNQDFIAFKSE 81 (155)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHCHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHcCcchHHHHHH
Confidence 5789999999999999999999987765444443
No 265
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=35.07 E-value=15 Score=26.20 Aligned_cols=26 Identities=27% Similarity=0.182 Sum_probs=22.9
Q ss_pred HhcCCHHHHHHHhcCChhHHHHHHhc
Q 043121 127 AVEGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 127 ~~~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
....++.+.|+..++|++-++||.++
T Consensus 33 ~~~~si~elA~~~~vS~aTv~Rf~kk 58 (107)
T 3iwf_A 33 VVNMTSQEIANQLETSSTSIIRLSKK 58 (107)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHCCCHHHHHHHHHH
Confidence 35788999999999999999999864
No 266
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=35.07 E-value=57 Score=21.35 Aligned_cols=32 Identities=19% Similarity=0.000 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCHHHHHHHhcCChhHHHHHHhc
Q 043121 121 LLDLIFAVEGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 121 ~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
+-..+...+.+..+.|+.+|+|.+.+.++...
T Consensus 9 l~~~r~~~gltq~~lA~~~gis~~~is~~e~g 40 (99)
T 2l49_A 9 IVLMRKSEYLSRQQLADLTGVPYGTLSYYESG 40 (99)
T ss_dssp HHHHHHHTTCCHHHHHHHHCCCHHHHHHHTTT
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 45567788999999999999999999999874
No 267
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=34.62 E-value=25 Score=27.43 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.1
Q ss_pred CCHHHHHHHhcCChhHHHHHHhc
Q 043121 130 GSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 130 ~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
.++++||+.|++|.+++++.|+.
T Consensus 28 ~s~s~aA~~L~isq~avSr~I~~ 50 (230)
T 3cta_A 28 LTSSKLADMLGISQQSASRIIID 50 (230)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCHHHHHHHHCCCHHHHHHHHHH
Confidence 34999999999999999998763
No 268
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=34.58 E-value=35 Score=25.13 Aligned_cols=46 Identities=17% Similarity=-0.036 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHH
Q 043121 116 LGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVN 161 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n 161 (169)
..+...++++...|+ ++.++|+..|+|.+.|-+-+.+-..++.++=
T Consensus 7 ~Il~aA~~lf~~~G~~~~s~~~IA~~AGvskgtlY~hF~sKe~L~~a~~ 55 (208)
T 2g3b_A 7 AILKASATAIAQRGIRGLRVNDVAEVAGVSPGLLYYHFKDRIGLLEAAL 55 (208)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHHCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHH
Confidence 367888899988765 5999999999999999999988888776653
No 269
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=34.57 E-value=56 Score=22.43 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=24.5
Q ss_pred HHHHHHHHh-cCCHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIFAV-EGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~~~-~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+|..|... +..+++.|+.+++|.+.+++.|.
T Consensus 37 ~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~ 69 (145)
T 2a61_A 37 DILQKIYFEGPKRPGELSVLLGVAKSTVTGLVK 69 (145)
T ss_dssp HHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHH
Confidence 355555543 45799999999999999998775
No 270
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=34.45 E-value=40 Score=26.18 Aligned_cols=49 Identities=22% Similarity=0.169 Sum_probs=41.8
Q ss_pred chhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 114 FSLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 114 f~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
.-..+...++++.+.+. ++.+.|+.+|+|++.|-+-+.+-..++.+|-+
T Consensus 31 r~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~a~~~ 82 (241)
T 2hxi_A 31 TEQILDAAAELLLAGDAETFSVRKLAASLGTDSSSLYRHFRNKTELLRAVAD 82 (241)
T ss_dssp HHHHHHHHHHHHSSSSCCCCCHHHHHHHTTSCHHHHHHHTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccCCHHHHHHHhCcCHHHHHHHcCCHHHHHHHHHH
Confidence 35688999999988875 58999999999999999999998888877644
No 271
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=34.36 E-value=57 Score=22.93 Aligned_cols=33 Identities=12% Similarity=0.211 Sum_probs=24.9
Q ss_pred HHHHHHHHHhcC-CHHHHHHHhcCChhHHHHHHh
Q 043121 119 QALLDLIFAVEG-SVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 119 ~~~lD~l~~~~~-~~~~aa~~l~~st~~L~k~l~ 151 (169)
-.+|..|...++ .+++.|+.++++++.++++|.
T Consensus 44 ~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~ 77 (149)
T 4hbl_A 44 YLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLK 77 (149)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 345556654443 689999999999999998875
No 272
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=34.32 E-value=52 Score=22.65 Aligned_cols=32 Identities=9% Similarity=0.067 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIFAVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+|..|...+..+++.|+.+++|.+.+++.|.
T Consensus 41 ~iL~~l~~~~~~~~ela~~l~~s~~tvs~~l~ 72 (146)
T 2gxg_A 41 LVLRATSDGPKTMAYLANRYFVTQSAITASVD 72 (146)
T ss_dssp HHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHhcCCcCHHHHHHHhCCCchhHHHHHH
Confidence 34555553334688999999999999988775
No 273
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=34.27 E-value=66 Score=22.93 Aligned_cols=36 Identities=25% Similarity=0.037 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 118 MQALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 118 l~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
...+...+...+++-.+.|+.+|+|.+.++++....
T Consensus 42 g~~L~~~R~~~glTQ~eLA~~lGis~~~Is~iE~G~ 77 (120)
T 2o38_A 42 AYALNAVIDRARLSQAAAAARLGINQPKVSALRNYK 77 (120)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCC
Confidence 345667778889999999999999999999999853
No 274
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=34.23 E-value=47 Score=23.02 Aligned_cols=33 Identities=21% Similarity=0.125 Sum_probs=25.5
Q ss_pred HHHHHHHHH--hcCCHHHHHHHhcCChhHHHHHHh
Q 043121 119 QALLDLIFA--VEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 119 ~~~lD~l~~--~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
-.+|..|.. .+-.+++.|+.+++|.+.+++.|.
T Consensus 38 ~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~ 72 (147)
T 2hr3_A 38 LVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLR 72 (147)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHH
Confidence 346666665 334799999999999999998775
No 275
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=34.22 E-value=21 Score=23.80 Aligned_cols=31 Identities=35% Similarity=0.330 Sum_probs=23.2
Q ss_pred HHHHHHHhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 121 LLDLIFAVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 121 ~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
++..|....-.+++.|+.+|+|.+.+++-|+
T Consensus 28 Il~~L~~~~~~~~ela~~l~is~~tvs~~L~ 58 (98)
T 3jth_A 28 ILCMLHNQELSVGELCAKLQLSQSALSQHLA 58 (98)
T ss_dssp HHHHTTTSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 5555555444689999999999998887654
No 276
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=34.19 E-value=28 Score=25.95 Aligned_cols=49 Identities=14% Similarity=-0.035 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHHh
Q 043121 115 SLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNEL 163 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~~ 163 (169)
-.+|...++++.+.++ ++.++|+..|+|.+.|-+-+.+-..++.++=+.
T Consensus 38 ~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~~tlY~~F~sKe~L~~a~~~~ 89 (237)
T 3kkd_A 38 QAILDAAMRLIVRDGVRAVRHRAVAAEAQVPLSATTYYFKDIDDLITDTFAL 89 (237)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTTTC-----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcChhhcCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHH
Confidence 4589999999999887 489999999999999999999888888776543
No 277
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=34.12 E-value=30 Score=25.01 Aligned_cols=46 Identities=11% Similarity=-0.012 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHH
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAV 160 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~ 160 (169)
-..+...++++...+++ +.++|+..|+|.+.|-+-+.+-..++.++
T Consensus 17 ~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~yF~sKe~L~~~~ 65 (203)
T 3ccy_A 17 DTIIERAAAMFARQGYSETSIGDIARACECSKSRLYHYFDSKEAVLRDM 65 (203)
T ss_dssp HHHHHHHHHHHHHTCTTTSCHHHHHHHTTCCGGGGTTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcCeeeeeeCCHHHHHHHH
Confidence 45888999999998875 89999999999999888877766666655
No 278
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=33.99 E-value=48 Score=24.34 Aligned_cols=47 Identities=15% Similarity=0.054 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
..+...++++...+++ +.+.|+..|+|.+.|-+-+.+-..++.++=+
T Consensus 9 ~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~F~sK~~L~~~~~~ 58 (228)
T 3nnr_A 9 KILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEIFQ 58 (228)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhcCHHHHHHHhCCCCccchhcCCCHHHHHHHHHH
Confidence 4788899999988764 8999999999999999999888887776643
No 279
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=33.90 E-value=30 Score=26.74 Aligned_cols=49 Identities=18% Similarity=0.071 Sum_probs=41.1
Q ss_pred chhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 114 FSLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 114 f~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
.-..+...++++.+.++ ++.+.|+.+|+|++.|-+-+.+-..++.++=+
T Consensus 18 r~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~~~~~ 69 (237)
T 2hxo_A 18 RERIVGAAVELLDTVGERGLTFRALAERLATGPGAIYWHITGKAELLGAATD 69 (237)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCHHHHHHHHTSCGGGGGGTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccCCHHHHHHHHCCChHHHHHhcCCHHHHHHHHHH
Confidence 45689999999999875 48999999999999999988888877776543
No 280
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=33.88 E-value=25 Score=27.59 Aligned_cols=24 Identities=29% Similarity=0.180 Sum_probs=20.9
Q ss_pred hcCCHHHHHHHhcCChhHHHHHHh
Q 043121 128 VEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 128 ~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
..|+++.||+.|++|.+++++-|+
T Consensus 33 ~~gs~~~aa~~l~~s~~~~s~~i~ 56 (265)
T 1b9m_A 33 LSGSISQGAKDAGISYKSAWDAIN 56 (265)
T ss_dssp HHSSHHHHHHHHTCCHHHHHHHHH
T ss_pred HhCCHHHHHHHhCCCHHHHHHHHH
Confidence 467899999999999999998654
No 281
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=33.87 E-value=49 Score=23.09 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=19.0
Q ss_pred CHHHHHHHhcCChhHHHHHHh
Q 043121 131 SVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 131 ~~~~aa~~l~~st~~L~k~l~ 151 (169)
+++++|+.|++|.+.+++.|.
T Consensus 33 s~~ela~~l~is~~tv~~~l~ 53 (139)
T 2x4h_A 33 KINRIAKDLKIAPSSVFEEVS 53 (139)
T ss_dssp CHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHhCCChHHHHHHHH
Confidence 789999999999999998775
No 282
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=33.86 E-value=26 Score=24.50 Aligned_cols=46 Identities=11% Similarity=0.037 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHH
Q 043121 116 LGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVN 161 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n 161 (169)
..+.++++++...++ ++.+.|+..|+|++.|-+-+.+-..++..+=
T Consensus 16 ~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 64 (177)
T 3kkc_A 16 AIYNAFISLLQENDYSKITVQDVIGLANVGRSTFYSHYESKEVLLKELC 64 (177)
T ss_dssp HHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHHHTTTCSSTHHHHHHHH
T ss_pred HHHHHHHHHHHhCChhHhhHHHHHHHhCCcHhhHHHHcCCHHHHHHHHH
Confidence 367888888888776 5899999999999999988887777776653
No 283
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=33.23 E-value=61 Score=20.53 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCHHHHHHHhcCChhHHHHHHhc
Q 043121 121 LLDLIFAVEGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 121 ~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
+-......+.+-++.|+.+|+|.+.+.++-..
T Consensus 16 lr~~R~~~gltq~elA~~~gvs~~tis~~E~G 47 (73)
T 3fmy_A 16 IVKVRKKLSLTQKEASEIFGGGVNAFSRYEKG 47 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHCSCTTHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 55667888999999999999999999998765
No 284
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=33.16 E-value=60 Score=25.40 Aligned_cols=47 Identities=11% Similarity=0.015 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHH
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVN 161 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n 161 (169)
-.++...++++...+++ +.++|+..|+|.+.|-+-+.+-..++.++=
T Consensus 44 ~~Il~AA~~lf~e~G~~~~S~~~IA~~AGVs~~tlY~hF~sKe~Ll~av~ 93 (273)
T 3c07_A 44 ALILETAMRLFQERGYDRTTMRAIAQEAGVSVGNAYYYFAGKEHLIQGFY 93 (273)
T ss_dssp HHHHHHHHHHHHHTCSTTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccccCHHHHHHHHCCCHHHHHHHcCCHHHHHHHHH
Confidence 34789999999998864 999999999999999999988877776654
No 285
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=33.00 E-value=34 Score=24.95 Aligned_cols=45 Identities=11% Similarity=0.059 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHH
Q 043121 116 LGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAV 160 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~ 160 (169)
..+....+++...|++ +.+.|+..|+|.+.|-+-+.+-..++.+|
T Consensus 16 ~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~tlY~hF~sKe~L~~a~ 63 (200)
T 2hyj_A 16 RILGRAAEIASEEGLDGITIGRLAEELEMSKSGVHKHFGTKETLQIST 63 (200)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCChHHHHHHcCCHHHHHHHH
Confidence 4789999999998765 99999999999999988887777776655
No 286
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=32.60 E-value=50 Score=22.79 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=23.5
Q ss_pred HHHHHHHhcCCHHHHHHHh-cCChhHHHHHHh
Q 043121 121 LLDLIFAVEGSVSEAAKLL-WLSTGALSRLIL 151 (169)
Q Consensus 121 ~lD~l~~~~~~~~~aa~~l-~~st~~L~k~l~ 151 (169)
+|..|....-.+++.|+.+ ++|++.+++.|+
T Consensus 27 IL~~L~~~~~~~~eLa~~l~~is~~tvs~~L~ 58 (112)
T 1z7u_A 27 LMDELFQGTKRNGELMRALDGITQRVLTDRLR 58 (112)
T ss_dssp HHHHHHHSCBCHHHHHHHSTTCCHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHhccCCHHHHHHHHH
Confidence 3444444456789999999 999999998775
No 287
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=32.55 E-value=53 Score=24.49 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=26.7
Q ss_pred HHHHHHHHHH---hcCCHHHHHHHhcCChhHHHHHHh
Q 043121 118 MQALLDLIFA---VEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 118 l~~~lD~l~~---~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
--.+|..|.. .+-.+++.|+.+++|++.++++|.
T Consensus 43 q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~ 79 (189)
T 3nqo_A 43 QYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVA 79 (189)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHH
Confidence 3446666664 356799999999999999998875
No 288
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=32.33 E-value=19 Score=25.69 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
..+...++++...++ ++.+.|+..|+|++.|-+-+.+-..++.++=+
T Consensus 15 ~Il~aA~~lf~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~ 64 (204)
T 3eup_A 15 FIIESTAPVFNVKGLAGTSLTDLTEATNLTKGSIYGNFENKEAVAIAAFD 64 (204)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHTTTSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCCcHHHHHhCCCHHHHHHHHHH
Confidence 478888999988875 58999999999999999888887777766543
No 289
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=32.25 E-value=75 Score=21.60 Aligned_cols=35 Identities=26% Similarity=0.137 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 119 QALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 119 ~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
..+-......+.+..+.|+.+|+|.+.+.++....
T Consensus 31 ~~l~~~R~~~glsq~~lA~~~gis~~~is~~E~g~ 65 (117)
T 3f52_A 31 AALRSFRADKGVTLRELAEASRVSPGYLSELERGR 65 (117)
T ss_dssp HHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCC
Confidence 44566778889999999999999999999998764
No 290
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=32.17 E-value=51 Score=21.96 Aligned_cols=22 Identities=9% Similarity=-0.142 Sum_probs=19.3
Q ss_pred CCHHHHHHHhcCChhHHHHHHh
Q 043121 130 GSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 130 ~~~~~aa~~l~~st~~L~k~l~ 151 (169)
-.+++.|+.++++.+.++++|.
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~ 52 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIK 52 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHH
Confidence 3689999999999999998875
No 291
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=32.11 E-value=49 Score=23.15 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=24.7
Q ss_pred HHHHHHHHhc-CCHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIFAVE-GSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~~~~-~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+|..|...+ -.+++.|+.++++.+.++++|.
T Consensus 45 ~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~ 77 (154)
T 2qww_A 45 AMINVIYSTPGISVADLTKRLIITGSSAAANVD 77 (154)
T ss_dssp HHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 4566666543 3689999999999999998765
No 292
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=32.03 E-value=35 Score=21.76 Aligned_cols=22 Identities=9% Similarity=-0.165 Sum_probs=19.3
Q ss_pred CHHHHHHHhcCChhHHHHHHhc
Q 043121 131 SVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 131 ~~~~aa~~l~~st~~L~k~l~~ 152 (169)
.++++|+.||+|.+-+-++++.
T Consensus 12 ~~~eva~~lgvsrstiy~~~~~ 33 (66)
T 1z4h_A 12 DLKFIMADTGFGKTFIYDRIKS 33 (66)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHC
Confidence 4688999999999999998874
No 293
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=32.02 E-value=36 Score=23.16 Aligned_cols=23 Identities=9% Similarity=0.078 Sum_probs=20.4
Q ss_pred CCHHHHHHHhcCChhHHHHHHhc
Q 043121 130 GSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 130 ~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
.++..+|..||+|++.|.+.++.
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHH
Confidence 57899999999999999887765
No 294
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=31.96 E-value=45 Score=23.70 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=23.4
Q ss_pred HHHHHHHhc-CCHHHHHHHhcCChhHHHHHHh
Q 043121 121 LLDLIFAVE-GSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 121 ~lD~l~~~~-~~~~~aa~~l~~st~~L~k~l~ 151 (169)
+|..|...+ -.+++.|+.++++++.++++|.
T Consensus 55 vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~ 86 (159)
T 3s2w_A 55 FLMRLYREDGINQESLSDYLKIDKGTTARAIQ 86 (159)
T ss_dssp HHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 444454443 3689999999999999998875
No 295
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=31.96 E-value=28 Score=25.08 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 115 SLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
-..+..+++++...++ ++++.|+..|+|++.|-+-+.+-..++..+=+
T Consensus 16 ~~Il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 66 (195)
T 2iu5_A 16 KIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFYNYFQNQEELLSWIFE 66 (195)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGGGTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCeeCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 4578899999999875 49999999999999999888777777665543
No 296
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=31.95 E-value=68 Score=21.98 Aligned_cols=36 Identities=14% Similarity=-0.097 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 118 MQALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 118 l~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
-..+-......+++.++.|+.+|+|.+.+.++....
T Consensus 23 g~~lr~~R~~~gltq~elA~~~gis~~~is~~E~G~ 58 (114)
T 3vk0_A 23 AYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKR 58 (114)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCC
Confidence 345566778889999999999999999999998764
No 297
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=31.91 E-value=54 Score=23.04 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=24.1
Q ss_pred HHHHHHHHhc-CCHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIFAVE-GSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~~~~-~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+|..|...+ -.+++.|+.++++.+.++++|.
T Consensus 47 ~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~ 79 (155)
T 3cdh_A 47 RVLACLVDNDAMMITRLAKLSLMEQSRMTRIVD 79 (155)
T ss_dssp HHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHH
Confidence 3555555433 3789999999999999998775
No 298
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=31.75 E-value=78 Score=21.42 Aligned_cols=33 Identities=18% Similarity=0.056 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhc
Q 043121 120 ALLDLIFAVEGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 120 ~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
.+-..+...+.+.++.|+.+|+|.+.+.++...
T Consensus 13 ~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g 45 (114)
T 3op9_A 13 NLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSG 45 (114)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 455677888999999999999999999999874
No 299
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=31.69 E-value=24 Score=25.16 Aligned_cols=47 Identities=21% Similarity=0.107 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHH
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVN 161 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n 161 (169)
-.++...++++...+++ +.+.|+..|+|.+.|-+-+.+-..++..+=
T Consensus 19 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~ 68 (211)
T 3him_A 19 ARIRAAAIEVFAAKGYGATTTREIAASLDMSPGAVYPHYKTKESLLYAIS 68 (211)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHTTCCTTSSTTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCcChhhhcCCCHHHHHHHHH
Confidence 35889999999998864 899999999999998888877777766653
No 300
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=31.67 E-value=28 Score=24.35 Aligned_cols=32 Identities=25% Similarity=0.183 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIFAVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+|..|....-.+++.|+.||+|.+.+++-|+
T Consensus 22 ~Il~~L~~~~~~~~eLa~~l~is~~tvs~hL~ 53 (118)
T 3f6o_A 22 AVLGRLSRGPATVSELAKPFDMALPSFMKHIH 53 (118)
T ss_dssp HHHHHHHTCCEEHHHHHTTCCSCHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHhCcCHHHHHHHHH
Confidence 45666665555689999999999999987664
No 301
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=31.66 E-value=61 Score=22.84 Aligned_cols=32 Identities=9% Similarity=0.091 Sum_probs=24.8
Q ss_pred HHHHHHHHh-cCCHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIFAV-EGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~~~-~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+|..|... +..+++.|+.|+++.+.+++.|.
T Consensus 48 ~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~ 80 (154)
T 2eth_A 48 YAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVD 80 (154)
T ss_dssp HHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 455666554 45799999999999999998765
No 302
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=31.66 E-value=71 Score=21.55 Aligned_cols=33 Identities=9% Similarity=0.130 Sum_probs=25.5
Q ss_pred HHHHHHHHHHh-cCCHHHHHHHhcCChhHHHHHH
Q 043121 118 MQALLDLIFAV-EGSVSEAAKLLWLSTGALSRLI 150 (169)
Q Consensus 118 l~~~lD~l~~~-~~~~~~aa~~l~~st~~L~k~l 150 (169)
|..++|.|... .-++++.|+.|++|+.-+-+-|
T Consensus 4 L~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL 37 (78)
T 1xn7_A 4 LIQVRDLLALRGRMEAAQISQTLNTPQPMINAML 37 (78)
T ss_dssp HHHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHH
Confidence 57788888764 3568999999999988766544
No 303
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=31.36 E-value=46 Score=25.11 Aligned_cols=49 Identities=16% Similarity=0.077 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHh-cC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHHh
Q 043121 115 SLGMQALLDLIFAV-EG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNEL 163 (169)
Q Consensus 115 ~~~l~~~lD~l~~~-~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~~ 163 (169)
-..+...++++... ++ ++.+.|+..|+|++.|-+-+.+-..++.++=+.
T Consensus 8 ~~Il~aA~~l~~~~~G~~~~s~~~IA~~aGvs~~tlY~~F~sK~~Ll~av~~~ 60 (220)
T 1z0x_A 8 DTIIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYWYFKNKQALLQSMAEA 60 (220)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccCCHHHHHHHcCCCHHHHHHhcCCHHHHHHHHHHH
Confidence 45788899999998 54 699999999999999999998888888776543
No 304
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=31.21 E-value=63 Score=23.63 Aligned_cols=32 Identities=28% Similarity=0.100 Sum_probs=27.1
Q ss_pred HHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 122 LDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 122 lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
.......+.+-++.|+.+|+|.+.+.++....
T Consensus 74 ~~~R~~~glTq~elA~~lGis~s~is~~E~G~ 105 (141)
T 3kxa_A 74 VSLRMKKGFTQSELATAAGLPQPYLSRIENSK 105 (141)
T ss_dssp HHHHHHTTCCHHHHHHHTTCCHHHHHHHHHTC
T ss_pred HHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCC
Confidence 34567778899999999999999999998864
No 305
>2xpw_A Tetracycline repressor protein class D; transcription, transcription regulator, helix-turn-helix, ME coordination; HET: OTC MES; 1.44A {Escherichia coli} PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A* 2o7o_A* 2x6o_A* 2x9d_A* 2xps_A* 2xpt_A* 2vke_A* 2xpu_A* 2xpv_A* 2tct_A* 2xb5_A* 2trt_A* 2xrl_A* 1qpi_A* 1a6i_A ...
Probab=30.98 E-value=64 Score=24.22 Aligned_cols=48 Identities=15% Similarity=0.046 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHhc---CCHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 115 SLGMQALLDLIFAVE---GSVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~---~~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
...+...++++...+ -++.+.|+.+|+|++.|-+-+.+-..++.++=+
T Consensus 6 ~~Il~aA~~l~~~~G~~~~s~~~IA~~~Gvs~~slY~hF~~K~~Ll~~~~~ 56 (207)
T 2xpw_A 6 ESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDALAV 56 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHHhcCCHHHHHHHHHH
Confidence 346778888888876 468999999999999999999888888776543
No 306
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=30.95 E-value=75 Score=24.30 Aligned_cols=35 Identities=11% Similarity=0.214 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 118 MQALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 118 l~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
+..+++.+. .+.++..+|+.||+|++.+-|++...
T Consensus 165 v~~i~~~~~-~G~s~~~Ia~~l~is~~tv~r~l~~~ 199 (209)
T 2r0q_C 165 YHRVVEMLE-EGQAISKIAKEVNITRQTVYRIKHDN 199 (209)
T ss_dssp HHHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHhcc
Confidence 556777654 57899999999999999999988654
No 307
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=30.57 E-value=65 Score=22.04 Aligned_cols=31 Identities=19% Similarity=0.096 Sum_probs=23.5
Q ss_pred HHHHH-HH-hcCCHHHHHHHhcCChhHHHHHHh
Q 043121 121 LLDLI-FA-VEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 121 ~lD~l-~~-~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
+|..| .. -.-.+++.|+.+++|.+.+++.|.
T Consensus 42 iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~ 74 (146)
T 2fbh_A 42 VLLHLARHRDSPTQRELAQSVGVEGPTLARLLD 74 (146)
T ss_dssp HHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHH
Confidence 55555 32 233799999999999999998775
No 308
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=30.54 E-value=43 Score=24.24 Aligned_cols=47 Identities=9% Similarity=0.024 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHH
Q 043121 115 SLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVN 161 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n 161 (169)
-..+....+++...++ ++.++|+..|+|.+.|-+-+.+-..++.++=
T Consensus 8 ~~Il~aA~~lf~~~Gy~~~s~~~IA~~AgvskgtlY~yF~sKe~L~~~~~ 57 (202)
T 2id6_A 8 DAILKAAVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAY 57 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCTHHHHHHHSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 3478888999998875 5999999999999999999888777776553
No 309
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=30.52 E-value=47 Score=22.60 Aligned_cols=32 Identities=9% Similarity=0.127 Sum_probs=24.3
Q ss_pred HHHHHHHHhc-CCHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIFAVE-GSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~~~~-~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+|..|...+ -.+++.|+.+++|.+.+++.|.
T Consensus 37 ~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~ 69 (139)
T 3bja_A 37 GVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQ 69 (139)
T ss_dssp HHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHH
T ss_pred HHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHH
Confidence 4555665533 3789999999999999988775
No 310
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=30.19 E-value=16 Score=25.84 Aligned_cols=48 Identities=13% Similarity=-0.038 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
-.++...++++...+++ +.+.|+..|+|.+.|-+-+.+-..++.++=+
T Consensus 15 ~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~ 65 (199)
T 3on2_A 15 RVLLARAESTLEKDGVDGLSLRQLAREAGVSHAAPSKHFRDRQALLDALAE 65 (199)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHTC-----CCCSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcChhhhhHHHHHHHhCCChHHHHHHhCCHHHHHHHHHH
Confidence 45899999999998864 8999999999999988887777777665543
No 311
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=30.19 E-value=91 Score=20.50 Aligned_cols=37 Identities=8% Similarity=0.179 Sum_probs=28.4
Q ss_pred chhHHHHHHHHHHH----hcCCHHHHHHHhcCChhHHHHHH
Q 043121 114 FSLGMQALLDLIFA----VEGSVSEAAKLLWLSTGALSRLI 150 (169)
Q Consensus 114 f~~~l~~~lD~l~~----~~~~~~~aa~~l~~st~~L~k~l 150 (169)
.|+--..++-.... -+.+.+++|+.||+|.+.+-+.+
T Consensus 19 L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~ 59 (87)
T 1tty_A 19 LSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIE 59 (87)
T ss_dssp SCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 34555667777665 67899999999999999877654
No 312
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=30.16 E-value=50 Score=24.71 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhc
Q 043121 120 ALLDLIFAVEGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 120 ~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
.+++.. ..+.++..+|+.|++|++.+-++|+.
T Consensus 150 ~i~~~~-~~G~s~~~Ia~~l~is~~tv~r~l~~ 181 (183)
T 1gdt_A 150 AVLNMW-QQGLGASHISKTMNIARSTVYKVINE 181 (183)
T ss_dssp HHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred HHHHHH-HCCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 455544 46789999999999999999998864
No 313
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=30.15 E-value=51 Score=23.14 Aligned_cols=31 Identities=16% Similarity=0.187 Sum_probs=24.2
Q ss_pred HHHHHHHhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 121 LLDLIFAVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 121 ~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
+|..|...+-.+++.|+.+++|.+.++++|.
T Consensus 43 iL~~l~~~~~t~~eLa~~l~~~~~~vs~~l~ 73 (151)
T 3kp7_A 43 VLNMLSIEALTVGQITEKQGVNKAAVSRRVK 73 (151)
T ss_dssp HHHHHHHSCBCHHHHHHHHCSCSSHHHHHHH
T ss_pred HHHHHHcCCcCHHHHHHHHCCCHHHHHHHHH
Confidence 4555544555789999999999999998875
No 314
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=29.92 E-value=93 Score=22.30 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=26.0
Q ss_pred HHHHHHHHHHH-hcCCHHHHHHHhcCChhHHHHHHh
Q 043121 117 GMQALLDLIFA-VEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 117 ~l~~~lD~l~~-~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.-..+|+.|.. ..-+.++.|+.+|+|.+.+.+-|+
T Consensus 9 ~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~ 44 (152)
T 2cg4_A 9 LDRGILEALMGNARTAYAELAKQFGVSPETIHVRVE 44 (152)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 33456777665 345789999999999998887654
No 315
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=29.56 E-value=55 Score=25.75 Aligned_cols=32 Identities=25% Similarity=0.256 Sum_probs=25.1
Q ss_pred HHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhc
Q 043121 121 LLDLIFAVEGS---VSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 121 ~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~ 152 (169)
+...+...+|. ++.+|+.||+|++.|.+.++.
T Consensus 253 i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~ 287 (324)
T 1hqc_A 253 LEVLILRFGGGPVGLATLATALSEDPGTLEEVHEP 287 (324)
T ss_dssp HHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHH
T ss_pred HHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhH
Confidence 34445566788 999999999999999886654
No 316
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=29.56 E-value=98 Score=22.33 Aligned_cols=46 Identities=15% Similarity=0.010 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHhcC--CHHHHHHHhcCChhHHHHHHhcChhHHHHHH
Q 043121 116 LGMQALLDLIFAVEG--SVSEAAKLLWLSTGALSRLILSDDSHQIAVN 161 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~--~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n 161 (169)
..+...++++...++ ++.+.|+..|+|.+.|-+-+.+-..++.++=
T Consensus 16 ~Il~aA~~lf~~~G~~~s~~~IA~~agvs~~tiY~~F~sK~~L~~~~~ 63 (224)
T 1t33_A 16 QLIAAALAQFGEYGLHATTRDIAALAGQNIAAITYYFGSKEDLYLACA 63 (224)
T ss_dssp HHHHHHHHHHHHHGGGSCHHHHHHHHTSCHHHHHHHHSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccccHHHHHHHhCCCHHHHHHhcCCHHHHHHHHH
Confidence 478899999998875 5778999999999999999998888887764
No 317
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=29.42 E-value=22 Score=25.25 Aligned_cols=47 Identities=13% Similarity=-0.013 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
..+...++++...++ ++.+.|+..|+|++.|-+-+.+-..++.++=+
T Consensus 7 ~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~ 56 (189)
T 3geu_A 7 KIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVK 56 (189)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHTTCCHHHHTTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHhCCHHHHHHHHHH
Confidence 367788888888764 48999999999999998888877777766533
No 318
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=29.09 E-value=79 Score=22.06 Aligned_cols=32 Identities=25% Similarity=0.458 Sum_probs=24.3
Q ss_pred HHHHHHHHhc-CCHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIFAVE-GSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~~~~-~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+|..|...+ -.+++.|+.+++|.+.+++.|.
T Consensus 51 ~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~ 83 (153)
T 2pex_A 51 LVMLVLWETDERSVSEIGERLYLDSATLTPLLK 83 (153)
T ss_dssp HHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHH
Confidence 4556665533 3688899999999999998875
No 319
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=28.60 E-value=78 Score=23.42 Aligned_cols=34 Identities=21% Similarity=0.126 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhc
Q 043121 119 QALLDLIFAVEGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 119 ~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
..+-..+...+.+.++.|+.+|+|.+.+.++...
T Consensus 14 ~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g 47 (192)
T 1y9q_A 14 NQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERG 47 (192)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3455677788999999999999999999999875
No 320
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=28.32 E-value=55 Score=22.86 Aligned_cols=33 Identities=6% Similarity=0.144 Sum_probs=19.6
Q ss_pred HHHHHHHHHh---cCCHHHHHHHhcCChhHHHHHHh
Q 043121 119 QALLDLIFAV---EGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 119 ~~~lD~l~~~---~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
-.+|..|... +-.+++.|+.++++++.++++|.
T Consensus 44 ~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~ 79 (148)
T 3jw4_A 44 GRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQ 79 (148)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHC------CHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHH
Confidence 3456666664 44789999999999999998775
No 321
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=28.15 E-value=49 Score=23.80 Aligned_cols=33 Identities=24% Similarity=0.168 Sum_probs=23.1
Q ss_pred HHHHHHHHHh---cCCHHHHHHHhcCChhHHHHHHh
Q 043121 119 QALLDLIFAV---EGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 119 ~~~lD~l~~~---~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
-.+|..|... +-.+++.|+.|+++.+.++++|.
T Consensus 49 ~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~ 84 (168)
T 3u2r_A 49 YNTLRLLRSVHPEGMATLQIADRLISRAPDITRLID 84 (168)
T ss_dssp HHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHH
T ss_pred HHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHH
Confidence 3466777775 34689999999999999998875
No 322
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=28.12 E-value=98 Score=24.00 Aligned_cols=42 Identities=14% Similarity=0.036 Sum_probs=29.5
Q ss_pred HHHHHHHhcCCHHHHHHHhcCChhHHHHH---HhcChhHHHHHHH
Q 043121 121 LLDLIFAVEGSVSEAAKLLWLSTGALSRL---ILSDDSHQIAVNE 162 (169)
Q Consensus 121 ~lD~l~~~~~~~~~aa~~l~~st~~L~k~---l~~~~~~~~~~n~ 162 (169)
.+--+-..+++...+|+.||.|.+.+.+. +...|.+..+|.+
T Consensus 44 a~~~L~~~G~t~eeiA~~lG~s~s~V~~~LrLl~Lp~~v~~~v~~ 88 (178)
T 1r71_A 44 FIGRELAKGKKKGDIAKEIGKSPAFITQHVTLLDLPEKIADAFNT 88 (178)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHGGGSCCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHcCCHHHHHHHHc
Confidence 33333334899999999999999887655 4556677666643
No 323
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=28.10 E-value=74 Score=21.20 Aligned_cols=32 Identities=13% Similarity=0.026 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCHHHHHHHhcCChhHHHHHHhc
Q 043121 121 LLDLIFAVEGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 121 ~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
+-......+.+..+.|+.+|+|.+.+.++-..
T Consensus 35 lk~~R~~~glsq~elA~~lgvs~~~is~~E~G 66 (99)
T 2ppx_A 35 IKIIRRALKLTQEEFSARYHIPLGTLRDWEQG 66 (99)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 55667778999999999999999999998764
No 324
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=28.04 E-value=28 Score=22.72 Aligned_cols=40 Identities=10% Similarity=0.129 Sum_probs=27.5
Q ss_pred CCCCCcCCc--cCceEEEEeeCCc-----eEEEEcccCCHHHHHHHHHHHHh
Q 043121 37 GPGSQHRNK--RESAVRLKHVPTG-----VIAHAAEDRSQHKNHASSVNLDA 81 (169)
Q Consensus 37 GpGGQ~vNk--~~saVrl~H~ptG-----i~v~~~~~RSq~~Nr~~Al~~L~ 81 (169)
||||.++++ -+|.|+|.--+.| +.|... . .+-+.|.+++.
T Consensus 21 G~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~---~--~~v~~A~~~I~ 67 (71)
T 1vig_A 21 GKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGD---P--QGVQQAKRELL 67 (71)
T ss_dssp CSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEES---S--HHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcC---H--HHHHHHHHHHH
Confidence 899999995 5788888776666 344432 2 35677777664
No 325
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=27.99 E-value=82 Score=22.84 Aligned_cols=33 Identities=21% Similarity=0.121 Sum_probs=25.6
Q ss_pred HHHHHHHHHhc--CCHHHHHHHhcCChhHHHHHHh
Q 043121 119 QALLDLIFAVE--GSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 119 ~~~lD~l~~~~--~~~~~aa~~l~~st~~L~k~l~ 151 (169)
-.+|..|...+ -.+++.|+.++++.+.++++|.
T Consensus 56 ~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~ 90 (166)
T 3deu_A 56 WVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLD 90 (166)
T ss_dssp HHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHH
Confidence 34666676633 3689999999999999998875
No 326
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=27.99 E-value=78 Score=22.62 Aligned_cols=33 Identities=12% Similarity=0.126 Sum_probs=25.0
Q ss_pred HHHHHHHHH-hcCCHHHHHHHhcCChhHHHHHHh
Q 043121 119 QALLDLIFA-VEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 119 ~~~lD~l~~-~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
..+|+.|.. ..-+.++.|+.+|+|.+.+.+.|+
T Consensus 8 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~ 41 (144)
T 2cfx_A 8 LNIIEELKKDSRLSMRELGRKIKLSPPSVTERVR 41 (144)
T ss_dssp HHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 356666654 345789999999999998887664
No 327
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=27.97 E-value=92 Score=21.10 Aligned_cols=35 Identities=9% Similarity=-0.058 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 119 QALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 119 ~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
..+-......+.+.++.|+.+|+|.+.+.++....
T Consensus 31 ~~lr~~R~~~gltq~elA~~~gis~~~is~iE~G~ 65 (99)
T 3g5g_A 31 FVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNS 65 (99)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCC
Confidence 44566778889999999999999999999998863
No 328
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=27.94 E-value=49 Score=22.64 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=22.4
Q ss_pred HHHHHHhcCCHHHHHHHh-cCChhHHHHHHh
Q 043121 122 LDLIFAVEGSVSEAAKLL-WLSTGALSRLIL 151 (169)
Q Consensus 122 lD~l~~~~~~~~~aa~~l-~~st~~L~k~l~ 151 (169)
|..|....-.+++.|+.+ |+|++.+++.|+
T Consensus 20 L~~L~~~~~~~~eLa~~l~~is~~tls~~L~ 50 (107)
T 2hzt_A 20 LXHLTHGKKRTSELKRLMPNITQKMLTQQLR 50 (107)
T ss_dssp HHHHTTCCBCHHHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHhcCCCHHHHHHHHH
Confidence 334443345689999999 999999998775
No 329
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=27.85 E-value=85 Score=21.24 Aligned_cols=37 Identities=16% Similarity=0.049 Sum_probs=27.4
Q ss_pred chhHHHHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 114 FSLGMQALLDLIFAVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 114 f~~~l~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
++.--..++.++. .+.+.+++|+.|++|...+-.-+.
T Consensus 30 Lt~rE~~Vl~l~~-~G~s~~eIA~~L~iS~~TV~~~~~ 66 (90)
T 3ulq_B 30 LTPRECLILQEVE-KGFTNQEIADALHLSKRSIEYSLT 66 (90)
T ss_dssp CCHHHHHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3444556777766 889999999999999887655443
No 330
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=27.52 E-value=82 Score=23.28 Aligned_cols=34 Identities=18% Similarity=-0.004 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhc
Q 043121 119 QALLDLIFAVEGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 119 ~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
..+-......+.+.++.|+.+|+|.+.|.++...
T Consensus 13 ~~l~~~r~~~g~s~~~la~~~gis~~~ls~~e~g 46 (198)
T 2bnm_A 13 ELLKDRREQVKMDHAALASLLGETPETVAAWENG 46 (198)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3455677788999999999999999999999875
No 331
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=27.47 E-value=58 Score=22.87 Aligned_cols=33 Identities=21% Similarity=0.168 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 119 QALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 119 ~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
..+|--|+..+- ...|+.+|++.|+++|.-..+
T Consensus 16 s~iL~~La~~gQ--~~vAe~~GvdeStISR~k~~~ 48 (83)
T 1zs4_A 16 SALLNKIAMLGT--EKTAEAVGVDKSQISRWKRDW 48 (83)
T ss_dssp HHHHHHHHHHCH--HHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh--HHHHHHhCCCHHHHhhhhhhH
Confidence 446666777665 889999999999999976654
No 332
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=27.46 E-value=90 Score=21.60 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=23.9
Q ss_pred HHHHHHHHh-cCCHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIFAV-EGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~~~-~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+|..|... +-.+++.|+.++++.+.+++.|.
T Consensus 44 ~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~ 76 (152)
T 3bj6_A 44 AILEGLSLTPGATAPQLGAALQMKRQYISRILQ 76 (152)
T ss_dssp HHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 355555543 34688899999999999998775
No 333
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=27.37 E-value=81 Score=21.81 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 121 LLDLIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 121 ~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
+-......+++..+.|+.+|+|.+.+.++....
T Consensus 28 Lk~~R~~~gltq~elA~~~gis~~~is~~E~G~ 60 (111)
T 3mlf_A 28 LKELRTDYGLTQKELGDLFKVSSRTIQNMEKDS 60 (111)
T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHHHHCC
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCC
Confidence 556777889999999999999999999998753
No 334
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=27.02 E-value=76 Score=22.79 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=23.3
Q ss_pred HHHHHHHhcCCHHHHHHHhcCChhHHHHH
Q 043121 121 LLDLIFAVEGSVSEAAKLLWLSTGALSRL 149 (169)
Q Consensus 121 ~lD~l~~~~~~~~~aa~~l~~st~~L~k~ 149 (169)
+...|...+....++|+.||+|++-.+|+
T Consensus 50 l~~~L~~ge~TQREIA~~lGiS~stISRi 78 (101)
T 1jhg_A 50 IIEELLRGEMSQRELKNELGAGIATITRG 78 (101)
T ss_dssp HHHHHHHCCSCHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHcCCcCHHHHHHHHCCChhhhhHH
Confidence 33444555688999999999999999987
No 335
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=26.59 E-value=22 Score=25.61 Aligned_cols=47 Identities=15% Similarity=0.010 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
.++...++++...+++ +.+.|+..|+|.+.|-+-+.+-..++.+|=+
T Consensus 23 ~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~ 72 (216)
T 3qqa_A 23 KIKAVALELFLTKGYQETSLSDIIKLSGGSYSNIYDGFKSKEGLFFEILD 72 (216)
T ss_dssp HHHHHHHHHHHHTCTTTCCHHHHHHHHTTSCCSSSCSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcChhhCCHHHHHHHhCCCHHHHHHhcCCHHHHHHHHHH
Confidence 3788899999888765 8889999999998888777776666665543
No 336
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=26.52 E-value=97 Score=22.14 Aligned_cols=34 Identities=24% Similarity=0.133 Sum_probs=25.7
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHhcCChhHHHHHHh
Q 043121 118 MQALLDLIFA-VEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 118 l~~~lD~l~~-~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
-..+|+.|.. ..-+.++.|+.+|+|.+.+.+.|+
T Consensus 9 ~~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~ 43 (150)
T 2w25_A 9 DRILVRELAADGRATLSELATRAGLSVSAVQSRVR 43 (150)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3456666654 345789999999999999887664
No 337
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=26.44 E-value=51 Score=24.17 Aligned_cols=33 Identities=21% Similarity=0.119 Sum_probs=26.0
Q ss_pred HHHHHHHHHhc----CCHHHHHHHhcCChhHHHHHHh
Q 043121 119 QALLDLIFAVE----GSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 119 ~~~lD~l~~~~----~~~~~aa~~l~~st~~L~k~l~ 151 (169)
-.+|..|...+ -.+++.|+.++++.+.++++|.
T Consensus 72 ~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~ 108 (181)
T 2fbk_A 72 WDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIV 108 (181)
T ss_dssp HHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 34666777665 4899999999999999887764
No 338
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=26.40 E-value=77 Score=25.18 Aligned_cols=27 Identities=19% Similarity=0.007 Sum_probs=23.8
Q ss_pred HHhcCCHHHHHHHhcCChhHHHHHHhc
Q 043121 126 FAVEGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 126 ~~~~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
-..+..-.++|+.||+|...++|+|..
T Consensus 21 y~~g~tQ~eIA~~lGiSr~~VSR~L~~ 47 (192)
T 1zx4_A 21 KNDGMSQKDIAAKEGLSQAKVTRALQA 47 (192)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 567788999999999999999998854
No 339
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=26.06 E-value=62 Score=22.54 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=24.6
Q ss_pred HHHHHHHHh---cCCHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIFAV---EGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~~~---~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+|..|... +-.+++.|+.|+++.+.++++|.
T Consensus 41 ~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~ 75 (127)
T 2frh_A 41 AVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVK 75 (127)
T ss_dssp HHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHH
T ss_pred HHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHH
Confidence 455556554 34689999999999999998875
No 340
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=26.00 E-value=88 Score=22.46 Aligned_cols=33 Identities=12% Similarity=0.239 Sum_probs=25.0
Q ss_pred HHHHHHHHH-hcCCHHHHHHHhcCChhHHHHHHh
Q 043121 119 QALLDLIFA-VEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 119 ~~~lD~l~~-~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
..+|+.|.. ..-+.++.|+.+|+|.+.+.+.|+
T Consensus 10 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~ 43 (151)
T 2cyy_A 10 KKIIKILQNDGKAPLREISKITGLAESTIHERIR 43 (151)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 356666654 345789999999999999887654
No 341
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=25.89 E-value=98 Score=22.23 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcCh
Q 043121 118 MQALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSDD 154 (169)
Q Consensus 118 l~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~~ 154 (169)
...+...+...+..++.+|+.|++|...+-+.|+..+
T Consensus 145 ~~~~~~~~~~~~~~~~~ia~~l~is~~tv~~~l~~~~ 181 (184)
T 3rqi_A 145 WEHIQRVLAENNNNISATARALNMHRRTLQRKLAKKP 181 (184)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHCC--
T ss_pred HHHHHHHHHhccccHHHHHHHcCCcHHHHHHHHHhcC
Confidence 3445556667788999999999999999998887654
No 342
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=25.87 E-value=53 Score=22.26 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=25.9
Q ss_pred HHHHhcCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 124 LIFAVEGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 124 ~l~~~~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
.+...+.+..+.|+.+|+|.+.+.++....
T Consensus 19 ~r~~~glsq~~lA~~~gis~~~is~~e~g~ 48 (113)
T 2eby_A 19 YLEPLDLKINELAELLHVHRNSVSALINNN 48 (113)
T ss_dssp TTTTTTCCHHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcCC
Confidence 677788899999999999999999988753
No 343
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=25.86 E-value=95 Score=21.79 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=24.2
Q ss_pred HHHHHHHH-hcCCHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIFA-VEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~~-~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+|..|.. -+..+++.|+.+++|.+.+++.|.
T Consensus 53 ~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~ 85 (162)
T 2fa5_A 53 RVITILALYPGSSASEVSDRTAMDKVAVSRAVA 85 (162)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 35555554 345688899999999999998765
No 344
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=25.85 E-value=79 Score=26.20 Aligned_cols=42 Identities=10% Similarity=0.066 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhcC-ChhHHHHHHhcC----hhHHHH
Q 043121 118 MQALLDLIFAVEGSVSEAAKLLWL-STGALSRLILSD----DSHQIA 159 (169)
Q Consensus 118 l~~~lD~l~~~~~~~~~aa~~l~~-st~~L~k~l~~~----~~~~~~ 159 (169)
|..+..+|..-+.+++++|..+|+ |.+.|+|.+++. |+.++.
T Consensus 359 ~~~a~~~L~~~~~~i~~ia~~~Gf~~~~~f~~~Fk~~~g~tP~~~r~ 405 (412)
T 4fe7_A 359 LEKARSLLISTTLSINEISQMCGYPSLQYFYSVFKKAYDTTPKEYRD 405 (412)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHSSSCHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHcCCCCHHHHHHHHHHHHCcCHHHHHH
Confidence 677888888888899999999998 788899888864 555543
No 345
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=25.73 E-value=60 Score=24.36 Aligned_cols=49 Identities=12% Similarity=-0.018 Sum_probs=39.4
Q ss_pred chhHHHHHHHHHHHhc-CCHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 114 FSLGMQALLDLIFAVE-GSVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 114 f~~~l~~~lD~l~~~~-~~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
.-..+...++++.+.+ -++.+.|+.+|+|++.|-+-+.+-..++.++=+
T Consensus 13 r~~Il~aA~~l~~~~G~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~~~~~ 62 (213)
T 2g7g_A 13 RERIAEAALELVDRDGDFRMPDLARHLNVQVSSIYHHAKGRAAVVELVRH 62 (213)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHHTTSCHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHhCCCHhHHHHHcCCHHHHHHHHHH
Confidence 3457888899988887 337789999999999999988888877776643
No 346
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=25.65 E-value=74 Score=25.17 Aligned_cols=47 Identities=13% Similarity=-0.004 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
..+...++++...++ ++.++|+..|+|.+.|-+-+.+-..++.+|=+
T Consensus 124 ~il~aa~~l~~~~G~~~~T~~~IA~~AGvs~gtlY~yF~sKe~Ll~av~~ 173 (311)
T 4ich_A 124 RILETAWRLIARRGYHNVRIHDIASELGTSNATIHYHFPSKKDILLEALR 173 (311)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHhCCCchhHHHhCCCHHHHHHHHHH
Confidence 378888999988876 59999999999999999999988888776644
No 347
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=25.59 E-value=1.2e+02 Score=24.16 Aligned_cols=38 Identities=8% Similarity=0.054 Sum_probs=29.0
Q ss_pred HHHhcCCHHHHHHHhcCChhHHHHH---HhcChhHHHHHHH
Q 043121 125 IFAVEGSVSEAAKLLWLSTGALSRL---ILSDDSHQIAVNE 162 (169)
Q Consensus 125 l~~~~~~~~~aa~~l~~st~~L~k~---l~~~~~~~~~~n~ 162 (169)
+...+++..++|+.||.|.+.+.+. +...|.+..+|.+
T Consensus 130 l~~~g~t~~~iA~~lG~s~~~V~~~l~l~~l~~~v~~~l~~ 170 (230)
T 1vz0_A 130 LLEMGLTQEEVARRVGKARSTVANALRLLQLPPEALEALER 170 (230)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHHGGGSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHHHHcCCHHHHHHHHc
Confidence 3367899999999999999988655 4556677666654
No 348
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=25.33 E-value=68 Score=22.86 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=24.2
Q ss_pred HHHHHHHHh-cCCHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIFAV-EGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~~~-~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+|+.|... .-+.++.|+.||+|.+.+.+.|+
T Consensus 7 ~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~ 39 (150)
T 2pn6_A 7 RILKILQYNAKYSLDEIAREIRIPKATLSYRIK 39 (150)
T ss_dssp HHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 455655533 35789999999999999988765
No 349
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=25.20 E-value=70 Score=22.59 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=24.2
Q ss_pred HHHHHHHHhc-CCHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIFAVE-GSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~~~~-~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+|..|...+ -.+++.|+.|+++.+.++++|.
T Consensus 56 ~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~ 88 (162)
T 3cjn_A 56 RALAILSAKDGLPIGTLGIFAVVEQSTLSRALD 88 (162)
T ss_dssp HHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHH
Confidence 3555555432 3689999999999999998875
No 350
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=25.05 E-value=1.1e+02 Score=23.17 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhc--CCHHHHHHHhcCChhHHHHHHh
Q 043121 117 GMQALLDLIFAVE--GSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 117 ~l~~~lD~l~~~~--~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+..+++.+...+ -++.+.|+.||+|.+.+.+.|+
T Consensus 10 il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~ 46 (196)
T 3k2z_A 10 VLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLI 46 (196)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHH
Confidence 3444555555555 4788999999999888766553
No 351
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=25.02 E-value=53 Score=21.88 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=21.6
Q ss_pred hhHHHHHHhcChhHHHHHHHhhhhc
Q 043121 143 TGALSRLILSDDSHQIAVNELRTSK 167 (169)
Q Consensus 143 t~~L~k~l~~~~~~~~~~n~~R~~~ 167 (169)
--+++.+|+++|.+.+++=.+|+.+
T Consensus 26 qqqvl~ILksNPqLMAAfIKQR~~~ 50 (59)
T 1kbh_B 26 QQQVLNILKSNPQLMAAFIKQRTAK 50 (59)
T ss_dssp STHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 4578999999999999998888764
No 352
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=24.94 E-value=1e+02 Score=21.39 Aligned_cols=38 Identities=29% Similarity=0.126 Sum_probs=28.2
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 113 KFSLGMQALLDLIFAVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 113 ~f~~~l~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+++--..++.++ ..+.+.+++|+.|++|.+.+-.-+.
T Consensus 34 ~Lt~re~~Vl~l~-~~G~s~~EIA~~L~iS~~TV~~~l~ 71 (99)
T 1p4w_A 34 RLSPKESEVLRLF-AEGFLVTEIAKKLNRSIKTISSQKK 71 (99)
T ss_dssp SCCHHHHHHHHHH-HHTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3455556677664 5789999999999999887765543
No 353
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=24.92 E-value=57 Score=23.35 Aligned_cols=32 Identities=13% Similarity=0.086 Sum_probs=23.8
Q ss_pred HHHHHHHhc---CCHHHHHHHhcCChhHHHHHHhc
Q 043121 121 LLDLIFAVE---GSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 121 ~lD~l~~~~---~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
+|-.|...+ -.+++.|+.++++.+.++++|.+
T Consensus 40 vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~ 74 (147)
T 4b8x_A 40 ALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDR 74 (147)
T ss_dssp HHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 445554333 35789999999999999998753
No 354
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=24.92 E-value=80 Score=21.74 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=24.3
Q ss_pred HHHHHHHHh-cCCHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIFAV-EGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~~~-~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+|..|... +-.+++.|+.++++.+.+++.|.
T Consensus 44 ~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~ 76 (147)
T 1z91_A 44 LALLLLWEHETLTVKKMGEQLYLDSGTLTPMLK 76 (147)
T ss_dssp HHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHH
Confidence 455555543 34688999999999999998775
No 355
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=24.34 E-value=89 Score=23.79 Aligned_cols=45 Identities=16% Similarity=0.040 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHH
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIA 159 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~ 159 (169)
-.++...++++...+++ +.++|+..|+|.+.|-+-+.+-..|+.+
T Consensus 51 ~~Il~AA~~lf~e~G~~~~Ti~~IA~~AGvs~~t~Y~yF~sKe~Ll~a 98 (260)
T 2of7_A 51 EAIRAATYGLIRQQGYEATTVEQIAERAEVSPSTVLRYFPTREDIVLT 98 (260)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHCSSHHHHHTS
T ss_pred HHHHHHHHHHHHHhCcccccHHHHHHHhCCChHHHHHHcCCHHHHHHh
Confidence 34889999999999875 9999999999999999988776666654
No 356
>1wmg_A Netrin receptor UNC5H2; six helix bundle, death domain, apoptosis, structural genomi NPPSFA; 2.10A {Mus musculus} SCOP: a.77.1.2
Probab=24.31 E-value=99 Score=21.74 Aligned_cols=51 Identities=12% Similarity=0.023 Sum_probs=33.6
Q ss_pred CCCCchh----HHHHHHHHHHHhcCCHHHHHHHhcCChhHHHHHHhcCh-hHHHHHHH
Q 043121 110 NNPKFSL----GMQALLDLIFAVEGSVSEAAKLLWLSTGALSRLILSDD-SHQIAVNE 162 (169)
Q Consensus 110 Yn~~f~~----~l~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~~~-~~~~~~n~ 162 (169)
.-|..|. -|..+||.-...+.+-..-|+.||++. .|+.|...+ +....++.
T Consensus 8 ~~~~Lp~~~r~~L~~lLD~~~~~g~dWr~LA~~Lg~~~--~i~~~~~~~SPt~~LL~~ 63 (103)
T 1wmg_A 8 YAFKIPLSIRQKICSSLDAPNSRGNDWRLLAQKLSMDR--YLNYFATKASPTGVILDL 63 (103)
T ss_dssp CCCCCCHHHHHHHHHHHHCGGGTTSSHHHHHHHTTCGG--GHHHHHTSSCHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHhCcCCCCccCHHHHHHHcCChH--HHHHHHcCCCHHHHHHHH
Confidence 3445544 366677776666788899999999988 666665554 33444543
No 357
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=24.16 E-value=1e+02 Score=22.38 Aligned_cols=33 Identities=15% Similarity=0.060 Sum_probs=25.2
Q ss_pred HHHHHHHHH-hcCCHHHHHHHhcCChhHHHHHHh
Q 043121 119 QALLDLIFA-VEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 119 ~~~lD~l~~-~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
..+|+.|.. ..-+.++.|+.+|+|++.+.+.|+
T Consensus 13 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~ 46 (162)
T 2p5v_A 13 IKILQVLQENGRLTNVELSERVALSPSPCLRRLK 46 (162)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 456666654 345789999999999999887664
No 358
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=24.16 E-value=38 Score=24.53 Aligned_cols=38 Identities=21% Similarity=0.115 Sum_probs=31.8
Q ss_pred CchhHHHHHHHHHHHhcCCHHHHHHHhcCChhHHHHHH
Q 043121 113 KFSLGMQALLDLIFAVEGSVSEAAKLLWLSTGALSRLI 150 (169)
Q Consensus 113 ~f~~~l~~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l 150 (169)
..|+--..++-+....+.+++++|+.||+|.+.+-+.|
T Consensus 93 ~Lp~~~r~vl~L~~~~g~s~~EIA~~lgis~~tV~~~l 130 (157)
T 2lfw_A 93 RMTPLSRQALLLTAMEGFSPEDAAYLIEVDTSEVETLV 130 (157)
T ss_dssp TSCTTHHHHHTTTSSSCCCHHHHHHTTTSCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 45667788888888889999999999999999887554
No 359
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=24.05 E-value=79 Score=22.00 Aligned_cols=33 Identities=6% Similarity=0.080 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHhcCChhHHHHHH
Q 043121 118 MQALLDLIFAVE-GSVSEAAKLLWLSTGALSRLI 150 (169)
Q Consensus 118 l~~~lD~l~~~~-~~~~~aa~~l~~st~~L~k~l 150 (169)
|+.++|.|...+ -++++.|+.|++|+..+-+-|
T Consensus 4 L~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL 37 (87)
T 2k02_A 4 LMEVRDMLALQGRMEAKQLSARLQTPQPLIDAML 37 (87)
T ss_dssp THHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHH
Confidence 567888887643 458899999999998776554
No 360
>4ac0_A Tetracycline repressor protein class B from trans TN1 0; transcription; HET: MIY; 2.45A {Escherichia coli}
Probab=24.03 E-value=51 Score=25.02 Aligned_cols=48 Identities=17% Similarity=0.059 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHhcC---CHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 115 SLGMQALLDLIFAVEG---SVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~---~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
-..+...++++...++ ++.+.|+.+|+|++.|-+-+.+-..++.++-+
T Consensus 6 ~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~~F~~K~~Ll~a~~~ 56 (202)
T 4ac0_A 6 SKVINSALELLNEVGIEGLTTRKLAQKLGVEQPTLYWHVKNKRALLDALAI 56 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHHHHhCCCchhHHhhcCCHHHHHHHHHH
Confidence 3467888888888875 68999999999999999998887777776644
No 361
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=24.02 E-value=87 Score=22.82 Aligned_cols=31 Identities=19% Similarity=0.104 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 121 LLDLIFAVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 121 ~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
+|-.|....-.+++.++.+|+|.+.|++.|+
T Consensus 29 IL~~L~~g~~~~~eLa~~lgis~~tls~~L~ 59 (146)
T 2f2e_A 29 IVRDAFEGLTRFGEFQKSLGLAKNILAARLR 59 (146)
T ss_dssp HHHHHHTTCCSHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 3344444456799999999999999998775
No 362
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=23.58 E-value=89 Score=22.48 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=24.5
Q ss_pred HHHHHHHHh-cCCHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIFAV-EGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~~~-~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+|..|... +-.+++.|+.++++.+.++++|.
T Consensus 49 ~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~ 81 (168)
T 2nyx_A 49 RTLVILSNHGPINLATLATLLGVQPSATGRMVD 81 (168)
T ss_dssp HHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 455666553 34689999999999999998775
No 363
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=23.45 E-value=79 Score=21.81 Aligned_cols=38 Identities=5% Similarity=-0.037 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHHhc---CCHHHHHHHhcCChhHHHHHHhc
Q 043121 115 SLGMQALLDLIFAVE---GSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~---~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
.+.-..+|..|...+ -..++.|+.++++.+.+.+.|+.
T Consensus 19 t~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~ 59 (91)
T 2dk5_A 19 DNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKN 59 (91)
T ss_dssp CSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 334556889998754 45889999999999999998864
No 364
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=23.01 E-value=1.1e+02 Score=21.31 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=23.5
Q ss_pred HHHHHHHH-hcCCHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIFA-VEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~~-~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.++..|.. ..-+.++.|+.+|+|++.+.+.|+
T Consensus 8 ~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~ 40 (141)
T 1i1g_A 8 IILEILEKDARTPFTEIAKKLGISETAVRKRVK 40 (141)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 35555543 335789999999999999887654
No 365
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=22.94 E-value=25 Score=25.61 Aligned_cols=48 Identities=6% Similarity=-0.092 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 115 SLGMQALLDLIFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
-.++...++++...+++ +.+.|+..|+|.+.|-+-+.+-..++.++=+
T Consensus 33 ~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~Ll~~~~~ 83 (212)
T 2np3_A 33 EAILTAARVCFAERGFDATSLRRIAETAGVDQSLVHHFYGTKENLFLQALE 83 (212)
T ss_dssp --CHHHHHHHC---------------------------CCC-CHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHHHHHhCCHHHHHHHHHH
Confidence 34788888888888765 7888999999999998888877777766543
No 366
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=22.62 E-value=65 Score=22.92 Aligned_cols=47 Identities=17% Similarity=0.005 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHHh-c---CCHHHHHHHhcCChhHHHHHHhcChhHHHHHH
Q 043121 115 SLGMQALLDLIFAV-E---GSVSEAAKLLWLSTGALSRLILSDDSHQIAVN 161 (169)
Q Consensus 115 ~~~l~~~lD~l~~~-~---~~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n 161 (169)
-..+...+++++.- + -++.+.|+..|+|.+.|-+-+.+-..++.++=
T Consensus 27 ~~Il~aA~~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 77 (212)
T 3nxc_A 27 EEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLI 77 (212)
T ss_dssp HHHHHHHHHHHHC------CCHHHHHHHTTSCHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChhhcCHHHHHHHhCCChhHHHHHCCCHHHHHHHHH
Confidence 45788888877554 3 35999999999999999998888777776653
No 367
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=22.41 E-value=1.1e+02 Score=22.93 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=25.1
Q ss_pred HHHHHHHHHh-cCCHHHHHHHhcCChhHHHHHHh
Q 043121 119 QALLDLIFAV-EGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 119 ~~~lD~l~~~-~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
..+|+.|... .-+.++.|+.+|+|++.+.+.|+
T Consensus 20 ~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~ 53 (171)
T 2ia0_A 20 RNILRLLKKDARLTISELSEQLKKPESTIHFRIK 53 (171)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4567777543 35789999999999998887654
No 368
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=22.39 E-value=1.1e+02 Score=21.42 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCHHHHHHHhcCChhHHHHHHhc
Q 043121 121 LLDLIFAVEGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 121 ~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
+-.+....+.+-++.|+.+|+|.+.+.+.-..
T Consensus 76 l~~~R~~~glsq~~la~~~g~s~~~i~~~E~g 107 (133)
T 3o9x_A 76 IVKVRKKLSLTQKEASEIFGGGVNAFSRYEKG 107 (133)
T ss_dssp HHHHHHHTTCCHHHHHHHHCSCTTHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHCC
Confidence 55567788999999999999999999888764
No 369
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=22.21 E-value=78 Score=25.63 Aligned_cols=31 Identities=35% Similarity=0.243 Sum_probs=23.4
Q ss_pred HHHHHHHhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 121 LLDLIFAVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 121 ~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
++|.|....-++.+.|+.+|++...|.++|+
T Consensus 44 i~~~l~~~~~t~~ela~~~~~~~~~l~r~L~ 74 (360)
T 1tw3_A 44 LVDHILAGARTVKALAARTDTRPEALLRLIR 74 (360)
T ss_dssp HHHHHHTTCCBHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHhCcCHHHHHHHHH
Confidence 5666655556788899999998888887764
No 370
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=22.08 E-value=1.4e+02 Score=21.43 Aligned_cols=32 Identities=22% Similarity=0.079 Sum_probs=23.8
Q ss_pred HHHHHHHhcC--CHHHHHHHhcCChhHHHHHHhc
Q 043121 121 LLDLIFAVEG--SVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 121 ~lD~l~~~~~--~~~~aa~~l~~st~~L~k~l~~ 152 (169)
+|-.|...++ .+++.|+.++++++.++++|..
T Consensus 36 vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~ 69 (151)
T 4aik_A 36 TLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQ 69 (151)
T ss_dssp HHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 5555654433 3489999999999999998753
No 371
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=21.82 E-value=60 Score=23.67 Aligned_cols=23 Identities=26% Similarity=0.137 Sum_probs=19.7
Q ss_pred CCHHHHHHHhcCChhHHHHHHhc
Q 043121 130 GSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 130 ~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
-..++.|.++|+|+..++|.+..
T Consensus 164 ~t~~~lA~~lg~sr~tvsR~l~~ 186 (216)
T 4ev0_A 164 IRHHELAALAGTSRETVSRVLHA 186 (216)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Confidence 35788999999999999988753
No 372
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=21.65 E-value=61 Score=23.45 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=19.7
Q ss_pred CCHHHHHHHhcCChhHHHHHHhc
Q 043121 130 GSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 130 ~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
-..++.|..||+|+..++|+++.
T Consensus 165 ~t~~~lA~~lg~sr~tvsR~l~~ 187 (207)
T 2oz6_A 165 ITRQEIGRIVGCSREMVGRVLKS 187 (207)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCHHHHHHHhCCCHHHHHHHHHH
Confidence 45688999999999999988764
No 373
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=21.30 E-value=97 Score=24.31 Aligned_cols=31 Identities=29% Similarity=0.331 Sum_probs=25.0
Q ss_pred HHHHHHHhc--CCHHHHHHHhcCChhHHHHHHh
Q 043121 121 LLDLIFAVE--GSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 121 ~lD~l~~~~--~~~~~aa~~l~~st~~L~k~l~ 151 (169)
+|+.+...+ ..+++.|+.+|++.+.+.++|.
T Consensus 13 iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~ 45 (249)
T 1mkm_A 13 ILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMV 45 (249)
T ss_dssp HHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 556666543 5799999999999999999876
No 374
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=21.25 E-value=1.3e+02 Score=21.39 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=24.6
Q ss_pred HHHHHHHHH-hcCCHHHHHHHhcCChhHHHHHHh
Q 043121 119 QALLDLIFA-VEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 119 ~~~lD~l~~-~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
..+|+.|.. ..-+.++.|+.+|+|++.+.+.|+
T Consensus 12 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~ 45 (151)
T 2dbb_A 12 MQLVKILSENSRLTYRELADILNTTRQRIARRID 45 (151)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 356666654 345789999999999998877654
No 375
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=21.20 E-value=1.1e+02 Score=21.47 Aligned_cols=47 Identities=9% Similarity=0.033 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHh-cCCHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 116 LGMQALLDLIFAV-EGSVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 116 ~~l~~~lD~l~~~-~~~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
.++...++++... +-++.+.|+..|+|.+.|-+-+.+-..++.++=+
T Consensus 18 ~Il~aA~~lf~~~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 65 (190)
T 2v57_A 18 AILDAAMLVLADHPTAALGDIAAAAGVGRSTVHRYYPERTDLLRALAR 65 (190)
T ss_dssp HHHHHHHHHHTTCTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 4677777777775 3358899999999999999999888888776644
No 376
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=21.11 E-value=1.8e+02 Score=19.00 Aligned_cols=32 Identities=13% Similarity=0.037 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCHHHHHHHhcCChhH----HHHHHhc
Q 043121 121 LLDLIFAVEGSVSEAAKLLWLSTGA----LSRLILS 152 (169)
Q Consensus 121 ~lD~l~~~~~~~~~aa~~l~~st~~----L~k~l~~ 152 (169)
+-......+.+..+.|+.+|+|.+. +.++...
T Consensus 6 lk~~R~~~glsq~~lA~~~gis~~~~~~~is~~E~g 41 (98)
T 3lfp_A 6 LKDARLRAGISQEKLGVLAGIDEASASARMNQYEKG 41 (98)
T ss_dssp HHHHHHHHTCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHhCCCcchhhhHHHHHHCC
Confidence 4455677888899999999999998 8887765
No 377
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=21.04 E-value=63 Score=23.42 Aligned_cols=23 Identities=13% Similarity=0.145 Sum_probs=19.7
Q ss_pred CCHHHHHHHhcCChhHHHHHHhc
Q 043121 130 GSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 130 ~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
...++.|..+|+|+..++|+|..
T Consensus 168 ~t~~~iA~~lg~sr~tvsR~l~~ 190 (210)
T 3ryp_A 168 ITRQEIGQIVGCSRETVGRILKM 190 (210)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCHHHHHHHhCCcHHHHHHHHHH
Confidence 45689999999999999988753
No 378
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=20.88 E-value=1.3e+02 Score=22.58 Aligned_cols=34 Identities=12% Similarity=0.203 Sum_probs=25.4
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHhcCChhHHHHHHh
Q 043121 118 MQALLDLIFA-VEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 118 l~~~lD~l~~-~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
-..+|+.|.. ..-++++.|+.+|+|++.+.+-|+
T Consensus 29 d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~ 63 (171)
T 2e1c_A 29 DKKIIKILQNDGKAPLREISKITGLAESTIHERIR 63 (171)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3456666664 456799999999999998876654
No 379
>2vpr_A Tetracycline resistance repressor protein; transcription, metal-binding, antibiotic resistance, transcr regulator; HET: TDC; 2.49A {Pasteurella multocida}
Probab=20.88 E-value=68 Score=24.19 Aligned_cols=48 Identities=15% Similarity=0.032 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHhc---CCHHHHHHHhcCChhHHHHHHhcChhHHHHHHH
Q 043121 115 SLGMQALLDLIFAVE---GSVSEAAKLLWLSTGALSRLILSDDSHQIAVNE 162 (169)
Q Consensus 115 ~~~l~~~lD~l~~~~---~~~~~aa~~l~~st~~L~k~l~~~~~~~~~~n~ 162 (169)
...+...++++...+ -++.+.|+.+|+|++.|-+-+.+-..++.++-+
T Consensus 7 ~~Il~aA~~l~~~~G~~~~s~~~IA~~agvs~~tlY~~f~~K~~Ll~~~~~ 57 (207)
T 2vpr_A 7 EQVIDNALILLNEVGIEGLTTRKLAQKIGVEQPTLYWHVKNKRALLDALAE 57 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHTTTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHH
Confidence 346788888888876 468999999999999999988888777776644
No 380
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=20.86 E-value=1.2e+02 Score=23.54 Aligned_cols=38 Identities=5% Similarity=-0.008 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHhcCC-hhHHHHHHhcC
Q 043121 116 LGMQALLDLIFAVEGSVSEAAKLLWLS-TGALSRLILSD 153 (169)
Q Consensus 116 ~~l~~~lD~l~~~~~~~~~aa~~l~~s-t~~L~k~l~~~ 153 (169)
.-|..+..+|...+.+++++|..+|++ .+.|+|.+++.
T Consensus 55 ~Rl~~a~~~L~~~~~~i~~ia~~~Gf~~~~~f~r~fk~~ 93 (292)
T 1d5y_A 55 RRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQ 93 (292)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 347778888888889999999999965 67788877763
No 381
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=20.68 E-value=1.1e+02 Score=20.82 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhcCC-HHHHHHHhcCChh-HHHHHH
Q 043121 117 GMQALLDLIFAVEGS-VSEAAKLLWLSTG-ALSRLI 150 (169)
Q Consensus 117 ~l~~~lD~l~~~~~~-~~~aa~~l~~st~-~L~k~l 150 (169)
--..+|+.|...+.. ..++|+.||+++. ++-+-|
T Consensus 12 ~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL 47 (79)
T 1xmk_A 12 IKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVL 47 (79)
T ss_dssp HHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHH
Confidence 345677888777654 6789999999998 655443
No 382
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=20.67 E-value=64 Score=23.76 Aligned_cols=23 Identities=26% Similarity=0.174 Sum_probs=19.6
Q ss_pred CCHHHHHHHhcCChhHHHHHHhc
Q 043121 130 GSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 130 ~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
...++.|..+|+|+..|+|.|..
T Consensus 188 lt~~~lA~~lg~sr~tvsR~l~~ 210 (230)
T 3iwz_A 188 VSRQELARLVGCSREMAGRVLKK 210 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHhCCcHHHHHHHHHH
Confidence 35788999999999999988753
No 383
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=20.52 E-value=95 Score=25.18 Aligned_cols=31 Identities=29% Similarity=0.270 Sum_probs=23.1
Q ss_pred HHHHHHHhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 121 LLDLIFAVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 121 ~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
++|.|....-++.+.|+.+|++...|.++|+
T Consensus 41 i~~~l~~~~~t~~eLA~~~g~~~~~l~r~Lr 71 (374)
T 1qzz_A 41 LVDHLLAGADTLAGLADRTDTHPQALSRLVR 71 (374)
T ss_dssp HHHHHHTTCCSHHHHHHHHTCCHHHHHHHHH
T ss_pred hHHHHhCCCCCHHHHHHHhCcCHHHHHHHHH
Confidence 5666654556788889999998888877764
No 384
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=20.49 E-value=81 Score=24.34 Aligned_cols=32 Identities=19% Similarity=0.219 Sum_probs=24.2
Q ss_pred HHHHHHHHhcCCHHHHHHHhcCChhHHHHHHh
Q 043121 120 ALLDLIFAVEGSVSEAAKLLWLSTGALSRLIL 151 (169)
Q Consensus 120 ~~lD~l~~~~~~~~~aa~~l~~st~~L~k~l~ 151 (169)
.+|..|....-++++.|+.+|+|++.+.+-|.
T Consensus 24 ~IL~~L~~~~~s~~eLA~~lglS~stv~~~l~ 55 (192)
T 1uly_A 24 KILKLLRNKEMTISQLSEILGKTPQTIYHHIE 55 (192)
T ss_dssp HHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 35556654455789999999999999887664
No 385
>1i3j_A I-TEVI, intron-associated endonuclease 1; protein-DNA complex, extended structure, Zn-finger, minor groove helix, helix-turn-helix; 2.20A {Enterobacteria phage T4} SCOP: d.285.1.1 PDB: 1t2t_A
Probab=20.46 E-value=79 Score=23.32 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=21.5
Q ss_pred cCCHHHHHHHhcCChhHHHHHHhcC
Q 043121 129 EGSVSEAAKLLWLSTGALSRLILSD 153 (169)
Q Consensus 129 ~~~~~~aa~~l~~st~~L~k~l~~~ 153 (169)
=++..+||+.||.+.+-+++.+.++
T Consensus 83 f~S~~eAar~lg~s~~ti~~~~~~~ 107 (116)
T 1i3j_A 83 FDCAADAARHFKISSGLVTYRVKSD 107 (116)
T ss_dssp ESSHHHHHHHHTCCHHHHHHHHHCT
T ss_pred EcCHHHHHHHHCCCchhHHHHHhcC
Confidence 4578999999999999999888664
No 386
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=20.29 E-value=1.4e+02 Score=21.73 Aligned_cols=45 Identities=7% Similarity=-0.157 Sum_probs=36.5
Q ss_pred hHHHHHHHH-HHHhcCC---HHHHHHHhcCChhHHHHHHhcChhHHHHH
Q 043121 116 LGMQALLDL-IFAVEGS---VSEAAKLLWLSTGALSRLILSDDSHQIAV 160 (169)
Q Consensus 116 ~~l~~~lD~-l~~~~~~---~~~aa~~l~~st~~L~k~l~~~~~~~~~~ 160 (169)
.+++++.++ +...+.+ +.+.|+.-|+|++.+-+-+.+-..++..+
T Consensus 23 ~I~~Aa~~lF~~~~g~~~~tv~~Ia~~Agvs~~t~Y~~F~~K~~L~~~~ 71 (185)
T 3o60_A 23 KLYTVLERFYVEDRTFESISIKDLCEQARVSRATFYRHHKEIIQVIEVQ 71 (185)
T ss_dssp HHHHHHHHHHHTTCCTTTCCHHHHHHHHTCCHHHHHHHCSSTHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 477888888 5776654 89999999999999999888877777654
No 387
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=20.21 E-value=67 Score=23.47 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=20.3
Q ss_pred cCCHHHHHHHhcCChhHHHHHHhc
Q 043121 129 EGSVSEAAKLLWLSTGALSRLILS 152 (169)
Q Consensus 129 ~~~~~~aa~~l~~st~~L~k~l~~ 152 (169)
....++.|..+|+|+..++|++..
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~ 192 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRY 192 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHH
Confidence 446788999999999999988753
Done!