RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 043121
         (169 letters)



>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
           {Escherichia coli [TaxId: 562]}
          Length = 362

 Score = 45.0 bits (106), Expect = 1e-06
 Identities = 24/55 (43%), Positives = 34/55 (61%)

Query: 27  ECEMDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNLDA 81
           +  +D Y+ SG G QH N+ ESAVR+ H+PTG++     DRSQHKN   ++    
Sbjct: 235 DLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMK 289


>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
           {Thermotoga maritima [TaxId: 2336]}
          Length = 333

 Score = 45.1 bits (106), Expect = 1e-06
 Identities = 20/54 (37%), Positives = 38/54 (70%)

Query: 26  RECEMDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVNL 79
            + +++T++ SG G Q+ NK ESAVR+ H+PTG++     +RSQ++N  +++ +
Sbjct: 196 EDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQYQNKQTALRI 249


>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 112

 Score = 41.9 bits (98), Expect = 3e-06
 Identities = 12/73 (16%), Positives = 21/73 (28%), Gaps = 25/73 (34%)

Query: 27 ECEMDTYKLSGPGSQHRNKRESAVRLKH-------------------------VPTGVIA 61
             +   + SGPG Q+ NK  S   ++                              ++ 
Sbjct: 21 RLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVL 80

Query: 62 HAAEDRSQHKNHA 74
           +   R Q +N A
Sbjct: 81 TSESSRYQFRNLA 93


>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1
           {Escherichia coli [TaxId: 562]}
          Length = 344

 Score = 43.2 bits (101), Expect = 4e-06
 Identities = 22/52 (42%), Positives = 37/52 (71%)

Query: 27  ECEMDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAEDRSQHKNHASSVN 78
           +  +DT++ SG G QH N  +SA+R+ H+PTG++    ++RSQHKN A +++
Sbjct: 211 DLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALS 262


>d1szia_ a.24.23.1 (A:) Mannose-6-phosphate receptor binding
          protein 1 (Tip47), C-terminal domain {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 226

 Score = 25.2 bits (55), Expect = 4.4
 Identities = 14/51 (27%), Positives = 19/51 (37%)

Query: 15 NYLELTDDELLRECEMDTYKLSGPGSQHRNKRESAVRLKHVPTGVIAHAAE 65
          N L LT+ EL                Q R ++   VRL  +   +  HA E
Sbjct: 1  NRLPLTEAELALIATPPEDSDMASLQQQRQEQNYFVRLGSLSERLRNHAYE 51


>d1ggpa_ d.165.1.1 (A:) Lectin 1 A-chain {Mongolian snake-gourd
           (Trichosanthes kirilowii) [TaxId: 3677]}
          Length = 234

 Score = 24.8 bits (54), Expect = 5.0
 Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 3/83 (3%)

Query: 59  VIAHAAEDRSQHKNHASSVNLDAYSPPPQLLQILPPKSTITSSEVGPQIGPNNPKFSLGM 118
           V+A+ A   S     A   +L  +         L   +T          G N     LG 
Sbjct: 62  VVAYRAGSNSYFHAAAPGSSLS-HLFSRSSQHTLGFDNTYGDMA--QAAGSNRKAIPLGA 118

Query: 119 QALLDLIFAVEGSVSEAAKLLWL 141
            AL   I ++      A  L+ +
Sbjct: 119 AALESGIASLNSKNPLARTLMVI 141


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.126    0.355 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 546,816
Number of extensions: 21804
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 7
Length of query: 169
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,322,926
Effective search space: 119063340
Effective search space used: 119063340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.5 bits)