BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043122
         (106 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
          Atwrky4
 pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
          W-Box Dna
          Length = 78

 Score =  100 bits (250), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 44/70 (62%), Positives = 52/70 (74%)

Query: 17 AFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVT 76
            QT S+VD+LDDGYRWRKYGQK VK N +PRSYY+CT  GC V+K V+R   D   VVT
Sbjct: 7  GVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVT 66

Query: 77 TYEGMHSHPI 86
          TYEG H+H +
Sbjct: 67 TYEGKHNHDL 76


>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof
          Atwrky1, An Sa-Induced And Partially Npr1-Dependent
          Transcription Factor
          Length = 76

 Score = 91.3 bits (225), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 52/70 (74%)

Query: 15 RYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVV 74
          R    T++  DI++DGYRWRKYGQK+VK + +PRSYYRC+  GC VKK V+R + D  ++
Sbjct: 2  RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 75 VTTYEGMHSH 84
          +TTYEG H H
Sbjct: 62 ITTYEGKHDH 71


>pdb|3CWV|A Chain A, Crystal Structure Of B-Subunit Of The Dna Gyrase From
           Myxococcus Xanthus
 pdb|3CWV|B Chain B, Crystal Structure Of B-Subunit Of The Dna Gyrase From
           Myxococcus Xanthus
          Length = 369

 Score = 28.1 bits (61), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 17  AFQTRSQVDILDDGYRWRKYGQ 38
           A  +R QVDI  DG +WR  G+
Sbjct: 107 ALSSRYQVDIWADGRQWRVMGE 128


>pdb|1J5U|A Chain A, Crystal Structure Of An Archease, Possible Chaperone
           (Tm1083) From Thermotoga Maritima At 2.0 A Resolution
          Length = 136

 Score = 27.7 bits (60), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 49  SYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSHPIERSTDNFEHILNQMQIYTS 105
           SY     +  N+      L ++EG+V+ T E    +P+E + D F   +N   +  S
Sbjct: 31  SYEELLEEARNI------LLEEEGIVLDTEEKEKXYPLEETEDAFFDTVNDWILEIS 81


>pdb|2Z15|A Chain A, Crystal Structure Of Human Tob1 Protein
 pdb|2Z15|B Chain B, Crystal Structure Of Human Tob1 Protein
 pdb|2Z15|C Chain C, Crystal Structure Of Human Tob1 Protein
 pdb|2Z15|D Chain D, Crystal Structure Of Human Tob1 Protein
          Length = 130

 Score = 26.2 bits (56), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 12/46 (26%), Positives = 21/46 (45%)

Query: 49  SYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSHPIERSTDNFE 94
           S +RC H G  V   +++ +K+ G+ +    G     +    D FE
Sbjct: 60  SGFRCIHIGEKVDPVIEQASKESGLDIDDVRGNLPQDLSVWIDPFE 105


>pdb|2D5R|B Chain B, Crystal Structure Of A Tob-Hcaf1 Complex
          Length = 116

 Score = 26.2 bits (56), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 12/46 (26%), Positives = 21/46 (45%)

Query: 49 SYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSHPIERSTDNFE 94
          S +RC H G  V   +++ +K+ G+ +    G     +    D FE
Sbjct: 54 SGFRCIHIGEKVDPVIEQASKESGLDIDDVRGNLPQDLSVWIDPFE 99


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,967,087
Number of Sequences: 62578
Number of extensions: 103401
Number of successful extensions: 239
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 235
Number of HSP's gapped (non-prelim): 6
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)