Query 043122
Match_columns 106
No_of_seqs 132 out of 631
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 23:05:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043122.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043122hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 3.3E-40 1.1E-44 218.8 6.9 75 14-88 1-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 5.4E-40 1.8E-44 218.7 4.8 75 14-88 4-78 (78)
3 2rpr_A Flywch-type zinc finger 88.7 0.49 1.7E-05 30.1 3.7 60 15-87 12-74 (87)
4 1odh_A MGCM1; transcription fa 35.3 33 0.0011 25.2 3.4 20 73-92 143-162 (174)
5 1cz6_A Protein (androctonin); 31.4 12 0.00041 19.3 0.3 8 49-56 16-23 (26)
6 3kp1_A D-ornithine aminomutase 27.3 23 0.00078 31.4 1.5 64 26-101 27-95 (763)
7 1xiw_B T-cell surface glycopro 23.4 20 0.0007 22.4 0.4 27 28-54 17-53 (79)
8 4g9j_C Synthetic peptide, seri 19.7 37 0.0013 17.4 0.8 18 4-21 2-19 (26)
9 1xiw_A T-cell surface glycopro 15.3 52 0.0018 22.1 1.0 28 28-55 33-79 (105)
10 1igq_A Transcriptional repress 14.8 1E+02 0.0035 19.0 2.1 14 25-38 29-42 (62)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=3.3e-40 Score=218.78 Aligned_cols=75 Identities=52% Similarity=1.031 Sum_probs=72.7
Q ss_pred ceeEEEeeccccccCCCcceeecCcccccCCCCCCccccccccccccccceeeecCCCCEEEEeEeccCCCCCCC
Q 043122 14 PRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSHPIER 88 (106)
Q Consensus 14 ~r~~~~t~s~~~~~~DGy~WRKYGQK~ikg~~~pRsYyrCt~~~C~akK~Vqr~~~D~~~~~~tY~G~H~h~~~~ 88 (106)
.|++++|.+++++++|||.|||||||.|+|+++||+||||++++|+|+|+|||+++|+.+++|||+|+|||+.|.
T Consensus 1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 378999999999999999999999999999999999999999999999999999999999999999999999885
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=5.4e-40 Score=218.71 Aligned_cols=75 Identities=59% Similarity=1.053 Sum_probs=69.4
Q ss_pred ceeEEEeeccccccCCCcceeecCcccccCCCCCCccccccccccccccceeeecCCCCEEEEeEeccCCCCCCC
Q 043122 14 PRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSHPIER 88 (106)
Q Consensus 14 ~r~~~~t~s~~~~~~DGy~WRKYGQK~ikg~~~pRsYyrCt~~~C~akK~Vqr~~~D~~~~~~tY~G~H~h~~~~ 88 (106)
.+++++|.+++++++|||.|||||||.|+|+++||+||||++++|+|+|+|||+++|+.+++|||+|+|||+.|.
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999873
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=88.72 E-value=0.49 Score=30.11 Aligned_cols=60 Identities=15% Similarity=0.320 Sum_probs=37.1
Q ss_pred eeEEEeeccccccCCCcceeecCcccccCCCCCCccccccc---cccccccceeeecCCCCEEEEeEeccCCCCCC
Q 043122 15 RYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTH---QGCNVKKQVQRLTKDEGVVVTTYEGMHSHPIE 87 (106)
Q Consensus 15 r~~~~t~s~~~~~~DGy~WRKYGQK~ikg~~~pRsYyrCt~---~~C~akK~Vqr~~~D~~~~~~tY~G~H~h~~~ 87 (106)
.++.-.+....++-|||.-.+--+ ...+.|.+|+. .+|.|+=... . +. + .-.+.||||+.
T Consensus 12 ~fv~s~rG~~~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~--~-~~--~--~~~~~HnH~p~ 74 (87)
T 2rpr_A 12 EFLRTSLGGRFLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQ--G-HR--I--MVMRSHCHQPD 74 (87)
T ss_dssp EEEEETTTEEEEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEE--T-TE--E--EECSCCSSCCC
T ss_pred EEEEcCCCCcEEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEc--C-CC--E--ECCCCcCCCCc
Confidence 444444455667899998765221 23468999997 5899974433 2 22 2 34688999753
No 4
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=35.31 E-value=33 Score=25.18 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=13.9
Q ss_pred EEEEeEeccCCCCCCCCCCc
Q 043122 73 VVVTTYEGMHSHPIERSTDN 92 (106)
Q Consensus 73 ~~~~tY~G~H~h~~~~st~~ 92 (106)
.+...=+|.|+||.|.+...
T Consensus 143 ~ifFqaKG~HDHpRPe~k~~ 162 (174)
T 1odh_A 143 FIFFQSKGEHDHPRPETKLE 162 (174)
T ss_dssp BEEEEEECCCCSCCCCCHHH
T ss_pred EEEEecccccCCCCCCCccc
Confidence 33344579999999987433
No 5
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=31.41 E-value=12 Score=19.31 Aligned_cols=8 Identities=50% Similarity=1.460 Sum_probs=6.5
Q ss_pred cccccccc
Q 043122 49 SYYRCTHQ 56 (106)
Q Consensus 49 sYyrCt~~ 56 (106)
.||+|++.
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 69999973
No 6
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=27.31 E-value=23 Score=31.41 Aligned_cols=64 Identities=20% Similarity=0.241 Sum_probs=39.5
Q ss_pred ccCCCcceeecCcccccCCCCCCccccccc-----cccccccceeeecCCCCEEEEeEeccCCCCCCCCCCchhhhhhhc
Q 043122 26 ILDDGYRWRKYGQKAVKNNKFPRSYYRCTH-----QGCNVKKQVQRLTKDEGVVVTTYEGMHSHPIERSTDNFEHILNQM 100 (106)
Q Consensus 26 ~~~DGy~WRKYGQK~ikg~~~pRsYyrCt~-----~~C~akK~Vqr~~~D~~~~~~tY~G~H~h~~~~st~~~~~~~~~~ 100 (106)
+---||.||| +.-.+.-.|-.|+.|+. -.-|+-|.+...+.-|.-++++= -.|.+|...++||
T Consensus 27 p~r~gw~wr~---~~~~~~~~~~~y~~~s~~l~~~~~lp~~~~~~~~~~~p~~~i~~~---------vAtG~~~~Di~~~ 94 (763)
T 3kp1_A 27 PKRRGWTWRQ---PAENLQMGPFIYKDASTPLENSVALPSAKYFGDIDPQPLPVITTE---------IASGRFEDDIRRM 94 (763)
T ss_dssp CSCCSCCCCC---BCTTEEETTEEESSEECCCSSCCCCGGGGGGTTCCCEESSEEEEE---------CCCSCHHHHHHHH
T ss_pred cccCCccccc---cCCCCCcCCcchhhhchhhhcCCCCchHHHHhhcCCCCCCEEEEE---------EecCchHHHHHHH
Confidence 3456999997 22222344567888986 24457777775433333344432 3577888888887
Q ss_pred c
Q 043122 101 Q 101 (106)
Q Consensus 101 ~ 101 (106)
+
T Consensus 95 ~ 95 (763)
T 3kp1_A 95 R 95 (763)
T ss_dssp H
T ss_pred H
Confidence 6
No 7
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=23.41 E-value=20 Score=22.36 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=19.0
Q ss_pred CCCcceeecCccc--------cc--CCCCCCcccccc
Q 043122 28 DDGYRWRKYGQKA--------VK--NNKFPRSYYRCT 54 (106)
Q Consensus 28 ~DGy~WRKYGQK~--------ik--g~~~pRsYyrCt 54 (106)
.+++.|-|-|... +. ...-||++|.|.
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~ 53 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCN 53 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEec
Confidence 6678999988642 22 334599999994
No 8
>4g9j_C Synthetic peptide, serine/threonine-protein phosphatase PP1-alpha Ca subunit; activating peptide; 3.10A {Homo sapiens}
Probab=19.67 E-value=37 Score=17.39 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=12.7
Q ss_pred CcCCccccccceeEEEee
Q 043122 4 IKKGEKKVRKPRYAFQTR 21 (106)
Q Consensus 4 ~~~~~~~~~~~r~~~~t~ 21 (106)
.|.++++++..|+.|-..
T Consensus 2 rkrpkrkrknarvtfaea 19 (26)
T 4g9j_C 2 RKRPKRKRKNARVTFAEA 19 (26)
T ss_pred CcccccccccceeeHHHh
Confidence 466778888888877443
No 9
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=15.29 E-value=52 Score=22.14 Aligned_cols=28 Identities=14% Similarity=0.335 Sum_probs=19.7
Q ss_pred CCCcceeecCccc----------------ccCCCC---CCccccccc
Q 043122 28 DDGYRWRKYGQKA----------------VKNNKF---PRSYYRCTH 55 (106)
Q Consensus 28 ~DGy~WRKYGQK~----------------ikg~~~---pRsYyrCt~ 55 (106)
++...|-+-|+.. +.++-. ||++|.|..
T Consensus 33 ~~~I~W~k~~~~i~~~~~~~~~~~~~~~L~L~~~~~~d~sG~Y~C~~ 79 (105)
T 1xiw_A 33 GSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYP 79 (105)
T ss_dssp TSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEE
T ss_pred CCceEEEeCCccccccccccccccCCCeEEeccccccCCCceEEEcc
Confidence 3558999988652 445533 899999964
No 10
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=14.82 E-value=1e+02 Score=19.02 Aligned_cols=14 Identities=36% Similarity=0.812 Sum_probs=11.4
Q ss_pred cccCCCcceeecCc
Q 043122 25 DILDDGYRWRKYGQ 38 (106)
Q Consensus 25 ~~~~DGy~WRKYGQ 38 (106)
.++.+|+.|-||-.
T Consensus 29 Rps~~G~~wiKyED 42 (62)
T 1igq_A 29 RPPAEGYAWLKYED 42 (62)
T ss_dssp CCSSTTEEEEEETT
T ss_pred CCCcCceEEEEEec
Confidence 36799999999954
Done!